Psyllid ID: psy4730

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510---
Protein Sequence
MNISRTWKEHSKMLTAIEKSVTGNTTEEFKKAHKEEHSKMLTAIEKSVTGNTTEEFKKAHKEVLTLLDLLQKDRTTARQINEEQELLKMVRTNYETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSKLESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSLKNMLDLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVVWVTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYEYLGNSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPTFPPNLRPSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYGPAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIMGLTQLPASHCKAPDKMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKTISADDLRSLFFGNFLGNTIIFPGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPGYAGRTELPDNLKVLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVSTTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKCISWTTF
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHccccHHHHHHHHHHHHHcccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccEEcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHccccccccccccHHHHHHcccccEEcccccEEEEEcccccEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcEEEEEEcccHHHHHHHHHcccccccccHHHHHcccEEEcccEEEEEEEEEEEcccccccccccEEEcccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEccccccccccHHHHEEcccccccHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccHHHHHHccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccccEEEEcccEEEEEcccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccccccHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEccEEEEcccEEEEEEcccccccccccccccEEEEEEEEEEcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccEEccccccHHHHHHHHHHHHHHHHHcccccccccccEEEEcccccccccccccccccccccccccHHHHHHHHHHcccccccEEEEEcccccHHHHHccccccccccccccccccccccccccEEEEEcccccccccccccccEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHcHHcHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccEcccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEccccccEEEccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccHHHHHHHHHcHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccEEEEEEEccccEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccEEEEEEEEEHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccHcccEEEEEEEEEHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEEEccccccEEEcccccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHEEEEEEccccccccccccHHHHHcccHHHHHHHHHHHHHHHccccEEEEccccccccEEHHHHHHccccccHcHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEccccccccccccHHHHHHHHHHHcccHHHHHcccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccccccHcEEEEEEEEcccccEEccccccccHHHHHHHHHcccccccccccHHHHccHHEEEEccccccccccHHHEEEEEEEEccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHEEEEEEHHHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEccccccHHHHccccccHHHHHccccccccccHHHHcHccHHHHHHHHHHHHHHHHHHHHHccEEEEcccEEEcccEEEEEEEcccccccccccHHHHHHHcccHHEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHcccHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccccEEEEEEEHHHHHHHccEEEEccccccHHHHHHHHHHHHHHHcccccHccccEEEEEEEccccccccccccEcEccccccccccHHHHHHHHHHHccccccEEEEEccccccEEEEccccccccccEEEEccccEEEcccccEEEEEcccHHHccccEEccccEEEEcHHHcccccc
Coil and Loop (DISEMBL)
MNISRTWKEHSKMLTAIEKSVTGNTTEEFKKAHKEEHSKMLTAIEKSVTGNTTEEFKKAHKEVLTLLDLLQKDRTTARQINEEQELLKMVRTNYETVDEMLERLEPFDQLWSIILEFressdlwmegpfkglnadeikDKTDFMFRELNQLARKmtrapgckmvnDLTRSKLEsfrkevpilqcisnpgmeeRHWKILSdelgqditpndqTSLKNMLDLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEWSdikldvvpyrdtgtyiiqGTDEIQVMLDDHILRAqtmrgspyikpfeTEMEAWESKLINMQDILDIWLQVQgtwmylepifssedimrqmpeesrnfktVDQIWKTIMLFVnkdphilqATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKrlffprffflsNDELLEILSetkdplrvqpHLKKIFEGinlleysdslEIIGMISLEGEKValsglirpndakGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVVWVTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYeylgnsdrlvitplTDRCYRTLMSALKLhlggapegpagtgktetSKDLAKAVAKQCIVfncsdrptfppnlrpsdliiptnvTCMQNFFINLylqndvpmmfvgptgtgkSTIVLNLLLnlskdkylpniinfsartssnITQEMIMAKLDRrrkgvygpamgKKYIVFIAGSlkikypekdEFVIVLRAIIDvnmpkflvqdlplfigiykdlfpgielpptdrdELIEQIKINLAKRNAQATDWYIEKIIQVYEMILDdlnmpqketygaqPAVELLRQIIDhkhlydfqtvtrVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSestkvflpipskshyvfNLRDFAKVIMGltqlpashckapdkmYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGTKMDEFLKnkitdktisaddlrslffgnflgntiifpgawacfdefnRIELEVLSVVAQQVQSIQLATIAKLKKFMFegteislnptsmifitmnpgyagrtelpdNLKVLFRSVAmmvpdyamIGEISLYSMGFQNAKILAEKIVYTYKLCSeqlssqshydYGMRAVKSVLNAAGslkikypekdEFVIVLRAIIDvnmpkflvqdlplfigiykdlfpgielpptdrdELIEQIKINLAKRNAQATDWYIEKIIQVYEMILVRHGLMvvgesfggktTAYQTLADSLTDIAAKKSATMKEFKTgykiinpksitmgqlygefdsashewRDGILAKTFREMAvsttpdrkwimfdgpIDAVWIENMntvlddnkklclINGEIIKMSNTMNLIFEcenlefaspatvsRVGMIYFELKCISWTTF
Flexible Loop (DISEMBL)
mnisrtwkehskmltaieksvtgntTEEFKKAHKEEHSKMLTAIEKSVTGNTTEEFKKAHKEVLTLLDLLQKDRTTARQINEEQELLKMVRTNYETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLArkmtrapgckmVNDLTRSklesfrkevpilqcisnpgmeERHWKILSDELGQDITPNDQTSLKNMLDLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRLFFPRFFFLSNDELLEILSEtkdplrvqpHLKKIFEGINLLEYSDSLEIIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVVWVTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYEYLGNSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPTFPPNLRPSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIInfsartssnitqEMIMAKLDRRRKGVYGPAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLakrnaqatdWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIMGLTQLPASHCKAPDKMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKTISADDLRSLFFGNFLGNTIIFPGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPGYAGRTELPDNLKVLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLakrnaqatdWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVsttpdrkwimfDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKCISWTTF
Low Complexity Region (SEG)
MNISRTWKEHSKMLTAIEKSVTGNTTEEFKKAHKEEHSKMLTAIEKSVTGNTTEEFKKAHKEVLTLLDLLQKDRTTARQINEEQELLKMVRTNYETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSKLESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSLKNMLDLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEkkrlffprffflSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVVWVTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYYnvnnlvnvCMITTTVQYGYEYLGNSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPTFPPNLRPSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYGPAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIMGLTQLPASHCKAPDKMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKTISADDLRSLFFGNFLGNTIIFPGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPGYAGRTELPDNLKVLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVSTTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKCISWTTF
Disordered region (IsUnstruct)
***********************************************************HKEVLTLLDLLQKDRTTARQINEEQELLKMVRTNYETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSKLESFRKEVPILQCISNPGMEERHWKILSDELG**********LKNMLDLGIRNILPKL*****************NKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIFSSEDI*********NFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVVWVTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYEYLGNSDRLVITPLTDRCYRTLMSALKLHLG******************AKAVAKQCIVFNCSDRPTFPPNLRPSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYGPAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIMGLTQLPASHCKAPDKMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKTISADDLRSLFFGNFLGNTIIFPGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPGYAGRTELPDNLKVLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVSTTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKCISWT**
Disordered Region (DISOPRED)
MNISRTWKEHSKMLTA**************KAHKEEHSKMLTAIEKSVTGNTTEEFKKAHKEVLTLLDLLQKDRTTARQINEEQELLKMVRTNYETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSKLESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSLKNMLDLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVVWVTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYEYLGNSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPTFPPNLRPSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYGPAMGKKYIVFIAGSLKIK**EKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIMGLTQLPASHCKAPDKMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKTISADDLRSLFFGNFLGNTIIFPGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPGYAGRTELPDNLKVLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCS********YDYGMRAVKSVLNAAGS*******KDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTD**********EFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVSTTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKCISWTTF
Disordered Region (DISEMBL)
********EHSKMLTAIEKSVTGNTTEEFKKAHKEEHSKMLTAIEKSVTGNTTEEFKKAHKEVLTLLDLLQKDRTTARQINEEQELLKMVRTNYETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSKLESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSLKNMLDLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVVWVTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYEYLGNSDRLVITPLTDRCYRTLMSALKLHLGGAPE***************KAVAKQCIVFNCSDRPTFPPNLRPSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYGPAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIMGLTQLPASHCKAPDKMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKTISADDLRSLFFGNFLGNTIIFPGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPGYAGRTELPDNLKVLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVSTTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKCISWTTF
Disordered Region (DISPRO)
MNISRTWKEHSKMLTAIEKSVTGNTTEEFKKAHKEEHSKMLTAIEKSVTGNTTEEFKKAHKEVLTLLDLLQKDRTTARQINEEQELLKMVRTNYETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSKLESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSLKNMLDLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVVWVTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYEYLGNSDRLVITPLTDRCYRTLMSALKLHLGGAP********TETSKDLAKAVAKQCIVFNCSDRPTFPPNLRPSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYGPAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIMGLTQLPASHCKAPDKMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKTISADDLRSLFFGNFLGNTIIFPGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPGYAGRTELPDNLKVLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVSTTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKCISWTTF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNISRTWKEHSKMLTAIEKSVTGNTTEEFKKAHKEEHSKMLTAIEKSVTGNTTEEFKKAHKEVLTLLDLLQKDRTTARQINEEQELLKMVRTNYETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSKLESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSLKNMLDLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVVWVTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYEYLGNSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPTFPPNLRPSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYGPAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIMGLTQLPASHCKAPDKMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKTISADDLRSLFFGNFLGNTIIFPGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPGYAGRTELPDNLKVLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVSTTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKCISWTTF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1513	2.2.26 [Sep-21-2011]
Q3V0Q1	3086	Dynein heavy chain 12, ax	no	N/A	0.551	0.270	0.432	0.0
Q8TD57	4116	Dynein heavy chain 3, axo	yes	N/A	0.424	0.155	0.535	0.0
Q8WXX0	4024	Dynein heavy chain 7, axo	no	N/A	0.407	0.153	0.510	1e-178
Q8BW94	4083	Dynein heavy chain 3, axo	no	N/A	0.424	0.157	0.520	1e-177
Q63170	4057	Dynein heavy chain 7, axo	no	N/A	0.448	0.167	0.459	1e-173
Q6ZR08	3092	Dynein heavy chain 12, ax	no	N/A	0.424	0.207	0.491	1e-166
Q923J6	3092	Dynein heavy chain 12, ax	no	N/A	0.419	0.205	0.485	1e-165
Q63164	4516	Dynein heavy chain 1, axo	no	N/A	0.442	0.148	0.417	1e-157
Q9P2D7	4330	Dynein heavy chain 1, axo	no	N/A	0.457	0.159	0.410	1e-154
P0C6F1	4456	Dynein heavy chain 2, axo	no	N/A	0.388	0.131	0.402	1e-122

>sp|Q3V0Q1|DYH12_MOUSE Dynein heavy chain 12, axonemal OS=Mus musculus GN=Dnah12 PE=1 SV=2

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/895 (43%), Positives = 534/895 (59%), Gaps = 60/895 (6%)

Query: 55   EFKKAHKEVLTLLDL---LQKDRTTARQINEEQELLKMVRTNYETVDEMLERLEPFDQLW 111
            E  + H+ V  +  L   +Q+     + IN+E+EL K   T Y  ++++   +EP+ + +
Sbjct: 631  ELDRMHQYVADVRQLQKRIQESEEAVQFINKEEELFKWELTKYPELEKLKVTIEPYQKFF 690

Query: 112  SIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSK 171
            + +L+++ +   WM+G F  LN + ++   D   RE+ +  +        ++      ++
Sbjct: 691  NFVLKWQRTEKRWMDGGFLDLNGESMEADIDDFSREVFRTLKFFHAKQKKELQERRKAAR 750

Query: 172  LESFRKEVPILQCISNPG---MEERHWKILSDELGQDITPNDQTSLKNMLDLGIRNILPK 228
              S  +E P  +   NP    M  RHWK +S+ +G D+TP+  T+L+ +L L +   L  
Sbjct: 751  KRSLMEEKPEEEPKENPTITMMRARHWKQMSEIVGYDLTPDSGTTLRKVLKLNLSPYLES 810

Query: 229  LEEVSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRA 288
             E +S  ASKE  L +S+N M+  W DI   +  YRDTG  I+   DEIQ +LDD I++ 
Sbjct: 811  FEVISAGASKEFSLERSMNAMIATWDDISFHISLYRDTGIGILSSVDEIQAILDDQIIKT 870

Query: 289  QTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEES 348
            QTMRGSP+IKPFE E++AWE +LI +Q+ +D WL+VQ  W+YLEPIF SEDIM+QMPEE 
Sbjct: 871  QTMRGSPFIKPFENEIKAWEDRLIRIQETIDEWLKVQAQWLYLEPIFCSEDIMQQMPEEG 930

Query: 349  RNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRLF 408
            R F+TVD+ WK IM F  KDP +L AT +  +L+    CN +LE I KGLN YLEKKRLF
Sbjct: 931  RQFQTVDRHWKDIMKFCAKDPKVLAATSLTGLLEKLQNCNDLLEKIMKGLNAYLEKKRLF 990

Query: 409  FPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEKVAL 468
            FPRFFFLSNDE+LEILSETKDPLRVQPHLKK FEGI  LE+  +L+I  M S EGE+V L
Sbjct: 991  FPRFFFLSNDEMLEILSETKDPLRVQPHLKKCFEGIAKLEFLANLDIKAMYSSEGERVEL 1050

Query: 469  SGLIRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVVWVTKWPGMVVICVS 528
              LI    A+G VEKWL QVEDLM++S++D+   +  AY +S R  WV +WPG VV+CVS
Sbjct: 1051 IALISTTAARGAVEKWLIQVEDLMLRSIRDVIAASRLAYPESARKDWVREWPGQVVLCVS 1110

Query: 529  SITWTAEVEKAIQG--RKLDAMLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAK 586
             + WT+E ++ I G    L     +   Q++ +V  VRGKL    RIT+ AL+ IDVHA+
Sbjct: 1111 QMFWTSETQEIISGGTEGLKKYYKELQYQLNDIVELVRGKLSKQTRITLGALVTIDVHAR 1170

Query: 587  EVVASLVESKVTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYEYLGNSDRLVITPLT 646
            +VV  ++E  V+   DF W++QLRYY       V +I   V+Y YEYLGNS RLVITPLT
Sbjct: 1171 DVVMDMIEMGVSHDTDFQWLAQLRYYWEYENARVRIINCNVKYAYEYLGNSPRLVITPLT 1230

Query: 647  DRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSD------RPTFP 700
            DRCYRTL+ A  L+LGGAPEGPAGTGKTET+KDLAKA+A QC+VFNCSD         F 
Sbjct: 1231 DRCYRTLIGAFYLNLGGAPEGPAGTGKTETTKDLAKALAVQCVVFNCSDGLDYLAMGKFF 1290

Query: 701  PNLRPSDL----------------IIPTNVTCMQNFFINLYLQNDV---------PMMFV 735
              L  S                  ++   + C+Q   I   L+  V         P  FV
Sbjct: 1291 KGLASSGAWACFDEFNRIELEVLSVVAQQILCIQR-AIQQKLEAFVFEGTELRLNPNCFV 1349

Query: 736  G----PTGTGKSTIVLNL-LLNLSKDKYLPN--------IINFSARTSSNITQEMIMA-- 780
                 P   G+S +  NL +L  +    +PN        + ++    +  ++ +++M   
Sbjct: 1350 AITMNPGYAGRSELPDNLKVLFRTVAMMVPNYALIAEISLYSYGFLNAKPLSVKIVMTYR 1409

Query: 781  ----KLDRRRKGVYGPAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDL 836
                +L  +    YG    K  +V  AG+LK+KYP ++E +++LR+I DVN PKFL  D+
Sbjct: 1410 LCSEQLSSQFHYDYGMRAVKAVLV-AAGNLKLKYPNENEDILLLRSIKDVNEPKFLSHDI 1468

Query: 837  PLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMIL 891
            PLF GI  DLFPGI+LP  D  E +E         N Q   +++EKIIQ YEM++
Sbjct: 1469 PLFNGITSDLFPGIKLPEADYKEFLECAHETCQTHNLQPVKFFLEKIIQTYEMMI 1523

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.
Mus musculus (taxid: 10090)

>sp|Q8TD57|DYH3_HUMAN Dynein heavy chain 3, axonemal OS=Homo sapiens GN=DNAH3 PE=2 SV=1

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/644 (53%), Positives = 445/644 (69%)

Query: 52   TTEEFKKAHKEVLTLLDLLQKDRTTARQINEEQELLKMVRTNYETVDEMLERLEPFDQLW 111
            TTEE K   +++  L   L +       IN+E+ELL+  ++ Y  +  ML+   P++QLW
Sbjct: 814  TTEEMKHNVEKLNELSKNLNRAFAEFELINKEEELLEKEKSTYPLLQAMLKNKVPYEQLW 873

Query: 112  SIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSK 171
            S   EF   S+ WM GP   LNA++I ++   M+R   +L + ++  P  + + +  + K
Sbjct: 874  STAYEFSIKSEEWMNGPLFLLNAEQIAEEIGNMWRTTYKLIKTLSDVPAPRRLAENVKIK 933

Query: 172  LESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSLKNMLDLGIRNILPKLEE 231
            ++ F++ +PIL    NPGM++RHW+ +S+ +G +I P + T L NML+ G    + KLE 
Sbjct: 934  IDKFKQYIPILSISCNPGMKDRHWQQISEIVGYEIKPTETTCLSNMLEFGFGKFVEKLEP 993

Query: 232  VSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTM 291
            +  +ASKE  L ++L++M  +W ++    V YRDT T I+   D+IQ++LDDH+++ QTM
Sbjct: 994  IGAAASKEYSLEKNLDRMKLDWVNVTFSFVKYRDTDTNILCAIDDIQMLLDDHVIKTQTM 1053

Query: 292  RGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEESRNF 351
             GSP+IKP E E   WE KLI +QD LD WL+ Q TW+YLEPIFSSEDI+ QMPEE R F
Sbjct: 1054 CGSPFIKPIEAECRKWEEKLIRIQDNLDAWLKCQATWLYLEPIFSSEDIIAQMPEEGRKF 1113

Query: 352  KTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRLFFPR 411
              VD  WK++M    KD  IL A +   M +   + N +LE IQKGLNDYLEKKRLFFPR
Sbjct: 1114 GIVDSYWKSLMSQAVKDNRILVAADQPRMAEKLQEANFLLEDIQKGLNDYLEKKRLFFPR 1173

Query: 412  FFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEKVALSGL 471
            FFFLSNDELLEILSETKDPLRVQPHLKK FEGI  LE++D+LEI+GMIS E E V     
Sbjct: 1174 FFFLSNDELLEILSETKDPLRVQPHLKKCFEGIAKLEFTDNLEIVGMISSEKETVPFIQK 1233

Query: 472  IRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVVWVTKWPGMVVICVSSIT 531
            I P +AKG+VEKWLQQVE +M+ S++++  + + AY K  R  WV +WPG VVICVSSI 
Sbjct: 1234 IYPANAKGMVEKWLQQVEQMMLASMREVIGLGIEAYVKVPRNHWVLQWPGQVVICVSSIF 1293

Query: 532  WTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVAS 591
            WT EV +A+    L   L KS  QI  +V  VRGKL    R+T+ AL VIDVHA++VVA 
Sbjct: 1294 WTQEVSQALAENTLLDFLKKSNDQIAQIVQLVRGKLSSGARLTLGALTVIDVHARDVVAK 1353

Query: 592  LVESKVTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYEYLGNSDRLVITPLTDRCYR 651
            L E +V+ + DF W+SQLRYY V   V V +ITT   YGYEYLGNS RLVITPLTDRCYR
Sbjct: 1354 LSEDRVSDLNDFQWISQLRYYWVAKDVQVQIITTEALYGYEYLGNSPRLVITPLTDRCYR 1413

Query: 652  TLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSD 695
            TLM ALKL+LGGAPEGPAGTGKTET+KDLAKA+AKQC+VFNCSD
Sbjct: 1414 TLMGALKLNLGGAPEGPAGTGKTETTKDLAKALAKQCVVFNCSD 1457

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Homo sapiens (taxid: 9606)

>sp|Q8WXX0|DYH7_HUMAN Dynein heavy chain 7, axonemal OS=Homo sapiens GN=DNAH7 PE=1 SV=2

 Score =  626 bits (1614), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 316/619 (51%), Positives = 427/619 (68%), Gaps = 2/619 (0%)

Query: 79   QINEEQELLKMVRTNYETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIK 138
            Q N E+E    + + Y    ++ + L P+ +L+   +EF  +   W EGP+  +N D+++
Sbjct: 738  QFNAEEEAFGWLPSVYPQRKKIQDGLNPYLRLYETAVEFSSNYRAWTEGPYHKVNPDQVE 797

Query: 139  DKTDFMFRELNQLARKMTRAPGCKMVNDLTRSKLESFRKEVPILQCISNPGMEERHWKIL 198
                  +R L +L +    +P    +    RSK+E F++ +P++Q I NPG+  RHW+ +
Sbjct: 798  ADIGNYWRGLYKLEKTFHDSPYALAMTKKVRSKVEDFKQHIPLIQVICNPGLRPRHWEAM 857

Query: 199  SDELGQDITPNDQTSLKNMLDLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEWSDIKL 258
            S  +G  + P+D +++ + LD+ +   + + E +S +ASKE  L +++ KM+TEW  ++ 
Sbjct: 858  SAIVGYPLQPSDDSTVSSFLDMNLEPYIDRFEGISEAASKEYSLEKAMEKMITEWDAVEF 917

Query: 259  DVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDIL 318
             +  YR+TGT+I+   DEIQ++LDDHI++ QTMRGSP+IKP+E +M  WE KL+ +Q+IL
Sbjct: 918  VIHSYRETGTFILASVDEIQMLLDDHIIKTQTMRGSPFIKPYEKQMREWEGKLLLLQEIL 977

Query: 319  DIWLQVQGTWMYLEPIFSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEME 378
            D WL+VQ TW+YLEPIFSS DIM QMPEE R F  VD+ W+ IM  V +D H+L    ++
Sbjct: 978  DEWLKVQATWLYLEPIFSSPDIMSQMPEEGRRFTAVDKTWRDIMRSVMQDKHVLTVVTID 1037

Query: 379  DMLKNFNKCNLMLELIQKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLK 438
             ML+   K N +LELI KGLN+YLEKKRLFFPRFFFLSNDELLEILSETKDP RVQPHLK
Sbjct: 1038 RMLERLKKSNELLELILKGLNEYLEKKRLFFPRFFFLSNDELLEILSETKDPTRVQPHLK 1097

Query: 439  KIFEGINLLEYSDSLEIIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLMIKSLQD 498
            K FEGI  +E++++L+I  M S EGE V L  +I    A+G VEKWL ++E +MI S+  
Sbjct: 1098 KCFEGIAKVEFTETLDITHMKSSEGEVVELIEIISTAKARGQVEKWLVELERVMINSIHK 1157

Query: 499  ICMMALGAYYKSERVVWVTKWPGMVVICVSSITWTAEVEKAIQG--RKLDAMLDKSVKQI 556
            +   A  AY K ER+ WV  WPG  V+CVS I WT EV+ AI    + L+  L    +QI
Sbjct: 1158 VTGDATFAYTKYERINWVRDWPGQTVLCVSQIFWTKEVQTAIPMGIKALEQYLKTCNRQI 1217

Query: 557  DIMVIKVRGKLLMSERITICALIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYYNVNN 616
            D +V  VRGKL M  R+T+ AL+V+DVHA++V++SLV+  ++   DF W+SQLRYY   N
Sbjct: 1218 DDIVTLVRGKLSMQNRVTLGALVVLDVHARDVLSSLVKKNISDDSDFEWLSQLRYYWQEN 1277

Query: 617  LVNVCMITTTVQYGYEYLGNSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTET 676
             +   MI   ++YGYEYLGNS RLVITPLTDRCYRTL  AL LHLGGAPEGPAGTGKTET
Sbjct: 1278 HLETKMINAGLRYGYEYLGNSPRLVITPLTDRCYRTLFGALHLHLGGAPEGPAGTGKTET 1337

Query: 677  SKDLAKAVAKQCIVFNCSD 695
            +KDLAKAVAKQC+VFNCSD
Sbjct: 1338 TKDLAKAVAKQCVVFNCSD 1356

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.

Homo sapiens (taxid: 9606)

>sp|Q8BW94|DYH3_MOUSE Dynein heavy chain 3, axonemal OS=Mus musculus GN=Dnah3 PE=1 SV=2

 Score =  625 bits (1611), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 335/644 (52%), Positives = 435/644 (67%)

Query: 52   TTEEFKKAHKEVLTLLDLLQKDRTTARQINEEQELLKMVRTNYETVDEMLERLEPFDQLW 111
            TTEE K   +++  L   L    T    IN+E+ELL+  ++++  +  ++    P++QLW
Sbjct: 781  TTEEMKNNVEKLHDLSKNLDLALTEFELINKEEELLEKEKSSFPLLQTLMINKIPYEQLW 840

Query: 112  SIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSK 171
                EF   S+ WM GP   +NA++I ++   M+R   +L + +   P  K + +  + K
Sbjct: 841  VTAYEFSTKSEEWMNGPLYLMNAEQIAEEIGNMWRTTYKLTKTLIDVPAPKRLAENVKLK 900

Query: 172  LESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSLKNMLDLGIRNILPKLEE 231
            +E F++ +PIL    NPGM++RHW+ +SD +G +I P + T L NML+ G    + KLE 
Sbjct: 901  IEKFKQHIPILNIACNPGMKDRHWQQISDIVGYEIKPTETTCLANMLEYGFGKFVDKLEP 960

Query: 232  VSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTM 291
            +  +ASKE  L ++L KM  +W ++    V YRDT T I+   D+IQ++LDDH+++ QTM
Sbjct: 961  IGAAASKEYSLEKNLEKMKADWVNMCFSFVKYRDTDTSILCAVDDIQLILDDHVIKTQTM 1020

Query: 292  RGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEESRNF 351
             GS +IKP E E   WE KL+ +Q+ LD WL+ Q TW+YLEPIFSSEDI+ QMPEE + F
Sbjct: 1021 CGSVFIKPIEAECRKWEEKLVRVQENLDAWLKCQVTWLYLEPIFSSEDIIAQMPEEGKKF 1080

Query: 352  KTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRLFFPR 411
             TVD  WK++M     D  ++ A +   M +   + N++LE IQ+GLNDYLEKKRLFFPR
Sbjct: 1081 TTVDTYWKSLMAQAVNDTRVMVAADQPRMTEKLQEANVLLEDIQRGLNDYLEKKRLFFPR 1140

Query: 412  FFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEKVALSGL 471
            FFFLSNDELLEILSETKDPLRVQPHLKK FEGI  LE++D+LEI GMIS E E V     
Sbjct: 1141 FFFLSNDELLEILSETKDPLRVQPHLKKCFEGIAKLEFTDNLEIKGMISSEKETVPFIQT 1200

Query: 472  IRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVVWVTKWPGMVVICVSSIT 531
            I P  AKG+VEKWLQQVE +M+ S++ +    + AY +  R  WV +WPG VVICVSSI 
Sbjct: 1201 IYPVKAKGMVEKWLQQVEQVMLASMRQVIENGIEAYVQVPRNAWVLEWPGQVVICVSSIF 1260

Query: 532  WTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVAS 591
            WT EV +A+    L   L KS  QI  +V  VRGKL    R+T+ AL VIDVHA++VVA 
Sbjct: 1261 WTREVSEALVEDTLTDFLKKSNDQIAQIVELVRGKLSSGARLTLGALTVIDVHARDVVAK 1320

Query: 592  LVESKVTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYEYLGNSDRLVITPLTDRCYR 651
            L    +  + DF W+SQLRYY     V+V MITT   YGYEYLGNS RLVITPLTDRCYR
Sbjct: 1321 LRHDHINSLNDFQWISQLRYYWTEKNVHVQMITTEALYGYEYLGNSPRLVITPLTDRCYR 1380

Query: 652  TLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSD 695
            TLM ALKL+LGGAPEGPAGTGKTET+KDLAKA+AKQC+VFNCSD
Sbjct: 1381 TLMGALKLNLGGAPEGPAGTGKTETTKDLAKALAKQCVVFNCSD 1424

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Mus musculus (taxid: 10090)

>sp|Q63170|DYH7_RAT Dynein heavy chain 7, axonemal OS=Rattus norvegicus GN=Dnah7 PE=2 SV=2

 Score =  610 bits (1573), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 316/687 (45%), Positives = 447/687 (65%), Gaps = 9/687 (1%)

Query: 18   EKSVTGNTTEEFKKAHK-------EEHSKMLTAIEKSVTGNTTEEFKKAHKEVLTLLDLL 70
             + +  + TE++++  K       EE        E+  T    ++ ++  K+   L   L
Sbjct: 703  HRKIIKDKTEQYQEGLKLRCERFVEELESYAKQAEEFYTFGDLQDVQRYLKKAQVLNSKL 762

Query: 71   QKDRTTARQINEEQELLKMVRTNYETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFK 130
                    Q N E+E    + + Y    ++ + L P+ +L+   +EF      W EGP+ 
Sbjct: 763  DAAADKIEQFNAEEEAFGWIPSVYPQRKKIQDGLNPYLRLYETAVEFSTKHRAWTEGPYH 822

Query: 131  GLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSKLESFRKEVPILQCISNPGM 190
             +N D+++      +R L +L +    +P    +    R+++E F++ +P++Q I NPG+
Sbjct: 823  KVNPDQVEADVGNYWRGLYKLEKAFHDSPNALAMTKKVRARVEDFKQYIPLVQVICNPGL 882

Query: 191  EERHWKILSDELGQDITPNDQTSLKNMLDLGIRNILPKLEEVSLSASKEAELSQSLNKMV 250
              RHW+ +S  +G  + P+D +++ + +D+ +   L + E +S +ASKE  L +S++KM+
Sbjct: 883  RPRHWEAMSAIVGYPLQPSDDSTVFSFIDMNLEPFLDRFEGISEAASKEYSLEKSMDKMM 942

Query: 251  TEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESK 310
            TEW  ++  + PYR++GT+I+   D+IQ++LDDHI++ QTMRGSP+IKP+E +M  WE K
Sbjct: 943  TEWEAMEFVIHPYRESGTFILSAVDDIQMLLDDHIIKTQTMRGSPFIKPYEKQMREWEGK 1002

Query: 311  LINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPH 370
            L+ +Q+ILD WL+VQ TW+YLEPIFSS DIM QMPEE R F  VD+ W+ +M  V ++ H
Sbjct: 1003 LLLLQEILDEWLKVQATWLYLEPIFSSPDIMSQMPEEGRRFTAVDKTWRDVMKMVVQNKH 1062

Query: 371  ILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDP 430
            +L    +E ML+   K N +LELI KGLN+YLEKKRLFFPRFFFLSNDELLEILSETKDP
Sbjct: 1063 VLAVVTIERMLERMKKSNELLELILKGLNEYLEKKRLFFPRFFFLSNDELLEILSETKDP 1122

Query: 431  LRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVED 490
             RVQPHLKK FEGI  +E++++L+I  M S EGE V L   I    A+G VEKWL ++E 
Sbjct: 1123 TRVQPHLKKCFEGIARVEFTETLDITHMKSSEGEVVELVDTISTTKARGQVEKWLVELER 1182

Query: 491  LMIKSLQDICMMALGAYYKSERVVWVTKWPGMVVICVSSITWTAEVEKAI-QGRK-LDAM 548
            +MIKS+  +   A+ AY K+ R+ WV  WPG  V+CVS   WT EV+ AI  G K L+  
Sbjct: 1183 IMIKSIHKVIGDAITAYTKNARINWVRDWPGQTVLCVSQTFWTVEVQVAIPMGHKALEDY 1242

Query: 549  LDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVASLVESKVTQVEDFAWMSQ 608
            L K   QID +V  VRGKL    R+T+ AL+V+DVHA++V+A+LV+ +++   DF W+SQ
Sbjct: 1243 LGKCNHQIDDIVTLVRGKLSKQNRVTLGALVVLDVHARDVLANLVKKRISDDTDFEWLSQ 1302

Query: 609  LRYYNVNNLVNVCMITTTVQYGYEYLGNSDRLVITPLTDRCYRTLMSALKLHLGGAPEGP 668
            LRYY   N +   MI   ++YGYEYLGNS R+V+ P  D C+ TL  AL LHLGGAPEGP
Sbjct: 1303 LRYYWHENNLETKMINAGLRYGYEYLGNSPRMVLAPFCDYCFLTLFGALHLHLGGAPEGP 1362

Query: 669  AGTGKTETSKDLAKAVAKQCIVFNCSD 695
            AGTGKTET+KDLAKAVAKQC+VFNCSD
Sbjct: 1363 AGTGKTETTKDLAKAVAKQCVVFNCSD 1389

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.

Rattus norvegicus (taxid: 10116)

>sp|Q6ZR08|DYH12_HUMAN Dynein heavy chain 12, axonemal OS=Homo sapiens GN=DNAH12 PE=2 SV=2

 Score =  588 bits (1516), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 319/649 (49%), Positives = 428/649 (65%), Gaps = 7/649 (1%)

Query: 54   EEFKKAHKEVLTLLDLLQKDRTTARQINEEQELLKMVRTNYETVDEMLERLEPFDQLWSI 113
            E  ++   +V  L   +Q+     + IN+E+EL K   T Y  +D++   +EP+ + ++ 
Sbjct: 633  ERMQQYVTDVRQLQKRIQESEEAVQFINKEEELFKWELTKYPELDKLKVNIEPYQKFFNF 692

Query: 114  ILEFRESSDLWMEGPFKGLNADEIK-DKTDF---MFRELNQLARKMTRAPGCKMVNDLTR 169
            +L+++ S   WM+G F  LN + ++ D  +F   +F+ L     K+ +    K      R
Sbjct: 693  VLKWQRSEKRWMDGGFLDLNGESMEADVEEFSREIFKTLKFFQTKLKKELQEKRKAARKR 752

Query: 170  SKLESFRKEVPILQC-ISNPGMEERHWKILSDELGQDITPNDQTSLKNMLDLGIRNILPK 228
            S  E   +E P     I+   M  RHWK +S+ +G D+TP+  T+L+ +L L +   L +
Sbjct: 753  SLEEEKIEEEPKDNATITMCRMRARHWKQISEIVGYDLTPDSGTTLRKVLKLNLTPYLEQ 812

Query: 229  LEEVSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRA 288
             E +S  ASKE  L +++N M+  W DI   +  YRDTG  I+   DEIQ +LDD I++ 
Sbjct: 813  FEVISAGASKEFSLEKAMNTMIGTWEDIAFHISLYRDTGVCILSSVDEIQAILDDQIIKT 872

Query: 289  QTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEES 348
            QTMRGSP+IKPFE E++AWE +LI +Q+ +D WL+VQ  W+YLEPIF SEDIM+QMPEE 
Sbjct: 873  QTMRGSPFIKPFEHEIKAWEDRLIRIQETIDEWLKVQAQWLYLEPIFCSEDIMQQMPEEG 932

Query: 349  RNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRLF 408
            R F+TVD+ W+ IM F  KDP +L AT +  +L+    CN +LE I KGLN YLEKKRLF
Sbjct: 933  RQFQTVDRHWRDIMKFCAKDPKVLAATSLTGLLEKLQNCNELLEKIMKGLNAYLEKKRLF 992

Query: 409  FPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEKVAL 468
            FPRFFFLSNDE+LEILSETKDPLRVQPHLKK FEGI  LE+  +L+I  M S EGE+V L
Sbjct: 993  FPRFFFLSNDEMLEILSETKDPLRVQPHLKKCFEGIAKLEFLPNLDIKAMYSSEGERVEL 1052

Query: 469  SGLIRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVVWVTKWPGMVVICVS 528
              LI  + A+G VEKWL QVEDLM++S+ D+   A  AY +S R  WV +WPG VV+C+S
Sbjct: 1053 IALISTSAARGAVEKWLIQVEDLMLRSVHDVIAAARLAYPESARRDWVREWPGQVVLCIS 1112

Query: 529  SITWTAEVEKAIQG--RKLDAMLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAK 586
             + WT+E ++ I G    L     +   Q++ +V  VRGKL    R T+ AL+ IDVHA+
Sbjct: 1113 QMFWTSETQEVISGGTEGLKKYYKELQNQLNEIVELVRGKLSKQTRTTLGALVTIDVHAR 1172

Query: 587  EVVASLVESKVTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYEYLGNSDRLVITPLT 646
            +VV  +++  V+   DF W++QLRYY  N    V +I   V+Y YEYLGNS RLVITPLT
Sbjct: 1173 DVVMDMIKMGVSHDTDFLWLAQLRYYWENENARVRIINCNVKYAYEYLGNSPRLVITPLT 1232

Query: 647  DRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSD 695
            DRCYRTL+ A  L+LGGAPEGPAGTGKTET+KDLAKA+A QC+VFNCSD
Sbjct: 1233 DRCYRTLIGAFYLNLGGAPEGPAGTGKTETTKDLAKALAVQCVVFNCSD 1281

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Homo sapiens (taxid: 9606)

>sp|Q923J6|DYH12_RAT Dynein heavy chain 12, axonemal OS=Rattus norvegicus GN=Dnah12 PE=2 SV=2

 Score =  584 bits (1505), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 310/639 (48%), Positives = 422/639 (66%), Gaps = 5/639 (0%)

Query: 62   EVLTLLDLLQKDRTTARQINEEQELLKMVRTNYETVDEMLERLEPFDQLWSIILEFRESS 121
            +V  L   +Q      + IN+E+EL K   T Y  ++++   +EP+ + ++ +L+++ + 
Sbjct: 641  DVRHLQKRIQDSEEAVQFINKEEELFKWELTKYPELEKLKVTIEPYQKFFNFVLKWQRTE 700

Query: 122  DLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSKLESFRKEVPI 181
              WM+G F  LN + ++   D   RE+ +  +        ++      ++  S  +E P 
Sbjct: 701  KRWMDGGFLDLNGESMEADIDEFSREVFKTLKFFQTKQKKELQEKRKAARKRSLMEEKPE 760

Query: 182  LQCISNPG---MEERHWKILSDELGQDITPNDQTSLKNMLDLGIRNILPKLEEVSLSASK 238
             +   +P    M  RHWK +S+ +G D+TP+  T+L+ +L L +   L   E +S  ASK
Sbjct: 761  EEPKESPTITMMRARHWKQMSEIVGYDLTPDSGTTLRKVLKLNLTPYLESFEVISAGASK 820

Query: 239  EAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIK 298
            E  L +++N M+  W DI   +  YRDTG YI+   DEIQ +LDD I++ QTMRGSP+IK
Sbjct: 821  EFSLERAMNAMIATWDDISFHISLYRDTGVYILSSVDEIQAILDDQIIKTQTMRGSPFIK 880

Query: 299  PFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEESRNFKTVDQIW 358
            PFE E++AWE +LI +Q+ +D WL+VQ  W+YLEPIF SEDIM+QMPEE R F+TVD+ W
Sbjct: 881  PFENEIKAWEDRLIRIQETIDEWLKVQAQWLYLEPIFCSEDIMQQMPEEGRQFQTVDRHW 940

Query: 359  KTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRLFFPRFFFLSND 418
            K IM F  KDP +L AT +  +L+    CN +L+ I KGLN YLEKKRLFFPRFFFLSND
Sbjct: 941  KDIMKFCAKDPKVLAATSLTGLLEKLQNCNDLLDKIMKGLNAYLEKKRLFFPRFFFLSND 1000

Query: 419  ELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEKVALSGLIRPNDAK 478
            E+LEILSETKDPLRVQPHLKK FEGI  LE+  +L+I  M S EGE+V L  +I  + A+
Sbjct: 1001 EMLEILSETKDPLRVQPHLKKCFEGIAKLEFLTNLDIKAMYSSEGERVELISVISTSAAR 1060

Query: 479  GLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVVWVTKWPGMVVICVSSITWTAEVEK 538
            G VEKWL QVEDLM++S+ D+   +  AY +S R  WV +WPG VV+CVS + WT+E ++
Sbjct: 1061 GAVEKWLIQVEDLMLRSIHDVIAASRLAYPESARKDWVREWPGQVVLCVSQMFWTSETQE 1120

Query: 539  AIQG--RKLDAMLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVASLVESK 596
             I G    L     +   Q++ +V  VRGKL    RIT+ AL+ IDVHA++VV  +++  
Sbjct: 1121 VISGGNEGLKKYYKELQYQLNDIVELVRGKLSKQTRITLGALVTIDVHARDVVMDMIDMG 1180

Query: 597  VTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYEYLGNSDRLVITPLTDRCYRTLMSA 656
            V+   DF W++QLRYY       V ++   V+Y YEYLGNS RLVITPLTDRCYRTL+ A
Sbjct: 1181 VSHDTDFQWLAQLRYYWEYENARVRIVNCNVKYAYEYLGNSPRLVITPLTDRCYRTLIGA 1240

Query: 657  LKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSD 695
              L+LGGAPEGPAGTGKTET+KDLAKA+A QC+VFNCSD
Sbjct: 1241 FYLNLGGAPEGPAGTGKTETTKDLAKALAVQCVVFNCSD 1279

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Rattus norvegicus (taxid: 10116)

>sp|Q63164|DYH1_RAT Dynein heavy chain 1, axonemal OS=Rattus norvegicus GN=Dnah1 PE=2 SV=2

 Score =  557 bits (1435), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 284/681 (41%), Positives = 423/681 (62%), Gaps = 11/681 (1%)

Query: 27   EEFKKAH---KEEHSKMLTAIEKSVTGNTTE-EFKKAHK---EVLTLLDLLQKDRTTARQ 79
            E+F+K     +    + L  ++  V G +T  E  +AH+   EV  +   L+  +  A  
Sbjct: 1142 EKFRKIQLMDQNNFQEKLEGLQLVVAGFSTHVEIARAHEIANEVRRVKKQLKDCQQLAML 1201

Query: 80   INEEQELLKMVRTNYETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKD 139
             N  + +  +  TNY+ +  M++  +P+  LW+   ++   S+ WM  P   ++A++++ 
Sbjct: 1202 YNNRERIFGLPITNYDKLSRMVKEFQPYLDLWTTASDWLRWSESWMNDPLSAIDAEQLEK 1261

Query: 140  KTDFMFRELNQLARKMTRAPGCKMVNDLTRSKLESFRKEVPILQCISNPGMEERHWKILS 199
                 F+ +++  ++    P C+ V    R++++ F+  +P++Q + NPGM  RHW++LS
Sbjct: 1262 NVIESFKTMHKCVKQFKDIPACQDVALDIRARIDEFKPYIPLIQGLRNPGMRNRHWEVLS 1321

Query: 200  DELGQDITPNDQTSLKNMLDLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEWSDIKLD 259
            +E+  ++ P    +    L++ +++ +  + +V+  A KE  + Q+L+KM  EW+ I  +
Sbjct: 1322 NEININVRPKANLTFARCLEMNLQDYIESISKVAEVAGKEYAIEQALDKMEKEWASILFN 1381

Query: 260  VVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILD 319
            V+PY++T TYI++  DE   +LDDHI+  Q+M  SPY KPFE  + +WE+KL   Q++L+
Sbjct: 1382 VLPYKETDTYILKSPDEASQLLDDHIVMTQSMSFSPYKKPFEQRINSWETKLKLTQEVLE 1441

Query: 320  IWLQVQGTWMYLEPIFSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMED 379
             WL  Q +W+YLEPIFSSEDI RQ+P ES+ ++T+++IW+ IM    ++  ++     + 
Sbjct: 1442 EWLNCQRSWLYLEPIFSSEDITRQLPVESKRYQTMERIWRKIMKNAYENREVINVCSDQR 1501

Query: 380  MLKNFNKCNLMLELIQKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKK 439
            +L +   CN +L+L+QKGL++YLE KR  FPRF+FLS+DELLEILS+TKDP  VQPHL+K
Sbjct: 1502 LLDSLRDCNKLLDLVQKGLSEYLETKRTAFPRFYFLSDDELLEILSQTKDPTAVQPHLRK 1561

Query: 440  IFEGINLLEYSDSLEIIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLMIKSLQDI 499
             FE I  L + + LEI  M S EGE+V LS  I P+     VE WL +VE  M  S+ DI
Sbjct: 1562 CFENIARLLFQEDLEITHMYSAEGEEVKLSFSIYPSSN---VEDWLLEVERSMKASVHDI 1618

Query: 500  CMMALGAYYKSERVVWVTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKSV-KQIDI 558
              MA+ AY    R  WV  WPG V I      WT EV +A++   + + L   + KQ+  
Sbjct: 1619 IEMAIKAYPTMLRTEWVLSWPGQVTIAGCQTYWTLEVAQALEASSISSSLFPQLSKQLSD 1678

Query: 559  MVIKVRGKLLMSERITICALIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYYNVNNLV 618
            +V  VRGKL   +R+ + ALIVI+VHAK+VV+ L++  V  V DF W+SQLRYY  NN +
Sbjct: 1679 LVALVRGKLSRMQRMVLSALIVIEVHAKDVVSKLIDENVVSVHDFEWISQLRYYWTNNDL 1738

Query: 619  NVCMITTTVQYGYEYLGNSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSK 678
             +  +     YGYEYLGNS RLVITPLTDRCY TL  AL L  GGAP GPAGTGKTET+K
Sbjct: 1739 YIRAVNAEFIYGYEYLGNSGRLVITPLTDRCYLTLTGALHLKFGGAPAGPAGTGKTETTK 1798

Query: 679  DLAKAVAKQCIVFNCSDRPTF 699
            DL KA+A Q +VFNCSD+  F
Sbjct: 1799 DLGKALAIQTVVFNCSDQLDF 1819

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Rattus norvegicus (taxid: 10116)

>sp|Q9P2D7|DYH1_HUMAN Dynein heavy chain 1, axonemal OS=Homo sapiens GN=DNAH1 PE=2 SV=4

 Score =  546 bits (1406), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 290/707 (41%), Positives = 426/707 (60%), Gaps = 15/707 (2%)

Query: 3    ISRTWKEHSKMLTAIE--KSVTGNTTEEFKKAH---KEEHSKMLTAIEKSVTGNTTE-EF 56
            I+  W   SK+L  IE  +       E+F+K     +    + L  ++  V G +   E 
Sbjct: 912  IASNWP--SKILGQIELVQQQHVEDEEKFRKIQIMDQNNFQEKLEGLQLVVAGFSIHVEI 969

Query: 57   KKAHK---EVLTLLDLLQKDRTTARQINEEQELLKMVRTNYETVDEMLERLEPFDQLWSI 113
             +AH+   EV  +   L+  +  A   N  + +  +  TNY+ +  M++  +P+  LW+ 
Sbjct: 970  SRAHEIANEVRRVKKQLKDCQQLAMLYNNRERIFSLPITNYDKLSRMVKEFQPYLDLWTT 1029

Query: 114  ILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSKLE 173
              ++   S+ WM  P   ++A++++      F+ +++  ++    P C+ V    R+++E
Sbjct: 1030 ASDWLRWSESWMNDPLSAIDAEQLEKNVVEAFKTMHKCVKQFKDMPACQEVALDIRARIE 1089

Query: 174  SFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSLKNMLDLGIRNILPKLEEVS 233
             F+  +P++Q + NPGM  RHW+ LS+++  ++ P    +    L++ +++ +  + +V+
Sbjct: 1090 EFKPYIPLIQGLRNPGMRIRHWETLSNQININVRPKANLTFARCLEMNLQDHIESISKVA 1149

Query: 234  LSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRG 293
              A KE  + Q+L+KM  EWS I  +V+PY+ T TYI++  DE   +LDDHI+  Q M  
Sbjct: 1150 EVAGKEYAIEQALDKMEKEWSTILFNVLPYKATDTYILKSPDEASQLLDDHIVMTQNMSF 1209

Query: 294  SPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEESRNFKT 353
            SPY KPFE  + +WE+KL   Q++L+ WL  Q +W+YLEPIFSSEDI +Q+P ES+ ++T
Sbjct: 1210 SPYKKPFEQRINSWENKLKLTQEVLEEWLNCQRSWLYLEPIFSSEDINQQLPVESKRYQT 1269

Query: 354  VDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRLFFPRFF 413
            +++IWK IM    ++  ++       ML +   CN +L+L+QKGL++YLE KR  FPRF+
Sbjct: 1270 MERIWKKIMKNAYENREVINVCSDLRMLDSLRDCNKILDLVQKGLSEYLETKRSAFPRFY 1329

Query: 414  FLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEKVALSGLIR 473
            FLS+DELLEILS+TKDP  VQPHL+K FE I  L + + LEI  M S EGE+V L   I 
Sbjct: 1330 FLSDDELLEILSQTKDPTAVQPHLRKCFENIARLLFQEDLEITHMYSAEGEEVQLCFSIY 1389

Query: 474  PNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVVWVTKWPGMVVICVSSITWT 533
            P+     VE WL++VE  M  S+ DI   A+ AY    R  WV  WPG V I      WT
Sbjct: 1390 PSSN---VEDWLREVERSMKASVHDIIEKAIRAYPTMPRTQWVLNWPGQVTIAGCQTYWT 1446

Query: 534  AEVEKAIQGRKLDAML-DKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVASL 592
             EV +A++   L + L  +  +Q+  +V  VRGKL   +R  + ALIVI+VHAK+VV+ L
Sbjct: 1447 MEVAEALEAGNLRSQLFPQLCQQLSDLVALVRGKLSRMQRAVLSALIVIEVHAKDVVSKL 1506

Query: 593  VESKVTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYEYLGNSDRLVITPLTDRCYRT 652
            ++  V  V DF W+SQLRYY  NN + +  +     YGYEYLGNS RLVITPLTDRCY T
Sbjct: 1507 IQENVVSVNDFQWISQLRYYWTNNDLYIRAVNAEFIYGYEYLGNSGRLVITPLTDRCYLT 1566

Query: 653  LMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPTF 699
            L  AL L  GGAP GPAGTGKTET+KDL KA+A Q +VFNCSD+  F
Sbjct: 1567 LTGALHLKFGGAPAGPAGTGKTETTKDLGKALAIQTVVFNCSDQLDF 1613

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Homo sapiens (taxid: 9606)

>sp|P0C6F1|DYH2_MOUSE Dynein heavy chain 2, axonemal OS=Mus musculus GN=Dnah2 PE=2 SV=1

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 247/614 (40%), Positives = 376/614 (61%), Gaps = 26/614 (4%)

Query: 99   EMLER-LEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTR 157
            ++LE+ L+   Q+W I  ++ ES + W  G F+ L  + ++     +FR L +LA++  +
Sbjct: 1256 QILEKELDALQQVWEITRDWEESWNQWKMGCFQTLQTEAMESMAHGLFRRLTRLAKEY-K 1314

Query: 158  APGCKMVNDLTRSKLESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQT-SLKN 216
                +++ + TRSK+E F++ +P++  + NP + ERHW  + +E+ ++     ++ +L+ 
Sbjct: 1315 DRNWEII-ETTRSKIEQFKRTMPLISDLRNPALRERHWDQVKEEVQREFDQESESFTLEQ 1373

Query: 217  MLDLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDE 276
            ++ LG+   + K+ E+S SA+KE  +   L  +   W   +LD+VPY+D G + ++GT+E
Sbjct: 1374 IVKLGMDQHVEKIAEISASATKELAIEVGLQNIAKTWDSTQLDIVPYKDKGHHRLRGTEE 1433

Query: 277  IQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIFS 336
            +   L+D+ +   TM+ S ++K FE +++ WE  L  + +++++ L VQ  WMYLE IF 
Sbjct: 1434 VFQALEDNQVALSTMKASRFVKAFEKDVDHWERCLSLILEVIEMVLTVQRQWMYLENIFL 1493

Query: 337  SEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQK 396
             EDI +Q+P ES  F  V+  WK IM  +NKD + L++T    +L+   + N +LE IQK
Sbjct: 1494 GEDIRKQLPNESALFDQVNNNWKAIMDRMNKDNNALRSTHYPGLLETLIEMNAILEDIQK 1553

Query: 397  GLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEY------S 450
             L+ YLE KR  FPRF+FLSND+LLEIL ++++P  VQPHLKK F+ I LL+       S
Sbjct: 1554 SLDMYLETKRHIFPRFYFLSNDDLLEILGQSRNPEAVQPHLKKCFDNIKLLKIQKVGGSS 1613

Query: 451  DSLEIIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLMIKSLQDI---CMMALGAY 507
               E +GM S +GE +     + P   +G VE WL  VE  M  +L+D+   C +AL  +
Sbjct: 1614 SKWEAVGMFSGDGEYI---DFLHPVLLEGPVESWLGDVERAMRMTLRDLLRNCRVALKKF 1670

Query: 508  YKSERVVWVTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKSVKQIDIM---VIKVR 564
              ++R  WV  W G VVI  S I WTA+V K +   K  +  DK + ++ I+      +R
Sbjct: 1671 L-NKRDKWVKDWAGQVVITASQIQWTADVTKCLMTAKERS--DKKILKVSILNKYSEAIR 1727

Query: 565  GKLLMSERITICALIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYYNVNNLVNVCMI- 623
            G L    R+ I AL+ I++HA++V+  L +S +  V  F W+SQLR+Y   + V+ C+I 
Sbjct: 1728 GNLTKIMRLKIVALVTIEIHARDVLEKLYKSGLMDVSSFDWLSQLRFYWEKD-VDDCIIR 1786

Query: 624  --TTTVQYGYEYLGNSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLA 681
               T  QYGYEYLGNS RLVITPLTDRCY TL +AL LH GG+P+GPAGTGKTET KDL 
Sbjct: 1787 QTNTQFQYGYEYLGNSGRLVITPLTDRCYMTLTTALHLHRGGSPKGPAGTGKTETVKDLG 1846

Query: 682  KAVAKQCIVFNCSD 695
            KA+    IV NCS+
Sbjct: 1847 KALGIYVIVVNCSE 1860

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1513
242009351	4089	dynein beta chain, ciliary, putative [Pe	0.436	0.161	0.570	0.0
345305377	3982	PREDICTED: dynein heavy chain 3, axonema	0.511	0.194	0.505	0.0
328716380	4071	PREDICTED: dynein heavy chain 3, axonema	0.424	0.157	0.563	0.0
405950869	4195	Dynein heavy chain 3, axonemal [Crassost	0.451	0.162	0.512	0.0
307211150	4021	Dynein heavy chain 3, axonemal [Harpegna	0.422	0.158	0.535	0.0
443686726	3077	hypothetical protein CAPTEDRAFT_157693,	0.553	0.272	0.447	0.0
91089257	4068	PREDICTED: similar to predicted protein	0.435	0.161	0.528	0.0
270011462	4101	hypothetical protein TcasGA2_TC005485 [T	0.435	0.160	0.528	0.0
340373841	3987	PREDICTED: dynein heavy chain 3, axonema	0.440	0.167	0.526	0.0
260824147	3769	hypothetical protein BRAFLDRAFT_127072 [	0.451	0.181	0.506	0.0

>gi|242009351|ref|XP_002425451.1| dynein beta chain, ciliary, putative [Pediculus humanus corporis] gi|212509287|gb|EEB12713.1| dynein beta chain, ciliary, putative [Pediculus humanus corporis]

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/662 (57%), Positives = 488/662 (73%), Gaps = 1/662 (0%)

Query: 35   EEHSKMLTAIEKSVTGN-TTEEFKKAHKEVLTLLDLLQKDRTTARQINEEQELLKMVRTN 93
            EEH K+L + +K      T EE K+A + V  L+  L+ D+  A  INEE++LL+   T 
Sbjct: 777  EEHQKILDSFKKKDPPLLTMEEMKEAVEAVEDLVQKLKDDKREAESINEEEQLLEWEITP 836

Query: 94   YETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLAR 153
            + ++  ML  +EPF QLW  + ++  +++ W  GPFKGL+ +EI+++ + +++ L +LA+
Sbjct: 837  FMSLGNMLVAVEPFQQLWRTVYDWHVNNERWYYGPFKGLDENEIREEVETVWKILYKLAK 896

Query: 154  KMTRAPGCKMVNDLTRSKLESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTS 213
                 PG K V ++ R+K+E FR+ +P+LQ I NPG+++RHW  +S  +G +I  +D  S
Sbjct: 897  TFHDIPGSKRVAEIVRAKVEKFRQYLPVLQAICNPGIQDRHWAQMSQLVGMEIEHSDTAS 956

Query: 214  LKNMLDLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQG 273
            L  M+++G+     KLEE+S++A+KE  L ++L KM  EW D+   + PYR+TGT+I+  
Sbjct: 957  LHEMIEIGMIKHSAKLEEISIAATKEYTLERALEKMKMEWDDVIFTLNPYRETGTHILSS 1016

Query: 274  TDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEP 333
             D+IQ+MLDDHIL+AQTMRGSPY+KPFE +M++WE KLI+MQDILD WL  Q TWMYLEP
Sbjct: 1017 IDDIQIMLDDHILKAQTMRGSPYVKPFERQMQSWEEKLISMQDILDAWLLCQSTWMYLEP 1076

Query: 334  IFSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLEL 393
            IFSSEDI+RQMPEE++ F+ VD+IWK IM     D H+L ATE  +MLKN  +CN +L+ 
Sbjct: 1077 IFSSEDILRQMPEEAKKFRKVDKIWKMIMKATLTDAHVLVATEQPNMLKNLRECNTLLDE 1136

Query: 394  IQKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSL 453
            IQKGLN+YLEKKRLFF RFFFLSNDELLEILSETKDP RVQPHLKK FEGI  LE++   
Sbjct: 1137 IQKGLNNYLEKKRLFFSRFFFLSNDELLEILSETKDPKRVQPHLKKCFEGIWTLEFTADE 1196

Query: 454  EIIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERV 513
            EII M S E E+V LSG I P +AKG+VEKWL QVE LM++S+++ICM A+ AY  ++R 
Sbjct: 1197 EIIAMNSAEHERVPLSGKIIPAEAKGMVEKWLSQVESLMLQSVREICMEAVSAYVSTKRE 1256

Query: 514  VWVTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKLLMSERI 573
             WV  WPG VVIC S+I WTAEV +AI+ + LD  L+K   QI+ +   VR  L    RI
Sbjct: 1257 KWVLSWPGQVVICGSTIHWTAEVSEAIEMQTLDKYLEKCQSQIENLTQLVRSPLTSGSRI 1316

Query: 574  TICALIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYEY 633
            TICALIVIDVHAK+VVA L +  V Q+ DF W+SQLRYY   + V V MITT V YG+EY
Sbjct: 1317 TICALIVIDVHAKDVVAQLCKLNVRQITDFNWVSQLRYYWRESTVIVSMITTDVNYGFEY 1376

Query: 634  LGNSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNC 693
            LGN+ RLVITPLTDRCYRTLM AL+LHLGGAPEGPAGTGKTETSKDLAKA+AKQC+VFNC
Sbjct: 1377 LGNTPRLVITPLTDRCYRTLMGALRLHLGGAPEGPAGTGKTETSKDLAKALAKQCVVFNC 1436

Query: 694  SD 695
            SD
Sbjct: 1437 SD 1438

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345305377|ref|XP_003428323.1| PREDICTED: dynein heavy chain 3, axonemal [Ornithorhynchus anatinus]

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/787 (50%), Positives = 520/787 (66%), Gaps = 13/787 (1%)

Query: 106  PFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVN 165
            P++QLW     F   S+ WM GP + LNADEI +    M+R + +L + +T  PG + + 
Sbjct: 789  PYEQLWMTAYHFYIKSETWMSGPLQDLNADEISEDIGNMWRTVYKLTKVLTDVPGPRRLA 848

Query: 166  DLTRSKLESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSLKNMLDLGIRNI 225
            +  + K++ F++ +PIL    N GM+ERHW+ +S+ +G +I  ++ T L +ML+ G+   
Sbjct: 849  ENLKIKIDKFKQHIPILSISCNKGMKERHWQQISEIVGYEIKLDENTCLLSMLEYGLYKF 908

Query: 226  LPKLEEVSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHI 285
            + KLE +  +ASKE  L +SL+KM +EW ++    V YRDT T I+   D+IQV+LDDHI
Sbjct: 909  IEKLEPIGAAASKEYSLEKSLDKMKSEWVNLAFCFVKYRDTDTSILSAIDDIQVLLDDHI 968

Query: 286  LRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQMP 345
            ++ QTM GSP++KP E E   WE KLI MQDILD WL+ Q TW+YLEPIFSSEDI+ QMP
Sbjct: 969  VKTQTMCGSPFVKPIEAECRKWEEKLIEMQDILDAWLKCQATWLYLEPIFSSEDIIAQMP 1028

Query: 346  EESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEKK 405
            EE R F  VD  WK IM    KD  +L ATE   ML+  ++ N +LE IQKGLNDYLEKK
Sbjct: 1029 EEGRKFGIVDSYWKNIMTQAVKDTRVLVATEQSRMLEKLHEANFLLEEIQKGLNDYLEKK 1088

Query: 406  RLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEK 465
            RLFFPRFFFLSNDELLEILSETKDPLRVQPHLKK FEGI  LE+++ LEI+GMIS E E 
Sbjct: 1089 RLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKCFEGIAKLEFTNELEIVGMISSEKEM 1148

Query: 466  VALSGLIRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVVWVTKWPGMVVI 525
            V  +  I P +AKG+VEKWL QVE +M++S++ +  + +  Y K  R  WV +WPG VVI
Sbjct: 1149 VPFTNKIYPAEAKGMVEKWLLQVEQMMLESIRHVIKLGIEDYAKVPRKEWVLQWPGQVVI 1208

Query: 526  CVSSITWTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHA 585
            CVSSI WT EV +A+  + L A L+K+  QI  +V  VRGKL    R+T+ AL VIDVHA
Sbjct: 1209 CVSSIYWTQEVAEAVTAKTLPAFLEKNNLQIAEIVELVRGKLSSGARLTLGALTVIDVHA 1268

Query: 586  KEVVASLVESKVTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYEYLGNSDRLVITPL 645
            ++VVA L + +V+ + DF W+SQLRY    + V V MITT   YGYEYLGNS RLVITPL
Sbjct: 1269 RDVVAKLAQDQVSDLSDFQWISQLRYSWEKDGVVVRMITTEALYGYEYLGNSPRLVITPL 1328

Query: 646  TDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPTFPPNLRP 705
            TDRCYRTLM ALKL+LGGAPEGPAGTGKTET+KDLAKA+AKQC+VFNCSD   +    + 
Sbjct: 1329 TDRCYRTLMGALKLNLGGAPEGPAGTGKTETTKDLAKALAKQCVVFNCSDGLDYKAMGKF 1388

Query: 706  SDLIIPTNV-TCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIIN 764
               +  +   +C   F     L   V MM       G+ ++     L+    + L   I 
Sbjct: 1389 FKGLAQSGAWSCFDEFNRIEALFRTVAMMVPDYALIGEISLYSMGFLD---SRSLAQKIV 1445

Query: 765  FSARTSSNITQEMIMAKLDRRRKGVYGPAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAII 824
             + R  S         +L  +    YG     K ++  AG+LK+KYP +DE V++LRA++
Sbjct: 1446 ATYRLCSE--------QLSSQHHYDYG-MRAVKSVLTAAGNLKLKYPAEDESVLLLRALL 1496

Query: 825  DVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKII 884
            D+N+ KFL QD+PLF GI  DLFPG+ LP  D + LI+ +   + KR  Q   W+IEKII
Sbjct: 1497 DINLAKFLAQDVPLFQGIISDLFPGVILPKPDYELLIQSLNKIIEKRKLQPVPWFIEKII 1556

Query: 885  QVYEMIL 891
            Q+YEM+L
Sbjct: 1557 QIYEMML 1563

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|328716380|ref|XP_001944438.2| PREDICTED: dynein heavy chain 3, axonemal-like [Acyrthosiphon pisum]

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/648 (56%), Positives = 473/648 (72%)

Query: 52   TTEEFKKAHKEVLTLLDLLQKDRTTARQINEEQELLKMVRTNYETVDEMLERLEPFDQLW 111
            T +E   A +EV  L D L++D   A+ IN  ++LL +  T Y  +  M+   E FD+LW
Sbjct: 776  TNDEIIAATEEVDRLTDFLKEDIAAAKSINHTEKLLDVEVTPYTHLYTMVTTSEQFDRLW 835

Query: 112  SIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSK 171
             I  +F+  +++W  GPF  LNA EIKD  D M++ L +LAR +   PG K V ++ R +
Sbjct: 836  HIAHDFQNYNEIWFNGPFHDLNAKEIKDMVDNMWKTLYKLARTLQDYPGSKRVAEIVRGQ 895

Query: 172  LESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSLKNMLDLGIRNILPKLEE 231
            ++ F+K +P+L  I NPG+ +RHW  +S  +G ++ PN+ ++L  M+++G+ + + KLEE
Sbjct: 896  VDDFKKYLPVLDTICNPGIHDRHWTEISKNVGVELHPNESSTLSQMVEIGLLDYIEKLEE 955

Query: 232  VSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTM 291
            +S+ A++E  L Q+L KM  EW  I+ +  PYRDTG  I+   D+IQVML+DHIL+AQTM
Sbjct: 956  ISVIATREYSLEQNLRKMKEEWIPIEFECSPYRDTGVSILTALDDIQVMLEDHILKAQTM 1015

Query: 292  RGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEESRNF 351
             GS YIKPFE EM+ WE KLI MQ+IL++W+ VQG WMYL PIFSSEDI RQMPEE+RNF
Sbjct: 1016 HGSIYIKPFEEEMDIWEKKLILMQEILNLWISVQGIWMYLGPIFSSEDINRQMPEEARNF 1075

Query: 352  KTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRLFFPR 411
            +TVD IW+ IM+   K+  +L+AT   +ML+    C++M E IQKGLN+YLEKKRLFFPR
Sbjct: 1076 RTVDGIWRHIMINTVKNNKVLEATNYPNMLQLLKTCSVMFEQIQKGLNEYLEKKRLFFPR 1135

Query: 412  FFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEKVALSGL 471
            FFFLSNDELLEILSETK+PLRVQPHLKK FEGI  L ++ S++I+GMIS +GE VA  G+
Sbjct: 1136 FFFLSNDELLEILSETKNPLRVQPHLKKCFEGIARLNFTKSIDIVGMISADGEVVAFDGI 1195

Query: 472  IRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVVWVTKWPGMVVICVSSIT 531
            I P +AKGLVEKWL QVE LM++S+ +I   A+  Y  + R  WV +WPGMVV+C ++I 
Sbjct: 1196 IYPAEAKGLVEKWLIQVESLMMQSINNIINDAVKKYANTNRSKWVLQWPGMVVLCAATIN 1255

Query: 532  WTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVAS 591
            WTAEVE A++ R L   L KS  QID +V  VRG L   ER T+CALIVIDVHA++VV +
Sbjct: 1256 WTAEVETAVEKRTLPVYLQKSNDQIDNLVSLVRGTLSKGERATVCALIVIDVHARDVVKN 1315

Query: 592  LVESKVTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYEYLGNSDRLVITPLTDRCYR 651
            L   K++ V DF W+SQLRYYN N+   V MITTT+ YG EYLGN+ RLVITPLTDRCYR
Sbjct: 1316 LKVLKISSVRDFNWISQLRYYNRNSKTTVSMITTTLDYGNEYLGNTPRLVITPLTDRCYR 1375

Query: 652  TLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPTF 699
            TLM ALKL+LGGAPEGPAGTGKTET+KDLAKA+AKQC+VFNCS+   F
Sbjct: 1376 TLMGALKLYLGGAPEGPAGTGKTETTKDLAKAIAKQCVVFNCSEGLDF 1423

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405950869|gb|EKC18828.1| Dynein heavy chain 3, axonemal [Crassostrea gigas]

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/706 (51%), Positives = 489/706 (69%), Gaps = 23/706 (3%)

Query: 7    WKEHSKMLTAIEKSVTGNTTEEFKKAHKEEHSKMLT-AIEKSVTG--NTTEEFKKAH--- 60
            W +H K +  +  S   N     ++ H EE  +  T A E+ +       E FKK     
Sbjct: 699  WPDHIKTVFELSTSRIAN-----RRDHIEEDLRKRTQAFEEKLNDYMKEVESFKKKEFLG 753

Query: 61   --------KEVLTLLDLLQKDRTTARQINEEQELLKMVRTNYETVDEMLERLEPFDQLWS 112
                    +++ T+ + L++ R    QIN+E++LL+  ++++  +  M    EP+++LW+
Sbjct: 754  EEAMRNNTEQLATINENLERARDELEQINKEEQLLEWEQSSFPNLQTMFTLKEPYERLWN 813

Query: 113  IILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSKL 172
               +F +  + W+ GPF+ LN++EI+++   M+R + +L ++ +   G + V D  ++K+
Sbjct: 814  TAYQFHQRHEQWLNGPFQNLNSEEIENEVGDMWRTMYKLTKQFSDQAGPRRVADTVKNKV 873

Query: 173  ESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSLKNMLDLGIRNILPKLEEV 232
            + F++ +PIL  I NPG+ +RHW+++S+ +G DI P  +TSL NML+ G+   L +LEE+
Sbjct: 874  DKFKQHLPILNTICNPGIRDRHWEMMSEIVGTDIKPQGETSLNNMLEFGLAKHLARLEEI 933

Query: 233  SLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMR 292
              +A+KE  L ++L KM  EW D+  +++PYR+TG  I+   DEIQV+LDDHI++AQTMR
Sbjct: 934  GAAAAKEHSLEKALEKMKLEWKDMMFEMIPYRETGVCILTAPDEIQVLLDDHIVKAQTMR 993

Query: 293  GSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEESRNFK 352
            GSP+IKPFE EM+ WE KL++MQDILD WL+ Q TW+YLEPIFSSEDI+ QMPEE R F 
Sbjct: 994  GSPFIKPFEQEMKEWEEKLVSMQDILDEWLKCQATWLYLEPIFSSEDILAQMPEEGRKFG 1053

Query: 353  TVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRLFFPRF 412
             VD  W+ IM    KD H L AT+  +ML  F   N++LE IQKGLN YLEKKRL+FPRF
Sbjct: 1054 IVDSYWRDIMTEAIKDTHCLVATDQPNMLSRFRDANVLLEEIQKGLNAYLEKKRLYFPRF 1113

Query: 413  FFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEKVALSGLI 472
            FFLSNDELLEILSETKDP+RVQPHLKK FEGI+ L+++D+ EI+GM+S E E V  +  I
Sbjct: 1114 FFLSNDELLEILSETKDPMRVQPHLKKCFEGISRLDFNDAQEILGMVSAENEIVPYNTKI 1173

Query: 473  RPNDAK--GLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVVWVTKWPGMVVICVSSI 530
             P  AK  G+VEKWL QVED+MI SL+ + M A  AY  + R  WV +WPG VVIC SSI
Sbjct: 1174 IPAKAKASGMVEKWLLQVEDVMISSLRKVIMDANEAYTSTPRNRWVLEWPGQVVICSSSI 1233

Query: 531  TWTAEVEKAIQGR-KLDAMLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVV 589
             WT+EV +A++ +  LD  L     QID +V  VRGKL    R+T+ AL VIDVHA++ V
Sbjct: 1234 YWTSEVTEAMKKKGGLDEYLLTCNGQIDQIVELVRGKLESGHRVTLGALTVIDVHARDTV 1293

Query: 590  ASLVESKVTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYEYLGNSDRLVITPLTDRC 649
              + ++KVT   DF W++QLRYY  N+++ V MITT ++YGYEYLGNS RLVITPLTDRC
Sbjct: 1294 KEMAKAKVTDPNDFMWLAQLRYYWENDVI-VRMITTDIKYGYEYLGNSGRLVITPLTDRC 1352

Query: 650  YRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSD 695
            YRTLM ALKL+LGGAPEGPAGTGKTET KDLAKAVAKQC+VFNCSD
Sbjct: 1353 YRTLMGALKLNLGGAPEGPAGTGKTETCKDLAKAVAKQCVVFNCSD 1398

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|307211150|gb|EFN87368.1| Dynein heavy chain 3, axonemal [Harpegnathos saltator]

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/644 (53%), Positives = 463/644 (71%)

Query: 52   TTEEFKKAHKEVLTLLDLLQKDRTTARQINEEQELLKMVRTNYETVDEMLERLEPFDQLW 111
            T EE ++A +E+  +   + + R  A +IN E+ LL M  + Y  +  M   ++ FD+LW
Sbjct: 722  TMEEMEQAVEEIEQIFKTMAEIRKEAEEINMEEGLLDMELSPYLELPTMSSTVDIFDRLW 781

Query: 112  SIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSK 171
             I L F ++ DLW  G F GL+A++++++TD  +R L +++R +   PG + V ++ R K
Sbjct: 782  HIALGFHQNYDLWYYGSFLGLDAEKVREETDETWRTLYKMSRMLADVPGARRVAEMVRGK 841

Query: 172  LESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSLKNMLDLGIRNILPKLEE 231
            +E F++ +P+LQ I  PG++ RHW+ +S+ +   I P D T+L +M++ G+   + KLEE
Sbjct: 842  VEKFQQFIPVLQIICTPGLQARHWQAISEIVEVSIMPTDTTTLSDMIEYGLTVHVGKLEE 901

Query: 232  VSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTM 291
            +S SA+KE  L +SL KM  EW D+  D++PYR+TG +I+   D+IQ +LDDH+L+AQTM
Sbjct: 902  ISSSATKEYALQRSLYKMKEEWKDVYFDLMPYRETGVFILTAVDDIQTLLDDHVLKAQTM 961

Query: 292  RGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEESRNF 351
            R SP++K FE EM+ WE KLI MQDI+D WL  Q TWMYLEPIFSSEDIMRQMP E+R+F
Sbjct: 962  RSSPFVKAFEREMQQWEEKLIAMQDIIDQWLLCQATWMYLEPIFSSEDIMRQMPSEARDF 1021

Query: 352  KTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRLFFPR 411
            + +D+ W+ IM  V  +  +L AT   +ML+ F  CN +LE IQ GLN+YLEKKRLFFPR
Sbjct: 1022 RKIDKTWRRIMAHVADNKRVLDATAFPNMLQEFRTCNKLLEEIQLGLNEYLEKKRLFFPR 1081

Query: 412  FFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEKVALSGL 471
             FFLSNDELLEILSETKDP RVQPHL+K FEGI+ L ++   EIIGM+S E E V LSG 
Sbjct: 1082 LFFLSNDELLEILSETKDPQRVQPHLRKCFEGISKLRFTKDEEIIGMLSEEDEYVPLSGK 1141

Query: 472  IRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVVWVTKWPGMVVICVSSIT 531
            I P DAKG+VE+WL QVE+LM+ S++DI   ++ AY+ + R  WV  WPG +VIC S + 
Sbjct: 1142 IYPADAKGMVERWLSQVEELMVISMRDIAEDSILAYFTAVREEWVLSWPGQIVICSSQVH 1201

Query: 532  WTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVAS 591
            WT+EV ++ + +   + L K   QI  +V  VRGKL    RIT+ ALIVIDVHA++VV  
Sbjct: 1202 WTSEVYESFEEQSTLSYLHKCNDQIQYIVDLVRGKLDRGARITLNALIVIDVHARDVVKL 1261

Query: 592  LVESKVTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYEYLGNSDRLVITPLTDRCYR 651
            LV++ VT   DF W++QLRYY +++ + V MITT + Y +EYLGN+ RLVITPLTDRCYR
Sbjct: 1262 LVDTGVTSPLDFNWIAQLRYYWMDDCITVSMITTDIMYAFEYLGNTPRLVITPLTDRCYR 1321

Query: 652  TLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSD 695
            TLM ALKL+LGGAPEGPAGTGKTETSKDLAKAVAKQC+VFNCS+
Sbjct: 1322 TLMGALKLNLGGAPEGPAGTGKTETSKDLAKAVAKQCVVFNCSE 1365

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443686726|gb|ELT89912.1| hypothetical protein CAPTEDRAFT_157693, partial [Capitella teleta]

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/898 (44%), Positives = 551/898 (61%), Gaps = 61/898 (6%)

Query: 54   EEFKKAHKEVLTLLDLLQKDRTTARQ---INEEQELLKMVR-TNYETVDEMLERLEPFDQ 109
            +   +A   +L L D  +K     R+   IN E++LL +   T Y  ++E+    EP+++
Sbjct: 206  DRMSEAESYLLMLQDTTRKLEDFTREVPRINLEEDLLNVGDPTPYNQIEEIAIAKEPYEK 265

Query: 110  LWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRA--PGCKMVNDL 167
            LWS  ++F    D W  GP   +NA+E++++   ++R   +L +        G       
Sbjct: 266  LWSAAVKFHVYYDKWFNGPLLQVNAEEVEEEVQSLWRTAYKLTKLFAHPEFKGPMRAAAT 325

Query: 168  TRSKLESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSLKNMLDLGIRNILP 227
             + KLE F+  +P++  + NPG+++RHW+++S ++G ++ PND T L +ML++ +   L 
Sbjct: 326  IKGKLEKFKINMPLINALCNPGIKDRHWEMMSVKVGFNLKPNDDTPLSDMLEMNLEKYLD 385

Query: 228  KLEEVSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILR 287
            ++ E+S  ASKE  L  +L KM  +W  I  + VPY+D G  I+   D+IQV+LDDHI++
Sbjct: 386  EMTEISSQASKEYALQMALEKMKADWEVIHFEFVPYKDKGIDILSAIDDIQVILDDHIVK 445

Query: 288  AQTMRGSPYIKPFETEMEAWESKLINM-QDILDIWLQVQGTWMYLEPIFSSEDIMRQMPE 346
              TM+ SP+IKPFE E+ +W+S+++ + + ILD WL+VQ  W+YLEPIF S+DI  Q+P 
Sbjct: 446  TTTMKNSPFIKPFEKEINSWDSRMVRLLKAILDSWLKVQAAWLYLEPIFGSQDIRNQIPV 505

Query: 347  ESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKR 406
            E + F+ VD+ WK IM     D   L  T+ + ML+       ML+ IQ+GLN+YLEKKR
Sbjct: 506  EGKMFEQVDKHWKDIMKNAVMDTKALVVTDQDSMLEKLQHSEGMLDDIQRGLNEYLEKKR 565

Query: 407  LFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEKV 466
            L+FPRFFFLSNDELLEILSETKDPLRVQPHLKK FEGI  L ++D   I GM S E E V
Sbjct: 566  LYFPRFFFLSNDELLEILSETKDPLRVQPHLKKCFEGIAQLTFTDDKIITGMESAEKELV 625

Query: 467  ALSGLIRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVVWVTKWPGMVVIC 526
             LS  I P DAKGLVE+WL QVED+M  SL+++   A+ AY KS R  WV +WPG VV+ 
Sbjct: 626  ILSKTIVPADAKGLVERWLLQVEDVMKLSLREVSSKAVVAYPKSPRQQWVLEWPGQVVLA 685

Query: 527  VSSITWTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAK 586
             S I WTAEV +AIQ   L   L KS  QID +V  VRGKL    RIT+ ALIVIDVHA+
Sbjct: 686  SSIIHWTAEVTQAIQCSTLSMYLGKSNLQIDQIVSHVRGKLSKMARITLGALIVIDVHAR 745

Query: 587  EVVASLVESKVTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYEYLGNSDRLVITPLT 646
            +VVASL E  VT ++DF+W+SQLRYY  ++ V V MITTTV YGYEYLGN+ RLVITPLT
Sbjct: 746  DVVASLNEQAVTSIDDFSWISQLRYYWEDDSVLVRMITTTVPYGYEYLGNTGRLVITPLT 805

Query: 647  DRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSD------RPTFP 700
            DRCYRTLM AL+L+LGGAPEGPAGTGKTET KDLAKAVAKQC+VFNCSD         F 
Sbjct: 806  DRCYRTLMGALQLNLGGAPEGPAGTGKTETCKDLAKAVAKQCVVFNCSDGLNYKAMSKFF 865

Query: 701  PNLRPSDL----------------IIPTNVTCMQNFFINLYLQNDVPMMFVG-------- 736
              L  S                  +I   V  +Q    +  L  +   MF G        
Sbjct: 866  KGLAQSGAWACFDEFNRIELEVLSVIAQQVQTIQRAIASCVLDGNKRFMFEGTQLVLDPS 925

Query: 737  --------PTGTGKSTIVLNL-LLNLSKDKYLPN--------IINFSARTSSNITQEMIM 779
                    P   G++ +  NL +L  +    +PN        + +     + ++ Q+++ 
Sbjct: 926  CTIFITMNPGYAGRAELPDNLKVLFRTVAMMVPNYGMIGEISLYSMGFVDARSLAQKIVA 985

Query: 780  A------KLDRRRKGVYGPAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLV 833
                   +L  +    YG     K ++  AG+LK++YPE+ E V++LR+I DVN+PKFL 
Sbjct: 986  TYLLCSEQLSSQHHYDYG-MRAVKSVLTAAGNLKLRYPEQKEDVLLLRSIKDVNLPKFLS 1044

Query: 834  QDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMIL 891
             D+PLF GI  DLFPG+ LP  D   L + +  ++ +++ QA  W+IEKIIQ+Y+MIL
Sbjct: 1045 HDIPLFEGIISDLFPGVALPSPDYGALEDALIRDIKEKHLQAVPWFIEKIIQIYDMIL 1102

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|91089257|ref|XP_969422.1| PREDICTED: similar to predicted protein [Tribolium castaneum]

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/660 (52%), Positives = 475/660 (71%), Gaps = 1/660 (0%)

Query: 37   HSKMLTAIEKSVTGN-TTEEFKKAHKEVLTLLDLLQKDRTTARQINEEQELLKMVRTNYE 95
            H KML A +K      T EE ++   +V  L+  L +D+  A QINEE++LL    + + 
Sbjct: 763  HEKMLVAFKKKDPPILTMEEMEECVAQVEDLVQKLHEDKQEADQINEEEQLLDFDPSAFL 822

Query: 96   TVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKM 155
             + +ML  +EP+D+LW  +LEF    D W  GPF  L+A+ + +  +  ++ L +LA+  
Sbjct: 823  NLQKMLTVVEPYDKLWHTVLEFHVQYDAWYYGPFADLDAEAVSEAVENTWKVLYKLAKTF 882

Query: 156  TRAPGCKMVNDLTRSKLESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSLK 215
               P  + + ++ R+K+E FR+ +P+LQ + N G+++RHW+ +S+ +G +I    + +L 
Sbjct: 883  HDNPAARRIAEMVRAKVEKFRQFLPVLQTVCNKGLQKRHWEAISELVGTEIVVTPELTLN 942

Query: 216  NMLDLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTD 275
            +M+++G+     +LE++S SA+KE EL ++L KM  EW+DIK +++PYR+TG  I+   D
Sbjct: 943  DMIEVGLPKFAAQLEDISASATKEYELEKNLKKMKEEWADIKFELIPYRETGVNILTAVD 1002

Query: 276  EIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIF 335
            EIQ+++DDH+L+AQTMRGSPY+KPFE EM+AWE KLI+MQDIL+ WL  Q TWMYLEPIF
Sbjct: 1003 EIQLLMDDHLLKAQTMRGSPYVKPFEAEMQAWEQKLISMQDILEAWLMCQSTWMYLEPIF 1062

Query: 336  SSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQ 395
            SSEDIMRQMP E+RNFK VD++W+ I     K P +L AT+ ++ML +    N +L+ IQ
Sbjct: 1063 SSEDIMRQMPTEARNFKQVDKVWRAIQHNTTKHPKVLAATDYKNMLTSLRDNNRLLDDIQ 1122

Query: 396  KGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEI 455
            KGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDP RVQPHLKK FEGIN+L+++D  EI
Sbjct: 1123 KGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPYRVQPHLKKCFEGINMLDFTDEEEI 1182

Query: 456  IGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVVW 515
            +GM+S+E E V  SG I P +AKG+VEKWL QVE +MI+SL+DI   +L A   + R+ W
Sbjct: 1183 VGMLSVEHEIVPFSGKIIPAEAKGMVEKWLVQVESMMIQSLKDIMTESLTAAATANRIDW 1242

Query: 516  VTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKLLMSERITI 575
            +  WPG +V C + I WT +V ++I    L+  +    KQI+  V  ++G+L    ++T+
Sbjct: 1243 IHHWPGQIVQCCNCIQWTTDVTQSIIDNTLNDQIYLCTKQIETSVRMIQGRLHPGTQVTV 1302

Query: 576  CALIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYEYLG 635
             ALIVIDVH +++V  L + KVTQ+ DF W+SQLRYY  + +V V MITT V YG+EYLG
Sbjct: 1303 EALIVIDVHGRDIVKKLHDLKVTQISDFNWISQLRYYWHDAIVTVAMITTEVLYGFEYLG 1362

Query: 636  NSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSD 695
            N+ RLV TPLTDRCYRTLM ALKL+LGGAPEGPAGTGKTET KDLAKAVAK+C+VFNCSD
Sbjct: 1363 NTGRLVATPLTDRCYRTLMGALKLNLGGAPEGPAGTGKTETCKDLAKAVAKKCVVFNCSD 1422

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270011462|gb|EFA07910.1| hypothetical protein TcasGA2_TC005485 [Tribolium castaneum]

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/660 (52%), Positives = 475/660 (71%), Gaps = 1/660 (0%)

Query: 37   HSKMLTAIEKSVTGN-TTEEFKKAHKEVLTLLDLLQKDRTTARQINEEQELLKMVRTNYE 95
            H KML A +K      T EE ++   +V  L+  L +D+  A QINEE++LL    + + 
Sbjct: 776  HEKMLVAFKKKDPPILTMEEMEECVAQVEDLVQKLHEDKQEADQINEEEQLLDFDPSAFL 835

Query: 96   TVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKM 155
             + +ML  +EP+D+LW  +LEF    D W  GPF  L+A+ + +  +  ++ L +LA+  
Sbjct: 836  NLQKMLTVVEPYDKLWHTVLEFHVQYDAWYYGPFADLDAEAVSEAVENTWKVLYKLAKTF 895

Query: 156  TRAPGCKMVNDLTRSKLESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSLK 215
               P  + + ++ R+K+E FR+ +P+LQ + N G+++RHW+ +S+ +G +I    + +L 
Sbjct: 896  HDNPAARRIAEMVRAKVEKFRQFLPVLQTVCNKGLQKRHWEAISELVGTEIVVTPELTLN 955

Query: 216  NMLDLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTD 275
            +M+++G+     +LE++S SA+KE EL ++L KM  EW+DIK +++PYR+TG  I+   D
Sbjct: 956  DMIEVGLPKFAAQLEDISASATKEYELEKNLKKMKEEWADIKFELIPYRETGVNILTAVD 1015

Query: 276  EIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIF 335
            EIQ+++DDH+L+AQTMRGSPY+KPFE EM+AWE KLI+MQDIL+ WL  Q TWMYLEPIF
Sbjct: 1016 EIQLLMDDHLLKAQTMRGSPYVKPFEAEMQAWEQKLISMQDILEAWLMCQSTWMYLEPIF 1075

Query: 336  SSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQ 395
            SSEDIMRQMP E+RNFK VD++W+ I     K P +L AT+ ++ML +    N +L+ IQ
Sbjct: 1076 SSEDIMRQMPTEARNFKQVDKVWRAIQHNTTKHPKVLAATDYKNMLTSLRDNNRLLDDIQ 1135

Query: 396  KGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEI 455
            KGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDP RVQPHLKK FEGIN+L+++D  EI
Sbjct: 1136 KGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPYRVQPHLKKCFEGINMLDFTDEEEI 1195

Query: 456  IGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVVW 515
            +GM+S+E E V  SG I P +AKG+VEKWL QVE +MI+SL+DI   +L A   + R+ W
Sbjct: 1196 VGMLSVEHEIVPFSGKIIPAEAKGMVEKWLVQVESMMIQSLKDIMTESLTAAATANRIDW 1255

Query: 516  VTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKLLMSERITI 575
            +  WPG +V C + I WT +V ++I    L+  +    KQI+  V  ++G+L    ++T+
Sbjct: 1256 IHHWPGQIVQCCNCIQWTTDVTQSIIDNTLNDQIYLCTKQIETSVRMIQGRLHPGTQVTV 1315

Query: 576  CALIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYEYLG 635
             ALIVIDVH +++V  L + KVTQ+ DF W+SQLRYY  + +V V MITT V YG+EYLG
Sbjct: 1316 EALIVIDVHGRDIVKKLHDLKVTQISDFNWISQLRYYWHDAIVTVAMITTEVLYGFEYLG 1375

Query: 636  NSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSD 695
            N+ RLV TPLTDRCYRTLM ALKL+LGGAPEGPAGTGKTET KDLAKAVAK+C+VFNCSD
Sbjct: 1376 NTGRLVATPLTDRCYRTLMGALKLNLGGAPEGPAGTGKTETCKDLAKAVAKKCVVFNCSD 1435

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340373841|ref|XP_003385448.1| PREDICTED: dynein heavy chain 3, axonemal [Amphimedon queenslandica]

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/668 (52%), Positives = 460/668 (68%), Gaps = 1/668 (0%)

Query: 28   EFKKAHKEEHSKMLTAIEKSVTGNTTEEFKKAHKEVLTLLDLLQKDRTTARQINEEQELL 87
            +F++   E H+ +    +K V  N  ++ +   +++  L   L+  +  A  IN E+EL 
Sbjct: 668  KFEEQLTEYHNAIELYKDKEVPRNV-DDIRSVVEQLNELGKKLEASKEEAMSINNEEELF 726

Query: 88   KMVRTNYETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRE 147
            +   T +  +   +   EPFD+LW+  L+F    D W+ GPF  L+A+E++++   M+R 
Sbjct: 727  EWEVTAFPQIQTGITLKEPFDRLWATALDFHIKHDKWLNGPFIELDAEEVEEELGSMWRT 786

Query: 148  LNQLARKMTRAPGCKMVNDLTRSKLESFRKEVPILQCISNPGMEERHWKILSDELGQDIT 207
            +++L+R     P  K   ++T+SKL+ F++ +P+LQ   NPG+ +RHWK +S+ +G D+ 
Sbjct: 787  MHKLSRTFADNPNPKRSAEITKSKLDKFKQHLPLLQTFCNPGIRDRHWKSMSEIVGFDLK 846

Query: 208  PNDQTSLKNMLDLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTG 267
            P   T L  M+  G+   L KLEE+  SASKE  L ++++KM TEW DI  + +PYRDTG
Sbjct: 847  PQPTTPLSIMIGYGLDKHLEKLEEIGASASKEYSLEKAMDKMKTEWKDICFNFLPYRDTG 906

Query: 268  TYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGT 327
              I+   D++Q++LDDHI++AQTMRGSP+IKPFE E++ WE KL+ MQDILD WL+ Q T
Sbjct: 907  ISILSSVDDVQMLLDDHIVKAQTMRGSPFIKPFEAEIKEWEEKLLLMQDILDAWLKCQAT 966

Query: 328  WMYLEPIFSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKC 387
            W+YLEPIFSSEDIM QMPEE R F  VD+ WK IM    KD H L  T  ++ML    + 
Sbjct: 967  WLYLEPIFSSEDIMAQMPEEGRKFSIVDRYWKDIMTGSVKDTHALVVTAQKNMLSRLTES 1026

Query: 388  NLMLELIQKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLL 447
            N +LE IQKGLNDYLEKKRL+FPRFFFLSNDELLEILSETKDPLRVQPHLKK FEGI  L
Sbjct: 1027 NSLLEEIQKGLNDYLEKKRLYFPRFFFLSNDELLEILSETKDPLRVQPHLKKCFEGIAKL 1086

Query: 448  EYSDSLEIIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAY 507
            E++++ E+ GMIS E E V  S  + P +A+G+VEKWL +V+ +MIKSL D+   ++ AY
Sbjct: 1087 EFTETQEVKGMISSEKESVPFSETVIPAEARGMVEKWLLRVQQVMIKSLCDVTADSVKAY 1146

Query: 508  YKSERVVWVTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKL 567
              + R  WV  WPG +VI VS+I WT EV  AI    L   L +   QI+ +V  VRGKL
Sbjct: 1147 PVTSRDQWVLDWPGQIVISVSTIYWTQEVNDAIVNGTLKDYLAQCTGQINRIVEMVRGKL 1206

Query: 568  LMSERITICALIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYYNVNNLVNVCMITTTV 627
                R T+ AL VIDVHA++VVA L E KV+   DF W+SQLRYY  +  V V MITT V
Sbjct: 1207 AKMARTTLGALTVIDVHARDVVAKLYEDKVSSPNDFQWISQLRYYFEDGKVLVKMITTEV 1266

Query: 628  QYGYEYLGNSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQ 687
             YGYEYLGN+ RLVITPLTDRCYRTLM A+KL+LGG+PEGPAGTGKTET KDLAKAVAKQ
Sbjct: 1267 PYGYEYLGNTGRLVITPLTDRCYRTLMGAIKLNLGGSPEGPAGTGKTETCKDLAKAVAKQ 1326

Query: 688  CIVFNCSD 695
            C+VFNCSD
Sbjct: 1327 CVVFNCSD 1334

Source: Amphimedon queenslandica

Species: Amphimedon queenslandica

Genus: Amphimedon

Family: Niphatidae

Order: Haplosclerida

Class: Demospongiae

Phylum: Porifera

Superkingdom: Eukaryota

>gi|260824147|ref|XP_002607029.1| hypothetical protein BRAFLDRAFT_127072 [Branchiostoma floridae] gi|229292375|gb|EEN63039.1| hypothetical protein BRAFLDRAFT_127072 [Branchiostoma floridae]

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/705 (50%), Positives = 465/705 (65%), Gaps = 22/705 (3%)

Query: 7    WKEHSKMLTAIEKSVTGNTTEEFKKAHKEEHSKMLTAIEKSVT--GNTTEEFKKAHKEVL 64
            W EH + +  + K+   N  E    A ++E  K L   E  +       E F+K  KE++
Sbjct: 694  WPEHIQTVFDLSKNRLANRRE----AAEDEVKKKLQQFEDKLNRYNQEVESFRK--KEIM 747

Query: 65   TLLDL-------------LQKDRTTARQINEEQELLKMVRTNYETVDEMLERLEPFDQLW 111
            ++ ++             L+        IN E+ELL+   T +  +  M+   EP+D+LW
Sbjct: 748  SMDEMKTNVDKLNELTQQLEDAMGEQASINTEEELLEWEPTAFPILQMMVTYKEPYDKLW 807

Query: 112  SIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSK 171
               L F    + W+ GPF  LNA+E++++   M+R + +L ++ +   G + + +  +SK
Sbjct: 808  GTALSFHTKHEQWLNGPFGDLNAEELEEEIGNMWRTMYKLTKQFSDVAGPRRIAESVKSK 867

Query: 172  LESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSLKNMLDLGIRNILPKLEE 231
            ++ F++ +PILQ I NPG+ +RHW+ +SD +G D+ P  +TSL  ML+ G+   + KLEE
Sbjct: 868  IDKFKQHMPILQTICNPGIRDRHWEQMSDIVGFDLKPEPETSLFQMLEYGLNKFMDKLEE 927

Query: 232  VSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTM 291
            +  +ASKE  L +++ KM TEW+++  + V YRDTG  I+   DEIQV+LDDH+L+ QTM
Sbjct: 928  IGAAASKEYSLEKAMEKMKTEWAEMLFEFVAYRDTGISILSSVDEIQVLLDDHVLKTQTM 987

Query: 292  RGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEESRNF 351
            RGSP+IKPFE E++ WE KLI +QDILD WL+ Q TW+YLEPIFSS DI  QMPEE R F
Sbjct: 988  RGSPFIKPFEVEIKEWEEKLILVQDILDAWLKCQATWLYLEPIFSSPDINAQMPEEGRKF 1047

Query: 352  KTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRLFFPR 411
              VD  W+ IM    KD H+L AT   +ML    + N++LE IQKGLNDYLEKKRL+FPR
Sbjct: 1048 GIVDSYWRDIMTEAVKDTHVLVATAQPNMLGRLRESNVLLEEIQKGLNDYLEKKRLYFPR 1107

Query: 412  FFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEKVALSGL 471
            FFFLSNDELLEILSETKDP+RVQPHLKK FEGI  LE+++   I GMIS E E V  +  
Sbjct: 1108 FFFLSNDELLEILSETKDPMRVQPHLKKCFEGIAKLEFTEDQVITGMISSEKEIVPFTKK 1167

Query: 472  IRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVVWVTKWPGMVVICVSSIT 531
            I P  AKG+VEKWL QVE+ MI S++ +   +  +Y +  R  WV  WPG  VIC SSI 
Sbjct: 1168 IVPAQAKGMVEKWLLQVEETMISSVRKVIADSYLSYKEVPRKKWVLDWPGQTVICTSSIY 1227

Query: 532  WTAEVEKAIQGR-KLDAMLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVA 590
            WTAEV  AIQ    L   L+ S KQID +V  VRGKL M  R T+ AL+VIDVHA++VV 
Sbjct: 1228 WTAEVTAAIQEEGGLKKYLEISNKQIDEIVALVRGKLEMGARFTLGALVVIDVHARDVVE 1287

Query: 591  SLVESKVTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYEYLGNSDRLVITPLTDRCY 650
             L   K++    F W+SQLRYY       V MITT + YGYEYLGN+ RLVITPLTDRCY
Sbjct: 1288 KLANDKISDTNAFDWISQLRYYFDGKDAQVHMITTELGYGYEYLGNTGRLVITPLTDRCY 1347

Query: 651  RTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSD 695
            RTLM A+KL+LGGAPEGPAGTGKTETSKDLAKA+AKQC+VFNCSD
Sbjct: 1348 RTLMGAMKLNLGGAPEGPAGTGKTETSKDLAKAIAKQCVVFNCSD 1392

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1513
UNIPROTKB|F1MRU4	4079	DNAH3 "Uncharacterized protein	0.436	0.161	0.502	1.3e-312
UNIPROTKB|Q8TD57	4116	DNAH3 "Dynein heavy chain 3, a	0.440	0.161	0.5	1e-311
UNIPROTKB|J9NT00	4071	DNAH3 "Uncharacterized protein	0.436	0.162	0.499	3.2e-311
UNIPROTKB|F1PBB5	4075	DNAH3 "Uncharacterized protein	0.436	0.161	0.499	3.2e-311
UNIPROTKB|J9NWH9	4081	DNAH3 "Uncharacterized protein	0.436	0.161	0.499	3.2e-311
UNIPROTKB|F1NNT1	3863	DNAH3 "Uncharacterized protein	0.448	0.175	0.481	1.3e-310
UNIPROTKB|F1NZ92	4073	DNAH3 "Uncharacterized protein	0.448	0.166	0.480	1.3e-310
ZFIN|ZDB-GENE-091112-7	3868	si:dkey-161j23.4 "si:dkey-161j	0.424	0.165	0.504	2.4e-309
MGI|MGI:2683040	4083	Dnahc3 "dynein, axonemal, heav	0.440	0.163	0.491	1.2e-308
UNIPROTKB|J9P9Z9	4023	DNAH7 "Uncharacterized protein	0.424	0.159	0.478	1.7e-301

UNIPROTKB|F1MRU4 DNAH3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 1664 (590.8 bits), Expect = 1.3e-312, Sum P(3) = 1.3e-312
 Identities = 332/661 (50%), Positives = 434/661 (65%)

Query:    35 EEHSKMLTAIEKSVTGNTTEEFKKAHKEVLTLLDLLQKDRTTARQINEEQELLKMVRTNY 94
             E +SK L    K     TTEE K   +++  L   L +       IN+E+ELL+  ++ +
Sbjct:   759 EGYSKELEGFRKREV-MTTEEMKNNVEKLNELSKNLDQALVEFELINKEEELLEKEKSTF 817

Query:    95 ETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARK 154
               +  ++    P++QLW    EF   S+ WM GP   LNA+EI ++   M+R + +L + 
Sbjct:   818 PLLQIVMTNKVPYEQLWVTAYEFSTKSEEWMNGPLFLLNAEEIAEEIGNMWRTIYKLTKT 877

Query:   155 MTRAPGCKMVNDLTRSKLESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSL 214
             +   P  + + +  + K++ F++ +PIL    NPGM++RHW+ +S+ +G +I P + T L
Sbjct:   878 LADMPAPRRLAENVKIKIDKFKQHIPILTISCNPGMKDRHWQQISEIVGYEIKPTETTCL 937

Query:   215 KNMLDLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGT 274
              NML+ G    + KLE +  +ASKE  L ++L KM  +W ++  + V YRDT T I+   
Sbjct:   938 SNMLEFGFGKFIEKLEPIGAAASKEYSLEKNLEKMKLDWVNMTFNFVKYRDTDTSILCAV 997

Query:   275 DEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPI 334
             D+IQ++LDDH+++ QTM GSP++KP ETE   WE KL+ +Q+ILD WL+ Q TW+YLEPI
Sbjct:   998 DDIQLLLDDHVIKTQTMCGSPFVKPIETECRKWEEKLVRVQEILDAWLKCQATWLYLEPI 1057

Query:   335 FSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELI 394
             FSSEDI+ QMPEE R F  VD  WK++M    KD  +L A +   M +   + NL+LE I
Sbjct:  1058 FSSEDIIAQMPEEGRKFAIVDNYWKSLMSQAVKDTRVLMAADQPRMAERLQEANLLLEDI 1117

Query:   395 QKGLNDYLEXXXXXXXXXXXXSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLE 454
             QKGLNDYLE            SNDELLEILSETKDPLRVQPHLKK FEGI  LE++DSLE
Sbjct:  1118 QKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKCFEGIAKLEFTDSLE 1177

Query:   455 IIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVV 514
             I+GMIS E E +     I P  AKG+VEKWL QVE +M+ S+Q++  + + AY +  R  
Sbjct:  1178 IVGMISSEKEIIPFKQKIYPAQAKGMVEKWLLQVEQMMLASMQEVIKLGIEAYVQVPRNQ 1237

Query:   515 WVTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKLLMSERIT 574
             WV +WPG VVICVSSI WT EV +A+  + L   L KS  QI  +V  VRGKL    R+T
Sbjct:  1238 WVLQWPGQVVICVSSIFWTQEVSQALIEKTLPDFLKKSNDQIAQIVQLVRGKLSSGARLT 1297

Query:   575 ICALIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYYXXXXXXXXCMITTTVQYGYEYL 634
             + AL VIDVHA++VVA L E  V  + DF W+SQLRYY         MITT   YGYEYL
Sbjct:  1298 LGALTVIDVHARDVVAKLSEDNVCDLNDFQWISQLRYYWDSKDVQVQMITTEALYGYEYL 1357

Query:   635 GNSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCS 694
             GNS RLVITPLTDRCYRTLM ALKL+LGGAPEGPAGTGKTET+KDLAKA+AKQC+VFNCS
Sbjct:  1358 GNSPRLVITPLTDRCYRTLMGALKLNLGGAPEGPAGTGKTETTKDLAKALAKQCVVFNCS 1417

Query:   695 D 695
             D
Sbjct:  1418 D 1418

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

UNIPROTKB|Q8TD57 DNAH3 "Dynein heavy chain 3, axonemal" [Homo sapiens (taxid:9606)]

 Score = 1654 (587.3 bits), Expect = 1.0e-311, Sum P(3) = 1.0e-311
 Identities = 334/668 (50%), Positives = 441/668 (66%)

Query:    28 EFKKAHKEEHSKMLTAIEKSVTGNTTEEFKKAHKEVLTLLDLLQKDRTTARQINEEQELL 87
             EF+   +  H ++ +  ++ V   TTEE K   +++  L   L +       IN+E+ELL
Sbjct:   792 EFELRLEGYHRELESFRKREVM--TTEEMKHNVEKLNELSKNLNRAFAEFELINKEEELL 849

Query:    88 KMVRTNYETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRE 147
             +  ++ Y  +  ML+   P++QLWS   EF   S+ WM GP   LNA++I ++   M+R 
Sbjct:   850 EKEKSTYPLLQAMLKNKVPYEQLWSTAYEFSIKSEEWMNGPLFLLNAEQIAEEIGNMWRT 909

Query:   148 LNQLARKMTRAPGCKMVNDLTRSKLESFRKEVPILQCISNPGMEERHWKILSDELGQDIT 207
               +L + ++  P  + + +  + K++ F++ +PIL    NPGM++RHW+ +S+ +G +I 
Sbjct:   910 TYKLIKTLSDVPAPRRLAENVKIKIDKFKQYIPILSISCNPGMKDRHWQQISEIVGYEIK 969

Query:   208 PNDQTSLKNMLDLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTG 267
             P + T L NML+ G    + KLE +  +ASKE  L ++L++M  +W ++    V YRDT 
Sbjct:   970 PTETTCLSNMLEFGFGKFVEKLEPIGAAASKEYSLEKNLDRMKLDWVNVTFSFVKYRDTD 1029

Query:   268 TYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGT 327
             T I+   D+IQ++LDDH+++ QTM GSP+IKP E E   WE KLI +QD LD WL+ Q T
Sbjct:  1030 TNILCAIDDIQMLLDDHVIKTQTMCGSPFIKPIEAECRKWEEKLIRIQDNLDAWLKCQAT 1089

Query:   328 WMYLEPIFSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKC 387
             W+YLEPIFSSEDI+ QMPEE R F  VD  WK++M    KD  IL A +   M +   + 
Sbjct:  1090 WLYLEPIFSSEDIIAQMPEEGRKFGIVDSYWKSLMSQAVKDNRILVAADQPRMAEKLQEA 1149

Query:   388 NLMLELIQKGLNDYLEXXXXXXXXXXXXSNDELLEILSETKDPLRVQPHLKKIFEGINLL 447
             N +LE IQKGLNDYLE            SNDELLEILSETKDPLRVQPHLKK FEGI  L
Sbjct:  1150 NFLLEDIQKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKCFEGIAKL 1209

Query:   448 EYSDSLEIIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAY 507
             E++D+LEI+GMIS E E V     I P +AKG+VEKWLQQVE +M+ S++++  + + AY
Sbjct:  1210 EFTDNLEIVGMISSEKETVPFIQKIYPANAKGMVEKWLQQVEQMMLASMREVIGLGIEAY 1269

Query:   508 YKSERVVWVTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKL 567
              K  R  WV +WPG VVICVSSI WT EV +A+    L   L KS  QI  +V  VRGKL
Sbjct:  1270 VKVPRNHWVLQWPGQVVICVSSIFWTQEVSQALAENTLLDFLKKSNDQIAQIVQLVRGKL 1329

Query:   568 LMSERITICALIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYYXXXXXXXXCMITTTV 627
                 R+T+ AL VIDVHA++VVA L E +V+ + DF W+SQLRYY         +ITT  
Sbjct:  1330 SSGARLTLGALTVIDVHARDVVAKLSEDRVSDLNDFQWISQLRYYWVAKDVQVQIITTEA 1389

Query:   628 QYGYEYLGNSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQ 687
              YGYEYLGNS RLVITPLTDRCYRTLM ALKL+LGGAPEGPAGTGKTET+KDLAKA+AKQ
Sbjct:  1390 LYGYEYLGNSPRLVITPLTDRCYRTLMGALKLNLGGAPEGPAGTGKTETTKDLAKALAKQ 1449

Query:   688 CIVFNCSD 695
             C+VFNCSD
Sbjct:  1450 CVVFNCSD 1457

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=NAS

GO:0005858 "axonemal dynein complex" evidence=NAS

GO:0003777 "microtubule motor activity" evidence=NAS

UNIPROTKB|J9NT00 DNAH3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1659 (589.1 bits), Expect = 3.2e-311, Sum P(3) = 3.2e-311
 Identities = 330/661 (49%), Positives = 434/661 (65%)

Query:    35 EEHSKMLTAIEKSVTGNTTEEFKKAHKEVLTLLDLLQKDRTTARQINEEQELLKMVRTNY 94
             E ++K L    K     TTEE K   +++  L   L +       IN+E+ELL+  ++ +
Sbjct:   754 EGYNKELEGFRKREV-MTTEEMKNNVEKLHELSKNLDQALVEFELINKEEELLEKEKSTF 812

Query:    95 ETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARK 154
               +  ++    P++QLW    EF   S+ WM GP   LNA+EI ++   M+R + +L + 
Sbjct:   813 PLLQALMINKVPYEQLWLTAYEFSIKSEEWMNGPLFLLNAEEIAEEIGNMWRTIYKLTKT 872

Query:   155 MTRAPGCKMVNDLTRSKLESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSL 214
             +   P  + + +  + K++ F++ +PIL    NPGM++RHW+ +S+  G +I P + T L
Sbjct:   873 LADVPAPRRLAENVKVKIDKFKQHIPILSISCNPGMKDRHWQQISEIAGYEIKPTETTCL 932

Query:   215 KNMLDLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGT 274
              NML+ G    + KLE +  +ASKE  L ++L KM ++W ++  + V YRDT T I+   
Sbjct:   933 SNMLEYGFSKFIDKLEPIGAAASKEYSLEKNLEKMKSDWVNMTFNFVKYRDTDTNILCAV 992

Query:   275 DEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPI 334
             D+IQ++LDDH+++ QTM GSP+IKP E E   WE KL+ +Q+ILD WL+ Q TW+YLEPI
Sbjct:   993 DDIQLLLDDHVIKTQTMCGSPFIKPIEAECRKWEEKLVRVQEILDAWLKCQATWLYLEPI 1052

Query:   335 FSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELI 394
             FSSEDI+ QM EE R F TVD  WK++M    KD  +L A +   M +   + NL+LE I
Sbjct:  1053 FSSEDIIAQMAEEGRKFATVDSYWKSLMSQAVKDTRVLVAADQPRMAERLQEANLLLEDI 1112

Query:   395 QKGLNDYLEXXXXXXXXXXXXSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLE 454
             QKGLNDYLE            SNDELLEILSETKDPLRVQPHLKK FEGI  LE++D+LE
Sbjct:  1113 QKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKCFEGIAKLEFTDNLE 1172

Query:   455 IIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVV 514
             I GMIS E E V    +I P  AKG+VEKWLQQVE +M+ S++++  + + AY +  R  
Sbjct:  1173 ITGMISSEKETVPFKQIIYPTQAKGMVEKWLQQVEQMMLASMREVIRLGIEAYVQVPRNQ 1232

Query:   515 WVTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKLLMSERIT 574
             WV +WPG VVICVSSI WT EV +A+  + L   L KS  QI  +V  VRGKL    R+T
Sbjct:  1233 WVLQWPGQVVICVSSIFWTKEVSQALVEKTLPDFLKKSNDQIAQIVQLVRGKLSSGARLT 1292

Query:   575 ICALIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYYXXXXXXXXCMITTTVQYGYEYL 634
             + AL VIDVHA++VVA L E  +  + DF W+SQLRYY         MITT   YGYEYL
Sbjct:  1293 LGALTVIDVHARDVVAKLSEDNICDLNDFQWISQLRYYWNSENVHVQMITTEALYGYEYL 1352

Query:   635 GNSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCS 694
             GNS RLVITPLTDRCYRTLM ALKL+LGGAPEGPAGTGKTET+KDLAKA+AKQC+VFNCS
Sbjct:  1353 GNSPRLVITPLTDRCYRTLMGALKLNLGGAPEGPAGTGKTETTKDLAKALAKQCVVFNCS 1412

Query:   695 D 695
             D
Sbjct:  1413 D 1413

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

UNIPROTKB|F1PBB5 DNAH3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1659 (589.1 bits), Expect = 3.2e-311, Sum P(3) = 3.2e-311
 Identities = 330/661 (49%), Positives = 434/661 (65%)

Query:    35 EEHSKMLTAIEKSVTGNTTEEFKKAHKEVLTLLDLLQKDRTTARQINEEQELLKMVRTNY 94
             E ++K L    K     TTEE K   +++  L   L +       IN+E+ELL+  ++ +
Sbjct:   758 EGYNKELEGFRKREV-MTTEEMKNNVEKLHELSKNLDQALVEFELINKEEELLEKEKSTF 816

Query:    95 ETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARK 154
               +  ++    P++QLW    EF   S+ WM GP   LNA+EI ++   M+R + +L + 
Sbjct:   817 PLLQALMINKVPYEQLWLTAYEFSIKSEEWMNGPLFLLNAEEIAEEIGNMWRTIYKLTKT 876

Query:   155 MTRAPGCKMVNDLTRSKLESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSL 214
             +   P  + + +  + K++ F++ +PIL    NPGM++RHW+ +S+  G +I P + T L
Sbjct:   877 LADVPAPRRLAENVKVKIDKFKQHIPILSISCNPGMKDRHWQQISEIAGYEIKPTETTCL 936

Query:   215 KNMLDLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGT 274
              NML+ G    + KLE +  +ASKE  L ++L KM ++W ++  + V YRDT T I+   
Sbjct:   937 SNMLEYGFSKFIDKLEPIGAAASKEYSLEKNLEKMKSDWVNMTFNFVKYRDTDTNILCAV 996

Query:   275 DEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPI 334
             D+IQ++LDDH+++ QTM GSP+IKP E E   WE KL+ +Q+ILD WL+ Q TW+YLEPI
Sbjct:   997 DDIQLLLDDHVIKTQTMCGSPFIKPIEAECRKWEEKLVRVQEILDAWLKCQATWLYLEPI 1056

Query:   335 FSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELI 394
             FSSEDI+ QM EE R F TVD  WK++M    KD  +L A +   M +   + NL+LE I
Sbjct:  1057 FSSEDIIAQMAEEGRKFATVDSYWKSLMSQAVKDTRVLVAADQPRMAERLQEANLLLEDI 1116

Query:   395 QKGLNDYLEXXXXXXXXXXXXSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLE 454
             QKGLNDYLE            SNDELLEILSETKDPLRVQPHLKK FEGI  LE++D+LE
Sbjct:  1117 QKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKCFEGIAKLEFTDNLE 1176

Query:   455 IIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVV 514
             I GMIS E E V    +I P  AKG+VEKWLQQVE +M+ S++++  + + AY +  R  
Sbjct:  1177 ITGMISSEKETVPFKQIIYPTQAKGMVEKWLQQVEQMMLASMREVIRLGIEAYVQVPRNQ 1236

Query:   515 WVTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKLLMSERIT 574
             WV +WPG VVICVSSI WT EV +A+  + L   L KS  QI  +V  VRGKL    R+T
Sbjct:  1237 WVLQWPGQVVICVSSIFWTKEVSQALVEKTLPDFLKKSNDQIAQIVQLVRGKLSSGARLT 1296

Query:   575 ICALIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYYXXXXXXXXCMITTTVQYGYEYL 634
             + AL VIDVHA++VVA L E  +  + DF W+SQLRYY         MITT   YGYEYL
Sbjct:  1297 LGALTVIDVHARDVVAKLSEDNICDLNDFQWISQLRYYWNSENVHVQMITTEALYGYEYL 1356

Query:   635 GNSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCS 694
             GNS RLVITPLTDRCYRTLM ALKL+LGGAPEGPAGTGKTET+KDLAKA+AKQC+VFNCS
Sbjct:  1357 GNSPRLVITPLTDRCYRTLMGALKLNLGGAPEGPAGTGKTETTKDLAKALAKQCVVFNCS 1416

Query:   695 D 695
             D
Sbjct:  1417 D 1417

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

UNIPROTKB|J9NWH9 DNAH3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1659 (589.1 bits), Expect = 3.2e-311, Sum P(3) = 3.2e-311
 Identities = 330/661 (49%), Positives = 434/661 (65%)

Query:    35 EEHSKMLTAIEKSVTGNTTEEFKKAHKEVLTLLDLLQKDRTTARQINEEQELLKMVRTNY 94
             E ++K L    K     TTEE K   +++  L   L +       IN+E+ELL+  ++ +
Sbjct:   764 EGYNKELEGFRKREV-MTTEEMKNNVEKLHELSKNLDQALVEFELINKEEELLEKEKSTF 822

Query:    95 ETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARK 154
               +  ++    P++QLW    EF   S+ WM GP   LNA+EI ++   M+R + +L + 
Sbjct:   823 PLLQALMINKVPYEQLWLTAYEFSIKSEEWMNGPLFLLNAEEIAEEIGNMWRTIYKLTKT 882

Query:   155 MTRAPGCKMVNDLTRSKLESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSL 214
             +   P  + + +  + K++ F++ +PIL    NPGM++RHW+ +S+  G +I P + T L
Sbjct:   883 LADVPAPRRLAENVKVKIDKFKQHIPILSISCNPGMKDRHWQQISEIAGYEIKPTETTCL 942

Query:   215 KNMLDLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGT 274
              NML+ G    + KLE +  +ASKE  L ++L KM ++W ++  + V YRDT T I+   
Sbjct:   943 SNMLEYGFSKFIDKLEPIGAAASKEYSLEKNLEKMKSDWVNMTFNFVKYRDTDTNILCAV 1002

Query:   275 DEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPI 334
             D+IQ++LDDH+++ QTM GSP+IKP E E   WE KL+ +Q+ILD WL+ Q TW+YLEPI
Sbjct:  1003 DDIQLLLDDHVIKTQTMCGSPFIKPIEAECRKWEEKLVRVQEILDAWLKCQATWLYLEPI 1062

Query:   335 FSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELI 394
             FSSEDI+ QM EE R F TVD  WK++M    KD  +L A +   M +   + NL+LE I
Sbjct:  1063 FSSEDIIAQMAEEGRKFATVDSYWKSLMSQAVKDTRVLVAADQPRMAERLQEANLLLEDI 1122

Query:   395 QKGLNDYLEXXXXXXXXXXXXSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLE 454
             QKGLNDYLE            SNDELLEILSETKDPLRVQPHLKK FEGI  LE++D+LE
Sbjct:  1123 QKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKCFEGIAKLEFTDNLE 1182

Query:   455 IIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVV 514
             I GMIS E E V    +I P  AKG+VEKWLQQVE +M+ S++++  + + AY +  R  
Sbjct:  1183 ITGMISSEKETVPFKQIIYPTQAKGMVEKWLQQVEQMMLASMREVIRLGIEAYVQVPRNQ 1242

Query:   515 WVTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKLLMSERIT 574
             WV +WPG VVICVSSI WT EV +A+  + L   L KS  QI  +V  VRGKL    R+T
Sbjct:  1243 WVLQWPGQVVICVSSIFWTKEVSQALVEKTLPDFLKKSNDQIAQIVQLVRGKLSSGARLT 1302

Query:   575 ICALIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYYXXXXXXXXCMITTTVQYGYEYL 634
             + AL VIDVHA++VVA L E  +  + DF W+SQLRYY         MITT   YGYEYL
Sbjct:  1303 LGALTVIDVHARDVVAKLSEDNICDLNDFQWISQLRYYWNSENVHVQMITTEALYGYEYL 1362

Query:   635 GNSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCS 694
             GNS RLVITPLTDRCYRTLM ALKL+LGGAPEGPAGTGKTET+KDLAKA+AKQC+VFNCS
Sbjct:  1363 GNSPRLVITPLTDRCYRTLMGALKLNLGGAPEGPAGTGKTETTKDLAKALAKQCVVFNCS 1422

Query:   695 D 695
             D
Sbjct:  1423 D 1423

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

UNIPROTKB|F1NNT1 DNAH3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1644 (583.8 bits), Expect = 1.3e-310, Sum P(3) = 1.3e-310
 Identities = 331/688 (48%), Positives = 449/688 (65%)

Query:     8 KEHSKMLTAIEKSVTGNTTEEFKKAHKEEHSKMLTAIEKSVTGNTTEEFKKAHKEVLTLL 67
             +EH++++     S      E + +  +    + +  +E+    N TE+ K+ +K +   L
Sbjct:   524 REHAELVLLERCSQFDEALEGYNREVESYKKREVMTVEEMK--NNTEKLKELNKNLDEAL 581

Query:    68 DLLQKDRTTARQINEEQELLKMVRTNYETVDEMLERLEPFDQLWSIILEFRESSDLWMEG 127
               L+        IN+E+ELL+  ++ +  +  ++ + +P +QLW    +F   S+ WM G
Sbjct:   582 AELEA-------INKEEELLEREKSYFPLLQIIITKKQPIEQLWITAYDFHTKSEEWMHG 634

Query:   128 PFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSKLESFRKEVPILQCISN 187
               + LNADEI ++   M+R + +L++      G + + + T+ KL+ F++ +P+L    N
Sbjct:   635 FLQKLNADEITEEIGEMWRTMYKLSKSFPDLAGPRRLAESTKYKLDKFKQHLPVLSLACN 694

Query:   188 PGMEERHWKILSDELGQDITPNDQTSLKNMLDLGIRNILPKLEEVSLSASKEAELSQSLN 247
              GM+ERHW+ +S+ +G ++  N+ T+L NML+LG+   + +LE +  +ASKE  L +S+ 
Sbjct:   695 RGMKERHWEQISEVVGCEVRLNETTTLLNMLELGLSKYIDQLEPIGAAASKEYSLEKSIE 754

Query:   248 KMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAW 307
             KM  EW  ++  +V YRDT   I+   D+IQ++LDDHI++ QTM GSP+IKP E E  AW
Sbjct:   755 KMKLEWVSVQFSLVKYRDTNNSILSAVDDIQLLLDDHIVKTQTMCGSPFIKPLEAECRAW 814

Query:   308 ESKLINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNK 367
             E+KL  MQ I+D WL+ Q TW+YLEPIFSSEDI+ QMPEE R F  VD  WK IM  V K
Sbjct:   815 EAKLTLMQSIIDSWLKCQATWLYLEPIFSSEDIIAQMPEEGRKFGIVDAYWKDIMAHVVK 874

Query:   368 DPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEXXXXXXXXXXXXSNDELLEILSET 427
             D  +L AT+   ML    + N +LE IQKGLN YLE            SNDELLEILSET
Sbjct:   875 DSRVLVATDQPKMLDRLQEANALLEDIQKGLNIYLEKKRLFFPRFFFLSNDELLEILSET 934

Query:   428 KDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQ 487
             KDPLRVQPHLKK FEGI  LE++++LEI+GMIS E E V     I P +AKG+VEKWL Q
Sbjct:   935 KDPLRVQPHLKKCFEGIAQLEFTENLEILGMISSEKEIVPFIEKIYPTNAKGMVEKWLLQ 994

Query:   488 VEDLMIKSLQDICMMALGAYYKSERVVWVTKWPGMVVICVSSITWTAEVEKAIQGRKLDA 547
             VE++M+ S++ +    +  Y K  R  WV +WPG VV+CVSSI WT  V +AI+   L  
Sbjct:   995 VEEMMLASVRQVLQDGIEGYVKVPRKAWVLQWPGQVVVCVSSIYWTEAVSEAIRKGTLQD 1054

Query:   548 MLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVASLVESKVTQVEDFAWMS 607
              L++S +QI  +V  VRGKL    R+T+ AL VIDVHA++VV  LVE K+T + DF W+S
Sbjct:  1055 FLEESNQQIGDIVDLVRGKLSSGARLTLGALTVIDVHARDVVEKLVEDKITDLNDFQWIS 1114

Query:   608 QLRYYXXXXXXXXCMITTTVQYGYEYLGNSDRLVITPLTDRCYRTLMSALKLHLGGAPEG 667
             QLRYY         MITT  +YGYEYLGN  RLVITPLTDRCYRTLM ALKL+LGGAPEG
Sbjct:  1115 QLRYYWEGEDVMVRMITTEAKYGYEYLGNCSRLVITPLTDRCYRTLMGALKLNLGGAPEG 1174

Query:   668 PAGTGKTETSKDLAKAVAKQCIVFNCSD 695
             PAGTGKTET+KDLAKA+AKQC+VFNCSD
Sbjct:  1175 PAGTGKTETTKDLAKALAKQCVVFNCSD 1202

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1NZ92 DNAH3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1635 (580.6 bits), Expect = 1.3e-310, Sum P(4) = 1.3e-310
 Identities = 331/689 (48%), Positives = 449/689 (65%)

Query:     8 KEHSKMLTAIEKSVTGNTTEEFKKAHKEEHSKMLTAIEKSVTGNTTEEFKKAHKEVLTLL 67
             +EH++++     S      E + +  +    + +  +E+    N TE+ K+ +K +   L
Sbjct:   737 REHAELVLLERCSQFDEALEGYNREVESYKKREVMTVEEMK--NNTEKLKELNKNLDEAL 794

Query:    68 DLLQKDRTTARQINEEQELLKMVRTNYETVDEMLERLEPFDQLWSIILEFRESSDLWMEG 127
               L+        IN+E+ELL+  ++ +  +  ++ + +P +QLW    +F   S+ WM G
Sbjct:   795 AELEA-------INKEEELLEREKSYFPLLQIIITKKQPIEQLWITAYDFHTKSEEWMHG 847

Query:   128 PFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSKLESFRKEVPILQCISN 187
               + LNADEI ++   M+R + +L++      G + + + T+ KL+ F++ +P+L    N
Sbjct:   848 FLQKLNADEITEEIGEMWRTMYKLSKSFPDLAGPRRLAESTKYKLDKFKQHLPVLSLACN 907

Query:   188 PGMEERHWKILSDELGQDITPNDQTSLKNMLDLGIRNILPKLEEVSLSASKEAELSQSLN 247
              GM+ERHW+ +S+ +G ++  N+ T+L NML+LG+   + +LE +  +ASKE  L +S+ 
Sbjct:   908 RGMKERHWEQISEVVGCEVRLNETTTLLNMLELGLSKYIDQLEPIGAAASKEYSLEKSIE 967

Query:   248 KMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAW 307
             KM  EW  ++  +V YRDT   I+   D+IQ++LDDHI++ QTM GSP+IKP E E  AW
Sbjct:   968 KMKLEWVSVQFSLVKYRDTNNSILSAVDDIQLLLDDHIVKTQTMCGSPFIKPLEAECRAW 1027

Query:   308 ESKLINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNK 367
             E+KL  MQ I+D WL+ Q TW+YLEPIFSSEDI+ QMPEE R F  VD  WK IM  V K
Sbjct:  1028 EAKLTLMQSIIDSWLKCQATWLYLEPIFSSEDIIAQMPEEGRKFGIVDAYWKDIMAHVVK 1087

Query:   368 DPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEXXXXXXXXXXXXSNDELLEILSET 427
             D  +L AT+   ML    + N +LE IQKGLN YLE            SNDELLEILSET
Sbjct:  1088 DSRVLVATDQPKMLDRLQEANALLEDIQKGLNIYLEKKRLFFPRFFFLSNDELLEILSET 1147

Query:   428 KDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEKVALSGLIRPNDAK-GLVEKWLQ 486
             KDPLRVQPHLKK FEGI  LE++++LEI+GMIS E E V     I P +AK G+VEKWL 
Sbjct:  1148 KDPLRVQPHLKKCFEGIAQLEFTENLEILGMISSEKEIVPFIEKIYPTNAKKGMVEKWLL 1207

Query:   487 QVEDLMIKSLQDICMMALGAYYKSERVVWVTKWPGMVVICVSSITWTAEVEKAIQGRKLD 546
             QVE++M+ S++ +    +  Y K  R  WV +WPG VV+CVSSI WT  V +AI+   L 
Sbjct:  1208 QVEEMMLASVRQVLQDGIEGYVKVPRKAWVLQWPGQVVVCVSSIYWTEAVSEAIRKGTLQ 1267

Query:   547 AMLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVASLVESKVTQVEDFAWM 606
               L++S +QI  +V  VRGKL    R+T+ AL VIDVHA++VV  LVE K+T + DF W+
Sbjct:  1268 DFLEESNQQIGDIVDLVRGKLSSGARLTLGALTVIDVHARDVVEKLVEDKITDLNDFQWI 1327

Query:   607 SQLRYYXXXXXXXXCMITTTVQYGYEYLGNSDRLVITPLTDRCYRTLMSALKLHLGGAPE 666
             SQLRYY         MITT  +YGYEYLGN  RLVITPLTDRCYRTLM ALKL+LGGAPE
Sbjct:  1328 SQLRYYWEGEDVMVRMITTEAKYGYEYLGNCSRLVITPLTDRCYRTLMGALKLNLGGAPE 1387

Query:   667 GPAGTGKTETSKDLAKAVAKQCIVFNCSD 695
             GPAGTGKTET+KDLAKA+AKQC+VFNCSD
Sbjct:  1388 GPAGTGKTETTKDLAKALAKQCVVFNCSD 1416

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-091112-7 si:dkey-161j23.4 "si:dkey-161j23.4" [Danio rerio (taxid:7955)]

 Score = 1640 (582.4 bits), Expect = 2.4e-309, Sum P(3) = 2.4e-309
 Identities = 326/646 (50%), Positives = 429/646 (66%)

Query:    52 TTEEFKKAHKEVLTLLDLLQKDRTTARQINEEQELLKMVRTNYETVDEMLERLEPFDQLW 111
             T EE K   +++  +   L+         N+E+ LL   ++ +  +  ++ + +P+DQLW
Sbjct:   577 TLEEIKHNVEKLNNIGISLEAALKEIETSNKEESLLDKEQSQFPVLQTIIAKKQPYDQLW 636

Query:   112 SIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTR--APGCKMVNDLTR 169
                L+F+  S++WM GPF+ LNA+ + +    M+R + +LA+      APG   V +  +
Sbjct:   637 ITALDFQTKSEMWMNGPFQQLNAETVSEDLGNMWRTMYKLAKSFPERTAPG--RVTENFK 694

Query:   170 SKLESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSLKNMLDLGIRNILPKL 229
              K++ F++ +PIL  I NPG+++RHW+++S+ +G D+ P++ T L  M++LG+     +L
Sbjct:   695 KKIDKFKQHLPILTTICNPGLKDRHWEMISNTVGFDVKPDENTPLIKMVELGLSKYSDQL 754

Query:   230 EEVSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQ 289
             EE+  SASKE  L +SL KM  EW+++     PY+DTGT ++   D+IQ++LDDHI++ Q
Sbjct:   755 EEIGASASKEYSLEKSLEKMTREWAELHFMFAPYKDTGTSVLSAVDDIQLLLDDHIIKTQ 814

Query:   290 TMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEESR 349
             TMRGSP+IKP E E +AWE KL  MQDILD  LQ Q  WMYLEPIFSSEDI+ QMPE  R
Sbjct:   815 TMRGSPFIKPIEAEAKAWEEKLQRMQDILDGMLQCQSMWMYLEPIFSSEDIIAQMPENGR 874

Query:   350 NFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEXXXXXX 409
              F  VD  WK I+    KD H+L ATE  +ML    + N  LE IQ+GLN YLE      
Sbjct:   875 KFAIVDSYWKNIVAESLKDTHVLVATEQPNMLGRLQESNTFLEEIQQGLNSYLETKRLFF 934

Query:   410 XXXXXXSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEKVALS 469
                   SNDE+LEILSETKDPLRVQPHLKK FEGI  LE++  LEI GMIS E E V L 
Sbjct:   935 PRFFFLSNDEMLEILSETKDPLRVQPHLKKCFEGIAKLEFTPDLEITGMISSEKEIVPLI 994

Query:   470 GLIRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVVWVTKWPGMVVICVSS 529
               I P  AKG+VEKWL QVE+ M+ S++ +    +  Y +  R  WV  WPG VVIC S 
Sbjct:   995 ETIYPVKAKGMVEKWLLQVENTMLMSIRAVIKQGMEQYSEMPRKKWVLLWPGQVVICASC 1054

Query:   530 ITWTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVV 589
             I WT+EV  AIQ   L + +++S  QI  +V  VRGKL    R+T+ ALIVIDVHA++VV
Sbjct:  1055 IFWTSEVSDAIQNNTLPSYVEQSNAQITDIVELVRGKLSGGARMTLGALIVIDVHARDVV 1114

Query:   590 ASLVESKVTQVEDFAWMSQLRYYXXXXXXXXCMITTTVQYGYEYLGNSDRLVITPLTDRC 649
               L +  V+ + DF W+SQLRY+         MITT ++YGYEYLGNS RLVITPLTDRC
Sbjct:  1115 CKLAQDGVSSLNDFQWISQLRYFWEDGEVMLRMITTAIRYGYEYLGNSPRLVITPLTDRC 1174

Query:   650 YRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSD 695
             YRTLM ALKL+LGGAPEGPAGTGKTET+KDLAKA+AKQC+VFNCSD
Sbjct:  1175 YRTLMGALKLNLGGAPEGPAGTGKTETTKDLAKALAKQCVVFNCSD 1220

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:2683040 Dnahc3 "dynein, axonemal, heavy chain 3" [Mus musculus (taxid:10090)]

 Score = 1610 (571.8 bits), Expect = 1.2e-308, Sum P(3) = 1.2e-308
 Identities = 328/668 (49%), Positives = 430/668 (64%)

Query:    28 EFKKAHKEEHSKMLTAIEKSVTGNTTEEFKKAHKEVLTLLDLLQKDRTTARQINEEQELL 87
             EF+ +  E +SK L    K     TTEE K   +++  L   L    T    IN+E+ELL
Sbjct:   759 EFE-SRLEGYSKELEMFRKREV-MTTEEMKNNVEKLHDLSKNLDLALTEFELINKEEELL 816

Query:    88 KMVRTNYETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRE 147
             +  ++++  +  ++    P++QLW    EF   S+ WM GP   +NA++I ++   M+R 
Sbjct:   817 EKEKSSFPLLQTLMINKIPYEQLWVTAYEFSTKSEEWMNGPLYLMNAEQIAEEIGNMWRT 876

Query:   148 LNQLARKMTRAPGCKMVNDLTRSKLESFRKEVPILQCISNPGMEERHWKILSDELGQDIT 207
               +L + +   P  K + +  + K+E F++ +PIL    NPGM++RHW+ +SD +G +I 
Sbjct:   877 TYKLTKTLIDVPAPKRLAENVKLKIEKFKQHIPILNIACNPGMKDRHWQQISDIVGYEIK 936

Query:   208 PNDQTSLKNMLDLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTG 267
             P + T L NML+ G    + KLE +  +ASKE  L ++L KM  +W ++    V YRDT 
Sbjct:   937 PTETTCLANMLEYGFGKFVDKLEPIGAAASKEYSLEKNLEKMKADWVNMCFSFVKYRDTD 996

Query:   268 TYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGT 327
             T I+   D+IQ++LDDH+++ QTM GS +IKP E E   WE KL+ +Q+ LD WL+ Q T
Sbjct:   997 TSILCAVDDIQLILDDHVIKTQTMCGSVFIKPIEAECRKWEEKLVRVQENLDAWLKCQVT 1056

Query:   328 WMYLEPIFSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKC 387
             W+YLEPIFSSEDI+ QMPEE + F TVD  WK++M     D  ++ A +   M +   + 
Sbjct:  1057 WLYLEPIFSSEDIIAQMPEEGKKFTTVDTYWKSLMAQAVNDTRVMVAADQPRMTEKLQEA 1116

Query:   388 NLMLELIQKGLNDYLEXXXXXXXXXXXXSNDELLEILSETKDPLRVQPHLKKIFEGINLL 447
             N++LE IQ+GLNDYLE            SNDELLEILSETKDPLRVQPHLKK FEGI  L
Sbjct:  1117 NVLLEDIQRGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKCFEGIAKL 1176

Query:   448 EYSDSLEIIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAY 507
             E++D+LEI GMIS E E V     I P  AKG+VEKWLQQVE +M+ S++ +    + AY
Sbjct:  1177 EFTDNLEIKGMISSEKETVPFIQTIYPVKAKGMVEKWLQQVEQVMLASMRQVIENGIEAY 1236

Query:   508 YKSERVVWVTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKL 567
              +  R  WV +WPG VVICVSSI WT EV +A+    L   L KS  QI  +V  VRGKL
Sbjct:  1237 VQVPRNAWVLEWPGQVVICVSSIFWTREVSEALVEDTLTDFLKKSNDQIAQIVELVRGKL 1296

Query:   568 LMSERITICALIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYYXXXXXXXXCMITTTV 627
                 R+T+ AL VIDVHA++VVA L    +  + DF W+SQLRYY         MITT  
Sbjct:  1297 SSGARLTLGALTVIDVHARDVVAKLRHDHINSLNDFQWISQLRYYWTEKNVHVQMITTEA 1356

Query:   628 QYGYEYLGNSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQ 687
              YGYEYLGNS RLVITPLTDRCYRTLM ALKL+LGGAPEGPAGTGKTET+KDLAKA+AKQ
Sbjct:  1357 LYGYEYLGNSPRLVITPLTDRCYRTLMGALKLNLGGAPEGPAGTGKTETTKDLAKALAKQ 1416

Query:   688 CIVFNCSD 695
             C+VFNCSD
Sbjct:  1417 CVVFNCSD 1424

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0003774 "motor activity" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

UNIPROTKB|J9P9Z9 DNAH7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1572 (558.4 bits), Expect = 1.7e-301, Sum P(4) = 1.7e-301
 Identities = 308/644 (47%), Positives = 426/644 (66%)

Query:    54 EEFKKAHKEVLTLLDLLQKDRTTARQINEEQELLKMVRTNYETVDEMLERLEPFDQLWSI 113
             ++ ++  K+  TL   L        Q N E+E    + + Y    ++ + L P+ +L+  
Sbjct:   712 QDVQRYLKKAQTLNAKLDLAADKIEQFNAEEEAFGWLPSIYPQRKKIQDSLNPYLRLYET 771

Query:   114 ILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSKLE 173
              +EF      W EGP+  +N D+++      +R L +L +    +P    +    R+K+E
Sbjct:   772 AVEFSNKYRAWTEGPYHKVNPDQVETDVGNYWRGLYKLEKTFHDSPNALAMTKKVRAKVE 831

Query:   174 SFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSLKNMLDLGIRNILPKLEEVS 233
              F++ +P++Q I NPG+  RHW+ +S  +G  + P D +++ + LD+ +   L + E +S
Sbjct:   832 DFKQHIPLIQVICNPGLRPRHWEAMSSIVGYPLQPTDDSTVFSFLDMDLEPYLYRFEGIS 891

Query:   234 LSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRG 293
              +ASKE  L ++++KM  EW  ++  ++PYR++GT+I+   DEIQ++LDDHI++ QTMRG
Sbjct:   892 EAASKEHSLEKAMDKMTNEWDAMEFVILPYRESGTFILSSVDEIQMLLDDHIIKTQTMRG 951

Query:   294 SPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEESRNFKT 353
             SP+IKP+E ++  WESKL+ +Q+ILD WL+VQ TW+YLEPIFSS DIM QMPEE R F  
Sbjct:   952 SPFIKPYEKQIREWESKLLLLQEILDEWLKVQATWLYLEPIFSSPDIMSQMPEEGRRFTA 1011

Query:   354 VDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEXXXXXXXXXX 413
             VD+ W+ IM  V +D H+LQ   +E ML+   K N +LELI KGLN+YLE          
Sbjct:  1012 VDKTWRDIMKSVVQDKHVLQVVTIERMLERLKKSNELLELILKGLNEYLEKKRLFFPRFF 1071

Query:   414 XXSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEKVALSGLIR 473
               SNDELLEILSETKDP RVQPHLKK FEGI  +E++++L+I  M S EGE V L+  I 
Sbjct:  1072 FLSNDELLEILSETKDPTRVQPHLKKCFEGIARVEFTETLDITHMKSSEGEVVELTETIS 1131

Query:   474 PNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERVVWVTKWPGMVVICVSSITWT 533
                A+G VEKWL ++E +MIKS+  +   A+ AY ++ R+ WV  WPG  V+CVS   WT
Sbjct:  1132 TAKARGQVEKWLVELERVMIKSIHKVIKDAIFAYTQNLRINWVRDWPGQTVLCVSQTFWT 1191

Query:   534 AEVEKAI-QGRK-LDAMLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVAS 591
              EV+ AI +G++ L+  L+K   QID +V  VRGKL    R+T+ AL+V+DVHA++V+  
Sbjct:  1192 LEVQTAILKGQEALEQYLEKCNMQIDDIVTLVRGKLSKQNRVTLGALVVLDVHARDVLTL 1251

Query:   592 LVESKVTQVEDFAWMSQLRYYXXXXXXXXCMITTTVQYGYEYLGNSDRLVITPLTDRCYR 651
             LV+ KV+   DF W+SQLRYY         MI   ++YGYEYLGNS RLVITPLTDRCYR
Sbjct:  1252 LVKKKVSDDSDFEWLSQLRYYWQENHLETKMINAGLRYGYEYLGNSPRLVITPLTDRCYR 1311

Query:   652 TLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSD 695
             TL  AL LHLGGAPEGPAGTGKTET+KDLAKAVAKQC+VFNCSD
Sbjct:  1312 TLFGALHLHLGGAPEGPAGTGKTETTKDLAKAVAKQCVVFNCSD 1355

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8TD57	DYH3_HUMAN	No assigned EC number	0.5357	0.4243	0.1559	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	1513
pfam08393	408	pfam08393, DHC_N2, Dynein heavy chain, N-terminal	1e-150
pfam12774	231	pfam12774, AAA_6, Hydrolytic ATP binding site of d	1e-56
pfam12775	272	pfam12775, AAA_7, P-loop containing dynein motor r	2e-29
pfam12774	231	pfam12774, AAA_6, Hydrolytic ATP binding site of d	8e-25
COG5245	3164	COG5245, DYN1, Dynein, heavy chain [Cytoskeleton]	1e-11
COG5245	3164	COG5245, DYN1, Dynein, heavy chain [Cytoskeleton]	1e-11
pfam12775	272	pfam12775, AAA_7, P-loop containing dynein motor r	1e-09
COG5245	3164	COG5245, DYN1, Dynein, heavy chain [Cytoskeleton]	2e-09
COG5245	3164	COG5245, DYN1, Dynein, heavy chain [Cytoskeleton]	4e-09
pfam07728	135	pfam07728, AAA_5, AAA domain (dynein-related subfa	2e-06
cd00009	151	cd00009, AAA, The AAA+ (ATPases Associated with a	0.002
pfam07728	135	pfam07728, AAA_5, AAA domain (dynein-related subfa	0.003

>gnl|CDD|219818 pfam08393, DHC_N2, Dynein heavy chain, N-terminal region 2

 Score =  463 bits (1194), Expect = e-150
 Identities = 172/412 (41%), Positives = 276/412 (66%), Gaps = 8/412 (1%)

Query: 97  VDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMT 156
           + E+ + L+P  +LW +  E+ ES + W   P+  ++ +E++ + +   ++L +L + + 
Sbjct: 3   LQELEKELKPLKKLWDLYSEWSESIEEWKNTPWSTIDPEELESEIEKFLKQLRKLPKNL- 61

Query: 157 RAPGCKMVNDLTRSKLESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSLKN 216
                ++  +L + K++ F+K +P+++ + NP ++ERHW+ +   LG    P++  +L +
Sbjct: 62  --RQYEVAEEL-KKKIDDFKKSLPLIEDLKNPALKERHWEQIFKLLGFKDFPDEDFTLGD 118

Query: 217 MLDLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDE 276
           +LDLG+ N   ++EE+S  A KE  + ++L K+   W +++ ++VPY+DTGTY+++G DE
Sbjct: 119 LLDLGLLNYEEEIEEISEQAQKEYSIEKALKKIKDTWEELEFELVPYKDTGTYLLKGWDE 178

Query: 277 IQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIFS 336
           I  +LDD+++  Q+M+ SPY+KPFE E + WE KL  +Q++L++WL+VQ  W+YLEPIFS
Sbjct: 179 IIELLDDNLVTLQSMKASPYVKPFEEEADEWEKKLNLIQEVLELWLKVQRKWVYLEPIFS 238

Query: 337 SEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQK 396
           S DI +Q+PEES+ F  VD+ WK +M   NKDP++L+   +  +L+   K N  LE IQK
Sbjct: 239 SSDIKKQLPEESKRFSNVDKEWKKLMKKANKDPNVLEVCNIPGLLEKLEKLNEQLEKIQK 298

Query: 397 GLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSD-SLEI 455
            LN+YLE KR  FPRF+FLSND+LLEILS++KDP  VQPHLKK+FEGI+ LE+ + +  I
Sbjct: 299 SLNEYLESKRSAFPRFYFLSNDDLLEILSQSKDPTAVQPHLKKLFEGISSLEFDEENNNI 358

Query: 456 IGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAY 507
            GMIS EGE+V    L +P   +G VE WL ++E  M ++L+ +   AL  Y
Sbjct: 359 TGMISSEGEEVP---LSKPVSVEGNVEDWLNELEKEMKETLKKLLKEALQDY 407

Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. This region is found C-terminal to the dynein heavy chain N-terminal region 1 (pfam08385) in many members of this family. No functions seem to have been attributed specifically to this region. Length = 408

>gnl|CDD|193250 pfam12774, AAA_6, Hydrolytic ATP binding site of dynein motor region D1

 Score =  195 bits (498), Expect = 1e-56
 Identities = 90/143 (62%), Positives = 106/143 (74%)

Query: 1123 GAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPG 1182
            GAW CFDEFNRI +EVLSVVA QV+ +Q A   K + F F G EISL P+  IFITMNPG
Sbjct: 85   GAWGCFDEFNRISVEVLSVVAVQVKCVQDAIRDKKQWFNFLGEEISLIPSVGIFITMNPG 144

Query: 1183 YAGRTELPDNLKVLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLS 1242
            YAGRTELP+NLK LFR  AM+VPD+ +I EI L + GF  A++LA K +  Y LC E LS
Sbjct: 145  YAGRTELPENLKALFRPCAMVVPDFELICEIMLVAEGFLEARLLARKFITLYTLCKELLS 204

Query: 1243 SQSHYDYGMRAVKSVLNAAGSLK 1265
             Q HYD+G+RA+KSVL  AGSLK
Sbjct: 205  KQDHYDWGLRAIKSVLVVAGSLK 227

the 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This particular family is the D1 unit of the motor and contains the hydrolytic ATP binding site. Length = 231

>gnl|CDD|193251 pfam12775, AAA_7, P-loop containing dynein motor region D3

 Score =  118 bits (298), Expect = 2e-29
 Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 3/167 (1%)

Query: 891  LDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMN--TIT 948
            +DD+NMP+ + YG      L+RQ +D+ H YD   +T  ++ +  Y++ M PT    TI 
Sbjct: 106  IDDMNMPEVDAYGTVQPHTLIRQHMDYGHWYDRSKLTLKEIHNCQYVSCMNPTAGSFTIN 165

Query: 949  GRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKG-FADSIVKLSKNIVAATFHVYSEST 1007
             RL RH  + ++    +  LS I+  +L  H + G  + ++ K S  +V A   ++ +  
Sbjct: 166  SRLQRHFCVFALSFPGQDALSTIYNIILTQHLALGSVSAALQKSSPPLVDAALALHQKIA 225

Query: 1008 KVFLPIPSKSHYVFNLRDFAKVIMGLTQLPASHCKAPDKMYKLWTHE 1054
              FLP   K HYVFNLRD + +  GL        K+P  + +LW HE
Sbjct: 226  TTFLPTAIKFHYVFNLRDLSNIFQGLLFSSVECLKSPWDLIRLWLHE 272

the 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This particular family is the D3 and is an ATP binding site. Length = 272

>gnl|CDD|193250 pfam12774, AAA_6, Hydrolytic ATP binding site of dynein motor region D1

 Score =  104 bits (260), Expect = 8e-25
 Identities = 45/68 (66%), Positives = 53/68 (77%)

Query: 629 YGYEYLGNSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQC 688
           Y YEYLGN+ RLVITPLTDRCY TL  +L L + GAP GPAGTGKTET+KDL +A+    
Sbjct: 1   YSYEYLGNTPRLVITPLTDRCYITLTQSLHLTMSGAPAGPAGTGKTETTKDLGRALGIMV 60

Query: 689 IVFNCSDR 696
            VFNCS++
Sbjct: 61  YVFNCSEQ 68

the 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This particular family is the D1 unit of the motor and contains the hydrolytic ATP binding site. Length = 231

>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton]

 Score = 70.0 bits (171), Expect = 1e-11
 Identities = 48/386 (12%), Positives = 105/386 (27%), Gaps = 74/386 (19%)

Query: 1119 IIFPGAWACFDEFNRIELEVLSVVA-QQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFI 1177
             I        +E   ++    +++  + + S +   + +L   + E    S  P++ + +
Sbjct: 984  PICEEERG-TEESALLDEISRTILVDEYLNSDEFRMLEELNSAVVEHGLKS--PSTPVEM 1040

Query: 1178 TMNPGYAGRTELPDNLKVLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLC 1237
             +N     R  + +  +         +P +  I             + L  +I       
Sbjct: 1041 IINE----RNIVLEIGRRALDMFLSNIP-FGAIKSRR---------ESLDREIGAFNNEV 1086

Query: 1238 SEQLSSQSHYDYGMRAVKSVLNAAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLF 1297
                  +    +    +        SLK K+   +E    L  I+ +         LPL 
Sbjct: 1087 DGIAREEDELMF--YPMF------KSLKAKHRMLEEKTEYLNKILSIT-------GLPLI 1131

Query: 1298 IGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILVRHGLMVV 1357
                ++    I+    + D      +      + Q +   + + +     +         
Sbjct: 1132 SDTLRER---IDTLDAEWDSFCRISESLKKYESQQVSGLDVAQFVSFLRSVDTGAFHAEY 1188

Query: 1358 GESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEW 1417
               F  K   Y    D L  +   KS  +K+                    ++  A  E 
Sbjct: 1189 FRVFLCKIKHYTDACDYLWHV---KSPYVKK--------------------KYFDADMEL 1225

Query: 1418 RDGILAKTFREMAVSTTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNT 1477
            R   L     +M       +     +      ++E     +   K      GE       
Sbjct: 1226 RQFFLMFNREDMEARLADSKMEYEVER-----YVEKTKAEVSSLKLELSSVGE------- 1273

Query: 1478 MNLIFECENLEFASPATVSRVGMIYF 1503
              ++    NL  +    V R  + Y 
Sbjct: 1274 GQVVV--SNLG-SIGDKVGRCLVEYD 1296

Length = 3164

>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton]

 Score = 69.6 bits (170), Expect = 1e-11
 Identities = 48/280 (17%), Positives = 99/280 (35%), Gaps = 19/280 (6%)

Query: 871  RNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVD 930
             N      Y + +++   +  D++N+P    Y     +  LR +++ +  +    V+ V 
Sbjct: 1549 PNTGVVRLYPKPVVKDLVLFCDEINLPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVT 1608

Query: 931  LVDIIYI----TAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFAD 986
            +  II                  R +R    +       A+L  I+ +VL   +     D
Sbjct: 1609 ICGIILYGACNPGTDEGRVKYYERFIRKPVFVFCCYPELASLRNIYEAVLMGSYL--CFD 1666

Query: 987  SIVKLSKNIVAATFHVYSES---TKVFLPIPSKSHYVFNLRDFAKVIMGLTQLPASHCKA 1043
               +LS+  ++A+  +Y  S   TK FL    + +Y +  R+  + +  +     +    
Sbjct: 1667 EFNRLSEETMSASVELYLSSKDKTKFFL----QMNYGYKPRELTRSLRAIFGYAETRIDT 1722

Query: 1044 PD-KMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKTIS 1102
            PD  +   W  E +R   DRLV + +  +    +     +     + E +   I +  I+
Sbjct: 1723 PDVSLIIDWYCEAIREKIDRLVQQKESSTSRQDL----YDFGLRAIREMIAGHIGEAEIT 1778

Query: 1103 ADDLRSLFFGNFLGNTIIFPGAWACFDEFNRIELEVLSVV 1142
               +        L    +          F    L+V +V 
Sbjct: 1779 FSMILFFGM-ACLLKKDLAVFVEEVRKIFGSSHLDVEAVA 1817

Length = 3164

>gnl|CDD|193251 pfam12775, AAA_7, P-loop containing dynein motor region D3

 Score = 60.3 bits (146), Expect = 1e-09
 Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 699 FPPNLRPSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKY 758
             P +     ++ T+ T    +F++L ++   P+M VG  GTGKS +V + L +L  D Y
Sbjct: 3   LDPEMPLQACLVHTSETIRVRYFMDLLMERQRPVMLVGNAGTGKSVLVGDKLASLDPDAY 62

Query: 759 LPNIINFSARTSSNITQEMIMAKLDRRRKGVYGPAMGKKYIVFIAGSLKIKYPEKDEFVI 818
           L   + F+  T+S + Q ++   L+++    YGP   KK + FI     +  PE D +  
Sbjct: 63  LVKNVPFNYYTTSAMLQAVLEKPLEKKAGRNYGPPGTKKLVYFID---DMNMPEVDAYGT 119

Query: 819 V 819
           V
Sbjct: 120 V 120

the 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This particular family is the D3 and is an ATP binding site. Length = 272

>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton]

 Score = 62.3 bits (151), Expect = 2e-09
 Identities = 37/354 (10%), Positives = 95/354 (26%), Gaps = 23/354 (6%)

Query: 336 SSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEME--DMLKNFNKCNLMLEL 393
           S ED+M  +P       ++    + I   V      +     +  D L  F K    ++ 
Sbjct: 636 SLEDLMPLIPHAVHRKMSLVSGVRGIYKRVVSGCEAINTILEDVGDDLDLFYK---EMDQ 692

Query: 394 IQKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSL 453
           +   +   L  +     R      +EL++ + E ++ +       K      +     S 
Sbjct: 693 VFMSIEKVLGLRWREVERA--SEVEELMDRVRELENRVYSYRFFVKKIAKEEMKTVFSSR 750

Query: 454 EIIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERV 513
            I        +  A  G  R  + K +V + + +    ++    +    ++    + E  
Sbjct: 751 -IQKKEPFSLDSEAYVGFFRLYE-KSIVIRGINRSMGRVLSQYLE----SVQEALEIEDG 804

Query: 514 VWVTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKLLMSERI 573
            +      +    +         E        D  L +  + ++ +     G        
Sbjct: 805 SFFVSRHRVRDGGLEKGRGCDAWENC-----FDPPLSEYFRILEKIFPSEEGYFFDEVLK 859

Query: 574 TICALIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYYN-VNNLVNVCMITTTVQYGYE 632
            +     I    +E++  +       +E    +S       +         +      + 
Sbjct: 860 RLDPGHEIKSRIEEIIRMVTVKYDFCLEVLGSVSISELPQGLYKRFIKVRSSYRSAEMFA 919

Query: 633 YLGNSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAK 686
                  +    +    ++ L  A+   +         T  +     L     +
Sbjct: 920 KNTIPFFVFEHSMDTSQHQKLFEAVCDEVCRF----VDTENSRVYGMLVAGKGR 969

Length = 3164

>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton]

 Score = 61.5 bits (149), Expect = 4e-09
 Identities = 86/389 (22%), Positives = 151/389 (38%), Gaps = 82/389 (21%)

Query: 1119 IIFPGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFIT 1178
             +  G++ CFDEFNR+  E +S   +   S +        K  F             F+ 
Sbjct: 1656 AVLMGSYLCFDEFNRLSEETMSASVELYLSSK-------DKTKF-------------FLQ 1695

Query: 1179 MNPGYAGRTELPDNLKVLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCS 1238
            MN GY  R EL  +L+ +F   A    D   +  I  +       +   +++V   K  S
Sbjct: 1696 MNYGYKPR-ELTRSLRAIF-GYAETRIDTPDVSLIIDWYCE--AIREKIDRLV-QQKESS 1750

Query: 1239 EQLSSQSHYDYGMRAVKSVLNAAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFI 1298
               S Q  YD+G+RA+               E     I    I               F 
Sbjct: 1751 T--SRQDLYDFGLRAI--------------REMIAGHIGEAEIT--------------FS 1780

Query: 1299 GIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILVRHGLMVVG 1358
             I         L   D    +E+++      +        +  +    ++  R GL+VVG
Sbjct: 1781 MILFFGMA--CLLKKDLAVFVEEVRKIFGSSHLDVEAVAYKDALL--HILRSRRGLLVVG 1836

Query: 1359 ESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWR 1418
                 K             I     A   EF       NP+++   +++G  D  + ++R
Sbjct: 1837 GHGVLKGVL----------IRGACDAR--EFVCWL---NPRNMR--EIFGHRDELTGDFR 1879

Query: 1419 DGILAKTFREMAVSTTPDRK-WIMFDG-PIDAVWIENMNTVLDDNKKLCLING-EIIKMS 1475
            D +  +  R    +    R+   +F+  P+++ ++E+ N +LD+N+ LCL +G E I++ 
Sbjct: 1880 DSLKVQDLR---RNIHGGRECLFIFESIPVESSFLEDFNPLLDNNRFLCLFSGNERIRIP 1936

Query: 1476 NTMNLIFECENLEFASPATVSRVGMIYFE 1504
              +  +FE  +LE  + AT++RV ++Y E
Sbjct: 1937 ENLRFVFESTSLEKDTEATLTRVFLVYME 1965

Length = 3164

>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily)

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 15/98 (15%)

Query: 731 PMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTS-SNITQEM-IMAKLDRRRKG 788
            ++ VGP GTGKS +   L   LS        +  +  T+  ++     I         G
Sbjct: 1   GVLLVGPPGTGKSELAERLAAALSNRPVF--YVQLTRDTTEEDLKGRRNIDPGGASWVDG 58

Query: 789 VYGPAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDV 826
               A  +  I  +           DE       +++ 
Sbjct: 59  PLVRAAREGEIAVL-----------DEINRANPDVLNS 85

This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 135

>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 2/79 (2%)

Query: 724 LYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLD 783
           L L     ++  GP GTGK+T+   +   L +       +N S      +  E+    L 
Sbjct: 14  LELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLV 73

Query: 784 RRRKGVYGPAMGKKYIVFI 802
           R    +      K  ++FI
Sbjct: 74  RLLFEL--AEKAKPGVLFI 90

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151

>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily)

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 33/155 (21%), Positives = 55/155 (35%), Gaps = 31/155 (20%)

Query: 1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDS 1412
            G+++VG    GK+     LA+ L    + +            +   +  T   L G  + 
Sbjct: 1    GVLLVGPPGTGKS----ELAERLAAALSNRPVFY--------VQLTRDTTEEDLKGRRNI 48

Query: 1413 A--SHEWRDGILAKTFREMAVSTTPDRKWIMFDGPID---AVWIENMNTVLDDNKKLCLI 1467
                  W DG L +  RE           I     I+      + ++ ++LD+ + L   
Sbjct: 49   DPGGASWVDGPLVRAARE---------GEIAVLDEINRANPDVLNSLLSLLDERRLLLPE 99

Query: 1468 NGEIIKMSNT-MNLIFECENL----EFASPATVSR 1497
             GE++K +     LI     L       SPA  SR
Sbjct: 100  GGELVKAAPDGFRLIATMNPLDRGLNELSPALRSR 134

This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1513
PF08393	408	DHC_N2: Dynein heavy chain, N-terminal region 2; I	100.0
PF12774	231	AAA_6: Hydrolytic ATP binding site of dynein motor	100.0
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	100.0
COG5245	3164	DYN1 Dynein, heavy chain [Cytoskeleton]	100.0
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	100.0
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	100.0
KOG3595|consensus	1395		100.0
KOG1808|consensus	1856		99.94
KOG1808|consensus	1856		99.88
COG5245	3164	DYN1 Dynein, heavy chain [Cytoskeleton]	99.81
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	99.46
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	99.38
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	99.37
PHA02244	383	ATPase-like protein	99.24
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.22
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.18
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	99.18
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.17
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	99.15
CHL00095	821	clpC Clp protease ATP binding subunit	98.99
PRK10865	857	protein disaggregation chaperone; Provisional	98.98
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	98.85
PHA02244	383	ATPase-like protein	98.66
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	98.65
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	98.54
PF07726	131	AAA_3: ATPase family associated with various cellu	98.52
COG0714	329	MoxR-like ATPases [General function prediction onl	98.42
KOG0733|consensus	802		98.29
KOG0736|consensus	953		98.27
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	98.25
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	98.17
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	98.14
KOG0730|consensus	693		98.06
COG0714	329	MoxR-like ATPases [General function prediction onl	97.88
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	97.79
PRK00411	394	cdc6 cell division control protein 6; Reviewed	97.78
KOG0735|consensus	952		97.66
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	97.65
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.64
CHL00181	287	cbbX CbbX; Provisional	97.62
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	97.62
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	97.55
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	97.54
PRK08084	235	DNA replication initiation factor; Provisional	97.52
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.49
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	97.48
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	97.44
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	97.41
PF00004	132	AAA: ATPase family associated with various cellula	97.41
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	97.4
PRK07940	394	DNA polymerase III subunit delta'; Validated	97.4
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	97.39
PRK12422	445	chromosomal replication initiation protein; Provis	97.39
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.36
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	97.36
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	97.34
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	97.33
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	97.33
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	97.31
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.31
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	97.29
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	97.28
PF12774	231	AAA_6: Hydrolytic ATP binding site of dynein motor	97.27
PRK13342	413	recombination factor protein RarA; Reviewed	97.27
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	97.25
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	97.25
CHL00195	489	ycf46 Ycf46; Provisional	97.25
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	97.23
PLN03025	319	replication factor C subunit; Provisional	97.22
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.18
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	97.17
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	97.17
PRK03992	389	proteasome-activating nucleotidase; Provisional	97.16
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	97.16
CHL00176	638	ftsH cell division protein; Validated	97.14
KOG0738|consensus	491		97.14
COG2256	436	MGS1 ATPase related to the helicase subunit of the	97.14
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	97.13
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	97.12
KOG0744|consensus	423		97.12
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	97.11
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	97.1
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	97.1
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	97.09
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	97.09
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	97.08
KOG0733|consensus	802		97.08
PHA02544	316	44 clamp loader, small subunit; Provisional	97.07
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	97.05
PRK00149	450	dnaA chromosomal replication initiation protein; R	97.05
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	97.03
PF00004	132	AAA: ATPase family associated with various cellula	97.01
PRK09862	506	putative ATP-dependent protease; Provisional	96.99
PRK12402	337	replication factor C small subunit 2; Reviewed	96.99
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	96.97
PHA02544	316	44 clamp loader, small subunit; Provisional	96.96
PRK06893	229	DNA replication initiation factor; Validated	96.96
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	96.96
PRK14087	450	dnaA chromosomal replication initiation protein; P	96.95
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	96.95
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	96.93
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	96.93
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	96.93
PTZ00112	1164	origin recognition complex 1 protein; Provisional	96.93
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	96.9
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	96.9
PRK04195	482	replication factor C large subunit; Provisional	96.9
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	96.89
PRK14088	440	dnaA chromosomal replication initiation protein; P	96.89
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	96.88
CHL00181	287	cbbX CbbX; Provisional	96.88
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	96.88
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	96.88
KOG0730|consensus	693		96.87
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	96.87
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	96.86
PRK05564	313	DNA polymerase III subunit delta'; Validated	96.85
smart00350	509	MCM minichromosome maintenance proteins.	96.85
PRK08727	233	hypothetical protein; Validated	96.84
PRK06871	325	DNA polymerase III subunit delta'; Validated	96.83
PRK12402	337	replication factor C small subunit 2; Reviewed	96.82
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	96.82
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	96.82
PRK08699	325	DNA polymerase III subunit delta'; Validated	96.81
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	96.8
COG2256	436	MGS1 ATPase related to the helicase subunit of the	96.8
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	96.79
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	96.78
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	96.78
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	96.78
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	96.77
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	96.77
PRK09112	351	DNA polymerase III subunit delta'; Validated	96.77
PRK04195	482	replication factor C large subunit; Provisional	96.77
PF07726	131	AAA_3: ATPase family associated with various cellu	96.76
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	96.75
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	96.75
PF05729	166	NACHT: NACHT domain	96.75
KOG0478|consensus	804		96.74
PRK05642	234	DNA replication initiation factor; Validated	96.72
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	96.72
PRK14086	617	dnaA chromosomal replication initiation protein; P	96.72
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	96.71
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	96.69
PRK06090	319	DNA polymerase III subunit delta'; Validated	96.69
COG3829	560	RocR Transcriptional regulator containing PAS, AAA	96.68
PRK13341	725	recombination factor protein RarA/unknown domain f	96.68
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	96.68
PRK13531	498	regulatory ATPase RavA; Provisional	96.67
PLN03025	319	replication factor C subunit; Provisional	96.67
PRK06964	342	DNA polymerase III subunit delta'; Validated	96.65
PRK08903	227	DnaA regulatory inactivator Hda; Validated	96.65
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	96.63
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	96.63
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	96.61
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	96.6
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	96.59
PRK11608	326	pspF phage shock protein operon transcriptional ac	96.58
PRK13531	498	regulatory ATPase RavA; Provisional	96.56
PRK10865	857	protein disaggregation chaperone; Provisional	96.56
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	96.55
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	96.55
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.53
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	96.52
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	96.52
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	96.49
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	96.49
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	96.45
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	96.44
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	96.43
PRK07471	365	DNA polymerase III subunit delta'; Validated	96.42
PRK09087	226	hypothetical protein; Validated	96.42
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.41
PRK08769	319	DNA polymerase III subunit delta'; Validated	96.41
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	96.4
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	96.4
PRK00440	319	rfc replication factor C small subunit; Reviewed	96.38
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	96.37
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	96.36
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	96.36
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	96.35
CHL00206	2281	ycf2 Ycf2; Provisional	96.34
PRK08058	329	DNA polymerase III subunit delta'; Validated	96.34
KOG0726|consensus	440		96.34
PRK05707	328	DNA polymerase III subunit delta'; Validated	96.33
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	96.32
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	96.32
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	96.31
PRK13342	413	recombination factor protein RarA; Reviewed	96.31
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	96.31
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	96.3
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	96.3
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	96.3
PRK00440	319	rfc replication factor C small subunit; Reviewed	96.24
KOG2028|consensus	554		96.23
PRK08118	167	topology modulation protein; Reviewed	96.2
PRK13808	333	adenylate kinase; Provisional	96.15
PRK07399	314	DNA polymerase III subunit delta'; Validated	96.13
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	96.13
CHL00095	821	clpC Clp protease ATP binding subunit	96.12
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	96.12
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	96.11
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	96.1
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	96.1
KOG0734|consensus	752		96.1
COG0606	490	Predicted ATPase with chaperone activity [Posttran	96.09
PF00493	331	MCM: MCM2/3/5 family This family extends the MCM d	96.09
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	96.08
PRK05917	290	DNA polymerase III subunit delta'; Validated	96.07
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	96.06
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	96.04
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	96.04
PRK07993	334	DNA polymerase III subunit delta'; Validated	96.03
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	96.01
PRK14532	188	adenylate kinase; Provisional	96.0
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	95.99
PRK06620	214	hypothetical protein; Validated	95.98
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	95.97
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	95.94
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	95.94
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	95.93
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	95.91
PRK15424	538	propionate catabolism operon regulatory protein Pr	95.9
PF13173	128	AAA_14: AAA domain	95.88
PRK14530	215	adenylate kinase; Provisional	95.87
KOG0743|consensus	457		95.85
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	95.83
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	95.83
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	95.83
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	95.8
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	95.79
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	95.75
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	95.73
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	95.73
smart00350	509	MCM minichromosome maintenance proteins.	95.72
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	95.7
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	95.69
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	95.69
PRK08084	235	DNA replication initiation factor; Provisional	95.69
PRK06851	367	hypothetical protein; Provisional	95.65
KOG0482|consensus	721		95.64
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	95.63
KOG2004|consensus	906		95.62
PTZ00111	915	DNA replication licensing factor MCM4; Provisional	95.61
PF12780	268	AAA_8: P-loop containing dynein motor region D4; I	95.61
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	95.59
PRK15424	538	propionate catabolism operon regulatory protein Pr	95.57
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	95.57
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	95.57
PTZ00088	229	adenylate kinase 1; Provisional	95.57
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	95.57
PRK05022	509	anaerobic nitric oxide reductase transcription reg	95.55
KOG0727|consensus	408		95.53
KOG0742|consensus	630		95.53
COG0593	408	DnaA ATPase involved in DNA replication initiation	95.52
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	95.51
PRK14526	211	adenylate kinase; Provisional	95.51
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	95.48
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	95.48
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	95.48
KOG0989|consensus	346		95.42
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	95.42
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	95.4
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	95.4
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	95.4
PRK05818	261	DNA polymerase III subunit delta'; Validated	95.38
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	95.38
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	95.36
PRK06893	229	DNA replication initiation factor; Validated	95.35
PF13173	128	AAA_14: AAA domain	95.33
PRK03992	389	proteasome-activating nucleotidase; Provisional	95.32
PRK06217	183	hypothetical protein; Validated	95.32
PRK07261	171	topology modulation protein; Provisional	95.3
PRK11608	326	pspF phage shock protein operon transcriptional ac	95.3
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	95.29
PRK05022	509	anaerobic nitric oxide reductase transcription reg	95.22
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	95.21
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	95.2
KOG0991|consensus	333		95.2
PRK08181	269	transposase; Validated	95.2
PRK09862	506	putative ATP-dependent protease; Provisional	95.17
COG3829	560	RocR Transcriptional regulator containing PAS, AAA	95.16
PRK14527	191	adenylate kinase; Provisional	95.16
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	95.15
KOG0731|consensus	774		95.11
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	95.11
PRK08233	182	hypothetical protein; Provisional	95.1
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	95.01
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	95.0
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	95.0
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	94.98
PRK00279	215	adk adenylate kinase; Reviewed	94.91
smart00382	148	AAA ATPases associated with a variety of cellular	94.9
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	94.9
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	94.9
CHL00195	489	ycf46 Ycf46; Provisional	94.86
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	94.85
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	94.84
KOG0741|consensus	744		94.82
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	94.8
PTZ00112	1164	origin recognition complex 1 protein; Provisional	94.77
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	94.76
PRK14529	223	adenylate kinase; Provisional	94.76
COG1221	403	PspF Transcriptional regulators containing an AAA-	94.73
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	94.71
PF12780	268	AAA_8: P-loop containing dynein motor region D4; I	94.69
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	94.68
KOG0737|consensus	386		94.64
KOG0745|consensus	564		94.62
COG2204	464	AtoC Response regulator containing CheY-like recei	94.62
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	94.62
PRK06526	254	transposase; Provisional	94.59
PRK08116	268	hypothetical protein; Validated	94.58
COG1239	423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	94.55
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	94.48
KOG1051|consensus	898		94.47
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	94.47
PRK13341	725	recombination factor protein RarA/unknown domain f	94.44
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	94.42
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	94.41
PRK08181	269	transposase; Validated	94.39
PRK06762	166	hypothetical protein; Provisional	94.38
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	94.37
PLN02842	505	nucleotide kinase	94.37
TIGR02915	445	PEP_resp_reg putative PEP-CTERM system response re	94.37
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	94.36
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	94.33
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	94.26
cd03115	173	SRP The signal recognition particle (SRP) mediates	94.25
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	94.25
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	94.25
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	94.25
PLN02459	261	probable adenylate kinase	94.21
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	94.2
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	94.18
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	94.17
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	94.16
PRK05642	234	DNA replication initiation factor; Validated	94.14
KOG2028|consensus	554		94.13
KOG0744|consensus	423		94.08
PRK13833	323	conjugal transfer protein TrbB; Provisional	94.05
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	94.05
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	94.02
COG0606	490	Predicted ATPase with chaperone activity [Posttran	94.02
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	94.0
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	93.99
PRK06835	329	DNA replication protein DnaC; Validated	93.99
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	93.96
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	93.94
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	93.94
PLN02674	244	adenylate kinase	93.93
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	93.89
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	93.88
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	93.85
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	93.8
PRK06526	254	transposase; Provisional	93.74
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	93.74
KOG0652|consensus	424		93.72
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	93.68
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	93.64
CHL00176	638	ftsH cell division protein; Validated	93.63
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	93.6
COG3604	550	FhlA Transcriptional regulator containing GAF, AAA	93.59
COG4525	259	TauB ABC-type taurine transport system, ATPase com	93.56
TIGR00064	272	ftsY signal recognition particle-docking protein F	93.54
PF13555	62	AAA_29: P-loop containing region of AAA domain	93.53
PRK03839	180	putative kinase; Provisional	93.48
KOG0991|consensus	333		93.45
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	93.45
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	93.42
KOG0727|consensus	408		93.41
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	93.4
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	93.39
PF13245	76	AAA_19: Part of AAA domain	93.37
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	93.36
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	93.31
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	93.31
PRK13851	344	type IV secretion system protein VirB11; Provision	93.31
KOG1970|consensus	634		93.3
KOG0740|consensus	428		93.3
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	93.29
KOG0739|consensus	439		93.29
COG1241	682	MCM2 Predicted ATPase involved in replication cont	93.27
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	93.27
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	93.23
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	93.23
PRK10536	262	hypothetical protein; Provisional	93.22
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	93.2
KOG1534|consensus	273		93.16
PRK14088	440	dnaA chromosomal replication initiation protein; P	93.16
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	93.14
KOG1533|consensus	290		93.11
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	93.09
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	93.08
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	93.04
PRK00131	175	aroK shikimate kinase; Reviewed	93.02
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	92.99
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	92.98
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	92.95
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	92.94
PRK13851	344	type IV secretion system protein VirB11; Provision	92.94
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	92.93
COG1221	403	PspF Transcriptional regulators containing an AAA-	92.92
PHA02624	647	large T antigen; Provisional	92.89
PRK13764	602	ATPase; Provisional	92.87
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	92.83
PRK14531	183	adenylate kinase; Provisional	92.77
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	92.77
PRK07940	394	DNA polymerase III subunit delta'; Validated	92.75
COG1239	423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	92.73
PRK07132	299	DNA polymerase III subunit delta'; Validated	92.68
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	92.67
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	92.62
PF01580	205	FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00	92.6
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	92.6
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	92.59
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	92.58
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	92.57
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	92.54
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	92.53
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	92.52
PRK02496	184	adk adenylate kinase; Provisional	92.51
COG2204	464	AtoC Response regulator containing CheY-like recei	92.51
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	92.5
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	92.49
PRK13949	169	shikimate kinase; Provisional	92.47
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	92.46
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	92.4
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	92.39
smart00382	148	AAA ATPases associated with a variety of cellular	92.38
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	92.37
KOG0743|consensus	457		92.32
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	92.31
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	92.31
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	92.29
PRK00149	450	dnaA chromosomal replication initiation protein; R	92.29
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	92.29
PRK13695	174	putative NTPase; Provisional	92.25
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	92.23
PRK13947	171	shikimate kinase; Provisional	92.21
PRK08116	268	hypothetical protein; Validated	92.17
PRK07276	290	DNA polymerase III subunit delta'; Validated	92.13
COG3604	550	FhlA Transcriptional regulator containing GAF, AAA	92.12
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	92.12
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	92.1
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	92.05
PRK14738	206	gmk guanylate kinase; Provisional	92.0
PRK11361	457	acetoacetate metabolism regulatory protein AtoC; P	91.98
PF05729	166	NACHT: NACHT domain	91.92
KOG0480|consensus	764		91.91
TIGR01448	720	recD_rel helicase, putative, RecD/TraA family. Thi	91.89
PHA02774	613	E1; Provisional	91.88
PRK10436	462	hypothetical protein; Provisional	91.87
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	91.84
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	91.84
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	91.84
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	91.84
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	91.83
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	91.82
PRK00625	173	shikimate kinase; Provisional	91.8
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	91.74
PRK06547	172	hypothetical protein; Provisional	91.71
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	91.69
COG4619	223	ABC-type uncharacterized transport system, ATPase	91.63
PRK15115	444	response regulator GlrR; Provisional	91.61
PRK00300	205	gmk guanylate kinase; Provisional	91.61
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	91.61
KOG0735|consensus	952		91.6
PRK14528	186	adenylate kinase; Provisional	91.59
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	91.54
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	91.54
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	91.53
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	91.53
PRK10416	318	signal recognition particle-docking protein FtsY;	91.51
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	91.5
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	91.48
PF09439	181	SRPRB: Signal recognition particle receptor beta s	91.47
TIGR01818	463	ntrC nitrogen regulation protein NR(I). This model	91.46
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	91.43
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	91.41
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	91.41
PRK08903	227	DnaA regulatory inactivator Hda; Validated	91.38
PRK00411	394	cdc6 cell division control protein 6; Reviewed	91.38
PRK05541	176	adenylylsulfate kinase; Provisional	91.38
TIGR01447	586	recD exodeoxyribonuclease V, alpha subunit. This f	91.33
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	91.32
PRK05480	209	uridine/cytidine kinase; Provisional	91.31
PLN02165	334	adenylate isopentenyltransferase	91.18
PRK15455	644	PrkA family serine protein kinase; Provisional	91.15
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	91.12
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	91.1
PLN02200	234	adenylate kinase family protein	91.08
PRK04040	188	adenylate kinase; Provisional	91.07
TIGR02915	445	PEP_resp_reg putative PEP-CTERM system response re	91.04
TIGR00235	207	udk uridine kinase. Model contains a number of lon	90.98
PRK05057	172	aroK shikimate kinase I; Reviewed	90.98
PRK14737	186	gmk guanylate kinase; Provisional	90.96
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	90.91
PF00005	137	ABC_tran: ABC transporter This structure is on hol	90.91
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	90.89

>PF08393 DHC_N2: Dynein heavy chain, N-terminal region 2; InterPro: IPR013602 Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules

Probab=100.00  E-value=1.1e-75  Score=718.86  Aligned_cols=405  Identities=44%  Similarity=0.825  Sum_probs=324.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHH
Q psy4730          95 ETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSKLES  174 (1513)
Q Consensus        95 ~~L~~l~~el~~~~~lW~~~~~w~~~~~~w~~~pf~~ld~~~i~~~l~~~~~~l~~l~k~l~~~~~~~~v~~~l~~~I~~  174 (1513)
                      ++|+++.+++++++.+|.++.+|....+.|+++||.++|+++++++++.+.+.+.++.+.+++++    ++..+++.|++
T Consensus         1 ~~L~~l~~~l~~~~~lW~~~~~~~~~~~~w~~~~~~~ld~~~l~~~v~~~~~~l~~l~~~~~~~~----v~~~l~~~i~~   76 (408)
T PF08393_consen    1 EELEELEKELEPLKKLWSLISEWQEQLEEWMNTPFSDLDVEELEEEVEEFLKQLRKLPKSLREWP----VYKELKKKIEE   76 (408)
T ss_dssp             --------------------------HHHHHH--TTT---------------------------------HHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhcCHHHHHHHHHHHHHHHHHhhHHhhhhH----HHHHHHHHHHH
Confidence            36889999999999999999999999999999999999999999999999999999999998755    89999999999


Q ss_pred             HHhhhHHHHHhcCCcccHHhHHHHHHHhC-CCcCCCccccHHHHHhhchhhhhhHHHHHHHHhHhHHHHHHHHHHHHHhh
Q psy4730         175 FRKEVPILQCISNPGMEERHWKILSDELG-QDITPNDQTSLKNMLDLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEW  253 (1513)
Q Consensus       175 f~~~lpll~~L~np~lk~RHW~~I~~~lg-~~~~~~~~~TL~~Ll~l~l~~~~~~I~~I~~~A~~E~~iE~~L~~I~~~W  253 (1513)
                      |+.++|+|+.|+||+|++|||++|++++| .++ +++++||++|+++|+.+|.+.|.+|+.+|++|+.||++|++|++.|
T Consensus        77 f~~~lpli~~L~~~~mk~rHW~~l~~~~g~~~~-~~~~~tL~~Ll~~~l~~~~~~I~~I~~~A~~E~~ie~~L~~i~~~W  155 (408)
T PF08393_consen   77 FKKYLPLIQDLRNPAMKPRHWKQLFQILGIQDF-PNESLTLQDLLDLGLLDHEDKIEEISEQAQKEYKIEQSLEKIKEEW  155 (408)
T ss_dssp             HHHHTHHHHHTTSTT--CHHHHHHHHCTT------TTS-SHHHHHHS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcHHHHHhcCccchHHHHHHHHHHhccccc-ccccccHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999 788 7789999999999999999999999999999999999999999999


Q ss_pred             cccEEEeEEeccCCceeecChHHHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy4730         254 SDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEP  333 (1513)
Q Consensus       254 ~~~~f~~~~~~~~~~~il~~~dei~~~Led~l~~L~~m~~S~~~~~~~~~i~~we~kL~~~~~iL~~w~~vQ~~W~yL~~  333 (1513)
                      ++++|++.+|+++++++|++++++++.|+||+++|++|++|||+++|++++.+|+++|.+++++|+.|..||++|+||+|
T Consensus       156 ~~~~f~~~~~~~~~~~il~~~~~i~~~led~~~~L~~m~~S~~~~~~~~~v~~w~~~L~~~~~il~~w~~~Q~~W~yL~~  235 (408)
T PF08393_consen  156 KNMEFEFVPYKDKDVFILKNWDEIIQQLEDHLLTLQSMKSSPFVKPFRDEVEEWEKKLNNIQEILEEWMEVQRKWMYLEP  235 (408)
T ss_dssp             CC-B-EEEEETTT-CEEEE-CHHHHHHHHHHHHHHHHTCSSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhceeeeeccccchhheecchHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCchhHhhhCHHHHHhHHhhHHHHHHHHHHhhcCCceeeecccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccc
Q psy4730         334 IFSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRLFFPRFF  413 (1513)
Q Consensus       334 iF~s~di~~~Lp~e~~~F~~v~~~~~~i~~~~~~~~~v~~~~~~~~l~~~L~~~~~~Le~I~k~L~~yLe~KR~~FPRfy  413 (1513)
                      ||+++||+++||.|+++|..|++.|+.+|+.+.++|+|+++|..+++.+.|+++++.|+.|+|+|.+|||+||..|||||
T Consensus       236 if~~~di~~~lp~e~~~F~~i~~~~~~i~~~~~~~~~v~~~~~~~~~~~~l~~~~~~l~~i~k~L~~~Le~kR~~FPRfy  315 (408)
T PF08393_consen  236 IFSSSDIKKQLPKEAKKFSSIDKEWRSIMKRAQKDPNVLSVCSNPDLLEKLESINESLEKIQKSLNDYLESKREAFPRFY  315 (408)
T ss_dssp             HTTSCCHCCCTHHHHHHHHHHHHHHHHHHHHHHCT-CCHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHH
T ss_pred             HhcchhHHHHHHHHHHHHHHcChHHHHHHHHHHhCcchhHHhhHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccee
Confidence            99988999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccChHHHHHHHhcCCCcchHHHHHHHHhhcccceeccc-ceeEEEeeecCCcEEEccCcccCCCCCCcHHHHHHHHHHHH
Q psy4730         414 FLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSD-SLEIIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLM  492 (1513)
Q Consensus       414 FLSd~eLL~ils~~~dp~~i~~~l~k~F~gI~~l~~~~-~~~I~g~~s~~GE~l~l~~~I~~~~~~g~ve~WL~~le~~m  492 (1513)
                      ||||+|||+|||+++||..+++|++||||||+++.|++ +..|+||+|.+||+++|.+||.+   .|+||.||++||++|
T Consensus       316 Flsd~eLl~ils~~~~~~~i~~~l~k~F~~i~~l~~~~~~~~i~~~~s~~gE~~~l~~~v~~---~~~ve~WL~~le~~m  392 (408)
T PF08393_consen  316 FLSDDELLEILSQSKDPEQIQPHLKKCFPGIKSLEFDENNNSITGMISAEGETLPLDKPVSI---EGPVEEWLNELEEEM  392 (408)
T ss_dssp             HC-HHHHHHHHHTTTTCHHHHHHHHHCCSSEEEEEE-TTSSEEEEEEETTS-EEEEEEEEES---SS-HHHHHHHHHHHH
T ss_pred             ecCcHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhccchhhhhhhcCCCCCeEEeCCcccC---CCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999975 45799999999999999998764   689999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy4730         493 IKSLQDICMMALGAY  507 (1513)
Q Consensus       493 k~sL~~~i~~~~~~~  507 (1513)
                      +.||+..++.|+.+|
T Consensus       393 ~~tl~~~~~~~~~~y  407 (408)
T PF08393_consen  393 KSTLKKQIRKCLEDY  407 (408)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999999987

Dyneins generally contain one to three heavy chains, where each heavy chain consists of a C-terminal globular head, a flexible microtubule-binding stalk, and a flexible N-terminal tail known as the cargo-binding domain []. The two categories of dyneins are the axonemal dyneins, which produce the bending motions that propagate along cilia and flagella, and the cytosolic dyneins, which drive a variety of fundamental cellular processes including nuclear migration, organisation of the mitotic spindle, chromosome separation during mitosis, and the positioning and function of many intracellular organelles. Cytoplasmic dyneins contain several accessory subunits ranging from light to intermediate chains. This entry represents a region found C-terminal to the dynein heavy chain N-terminal region 1 (IPR013594 from INTERPRO) in many members of this family. No functions seem to have been attributed specifically to this region. ; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A

Probab=100.00  E-value=1e-59  Score=522.80  Aligned_cols=148  Identities=66%  Similarity=1.014  Sum_probs=127.1

Q ss_pred             CCccccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccccceEEecCceEEEEEecCCCCCCCCCchhHHhhhhccc
Q psy4730        1122 PGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPGYAGRTELPDNLKVLFRSVA 1201 (1513)
Q Consensus      1122 ~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g~~i~~~p~~~iFiTmNp~y~gr~~LP~nLk~lFR~v~ 1201 (1513)
                      +|+|+|||||||++.+|||+++|++..|+.+++.+...+.++|++|.++|++++|+||||+|+||++||+|||++||||+
T Consensus        84 ~GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRpva  163 (231)
T PF12774_consen   84 SGAWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRPVA  163 (231)
T ss_dssp             HT-EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEEEE
T ss_pred             cCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhheeE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCChHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhhccCCCCCCcchhhHHHHHHHhhhhhhhCC
Q psy4730        1202 MMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAGSLKIKYP 1269 (1513)
Q Consensus      1202 ~~~PD~~~I~ei~L~~~GF~~a~~la~ki~~~~~l~~~~ls~q~~yd~glR~lk~vl~~a~~l~~~~~ 1269 (1513)
                      |+.||+.+|+|++|++.||.+|+.||+|++.+|++|++++|+|.|||||||++|+||+.|+++||..|
T Consensus       164 m~~PD~~~I~ei~L~s~GF~~a~~La~kl~~l~~l~~~~lS~q~hydfgLRalk~vl~~a~~~kr~~p  231 (231)
T PF12774_consen  164 MMVPDLSLIAEILLLSQGFKDAKSLAKKLVSLFQLCKEQLSKQDHYDFGLRALKSVLRMAGSLKRGDP  231 (231)
T ss_dssp             --S--HHHHHHHHHHCCCTSSHHHHHHHHHHHHHHHHHCS-SSTT---SHHHHHHHHHHHHHHHT---
T ss_pred             EeCCCHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHHHHhcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999865

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=100.00  E-value=1.1e-59  Score=537.94  Aligned_cols=268  Identities=43%  Similarity=0.778  Sum_probs=233.7

Q ss_pred             CCCCCCCCccccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeeccccccChhHHHHH
Q psy4730         698 TFPPNLRPSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEM  777 (1513)
Q Consensus       698 ~f~~~~~~~~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t~~~~~q~~  777 (1513)
                      +|.|+.++++++|||.|++|+.++++.++++++||||+||+|||||+++++++++++.+.+....++||+.|+++.+|++
T Consensus         2 ~~~~~~~~~~~~VpT~dt~r~~~ll~~l~~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~   81 (272)
T PF12775_consen    2 EYDPEMPFNEILVPTVDTVRYSYLLDLLLSNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKI   81 (272)
T ss_dssp             -----------T---HHHHHHHHHHHHHHHCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHC
T ss_pred             CcccccccceEEeCcHHHHHHHHHHHHHHHcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHH
Confidence            36788899999999999999999999999999999999999999999999999999888888889999999999999999


Q ss_pred             HHHHhhhhccCCCCCCCCceEEEEecccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCcCCCCCCh
Q psy4730         778 IMAKLDRRRKGVYGPAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDR  857 (1513)
Q Consensus       778 i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  857 (1513)
                      +++++++|+|++|||+.|+++|+|+                                                       
T Consensus        82 ie~~l~k~~~~~~gP~~~k~lv~fi-------------------------------------------------------  106 (272)
T PF12775_consen   82 IESKLEKRRGRVYGPPGGKKLVLFI-------------------------------------------------------  106 (272)
T ss_dssp             CCTTECECTTEEEEEESSSEEEEEE-------------------------------------------------------
T ss_pred             HhhcEEcCCCCCCCCCCCcEEEEEe-------------------------------------------------------
Confidence            9999999999999999999999998                                                       


Q ss_pred             hHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEE
Q psy4730         858 DELIEQIKINLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYI  937 (1513)
Q Consensus       858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~  937 (1513)
                                                        ||+|||.+|+||+|||+|+|||++|||||||+++++|+.++|++++
T Consensus       107 ----------------------------------DDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~v  152 (272)
T PF12775_consen  107 ----------------------------------DDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFV  152 (272)
T ss_dssp             ----------------------------------ETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEE
T ss_pred             ----------------------------------cccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEE
Confidence                                              9999999999999999999999999999999999999999999999


Q ss_pred             EeecCC--CCCCChhhhccceEeecCCCChHHHHHHHHHHhhhhhhc-cchhHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q psy4730         938 TAMIPT--MNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSK-GFADSIVKLSKNIVAATFHVYSESTKVFLPIP 1014 (1513)
Q Consensus       938 ~a~~~~--~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1014 (1513)
                      |||+|+  |+.|++||+|||+++++++|+.++|.+||++++.+++.. +|.+++..++.+|++||+++|+++.+.|+|+|
T Consensus       153 aa~~p~~Gr~~is~R~~r~f~i~~~~~p~~~sl~~If~~il~~~l~~~~f~~~v~~~~~~lv~ati~ly~~i~~~~~ptp  232 (272)
T PF12775_consen  153 AAMNPTGGRNPISPRFLRHFNILNIPYPSDESLNTIFSSILQSHLKNGGFPEDVQKLADKLVQATIELYQKIRQQFLPTP  232 (272)
T ss_dssp             EEESSTTT--SHHHHHHTTEEEEE----TCCHHHHHHHHHHHHHTCHTTSSGGGCCCHHHHHHHHHHHHHHHHHHS-TTT
T ss_pred             EecCCCCCCCCCChHHhhheEEEEecCCChHHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHHhhhcccCCCC
Confidence            999997  889999999999999999999999999999999999864 79999999999999999999999999999999


Q ss_pred             CCCccccchhhHHHHHhhhcccCCcccCChhhHHHhhhhh
Q psy4730        1015 SKSHYVFNLRDFAKVIMGLTQLPASHCKAPDKMYKLWTHE 1054 (1513)
Q Consensus      1015 ~~~hy~fnlrd~~~~~~g~~~~~~~~~~~~~~~~rl~~hE 1054 (1513)
                      .++||+|||||++||+||++++.++++.+..+|+|||.||
T Consensus       233 ~k~HY~FnlRDlsrv~qGil~~~~~~~~~~~~l~rLW~HE  272 (272)
T PF12775_consen  233 SKPHYTFNLRDLSRVFQGILLASPESIKTKESLLRLWVHE  272 (272)
T ss_dssp             TCTTTTSHHHHHHHHHHHHHHHHCTSSS-SHHHHHHHHHH
T ss_pred             ccceeeccHHHHHHHHHHHHhcChhhcCCHHHheEeecCC
Confidence            9999999999999999999999999999999999999999

>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]

Probab=100.00  E-value=2.6e-56  Score=544.39  Aligned_cols=1039  Identities=15%  Similarity=0.121  Sum_probs=751.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHH
Q psy4730          94 YETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSKLE  173 (1513)
Q Consensus        94 f~~L~~l~~el~~~~~lW~~~~~w~~~~~~w~~~pf~~ld~~~i~~~l~~~~~~l~~l~k~l~~~~~~~~v~~~l~~~I~  173 (1513)
                      ..++....++-+.+.-+|+.+..-++.......+||-  |.+.....+..+.+ ...+.+..+ ..    .+..+=..++
T Consensus       427 ~~~~~~~v~~~k~~~~v~~~~~~~~e~i~~~~~t~~~--d~~~~~~~la~~l~-~~e~~r~vk-~~----~~~~~fs~~n  498 (3164)
T COG5245         427 DAKVRSGVSFGKQEEFVSDIFNITFERIHGMDPTTLE--DDEEDTPALAILLG-QEEAGRFVK-LC----KIMRMFSFFN  498 (3164)
T ss_pred             HHHHHhHhhhhhHHHHHHHHHHHHHHHhhcCCCCcch--hhhhcCHHHHHHhc-chhhhhHHH-HH----HHHHHHHHHH
Confidence            3567777788889999999999988888999999998  55555555544443 222222211 00    1112222223


Q ss_pred             HHHhhhHHHHHhcCCcccHHhHHHHHHHhCCCcCCC-----ccccHHHHHhhchhhhhhHHHHHHHHhHhHHHHHHHHHH
Q psy4730         174 SFRKEVPILQCISNPGMEERHWKILSDELGQDITPN-----DQTSLKNMLDLGIRNILPKLEEVSLSASKEAELSQSLNK  248 (1513)
Q Consensus       174 ~f~~~lpll~~L~np~lk~RHW~~I~~~lg~~~~~~-----~~~TL~~Ll~l~l~~~~~~I~~I~~~A~~E~~iE~~L~~  248 (1513)
                      .+...-..+.+++..++|  ||..++. +|.-+-..     -.+.|.+..-++..+..-.+--+.+.|+   .++.++..
T Consensus       499 ~l~~~~~~~~~~~~~~~k--~~~~v~r-~g~~~lq~~~~~~~~~~l~~~~~~~~~~~~l~l~~~~e~s~---iv~~s~~r  572 (3164)
T COG5245         499 SLEMFSRRTLANRMAIVK--YLSSVVR-TGPLFLQRDFFGRMSELLMARDMFMEVDGVLRLFFGGEWSG---IVQLSGIR  572 (3164)
T ss_pred             HHHHHHHHHHHhHHHHHH--HHHHHHh-hchHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhHHH---HHHHhhhH
Confidence            333333455677777777  9999999 77532221     1234444444444455555566667776   88999999


Q ss_pred             HHHhhcccEEEeEEeccCCceeecChHHHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4730         249 MVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTW  328 (1513)
Q Consensus       249 I~~~W~~~~f~~~~~~~~~~~il~~~dei~~~Led~l~~L~~m~~S~~~~~~~~~i~~we~kL~~~~~iL~~w~~vQ~~W  328 (1513)
                      +...|...+.+               |++..-|.+.+..+-.|+.+.+   |+.. .+.+.+|....++-=      -.|
T Consensus       573 ~~k~~~e~q~~---------------~~irewc~~~l~~~~~~~~a~~---~e~~-~d~~~~l~~~s~~~v------~~~  627 (3164)
T COG5245         573 RAKRCVERQID---------------DEIREWCSSVLSDDFLEERAVR---VERG-ADGARRLRASSGSPV------LRR  627 (3164)
T ss_pred             HHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHH---HHcC-ccHHHHHHhccCCcH------HHH
Confidence            99999876553               5666667777777778888777   4444 556667766654321      578


Q ss_pred             HhhhccC-CchhHhhhCHHHHHhHHhhHHHHHHHHHHhhcCCceeeecccchHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy4730         329 MYLEPIF-SSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRL  407 (1513)
Q Consensus       329 ~yL~~iF-~s~di~~~Lp~e~~~F~~v~~~~~~i~~~~~~~~~v~~~~~~~~l~~~L~~~~~~Le~I~k~L~~yLe~KR~  407 (1513)
                      +.++.+. +.+|++..+|.+..+|.+..+.+|.|.+++..-...+.....|. .+.|.-..+.++.|..++..+|+.+|.
T Consensus       628 ld~y~~~~~~~dl~~~ip~~~~~~~sl~s~~~~i~~r~~~~~~~i~~i~~~~-~d~l~l~~~~~~~v~~si~~~l~~~~r  706 (3164)
T COG5245         628 LDEYLMMMSLEDLMPLIPHAVHRKMSLVSGVRGIYKRVVSGCEAINTILEDV-GDDLDLFYKEMDQVFMSIEKVLGLRWR  706 (3164)
T ss_pred             HHHHHHHhhhhhhcccccHHHHHHHHHHhhhhhhhhhhhcccchhheeeccC-CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888 58899999999999999999999999999876665555555443 445888889999999999999999999


Q ss_pred             cCCcccccChHHHHHHHhcCCCcchHHHHHHHHhhcccceecccceeEEEeeecCCcEEEccCcccCCCCCCcHHHHHHH
Q psy4730         408 FFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQ  487 (1513)
Q Consensus       408 ~FPRfyFLSd~eLL~ils~~~dp~~i~~~l~k~F~gI~~l~~~~~~~I~g~~s~~GE~l~l~~~I~~~~~~g~ve~WL~~  487 (1513)
                      .|||  |+.++||+.+++..++-..+.+++.|.|..+....+-.+ .|+|.-+-+||...+...+... .+..+..|++ 
T Consensus       707 ~~~r--~~~~~~l~~~v~~~~~~~~~~~f~~k~~~~~e~~~~~~~-~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~in-  781 (3164)
T COG5245         707 EVER--ASEVEELMDRVRELENRVYSYRFFVKKIAKEEMKTVFSS-RIQKKEPFSLDSEAYVGFFRLY-EKSIVIRGIN-  781 (3164)
T ss_pred             hhhh--hcchHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHH-HhccCCCccchHHhhhhhhhhH-HHHHHHHHhh-
Confidence            9999  899999999999999999999999999998887766554 6999999999998888876643 3457899999 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccc-hhhhhhcCCchhhhhhhhhhhcHHHHHHHhhccHHHHHHHHHHHHHHHHHHHhcC
Q psy4730         488 VEDLMIKSLQDICMMALGAYYKSE-RVVWVTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGK  566 (1513)
Q Consensus       488 le~~mk~sL~~~i~~~~~~~~~~~-~~~Wi~~~p~Qv~ll~~qI~wT~~ve~al~~~~l~~~~~~~~~~l~~l~~~~r~~  566 (1513)
                        +.|- ++-.+.++|++...... -+-.+..|-.|...+..+ .||.-+|.||+. .+..|...+...+.    .-.+.
T Consensus       782 --~s~~-~v~sq~~~~~~~~~~~~d~~~~vs~~~~~~~~l~~~-~~~~~~e~c~~~-~~s~y~~~~~~~~~----~~~~~  852 (3164)
T COG5245         782 --RSMG-RVLSQYLESVQEALEIEDGSFFVSRHRVRDGGLEKG-RGCDAWENCFDP-PLSEYFRILEKIFP----SEEGY  852 (3164)
T ss_pred             --hHHH-HHHHHHHHHHHHHhcCCcceEEEeeeehhhcccccc-cchHHHHHhcCc-hHHHHHHHHHHhcc----ccccc
Confidence              3343 66777777777664433 344567888999999989 999999999986 56665543322221    11111


Q ss_pred             CChHHHHHHHHHHHHHhcchHHHHHHHHcccCCcccchhhhhcceEeec-CeEEEEEcceEEEeeeeccCCccceeeccc
Q psy4730         567 LLMSERITICALIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYYNVN-NLVNVCMITTTVQYGYEYLGNSDRLVITPL  645 (1513)
Q Consensus       567 l~~~~r~ki~~LI~~~vh~rDiv~~L~~~~v~~~~~f~W~~qlRyy~~~-~~i~v~~~~~~~~YgyEY~G~~~rlV~Tpl  645 (1513)
                      .......++.++..+..|.-+|+..+....-....-.-|.+.-++|-.- +.+.+.+-+....|-|||.|.|.+++.||+
T Consensus       853 ~~d~v~k~l~~~~~~~~~~~~ii~~~~~~~~~~~~~l~~~~i~~~~q~l~~~~~~~~s~y~~~~~f~~~~ip~~~~~~~~  932 (3164)
T COG5245         853 FFDEVLKRLDPGHEIKSRIEEIIRMVTVKYDFCLEVLGSVSISELPQGLYKRFIKVRSSYRSAEMFAKNTIPFFVFEHSM  932 (3164)
T ss_pred             chHHHHHhcCchhhHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhheEeechhhHHHHHHHhcCCChhheechh
Confidence            2233455688888888898888888755433334455688877766321 246667777788999999999999999999


Q ss_pred             chHHHHHHHHHHHhhcCCCCCCCCCCCCccchHHHHHHhcCEEE------------------------------------
Q psy4730         646 TDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCI------------------------------------  689 (1513)
Q Consensus       646 t~r~~~~l~~al~~~~g~~~~G~~gtGKte~vk~La~~lG~~~~------------------------------------  689 (1513)
                      --.-+.+++.|++...+-.    +|||||++++.++..+||-+=                                    
T Consensus       933 ~~~~~~~l~~a~~~~~c~f----~~t~~s~~~~~~~~~~gri~d~~~~~sri~~g~~~~~~~g~~e~~~lde~~~~i~~~ 1008 (3164)
T COG5245         933 DTSQHQKLFEAVCDEVCRF----VDTENSRVYGMLVAGKGRIYDGTEPRSRIEAGPICEEERGTEESALLDEISRTILVD 1008 (3164)
T ss_pred             hhhhHHHHHHHHHHHHhee----cCCCCceeHHHHhcCCCeeecCCChhhhhhccceehhhccchhHHHHHHHHHHHhhh
Confidence            8888999999998776433    688888888888876666220                                    


Q ss_pred             --------------------------------------------------------------------------------
Q psy4730         690 --------------------------------------------------------------------------------  689 (1513)
Q Consensus       690 --------------------------------------------------------------------------------  689 (1513)
                                                                                                      
T Consensus      1009 ~~~~~~~~~~~~~~~s~~~e~~~~sp~t~v~~~in~r~~~~e~~~~a~~~f~~~~p~g~i~~~~~sl~~~i~~f~~~~~~ 1088 (3164)
T COG5245        1009 EYLNSDEFRMLEELNSAVVEHGLKSPSTPVEMIINERNIVLEIGRRALDMFLSNIPFGAIKSRRESLDREIGAFNNEVDG 1088 (3164)
T ss_pred             HHhcchHHHHHHHHHHHHHHcCCCCCCCceEEEecchhhHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhhh
Confidence                                                                                            


Q ss_pred             ----------------EEEcCCC-------------------------------------------------------CC
Q psy4730         690 ----------------VFNCSDR-------------------------------------------------------PT  698 (1513)
Q Consensus       690 ----------------v~ncs~~-------------------------------------------------------~~  698 (1513)
                                      .-||+..                                                       ++
T Consensus      1089 ~~~~~~~~~f~~~~~~l~~~~~~l~e~~e~~~~i~~~~~lp~i~dtl~e~~~~~da~~~~~~~~s~~~~~~~s~q~sg~~ 1168 (3164)
T COG5245        1089 IAREEDELMFYPMFKSLKAKHRMLEEKTEYLNKILSITGLPLISDTLRERIDTLDAEWDSFCRISESLKKYESQQVSGLD 1168 (3164)
T ss_pred             hhcccchhhhHHHHHHHhhcchHHHHhhHHHHHHHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHhhccccCcc
Confidence                            0000000                                                       00


Q ss_pred             --------------------------------------------------------------------------------
Q psy4730         699 --------------------------------------------------------------------------------  698 (1513)
Q Consensus       699 --------------------------------------------------------------------------------  698 (1513)
                                                                                                      
T Consensus      1169 ~a~f~~f~~~~~t~~~~~~~~~~~~~k~~~~~~~~d~~~h~~~~yv~~~~~~a~~e~r~~f~~~~r~d~~~~~~~s~~~~ 1248 (3164)
T COG5245        1169 VAQFVSFLRSVDTGAFHAEYFRVFLCKIKHYTDACDYLWHVKSPYVKKKYFDADMELRQFFLMFNREDMEARLADSKMEY 1248 (3164)
T ss_pred             HHHHHHHHHHhhhcHHHHHHHHHhhcccchhhhhhccccccCchhhHHHHhhhhHHHHHHHHHHhHHhhhhhhccceEEE
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy4730         699 --------------------------------------------------------------------------------  698 (1513)
Q Consensus       699 --------------------------------------------------------------------------------  698 (1513)
                                                                                                      
T Consensus      1249 ~~~~yve~~~a~~~~~kl~~~~~ge~~v~~~nl~s~~~~v~rc~~~~ds~~~~St~~~~~~~lg~T~~~Ld~~ld~fs~~ 1328 (3164)
T COG5245        1249 EVERYVEKTKAEVSSLKLELSSVGEGQVVVSNLGSIGDKVGRCLVEYDSISRLSTKGVFLDELGDTKRYLDECLDFFSCF 1328 (3164)
T ss_pred             ehHHHHHHHHhhhccceeeeccCCCceEEEeeCCCccchhheeeeeecccchhccchhhHHhhccchhhhhhhhhhhhHH
Confidence                                                                                            


Q ss_pred             ---------------------------------C----------------------------------------------
Q psy4730         699 ---------------------------------F----------------------------------------------  699 (1513)
Q Consensus       699 ---------------------------------f----------------------------------------------  699 (1513)
                                                       |                                              
T Consensus      1329 ~~~~~~~de~~m~~~a~~~~fs~dl~hI~~~rrF~~~~~~~~~s~~l~~~s~~~~~~L~~K~l~~~mk~~I~~vL~~~~~ 1408 (3164)
T COG5245        1329 EEVQKEIDELSMVFCADALRFSADLYHIVKERRFSGVLAGSDASESLGGKSIELAAILEHKDLIVEMKRGINDVLKLRIF 1408 (3164)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhhhHhHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHh
Confidence                                             0                                              


Q ss_pred             -------CC----------------------------C--------------------C-CCccccccchhhhhHHHHHH
Q psy4730         700 -------PP----------------------------N--------------------L-RPSDLIIPTNVTCMQNFFIN  723 (1513)
Q Consensus       700 -------~~----------------------------~--------------------~-~~~~~~v~t~~~~~~~~~~~  723 (1513)
                             .|                            +                    . ..-++++||.+|.++..+++
T Consensus      1409 gD~~~es~~rf~~~~~~~~~~dl~e~sdye~~~i~~f~is~~~~~~~~Iag~~l~~~~vm~~~~vVipt~dt~~~~~f~n 1488 (3164)
T COG5245        1409 GDKCRESTPRFYLISDGDLIKDLNERSDYEEMLIMMFNISAVITNNGSIAGFELRGERVMLRKEVVIPTSDTGFVDSFSN 1488 (3164)
T ss_pred             cCcccccchhHHHhhhhhhhhccchhhhhHHHHHhhcccceEeecccccCCceechhhhcccCCeecccccchhHHHHHH
Confidence                   00                            0                    0 01367999999999999999


Q ss_pred             HHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeeccccccChhHHHHHHHHHhhhhcc-C---CCCCCCCceEE
Q psy4730         724 LYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRK-G---VYGPAMGKKYI  799 (1513)
Q Consensus       724 ~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t~~~~~q~~i~~~~~~~~~-~---~~~~~~~~~~~  799 (1513)
                      -++..++.+++|||||+|||+++...+++...  +....+|||-.|+.......++...+.-+. |   .|-.+.-|.+|
T Consensus      1489 ~~lnt~R~~i~cGppGSgK~mlM~~sLrs~~~--~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lV 1566 (3164)
T COG5245        1489 EALNTLRSYIYCGPPGSGKEMLMCPSLRSELI--TEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLV 1566 (3164)
T ss_pred             HHHhccceEEEECCCCCccchhcchhhhhhhh--eeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheE
Confidence            99999999999999999999999988876432  566789999999888777777654433221 1   11111223333


Q ss_pred             EEecccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCcCCCCCChhHHHHHHHHHHhhhcccchhHH
Q psy4730         800 VFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWY  879 (1513)
Q Consensus       800 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  879 (1513)
                                                                                                      
T Consensus      1567 -------------------------------------------------------------------------------- 1566 (3164)
T COG5245        1567 -------------------------------------------------------------------------------- 1566 (3164)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC----CCCCChhhhccc
Q psy4730         880 IEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT----MNTITGRLLRHM  955 (1513)
Q Consensus       880 ~~~~~~~~~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~----~~~~~~r~~~~f  955 (1513)
                               +|+|++|||..++||+|.++-+||+++++.|||.+-..+|+.|.++.++|||||+    |++.+.||+||=
T Consensus      1567 ---------LFcDeInLp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~ 1637 (3164)
T COG5245        1567 ---------LFCDEINLPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKP 1637 (3164)
T ss_pred             ---------EEeeccCCccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCc
Confidence                     4569999999999999999999999999999999999999999999999999997    899999999999


Q ss_pred             eEeecCCCChHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccccchhhHHHHHhhhcc
Q psy4730         956 NIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIMGLTQ 1035 (1513)
Q Consensus       956 ~~~~~~~~~~~~l~~i~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hy~fnlrd~~~~~~g~~~ 1035 (1513)
                      .++++.+|+.++|.+||..+|.+.+..  .++.+.+...++.|++++|..+..+..- --+.||.|.+|||+||..|+.-
T Consensus      1638 v~vf~~ype~~SL~~Iyea~l~~s~l~--~~ef~~~se~~~~aSv~ly~~~k~~~k~-~lq~~y~y~pReLtR~lr~i~~ 1714 (3164)
T COG5245        1638 VFVFCCYPELASLRNIYEAVLMGSYLC--FDEFNRLSEETMSASVELYLSSKDKTKF-FLQMNYGYKPRELTRSLRAIFG 1714 (3164)
T ss_pred             eEEEecCcchhhHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHhhhh-hcccccccChHHHHHHHHHHHh
Confidence            999999999999999999988766532  3567789999999999999988776543 4678999999999999999998


Q ss_pred             cCCcccC-ChhhHHHhhhhhHHHHHhhhcCChhhHHHHHHHHHHHHHhhhhhhHHHHhhccccCcccchhhcccceeccc
Q psy4730        1036 LPASHCK-APDKMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKTISADDLRSLFFGNF 1114 (1513)
Q Consensus      1036 ~~~~~~~-~~~~~~rl~~hE~~rvf~drl~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~f 1114 (1513)
                      +..+... +..+++++|+||++|+|.|||+...++.|+.+.+.+...++++.-                           
T Consensus      1715 yaeT~~~t~~~slI~~wy~ea~r~~~dRLV~qkE~st~~q~ly~~~~~~~~e~--------------------------- 1767 (3164)
T COG5245        1715 YAETRIDTPDVSLIIDWYCEAIREKIDRLVQQKESSTSRQDLYDFGLRAIREM--------------------------- 1767 (3164)
T ss_pred             HHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhhh---------------------------
Confidence            8777776 466999999999999999999999999998766665444333210                           


Q ss_pred             cccccccCCccccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccccceEEecCceEEEEEecCCCCCCCCCchhHH
Q psy4730        1115 LGNTIIFPGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPGYAGRTELPDNLK 1194 (1513)
Q Consensus      1115 v~~~~~~~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g~~i~~~p~~~iFiTmNp~y~gr~~LP~nLk 1194 (1513)
                                             .+                                          |-.|-        
T Consensus      1768 -----------------------~~------------------------------------------g~i~e-------- 1774 (3164)
T COG5245        1768 -----------------------IA------------------------------------------GHIGE-------- 1774 (3164)
T ss_pred             -----------------------hh------------------------------------------cccch--------
Confidence                                   00                                          00000        


Q ss_pred             hhhhcccccCCChHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhhccCCCCCCcchhhHHHHHHHhhhhhhhCCCChHH
Q psy4730        1195 VLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAGSLKIKYPEKDEF 1274 (1513)
Q Consensus      1195 ~lFR~v~~~~PD~~~I~ei~L~~~GF~~a~~la~ki~~~~~l~~~~ls~q~~yd~glR~lk~vl~~a~~l~~~~~~~~E~ 1274 (1513)
                                   ..|.-.+++..||                               .                      
T Consensus      1775 -------------~~I~fS~Il~~g~-------------------------------~---------------------- 1788 (3164)
T COG5245        1775 -------------AEITFSMILFFGM-------------------------------A---------------------- 1788 (3164)
T ss_pred             -------------hhhhHHHHHhccH-------------------------------H----------------------
Confidence                         0111122222222                               1                      


Q ss_pred             HHHHHHHHhhcCCCCcccchhhHHHHhhccCCCCCCCCCCchHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHhc-ce
Q psy4730        1275 VIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILVR-HG 1353 (1513)
Q Consensus      1275 ~~l~~ai~~~~~pkl~~~d~~lf~~li~~~Fp~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~k~~qL~~~~~~~-~g 1353 (1513)
                                   .+...|...|-+-....|..-.+.                 ..+...+..+..++...+.+.+- .-
T Consensus      1789 -------------~l~k~dl~~fvEe~~K~F~sshl~-----------------v~~V~~~~~l~HiLr~~R~l~~vggh 1838 (3164)
T COG5245        1789 -------------CLLKKDLAVFVEEVRKIFGSSHLD-----------------VEAVAYKDALLHILRSRRGLLVVGGH 1838 (3164)
T ss_pred             -------------HHhhhhHHHHHHHHHHHhcccCCC-----------------CceeeeHHHHHHHHHHHHHHHHhccc
Confidence                         112222333333333334321110                 11222334444554554443322 23


Q ss_pred             EEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhccC
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVST 1433 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~~~ 1433 (1513)
                      -|+.|..|.||+.+.+..+ -                     +||  .++-|++|.-+..+++|.|.+...++|...  .
T Consensus      1839 ~~l~g~~~~g~~~~~efvc-w---------------------lN~--~~m~e~~~hr~~~~~Df~d~lk~~~~~~~~--~ 1892 (3164)
T COG5245        1839 GVLKGVLIRGACDAREFVC-W---------------------LNP--RNMREIFGHRDELTGDFRDSLKVQDLRRNI--H 1892 (3164)
T ss_pred             hhhhhhhhhhhHHHHHHHH-H---------------------hCc--cchhhhhcccccchhhHHHHHHHHHHhccc--c
Confidence            3455666666665555443 1                     233  456789999999999999999998888653  2


Q ss_pred             CCCceEEEEcC-CCChHHHHhhhcccCCCCceeecCC-CeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeCC
Q psy4730        1434 TPDRKWIMFDG-PIDAVWIENMNTVLDDNKKLCLING-EIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1434 ~~~~~WivfDG-~~d~~wiE~LNsvLDdn~~L~L~nG-e~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
                      .....|+|+|| |+.|.|+|.||.+||.|+.+||-+| |++++|.|.|.+||.+.|...||||+.|.-|+|+..+
T Consensus      1893 ~~r~Cl~I~Esi~~es~fLe~~N~LL~n~~~~~lf~gne~~~I~~nlr~~~es~~L~~dTe~tlt~vFl~~~~~N 1967 (3164)
T COG5245        1893 GGRECLFIFESIPVESSFLEDFNPLLDNNRFLCLFSGNERIRIPENLRFVFESTSLEKDTEATLTRVFLVYMEEN 1967 (3164)
T ss_pred             CCceEEEEecCCccchHHHHHhhhhhhccccchhccchhHHHHHHHHHhhhhccccccCCHHHHHHHHHHHHHhc
Confidence            45669999999 9999999999999999999999999 8999999999999999999999999999888876543

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=100.00  E-value=5.5e-51  Score=497.36  Aligned_cols=715  Identities=20%  Similarity=0.242  Sum_probs=481.5

Q ss_pred             eeecccchHHHHHHHHHHHhhcCCCCCCCCCCCCccchHHHHHHhcCEEEEEEcCCCCC-------CCCC----------
Q psy4730         640 LVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPT-------FPPN----------  702 (1513)
Q Consensus       640 lV~Tplt~r~~~~l~~al~~~~g~~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~~~-------f~~~----------  702 (1513)
                      +..|..+.+....++-++.++.+..+.|.+|||||++++.||.++|..+.|+|-+++++       ++|.          
T Consensus       444 fAfTs~sl~lleql~~~Iq~nep~LLVGeTGtGKTT~IQ~La~~l~~kltvin~sqqte~sd~lgGykpIn~~tl~lpl~  523 (4600)
T COG5271         444 FAFTSCSLWLLEQLLWNIQNNEPTLLVGETGTGKTTMIQYLALKLHFKLTVINKSQQTEMSDDLGGYKPINGSTLGLPLH  523 (4600)
T ss_pred             eeehhhHHHHHHHHHHHhccCCceEEEecCCCchhhHHHHHHHHhhhhheehhhhhhccchhhcCCcccCCCcccccchH
Confidence            56788888888899999999999999999999999999999999999999999998876       4443          


Q ss_pred             CCCccccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhc-cCcCcccceeeccccccChhHHHHHHH--
Q psy4730         703 LRPSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLN-LSKDKYLPNIINFSARTSSNITQEMIM--  779 (1513)
Q Consensus       703 ~~~~~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~-~~~~~~~~~~~~fs~~t~~~~~q~~i~--  779 (1513)
                      .+|.++|-.|........++...-....|       -|=|+..-.-..++ +.+......    .....+..-|..+.  
T Consensus       524 e~f~~if~~Tfs~kKn~kfi~m~~r~~~~-------~~wkn~~Klw~ea~kis~~~ldgq----~~~~n~qkrqkrl~~q  592 (4600)
T COG5271         524 ERFIDIFEGTFSMKKNIKFICMEQRVSVP-------VCWKNKEKLWWEANKISSKALDGQ----QPLPNPQKRQKRLSNQ  592 (4600)
T ss_pred             HHHHHHHHhhcchhhhHHHHHhHHhhccc-------hhhhhHHHHHHHHHHHHHHhccCC----CCCCChHHHhhhhhhH
Confidence            23444454554444444444443222222       23333322211111 100000000    00001111111111  


Q ss_pred             ----------HHhhhhccCCCCCCCCceEEEEecccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCC
Q psy4730         780 ----------AKLDRRRKGVYGPAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPG  849 (1513)
Q Consensus       780 ----------~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  849 (1513)
                                ++..||--+......++-.++|+.             |++++++++|.                      
T Consensus       593 ~~l~nqwadfe~~vk~fe~~l~~~en~f~F~fve-------------G~Lvk~~r~Ge----------------------  637 (4600)
T COG5271         593 VELRNQWADFEAVVKRFEGLLKLLENRFHFVFVE-------------GILVKCMRNGE----------------------  637 (4600)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhhcccceEEEEeh-------------hhHHHHHhcCc----------------------
Confidence                      111122222333345566788884             56688888888                      


Q ss_pred             cCCCCCChhHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhccCCCCCccCCCCChHHHHHHHHhcC----CccccCC
Q psy4730         850 IELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHK----HLYDFQT  925 (1513)
Q Consensus       850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~----~~yd~~~  925 (1513)
                                                            |+++|++|+++.+      +||++-+++...    .+|+.++
T Consensus       638 --------------------------------------WlLLDEINLas~e------TLe~I~~lL~~~es~ilLsE~GD  673 (4600)
T COG5271         638 --------------------------------------WLLLDEINLASEE------TLELIDGLLGKKESGILLSESGD  673 (4600)
T ss_pred             --------------------------------------eEEeeccccccHH------HHHHHHhhhcCcccceeeeccCC
Confidence                                                  7889999999977      899999999853    3479999


Q ss_pred             ceeeeec-ceEEEEeecCC----CCCCChhhhccceEeecCCCChH--HHHHHHHHHhhhhh------------------
Q psy4730         926 VTRVDLV-DIIYITAMIPT----MNTITGRLLRHMNIISIDSFNEA--TLSKIFTSVLDWHF------------------  980 (1513)
Q Consensus       926 ~~~~~~~-~~~~~~a~~~~----~~~~~~r~~~~f~~~~~~~~~~~--~l~~i~~~~l~~~~------------------  980 (1513)
                      .+.+.+| +++++|||||.    ++++++.|+.||+.+|+-+|++.  +|..|+..++..+-                  
T Consensus       674 ~~Pi~~Hp~FrlFgCMNP~tDvGKr~le~~~rsrFteIyVhsp~~~l~DllsII~kyig~y~Is~E~v~~~IaElyleaK  753 (4600)
T COG5271         674 LRPIRIHPGFRLFGCMNPGTDVGKRKLEGSFRSRFTEIYVHSPSTSLKDLLSIIHKYIGRYEISEERVSRKIAELYLEAK  753 (4600)
T ss_pred             ccccccCCCceEEeecCCCcccccccCCcccccceeEEEEeCccccHHHHHHHHHHHHhheecchHHHhHHHHHHHHHHH
Confidence            9999999 99999999997    78999999999999999999987  77777777653311                  


Q ss_pred             -----------------------------------------------hccchhHHHHHHHHHHHHHHHH-----HHh---
Q psy4730         981 -----------------------------------------------SKGFADSIVKLSKNIVAATFHV-----YSE--- 1005 (1513)
Q Consensus       981 -----------------------------------------------~~~f~~~~~~~~~~~~~~~~~~-----~~~--- 1005 (1513)
                                                                     |-+|-.-....+++|.-..+..     .+.   
T Consensus       754 slsl~~~lvdga~q~Ph~s~RTL~RtL~yVt~i~~iyglrrSlYegFcmsflTlLD~~Sesil~~~~~kftlg~l~~~~a  833 (4600)
T COG5271         754 SLSLGKELVDGAVQEPHVSGRTLVRTLNYVTNIGEIYGLRRSLYEGFCMSFLTLLDFVSESILVSLLSKFTLGLLESQNA  833 (4600)
T ss_pred             HhccCCeeccCcCCCcccchHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccccchh
Confidence                                                           1111111111122222221111     112   


Q ss_pred             hhhccCCCC--------------------CCCccccchh------hHHH---------HHhhhcccCCcccC------Ch
Q psy4730        1006 STKVFLPIP--------------------SKSHYVFNLR------DFAK---------VIMGLTQLPASHCK------AP 1044 (1513)
Q Consensus      1006 ~~~~~~~~~--------------------~~~hy~fnlr------d~~~---------~~~g~~~~~~~~~~------~~ 1044 (1513)
                      +.+..+|.|                    .+.||+.+++      .+.|         .+||+++++|+++.      |+
T Consensus       834 i~kq~p~~p~~~yi~f~hyw~~~g~~~veeq~hyIiTPfVqkn~ln~~Ra~s~~~fP~LiQGpTSSGKTSMI~yla~~tg  913 (4600)
T COG5271         834 IEKQKPKVPDHSYIAFCHYWKHGGSFPVEEQEHYIITPFVQKNYLNTMRAASLSNFPLLIQGPTSSGKTSMILYLARETG  913 (4600)
T ss_pred             hhhcCCCCCCccHHHHHHHHHhcCCCchhhcceeEecHHHHHHHHHHHHHHhhcCCcEEEecCCCCCcchHHHHHHHHhC
Confidence            112222222                    3568988664      2223         37999999999984      99


Q ss_pred             hhHHHhhhhhHHHHHhhhcCChhhHHHHHHHHHHHHHhhhhhhHHHHhhccccCcccchhhcccceeccccccccccCCc
Q psy4730        1045 DKMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKTISADDLRSLFFGNFLGNTIIFPGA 1124 (1513)
Q Consensus      1045 ~~~~rl~~hE~~rvf~drl~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~fv~~~~~~~G~ 1124 (1513)
                      ++|||+++||                              |++.++|++.+.++.      -+++-|..-+--+|++.|.
T Consensus       914 hkfVRINNHE------------------------------HTdlqeYiGTyvTdd------~G~lsFkEGvLVeAlR~Gy  957 (4600)
T COG5271         914 HKFVRINNHE------------------------------HTDLQEYIGTYVTDD------DGSLSFKEGVLVEALRRGY  957 (4600)
T ss_pred             ccEEEecCcc------------------------------cchHHHHhhceeecC------CCceeeehhHHHHHHhcCc
Confidence            9999999999                              999999998876433      2556677777778999999


Q ss_pred             cccccccchhhHhHHHHHHHHHHHHHHHHHhhcccccccc-ceEEecCceEEEEEecC--CCCCCCCCchhHHhhhhccc
Q psy4730        1125 WACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEG-TEISLNPTSMIFITMNP--GYAGRTELPDNLKVLFRSVA 1201 (1513)
Q Consensus      1125 W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g-~~i~~~p~~~iFiTmNp--~y~gr~~LP~nLk~lFR~v~ 1201 (1513)
                      |+.+||.|.+|.+||.++       ++.+..++..+..|. +.+..||+|++|+|.||  +|+||+-|..++|++|-+++
T Consensus       958 WIVLDELNLApTDVLEaL-------NRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE~h 1030 (4600)
T COG5271         958 WIVLDELNLAPTDVLEAL-------NRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLEMH 1030 (4600)
T ss_pred             EEEeeccccCcHHHHHHH-------HHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHhhh
Confidence            999999999999999555       889999999999997 56789999999999998  59999999999999999999


Q ss_pred             cc-CCChHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhhccCCC--CCCcchhhHHHHHHHhhhhhhhCCCChHHHHHH
Q psy4730        1202 MM-VPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQS--HYDYGMRAVKSVLNAAGSLKIKYPEKDEFVIVL 1278 (1513)
Q Consensus      1202 ~~-~PD~~~I~ei~L~~~GF~~a~~la~ki~~~~~l~~~~ls~q~--~yd~glR~lk~vl~~a~~l~~~~~~~~E~~~l~ 1278 (1513)
                      +. .|.-.  .|.+| ..|.+-|++.|+|||.+|+.++-.=|...  .-.-++.+++.+.++|++..-.+....+..+++
T Consensus      1031 FddipedE--le~IL-h~rc~iapSyakKiVeVyr~Ls~rRs~~rifeqknsfaTLRDLFrWa~R~avgy~qla~~Gyml 1107 (4600)
T COG5271        1031 FDDIPEDE--LEEIL-HGRCEIAPSYAKKIVEVYRGLSSRRSINRIFEQKNSFATLRDLFRWAGRIAVGYDQLAFLGYML 1107 (4600)
T ss_pred             cccCcHHH--HHHHH-hccCccCHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHhccccchHHHHHHhhHHH
Confidence            86 44433  23444 47899999999999999996643222111  112356778888889886544333333344444


Q ss_pred             HHHHhhcCCCCcccchhhHHHHhhccCCCCCCCCCCchHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHhcceEEEec
Q psy4730        1279 RAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILVRHGLMVVG 1358 (1513)
Q Consensus      1279 ~ai~~~~~pkl~~~d~~lf~~li~~~Fp~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~k~~qL~~~~~~~~gvilvG 1358 (1513)
                      .|-|..     ..+|.--..+.+..+|........-++.++..--+++  .....+..++.--.-...|+.+..+|+|||
T Consensus      1108 laER~R-----~~~dkv~V~~v~ekvmkvk~d~d~~y~smed~slkel--~~v~wt~~m~rl~~lv~~Cl~~kepvlLVg 1180 (4600)
T COG5271        1108 LAERQR-----ELEDKVRVGQVFEKVMKVKSDEDYKYDSMEDISLKEL--SKVVWTEPMCRLERLVGKCLVTKEPVLLVG 1180 (4600)
T ss_pred             HHHHhc-----CHHhhhhHHHHHHHHHhhhhcchhhhhhHhhhhHHhh--hhcccccchhhhhhHHHHhhcccCceEEEe
Confidence            444332     2234334444455555321111112233332222221  223345555555556777889999999999


Q ss_pred             cCCCCchHHHHHHHHHHHhH----hhhhcccccc-----ccee----------------EEEecCCCCChhhccccccCC
Q psy4730        1359 ESFGGKTTAYQTLADSLTDI----AAKKSATMKE-----FKTG----------------YKIINPKSITMGQLYGEFDSA 1413 (1513)
Q Consensus      1359 ~tgsGKTt~~~~L~~~~~~l----~~~~~~~~~~-----~~~~----------------~~~inp~~~t~~eL~G~~~~~ 1413 (1513)
                      +|||||||.+++||..+++.    ++...+..+.     .+|.                ..+-+..-+++.|++-.+.+.
T Consensus      1181 etgcgktt~cqvLa~~~~rel~~~nahq~Te~gdiigaqrPVrnrse~~y~l~k~l~~a~nV~~~~didL~e~~~~~ssS 1260 (4600)
T COG5271        1181 ETGCGKTTGCQVLADTFRRELNLMNAHQETENGDIIGAQRPVRNRSETGYGLTKALDIASNVFKTRDIDLIEMHRGISSS 1260 (4600)
T ss_pred             ecCcchhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhhhhhhHHHHHHHHHhhhhhhcchHHHHHhhhccc
Confidence            99999999999999998873    2222221110     1111                112333445565666555443


Q ss_pred             C------------------CCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecC-C---
Q psy4730        1414 S------------------HEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLIN-G--- 1469 (1513)
Q Consensus      1414 t------------------~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~n-G--- 1469 (1513)
                      .                  .+|+||.|.++||.+        ..+++|  ...|.+++|+|||||+..|+|+|.. |   
T Consensus      1261 dn~nls~~~e~~I~k~r~lfeW~DGpLV~AMk~G--------dfFLlDEIsLAdDSVLERLNSVLE~~RtL~l~E~g~a~ 1332 (4600)
T COG5271        1261 DNDNLSFIGESFIFKNRKLFEWKDGPLVKAMKCG--------DFFLLDEISLADDSVLERLNSVLESQRTLYLTETGNAA 1332 (4600)
T ss_pred             ccccHHHHHHHHHHHhhhheeeccchHHHHHhcC--------CeeEeeeccccchHHHHHHHHhhcccceEEEeecCCcc
Confidence            3                  379999999999999        899999  5679999999999999999999986 5   


Q ss_pred             CeeecCCCCeEEEeecCC------CCCCcchhhccEEEEeeCC
Q psy4730        1470 EIIKMSNTMNLIFECENL------EFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1470 e~i~~~~~~~~iFE~~~l------~~asPatvsRcg~v~~~~~ 1506 (1513)
                      +.+..+++++| |.|.|-      +-.|||.-.|..=||+++.
T Consensus      1333 ~~vtA~dgF~f-fATMNPGGDyGKkELSPALRNRFTEiwvp~m 1374 (4600)
T COG5271        1333 EEVTAHDGFRF-FATMNPGGDYGKKELSPALRNRFTEIWVPVM 1374 (4600)
T ss_pred             ceeeeccCceE-EEeeCCCCccchhhCCHHHhcccceEeeccc
Confidence            77888888776 556554      4589999999999998764

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=100.00  E-value=5e-41  Score=410.94  Aligned_cols=629  Identities=18%  Similarity=0.240  Sum_probs=425.0

Q ss_pred             ccceeecccchHHHHHHHHHHHh-hcCCCCCCCCCCCCccchHHHHHHhcCEEEEEEcCCCCCCCCCCCCccccccchhh
Q psy4730         637 SDRLVITPLTDRCYRTLMSALKL-HLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPTFPPNLRPSDLIIPTNVT  715 (1513)
Q Consensus       637 ~~rlV~Tplt~r~~~~l~~al~~-~~g~~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~~~f~~~~~~~~~~v~t~~~  715 (1513)
                      ....|+||..++-|+.+++|-+. .++-.++||+++|||++++.||+..|+.++.+|-++.++.                
T Consensus       864 q~hyIiTPfVqkn~ln~~Ra~s~~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdl----------------  927 (4600)
T COG5271         864 QEHYIITPFVQKNYLNTMRAASLSNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDL----------------  927 (4600)
T ss_pred             cceeEecHHHHHHHHHHHHHHhhcCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchH----------------
Confidence            45689999999999999887665 4555668999999999999999999999999999999880                


Q ss_pred             hhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeeccccccChhHHHHHHHHHhhhhccCCCCCCCC
Q psy4730         716 CMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYGPAMG  795 (1513)
Q Consensus       716 ~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t~~~~~q~~i~~~~~~~~~~~~~~~~~  795 (1513)
                                                     |.         |+                            |.|.. ..
T Consensus       928 -------------------------------qe---------Yi----------------------------GTyvT-dd  938 (4600)
T COG5271         928 -------------------------------QE---------YI----------------------------GTYVT-DD  938 (4600)
T ss_pred             -------------------------------HH---------Hh----------------------------hceee-cC
Confidence                                           10         11                            11111 11


Q ss_pred             ceEEEEecccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCcCCCCCChhHHHHHHHHHHhhhcccc
Q psy4730         796 KKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQA  875 (1513)
Q Consensus       796 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  875 (1513)
                      ...+.|             +.|+++.|++.|.                                                
T Consensus       939 ~G~lsF-------------kEGvLVeAlR~Gy------------------------------------------------  957 (4600)
T COG5271         939 DGSLSF-------------KEGVLVEALRRGY------------------------------------------------  957 (4600)
T ss_pred             CCceee-------------ehhHHHHHHhcCc------------------------------------------------
Confidence            111223             2456777777776                                                


Q ss_pred             hhHHHHHHHHHHHHHhhccCCCCCccCCCCChHHHHHHHHhc-CCccccCCceeeeec-ceEEEEeecCC-----CCCCC
Q psy4730         876 TDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDH-KHLYDFQTVTRVDLV-DIIYITAMIPT-----MNTIT  948 (1513)
Q Consensus       876 ~~~~~~~~~~~~~~~~dd~n~p~~~~~~~q~~le~lr~~~~~-~~~yd~~~~~~~~~~-~~~~~~a~~~~-----~~~~~  948 (1513)
                                  |+.+|++|++..|      +||-|..|+|. ..+|-|+..+.+.-| |+.++|+.|||     |+.++
T Consensus       958 ------------WIVLDELNLApTD------VLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LS 1019 (4600)
T COG5271         958 ------------WIVLDELNLAPTD------VLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLS 1019 (4600)
T ss_pred             ------------EEEeeccccCcHH------HHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHH
Confidence                        7778999999988      99999999996 589999999999999 99999999998     89999


Q ss_pred             hhhhccceEeecCCCChHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhhccC--CCCCCCccccchhhH
Q psy4730         949 GRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFL--PIPSKSHYVFNLRDF 1026 (1513)
Q Consensus       949 ~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~hy~fnlrd~ 1026 (1513)
                      ..|++||-.++.+....+.|..|...-     |        +++.+-....++||+++..+--  +.=.+-.-.-+|||+
T Consensus      1020 rAFRNRFlE~hFddipedEle~ILh~r-----c--------~iapSyakKiVeVyr~Ls~rRs~~rifeqknsfaTLRDL 1086 (4600)
T COG5271        1020 RAFRNRFLEMHFDDIPEDELEEILHGR-----C--------EIAPSYAKKIVEVYRGLSSRRSINRIFEQKNSFATLRDL 1086 (4600)
T ss_pred             HHHHhhhHhhhcccCcHHHHHHHHhcc-----C--------ccCHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHH
Confidence            999999999999999999998887652     2        2344555566677777543211  000111122379999


Q ss_pred             HHHHhhhcccCCcccCChhhHHHhhhhhHHHHHhhhcCChhhHHHHHHHHHHHHHhhhhhhHHH------HhhccccCcc
Q psy4730        1027 AKVIMGLTQLPASHCKAPDKMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGTKMDE------FLKNKITDKT 1100 (1513)
Q Consensus      1027 ~~~~~g~~~~~~~~~~~~~~~~rl~~hE~~rvf~drl~~~~d~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 1100 (1513)
                      +||.--....-.+.+..           .+-..+.|-.+.+||-.+.+.+.++.+-...++..+      .++. + .+-
T Consensus      1087 FrWa~R~avgy~qla~~-----------GymllaER~R~~~dkv~V~~v~ekvmkvk~d~d~~y~smed~slke-l-~~v 1153 (4600)
T COG5271        1087 FRWAGRIAVGYDQLAFL-----------GYMLLAERQRELEDKVRVGQVFEKVMKVKSDEDYKYDSMEDISLKE-L-SKV 1153 (4600)
T ss_pred             HHHhccccchHHHHHHh-----------hHHHHHHHhcCHHhhhhHHHHHHHHHhhhhcchhhhhhHhhhhHHh-h-hhc
Confidence            99963222111111111           233557788888888888877777766543322111      0000 0 000


Q ss_pred             cchhhcccc--------------------------------------e--------------------------------
Q psy4730        1101 ISADDLRSL--------------------------------------F-------------------------------- 1110 (1513)
Q Consensus      1101 ~~~~~~~~l--------------------------------------~-------------------------------- 1110 (1513)
                      +|+..++++                                      +                                
T Consensus      1154 ~wt~~m~rl~~lv~~Cl~~kepvlLVgetgcgktt~cqvLa~~~~rel~~~nahq~Te~gdiigaqrPVrnrse~~y~l~ 1233 (4600)
T COG5271        1154 VWTEPMCRLERLVGKCLVTKEPVLLVGETGCGKTTGCQVLADTFRRELNLMNAHQETENGDIIGAQRPVRNRSETGYGLT 1233 (4600)
T ss_pred             ccccchhhhhhHHHHhhcccCceEEEeecCcchhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhhhhhhHH
Confidence            111100000                                      0                                


Q ss_pred             ------------------------------------------------eccccccccccCCccccccccchhhHhHHHHH
Q psy4730        1111 ------------------------------------------------FGNFLGNTIIFPGAWACFDEFNRIELEVLSVV 1142 (1513)
Q Consensus      1111 ------------------------------------------------f~~fv~~~~~~~G~W~~~de~n~l~~~vLs~v 1142 (1513)
                                                                      +.|-.--.||++|....+||++.++..||   
T Consensus      1234 k~l~~a~nV~~~~didL~e~~~~~ssSdn~nls~~~e~~I~k~r~lfeW~DGpLV~AMk~GdfFLlDEIsLAdDSVL--- 1310 (4600)
T COG5271        1234 KALDIASNVFKTRDIDLIEMHRGISSSDNDNLSFIGESFIFKNRKLFEWKDGPLVKAMKCGDFFLLDEISLADDSVL--- 1310 (4600)
T ss_pred             HHHHHHHhhhhhhcchHHHHHhhhcccccccHHHHHHHHHHHhhhheeeccchHHHHHhcCCeeEeeeccccchHHH---
Confidence                                                            00000012899999999999999999998   


Q ss_pred             HHHHHHHHHHHHhhccccccc-c---ceEEecCceEEEEEecCC-CCCCCCCchhHHhhhhccccc----CCChHHHHHH
Q psy4730        1143 AQQVQSIQLATIAKLKKFMFE-G---TEISLNPTSMIFITMNPG-YAGRTELPDNLKVLFRSVAMM----VPDYAMIGEI 1213 (1513)
Q Consensus      1143 ~~~i~~i~~~l~~~~~~~~~~-g---~~i~~~p~~~iFiTmNp~-y~gr~~LP~nLk~lFR~v~~~----~PD~~~I~ei 1213 (1513)
                          .+++.++...+....-| |   ..+.+|.+|++|+||||| .-|+++|.++||++|.++.+-    ..|+..|+++
T Consensus      1311 ----ERLNSVLE~~RtL~l~E~g~a~~~vtA~dgF~ffATMNPGGDyGKkELSPALRNRFTEiwvp~m~D~~d~~~iv~~ 1386 (4600)
T COG5271        1311 ----ERLNSVLESQRTLYLTETGNAAEEVTAHDGFRFFATMNPGGDYGKKELSPALRNRFTEIWVPVMSDEADLIFIVLV 1386 (4600)
T ss_pred             ----HHHHHhhcccceEEEeecCCccceeeeccCceEEEeeCCCCccchhhCCHHHhcccceEeecccccccchhhhhhh
Confidence                56677777777776666 5   789999999999999995 678899999999999998764    3455666666


Q ss_pred             HHHhcCccchHHHHHHHHHHHHHHHhhccCCCCCC--cchhhHHHHHHHhhhhhhhCCCChHHHHHHHHHHhhcCCC---
Q psy4730        1214 SLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYD--YGMRAVKSVLNAAGSLKIKYPEKDEFVIVLRAIIDVNMPK--- 1288 (1513)
Q Consensus      1214 ~L~~~GF~~a~~la~ki~~~~~l~~~~ls~q~~yd--~glR~lk~vl~~a~~l~~~~~~~~E~~~l~~ai~~~~~pk--- 1288 (1513)
                      -|. .   +-..||+.++.+++...+.+    .|.  .++|.+-.+.....+.+.    .+-..++++|...+++..   
T Consensus      1387 ~l~-~---~~vdla~p~ve~~kw~a~~l----~~~~vISiRd~l~~VEFIn~~~i----~d~~~~l~~~~smvfidalG~ 1454 (4600)
T COG5271        1387 DLR-F---GEVDLAKPSVETFKWLARSL----LYNDVISIRDLLLIVEFINRREI----LDLNLVLFNAVSMVFIDALGE 1454 (4600)
T ss_pred             hhh-c---CcccccchHHHHHHHHHHHh----hccCceeHHHHHHHHHHHHHHHh----hhhhhHhhhhhhHHHHHHhcc
Confidence            653 2   34679999999999765554    232  445544443322211110    011112222211111111   


Q ss_pred             --------------------------CcccchhhHHHH-h------hccCCC-CCCCCCCchHHHHHHHHHHHHcCcccc
Q psy4730        1289 --------------------------FLVQDLPLFIGI-Y------KDLFPG-IELPPTDRDELIEQIKINLAKRNAQAT 1334 (1513)
Q Consensus      1289 --------------------------l~~~d~~lf~~l-i------~~~Fp~-~~~~~~~~~~l~~~i~~~~~~~~l~~~ 1334 (1513)
                                                |-..++..-..- .      ..+|.| +..|..+...-.       ..-.+. +
T Consensus      1455 fst~~laen~~dl~s~r~~c~v~l~~L~g~~i~~~~~~~n~i~f~d~~~f~g~f~iP~~~~~~S~-------Ssf~l~-s 1526 (4600)
T COG5271        1455 FSTVALAENGLDLESERQRCFVWLEALEGAGIKGIEADVNAIYFEDERMFGGDFVIPYLVEHHSS-------SSFDLE-S 1526 (4600)
T ss_pred             cchhHHhhcccchhHHHHHHHHHHHHhccCCceeeecccceeEecccceeccccccccccccccC-------cccccc-C
Confidence                                      111111111000 0      111111 011111100000       001111 2


Q ss_pred             HHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC-hhhccccccCC
Q psy4730        1335 DWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-MGQLYGEFDSA 1413 (1513)
Q Consensus      1335 ~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t-~~eL~G~~~~~ 1413 (1513)
                      |.-......+.+++++..|+||.|.||.|||+++.+||+.++              .++.+||-...| +-+|||+.-|.
T Consensus      1527 pTT~~Nl~rVlRAmqv~kpilLEGsPGVGKTSlItaLAr~tG--------------~kliRINLSeQTdL~DLfGsd~Pv 1592 (4600)
T COG5271        1527 PTTTVNLRRVLRAMQVGKPILLEGSPGVGKTSLITALARKTG--------------KKLIRINLSEQTDLCDLFGSDLPV 1592 (4600)
T ss_pred             CchHHhHHHHHHHHhcCCceeecCCCCccHHHHHHHHHHHhc--------------CceEEeeccccchHHHHhCCCCCc
Confidence            344456667788999999999999999999999999998887              467999999988 99999999998


Q ss_pred             CC--C--CccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCe-eecCCCCeEEEeecC
Q psy4730        1414 SH--E--WRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEI-IKMSNTMNLIFECEN 1486 (1513)
Q Consensus      1414 t~--e--W~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~-i~~~~~~~~iFE~~~ 1486 (1513)
                      .+  +  |.|..|..+||++        .|+++|  +.+..+++|.||++||+.+...+|.=+. ...+||++ +|.++|
T Consensus      1593 e~~Gef~w~dapfL~amr~G--------~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~Hpnfr-VFAaqN 1663 (4600)
T COG5271        1593 EEGGEFRWMDAPFLHAMRDG--------GWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFR-VFAAQN 1663 (4600)
T ss_pred             ccCceeEecccHHHHHhhcC--------CEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCee-eeeecC
Confidence            73  3  9999999999999        999999  5678899999999999999999999665 78888865 677877


Q ss_pred             CC-------CCCcchhhccEEEEeeC
Q psy4730        1487 LE-------FASPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1487 l~-------~asPatvsRcg~v~~~~ 1505 (1513)
                      -.       ....+.+.|.++||+|.
T Consensus      1664 Pq~qggGRKgLPkSF~nRFsvV~~d~ 1689 (4600)
T COG5271        1664 PQDQGGGRKGLPKSFLNRFSVVKMDG 1689 (4600)
T ss_pred             chhcCCCcccCCHHHhhhhheEEecc
Confidence            63       35669999999999985

>KOG3595|consensus

Probab=100.00  E-value=1.1e-41  Score=463.32  Aligned_cols=387  Identities=33%  Similarity=0.558  Sum_probs=335.5

Q ss_pred             cccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeeccccccChhHHHHHHHHHhhhhc
Q psy4730         707 DLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRR  786 (1513)
Q Consensus       707 ~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t~~~~~q~~i~~~~~~~~  786 (1513)
                      +++|||.++.|+.++++.++..++|+++|||+|+|||++++..+.+........  ++||..|+++.+|.++++++++++
T Consensus       105 ~~~v~t~dt~r~~~~~~~~~~~~k~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~--~~fs~~ts~~~~q~~~~~~~~k~~  182 (1395)
T KOG3595|consen  105 DILVPTIDTVRYDRLLKLLLAHGKPVLLVGPTGTGKTVLVLSELRSLQDREVYL--LNFSSVTSSELLQEIIESKLDKRR  182 (1395)
T ss_pred             ceecCccceeeHHHHHHHHHHhCCeEEEEcCCCCCeeeehHHHHHhcccchheE--EeeeeeccHHHHHHHHHHHHHHhc
Confidence            899999999999999999999999999999999999999999998865533222  999999999999999999999999


Q ss_pred             cCCCCCCCCceEEEEecccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCcCCCCCChhHHHHHHHH
Q psy4730         787 KGVYGPAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKI  866 (1513)
Q Consensus       787 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  866 (1513)
                      ++.|||+.+++.++|+                                                                
T Consensus       183 ~~~~~~~~~~~~~~f~----------------------------------------------------------------  198 (1395)
T KOG3595|consen  183 SGNYGPPLGKKLVLFV----------------------------------------------------------------  198 (1395)
T ss_pred             ccCCCCCCCceeEEEE----------------------------------------------------------------
Confidence            9999999999999997                                                                


Q ss_pred             HHhhhcccchhHHHHHHHHHHHHHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC---
Q psy4730         867 NLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT---  943 (1513)
Q Consensus       867 ~~~~~~~~~~~~~~~~~~~~~~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~---  943 (1513)
                                               ||+|||..|.||+|++++++||+++|+||||+.+.+|+.++|+++++||+||   
T Consensus       199 -------------------------ddinmp~~~~yg~q~~~~~lrq~~e~~g~~~~~~~~~~~i~~i~~~~a~~~~~~g  253 (1395)
T KOG3595|consen  199 -------------------------DDINMPALDKYGDQPPIELLRQMLEHGGFYDRKKSEWVEIENVQLVGAMNPPGGG  253 (1395)
T ss_pred             -------------------------eccCCchhhhcCCccHHHHHHHHHHhceeecccccceeEEeeeEEEeecCCCCCc
Confidence                                     9999999999999999999999999999999999999999999999999987   


Q ss_pred             CCCCChhhhccceEeecCCCChHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccccch
Q psy4730         944 MNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNL 1023 (1513)
Q Consensus       944 ~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hy~fnl 1023 (1513)
                      |+++|+||.|||.+++++.|+.+++.+||+.++.+++.  |.+.......+|+++++.+|..+..+++|+|.++||+||+
T Consensus       254 r~~i~~r~~r~f~~~~~~~~~~~sl~~if~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~hyv~~l  331 (1395)
T KOG3595|consen  254 RNDITERFLRHFLIVSLNYPSQESLTQIFNTILTGHLR--FAPAFRTSIEPIVNASVDFYPKVQENFLPTPSKSHYVFNL  331 (1395)
T ss_pred             cCcccHHHHHHeeeEeeCCCChhhHHHHHHHHHhcccC--ccHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCcceeeech
Confidence            89999999999999999999999999999999999986  7777777799999999999999999999999999999999


Q ss_pred             hhHHHHHhhhcccCCcccCChhhHHHhhhhhHHHHHhhhcCChhhHHHHHHHHHHHHHhhhhhhHHHHhhccccCcccch
Q psy4730        1024 RDFAKVIMGLTQLPASHCKAPDKMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKTISA 1103 (1513)
Q Consensus      1024 rd~~~~~~g~~~~~~~~~~~~~~~~rl~~hE~~rvf~drl~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1103 (1513)
                      ||++||++|++.+.+.+..+...++|+|+||+.|||+||+++.+|++|+.+.+...+...|+...               
T Consensus       332 rd~~r~~~~i~~~~~~~~~~~~~l~~~~~~e~~rv~~drlv~~~~~~~~~~~~~~~~~~~~~~~~---------------  396 (1395)
T KOG3595|consen  332 RDLSRVVQGILLAVSEALLTLEDLIRLWVHEAIRVFADRLVDDEDRQWFDKKLQEVLLKLFEADS---------------  396 (1395)
T ss_pred             hhhhhheeehcccCcHhhccHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHhhhhh---------------
Confidence            99999999999999888889999999999999999999999999999999999999988887643               


Q ss_pred             hhcccceeccccccccccCCccccccccchhhHhHHH-------------------HHHHHHHHHHHHHHhhcccccccc
Q psy4730        1104 DDLRSLFFGNFLGNTIIFPGAWACFDEFNRIELEVLS-------------------VVAQQVQSIQLATIAKLKKFMFEG 1164 (1513)
Q Consensus      1104 ~~~~~l~f~~fv~~~~~~~G~W~~~de~n~l~~~vLs-------------------~v~~~i~~i~~~l~~~~~~~~~~g 1164 (1513)
                       .-++.+||+|.....   +-|.-...+..+...+..                   -...++.++.+.++.+.++....|
T Consensus       397 -~~~~~~~~~~~~~~~---~~y~~~~~~~~l~~~~~~~l~~~~~~~~~~~~lvlf~~~~~h~~ri~ril~~~~g~~llvg  472 (1395)
T KOG3595|consen  397 -LQMPLLYGDFRSESH---KIYEEVLSVELLRGVLEAYLKQFNIEEIRPMHLVLFRDAIEHVLRIDRILRQPRGHALLVG  472 (1395)
T ss_pred             -hcCCceeeecccccc---cccCchHhHHHHHHHHHHHHHHHhhhccCCCceeeeHHHhhhhhhhHHHhcCCCccEEEee
Confidence             225667777776332   233333333333222222                   245677788999998888777665


Q ss_pred             ceE-----------EecCceEEEEEecCCCCCCCCCchhHHhhhhcccccCCC
Q psy4730        1165 TEI-----------SLNPTSMIFITMNPGYAGRTELPDNLKVLFRSVAMMVPD 1206 (1513)
Q Consensus      1165 ~~i-----------~~~p~~~iFiTmNp~y~gr~~LP~nLk~lFR~v~~~~PD 1206 (1513)
                      ...           .+++...+.++.+-+|.+- ++-+.|+.+.|-+......
T Consensus       473 v~g~gkqsl~r~~~~~~~~~~fq~~~~~~y~~~-~~~~dl~~~~r~~g~~~~~  524 (1395)
T KOG3595|consen  473 VGGSGKQSLTRLAAFINGLSVFQIEITRSYNIE-DFREDLKAILRKAGLKNKE  524 (1395)
T ss_pred             cCCCCcccHHHHHHhhccccceeeeccccCcHH-HHHHHHHHHHHHhccCCCc
Confidence            222           2566667788888888764 7888889888887655433

>KOG1808|consensus

Probab=99.94  E-value=3.7e-26  Score=301.66  Aligned_cols=519  Identities=18%  Similarity=0.214  Sum_probs=349.3

Q ss_pred             HHHhhccCCCCCccCCCCChHHHHHHHHhcC--CccccCCceeeeec-ceEEEEeecCC----CCCCChhhhccceEeec
Q psy4730         888 EMILDDLNMPQKETYGAQPAVELLRQIIDHK--HLYDFQTVTRVDLV-DIIYITAMIPT----MNTITGRLLRHMNIISI  960 (1513)
Q Consensus       888 ~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~--~~yd~~~~~~~~~~-~~~~~~a~~~~----~~~~~~r~~~~f~~~~~  960 (1513)
                      |+++|++|+...+      .+|++.++++..  .++++++.+...+| ++.+++||||.    +..+++.++++|+++++
T Consensus       215 w~lldeinla~~~------~l~~i~~vl~~~~i~l~e~~d~~~l~~hp~f~~f~cmnp~td~gK~~l~~~~r~~~te~~v  288 (1856)
T KOG1808|consen  215 WLLLDEINLASAE------TLELISQVLGKCSILLSERGDYTPLKIHPNFRIFACMNPATDVGKRDLKPGKRNRFTEFSV  288 (1856)
T ss_pred             hhhhhhhccchHH------HHHHHHHhccCceeeccccccccccCCCcchhhhhccCccchhhhhhcCcchhcceEEEEE
Confidence            4458999999876      799999999985  56788888888888 99999999996    78999999999999998


Q ss_pred             CCCChHHHH-----------------HHHHHHhhhh----------------------------------------hhc-
Q psy4730         961 DSFNEATLS-----------------KIFTSVLDWH----------------------------------------FSK-  982 (1513)
Q Consensus       961 ~~~~~~~l~-----------------~i~~~~l~~~----------------------------------------~~~-  982 (1513)
                      ..+....-.                 .|-..++...                                        ||- 
T Consensus       289 ~~~~~~~~~~l~~~~~~~~i~~e~v~~~~e~~~~~k~~~~~dg~~~~~~s~r~l~raL~~v~~~~~~~~~~slyE~~~~s  368 (1856)
T KOG1808|consen  289 HTSLEDADLSLSVVDKYIAISSEPVRNIVELYLSAKSLSLVDGNQRPLYSIRTLCRALRIVLDSLPAEVDRSLYEAFCMS  368 (1856)
T ss_pred             echhhhhhhhhhhhccccccchhhHHhHHHHhhhccccccccccccchhhhhhHHHHHHHHHHhhhhhhhcchHHHHHHH
Confidence            877655211                 1111111100                                        000 


Q ss_pred             ---cchhHHHHHHHHHHHHHHHHHHhhhhccCCC---------------CCCCccccch------hhHHHH---------
Q psy4730         983 ---GFADSIVKLSKNIVAATFHVYSESTKVFLPI---------------PSKSHYVFNL------RDFAKV--------- 1029 (1513)
Q Consensus       983 ---~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~hy~fnl------rd~~~~--------- 1029 (1513)
                         .+..+..+....++.+...    ..+..+++               ..+.||++++      +|+.+.         
T Consensus       369 flt~le~~s~~~~~~l~~~~~~----~~~q~P~~~~~~~~~i~~gs~~~~~~~~~i~T~~vq~~la~~~~a~~~~~~pil  444 (1856)
T KOG1808|consen  369 FLTQLEGESHKRLVKLIQRALL----ITKQVPASPRFEGYWIPSGSELTSEATHYIITPRVQKNLADLARAISSGKFPIL  444 (1856)
T ss_pred             HHHhcchHHHHHHHHHHHHHHH----hcccCCCCcccceeecCCCCccccccceeeccHHHHHHHHHHHHHHhcCCCCeE
Confidence               0111111112222222222    22222222               2367899954      566665         


Q ss_pred             HhhhcccCCcccC------ChhhHHHhhhhhHHHHHhhhcCChhhHHHHHHHHHHHHHhhhhhhHHHHhhccccCcccch
Q psy4730        1030 IMGLTQLPASHCK------APDKMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKTISA 1103 (1513)
Q Consensus      1030 ~~g~~~~~~~~~~------~~~~~~rl~~hE~~rvf~drl~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1103 (1513)
                      +||.+.++|+++.      ++..++|+.+||                              |++.++|++.+.....   
T Consensus       445 lqG~tssGKtsii~~la~~~g~~~vrinnhe------------------------------htd~qeyig~y~~~~~---  491 (1856)
T KOG1808|consen  445 LQGPTSSGKTSIIKELARATGKNIVRINNHE------------------------------HTDLQEYIGTYVADDN---  491 (1856)
T ss_pred             EecCcCcCchhHHHHHHHHhccCceehhccc------------------------------cchHHHHHHhhhcCCC---
Confidence            5899999999985      889999999999                              9999999997765433   


Q ss_pred             hhcccceeccccccccccCCccccccccchhhHhHHHHHHHHHHHHHHHHHhhcccccccc-ceEEecCceEEEEEecCC
Q psy4730        1104 DDLRSLFFGNFLGNTIIFPGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEG-TEISLNPTSMIFITMNPG 1182 (1513)
Q Consensus      1104 ~~~~~l~f~~fv~~~~~~~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g-~~i~~~p~~~iFiTmNp~ 1182 (1513)
                         .++.|-+-+--.|++.|+|..|||+|+.+.+||.|+       ++++..+++.+..++ +.++.||+|++|+|.||+
T Consensus       492 ---g~l~freg~LV~Alr~G~~~vlD~lnla~~dvL~aL-------nrllddnRel~ipe~~rlv~~h~~f~lfatqn~~  561 (1856)
T KOG1808|consen  492 ---GDLVFREGVLVQALRNGDWIVLDELNLAPHDVLEAL-------NRLLDDNRELFIPETQRLVKAHPEFMLFATQNPP  561 (1856)
T ss_pred             ---CCeeeehhHHHHHHHhCCEEEeccccccchHHHHHH-------HhhhhhhccccccccceeeccCcchhhhhhccCc
Confidence               455666666667899999999999999999999665       788889999999997 689999999999999995


Q ss_pred             --CCCCCCCchhHHhhhhccccc-CCChHHHHHHHHHhcCccchHHHHHHHHHHHHHH--HhhccCCCCCCcchhhHHHH
Q psy4730        1183 --YAGRTELPDNLKVLFRSVAMM-VPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLC--SEQLSSQSHYDYGMRAVKSV 1257 (1513)
Q Consensus      1183 --y~gr~~LP~nLk~lFR~v~~~-~PD~~~I~ei~L~~~GF~~a~~la~ki~~~~~l~--~~~ls~q~~yd~glR~lk~v 1257 (1513)
                        |+||+.|-.+|++.|-++.+. .|.-.+.  .+ ...+...++..+++++..|.-+  ++|+|.=.+..-|+-.++..
T Consensus       562 ~~y~grk~lsRa~~~rf~e~~f~~~~e~e~~--~i-~~~~~~i~~~~~~k~~~~~~~L~~~rqls~i~e~~~~~gtlrd~  638 (1856)
T KOG1808|consen  562 GTYGGRKILSRALRNRFIELHFDDIGEEELE--EI-LEHRCGIPPSYEKKMVQVMRELSLRRQLSRIFEQKPSFGTLRDL  638 (1856)
T ss_pred             cccchhhhhhhcccccchhhhhhhcCchhhh--hh-hcccccCCchHHHHHHHHhhhhhhHHHHhhHHHhccccCCcHHH
Confidence              999999999999999988766 3433322  12 3456778889999999999854  45665222222233344455


Q ss_pred             HHHhhhhhhhCC----CChHHHHHHHHHHhhcCCCCcccchhhHHHHhhccCCCCCCCCCCchHHHHHHHHHHHHcCccc
Q psy4730        1258 LNAAGSLKIKYP----EKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQA 1333 (1513)
Q Consensus      1258 l~~a~~l~~~~~----~~~E~~~l~~ai~~~~~pkl~~~d~~lf~~li~~~Fp~~~~~~~~~~~l~~~i~~~~~~~~l~~ 1333 (1513)
                      .+++.+......    ...+..+.+-|-+..     ...+...-             ..+....+.+++.......  ..
T Consensus       639 f~w~~r~~e~~~~~~~~l~~~g~~~L~~r~r-----~~~~~~~v-------------~~~~e~~~~~~~~~~~l~~--~~  698 (1856)
T KOG1808|consen  639 FRWLLRFTETIAESNDQLAENGYMLLSSRQR-----YEKEKRLV-------------QQPLEKVMRKAVDKDQLST--VW  698 (1856)
T ss_pred             HHHHhhccccccchhhhhhhhhHHHhhhhhh-----ccchhhhh-------------hccchhhhHHHHHHHHHHh--hc
Confidence            555544221111    111222333332221     11111111             1122234556665555543  34


Q ss_pred             cHHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC-----------
Q psy4730        1334 TDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----------- 1402 (1513)
Q Consensus      1334 ~~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----------- 1402 (1513)
                      ++.+..-.+.-..+......+ ++|++||||||++++++.....              .+.+++-++.+           
T Consensus       699 t~~m~r~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~  763 (1856)
T KOG1808|consen  699 TPGMTRLTIEKALVLAIKEQV-LVGLTGCGDTTVCQILAEKSGV--------------ALRILNAHEHTEAQRPNVLFRE  763 (1856)
T ss_pred             chhhhhhhhhHHHHHHhhcch-hcccccccchhhhhhhhhcccc--------------eeeeehhhhhhhhccccccccc
Confidence            455555455555556667788 9999999999999999866542              33444444444           


Q ss_pred             -hhhcccccc---CCCCCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecC-----CCe
Q psy4730        1403 -MGQLYGEFD---SASHEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLIN-----GEI 1471 (1513)
Q Consensus      1403 -~~eL~G~~~---~~t~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~n-----Ge~ 1471 (1513)
                       .+...|.-+   .+.-+|.||+|+.+++.+        .-++.|  -+.+.+..|++|++|...++|.+..     ++.
T Consensus       764 n~~~~~~~~~~~~~~~~ew~dglLi~a~~~G--------~~~l~Dei~la~dsvleRln~~Le~~rtL~~~e~~~a~~~~  835 (1856)
T KOG1808|consen  764 NLQHDEIREDKMLKDLFEWSDGLLIGAQGVG--------KQFLVDEISLAEDSVLERLNEVLEPDRTLLLLENQTAEEET  835 (1856)
T ss_pred             cchhhHhhhhhhhhccccccCccchhhhhcc--------chhhhhccccchhhHHHHHHHHhCcccccccccccccchhc
Confidence             233333333   233479999999999998        566677  4557778999999999999999887     666


Q ss_pred             eecCCCCeEEEeecCC------CCCCcchhhccEEEEeeCC
Q psy4730        1472 IKMSNTMNLIFECENL------EFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1472 i~~~~~~~~iFE~~~l------~~asPatvsRcg~v~~~~~ 1506 (1513)
                      +...+...+ +-+.+.      +-+|||--.|..-+|+.+.
T Consensus       836 v~A~~~f~~-~atmnpGgd~gkkEls~AlrNrfte~~~~~~  875 (1856)
T KOG1808|consen  836 VIAEEGFQL-VATMNPGGDYGKKELSPALRNRFTEVILQSL  875 (1856)
T ss_pred             eeecccchh-hhccCCccccceeecChhhhhceeEEEEecc
Confidence            777776555 455555      4499999999999998654

>KOG1808|consensus

Probab=99.88  E-value=3.9e-22  Score=263.96  Aligned_cols=334  Identities=18%  Similarity=0.230  Sum_probs=232.1

Q ss_pred             cccCCccccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccc-c--ceEEecCceEEEEEecCC-CCCCCCCchhHH
Q psy4730        1119 IIFPGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFE-G--TEISLNPTSMIFITMNPG-YAGRTELPDNLK 1194 (1513)
Q Consensus      1119 ~~~~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~-g--~~i~~~p~~~iFiTmNp~-y~gr~~LP~nLk 1194 (1513)
                      ++..|.|..+||+|..+.+.|-++++-+..        ...+..+ |  ..+..||++.+|.+|||. ..|+..||...+
T Consensus       209 ~~~~g~w~lldeinla~~~~l~~i~~vl~~--------~~i~l~e~~d~~~l~~hp~f~~f~cmnp~td~gK~~l~~~~r  280 (1856)
T KOG1808|consen  209 TISNGEWLLLDEINLASAETLELISQVLGK--------CSILLSERGDYTPLKIHPNFRIFACMNPATDVGKRDLKPGKR  280 (1856)
T ss_pred             HHhccchhhhhhhccchHHHHHHHHHhccC--------ceeeccccccccccCCCcchhhhhccCccchhhhhhcCcchh
Confidence            566999999999999999999888666544        2222222 2  568899999999999995 699999999999


Q ss_pred             hhhhcccccCCChHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhhccCCC--CCCcchhhHHHHHHHhhhhhhhCCCCh
Q psy4730        1195 VLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQS--HYDYGMRAVKSVLNAAGSLKIKYPEKD 1272 (1513)
Q Consensus      1195 ~lFR~v~~~~PD~~~I~ei~L~~~GF~~a~~la~ki~~~~~l~~~~ls~q~--~yd~glR~lk~vl~~a~~l~~~~~~~~ 1272 (1513)
                      +.|+.+++..|....=..+.-...-+........+++.+|...+.......  .--+.+|.+.+.|+.+-...   |. .
T Consensus       281 ~~~te~~v~~~~~~~~~~l~~~~~~~~i~~e~v~~~~e~~~~~k~~~~~dg~~~~~~s~r~l~raL~~v~~~~---~~-~  356 (1856)
T KOG1808|consen  281 NRFTEFSVHTSLEDADLSLSVVDKYIAISSEPVRNIVELYLSAKSLSLVDGNQRPLYSIRTLCRALRIVLDSL---PA-E  356 (1856)
T ss_pred             cceEEEEEechhhhhhhhhhhhccccccchhhHHhHHHHhhhccccccccccccchhhhhhHHHHHHHHHHhh---hh-h
Confidence            999999998776532222221111123334444457777766544431111  11356777777776643211   11 2


Q ss_pred             HHHHHHHHHHhhcCCCCcccchhhHHHHhhccCC-CCCCCCCCchHHHHHHH----HHHH-HcCccccHHHHHHHHHHHH
Q psy4730        1273 EFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFP-GIELPPTDRDELIEQIK----INLA-KRNAQATDWYIEKIIQVYE 1346 (1513)
Q Consensus      1273 E~~~l~~ai~~~~~pkl~~~d~~lf~~li~~~Fp-~~~~~~~~~~~l~~~i~----~~~~-~~~l~~~~~~~~k~~qL~~ 1346 (1513)
                      -..-++.+.+..++..|..+.......++...|= ....|...  .+.....    +... ...+..|+...+....+.+
T Consensus       357 ~~~slyE~~~~sflt~le~~s~~~~~~l~~~~~~~~~q~P~~~--~~~~~~i~~gs~~~~~~~~~i~T~~vq~~la~~~~  434 (1856)
T KOG1808|consen  357 VDRSLYEAFCMSFLTQLEGESHKRLVKLIQRALLITKQVPASP--RFEGYWIPSGSELTSEATHYIITPRVQKNLADLAR  434 (1856)
T ss_pred             hhcchHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcccCCCCc--ccceeecCCCCccccccceeeccHHHHHHHHHHHH
Confidence            2334666666666677777666666666654442 11222221  1111110    0011 1225566666666777777


Q ss_pred             HHHhc-ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC-hhhccc-cccCCCCC--CccCH
Q psy4730        1347 MILVR-HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-MGQLYG-EFDSASHE--WRDGI 1421 (1513)
Q Consensus      1347 ~~~~~-~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t-~~eL~G-~~~~~t~e--W~DG~ 1421 (1513)
                      +..++ -+++|.||||||||++++.||+++++              ++.+||.+..| .+|+.| ++...+++  |++|+
T Consensus       435 a~~~~~~pillqG~tssGKtsii~~la~~~g~--------------~~vrinnhehtd~qeyig~y~~~~~g~l~freg~  500 (1856)
T KOG1808|consen  435 AISSGKFPILLQGPTSSGKTSIIKELARATGK--------------NIVRINNHEHTDLQEYIGTYVADDNGDLVFREGV  500 (1856)
T ss_pred             HHhcCCCCeEEecCcCcCchhHHHHHHHHhcc--------------CceehhccccchHHHHHHhhhcCCCCCeeeehhH
Confidence            76666 49999999999999999999999874              56777776666 999999 55555554  99999


Q ss_pred             HHHHHHHhhccCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCC
Q psy4730        1422 LAKTFREMAVSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE 1488 (1513)
Q Consensus      1422 l~~~lR~~~~~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~ 1488 (1513)
                      +..++|++        .|+||||  -+.+..+|.||.+|||||.|.+|+|.|.--++..+++|-|.+-.
T Consensus       501 LV~Alr~G--------~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~  561 (1856)
T KOG1808|consen  501 LVQALRNG--------DWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPP  561 (1856)
T ss_pred             HHHHHHhC--------CEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCc
Confidence            99999999        9999997  45777899999999999999999999988888899999998764

>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]

Probab=99.81  E-value=3.1e-20  Score=230.57  Aligned_cols=320  Identities=12%  Similarity=-0.006  Sum_probs=237.7

Q ss_pred             ccccCCccccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccccceEEecCceEEEEEecCCCCCCCCCchhHHhhh
Q psy4730        1118 TIIFPGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPGYAGRTELPDNLKVLF 1197 (1513)
Q Consensus      1118 ~~~~~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g~~i~~~p~~~iFiTmNp~y~gr~~LP~nLk~lF 1197 (1513)
                      +.+..|+|| +||+|++++-++ +|+.-+..++..++.........-++-...|++.+|+|.||    |+++|+|+|..|
T Consensus       983 g~~~~~~~g-~~e~~~lde~~~-~i~~~~~~~~~~~~~~~~~~s~~~e~~~~sp~t~v~~~in~----r~~~~e~~~~a~ 1056 (3164)
T COG5245         983 GPICEEERG-TEESALLDEISR-TILVDEYLNSDEFRMLEELNSAVVEHGLKSPSTPVEMIINE----RNIVLEIGRRAL 1056 (3164)
T ss_pred             cceehhhcc-chhHHHHHHHHH-HHhhhHHhcchHHHHHHHHHHHHHHcCCCCCCCceEEEecc----hhhHHHHHHHHH
Confidence            456689999 999999999999 77777777888888777666666677788999999999999    899999999999


Q ss_pred             hcccccCCChHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhhccCCCCCCcchhhHHHHHHHhhhhhhhCCCChHHHHH
Q psy4730        1198 RSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAGSLKIKYPEKDEFVIV 1277 (1513)
Q Consensus      1198 R~v~~~~PD~~~I~ei~L~~~GF~~a~~la~ki~~~~~l~~~~ls~q~~yd~glR~lk~vl~~a~~l~~~~~~~~E~~~l 1277 (1513)
                      |.+.|-.| ...|++..         ++|+++|++|..+....++..+||-|  |.++.+|+.+..+..+..+. +.. +
T Consensus      1057 ~~f~~~~p-~g~i~~~~---------~sl~~~i~~f~~~~~~~~~~~~~~~f--~~~~~~l~~~~~~l~e~~e~-~~~-i 1122 (3164)
T COG5245        1057 DMFLSNIP-FGAIKSRR---------ESLDREIGAFNNEVDGIAREEDELMF--YPMFKSLKAKHRMLEEKTEY-LNK-I 1122 (3164)
T ss_pred             HHHHhcCC-chhHHHHH---------HHHHHHHHHHHHHhhhhhcccchhhh--HHHHHHHhhcchHHHHhhHH-HHH-H
Confidence            99999999 88888763         78999999999999999999999998  99999999988776554332 111 2


Q ss_pred             HHHHHhhcCCCCcccchhhHHHHhhccCCCCCCCCCCchHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHhcceEEEe
Q psy4730        1278 LRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILVRHGLMVV 1357 (1513)
Q Consensus      1278 ~~ai~~~~~pkl~~~d~~lf~~li~~~Fp~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~k~~qL~~~~~~~~gvilv 1357 (1513)
                      +..   .-+|.+...    +.+. .|.|.... .+-..........+.-+-.|+.+.. |+    ..|.+..+...-+++
T Consensus      1123 ~~~---~~lp~i~dt----l~e~-~~~~da~~-~~~~~~s~~~~~~~s~q~sg~~~a~-f~----~f~~~~~t~~~~~~~ 1188 (3164)
T COG5245        1123 LSI---TGLPLISDT----LRER-IDTLDAEW-DSFCRISESLKKYESQQVSGLDVAQ-FV----SFLRSVDTGAFHAEY 1188 (3164)
T ss_pred             HHH---hCCCchhHH----HHHH-HHHHhhcC-CchhHHHHHHHHHhhccccCccHHH-HH----HHHHHhhhcHHHHHH
Confidence            222   124544332    1111 23332110 0001111122222333344555443 44    488899999999999


Q ss_pred             ccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhccC-CCC
Q psy4730        1358 GESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVST-TPD 1436 (1513)
Q Consensus      1358 G~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~~~-~~~ 1436 (1513)
                      |..|+|||..|+.....+...            ...+++.       +   ++| ++-||+ |+|+.+.|+-.... ...
T Consensus      1189 ~~~~~~k~~~~~~~~d~~~h~------------~~~yv~~-------~---~~~-a~~e~r-~~f~~~~r~d~~~~~~~s 1244 (3164)
T COG5245        1189 FRVFLCKIKHYTDACDYLWHV------------KSPYVKK-------K---YFD-ADMELR-QFFLMFNREDMEARLADS 1244 (3164)
T ss_pred             HHHhhcccchhhhhhcccccc------------CchhhHH-------H---Hhh-hhHHHH-HHHHHHhHHhhhhhhccc
Confidence            999999999999877654431            1123333       2   344 678999 99999999755433 457


Q ss_pred             ceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeCCCCcc
Q psy4730        1437 RKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKCISW 1510 (1513)
Q Consensus      1437 ~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~~~~~w 1510 (1513)
                      +-|++||.     ++|.+|+++||||.+++|+||+       +++||  ||. .+||||+||++-|.+..-.+.
T Consensus      1245 ~~~~~~~~-----yve~~~a~~~~~kl~~~~~ge~-------~v~~~--nl~-s~~~~v~rc~~~~ds~~~~St 1303 (3164)
T COG5245        1245 KMEYEVER-----YVEKTKAEVSSLKLELSSVGEG-------QVVVS--NLG-SIGDKVGRCLVEYDSISRLST 1303 (3164)
T ss_pred             eEEEehHH-----HHHHHHhhhccceeeeccCCCc-------eEEEe--eCC-Cccchhheeeeeecccchhcc
Confidence            79999997     8899999999999999999999       89999  888 889999999999988766543

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=99.46  E-value=7.1e-13  Score=152.75  Aligned_cols=130  Identities=23%  Similarity=0.200  Sum_probs=101.0

Q ss_pred             cCCccccccccchhhHhHHHHHHHHHHHHHHHHHhhcccccc-----ccceEEecCceEEEEEecCC-CCCCCCCchhHH
Q psy4730        1121 FPGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMF-----EGTEISLNPTSMIFITMNPG-YAGRTELPDNLK 1194 (1513)
Q Consensus      1121 ~~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~-----~g~~i~~~p~~~iFiTmNp~-y~gr~~LP~nLk 1194 (1513)
                      ..|.|+++||+|++++++.+.+.+.       +..+  .+..     .++.+.+||+|++++|+||. |.|..++|++|+
T Consensus       104 ~~g~~lllDEi~r~~~~~q~~Ll~~-------Le~~--~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~  174 (262)
T TIGR02640       104 REGFTLVYDEFTRSKPETNNVLLSV-------FEEG--VLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALL  174 (262)
T ss_pred             HcCCEEEEcchhhCCHHHHHHHHHH-------hcCC--eEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHH
Confidence            3789999999999999998766443       3322  1111     23568899999999999995 999999999999


Q ss_pred             hhhhcccccCCChHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhhccCCCCCCcchhhHHHHHHHhhhh
Q psy4730        1195 VLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAGSL 1264 (1513)
Q Consensus      1195 ~lFR~v~~~~PD~~~I~ei~L~~~GF~~a~~la~ki~~~~~l~~~~ls~q~~yd~glR~lk~vl~~a~~l 1264 (1513)
                      .+|..+.+..||...-.++..  .+|..+..++++++.++..++   +...++..|.|..-.+.+.+...
T Consensus       175 ~R~~~i~i~~P~~~~e~~Il~--~~~~~~~~~~~~iv~~~~~~R---~~~~~~~~~~r~~i~~~~~~~~~  239 (262)
T TIGR02640       175 DRLITIFMDYPDIDTETAILR--AKTDVAEDSAATIVRLVREFR---ASGDEITSGLRASLMIAEVATQQ  239 (262)
T ss_pred             hhcEEEECCCCCHHHHHHHHH--HhhCCCHHHHHHHHHHHHHHH---hhCCccCCcHHHHHHHHHHHHHc
Confidence            999999999999877666654  345678889999999999988   34567788988776665555443

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.38  E-value=7.1e-13  Score=137.94  Aligned_cols=124  Identities=27%  Similarity=0.337  Sum_probs=98.7

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCC-CChhhccccccC--CCCCCccCHHHHHHHHh
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKS-ITMGQLYGEFDS--ASHEWRDGILAKTFREM 1429 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~-~t~~eL~G~~~~--~t~eW~DG~l~~~lR~~ 1429 (1513)
                      +|||+||||||||++++.+++.++.              .+..++..+ .+..+|+|.+++  ...+|.||.+.+++++.
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~~--------------~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~   66 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLGR--------------PVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKG   66 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHTC--------------EEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhhc--------------ceEEEEeccccccccceeeeeecccccccccccccccccce
Confidence            6999999999999999999999842              445555555 779999999997  44569999999999977


Q ss_pred             hccCCCCceEEEEcCCC--ChHHHHhhhcccCCCCceeecCCCeeecCCC------CeEEEeecCCC----CCCcchhhc
Q psy4730        1430 AVSTTPDRKWIMFDGPI--DAVWIENMNTVLDDNKKLCLINGEIIKMSNT------MNLIFECENLE----FASPATVSR 1497 (1513)
Q Consensus      1430 ~~~~~~~~~WivfDG~~--d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~------~~~iFE~~~l~----~asPatvsR 1497 (1513)
                              .|+++|+.-  ++.+++.|+++||+++......++.+..+++      +++|+.+.+-.    ..+||+.+|
T Consensus        67 --------~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~R  138 (139)
T PF07728_consen   67 --------GILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDR  138 (139)
T ss_dssp             --------EEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT
T ss_pred             --------eEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhh
Confidence                    999999644  8999999999999887776666777877764      88888887776    899999999


Q ss_pred             c
Q psy4730        1498 V 1498 (1513)
Q Consensus      1498 c 1498 (1513)
                      |
T Consensus       139 f  139 (139)
T PF07728_consen  139 F  139 (139)
T ss_dssp             -
T ss_pred             C
Confidence            7

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=99.37  E-value=8.3e-12  Score=144.40  Aligned_cols=173  Identities=18%  Similarity=0.198  Sum_probs=127.5

Q ss_pred             ccCCccccccccchhhHhHHHHHHHHHHHHHHHHHhhcccccc-ccceEEecCceEEEEEecC-C-------CCCCCCCc
Q psy4730        1120 IFPGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMF-EGTEISLNPTSMIFITMNP-G-------YAGRTELP 1190 (1513)
Q Consensus      1120 ~~~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~-~g~~i~~~p~~~iFiTmNp-~-------y~gr~~LP 1190 (1513)
                      ++.|.|+++||||++++++++++       ++++..+...... .++.|..||.|++|+|+|| |       |.|...||
T Consensus       132 ~~~g~illlDEin~a~p~~~~~L-------~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~  204 (327)
T TIGR01650       132 LQHNVALCFDEYDAGRPDVMFVI-------QRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQIN  204 (327)
T ss_pred             HhCCeEEEechhhccCHHHHHHH-------HHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCC
Confidence            34899999999999999999776       4444443333333 3678889999999999999 4       99999999


Q ss_pred             hhHHhhhhcc-cccCCChHHHHHHHHHh-cCcc--chHHHHHHHHHHHHHHHhhccCCCCCCcchhhHHHHHHHhhhhhh
Q psy4730        1191 DNLKVLFRSV-AMMVPDYAMIGEISLYS-MGFQ--NAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAGSLKI 1266 (1513)
Q Consensus      1191 ~nLk~lFR~v-~~~~PD~~~I~ei~L~~-~GF~--~a~~la~ki~~~~~l~~~~ls~q~~yd~glR~lk~vl~~a~~l~~ 1266 (1513)
                      +++..+|.-+ .|.-|+...-.++.... .|+.  .+..+.++++.+-...++.+-.. .... --+.+.+++++.....
T Consensus       205 ~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la~~tR~~~~~~-~i~~-~~SpR~li~w~~~~~~  282 (327)
T TIGR01650       205 QAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVADMTRNAFING-DIST-VMSPRTVITWAENAEI  282 (327)
T ss_pred             HHHHhheeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhccC-Cccc-cccHHHHHHHHHHHHh
Confidence            9999999864 78888887766666543 3543  25678889999888888754221 1111 1245667777765433


Q ss_pred             hCCCChHHHHHHHHHHhhcCCCCcccchhhHHHHhhccCCC
Q psy4730        1267 KYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPG 1307 (1513)
Q Consensus      1267 ~~~~~~E~~~l~~ai~~~~~pkl~~~d~~lf~~li~~~Fp~ 1307 (1513)
                      -..      -+..|++..++-|-...+.+...++...+|+.
T Consensus       283 f~~------~~~~a~~~~~~n~~~~~er~~~~e~~q~~f~~  317 (327)
T TIGR01650       283 FDH------DIALAFRLTFLNKCDELERPTVAEFFQRAFGE  317 (327)
T ss_pred             hCc------cHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCC
Confidence            211      37889999999999999999999999999974

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PHA02244 ATPase-like protein

Probab=99.24  E-value=4.4e-11  Score=139.45  Aligned_cols=145  Identities=14%  Similarity=0.201  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCC
Q psy4730        1335 DWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSAS 1414 (1513)
Q Consensus      1335 ~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t 1414 (1513)
                      +.+......+-+.+..+.+|+|.||||||||++++.++..++              ..++.+| ..++..++.|..+. .
T Consensus       103 p~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg--------------~pfv~In-~l~d~~~L~G~i~~-~  166 (383)
T PHA02244        103 PTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALD--------------LDFYFMN-AIMDEFELKGFIDA-N  166 (383)
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhC--------------CCEEEEe-cChHHHhhcccccc-c
Confidence            344445556667788899999999999999999999998864              3456666 22345567886654 4


Q ss_pred             CCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCC-----
Q psy4730        1415 HEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL----- 1487 (1513)
Q Consensus      1415 ~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l----- 1487 (1513)
                      +.|.||.|.++++++        .|+++|  +.++++....||++||+. .+.++ |+++..++++++|+-....     
T Consensus       167 g~~~dgpLl~A~~~G--------gvLiLDEId~a~p~vq~~L~~lLd~r-~l~l~-g~~i~~h~~FRlIATsN~~~~G~~  236 (383)
T PHA02244        167 GKFHETPFYEAFKKG--------GLFFIDEIDASIPEALIIINSAIANK-FFDFA-DERVTAHEDFRVISAGNTLGKGAD  236 (383)
T ss_pred             ccccchHHHHHhhcC--------CEEEEeCcCcCCHHHHHHHHHHhccC-eEEec-CcEEecCCCEEEEEeeCCCccCcc
Confidence            589999999999988        899999  556899999999999875 66665 7889999999988866542     


Q ss_pred             ------CCCCcchhhccEEEEeeC
Q psy4730        1488 ------EFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1488 ------~~asPatvsRcg~v~~~~ 1505 (1513)
                            ...+||+++|+..|+++-
T Consensus       237 ~~y~G~k~L~~AllDRFv~I~~dy  260 (383)
T PHA02244        237 HIYVARNKIDGATLDRFAPIEFDY  260 (383)
T ss_pred             cccCCCcccCHHHHhhcEEeeCCC
Confidence                  557899999999998874

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.22  E-value=1.5e-09  Score=140.36  Aligned_cols=130  Identities=18%  Similarity=0.218  Sum_probs=86.8

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCC----CChhhccccccCCCCCCccCHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKS----ITMGQLYGEFDSASHEWRDGILAKTFRE 1428 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~----~t~~eL~G~~~~~t~eW~DG~l~~~lR~ 1428 (1513)
                      .++++||||||||++.+.||+.++.              .+.++|...    .+...|+|.-..-.+....|.|+.++|+
T Consensus       490 ~~Lf~GP~GvGKT~lAk~LA~~l~~--------------~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~  555 (758)
T PRK11034        490 SFLFAGPTGVGKTEVTVQLSKALGI--------------ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK  555 (758)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC--------------CcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHh
Confidence            6899999999999999999998842              234444433    3478899852111122456899998886


Q ss_pred             hhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCC------------------
Q psy4730        1429 MAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE------------------ 1488 (1513)
Q Consensus      1429 ~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~------------------ 1488 (1513)
                      .      ...-++||  .-+++.....|-.+||+ +.++-..|..+.+. |+-+|+- +|+.                  
T Consensus       556 ~------p~sVlllDEieka~~~v~~~LLq~ld~-G~ltd~~g~~vd~r-n~iiI~T-sN~g~~~~~~~~~g~~~~~~~~  626 (758)
T PRK11034        556 H------PHAVLLLDEIEKAHPDVFNLLLQVMDN-GTLTDNNGRKADFR-NVVLVMT-TNAGVRETERKSIGLIHQDNST  626 (758)
T ss_pred             C------CCcEEEeccHhhhhHHHHHHHHHHHhc-CeeecCCCceecCC-CcEEEEe-CCcCHHHHhhcccCcccchhhH
Confidence            4      23679999  46688888899999976 46676667766543 3334443 3432                  


Q ss_pred             --------CCCcchhhccE-EEEeeC
Q psy4730        1489 --------FASPATVSRVG-MIYFEL 1505 (1513)
Q Consensus      1489 --------~asPatvsRcg-~v~~~~ 1505 (1513)
                              ...|..+.|+- +|.|.|
T Consensus       627 ~~~~~~~~~f~pefl~Rid~ii~f~~  652 (758)
T PRK11034        627 DAMEEIKKIFTPEFRNRLDNIIWFDH  652 (758)
T ss_pred             HHHHHHHHhcCHHHHccCCEEEEcCC
Confidence                    24488888884 666654

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.18  E-value=1.8e-09  Score=141.71  Aligned_cols=111  Identities=20%  Similarity=0.237  Sum_probs=74.5

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecC----CCCChhhccccccCCCCCC-ccCHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINP----KSITMGQLYGEFDSASHEW-RDGILAKTFR 1427 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp----~~~t~~eL~G~~~~~t~eW-~DG~l~~~lR 1427 (1513)
                      .++++||||+|||++.+.|++.++.              ...+++-    ...+...|+|.... --++ ..|.++.++|
T Consensus       486 ~~lf~Gp~GvGKT~lA~~la~~l~~--------------~~~~~d~se~~~~~~~~~lig~~~g-yvg~~~~~~l~~~~~  550 (731)
T TIGR02639       486 SFLFTGPTGVGKTELAKQLAEALGV--------------HLERFDMSEYMEKHTVSRLIGAPPG-YVGFEQGGLLTEAVR  550 (731)
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcC--------------CeEEEeCchhhhcccHHHHhcCCCC-CcccchhhHHHHHHH
Confidence            4799999999999999999998842              2334432    23345667765311 0112 3568888888


Q ss_pred             HhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCC
Q psy4730        1428 EMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL 1487 (1513)
Q Consensus      1428 ~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l 1487 (1513)
                      +.      ...-++||  ..++|.....|-.+||+. .++-..|..+.+. ++-+|+ |+|+
T Consensus       551 ~~------p~~VvllDEieka~~~~~~~Ll~~ld~g-~~~d~~g~~vd~~-~~iii~-Tsn~  603 (731)
T TIGR02639       551 KH------PHCVLLLDEIEKAHPDIYNILLQVMDYA-TLTDNNGRKADFR-NVILIM-TSNA  603 (731)
T ss_pred             hC------CCeEEEEechhhcCHHHHHHHHHhhccC-eeecCCCcccCCC-CCEEEE-CCCc
Confidence            54      23799999  577899999999999864 5676667777655 333333 5544

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=99.18  E-value=1.8e-10  Score=132.92  Aligned_cols=150  Identities=19%  Similarity=0.232  Sum_probs=114.1

Q ss_pred             ccHHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCC-CCChhhcccccc
Q psy4730        1333 ATDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPK-SITMGQLYGEFD 1411 (1513)
Q Consensus      1333 ~~~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~-~~t~~eL~G~~~ 1411 (1513)
                      .++.+..-.-++...+..+.+|+|.||||||||++.+.|++.++.              .+..++.. .++..+|+|.+.
T Consensus         3 ~t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~--------------~~~~i~~~~~~~~~dllg~~~   68 (262)
T TIGR02640         3 ETDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDR--------------PVMLINGDAELTTSDLVGSYA   68 (262)
T ss_pred             CCHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCC--------------CEEEEeCCccCCHHHHhhhhc
Confidence            344445555566677888999999999999999999999986542              33444443 445678888754


Q ss_pred             C--------------------CCCCCccCHHHHHHHHhhccCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecC-
Q psy4730        1412 S--------------------ASHEWRDGILAKTFREMAVSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLIN- 1468 (1513)
Q Consensus      1412 ~--------------------~t~eW~DG~l~~~lR~~~~~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~n- 1468 (1513)
                      .                    ....|.||.+..+++++        .|+++|+  -++++....|+++|++ +.+++++ 
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g--------~~lllDEi~r~~~~~q~~Ll~~Le~-~~~~i~~~  139 (262)
T TIGR02640        69 GYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVREG--------FTLVYDEFTRSKPETNNVLLSVFEE-GVLELPGK  139 (262)
T ss_pred             ccchhhHHHHHHHHhhhhhcccceeecCchHHHHHHcC--------CEEEEcchhhCCHHHHHHHHHHhcC-CeEEccCC
Confidence            2                    12369999999999876        8999995  5688999999999986 6889986 


Q ss_pred             ---CCeeecCCCCeEEEeecCCC-----CCCcchhhccEEEEeeC
Q psy4730        1469 ---GEIIKMSNTMNLIFECENLE-----FASPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1469 ---Ge~i~~~~~~~~iFE~~~l~-----~asPatvsRcg~v~~~~ 1505 (1513)
                         |+.++.+|++++|+-+..-.     ..++|...||..++++-
T Consensus       140 ~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~  184 (262)
T TIGR02640       140 RGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDY  184 (262)
T ss_pred             CCCCceEecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCC
Confidence               46688999999888554332     34789999999888765

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.17  E-value=4.3e-08  Score=129.65  Aligned_cols=133  Identities=22%  Similarity=0.235  Sum_probs=91.4

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCC----CCChhhccccccCCCCCCccCHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPK----SITMGQLYGEFDSASHEWRDGILAKTFRE 1428 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~----~~t~~eL~G~~~~~t~eW~DG~l~~~lR~ 1428 (1513)
                      .++++||||+|||.+.+.|++.+-.  .         ...+.++|-.    ..+...|+|.--.--+.=..|.|+..+|+
T Consensus       598 ~~lf~Gp~GvGKT~lA~~La~~l~~--~---------~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~  666 (852)
T TIGR03345       598 VFLLVGPSGVGKTETALALAELLYG--G---------EQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRR  666 (852)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhC--C---------CcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHh
Confidence            3799999999999999999998742  0         0133445432    33455666631000011146899999986


Q ss_pred             hhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCC-------------------
Q psy4730        1429 MAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL------------------- 1487 (1513)
Q Consensus      1429 ~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l------------------- 1487 (1513)
                      .      ...-|+||  ..++|...+.|-.+||+. .|+-+.|..+.+.+ .-+|+- +|+                   
T Consensus       667 ~------p~svvllDEieka~~~v~~~Llq~ld~g-~l~d~~Gr~vd~~n-~iiI~T-SNlg~~~~~~~~~~~~~~~~~~  737 (852)
T TIGR03345       667 K------PYSVVLLDEVEKAHPDVLELFYQVFDKG-VMEDGEGREIDFKN-TVILLT-SNAGSDLIMALCADPETAPDPE  737 (852)
T ss_pred             C------CCcEEEEechhhcCHHHHHHHHHHhhcc-eeecCCCcEEeccc-cEEEEe-CCCchHHHHHhccCcccCcchH
Confidence            3      23689999  688999999999999875 57878898888774 445543 333                   


Q ss_pred             -----------CCCCcchhhccEEEEeeC
Q psy4730        1488 -----------EFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1488 -----------~~asPatvsRcg~v~~~~ 1505 (1513)
                                 ..-.|+.++||-+|.|.|
T Consensus       738 ~~~~~~~~~~~~~f~PEflnRi~iI~F~p  766 (852)
T TIGR03345       738 ALLEALRPELLKVFKPAFLGRMTVIPYLP  766 (852)
T ss_pred             HHHHHHHHHHHHhccHHHhcceeEEEeCC
Confidence                       125689999999888875

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=99.15  E-value=1.5e-10  Score=133.99  Aligned_cols=134  Identities=22%  Similarity=0.256  Sum_probs=103.4

Q ss_pred             HHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCC-CChhhccccccC---CC---CCCc
Q psy4730        1346 EMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKS-ITMGQLYGEFDS---AS---HEWR 1418 (1513)
Q Consensus      1346 ~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~-~t~~eL~G~~~~---~t---~eW~ 1418 (1513)
                      ..+..+..|+|.|+|||||||+++.||+.++.              .+.+|+... ++..+|.|..-.   .+   .+|.
T Consensus        59 ~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~--------------~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~  124 (327)
T TIGR01650        59 AGFAYDRRVMVQGYHGTGKSTHIEQIAARLNW--------------PCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFR  124 (327)
T ss_pred             HHHhcCCcEEEEeCCCChHHHHHHHHHHHHCC--------------CeEEEEecCCCChhhcCCCceeeccCCcceeEEe
Confidence            34556789999999999999999999999874              334454433 557889997422   11   3799


Q ss_pred             cCHHHHHHHHhhccCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecC-CCeeecCCCCeEEEeecCCC-------
Q psy4730        1419 DGILAKTFREMAVSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLIN-GEIIKMSNTMNLIFECENLE------- 1488 (1513)
Q Consensus      1419 DG~l~~~lR~~~~~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~n-Ge~i~~~~~~~~iFE~~~l~------- 1488 (1513)
                      ||.|+.++|.+        .|++||.  -++|.....||++||+.+.|++++ |+.|+.+|++++|.-.....       
T Consensus       125 ~GpL~~A~~~g--------~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~  196 (327)
T TIGR01650       125 DGILPWALQHN--------VALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGL  196 (327)
T ss_pred             cCcchhHHhCC--------eEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcc
Confidence            99999999987        9999994  558899999999999999999986 67777777766655443332       


Q ss_pred             -----CCCcchhhccEEE
Q psy4730        1489 -----FASPATVSRVGMI 1501 (1513)
Q Consensus      1489 -----~asPatvsRcg~v 1501 (1513)
                           ...+|+..|..++
T Consensus       197 y~Gt~~l~~A~lDRF~i~  214 (327)
T TIGR01650       197 YHGTQQINQAQMDRWSIV  214 (327)
T ss_pred             eeeeecCCHHHHhheeeE
Confidence                 1358999999876

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.99  E-value=2.2e-07  Score=123.60  Aligned_cols=110  Identities=19%  Similarity=0.271  Sum_probs=70.2

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCC----CChhhccccccCCCCCCcc-CHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKS----ITMGQLYGEFDSASHEWRD-GILAKTFR 1427 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~----~t~~eL~G~~~~~t~eW~D-G~l~~~lR 1427 (1513)
                      .++++||||+|||++.+.||+.+-.-           ...+.+++-..    .+...|+|.- |.--+..+ |.|+..+|
T Consensus       541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~-----------~~~~~~~d~s~~~~~~~~~~l~g~~-~gyvg~~~~~~l~~~~~  608 (821)
T CHL00095        541 SFLFSGPTGVGKTELTKALASYFFGS-----------EDAMIRLDMSEYMEKHTVSKLIGSP-PGYVGYNEGGQLTEAVR  608 (821)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcCC-----------ccceEEEEchhccccccHHHhcCCC-CcccCcCccchHHHHHH
Confidence            47899999999999999999887421           12234444322    3455666641 11112333 67888887


Q ss_pred             HhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEE
Q psy4730        1428 EMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIF 1482 (1513)
Q Consensus      1428 ~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iF 1482 (1513)
                      +..      ..-|+||  .-+++.....|-.+||+. .++-+.|..+.+. ++-+|+
T Consensus       609 ~~p------~~VvllDeieka~~~v~~~Llq~le~g-~~~d~~g~~v~~~-~~i~I~  657 (821)
T CHL00095        609 KKP------YTVVLFDEIEKAHPDIFNLLLQILDDG-RLTDSKGRTIDFK-NTLIIM  657 (821)
T ss_pred             hCC------CeEEEECChhhCCHHHHHHHHHHhccC-ceecCCCcEEecC-ceEEEE
Confidence            642      3789999  467888888888888654 5666677777664 333443

>PRK10865 protein disaggregation chaperone; Provisional

Probab=98.98  E-value=1.8e-07  Score=124.30  Aligned_cols=132  Identities=21%  Similarity=0.295  Sum_probs=85.4

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCC----CChhhccccccCCCCCCc-cCHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKS----ITMGQLYGEFDSASHEWR-DGILAKTFR 1427 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~----~t~~eL~G~~~~~t~eW~-DG~l~~~lR 1427 (1513)
                      .++++||||+|||++.++|++.+..-.           ..+..++...    .+...|+|.- |...+.. .|.++..+|
T Consensus       600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~-----------~~~i~id~se~~~~~~~~~LiG~~-pgy~g~~~~g~l~~~v~  667 (857)
T PRK10865        600 SFLFLGPTGVGKTELCKALANFMFDSD-----------DAMVRIDMSEFMEKHSVSRLVGAP-PGYVGYEEGGYLTEAVR  667 (857)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhhcCC-----------CcEEEEEhHHhhhhhhHHHHhCCC-CcccccchhHHHHHHHH
Confidence            589999999999999999998774210           1233444333    3467788842 1111222 367777777


Q ss_pred             HhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCC------------------
Q psy4730        1428 EMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL------------------ 1487 (1513)
Q Consensus      1428 ~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l------------------ 1487 (1513)
                      ..      ...-++||  +.+++.....|-.+||+. .++-..|..+.+.+ .-+|+ |+|+                  
T Consensus       668 ~~------p~~vLllDEieka~~~v~~~Ll~ile~g-~l~d~~gr~vd~rn-~iiI~-TSN~g~~~~~~~~~~~~~~~~~  738 (857)
T PRK10865        668 RR------PYSVILLDEVEKAHPDVFNILLQVLDDG-RLTDGQGRTVDFRN-TVVIM-TSNLGSDLIQERFGELDYAHMK  738 (857)
T ss_pred             hC------CCCeEEEeehhhCCHHHHHHHHHHHhhC-ceecCCceEEeecc-cEEEE-eCCcchHHHHHhccccchHHHH
Confidence            53      12588999  677888888888888776 44555677776653 33333 5555                  


Q ss_pred             --------CCCCcchhhcc-EEEEeeC
Q psy4730        1488 --------EFASPATVSRV-GMIYFEL 1505 (1513)
Q Consensus      1488 --------~~asPatvsRc-g~v~~~~ 1505 (1513)
                              ..-.|+.++|+ .+|.|.|
T Consensus       739 ~~~~~~~~~~f~PELlnRld~iivF~P  765 (857)
T PRK10865        739 ELVLGVVSHNFRPEFINRIDEVVVFHP  765 (857)
T ss_pred             HHHHHHHcccccHHHHHhCCeeEecCC
Confidence                    23468899999 6666655

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=98.85  E-value=5.7e-06  Score=110.62  Aligned_cols=115  Identities=22%  Similarity=0.274  Sum_probs=75.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCC----CChhhccccccCCCCCC-ccCHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKS----ITMGQLYGEFDSASHEW-RDGILAKTF 1426 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~----~t~~eL~G~~~~~t~eW-~DG~l~~~l 1426 (1513)
                      ..++++||||+|||++.+.|++.+..-           ...+.++|...    .....|+|.- |.-.+. ..|.|+..+
T Consensus       596 ~~~Lf~Gp~GvGKt~lA~~La~~l~~~-----------~~~~i~~d~s~~~~~~~~~~l~g~~-~g~~g~~~~g~l~~~v  663 (852)
T TIGR03346       596 GSFLFLGPTGVGKTELAKALAEFLFDD-----------EDAMVRIDMSEYMEKHSVARLIGAP-PGYVGYEEGGQLTEAV  663 (852)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhcCC-----------CCcEEEEechhhcccchHHHhcCCC-CCccCcccccHHHHHH
Confidence            468999999999999999999887421           12344555433    3355666642 111122 247888888


Q ss_pred             HHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCC
Q psy4730        1427 REMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL 1487 (1513)
Q Consensus      1427 R~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l 1487 (1513)
                      |+..      ..-++||  +.+++.....|-.+||+. .++-..|..+.+. |+-+| =|+|+
T Consensus       664 ~~~p------~~vlllDeieka~~~v~~~Ll~~l~~g-~l~d~~g~~vd~r-n~iiI-~TSn~  717 (852)
T TIGR03346       664 RRKP------YSVVLFDEVEKAHPDVFNVLLQVLDDG-RLTDGQGRTVDFR-NTVII-MTSNL  717 (852)
T ss_pred             HcCC------CcEEEEeccccCCHHHHHHHHHHHhcC-ceecCCCeEEecC-CcEEE-EeCCc
Confidence            7531      2579999  678898888888888765 4566667777765 33344 45555

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PHA02244 ATPase-like protein

Probab=98.66  E-value=1.3e-07  Score=110.97  Aligned_cols=113  Identities=24%  Similarity=0.256  Sum_probs=75.1

Q ss_pred             HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeec-ceEEEEeecCC----------CCCCChhhhccceE
Q psy4730         889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLV-DIIYITAMIPT----------MNTITGRLLRHMNI  957 (1513)
Q Consensus       889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~-~~~~~~a~~~~----------~~~~~~r~~~~f~~  957 (1513)
                      +++||++...++      ++..|..+++++ ++++.+- .+..| ++++|+|+||+          ++.+++.++.||..
T Consensus       184 LiLDEId~a~p~------vq~~L~~lLd~r-~l~l~g~-~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~  255 (383)
T PHA02244        184 FFIDEIDASIPE------ALIIINSAIANK-FFDFADE-RVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAP  255 (383)
T ss_pred             EEEeCcCcCCHH------HHHHHHHHhccC-eEEecCc-EEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEE
Confidence            446999977755      778899999876 4554432 34344 99999999993          58899999999999


Q ss_pred             eecCCCChHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccccchhhHHHHHhhh
Q psy4730         958 ISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIMGL 1033 (1513)
Q Consensus       958 ~~~~~~~~~~l~~i~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hy~fnlrd~~~~~~g~ 1033 (1513)
                      +.+++|+.... .|- ..         .+...    ++++.....+         .-..-.+.||+|++-++.++.
T Consensus       256 I~~dyp~~~E~-~i~-~~---------~~~lv----~~a~~lR~~~---------~~~~l~~~~StR~li~~a~~~  307 (383)
T PHA02244        256 IEFDYDEKIEH-LIS-NG---------DEDLV----NFVALLRHEM---------AEKGLDHVFSMRAIIHGKKFD  307 (383)
T ss_pred             eeCCCCcHHHH-HHh-hh---------HHHHH----HHHHHHHHHH---------hcCCCCccccHHHHHHHHHhh
Confidence            99999984222 221 10         01111    1222222222         124566899999999998875

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=98.65  E-value=1.6e-08  Score=105.29  Aligned_cols=60  Identities=18%  Similarity=0.307  Sum_probs=42.7

Q ss_pred             HhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeec-------ceEEEEeecCC---CCCCChhhhccc
Q psy4730         890 ILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLV-------DIIYITAMIPT---MNTITGRLLRHM  955 (1513)
Q Consensus       890 ~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~-------~~~~~~a~~~~---~~~~~~r~~~~f  955 (1513)
                      ++||+|.+..+      +++.|..+++.+.+.-.........+       ++.+||+|||.   ++.+++.|++||
T Consensus        70 ~lDEin~a~~~------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf  139 (139)
T PF07728_consen   70 VLDEINRAPPE------VLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF  139 (139)
T ss_dssp             EESSCGG--HH------HHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred             EECCcccCCHH------HHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence            35999987755      89999999998877644333333333       39999999997   489999999998

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=6.3e-06  Score=104.97  Aligned_cols=113  Identities=22%  Similarity=0.292  Sum_probs=79.3

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCC----CCChhhccccccCCCC-CC-ccCHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPK----SITMGQLYGEFDSASH-EW-RDGILAKTF 1426 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~----~~t~~eL~G~~~~~t~-eW-~DG~l~~~l 1426 (1513)
                      ..+++||||+|||-+.+.||..+..=           .....++|-.    .+|.+.|.|.  |.+. ++ .=|.||.++
T Consensus       523 sFlF~GPTGVGKTELAkaLA~~Lfg~-----------e~aliR~DMSEy~EkHsVSrLIGa--PPGYVGyeeGG~LTEaV  589 (786)
T COG0542         523 SFLFLGPTGVGKTELAKALAEALFGD-----------EQALIRIDMSEYMEKHSVSRLIGA--PPGYVGYEEGGQLTEAV  589 (786)
T ss_pred             EEEeeCCCcccHHHHHHHHHHHhcCC-----------CccceeechHHHHHHHHHHHHhCC--CCCCceeccccchhHhh
Confidence            45679999999999999999998620           1234555433    3446777773  1111 11 258999999


Q ss_pred             HHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCC
Q psy4730        1427 REMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL 1487 (1513)
Q Consensus      1427 R~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l 1487 (1513)
                      |+-      -..-|+||  -=.+|.+..-|=.||||. .||=+.|-.+-+.+.  +|+=|+|+
T Consensus       590 Rr~------PySViLlDEIEKAHpdV~nilLQVlDdG-rLTD~~Gr~VdFrNt--iIImTSN~  643 (786)
T COG0542         590 RRK------PYSVILLDEIEKAHPDVFNLLLQVLDDG-RLTDGQGRTVDFRNT--IIIMTSNA  643 (786)
T ss_pred             hcC------CCeEEEechhhhcCHHHHHHHHHHhcCC-eeecCCCCEEeccee--EEEEeccc
Confidence            974      23689999  456888999999999876 688888988888743  44445555

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=98.52  E-value=2.2e-07  Score=92.73  Aligned_cols=64  Identities=22%  Similarity=0.297  Sum_probs=42.9

Q ss_pred             cccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccccceEEecCceEEEEEecC-CCCCCCCCchhHHhhh
Q psy4730        1125 WACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNP-GYAGRTELPDNLKVLF 1197 (1513)
Q Consensus      1125 W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g~~i~~~p~~~iFiTmNp-~y~gr~~LP~nLk~lF 1197 (1513)
                      +..+||+||.++.+.|++-+.++         ...+..+|...++...|.+++|+|| .+.|..+||+.+..+|
T Consensus        65 ill~DEiNrappktQsAlLeam~---------Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF  129 (131)
T PF07726_consen   65 ILLADEINRAPPKTQSALLEAME---------ERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF  129 (131)
T ss_dssp             EEEEETGGGS-HHHHHHHHHHHH---------HSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred             eeeecccccCCHHHHHHHHHHHH---------cCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence            56789999999999988855433         2467788999999999999999999 6899999999999887

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=98.42  E-value=1.6e-06  Score=103.81  Aligned_cols=108  Identities=25%  Similarity=0.300  Sum_probs=77.0

Q ss_pred             cccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccccce-EEecCceEEEEEecCC-CCCCCCCchhHHhhh-hccc
Q psy4730        1125 WACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTE-ISLNPTSMIFITMNPG-YAGRTELPDNLKVLF-RSVA 1201 (1513)
Q Consensus      1125 W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g~~-i~~~p~~~iFiTmNp~-y~gr~~LP~nLk~lF-R~v~ 1201 (1513)
                      -+.+||+||.++++.+++-+.       +...  .+...|.. +.+++.|.+.+|+||+ |.|..+||+.++.+| -.+.
T Consensus       115 ill~DEInra~p~~q~aLl~~-------l~e~--~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~  185 (329)
T COG0714         115 ILLLDEINRAPPEVQNALLEA-------LEER--QVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIY  185 (329)
T ss_pred             EEEEeccccCCHHHHHHHHHH-------HhCc--EEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEe
Confidence            568999999999999877443       3333  34445555 9999999999999995 889999999999999 8888


Q ss_pred             ccCCChHH-HHHHHHHhcCccc--hHHHHHHHHHHHHHHHhhc
Q psy4730        1202 MMVPDYAM-IGEISLYSMGFQN--AKILAEKIVYTYKLCSEQL 1241 (1513)
Q Consensus      1202 ~~~PD~~~-I~ei~L~~~GF~~--a~~la~ki~~~~~l~~~~l 1241 (1513)
                      +.-|+... ...+.....|...  .....+.++......+.+.
T Consensus       186 v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  228 (329)
T COG0714         186 VDYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQK  228 (329)
T ss_pred             cCCCCchHHHHHHHHhCccccccccchhhhhhhCHHHHHHHHh
Confidence            88885544 4334444444332  4556666766666655443

>KOG0733|consensus

Probab=98.29  E-value=1.2e-05  Score=96.98  Aligned_cols=46  Identities=15%  Similarity=0.126  Sum_probs=34.7

Q ss_pred             ceEEEEeecCCCCCCChhhhc--cc-eEeecCCCChHHHHHHHHHHhhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLR--HM-NIISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~--~f-~~~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      .+..|||+|-|- .++|.|+|  || +.|.+.-|+...-.+|.+.+.+++
T Consensus       329 ~VlVIgATnRPD-slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~l  377 (802)
T KOG0733|consen  329 PVLVIGATNRPD-SLDPALRRAGRFDREICLGVPSETAREEILRIICRGL  377 (802)
T ss_pred             CeEEEecCCCCc-ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhC
Confidence            377889988662 36666664  45 459999999999999999887764

>KOG0736|consensus

Probab=98.27  E-value=2.7e-05  Score=96.48  Aligned_cols=94  Identities=22%  Similarity=0.238  Sum_probs=60.0

Q ss_pred             EEEeeeeccCCccceeecccchHHHHHHHHHHHhhcCCCCCCCCCCCCccchHHHHHHhcCEEEEEEcCCCCCCCCCCCC
Q psy4730         626 TVQYGYEYLGNSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPTFPPNLRP  705 (1513)
Q Consensus       626 ~~~YgyEY~G~~~rlV~Tplt~r~~~~l~~al~~~~g~~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~~~f~~~~~~  705 (1513)
                      ...|.|-+-.+...+|.|+.+.+-.-.+-..+...++.    +.+-++++.+..+...+--+   ++|+..         
T Consensus       363 ~~~~~~~i~~~~T~lv~~~~~ss~~~~lps~~~~l~n~----~~~~~~~~~~~~l~~vl~p~---~~~s~~---------  426 (953)
T KOG0736|consen  363 GNESAYIIDTNHTSLVLVGATSSRVPLLPSSLSTLWNS----LSPPGLEAKVLELVAVLSPQ---KQPSGA---------  426 (953)
T ss_pred             CccceEEEcCCCceEEEccccccCCcCCChhhHHHhcc----CCCccchHHHHHHHHHhCcc---cCcchh---------
Confidence            56677777888889999998865411111222211121    24567777777777665543   344322         


Q ss_pred             ccccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccC
Q psy4730         706 SDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       706 ~~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~  754 (1513)
                                         .++.+-.+||.|+||||||+.|....+.+.
T Consensus       427 -------------------~~~~~~~vLLhG~~g~GK~t~V~~vas~lg  456 (953)
T KOG0736|consen  427 -------------------LLTLNPSVLLHGPPGSGKTTVVRAVASELG  456 (953)
T ss_pred             -------------------ccccceEEEEeCCCCCChHHHHHHHHHHhC
Confidence                               123445688999999999999999988764

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=98.25  E-value=5.8e-06  Score=99.81  Aligned_cols=153  Identities=16%  Similarity=0.207  Sum_probs=106.1

Q ss_pred             HHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCC--CCCCccCH
Q psy4730        1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSA--SHEWRDGI 1421 (1513)
Q Consensus      1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~--t~eW~DG~ 1421 (1513)
                      +..++..+..|++.||||+|||++.+.|+..+..-..       ...+...... ...+..++.|.+.|.  +..|.+|+
T Consensus       187 l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~~~~~-------~~~v~~VtFH-psySYeDFI~G~rP~~vgy~~~~G~  258 (459)
T PRK11331        187 ILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKA-------PQRVNMVQFH-QSYSYEDFIQGYRPNGVGFRRKDGI  258 (459)
T ss_pred             HHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhcCCcc-------cceeeEEeec-ccccHHHHhcccCCCCCCeEecCch
Confidence            4555667899999999999999999999987752100       0112222232 356677888777655  34589999


Q ss_pred             HHHHHHHhhccCCCCceEEEEc----CCCChHHHHhhhcccCCCC-----ceeec----CCCeeecCCCCeEEEeec---
Q psy4730        1422 LAKTFREMAVSTTPDRKWIMFD----GPIDAVWIENMNTVLDDNK-----KLCLI----NGEIIKMSNTMNLIFECE--- 1485 (1513)
Q Consensus      1422 l~~~lR~~~~~~~~~~~WivfD----G~~d~~wiE~LNsvLDdn~-----~L~L~----nGe~i~~~~~~~~iFE~~--- 1485 (1513)
                      |.++.+++..+ ....+|+|+|    |+++...=|- =++||..+     .+.|+    +++.+.+|+|+++|--+.   
T Consensus       259 f~~~~~~A~~~-p~~~~vliIDEINRani~kiFGel-~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~D  336 (459)
T PRK11331        259 FYNFCQQAKEQ-PEKKYVFIIDEINRANLSKVFGEV-MMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTAD  336 (459)
T ss_pred             HHHHHHHHHhc-ccCCcEEEEehhhccCHHHhhhhh-hhhccccccccccceeeeccccccccccCCCCeEEEEecCccc
Confidence            99998876543 3456999999    5555544444 45666432     23443    257899999999888773   


Q ss_pred             -CCCCCCcchhhccEEEEeeCC
Q psy4730        1486 -NLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1486 -~l~~asPatvsRcg~v~~~~~ 1506 (1513)
                       ++....+|.--|...|.+.|.
T Consensus       337 rs~~~lD~AlrRRF~fi~i~p~  358 (459)
T PRK11331        337 RSLAVVDYALRRRFSFIDIEPG  358 (459)
T ss_pred             cchhhccHHHHhhhheEEecCC
Confidence             334688999999999999884

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=98.17  E-value=3.1e-06  Score=102.08  Aligned_cols=70  Identities=17%  Similarity=0.246  Sum_probs=52.6

Q ss_pred             HHHhhccCCCCCcc-CCCCChHHHHHHHHhcC--C-------ccccCCc-eeeeecceEEEEeecCC-CC--CCChhhhc
Q psy4730         888 EMILDDLNMPQKET-YGAQPAVELLRQIIDHK--H-------LYDFQTV-TRVDLVDIIYITAMIPT-MN--TITGRLLR  953 (1513)
Q Consensus       888 ~~~~dd~n~p~~~~-~~~q~~le~lr~~~~~~--~-------~yd~~~~-~~~~~~~~~~~~a~~~~-~~--~~~~r~~~  953 (1513)
                      .+++||+|.+..++ +|..      .+++|++  |       .|+.++. .+....|+.++||||.. |.  .++..|+|
T Consensus       275 vliIDEINRani~kiFGel------~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR  348 (459)
T PRK11331        275 VFIIDEINRANLSKVFGEV------MMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR  348 (459)
T ss_pred             EEEEehhhccCHHHhhhhh------hhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh
Confidence            46789999999885 5654      6677753  2       3544432 45566799999999998 43  69999999


Q ss_pred             cceEeecCCC
Q psy4730         954 HMNIISIDSF  963 (1513)
Q Consensus       954 ~f~~~~~~~~  963 (1513)
                      ||..+.+.+.
T Consensus       349 RF~fi~i~p~  358 (459)
T PRK11331        349 RFSFIDIEPG  358 (459)
T ss_pred             hhheEEecCC
Confidence            9999988873

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=98.14  E-value=3e-05  Score=102.70  Aligned_cols=122  Identities=18%  Similarity=0.307  Sum_probs=68.8

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
                      .+||+|+||||||||++.+++|..++              ..+..+.+     .++++.|--.+    +..+..+++.+.
T Consensus       487 ~~giLL~GppGtGKT~lakalA~e~~--------------~~fi~v~~-----~~l~~~~vGes----e~~i~~~f~~A~  543 (733)
T TIGR01243       487 PKGVLLFGPPGTGKTLLAKAVATESG--------------ANFIAVRG-----PEILSKWVGES----EKAIREIFRKAR  543 (733)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhcC--------------CCEEEEeh-----HHHhhcccCcH----HHHHHHHHHHHH
Confidence            46999999999999999999987754              23344443     34444332111    123444554442


Q ss_pred             ccCCCCceEEEEcCC----------CChHHHHh-hhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchh--hc
Q psy4730        1431 VSTTPDRKWIMFDGP----------IDAVWIEN-MNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATV--SR 1497 (1513)
Q Consensus      1431 ~~~~~~~~WivfDG~----------~d~~wiE~-LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatv--sR 1497 (1513)
                      .   ....-|+||.-          .+....++ +|.+|      +..+|  +.-..++.+|.-|.....+-||..  +|
T Consensus       544 ~---~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL------~~ldg--~~~~~~v~vI~aTn~~~~ld~allRpgR  612 (733)
T TIGR01243       544 Q---AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLL------TEMDG--IQELSNVVVIAATNRPDILDPALLRPGR  612 (733)
T ss_pred             h---cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHH------HHhhc--ccCCCCEEEEEeCCChhhCCHhhcCCCc
Confidence            2   23478888841          11111111 22222      11122  222456778888888888889888  58


Q ss_pred             cE-EEEeeCC
Q psy4730        1498 VG-MIYFELK 1506 (1513)
Q Consensus      1498 cg-~v~~~~~ 1506 (1513)
                      +. .||++.-
T Consensus       613 fd~~i~v~~P  622 (733)
T TIGR01243       613 FDRLILVPPP  622 (733)
T ss_pred             cceEEEeCCc
Confidence            85 4555543

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG0730|consensus

Probab=98.06  E-value=7.2e-05  Score=91.99  Aligned_cols=128  Identities=23%  Similarity=0.305  Sum_probs=74.3

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
                      --.||+++||||||||++.+++|..-+                   +|--++.-.|||-.|.-.    .+-.+-.++|++
T Consensus       467 ppkGVLlyGPPGC~KT~lAkalAne~~-------------------~nFlsvkgpEL~sk~vGe----SEr~ir~iF~kA  523 (693)
T KOG0730|consen  467 PPKGVLLYGPPGCGKTLLAKALANEAG-------------------MNFLSVKGPELFSKYVGE----SERAIREVFRKA  523 (693)
T ss_pred             CCceEEEECCCCcchHHHHHHHhhhhc-------------------CCeeeccCHHHHHHhcCc----hHHHHHHHHHHH
Confidence            346999999999999999999985533                   333445555555544322    122344555555


Q ss_pred             hccCCCCceEEEEcCCCChHHHHh-------hhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhh--c-cE
Q psy4730        1430 AVSTTPDRKWIMFDGPIDAVWIEN-------MNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVS--R-VG 1499 (1513)
Q Consensus      1430 ~~~~~~~~~WivfDG~~d~~wiE~-------LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvs--R-cg 1499 (1513)
                      .+.   ....|.||. +|+.-.++       =.+||  |-.|+-.+|=.-.  .++-++=.|.=-....||.+.  | =-
T Consensus       524 R~~---aP~IiFfDE-iDsi~~~R~g~~~~v~~RVl--sqLLtEmDG~e~~--k~V~ViAATNRpd~ID~ALlRPGRlD~  595 (693)
T KOG0730|consen  524 RQV---APCIIFFDE-IDALAGSRGGSSSGVTDRVL--SQLLTEMDGLEAL--KNVLVIAATNRPDMIDPALLRPGRLDR  595 (693)
T ss_pred             hhc---CCeEEehhh-HHhHhhccCCCccchHHHHH--HHHHHHccccccc--CcEEEEeccCChhhcCHHHcCCcccce
Confidence            332   337888884 33333333       12222  2344555553322  456666555555667788877  3 46


Q ss_pred             EEEeeCCCC
Q psy4730        1500 MIYFELKCI 1508 (1513)
Q Consensus      1500 ~v~~~~~~~ 1508 (1513)
                      |||++..++
T Consensus       596 iiyVplPD~  604 (693)
T KOG0730|consen  596 IIYVPLPDL  604 (693)
T ss_pred             eEeecCccH
Confidence            888887665

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=97.88  E-value=3.4e-05  Score=92.45  Aligned_cols=53  Identities=25%  Similarity=0.306  Sum_probs=43.7

Q ss_pred             chHHHHHHHHHHHhhcCCCCCCCCCCCCccchHHHHHHhcCEEEEEEcCCCCC
Q psy4730         646 TDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPT  698 (1513)
Q Consensus       646 t~r~~~~l~~al~~~~g~~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~~~  698 (1513)
                      .+.....+..|+-.+....+.||+|+|||.+++.+|+.+|.+++.++|++.+.
T Consensus        29 ~~~~~~~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~   81 (329)
T COG0714          29 DEEVIELALLALLAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLL   81 (329)
T ss_pred             cHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCC
Confidence            34445555566666666777999999999999999999999999999998876

>TIGR03689 pup_AAA proteasome ATPase

Probab=97.79  E-value=0.0002  Score=89.10  Aligned_cols=46  Identities=24%  Similarity=0.319  Sum_probs=39.9

Q ss_pred             cceEEEEeecCCCCCCChhhhc--cceE-eecCCCChHHHHHHHHHHhhh
Q psy4730         932 VDIIYITAMIPTMNTITGRLLR--HMNI-ISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       932 ~~~~~~~a~~~~~~~~~~r~~~--~f~~-~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .++.+|+|+|++. .|+|.++|  ||.. ++++.|+.+....||..++..
T Consensus       332 ~~ViVI~ATN~~d-~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~  380 (512)
T TIGR03689       332 DNVIVIGASNRED-MIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD  380 (512)
T ss_pred             CceEEEeccCChh-hCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence            3678899998874 49999999  9876 999999999999999998765

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=97.78  E-value=0.00045  Score=85.11  Aligned_cols=94  Identities=18%  Similarity=0.198  Sum_probs=57.4

Q ss_pred             HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC--CCCCChhhhccc--eEeecCCCC
Q psy4730         889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT--MNTITGRLLRHM--NIISIDSFN  964 (1513)
Q Consensus       889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~--~~~~~~r~~~~f--~~~~~~~~~  964 (1513)
                      +++||+.... +..+.+....++|.+-+..+            ..+.+|++.++.  ...+++|+.++|  ..+.+++++
T Consensus       142 iviDE~d~l~-~~~~~~~l~~l~~~~~~~~~------------~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~  208 (394)
T PRK00411        142 VALDDINYLF-EKEGNDVLYSLLRAHEEYPG------------ARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYT  208 (394)
T ss_pred             EEECCHhHhh-ccCCchHHHHHHHhhhccCC------------CeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCC
Confidence            4568887544 22333333444453332211            146677777765  334788888777  468999999


Q ss_pred             hHHHHHHHHHHhhhhhhc-cchhHHHHHHHHH
Q psy4730         965 EATLSKIFTSVLDWHFSK-GFADSIVKLSKNI  995 (1513)
Q Consensus       965 ~~~l~~i~~~~l~~~~~~-~f~~~~~~~~~~~  995 (1513)
                      .+++..|+...+...+.. .+.+++.......
T Consensus       209 ~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~  240 (394)
T PRK00411        209 ADEIFDILKDRVEEGFYPGVVDDEVLDLIADL  240 (394)
T ss_pred             HHHHHHHHHHHHHhhcccCCCCHhHHHHHHHH
Confidence            999999999887654422 4555554444333

>KOG0735|consensus

Probab=97.66  E-value=0.00085  Score=82.83  Aligned_cols=88  Identities=25%  Similarity=0.289  Sum_probs=51.9

Q ss_pred             HHHHH--HhhcCCCCcccchhhHHHHhhccCCC----CCCCCC---------CchHHHHHHHHHHHHcCccccHHHHHHH
Q psy4730        1277 VLRAI--IDVNMPKFLVQDLPLFIGIYKDLFPG----IELPPT---------DRDELIEQIKINLAKRNAQATDWYIEKI 1341 (1513)
Q Consensus      1277 l~~ai--~~~~~pkl~~~d~~lf~~li~~~Fp~----~~~~~~---------~~~~l~~~i~~~~~~~~l~~~~~~~~k~ 1341 (1513)
                      +..|+  +..+.||++..  .+|..-++++-|.    +.....         --.+..+++++.+         .|-.|-
T Consensus       621 i~~a~leris~~~klltk--e~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i---------~~P~ky  689 (952)
T KOG0735|consen  621 IHEAFLERISNGPKLLTK--ELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVI---------EWPSKY  689 (952)
T ss_pred             HHHHHHHHhccCcccchH--HHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHH---------hccccc
Confidence            34444  44555554443  3688888888873    221111         1122334444443         222344


Q ss_pred             HHHHHH--HHhcceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1342 IQVYEM--ILVRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1342 ~qL~~~--~~~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      -++|..  +..+.||+|.||||||||-+..++|...
T Consensus       690 p~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~  725 (952)
T KOG0735|consen  690 PQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS  725 (952)
T ss_pred             hHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC
Confidence            456665  4567799999999999999998887654

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=97.65  E-value=0.00011  Score=80.09  Aligned_cols=49  Identities=20%  Similarity=0.289  Sum_probs=37.2

Q ss_pred             HHHhhccCCCCCccCCCCChHHHHHHHHhcCCcc-ccCCceeeeecceEEEEeecC
Q psy4730         888 EMILDDLNMPQKETYGAQPAVELLRQIIDHKHLY-DFQTVTRVDLVDIIYITAMIP  942 (1513)
Q Consensus       888 ~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~y-d~~~~~~~~~~~~~~~~a~~~  942 (1513)
                      .+|+||+|.-+.+      ++|.||+-++.|... .+.......-.+++++|||||
T Consensus       109 VLflDE~~ef~~~------vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NP  158 (206)
T PF01078_consen  109 VLFLDELNEFDRS------VLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNP  158 (206)
T ss_dssp             EEEECETTTS-HH------HHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S
T ss_pred             EEEechhhhcCHH------HHHHHHHHHHCCeEEEEECCceEEEecccEEEEEecc
Confidence            3678999977754      999999999998764 566667777779999999999

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.64  E-value=0.00023  Score=82.47  Aligned_cols=46  Identities=13%  Similarity=0.134  Sum_probs=36.3

Q ss_pred             ceEEEEeecCCC----CCCChhhhccc-eEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTM----NTITGRLLRHM-NIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~----~~~~~r~~~~f-~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ++.+++|..|..    ..++|++.+|| ..+.+++++.+++..|+..++..
T Consensus       143 ~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~  193 (261)
T TIGR02881       143 EFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE  193 (261)
T ss_pred             CEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence            456666665541    25789999999 55999999999999999988765

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>CHL00181 cbbX CbbX; Provisional

Probab=97.62  E-value=0.0002  Score=83.72  Aligned_cols=62  Identities=18%  Similarity=0.247  Sum_probs=46.3

Q ss_pred             CChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCC----CCCChhhhccce-EeecCCCChHHHHHHHHHHhhh
Q psy4730         905 QPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTM----NTITGRLLRHMN-IISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       905 q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~----~~~~~r~~~~f~-~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ..+++.|.++++.+.            .++.+|+|..+.+    ..++|.|.+||. .+.+++|+.+.+..|+..++..
T Consensus       145 ~e~~~~L~~~me~~~------------~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~  211 (287)
T CHL00181        145 SEAIEILLQVMENQR------------DDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE  211 (287)
T ss_pred             HHHHHHHHHHHhcCC------------CCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence            345677777776421            3567777776541    245799999998 5999999999999999998765

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=97.62  E-value=0.0001  Score=79.14  Aligned_cols=123  Identities=13%  Similarity=0.171  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccC---
Q psy4730        1340 KIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDS--- 1412 (1513)
Q Consensus      1340 k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~--- 1412 (1513)
                      -+-++-.+.....+|+|+|++||||+.+.+.+.....+           ..-.+..+|+.+++    ..+|||....   
T Consensus        11 ~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r-----------~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~   79 (168)
T PF00158_consen   11 LREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPR-----------KNGPFISVNCAALPEELLESELFGHEKGAFT   79 (168)
T ss_dssp             HHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTT-----------TTS-EEEEETTTS-HHHHHHHHHEBCSSSST
T ss_pred             HHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhc-----------ccCCeEEEehhhhhcchhhhhhhcccccccc
Confidence            33445555667789999999999999999988763322           12357889999998    5689997542   


Q ss_pred             CCCCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeec
Q psy4730        1413 ASHEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE 1485 (1513)
Q Consensus      1413 ~t~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~ 1485 (1513)
                      .......|.|..+          ..-=+++|  +.+++..-+.|-.+|++++...+.+.+  ..+.++|+|+-|.
T Consensus        80 ~~~~~~~G~l~~A----------~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~--~~~~~~RiI~st~  142 (168)
T PF00158_consen   80 GARSDKKGLLEQA----------NGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDK--PVPVDVRIIASTS  142 (168)
T ss_dssp             TTSSEBEHHHHHT----------TTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSS--EEE--EEEEEEES
T ss_pred             ccccccCCceeec----------cceEEeecchhhhHHHHHHHHHHHHhhchhccccccc--cccccceEEeecC
Confidence            1234566776543          12568888  678999999999999988766664444  4556899999874

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>TIGR00763 lon ATP-dependent protease La

Probab=97.55  E-value=0.0003  Score=93.53  Aligned_cols=83  Identities=22%  Similarity=0.326  Sum_probs=58.8

Q ss_pred             hccCCCCCccCCCCChHHHHHHHHhc---CCccccCCceeeeecceEEEEeecCCCCCCChhhhccceEeecCCCChHHH
Q psy4730         892 DDLNMPQKETYGAQPAVELLRQIIDH---KHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATL  968 (1513)
Q Consensus       892 dd~n~p~~~~~~~q~~le~lr~~~~~---~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l  968 (1513)
                      ||+....++..|.  +...|.+++|-   +.|-|.-....+...++.|++|+|+. ..++|.|++||.++.+++|+.+..
T Consensus       421 DEidk~~~~~~~~--~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~-~~i~~~L~~R~~vi~~~~~~~~e~  497 (775)
T TIGR00763       421 DEIDKIGSSFRGD--PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSI-DTIPRPLLDRMEVIELSGYTEEEK  497 (775)
T ss_pred             echhhcCCccCCC--HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCc-hhCCHHHhCCeeEEecCCCCHHHH
Confidence            7777555443332  45556666662   44544432223445678889888874 469999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy4730         969 SKIFTSVLD  977 (1513)
Q Consensus       969 ~~i~~~~l~  977 (1513)
                      ..|...++.
T Consensus       498 ~~I~~~~l~  506 (775)
T TIGR00763       498 LEIAKKYLI  506 (775)
T ss_pred             HHHHHHHHH
Confidence            999988763

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=97.54  E-value=0.0002  Score=90.75  Aligned_cols=45  Identities=18%  Similarity=0.163  Sum_probs=36.9

Q ss_pred             ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ++.+|||+|+|. .|+|.++|  ||. .+.++.|+.+....|+..++..
T Consensus       193 ~v~vI~aTn~~~-~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~  240 (495)
T TIGR01241       193 GVIVIAATNRPD-VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKN  240 (495)
T ss_pred             CeEEEEecCChh-hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhc
Confidence            477889998873 68888887  774 5999999999999999987764

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK08084 DNA replication initiation factor; Provisional

Probab=97.52  E-value=0.00015  Score=82.62  Aligned_cols=74  Identities=12%  Similarity=0.199  Sum_probs=46.9

Q ss_pred             HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC--CCCCChhhhccc---eEeecCCC
Q psy4730         889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT--MNTITGRLLRHM---NIISIDSF  963 (1513)
Q Consensus       889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~--~~~~~~r~~~~f---~~~~~~~~  963 (1513)
                      +++||+.....+.-.......+++.+.+.|..             ..++++.+||  .+.+.|++.+|+   .++.+.+|
T Consensus       101 liiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~-------------~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~  167 (235)
T PRK08084        101 VCIDNIECIAGDELWEMAIFDLYNRILESGRT-------------RLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPL  167 (235)
T ss_pred             EEEeChhhhcCCHHHHHHHHHHHHHHHHcCCC-------------eEEEeCCCChHHcCcccHHHHHHHhCCceeeecCC
Confidence            34588875443321112234555555543221             1234555666  466889999999   89999999


Q ss_pred             ChHHHHHHHHHH
Q psy4730         964 NEATLSKIFTSV  975 (1513)
Q Consensus       964 ~~~~l~~i~~~~  975 (1513)
                      +.+++..|....
T Consensus       168 ~~~~~~~~l~~~  179 (235)
T PRK08084        168 SDEEKLQALQLR  179 (235)
T ss_pred             CHHHHHHHHHHH
Confidence            999999998763

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.49  E-value=0.00042  Score=71.62  Aligned_cols=126  Identities=17%  Similarity=0.124  Sum_probs=69.7

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCH-HHHHHHHh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGI-LAKTFREM 1429 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~-l~~~lR~~ 1429 (1513)
                      ..+++|+||||+|||++.+.++..+..-           ...+..+++........+.        +..+. ....++..
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~-----------~~~v~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~   79 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANELFRP-----------GAPFLYLNASDLLEGLVVA--------ELFGHFLVRLLFEL   79 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhhcC-----------CCCeEEEehhhhhhhhHHH--------HHhhhhhHhHHHHh
Confidence            6789999999999999999998887521           1234444444332211111        11110 11111111


Q ss_pred             hccCCCCceEEEEcCC--CChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCC--CCCcchhhcc-EEEEee
Q psy4730        1430 AVSTTPDRKWIMFDGP--IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE--FASPATVSRV-GMIYFE 1504 (1513)
Q Consensus      1430 ~~~~~~~~~WivfDG~--~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~--~asPatvsRc-g~v~~~ 1504 (1513)
                        ........+++|..  +++...+.+..++..-....       ..+..+++++.+.+-.  ...+...+|| ..|.++
T Consensus        80 --~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~  150 (151)
T cd00009          80 --AEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-------IDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP  150 (151)
T ss_pred             --hccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-------ccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence              12335689999942  22334444444443322211       4456778888776665  5667888999 555554

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=97.48  E-value=0.00038  Score=81.46  Aligned_cols=47  Identities=17%  Similarity=0.104  Sum_probs=38.9

Q ss_pred             cceEEEEeecCCC----CCCChhhhccce-EeecCCCChHHHHHHHHHHhhh
Q psy4730         932 VDIIYITAMIPTM----NTITGRLLRHMN-IISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       932 ~~~~~~~a~~~~~----~~~~~r~~~~f~-~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .++.+|+|..+.+    ..++|.|.+||. .+.+++++.+++..|+..++..
T Consensus       159 ~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~  210 (284)
T TIGR02880       159 DDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE  210 (284)
T ss_pred             CCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence            4677888887752    346899999995 6999999999999999998766

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.44  E-value=0.00057  Score=83.03  Aligned_cols=129  Identities=18%  Similarity=0.196  Sum_probs=72.7

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccc---------cceeEEEecCCCCChhhccccccCCCCCCc
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWR 1418 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~ 1418 (1513)
                      +..|++++.||+|+||||+.+.+++.+.--... ..++..|         .......++|              .++...
T Consensus        36 ~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~--------------~~~~~v  101 (363)
T PRK14961         36 RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDA--------------ASRTKV  101 (363)
T ss_pred             CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecc--------------cccCCH
Confidence            346889999999999999999999988621110 0011000         0011222222              111111


Q ss_pred             cCHHHHHHHHhhccC-CCCceEEEEcCCCChHHHHhhhccc---CCCCceeecCCCeeecCCCCeEEEeecCCCCCCcch
Q psy4730        1419 DGILAKTFREMAVST-TPDRKWIMFDGPIDAVWIENMNTVL---DDNKKLCLINGEIIKMSNTMNLIFECENLEFASPAT 1494 (1513)
Q Consensus      1419 DG~l~~~lR~~~~~~-~~~~~WivfDG~~d~~wiE~LNsvL---Ddn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPat 1494 (1513)
                      |- +-.++......+ ....+.+|+|. +|..--+..|.+|   ++             .|+++.++|-+++.....|+.
T Consensus       102 ~~-ir~i~~~~~~~p~~~~~kviIIDE-a~~l~~~a~naLLk~lEe-------------~~~~~~fIl~t~~~~~l~~tI  166 (363)
T PRK14961        102 EE-MREILDNIYYSPSKSRFKVYLIDE-VHMLSRHSFNALLKTLEE-------------PPQHIKFILATTDVEKIPKTI  166 (363)
T ss_pred             HH-HHHHHHHHhcCcccCCceEEEEEC-hhhcCHHHHHHHHHHHhc-------------CCCCeEEEEEcCChHhhhHHH
Confidence            11 122222222222 23568999996 2222222333333   33             356788999999998888888


Q ss_pred             hhccEEEEeeCC
Q psy4730        1495 VSRVGMIYFELK 1506 (1513)
Q Consensus      1495 vsRcg~v~~~~~ 1506 (1513)
                      .|||-.+.|.|-
T Consensus       167 ~SRc~~~~~~~l  178 (363)
T PRK14961        167 LSRCLQFKLKII  178 (363)
T ss_pred             HhhceEEeCCCC
Confidence            999999888764

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=97.41  E-value=0.0026  Score=77.63  Aligned_cols=59  Identities=14%  Similarity=0.199  Sum_probs=42.9

Q ss_pred             ceEEEEeecCC--CCCCChhhhccc--eEeecCCCChHHHHHHHHHHhhhhhhc-cchhHHHHH
Q psy4730         933 DIIYITAMIPT--MNTITGRLLRHM--NIISIDSFNEATLSKIFTSVLDWHFSK-GFADSIVKL  991 (1513)
Q Consensus       933 ~~~~~~a~~~~--~~~~~~r~~~~f--~~~~~~~~~~~~l~~i~~~~l~~~~~~-~f~~~~~~~  991 (1513)
                      .+.+++++|.+  ...+.+|+.++|  ..+.+++++.+++..|....+...+.. .+.+++...
T Consensus       165 ~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~  228 (365)
T TIGR02928       165 KVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPL  228 (365)
T ss_pred             eEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHH
Confidence            56778888776  346899999998  468999999999999999887643322 244544433

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.41  E-value=0.00021  Score=73.07  Aligned_cols=114  Identities=18%  Similarity=0.244  Sum_probs=72.4

Q ss_pred             EEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhccC
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVST 1433 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~~~ 1433 (1513)
                      |+|+||||||||++++.+++.++              ..+..+++..+. .+..|..        ...+..+++++....
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~--------------~~~~~i~~~~~~-~~~~~~~--------~~~i~~~~~~~~~~~   57 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG--------------FPFIEIDGSELI-SSYAGDS--------EQKIRDFFKKAKKSA   57 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT--------------SEEEEEETTHHH-TSSTTHH--------HHHHHHHHHHHHHTS
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc--------------cccccccccccc-ccccccc--------ccccccccccccccc
Confidence            68999999999999999998875              345666655443 1211211        112233344432221


Q ss_pred             CCCceEEEEcC--CC-----------ChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchh-hccE
Q psy4730        1434 TPDRKWIMFDG--PI-----------DAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATV-SRVG 1499 (1513)
Q Consensus      1434 ~~~~~WivfDG--~~-----------d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatv-sRcg 1499 (1513)
                        .+.-+++|.  .+           +...++.|.+.+|....-          .+++.+++-+.+.....|+.. +||.
T Consensus        58 --~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~----------~~~~~vI~ttn~~~~i~~~l~~~rf~  125 (132)
T PF00004_consen   58 --KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSK----------NSRVIVIATTNSPDKIDPALLRSRFD  125 (132)
T ss_dssp             --TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTT----------SSSEEEEEEESSGGGSCHHHHSTTSE
T ss_pred             --cceeeeeccchhcccccccccccccccccceeeecccccccc----------cccceeEEeeCChhhCCHhHHhCCCc
Confidence              458888893  11           122355565666544322          667899999999999999999 9998


Q ss_pred             EEE
Q psy4730        1500 MIY 1502 (1513)
Q Consensus      1500 ~v~ 1502 (1513)
                      ...
T Consensus       126 ~~i  128 (132)
T PF00004_consen  126 RRI  128 (132)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            653

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=97.40  E-value=0.00073  Score=87.82  Aligned_cols=62  Identities=16%  Similarity=0.121  Sum_probs=45.2

Q ss_pred             HHHHHHHh-cCCccccCCceeeeecceEEEEeecCCCCCCChhhhc--cc-eEeecCCCChHHHHHHHHHHhhhh
Q psy4730         909 ELLRQIID-HKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLR--HM-NIISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       909 e~lr~~~~-~~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~--~f-~~~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      ..+.+++. -.||++.        .++.++||+|+|. .|+|+++|  || ..+.++.|+.++...|+..++...
T Consensus       273 ~~ln~lL~~mdg~~~~--------~~vivIaaTN~p~-~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~  338 (644)
T PRK10733        273 QTLNQMLVEMDGFEGN--------EGIIVIAATNRPD-VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV  338 (644)
T ss_pred             HHHHHHHHhhhcccCC--------CCeeEEEecCChh-hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC
Confidence            34555543 3455543        3688999999874 57888887  77 468899999999999998877653

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=97.40  E-value=0.00084  Score=81.72  Aligned_cols=132  Identities=14%  Similarity=0.201  Sum_probs=78.4

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccc---------cceeEEEecCCCCChhhccccccCCCCCCccC
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWRDG 1420 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG 1420 (1513)
                      ..|++++.||+|+|||++.+.+|+++.--.....++..|         .+..++.+.|...+    .| ++         
T Consensus        35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~----i~-i~---------  100 (394)
T PRK07940         35 MTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLS----IG-VD---------  100 (394)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEecccccc----CC-HH---------
Confidence            468999999999999999999999875321111111111         23345555553211    00 10         


Q ss_pred             HHHHHHHHhhccC-CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccE
Q psy4730        1421 ILAKTFREMAVST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVG 1499 (1513)
Q Consensus      1421 ~l~~~lR~~~~~~-~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg 1499 (1513)
                      -+-.+++.....+ ....+.+|+|. +|..=-+.-|++|.   .  |   |  ..|+++.+|+-+++.....|+-.|||-
T Consensus       101 ~iR~l~~~~~~~p~~~~~kViiIDe-ad~m~~~aanaLLk---~--L---E--ep~~~~~fIL~a~~~~~llpTIrSRc~  169 (394)
T PRK07940        101 EVRELVTIAARRPSTGRWRIVVIED-ADRLTERAANALLK---A--V---E--EPPPRTVWLLCAPSPEDVLPTIRSRCR  169 (394)
T ss_pred             HHHHHHHHHHhCcccCCcEEEEEec-hhhcCHHHHHHHHH---H--h---h--cCCCCCeEEEEECChHHChHHHHhhCe
Confidence            0122333332222 34678899985 22111233455442   1  1   1  146778899999999999999999999


Q ss_pred             EEEeeCC
Q psy4730        1500 MIYFELK 1506 (1513)
Q Consensus      1500 ~v~~~~~ 1506 (1513)
                      .|+|.+-
T Consensus       170 ~i~f~~~  176 (394)
T PRK07940        170 HVALRTP  176 (394)
T ss_pred             EEECCCC
Confidence            9999764

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=97.39  E-value=0.00066  Score=88.82  Aligned_cols=80  Identities=15%  Similarity=0.308  Sum_probs=61.2

Q ss_pred             hccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC------------------------CCCC
Q psy4730         892 DDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------------------------MNTI  947 (1513)
Q Consensus       892 dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------------------------~~~~  947 (1513)
                      ||+....++      +...|-|++|.|.+.|... ..+...++.+|++.|-.                        +..+
T Consensus       564 DEieka~~~------v~~~LLq~ld~G~ltd~~g-~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f  636 (758)
T PRK11034        564 DEIEKAHPD------VFNLLLQVMDNGTLTDNNG-RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIF  636 (758)
T ss_pred             ccHhhhhHH------HHHHHHHHHhcCeeecCCC-ceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhc
Confidence            777766544      7899999999988877543 34566788899988832                        1347


Q ss_pred             Chhhhccce-EeecCCCChHHHHHHHHHHhhh
Q psy4730         948 TGRLLRHMN-IISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       948 ~~r~~~~f~-~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .|.|++|+. ++.+.+++.+++.+|....+..
T Consensus       637 ~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~  668 (758)
T PRK11034        637 TPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVE  668 (758)
T ss_pred             CHHHHccCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence            799999995 7899999999999998876543

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=97.39  E-value=0.0027  Score=78.77  Aligned_cols=44  Identities=14%  Similarity=0.284  Sum_probs=34.8

Q ss_pred             EEEEeecCC--CCCCChhhhccc---eEeecCCCChHHHHHHHHHHhhh
Q psy4730         935 IYITAMIPT--MNTITGRLLRHM---NIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       935 ~~~~a~~~~--~~~~~~r~~~~f---~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .++++..+|  -..+.+|+.+||   -++.+.+|+.+++..|.......
T Consensus       238 IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~  286 (445)
T PRK12422        238 IVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA  286 (445)
T ss_pred             EEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence            445555555  357999999999   58999999999999999886654

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.36  E-value=0.0011  Score=73.02  Aligned_cols=134  Identities=19%  Similarity=0.261  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHHhc----ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccc
Q psy4730        1335 DWYIEKIIQVYEMILVR----HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEF 1410 (1513)
Q Consensus      1335 ~~~~~k~~qL~~~~~~~----~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~ 1410 (1513)
                      +..+.+.--+.++...+    ..+++.||||+||||+.+++|+.++.              .++..+-.++..       
T Consensus        30 ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~--------------~~~~~sg~~i~k-------   88 (233)
T PF05496_consen   30 EHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGV--------------NFKITSGPAIEK-------   88 (233)
T ss_dssp             HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----------------EEEEECCC--S-------
T ss_pred             HHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCC--------------CeEeccchhhhh-------
Confidence            33444433344444443    37999999999999999999988763              444444323321       


Q ss_pred             cCCCCCCccCHHHHHHHHhhccCCCCceEEEEcC--CCChHHHHhhhcccCCCCc-eeecCC---CeeecC-CCCeEEEe
Q psy4730        1411 DSASHEWRDGILAKTFREMAVSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKK-LCLING---EIIKMS-NTMNLIFE 1483 (1513)
Q Consensus      1411 ~~~t~eW~DG~l~~~lR~~~~~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~-L~L~nG---e~i~~~-~~~~~iFE 1483 (1513)
                              -|-+..++.+.     .....+..|.  -+....-|.|-+.++|... +.+.-|   ..++++ |++.++=.
T Consensus        89 --------~~dl~~il~~l-----~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligA  155 (233)
T PF05496_consen   89 --------AGDLAAILTNL-----KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGA  155 (233)
T ss_dssp             --------CHHHHHHHHT-------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEE
T ss_pred             --------HHHHHHHHHhc-----CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeee
Confidence                    11223333332     2236777784  5578888999999998655 444433   234444 46999999


Q ss_pred             ecCCCCCCcchhhccEEEE
Q psy4730        1484 CENLEFASPATVSRVGMIY 1502 (1513)
Q Consensus      1484 ~~~l~~asPatvsRcg~v~ 1502 (1513)
                      |+.....|++.-+|.|++.
T Consensus       156 TTr~g~ls~pLrdRFgi~~  174 (233)
T PF05496_consen  156 TTRAGLLSSPLRDRFGIVL  174 (233)
T ss_dssp             ESSGCCTSHCCCTTSSEEE
T ss_pred             eccccccchhHHhhcceec
Confidence            9999999999999999984

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>TIGR00763 lon ATP-dependent protease La

Probab=97.36  E-value=0.0027  Score=84.66  Aligned_cols=131  Identities=14%  Similarity=0.177  Sum_probs=81.6

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCC-ChhhccccccCCCCCCc---cCHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI-TMGQLYGEFDSASHEWR---DGILAKTFR 1427 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~-t~~eL~G~~~~~t~eW~---DG~l~~~lR 1427 (1513)
                      ..++|+||||||||++.+.++++++.              ...+++.... +..++.|..    ..|.   .|-+..+++
T Consensus       348 ~~lll~GppG~GKT~lAk~iA~~l~~--------------~~~~i~~~~~~~~~~i~g~~----~~~~g~~~g~i~~~l~  409 (775)
T TIGR00763       348 PILCLVGPPGVGKTSLGKSIAKALNR--------------KFVRFSLGGVRDEAEIRGHR----RTYVGAMPGRIIQGLK  409 (775)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhcC--------------CeEEEeCCCcccHHHHcCCC----CceeCCCCchHHHHHH
Confidence            46999999999999999999999863              3445554333 356666632    2232   344555555


Q ss_pred             HhhccCCCCceEEEEcC-----C-CChHHHHhhhcccCC--CCceeec-CCCeeecCCCCeEEEeecCCCCCCcchhhcc
Q psy4730        1428 EMAVSTTPDRKWIMFDG-----P-IDAVWIENMNTVLDD--NKKLCLI-NGEIIKMSNTMNLIFECENLEFASPATVSRV 1498 (1513)
Q Consensus      1428 ~~~~~~~~~~~WivfDG-----~-~d~~wiE~LNsvLDd--n~~L~L~-nGe~i~~~~~~~~iFE~~~l~~asPatvsRc 1498 (1513)
                      ++..    ....|++|-     + ....-...|-.+||+  |+.+.=. -|..+.+ .++-+|+-+..+....||..+||
T Consensus       410 ~~~~----~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~-s~v~~I~TtN~~~~i~~~L~~R~  484 (775)
T TIGR00763       410 KAKT----KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDL-SKVIFIATANSIDTIPRPLLDRM  484 (775)
T ss_pred             HhCc----CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceecc-CCEEEEEecCCchhCCHHHhCCe
Confidence            5421    223799993     1 111124567777876  3322211 1333333 35667777777778999999999


Q ss_pred             EEEEeeC
Q psy4730        1499 GMIYFEL 1505 (1513)
Q Consensus      1499 g~v~~~~ 1505 (1513)
                      -+|.|.+
T Consensus       485 ~vi~~~~  491 (775)
T TIGR00763       485 EVIELSG  491 (775)
T ss_pred             eEEecCC
Confidence            9988875

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=97.34  E-value=0.00099  Score=84.80  Aligned_cols=129  Identities=16%  Similarity=0.161  Sum_probs=75.8

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHHHhHhhhh-cccccc---------cceeEEEecCCCCChhhccccccCCCCCCc
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-SATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWR 1418 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~-~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~ 1418 (1513)
                      +..|.+++.||+|+||||+.++|++.++--.... ..+..|         ...++..||+.              +   .
T Consensus        36 RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAa--------------s---~   98 (830)
T PRK07003         36 RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAA--------------S---N   98 (830)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEeccc--------------c---c
Confidence            3468999999999999999999999987321110 111111         01122222221              1   1


Q ss_pred             cCH--HHHHHHHhhccC-CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchh
Q psy4730        1419 DGI--LAKTFREMAVST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATV 1495 (1513)
Q Consensus      1419 DG~--l~~~lR~~~~~~-~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatv 1495 (1513)
                      .|+  +-.+++...... ....+.||+|. +|-.=-+..|.+|.     +|-     ..|++++|||-+++.....|...
T Consensus        99 rgVDdIReLIe~a~~~P~~gr~KVIIIDE-ah~LT~~A~NALLK-----tLE-----EPP~~v~FILaTtd~~KIp~TIr  167 (830)
T PRK07003         99 RGVDEMAALLERAVYAPVDARFKVYMIDE-VHMLTNHAFNAMLK-----TLE-----EPPPHVKFILATTDPQKIPVTVL  167 (830)
T ss_pred             ccHHHHHHHHHHHHhccccCCceEEEEeC-hhhCCHHHHHHHHH-----HHH-----hcCCCeEEEEEECChhhccchhh
Confidence            222  222333322222 34578999995 21111244555531     111     13678999999999999999999


Q ss_pred             hccEEEEeeC
Q psy4730        1496 SRVGMIYFEL 1505 (1513)
Q Consensus      1496 sRcg~v~~~~ 1505 (1513)
                      |||-.+.|.+
T Consensus       168 SRCq~f~Fk~  177 (830)
T PRK07003        168 SRCLQFNLKQ  177 (830)
T ss_pred             hheEEEecCC
Confidence            9999998865

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=97.33  E-value=0.0011  Score=78.62  Aligned_cols=119  Identities=18%  Similarity=0.251  Sum_probs=75.9

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
                      .+++|+||||+|||++.+.++..++.              .+..++.....          .     -|.+...++..  
T Consensus        31 ~~~ll~Gp~G~GKT~la~~ia~~~~~--------------~~~~~~~~~~~----------~-----~~~l~~~l~~~--   79 (305)
T TIGR00635        31 DHLLLYGPPGLGKTTLAHIIANEMGV--------------NLKITSGPALE----------K-----PGDLAAILTNL--   79 (305)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCC--------------CEEEeccchhc----------C-----chhHHHHHHhc--
Confidence            35999999999999999999877642              22222211111          0     12233444432  


Q ss_pred             cCCCCceEEEEcC--CCChHHHHhhhcccCCCCcee-ecCC---C--eeecCCCCeEEEeecCCCCCCcchhhccEEE-E
Q psy4730        1432 STTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLC-LING---E--IIKMSNTMNLIFECENLEFASPATVSRVGMI-Y 1502 (1513)
Q Consensus      1432 ~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~-L~nG---e--~i~~~~~~~~iFE~~~l~~asPatvsRcg~v-~ 1502 (1513)
                         ....++++|.  -+++...|.|.+++++.+... +.+|   +  ++.+|+ +.++..|+.....+|+..|||+++ .
T Consensus        80 ---~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~li~~t~~~~~l~~~l~sR~~~~~~  155 (305)
T TIGR00635        80 ---EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPP-FTLVGATTRAGMLTSPLRDRFGIILR  155 (305)
T ss_pred             ---ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCC-eEEEEecCCccccCHHHHhhcceEEE
Confidence               2236899994  456677888999998776443 3333   2  234444 667777777778899999999875 4


Q ss_pred             eeC
Q psy4730        1503 FEL 1505 (1513)
Q Consensus      1503 ~~~ 1505 (1513)
                      +++
T Consensus       156 l~~  158 (305)
T TIGR00635       156 LEF  158 (305)
T ss_pred             eCC
Confidence            654

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.33  E-value=0.00075  Score=84.96  Aligned_cols=134  Identities=16%  Similarity=0.134  Sum_probs=80.3

Q ss_pred             HHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccc---------cceeEEEecCCCCChhhcccccc
Q psy4730        1342 IQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKE---------FKTGYKIINPKSITMGQLYGEFD 1411 (1513)
Q Consensus      1342 ~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~ 1411 (1513)
                      .+....-+..|+.++.||+|+||||+.++++++++-..+. ..++..|         ...+++.+++.+           
T Consensus        29 ~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas-----------   97 (509)
T PRK14958         29 SNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAAS-----------   97 (509)
T ss_pred             HHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccc-----------
Confidence            3333444557899999999999999999999999742211 1111111         122334444321           


Q ss_pred             CCCCCCccCHHHHHHHHhh----ccC-CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecC
Q psy4730        1412 SASHEWRDGILAKTFREMA----VST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN 1486 (1513)
Q Consensus      1412 ~~t~eW~DG~l~~~lR~~~----~~~-~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~ 1486 (1513)
                            ..|+  .-+|+..    ..+ ....+.+|+|. +|-.=-+..|.+|.     +|-     ..|+++.|||-|+|
T Consensus        98 ------~~~v--~~iR~l~~~~~~~p~~~~~kV~iIDE-~~~ls~~a~naLLk-----~LE-----epp~~~~fIlattd  158 (509)
T PRK14958         98 ------RTKV--EDTRELLDNIPYAPTKGRFKVYLIDE-VHMLSGHSFNALLK-----TLE-----EPPSHVKFILATTD  158 (509)
T ss_pred             ------cCCH--HHHHHHHHHHhhccccCCcEEEEEEC-hHhcCHHHHHHHHH-----HHh-----ccCCCeEEEEEECC
Confidence                  1121  2234332    222 34679999995 22111244454441     111     14789999999999


Q ss_pred             CCCCCcchhhccEEEEeeC
Q psy4730        1487 LEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1487 l~~asPatvsRcg~v~~~~ 1505 (1513)
                      .....|...|||-.+.|.+
T Consensus       159 ~~kl~~tI~SRc~~~~f~~  177 (509)
T PRK14958        159 HHKLPVTVLSRCLQFHLAQ  177 (509)
T ss_pred             hHhchHHHHHHhhhhhcCC
Confidence            9999888899999988864

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=97.31  E-value=0.0016  Score=78.22  Aligned_cols=81  Identities=17%  Similarity=0.198  Sum_probs=54.7

Q ss_pred             hhccCCCCCccCCCCChHHHHHHHHhcCCcc---ccCC---ceeeeecceEEEEeecCCCCCCChhhhccce-EeecCCC
Q psy4730         891 LDDLNMPQKETYGAQPAVELLRQIIDHKHLY---DFQT---VTRVDLVDIIYITAMIPTMNTITGRLLRHMN-IISIDSF  963 (1513)
Q Consensus       891 ~dd~n~p~~~~~~~q~~le~lr~~~~~~~~y---d~~~---~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~-~~~~~~~  963 (1513)
                      +||++.-..      ...|.++.+++.....   +.+.   .....+-++.+++|++++. .+++.+.+||. .+.+++|
T Consensus       108 IDEi~~l~~------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~-~l~~~L~sRf~~~~~l~~~  180 (328)
T PRK00080        108 IDEIHRLSP------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAG-LLTSPLRDRFGIVQRLEFY  180 (328)
T ss_pred             EecHhhcch------HHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcc-cCCHHHHHhcCeeeecCCC
Confidence            388773321      2567788888754321   1111   1122344688899988764 57888999994 5899999


Q ss_pred             ChHHHHHHHHHHhhh
Q psy4730         964 NEATLSKIFTSVLDW  978 (1513)
Q Consensus       964 ~~~~l~~i~~~~l~~  978 (1513)
                      +.+++..|+......
T Consensus       181 ~~~e~~~il~~~~~~  195 (328)
T PRK00080        181 TVEELEKIVKRSARI  195 (328)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999976554

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.31  E-value=0.0012  Score=72.71  Aligned_cols=76  Identities=18%  Similarity=0.315  Sum_probs=48.2

Q ss_pred             hccCCCCCccCCCCChHHHHHHHHhcCCcc---c--cC-CceeeeecceEEEEeecCCCCCCChhhhccceEe-ecCCCC
Q psy4730         892 DDLNMPQKETYGAQPAVELLRQIIDHKHLY---D--FQ-TVTRVDLVDIIYITAMIPTMNTITGRLLRHMNII-SIDSFN  964 (1513)
Q Consensus       892 dd~n~p~~~~~~~q~~le~lr~~~~~~~~y---d--~~-~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~~-~~~~~~  964 (1513)
                      ||++--.+      ..-|.|=-.+|.|.+-   .  ++ ..-.+.+..+++++|+.-. ..+++-|..||-++ .+++.+
T Consensus       108 DEIHRlnk------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~-g~ls~pLrdRFgi~~~l~~Y~  180 (233)
T PF05496_consen  108 DEIHRLNK------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRA-GLLSSPLRDRFGIVLRLEFYS  180 (233)
T ss_dssp             CTCCC--H------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSG-CCTSHCCCTTSSEEEE----T
T ss_pred             echhhccH------HHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccc-cccchhHHhhcceecchhcCC
Confidence            88873332      2467888888876552   1  11 2245566789999998765 57899999999996 699999


Q ss_pred             hHHHHHHHHH
Q psy4730         965 EATLSKIFTS  974 (1513)
Q Consensus       965 ~~~l~~i~~~  974 (1513)
                      .+.|.+|...
T Consensus       181 ~~el~~Iv~r  190 (233)
T PF05496_consen  181 EEELAKIVKR  190 (233)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999975

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=97.29  E-value=0.0013  Score=79.00  Aligned_cols=119  Identities=17%  Similarity=0.246  Sum_probs=76.7

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
                      +++++.||||+|||++.+.++..++.              .+..++...+.               ..|.+..+++..  
T Consensus        52 ~~~ll~GppG~GKT~la~~ia~~l~~--------------~~~~~~~~~~~---------------~~~~l~~~l~~l--  100 (328)
T PRK00080         52 DHVLLYGPPGLGKTTLANIIANEMGV--------------NIRITSGPALE---------------KPGDLAAILTNL--  100 (328)
T ss_pred             CcEEEECCCCccHHHHHHHHHHHhCC--------------CeEEEeccccc---------------ChHHHHHHHHhc--
Confidence            47999999999999999999988752              12222211111               113344444433  


Q ss_pred             cCCCCceEEEEcC--CCChHHHHhhhcccCCCCcee-ecCCC-----eeecCCCCeEEEeecCCCCCCcchhhccEE-EE
Q psy4730        1432 STTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLC-LINGE-----IIKMSNTMNLIFECENLEFASPATVSRVGM-IY 1502 (1513)
Q Consensus      1432 ~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~-L~nGe-----~i~~~~~~~~iFE~~~l~~asPatvsRcg~-v~ 1502 (1513)
                         .....+++|.  .+.+..-|.+.+++++.+... +.+|.     ++.+| .+.++..|+.....+|+..||||+ +.
T Consensus       101 ---~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~-~~~li~at~~~~~l~~~L~sRf~~~~~  176 (328)
T PRK00080        101 ---EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP-PFTLIGATTRAGLLTSPLRDRFGIVQR  176 (328)
T ss_pred             ---ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCC-CceEEeecCCcccCCHHHHHhcCeeee
Confidence               2346888883  345556677888888775543 33332     23344 478899999888999999999986 45


Q ss_pred             eeC
Q psy4730        1503 FEL 1505 (1513)
Q Consensus      1503 ~~~ 1505 (1513)
                      +++
T Consensus       177 l~~  179 (328)
T PRK00080        177 LEF  179 (328)
T ss_pred             cCC
Confidence            554

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=97.28  E-value=0.00051  Score=83.78  Aligned_cols=45  Identities=20%  Similarity=0.248  Sum_probs=36.7

Q ss_pred             ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ++.+|+|+|.+ ..++|.++|  ||. .+.++.|+.+....|+..++..
T Consensus       284 ~v~VI~aTN~~-d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~  331 (398)
T PTZ00454        284 NVKVIMATNRA-DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK  331 (398)
T ss_pred             CEEEEEecCCc-hhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc
Confidence            57788998876 479999998  774 4899999999999999877654

>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A

Probab=97.27  E-value=0.0017  Score=73.37  Aligned_cols=123  Identities=19%  Similarity=0.247  Sum_probs=73.9

Q ss_pred             cccHHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhcccccc
Q psy4730        1332 QATDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFD 1411 (1513)
Q Consensus      1332 ~~~~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~ 1411 (1513)
                      ..||..-.--+.|-+++..+.|..+.||+|+|||.+++.|++++++              .+++.|+....--       
T Consensus        13 v~Tplt~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La~~lG~--------------~~~vfnc~~~~~~-------   71 (231)
T PF12774_consen   13 VITPLTDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLARALGR--------------FVVVFNCSEQMDY-------   71 (231)
T ss_dssp             ---HHHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCTT----------------EEEEETTSSS-H-------
T ss_pred             eechHHHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHhCC--------------eEEEecccccccH-------
Confidence            3344333334567778888899999999999999999999999985              5677776654321       


Q ss_pred             CCCCCCccCHHHHHHHHhhccCCCCceEEEEcC--CCChHHHHhh----h---ccc-CCCCceeecCCCeeecCCCCeEE
Q psy4730        1412 SASHEWRDGILAKTFREMAVSTTPDRKWIMFDG--PIDAVWIENM----N---TVL-DDNKKLCLINGEIIKMSNTMNLI 1481 (1513)
Q Consensus      1412 ~~t~eW~DG~l~~~lR~~~~~~~~~~~WivfDG--~~d~~wiE~L----N---svL-Ddn~~L~L~nGe~i~~~~~~~~i 1481 (1513)
                              ..+.++++=.++.    -.|.+||+  -++.+.+-.+    .   ..+ ...+..++ .|+.|++.+++.++
T Consensus        72 --------~~l~ril~G~~~~----GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~-~g~~i~l~~~~~iF  138 (231)
T PF12774_consen   72 --------QSLSRILKGLAQS----GAWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTL-EGQEIKLNPNCGIF  138 (231)
T ss_dssp             --------HHHHHHHHHHHHH----T-EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEE-TTCEEE--TT-EEE
T ss_pred             --------HHHHHHHHHHhhc----CchhhhhhhhhhhHHHHHHHHHHHHHHHHhhccccccccc-CCCEEEEccceeEE
Confidence                    2334555433321    38999994  5555433332    2   223 44566666 79999999998776


Q ss_pred             EeecCCCC
Q psy4730        1482 FECENLEF 1489 (1513)
Q Consensus      1482 FE~~~l~~ 1489 (1513)
                      . |.|-.+
T Consensus       139 i-T~np~y  145 (231)
T PF12774_consen  139 I-TMNPGY  145 (231)
T ss_dssp             E-EE-B-C
T ss_pred             E-eecccc
Confidence            6 444444

>PRK13342 recombination factor protein RarA; Reviewed

Probab=97.27  E-value=0.0013  Score=81.40  Aligned_cols=45  Identities=16%  Similarity=0.280  Sum_probs=35.9

Q ss_pred             eEEEEeecC-CCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         934 IIYITAMIP-TMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       934 ~~~~~a~~~-~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      +.+++|+.. +...+++.+++|+.++.+.+|+.+++..++...+..
T Consensus       121 iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~  166 (413)
T PRK13342        121 ITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALED  166 (413)
T ss_pred             EEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHH
Confidence            456666543 355789999999999999999999999998887654

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.25  E-value=0.0013  Score=82.98  Aligned_cols=128  Identities=16%  Similarity=0.123  Sum_probs=74.7

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccc---------cceeEEEecCCCCChhhccccccCCCCCCc
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWR 1418 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~ 1418 (1513)
                      ...|++++.||+|+||||+.+.+++.++--... ..++..|         ....+..++..+.                 
T Consensus        36 rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~-----------------   98 (546)
T PRK14957         36 KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASR-----------------   98 (546)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccc-----------------
Confidence            346789999999999999999999988632111 0111111         0112222222110                 


Q ss_pred             cCH--HHHHHHHhhcc-CCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcc
Q psy4730        1419 DGI--LAKTFREMAVS-TTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPA 1493 (1513)
Q Consensus      1419 DG~--l~~~lR~~~~~-~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPa 1493 (1513)
                      -|+  +-.++...... ....++-+|+|.  .+...-.+.|-..|++             .|+++.|||-|+|.....|+
T Consensus        99 ~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe-------------pp~~v~fIL~Ttd~~kil~t  165 (546)
T PRK14957         99 TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE-------------PPEYVKFILATTDYHKIPVT  165 (546)
T ss_pred             cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc-------------CCCCceEEEEECChhhhhhh
Confidence            111  11222222211 234678899995  2233233333334443             36789999999998888888


Q ss_pred             hhhccEEEEeeCC
Q psy4730        1494 TVSRVGMIYFELK 1506 (1513)
Q Consensus      1494 tvsRcg~v~~~~~ 1506 (1513)
                      ..|||-++.|.+-
T Consensus       166 I~SRc~~~~f~~L  178 (546)
T PRK14957        166 ILSRCIQLHLKHI  178 (546)
T ss_pred             HHHheeeEEeCCC
Confidence            8999999998764

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=97.25  E-value=0.0016  Score=69.75  Aligned_cols=143  Identities=23%  Similarity=0.217  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhccccc---------ccceeEEEecCCCCChhhc
Q psy4730        1336 WYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMK---------EFKTGYKIINPKSITMGQL 1406 (1513)
Q Consensus      1336 ~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~---------~~~~~~~~inp~~~t~~eL 1406 (1513)
                      ..+....++++.-...|+.++.||+|+||+++...+++.+.--.....++..         ....+++.++|..-..   
T Consensus         4 ~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~---   80 (162)
T PF13177_consen    4 EIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK---   80 (162)
T ss_dssp             HHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS---
T ss_pred             HHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc---
Confidence            3445555566555667899999999999999999999987543222111111         1123344444432210   


Q ss_pred             cccccCCCCCCccCHHHHHHHHhh----ccC-CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEE
Q psy4730        1407 YGEFDSASHEWRDGILAKTFREMA----VST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLI 1481 (1513)
Q Consensus      1407 ~G~~~~~t~eW~DG~l~~~lR~~~----~~~-~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~i 1481 (1513)
                               ..    -..-+|+..    ..+ ....+-+|+|. +|..=.++-|++|   |.|=       ..|+++.+|
T Consensus        81 ---------~i----~i~~ir~i~~~~~~~~~~~~~KviiI~~-ad~l~~~a~NaLL---K~LE-------epp~~~~fi  136 (162)
T PF13177_consen   81 ---------SI----KIDQIREIIEFLSLSPSEGKYKVIIIDE-ADKLTEEAQNALL---KTLE-------EPPENTYFI  136 (162)
T ss_dssp             ---------SB----SHHHHHHHHHHCTSS-TTSSSEEEEEET-GGGS-HHHHHHHH---HHHH-------STTTTEEEE
T ss_pred             ---------hh----hHHHHHHHHHHHHHHHhcCCceEEEeeh-HhhhhHHHHHHHH---HHhc-------CCCCCEEEE
Confidence                     11    123344432    222 24678899986 3333346666665   1111       136799999


Q ss_pred             EeecCCCCCCcchhhccEEEEeeC
Q psy4730        1482 FECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1482 FE~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
                      +-+++....-|.-.|||-.|++.+
T Consensus       137 L~t~~~~~il~TI~SRc~~i~~~~  160 (162)
T PF13177_consen  137 LITNNPSKILPTIRSRCQVIRFRP  160 (162)
T ss_dssp             EEES-GGGS-HHHHTTSEEEEE--
T ss_pred             EEECChHHChHHHHhhceEEecCC
Confidence            999999999999999999999976

...

>CHL00195 ycf46 Ycf46; Provisional

Probab=97.25  E-value=0.00046  Score=86.01  Aligned_cols=46  Identities=17%  Similarity=0.174  Sum_probs=38.6

Q ss_pred             ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      .+.++||+|.+. .++|.++|  ||. .++++.|+.+.-..||..++...
T Consensus       360 ~V~vIaTTN~~~-~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~  408 (489)
T CHL00195        360 PVFVVATANNID-LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKF  408 (489)
T ss_pred             ceEEEEecCChh-hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhc
Confidence            567888888764 69999998  885 58999999999999999988663

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.23  E-value=0.00092  Score=84.25  Aligned_cols=127  Identities=15%  Similarity=0.114  Sum_probs=76.2

Q ss_pred             HHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhh-cccccc---------cceeEEEecCCCCChhhccccccCCCCC
Q psy4730        1347 MILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-SATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHE 1416 (1513)
Q Consensus      1347 ~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~-~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~e 1416 (1513)
                      .-+..|++++.||+|+||||+.+++|++++-..+.. .++..|         ....+..+|+.+              + 
T Consensus        33 ~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs--------------~-   97 (702)
T PRK14960         33 RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAAS--------------R-   97 (702)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccc--------------c-
Confidence            334468999999999999999999999987322110 111111         112223333221              1 


Q ss_pred             CccCHHHHHHHHhh----ccC-CCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCC
Q psy4730        1417 WRDGILAKTFREMA----VST-TPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEF 1489 (1513)
Q Consensus      1417 W~DG~l~~~lR~~~----~~~-~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~ 1489 (1513)
                        .|+  .-+|+..    ..+ ..+.+-+|+|.  -+++.-...|-..|++             .|+++.|||-+++...
T Consensus        98 --~~V--ddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE-------------PP~~v~FILaTtd~~k  160 (702)
T PRK14960         98 --TKV--EDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE-------------PPEHVKFLFATTDPQK  160 (702)
T ss_pred             --CCH--HHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-------------CCCCcEEEEEECChHh
Confidence              121  2233332    111 24568899995  2344333444444333             4578899999999888


Q ss_pred             CCcchhhccEEEEeeC
Q psy4730        1490 ASPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1490 asPatvsRcg~v~~~~ 1505 (1513)
                      ..|+.+|||..+.|.+
T Consensus       161 Ip~TIlSRCq~feFkp  176 (702)
T PRK14960        161 LPITVISRCLQFTLRP  176 (702)
T ss_pred             hhHHHHHhhheeeccC
Confidence            8777789999998865

>PLN03025 replication factor C subunit; Provisional

Probab=97.22  E-value=0.00096  Score=79.70  Aligned_cols=117  Identities=19%  Similarity=0.254  Sum_probs=69.9

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
                      +.+++.||||+||||+.+++++.+..-.         ....+.-+|+.     +..|          -.++-..++..+.
T Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l~~~~---------~~~~~~eln~s-----d~~~----------~~~vr~~i~~~~~   90 (319)
T PLN03025         35 PNLILSGPPGTGKTTSILALAHELLGPN---------YKEAVLELNAS-----DDRG----------IDVVRNKIKMFAQ   90 (319)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHhccc---------Cccceeeeccc-----cccc----------HHHHHHHHHHHHh
Confidence            3589999999999999999998874200         00111222321     1111          1122333333332


Q ss_pred             cC----CCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeC
Q psy4730        1432 ST----TPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1432 ~~----~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
                      ..    ....+.+++|.  .+...--..|...++.             .+++++++|-+.+.....|+-.|||.++.|.+
T Consensus        91 ~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~-------------~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~  157 (319)
T PLN03025         91 KKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEI-------------YSNTTRFALACNTSSKIIEPIQSRCAIVRFSR  157 (319)
T ss_pred             ccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhc-------------ccCCceEEEEeCCccccchhHHHhhhcccCCC
Confidence            21    23568899993  2333334455444431             24567788888788888899999999988865

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.18  E-value=0.0023  Score=66.08  Aligned_cols=27  Identities=30%  Similarity=0.502  Sum_probs=24.1

Q ss_pred             CCccceeccCCCccchHhHHHHHhccC
Q psy4730         728 NDVPMMFVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       728 ~~~~~ll~G~~g~GKt~~v~~~~~~~~  754 (1513)
                      .+.+++++||+|||||++++.+...+.
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            478999999999999999999988764

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.17  E-value=0.0014  Score=81.50  Aligned_cols=129  Identities=14%  Similarity=0.175  Sum_probs=80.7

Q ss_pred             HHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhh-ccccc---------ccceeEEEecCCCCChhhccccccCC
Q psy4730        1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-SATMK---------EFKTGYKIINPKSITMGQLYGEFDSA 1413 (1513)
Q Consensus      1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~-~~~~~---------~~~~~~~~inp~~~t~~eL~G~~~~~ 1413 (1513)
                      .+..-+..|+.++.||+|+||||+.+++|++++-..+.. .++..         ....++.-+|+.+.+           
T Consensus        28 a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~-----------   96 (491)
T PRK14964         28 AFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNT-----------   96 (491)
T ss_pred             HHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCC-----------
Confidence            333334467999999999999999999999987432211 11111         123344555554221           


Q ss_pred             CCCCccCHHHHHHHHhh----ccC-CCCceEEEEcCCCChHHHHhhhccc---CCCCceeecCCCeeecCCCCeEEEeec
Q psy4730        1414 SHEWRDGILAKTFREMA----VST-TPDRKWIMFDGPIDAVWIENMNTVL---DDNKKLCLINGEIIKMSNTMNLIFECE 1485 (1513)
Q Consensus      1414 t~eW~DG~l~~~lR~~~----~~~-~~~~~WivfDG~~d~~wiE~LNsvL---Ddn~~L~L~nGe~i~~~~~~~~iFE~~ 1485 (1513)
                            |+  .-+|+..    ..+ ....+.+|+|. +|-.--+..|.+|   ++             .|+++.+||.++
T Consensus        97 ------~v--ddIR~Iie~~~~~P~~~~~KVvIIDE-ah~Ls~~A~NaLLK~LEe-------------Pp~~v~fIlatt  154 (491)
T PRK14964         97 ------SV--DDIKVILENSCYLPISSKFKVYIIDE-VHMLSNSAFNALLKTLEE-------------PAPHVKFILATT  154 (491)
T ss_pred             ------CH--HHHHHHHHHHHhccccCCceEEEEeC-hHhCCHHHHHHHHHHHhC-------------CCCCeEEEEEeC
Confidence                  21  2233321    111 34679999996 2222224455443   32             467899999999


Q ss_pred             CCCCCCcchhhccEEEEeeC
Q psy4730        1486 NLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1486 ~l~~asPatvsRcg~v~~~~ 1505 (1513)
                      +.....|+-.|||-.+.|.+
T Consensus       155 e~~Kl~~tI~SRc~~~~f~~  174 (491)
T PRK14964        155 EVKKIPVTIISRCQRFDLQK  174 (491)
T ss_pred             ChHHHHHHHHHhheeeeccc
Confidence            99999999999999998865

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.17  E-value=0.001  Score=76.77  Aligned_cols=60  Identities=20%  Similarity=0.143  Sum_probs=40.4

Q ss_pred             HHHHHHHHhcCCccccCCceeeeecceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhhh
Q psy4730         908 VELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       908 le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      +|||.|+   .||-.+        .|+..|+|+|-+- .++|.++|  ||- .+-++.|+.+.-..||.-.-+.|
T Consensus       276 leLL~ql---DGFD~~--------~nvKVI~ATNR~D-~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM  338 (406)
T COG1222         276 LELLNQL---DGFDPR--------GNVKVIMATNRPD-ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM  338 (406)
T ss_pred             HHHHHhc---cCCCCC--------CCeEEEEecCCcc-ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc
Confidence            6777765   455433        3788899998652 35666664  332 37889999998888887765544

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=97.16  E-value=0.00082  Score=82.27  Aligned_cols=46  Identities=17%  Similarity=0.182  Sum_probs=37.7

Q ss_pred             ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      ++.+|+|+|.+ ..+++.++|  ||. .+.++.|+.+....|+..++..+
T Consensus       270 ~v~VI~aTn~~-~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~  318 (389)
T PRK03992        270 NVKIIAATNRI-DILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM  318 (389)
T ss_pred             CEEEEEecCCh-hhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccC
Confidence            67889999887 468898887  774 59999999999999998776543

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.16  E-value=0.00039  Score=74.90  Aligned_cols=40  Identities=23%  Similarity=0.307  Sum_probs=31.3

Q ss_pred             cceeccCCCccchHhHHHHHhccC-cCcccceeeccccccC
Q psy4730         731 PMMFVGPTGTGKSTIVLNLLLNLS-KDKYLPNIINFSARTS  770 (1513)
Q Consensus       731 ~~ll~G~~g~GKt~~v~~~~~~~~-~~~~~~~~~~fs~~t~  770 (1513)
                      .+||+||+|||||.+++.+...+. ++.-....++++..+.
T Consensus         5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~   45 (171)
T PF07724_consen    5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE   45 (171)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence            578999999999999999988776 4444555677777665

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>CHL00176 ftsH cell division protein; Validated

Probab=97.14  E-value=0.001  Score=85.71  Aligned_cols=45  Identities=18%  Similarity=0.151  Sum_probs=36.7

Q ss_pred             ceEEEEeecCCCCCCChhhhc--cc-eEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLR--HM-NIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~--~f-~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ++.++||+|.+. .++|+++|  || ..+.++.|+.+....|+..++..
T Consensus       321 ~ViVIaaTN~~~-~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~  368 (638)
T CHL00176        321 GVIVIAATNRVD-ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN  368 (638)
T ss_pred             CeeEEEecCchH-hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh
Confidence            678899998874 47788887  56 46999999999999999987765

>KOG0738|consensus

Probab=97.14  E-value=0.0011  Score=77.00  Aligned_cols=45  Identities=18%  Similarity=0.133  Sum_probs=37.9

Q ss_pred             eEEEEeecCCCCCCChhhhccceE-eecCCCChHHHHHHHHHHhhhh
Q psy4730         934 IIYITAMIPTMNTITGRLLRHMNI-ISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       934 ~~~~~a~~~~~~~~~~r~~~~f~~-~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      ++.+||+|-|+ +|+..|+|||-= |||+-|+.+.-...+.-.|+..
T Consensus       353 VmVLAATN~PW-diDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~  398 (491)
T KOG0738|consen  353 VMVLAATNFPW-DIDEALRRRLEKRIYIPLPDAEARSALIKILLRSV  398 (491)
T ss_pred             EEEEeccCCCc-chHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccc
Confidence            56779999887 699999999986 9999999999888888766653

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=97.14  E-value=0.0023  Score=75.12  Aligned_cols=42  Identities=17%  Similarity=0.301  Sum_probs=36.3

Q ss_pred             ceEEEEeec-CCCCCCChhhhccceEeecCCCChHHHHHHHHH
Q psy4730         933 DIIYITAMI-PTMNTITGRLLRHMNIISIDSFNEATLSKIFTS  974 (1513)
Q Consensus       933 ~~~~~~a~~-~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~  974 (1513)
                      .+.+|||+- +|-..+.|.+++|-.++.+.+.+.+++.++...
T Consensus       132 ~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~r  174 (436)
T COG2256         132 TIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKR  174 (436)
T ss_pred             eEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHH
Confidence            466776655 468899999999999999999999999999887

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=97.13  E-value=0.0005  Score=80.56  Aligned_cols=45  Identities=11%  Similarity=0.018  Sum_probs=34.5

Q ss_pred             cceEEEEeecCCCCCCChhhhc--cceEeecCCCChHHHHHHHHHHhhh
Q psy4730         932 VDIIYITAMIPTMNTITGRLLR--HMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       932 ~~~~~~~a~~~~~~~~~~r~~~--~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ..+.+|+|.|-| ..|+|.|+|  ||-.++ .-|+.++...|+..+++.
T Consensus       267 ~~V~VIaTTNrp-d~LDpALlRpGRfDk~i-~lPd~e~R~eIL~~~~r~  313 (413)
T PLN00020        267 PRVPIIVTGNDF-STLYAPLIRDGRMEKFY-WAPTREDRIGVVHGIFRD  313 (413)
T ss_pred             CCceEEEeCCCc-ccCCHhHcCCCCCCcee-CCCCHHHHHHHHHHHhcc
Confidence            457778887654 358999999  887754 579999999999887654

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.12  E-value=0.0025  Score=79.47  Aligned_cols=44  Identities=9%  Similarity=0.266  Sum_probs=35.4

Q ss_pred             eEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         934 IIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       934 ~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      +.+++|++.+. .+++++.+|+.++.+.+|+.+++..+...++..
T Consensus       148 vv~Ilattn~~-kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~  191 (472)
T PRK14962        148 VVFVLATTNLE-KVPPTIISRCQVIEFRNISDELIIKRLQEVAEA  191 (472)
T ss_pred             EEEEEEeCChH-hhhHHHhcCcEEEEECCccHHHHHHHHHHHHHH
Confidence            45565655433 689999999999999999999999988887643

>KOG0744|consensus

Probab=97.12  E-value=0.00085  Score=76.02  Aligned_cols=48  Identities=15%  Similarity=0.206  Sum_probs=35.5

Q ss_pred             EEEEeecCCCCCCChhhhccceE-eecCCCChHHHHHHHHHHhhhhhhc
Q psy4730         935 IYITAMIPTMNTITGRLLRHMNI-ISIDSFNEATLSKIFTSVLDWHFSK  982 (1513)
Q Consensus       935 ~~~~a~~~~~~~~~~r~~~~f~~-~~~~~~~~~~l~~i~~~~l~~~~~~  982 (1513)
                      .++.|+.+-..+|+..|.-|--+ .|+.+|+.+.+..||.+-+..+...
T Consensus       298 vliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~  346 (423)
T KOG0744|consen  298 VLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISS  346 (423)
T ss_pred             EEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhc
Confidence            34445555556677777776665 8999999999999999977765543

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.11  E-value=0.0021  Score=83.55  Aligned_cols=126  Identities=13%  Similarity=0.102  Sum_probs=75.0

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccc---------cceeEEEecCCCCChhhccccccCCCCCCc
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWR 1418 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~ 1418 (1513)
                      +..|..++.||+|+||||+.+++++.++--... ..++..|         ....+..+++.+                 .
T Consensus        36 rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas-----------------~   98 (944)
T PRK14949         36 RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAAS-----------------R   98 (944)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEecccc-----------------c
Confidence            346889999999999999999999998632110 0111111         011111122211                 1


Q ss_pred             cCHHHHHHHHhh----ccC-CCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCC
Q psy4730        1419 DGILAKTFREMA----VST-TPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFAS 1491 (1513)
Q Consensus      1419 DG~l~~~lR~~~----~~~-~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~as 1491 (1513)
                      .|+  ..+|+..    ..+ ....+-||+|.  -+...-.+.|-..|++             .|++++||+-+++.....
T Consensus        99 ~kV--DdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE-------------PP~~vrFILaTTe~~kLl  163 (944)
T PRK14949         99 TKV--DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE-------------PPEHVKFLLATTDPQKLP  163 (944)
T ss_pred             cCH--HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-------------cCCCeEEEEECCCchhch
Confidence            221  2233322    111 24678899994  3344333444334443             367899999999999998


Q ss_pred             cchhhccEEEEeeCC
Q psy4730        1492 PATVSRVGMIYFELK 1506 (1513)
Q Consensus      1492 PatvsRcg~v~~~~~ 1506 (1513)
                      |+..|||-.+.|.+-
T Consensus       164 ~TIlSRCq~f~fkpL  178 (944)
T PRK14949        164 VTVLSRCLQFNLKSL  178 (944)
T ss_pred             HHHHHhheEEeCCCC
Confidence            888999999887653

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=97.10  E-value=0.0021  Score=80.57  Aligned_cols=126  Identities=16%  Similarity=0.168  Sum_probs=74.3

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhc-----ccccc---------cceeEEEecCCCCChhhccccccCCCC
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKS-----ATMKE---------FKTGYKIINPKSITMGQLYGEFDSASH 1415 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~-----~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~ 1415 (1513)
                      ..|++++.||+|+||||+.++++++++-......     ++..|         ....+.-+++.              ++
T Consensus        42 i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaa--------------s~  107 (507)
T PRK06645         42 LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAA--------------SK  107 (507)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeecc--------------CC
Confidence            3579999999999999999999999974321100     01111         11122222221              11


Q ss_pred             CCccCHHHHHHHHhh----cc-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCC
Q psy4730        1416 EWRDGILAKTFREMA----VS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFA 1490 (1513)
Q Consensus      1416 eW~DG~l~~~lR~~~----~~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~a 1490 (1513)
                         -|+  .-+|+..    .. .....+-+|+|.. +-.--+.+|.+|.-     |.     ..|+++.|||-|++....
T Consensus       108 ---~~v--d~Ir~iie~a~~~P~~~~~KVvIIDEa-~~Ls~~a~naLLk~-----LE-----epp~~~vfI~aTte~~kI  171 (507)
T PRK06645        108 ---TSV--DDIRRIIESAEYKPLQGKHKIFIIDEV-HMLSKGAFNALLKT-----LE-----EPPPHIIFIFATTEVQKI  171 (507)
T ss_pred             ---CCH--HHHHHHHHHHHhccccCCcEEEEEECh-hhcCHHHHHHHHHH-----Hh-----hcCCCEEEEEEeCChHHh
Confidence               121  2233321    11 1246688999962 22112445554421     11     147889999999999999


Q ss_pred             CcchhhccEEEEeeC
Q psy4730        1491 SPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1491 sPatvsRcg~v~~~~ 1505 (1513)
                      .|+..|||..+.|.+
T Consensus       172 ~~tI~SRc~~~ef~~  186 (507)
T PRK06645        172 PATIISRCQRYDLRR  186 (507)
T ss_pred             hHHHHhcceEEEccC
Confidence            888899999888765

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=97.10  E-value=0.0014  Score=83.41  Aligned_cols=134  Identities=20%  Similarity=0.196  Sum_probs=73.7

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHHHhHhhhh-cccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHH
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-SATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFR 1427 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~-~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR 1427 (1513)
                      +..|++++.||+|+||||+.++|+++++--.... .++..|.  .+..++...+  -+++ .+|.   ....|+  ..+|
T Consensus        36 rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~--sCr~i~~g~~--~Dvl-Eida---As~~gV--d~IR  105 (709)
T PRK08691         36 RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ--SCTQIDAGRY--VDLL-EIDA---ASNTGI--DNIR  105 (709)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH--HHHHHhccCc--cceE-EEec---cccCCH--HHHH
Confidence            3468999999999999999999999986321110 0011000  0011111100  0111 1121   122332  3344


Q ss_pred             Hhhc----c-CCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEE
Q psy4730        1428 EMAV----S-TTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGM 1500 (1513)
Q Consensus      1428 ~~~~----~-~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~ 1500 (1513)
                      +...    . .....+.+|+|.  .++..-...|-..|++             .|+++.|||-+.+.....|..+|||-.
T Consensus       106 elle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEE-------------Pp~~v~fILaTtd~~kL~~TIrSRC~~  172 (709)
T PRK08691        106 EVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE-------------PPEHVKFILATTDPHKVPVTVLSRCLQ  172 (709)
T ss_pred             HHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHh-------------CCCCcEEEEEeCCccccchHHHHHHhh
Confidence            4322    1 124678999996  2233222222222332             467899999999999998888999977


Q ss_pred             EEeeC
Q psy4730        1501 IYFEL 1505 (1513)
Q Consensus      1501 v~~~~ 1505 (1513)
                      +.|.+
T Consensus       173 f~f~~  177 (709)
T PRK08691        173 FVLRN  177 (709)
T ss_pred             hhcCC
Confidence            76543

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=97.09  E-value=0.0017  Score=85.64  Aligned_cols=83  Identities=20%  Similarity=0.349  Sum_probs=60.3

Q ss_pred             hhccCCCCCccCCCCChHHHHHHHHhcC---CccccCCceeeeecceEEEEeecCCCCCCChhhhccceEeecCCCChHH
Q psy4730         891 LDDLNMPQKETYGAQPAVELLRQIIDHK---HLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEAT  967 (1513)
Q Consensus       891 ~dd~n~p~~~~~~~q~~le~lr~~~~~~---~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~  967 (1513)
                      +||+....++..|  .|...|-+++|-+   .|-|.---......++.|||+.|+.  .|||.|+.||.++.+.+++.+.
T Consensus       422 lDEidk~~~~~~g--~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~--~i~~aLl~R~~ii~~~~~t~ee  497 (784)
T PRK10787        422 LDEIDKMSSDMRG--DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM--NIPAPLLDRMEVIRLSGYTEDE  497 (784)
T ss_pred             EEChhhcccccCC--CHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC--CCCHHHhcceeeeecCCCCHHH
Confidence            3888866555443  3666777777742   3333322223556788899877664  5999999999999999999999


Q ss_pred             HHHHHHHHhh
Q psy4730         968 LSKIFTSVLD  977 (1513)
Q Consensus       968 l~~i~~~~l~  977 (1513)
                      +..|...+|.
T Consensus       498 k~~Ia~~~L~  507 (784)
T PRK10787        498 KLNIAKRHLL  507 (784)
T ss_pred             HHHHHHHhhh
Confidence            9999998874

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=97.09  E-value=0.0039  Score=74.05  Aligned_cols=80  Identities=18%  Similarity=0.264  Sum_probs=52.6

Q ss_pred             hhccCCCCCccCCCCChHHHHHHHHhcCCcc---ccC---CceeeeecceEEEEeecCCCCCCChhhhccceE-eecCCC
Q psy4730         891 LDDLNMPQKETYGAQPAVELLRQIIDHKHLY---DFQ---TVTRVDLVDIIYITAMIPTMNTITGRLLRHMNI-ISIDSF  963 (1513)
Q Consensus       891 ~dd~n~p~~~~~~~q~~le~lr~~~~~~~~y---d~~---~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~-~~~~~~  963 (1513)
                      +||++.-..      ...|.|+.+++.+..-   +.+   .........+.++++++.+ ..+++.+.+||.. +.+++|
T Consensus        87 iDEi~~l~~------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~-~~l~~~l~sR~~~~~~l~~l  159 (305)
T TIGR00635        87 IDEIHRLSP------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA-GMLTSPLRDRFGIILRLEFY  159 (305)
T ss_pred             EehHhhhCH------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc-cccCHHHHhhcceEEEeCCC
Confidence            488873322      2467788887754321   111   0111223357788888776 4578889999954 689999


Q ss_pred             ChHHHHHHHHHHhh
Q psy4730         964 NEATLSKIFTSVLD  977 (1513)
Q Consensus       964 ~~~~l~~i~~~~l~  977 (1513)
                      +.+++..|+.....
T Consensus       160 ~~~e~~~il~~~~~  173 (305)
T TIGR00635       160 TVEELAEIVSRSAG  173 (305)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999987665

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.08  E-value=0.0017  Score=81.68  Aligned_cols=140  Identities=18%  Similarity=0.191  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhh------hcccccc---------cceeEEEecCCCC
Q psy4730        1337 YIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK------KSATMKE---------FKTGYKIINPKSI 1401 (1513)
Q Consensus      1337 ~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~------~~~~~~~---------~~~~~~~inp~~~ 1401 (1513)
                      .+..+.+.+..-+..|..++.||+|+||||+.+.|++.++-....      ...+..|         ...++..|++.+ 
T Consensus        24 vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas-  102 (700)
T PRK12323         24 VVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAAS-  102 (700)
T ss_pred             HHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccc-
Confidence            333344444444557899999999999999999999999732110      0011111         111223333321 


Q ss_pred             ChhhccccccCCCCCCccCHHHHHHHHhh----cc-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCC
Q psy4730        1402 TMGQLYGEFDSASHEWRDGILAKTFREMA----VS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSN 1476 (1513)
Q Consensus      1402 t~~eL~G~~~~~t~eW~DG~l~~~lR~~~----~~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~ 1476 (1513)
                                      .-|+  .-+|+..    .. .....+-+|+|. +|-.=-+..|.+|.     +|-.     .|+
T Consensus       103 ----------------~~gV--DdIReLie~~~~~P~~gr~KViIIDE-ah~Ls~~AaNALLK-----TLEE-----PP~  153 (700)
T PRK12323        103 ----------------NRGV--DEMAQLLDKAVYAPTAGRFKVYMIDE-VHMLTNHAFNAMLK-----TLEE-----PPE  153 (700)
T ss_pred             ----------------cCCH--HHHHHHHHHHHhchhcCCceEEEEEC-hHhcCHHHHHHHHH-----hhcc-----CCC
Confidence                            1222  2233332    22 234568899995 22222356666662     1111     467


Q ss_pred             CCeEEEeecCCCCCCcchhhccEEEEeeCC
Q psy4730        1477 TMNLIFECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1477 ~~~~iFE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
                      ++.|||-|++.....|...|||-.+.|.+-
T Consensus       154 ~v~FILaTtep~kLlpTIrSRCq~f~f~~l  183 (700)
T PRK12323        154 HVKFILATTDPQKIPVTVLSRCLQFNLKQM  183 (700)
T ss_pred             CceEEEEeCChHhhhhHHHHHHHhcccCCC
Confidence            899999999999999999999999887653

>KOG0733|consensus

Probab=97.08  E-value=0.0012  Score=80.30  Aligned_cols=78  Identities=15%  Similarity=0.238  Sum_probs=56.5

Q ss_pred             hccC--CCCCccCCCCChHHHHHHHHhc-CCccccCCceeeeecceEEEEeecCCCCCCChhhhc---cceEeecCCCCh
Q psy4730         892 DDLN--MPQKETYGAQPAVELLRQIIDH-KHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLR---HMNIISIDSFNE  965 (1513)
Q Consensus       892 dd~n--~p~~~~~~~q~~le~lr~~~~~-~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~---~f~~~~~~~~~~  965 (1513)
                      |++-  .|..++-|+...--++.||+.. .|.-++        ..+.+|||+|-|-. |+|.++|   .=.++|++.|+.
T Consensus       611 DEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R--------~gV~viaATNRPDi-IDpAiLRPGRlDk~LyV~lPn~  681 (802)
T KOG0733|consen  611 DEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEER--------RGVYVIAATNRPDI-IDPAILRPGRLDKLLYVGLPNA  681 (802)
T ss_pred             cchhhcCcccCCCCchhHHHHHHHHHHHhcccccc--------cceEEEeecCCCcc-cchhhcCCCccCceeeecCCCH
Confidence            6665  6777777777777888888874 566555        36788899997632 5666663   235799999999


Q ss_pred             HHHHHHHHHHhhh
Q psy4730         966 ATLSKIFTSVLDW  978 (1513)
Q Consensus       966 ~~l~~i~~~~l~~  978 (1513)
                      ++--.|...+.++
T Consensus       682 ~eR~~ILK~~tkn  694 (802)
T KOG0733|consen  682 EERVAILKTITKN  694 (802)
T ss_pred             HHHHHHHHHHhcc
Confidence            9988888887664

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=97.07  E-value=0.0021  Score=76.73  Aligned_cols=112  Identities=19%  Similarity=0.171  Sum_probs=71.0

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
                      .+.+++.||+|+|||++.+.+++.++              ..+..+|+.. .             . .+.+ ...+.+..
T Consensus        43 ~~~lll~G~~G~GKT~la~~l~~~~~--------------~~~~~i~~~~-~-------------~-~~~i-~~~l~~~~   92 (316)
T PHA02544         43 PNMLLHSPSPGTGKTTVAKALCNEVG--------------AEVLFVNGSD-C-------------R-IDFV-RNRLTRFA   92 (316)
T ss_pred             CeEEEeeCcCCCCHHHHHHHHHHHhC--------------ccceEeccCc-c-------------c-HHHH-HHHHHHHH
Confidence            45677799999999999999987653              1234556543 1             0 1111 11122221


Q ss_pred             cc--CCCCceEEEEcCC--C-ChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeC
Q psy4730        1431 VS--TTPDRKWIMFDGP--I-DAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1431 ~~--~~~~~~WivfDG~--~-d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
                      ..  .....+-+|+|..  + ++...+.|.+.++.             .++++++++.+.+.....|+..|||..+.++.
T Consensus        93 ~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~-------------~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~  159 (316)
T PHA02544         93 STVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEA-------------YSKNCSFIITANNKNGIIEPLRSRCRVIDFGV  159 (316)
T ss_pred             HhhcccCCCeEEEEECcccccCHHHHHHHHHHHHh-------------cCCCceEEEEcCChhhchHHHHhhceEEEeCC
Confidence            11  1134577888862  2 34455666666653             24678899988888889999999999998843

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.05  E-value=0.0024  Score=81.47  Aligned_cols=140  Identities=15%  Similarity=0.165  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhh------cccccc---------cceeEEEecCCC
Q psy4730        1336 WYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK------SATMKE---------FKTGYKIINPKS 1400 (1513)
Q Consensus      1336 ~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~------~~~~~~---------~~~~~~~inp~~ 1400 (1513)
                      ..+..+.+.+..-+..|..++.||+|+||||+.++|+++++-.+...      .+++.|         ...++..+|+. 
T Consensus        23 ~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaa-  101 (618)
T PRK14951         23 HVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAA-  101 (618)
T ss_pred             HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcc-
Confidence            33333444444445578999999999999999999999997422110      011111         11122222221 


Q ss_pred             CChhhccccccCCCCCCccCHHHHHHHHhh----ccC-CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecC
Q psy4730        1401 ITMGQLYGEFDSASHEWRDGILAKTFREMA----VST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMS 1475 (1513)
Q Consensus      1401 ~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~----~~~-~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~ 1475 (1513)
                                      -..|+  .-+|+..    ..+ ....+.+|+|. +|-.=-+..|.+|   |.  |-+     .|
T Consensus       102 ----------------s~~~V--d~iReli~~~~~~p~~g~~KV~IIDE-vh~Ls~~a~NaLL---Kt--LEE-----PP  152 (618)
T PRK14951        102 ----------------SNRGV--DEVQQLLEQAVYKPVQGRFKVFMIDE-VHMLTNTAFNAML---KT--LEE-----PP  152 (618)
T ss_pred             ----------------cccCH--HHHHHHHHHHHhCcccCCceEEEEEC-hhhCCHHHHHHHH---Hh--ccc-----CC
Confidence                            11232  2234332    222 24578999995 2222234556555   11  111     46


Q ss_pred             CCCeEEEeecCCCCCCcchhhccEEEEeeC
Q psy4730        1476 NTMNLIFECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1476 ~~~~~iFE~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
                      +++.|||-|+|....-|+..|||-.+.|.+
T Consensus       153 ~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~  182 (618)
T PRK14951        153 EYLKFVLATTDPQKVPVTVLSRCLQFNLRP  182 (618)
T ss_pred             CCeEEEEEECCchhhhHHHHHhceeeecCC
Confidence            788999999999999889999999998865

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=97.05  E-value=0.0015  Score=81.71  Aligned_cols=44  Identities=18%  Similarity=0.194  Sum_probs=35.5

Q ss_pred             EEEEeecCC--CCCCChhhhccc---eEeecCCCChHHHHHHHHHHhhh
Q psy4730         935 IYITAMIPT--MNTITGRLLRHM---NIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       935 ~~~~a~~~~--~~~~~~r~~~~f---~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+++|..||  -..+.+|+.+||   .++.+.+|+.+++..|.......
T Consensus       247 iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~  295 (450)
T PRK00149        247 IVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE  295 (450)
T ss_pred             EEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence            355666666  345899999999   47999999999999999987764

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=97.03  E-value=0.0053  Score=78.13  Aligned_cols=47  Identities=15%  Similarity=0.092  Sum_probs=40.8

Q ss_pred             cceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         932 VDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       932 ~~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .|+.+++|++..-..++|.+++|+..+.+++++.+++..|....+..
T Consensus       232 ~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k  278 (531)
T TIGR02902       232 ADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEK  278 (531)
T ss_pred             cceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHH
Confidence            48899988887656799999999999999999999999999987654

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.01  E-value=0.0012  Score=67.54  Aligned_cols=23  Identities=39%  Similarity=0.683  Sum_probs=20.8

Q ss_pred             ceeccCCCccchHhHHHHHhccC
Q psy4730         732 MMFVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       732 ~ll~G~~g~GKt~~v~~~~~~~~  754 (1513)
                      +||.||+|||||++++.+.+.+.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~   23 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG   23 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc
Confidence            68999999999999999998763

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK09862 putative ATP-dependent protease; Provisional

Probab=96.99  E-value=0.0019  Score=80.58  Aligned_cols=75  Identities=19%  Similarity=0.292  Sum_probs=59.5

Q ss_pred             HHHhhccCCCCCccCCCCChHHHHHHHHhcCCcc-ccCCceeeeecceEEEEeecCCC--------------------CC
Q psy4730         888 EMILDDLNMPQKETYGAQPAVELLRQIIDHKHLY-DFQTVTRVDLVDIIYITAMIPTM--------------------NT  946 (1513)
Q Consensus       888 ~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~y-d~~~~~~~~~~~~~~~~a~~~~~--------------------~~  946 (1513)
                      .+|+||++-...      ..++.||+.++.|.++ ++.......-.+++++|||||.-                    ..
T Consensus       297 vLfLDEi~e~~~------~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~  370 (506)
T PRK09862        297 VLFLDELPEFER------RTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNR  370 (506)
T ss_pred             EEecCCchhCCH------HHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhh
Confidence            467899985432      4899999999999997 55566666677999999999951                    35


Q ss_pred             CChhhhccceE-eecCCCChHHH
Q psy4730         947 ITGRLLRHMNI-ISIDSFNEATL  968 (1513)
Q Consensus       947 ~~~r~~~~f~~-~~~~~~~~~~l  968 (1513)
                      +++.++.||-+ +.+++|+.+.+
T Consensus       371 ls~plLDRfdL~v~v~~~~~~~l  393 (506)
T PRK09862        371 LSGPFLDRFDLSLEIPLPPPGIL  393 (506)
T ss_pred             CCHhHHhhccEEEEeCCCCHHHH
Confidence            88899999999 78998887743

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=96.99  E-value=0.0029  Score=76.13  Aligned_cols=127  Identities=20%  Similarity=0.220  Sum_probs=71.4

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccc------cCCCC-CCc-------
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEF------DSASH-EWR------- 1418 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~------~~~t~-eW~------- 1418 (1513)
                      ++++.||+||||||+.+.+++.+..-..         ...+..+|...     +++..      +|.-. .+.       
T Consensus        38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~---------~~~~~~i~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (337)
T PRK12402         38 HLLVQGPPGSGKTAAVRALARELYGDPW---------ENNFTEFNVAD-----FFDQGKKYLVEDPRFAHFLGTDKRIRS  103 (337)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcCccc---------ccceEEechhh-----hhhcchhhhhcCcchhhhhhhhhhhcc
Confidence            7999999999999999999988753110         01223334321     11110      00000 000       


Q ss_pred             --cCHHHHHHHHhhcc--CCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCc
Q psy4730        1419 --DGILAKTFREMAVS--TTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASP 1492 (1513)
Q Consensus      1419 --DG~l~~~lR~~~~~--~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asP 1492 (1513)
                        ...+..+++.....  .....+-||+|.  .+++...+.|..+|++.             ++++++||-+++....-|
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~-------------~~~~~~Il~~~~~~~~~~  170 (337)
T PRK12402        104 SKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQY-------------SRTCRFIIATRQPSKLIP  170 (337)
T ss_pred             chHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhc-------------cCCCeEEEEeCChhhCch
Confidence              11222222222211  123456799995  34555666677666532             345677777666666677


Q ss_pred             chhhccEEEEeeCC
Q psy4730        1493 ATVSRVGMIYFELK 1506 (1513)
Q Consensus      1493 atvsRcg~v~~~~~ 1506 (1513)
                      +..|||..+.+.+-
T Consensus       171 ~L~sr~~~v~~~~~  184 (337)
T PRK12402        171 PIRSRCLPLFFRAP  184 (337)
T ss_pred             hhcCCceEEEecCC
Confidence            88899999988654

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.97  E-value=0.0043  Score=78.02  Aligned_cols=126  Identities=17%  Similarity=0.212  Sum_probs=74.7

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhccccc---------ccceeEEEecCCCCChhhccccccCCCCCCccC
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMK---------EFKTGYKIINPKSITMGQLYGEFDSASHEWRDG 1420 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~---------~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG 1420 (1513)
                      ..|.++++||+|+||||+.+.+++++.-.+.....+..         .....+..||+..                 ..|
T Consensus        35 l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~-----------------~~~   97 (504)
T PRK14963         35 LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAAS-----------------NNS   97 (504)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccc-----------------cCC
Confidence            35788999999999999999999998632211111111         1122334444321                 012


Q ss_pred             HHHHHHHHh----hc-cCCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchh
Q psy4730        1421 ILAKTFREM----AV-STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATV 1495 (1513)
Q Consensus      1421 ~l~~~lR~~----~~-~~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatv 1495 (1513)
                      +  ..+|+.    .. .....++.+|+|.+ |..--+.+|.+|..     |.+     .++++.+||-+.+.....|+..
T Consensus        98 v--d~iR~l~~~~~~~p~~~~~kVVIIDEa-d~ls~~a~naLLk~-----LEe-----p~~~t~~Il~t~~~~kl~~~I~  164 (504)
T PRK14963         98 V--EDVRDLREKVLLAPLRGGRKVYILDEA-HMMSKSAFNALLKT-----LEE-----PPEHVIFILATTEPEKMPPTIL  164 (504)
T ss_pred             H--HHHHHHHHHHhhccccCCCeEEEEECc-cccCHHHHHHHHHH-----HHh-----CCCCEEEEEEcCChhhCChHHh
Confidence            1  223332    11 12346789999974 32223444444321     111     2567788888888888899999


Q ss_pred             hccEEEEeeC
Q psy4730        1496 SRVGMIYFEL 1505 (1513)
Q Consensus      1496 sRcg~v~~~~ 1505 (1513)
                      |||..+.|.+
T Consensus       165 SRc~~~~f~~  174 (504)
T PRK14963        165 SRTQHFRFRR  174 (504)
T ss_pred             cceEEEEecC
Confidence            9999999875

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=96.96  E-value=0.0051  Score=73.46  Aligned_cols=59  Identities=14%  Similarity=0.146  Sum_probs=42.7

Q ss_pred             hHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         907 AVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       907 ~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ..+.|+.+++..            -.++.++.+++.+ ..+.+.+.+||..+.++.|+.+....+...++..
T Consensus       117 ~~~~L~~~le~~------------~~~~~~Ilt~n~~-~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~  175 (316)
T PHA02544        117 AQRHLRSFMEAY------------SKNCSFIITANNK-NGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVR  175 (316)
T ss_pred             HHHHHHHHHHhc------------CCCceEEEEcCCh-hhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHH
Confidence            456677766631            1245677777754 4688999999999999999999888777765443

>PRK06893 DNA replication initiation factor; Validated

Probab=96.96  E-value=0.003  Score=71.68  Aligned_cols=42  Identities=10%  Similarity=0.125  Sum_probs=32.9

Q ss_pred             EEEeecCC--CCCCChhhhccce---EeecCCCChHHHHHHHHHHhh
Q psy4730         936 YITAMIPT--MNTITGRLLRHMN---IISIDSFNEATLSKIFTSVLD  977 (1513)
Q Consensus       936 ~~~a~~~~--~~~~~~r~~~~f~---~~~~~~~~~~~l~~i~~~~l~  977 (1513)
                      ++++..+|  .....|++.+|+.   ++.+.+|+.++...|+.....
T Consensus       129 lits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~  175 (229)
T PRK06893        129 LISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAY  175 (229)
T ss_pred             EEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHH
Confidence            44555555  4556699999997   889999999999999987554

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=96.96  E-value=0.0012  Score=78.36  Aligned_cols=139  Identities=22%  Similarity=0.307  Sum_probs=91.0

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhccccc------c--------cce----eEEEecCCCCChhhccccccCC
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMK------E--------FKT----GYKIINPKSITMGQLYGEFDSA 1413 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~------~--------~~~----~~~~inp~~~t~~eL~G~~~~~ 1413 (1513)
                      ++|+|.|++|+||||+.+.|++.+..+......+..      +        ...    .-.+=-|...|.+.|+|.+|-.
T Consensus        30 ~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~  109 (334)
T PRK13407         30 GGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIE  109 (334)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhh
Confidence            789999999999999999999998543221111000      0        000    0011246667788899987754


Q ss_pred             C----C--CCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeec
Q psy4730        1414 S----H--EWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE 1485 (1513)
Q Consensus      1414 t----~--eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~ 1485 (1513)
                      .    +  .++.|.+.++          ..--+++|  ..+++.-.+.|-.+|++.....-..|...+.|..+.++. +.
T Consensus       110 ~~l~~g~~~~~~G~l~~A----------~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviA-t~  178 (334)
T PRK13407        110 RALTRGEKAFEPGLLARA----------NRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVG-SG  178 (334)
T ss_pred             hhhhcCCeeecCCceEEc----------CCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEe-cC
Confidence            2    2  2556655321          12468888  466888888888899887765556788888887655444 55


Q ss_pred             CC-C-CCCcchhhccEEE
Q psy4730        1486 NL-E-FASPATVSRVGMI 1501 (1513)
Q Consensus      1486 ~l-~-~asPatvsRcg~v 1501 (1513)
                      |. . ...|+...|+++.
T Consensus       179 NP~e~~l~~aLldRF~~~  196 (334)
T PRK13407        179 NPEEGELRPQLLDRFGLS  196 (334)
T ss_pred             CcccCCCCHHHHhhcceE
Confidence            54 3 4788899999864

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=96.95  E-value=0.0038  Score=77.69  Aligned_cols=89  Identities=15%  Similarity=0.312  Sum_probs=56.5

Q ss_pred             HHHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC--CCCCChhhhccce---EeecCC
Q psy4730         888 EMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT--MNTITGRLLRHMN---IISIDS  962 (1513)
Q Consensus       888 ~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~--~~~~~~r~~~~f~---~~~~~~  962 (1513)
                      .+++||+..-..    .....|.+..+++.  .|+.++        -.++++-.||  ...+.+|+.+||.   ++-+.+
T Consensus       209 vLiIDDiq~l~~----k~~~~e~lf~l~N~--~~~~~k--------~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~  274 (450)
T PRK14087        209 VLIIDDVQFLSY----KEKTNEIFFTIFNN--FIENDK--------QLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQK  274 (450)
T ss_pred             EEEEeccccccC----CHHHHHHHHHHHHH--HHHcCC--------cEEEECCCCHHHHhhccHHHHHHHhCCceeccCC
Confidence            455699964432    22345556555553  233322        1345555666  5679999999997   788999


Q ss_pred             CChHHHHHHHHHHhhhhhh-ccchhHHHH
Q psy4730         963 FNEATLSKIFTSVLDWHFS-KGFADSIVK  990 (1513)
Q Consensus       963 ~~~~~l~~i~~~~l~~~~~-~~f~~~~~~  990 (1513)
                      |+.++...|....+...-. ..+++++..
T Consensus       275 pd~e~r~~iL~~~~~~~gl~~~l~~evl~  303 (450)
T PRK14087        275 LDNKTATAIIKKEIKNQNIKQEVTEEAIN  303 (450)
T ss_pred             cCHHHHHHHHHHHHHhcCCCCCCCHHHHH
Confidence            9999999999987764211 135555444

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.95  E-value=0.0014  Score=80.46  Aligned_cols=134  Identities=21%  Similarity=0.214  Sum_probs=74.4

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFRE 1428 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~ 1428 (1513)
                      ..|++++.||+|+||||+.+++|++++--... ..++..|..  +..++....  .+ +..+|+.+   ..|+  .-+|+
T Consensus        39 i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s--C~~i~~g~~--~d-viEIdaas---~~gV--d~IRe  108 (484)
T PRK14956         39 IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS--CLEITKGIS--SD-VLEIDAAS---NRGI--ENIRE  108 (484)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH--HHHHHccCC--cc-ceeechhh---cccH--HHHHH
Confidence            35679999999999999999999998642111 001111100  011111100  00 11233211   1122  22333


Q ss_pred             h----hcc-CCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEE
Q psy4730        1429 M----AVS-TTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMI 1501 (1513)
Q Consensus      1429 ~----~~~-~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v 1501 (1513)
                      .    ... .....+-+|+|.  -++.   +..|.+|-   .|     |.  .|.++.||+-|++.....|+-.|||..+
T Consensus       109 L~e~l~~~p~~g~~KV~IIDEah~Ls~---~A~NALLK---tL-----EE--Pp~~viFILaTte~~kI~~TI~SRCq~~  175 (484)
T PRK14956        109 LRDNVKFAPMGGKYKVYIIDEVHMLTD---QSFNALLK---TL-----EE--PPAHIVFILATTEFHKIPETILSRCQDF  175 (484)
T ss_pred             HHHHHHhhhhcCCCEEEEEechhhcCH---HHHHHHHH---Hh-----hc--CCCceEEEeecCChhhccHHHHhhhhee
Confidence            2    111 123567899994  2233   44555431   11     11  3678899999999999999999999998


Q ss_pred             EeeCC
Q psy4730        1502 YFELK 1506 (1513)
Q Consensus      1502 ~~~~~ 1506 (1513)
                      .|.+-
T Consensus       176 ~f~~l  180 (484)
T PRK14956        176 IFKKV  180 (484)
T ss_pred             eecCC
Confidence            87653

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=96.93  E-value=0.0033  Score=77.69  Aligned_cols=43  Identities=16%  Similarity=0.223  Sum_probs=34.2

Q ss_pred             EEEeecCC--CCCCChhhhccce---EeecCCCChHHHHHHHHHHhhh
Q psy4730         936 YITAMIPT--MNTITGRLLRHMN---IISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       936 ~~~a~~~~--~~~~~~r~~~~f~---~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ++++..+|  -..+.+|+.+||.   .+.+++|+.++...|....+..
T Consensus       236 iits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~  283 (405)
T TIGR00362       236 VLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE  283 (405)
T ss_pred             EEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence            44555555  4568999999995   6999999999999999987654

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.93  E-value=0.027  Score=71.20  Aligned_cols=45  Identities=9%  Similarity=0.105  Sum_probs=34.6

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+.||.+++.+++ +++.+++|...+.+.+++.+++......++..
T Consensus       149 ~~~fIlattd~~k-l~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~  193 (509)
T PRK14958        149 HVKFILATTDHHK-LPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKE  193 (509)
T ss_pred             CeEEEEEECChHh-chHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH
Confidence            4566767765544 56669999999999999999988887777654

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=96.93  E-value=0.0039  Score=82.71  Aligned_cols=80  Identities=20%  Similarity=0.337  Sum_probs=59.6

Q ss_pred             hccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC------------------------CCCC
Q psy4730         892 DDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------------------------MNTI  947 (1513)
Q Consensus       892 dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------------------------~~~~  947 (1513)
                      ||+....++      +...|-|++|.|.+-|.. ...+...+..+|++.|..                        +..+
T Consensus       560 DEieka~~~------~~~~Ll~~ld~g~~~d~~-g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f  632 (731)
T TIGR02639       560 DEIEKAHPD------IYNILLQVMDYATLTDNN-GRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLF  632 (731)
T ss_pred             echhhcCHH------HHHHHHHhhccCeeecCC-CcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhc
Confidence            777755433      788999999988776543 344556677788877653                        1246


Q ss_pred             Chhhhccce-EeecCCCChHHHHHHHHHHhhh
Q psy4730         948 TGRLLRHMN-IISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       948 ~~r~~~~f~-~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      +|.|++|+. ++.+.+.+.+++.+|....+..
T Consensus       633 ~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~  664 (731)
T TIGR02639       633 SPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDE  664 (731)
T ss_pred             ChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence            889999995 7889999999999999987654

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=96.93  E-value=0.006  Score=78.19  Aligned_cols=90  Identities=12%  Similarity=0.241  Sum_probs=56.1

Q ss_pred             HHHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC--CCCCChhhhccceE--eecCCC
Q psy4730         888 EMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT--MNTITGRLLRHMNI--ISIDSF  963 (1513)
Q Consensus       888 ~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~--~~~~~~r~~~~f~~--~~~~~~  963 (1513)
                      .++|||+..-...   .|   +.|..+++--+.  .+       ..+.+||.+|+.  ...+.||+.+||..  +..+++
T Consensus       872 IIILDEID~L~kK---~Q---DVLYnLFR~~~~--s~-------SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PY  936 (1164)
T PTZ00112        872 ILIIDEIDYLITK---TQ---KVLFTLFDWPTK--IN-------SKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPY  936 (1164)
T ss_pred             EEEeehHhhhCcc---HH---HHHHHHHHHhhc--cC-------CeEEEEEecCchhcchhhhhhhhhccccccccCCCC
Confidence            3567888843322   12   445555552111  11       136778888874  34577899998865  777999


Q ss_pred             ChHHHHHHHHHHhhhhhhccchhHHHHHHH
Q psy4730         964 NEATLSKIFTSVLDWHFSKGFADSIVKLSK  993 (1513)
Q Consensus       964 ~~~~l~~i~~~~l~~~~~~~f~~~~~~~~~  993 (1513)
                      +.++|..|...-+... ..-+.+++..++.
T Consensus       937 TaEQL~dILk~RAe~A-~gVLdDdAIELIA  965 (1164)
T PTZ00112        937 KGDEIEKIIKERLENC-KEIIDHTAIQLCA  965 (1164)
T ss_pred             CHHHHHHHHHHHHHhC-CCCCCHHHHHHHH
Confidence            9999999999877653 1235555554443

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=96.90  E-value=0.0022  Score=78.07  Aligned_cols=45  Identities=18%  Similarity=0.152  Sum_probs=36.0

Q ss_pred             ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ++.+++|+|.+ ..+++.++|  ||. .+.++.|+.+....|+..++..
T Consensus       261 ~v~vI~ttn~~-~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~  308 (364)
T TIGR01242       261 NVKVIAATNRP-DILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRK  308 (364)
T ss_pred             CEEEEEecCCh-hhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhc
Confidence            67888999876 468888886  664 5899999999999999876544

Many proteins may score above the trusted cutoff because an internal

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=96.90  E-value=0.02  Score=75.93  Aligned_cols=133  Identities=15%  Similarity=0.147  Sum_probs=80.6

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCC-CChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKS-ITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~-~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
                      ..++|+||||+||||+.+.++++++.              .+.+++-.. .+..++.|.-.. -.+=..|-+...++++.
T Consensus       350 ~~i~l~GppG~GKTtl~~~ia~~l~~--------------~~~~i~~~~~~d~~~i~g~~~~-~~g~~~G~~~~~l~~~~  414 (784)
T PRK10787        350 PILCLVGPPGVGKTSLGQSIAKATGR--------------KYVRMALGGVRDEAEIRGHRRT-YIGSMPGKLIQKMAKVG  414 (784)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCC--------------CEEEEEcCCCCCHHHhccchhc-cCCCCCcHHHHHHHhcC
Confidence            47999999999999999999998763              234444332 334556554210 00113465555665542


Q ss_pred             ccCCCCceEEEEcCC--CChH----HHHhhhcccCCCCceeecC--CCe-eecCCCCeEEEeecCCCCCCcchhhccEEE
Q psy4730        1431 VSTTPDRKWIMFDGP--IDAV----WIENMNTVLDDNKKLCLIN--GEI-IKMSNTMNLIFECENLEFASPATVSRVGMI 1501 (1513)
Q Consensus      1431 ~~~~~~~~WivfDG~--~d~~----wiE~LNsvLDdn~~L~L~n--Ge~-i~~~~~~~~iFE~~~l~~asPatvsRcg~v 1501 (1513)
                          ....-|++|-.  +.+.    -...|-.+||++...+...  .+. +.+ +++.+|. |.|-...+||..+||-+|
T Consensus       415 ----~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dl-s~v~~i~-TaN~~~i~~aLl~R~~ii  488 (784)
T PRK10787        415 ----VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDL-SDVMFVA-TSNSMNIPAPLLDRMEVI  488 (784)
T ss_pred             ----CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccC-CceEEEE-cCCCCCCCHHHhcceeee
Confidence                12235888831  1111    1577888888765555433  221 222 3554444 667678999999999998


Q ss_pred             EeeC
Q psy4730        1502 YFEL 1505 (1513)
Q Consensus      1502 ~~~~ 1505 (1513)
                      .+.+
T Consensus       489 ~~~~  492 (784)
T PRK10787        489 RLSG  492 (784)
T ss_pred             ecCC
Confidence            7654

>PRK04195 replication factor C large subunit; Provisional

Probab=96.90  E-value=0.006  Score=77.11  Aligned_cols=112  Identities=19%  Similarity=0.162  Sum_probs=68.6

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
                      .++++|.||||+||||++++|++.++              ..+..+|+.....               ...+..++...+
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~--------------~~~ielnasd~r~---------------~~~i~~~i~~~~   89 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYG--------------WEVIELNASDQRT---------------ADVIERVAGEAA   89 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcC--------------CCEEEEccccccc---------------HHHHHHHHHHhh
Confidence            57999999999999999999988764              2334455432110               012233333332


Q ss_pred             ccC--C-CCceEEEEcC------CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCc-chhhccEE
Q psy4730        1431 VST--T-PDRKWIMFDG------PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASP-ATVSRVGM 1500 (1513)
Q Consensus      1431 ~~~--~-~~~~WivfDG------~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asP-atvsRcg~ 1500 (1513)
                      ...  . ...+-||+|.      .-|...++.|..+++..               +..+|+-+.+.....| ...+||..
T Consensus        90 ~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~---------------~~~iIli~n~~~~~~~k~Lrsr~~~  154 (482)
T PRK04195         90 TSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA---------------KQPIILTANDPYDPSLRELRNACLM  154 (482)
T ss_pred             ccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC---------------CCCEEEeccCccccchhhHhccceE
Confidence            211  1 2568899983      12335667777776532               2345665666666666 56689999


Q ss_pred             EEeeCC
Q psy4730        1501 IYFELK 1506 (1513)
Q Consensus      1501 v~~~~~ 1506 (1513)
                      |.|.+-
T Consensus       155 I~f~~~  160 (482)
T PRK04195        155 IEFKRL  160 (482)
T ss_pred             EEecCC
Confidence            998764

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=96.89  E-value=0.0081  Score=64.61  Aligned_cols=39  Identities=23%  Similarity=0.254  Sum_probs=30.7

Q ss_pred             hhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccC
Q psy4730         716 CMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       716 ~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~  754 (1513)
                      .+....++.+.....|||++|++||||+.+++..-....
T Consensus         9 ~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~   47 (168)
T PF00158_consen    9 KRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP   47 (168)
T ss_dssp             HHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST
T ss_pred             HHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh
Confidence            345556777788999999999999999999998876543

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=96.89  E-value=0.002  Score=80.09  Aligned_cols=44  Identities=20%  Similarity=0.317  Sum_probs=34.6

Q ss_pred             EEEEeecCC--CCCCChhhhccce---EeecCCCChHHHHHHHHHHhhh
Q psy4730         935 IYITAMIPT--MNTITGRLLRHMN---IISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       935 ~~~~a~~~~--~~~~~~r~~~~f~---~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .++++..+|  -..+.+|+.+||.   ++.+.+|+.++...|.......
T Consensus       230 iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~  278 (440)
T PRK14088        230 IVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI  278 (440)
T ss_pred             EEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence            344444555  3468899999998   8999999999999999887653

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=96.88  E-value=0.0038  Score=79.89  Aligned_cols=141  Identities=17%  Similarity=0.195  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhc------cccc---------ccceeEEEecCC
Q psy4730        1335 DWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKS------ATMK---------EFKTGYKIINPK 1399 (1513)
Q Consensus      1335 ~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~------~~~~---------~~~~~~~~inp~ 1399 (1513)
                      +..+..+.+.+..-+..|++|+.||+|+||||+.+.|+++++-......      ++..         ..+.++..++|.
T Consensus        30 ~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~  109 (598)
T PRK09111         30 EAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAA  109 (598)
T ss_pred             HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEeccc
Confidence            3444444445555556789999999999999999999999863221110      1111         122334444543


Q ss_pred             CCChhhccccccCCCCCCccCHHHHHHHHhh----cc-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeec
Q psy4730        1400 SITMGQLYGEFDSASHEWRDGILAKTFREMA----VS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKM 1474 (1513)
Q Consensus      1400 ~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~----~~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~ 1474 (1513)
                      +.+                 |  ..-+|+..    .. ....++-||+|. +|..--+..|.+|.     +|-     ..
T Consensus       110 s~~-----------------g--vd~IReIie~~~~~P~~a~~KVvIIDE-ad~Ls~~a~naLLK-----tLE-----eP  159 (598)
T PRK09111        110 SHT-----------------G--VDDIREIIESVRYRPVSARYKVYIIDE-VHMLSTAAFNALLK-----TLE-----EP  159 (598)
T ss_pred             ccC-----------------C--HHHHHHHHHHHHhchhcCCcEEEEEEC-hHhCCHHHHHHHHH-----HHH-----hC
Confidence            211                 1  12233332    11 134568899996 22222234444441     111     14


Q ss_pred             CCCCeEEEeecCCCCCCcchhhccEEEEeeC
Q psy4730        1475 SNTMNLIFECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1475 ~~~~~~iFE~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
                      |+++.|||-+++.....|...|||-.+.|.+
T Consensus       160 p~~~~fIl~tte~~kll~tI~SRcq~~~f~~  190 (598)
T PRK09111        160 PPHVKFIFATTEIRKVPVTVLSRCQRFDLRR  190 (598)
T ss_pred             CCCeEEEEEeCChhhhhHHHHhheeEEEecC
Confidence            7789999999999998888899999988765

>CHL00181 cbbX CbbX; Provisional

Probab=96.88  E-value=0.0023  Score=74.93  Aligned_cols=118  Identities=18%  Similarity=0.224  Sum_probs=68.9

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhcc
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVS 1432 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~~ 1432 (1513)
                      .+++.||||||||++.+.+++.+..++-...       ..+..++     ..+|.|.+--.+.    .-...+++++   
T Consensus        61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~-------~~~~~v~-----~~~l~~~~~g~~~----~~~~~~l~~a---  121 (287)
T CHL00181         61 HMSFTGSPGTGKTTVALKMADILYKLGYIKK-------GHLLTVT-----RDDLVGQYIGHTA----PKTKEVLKKA---  121 (287)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHcCCCCC-------CceEEec-----HHHHHHHHhccch----HHHHHHHHHc---
Confidence            4899999999999999999988764321110       1122233     3445554421110    0112233332   


Q ss_pred             CCCCceEEEEcC-----------CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeec-----CCCCCCcchhh
Q psy4730        1433 TTPDRKWIMFDG-----------PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE-----NLEFASPATVS 1496 (1513)
Q Consensus      1433 ~~~~~~WivfDG-----------~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~-----~l~~asPatvs 1496 (1513)
                         ...-+++|.           +...+-++.|..++|+.+             +++.+|+.+.     .+-...|+..|
T Consensus       122 ---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~-------------~~~~vI~ag~~~~~~~~~~~np~L~s  185 (287)
T CHL00181        122 ---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR-------------DDLVVIFAGYKDRMDKFYESNPGLSS  185 (287)
T ss_pred             ---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC-------------CCEEEEEeCCcHHHHHHHhcCHHHHH
Confidence               124667773           134667888888888753             4566666553     22344699999


Q ss_pred             ccE-EEEeeC
Q psy4730        1497 RVG-MIYFEL 1505 (1513)
Q Consensus      1497 Rcg-~v~~~~ 1505 (1513)
                      ||. .|+|++
T Consensus       186 R~~~~i~F~~  195 (287)
T CHL00181        186 RIANHVDFPD  195 (287)
T ss_pred             hCCceEEcCC
Confidence            998 466665

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.88  E-value=0.024  Score=69.90  Aligned_cols=45  Identities=13%  Similarity=0.149  Sum_probs=36.1

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+.||.|++.+ ..|++.+++|+..+.+..++.+++......++..
T Consensus       151 ~viFILaTte~-~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~  195 (484)
T PRK14956        151 HIVFILATTEF-HKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI  195 (484)
T ss_pred             ceEEEeecCCh-hhccHHHHhhhheeeecCCCHHHHHHHHHHHHHH
Confidence            45677777664 4789999999999999999999988877776553

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=96.88  E-value=0.038  Score=70.99  Aligned_cols=69  Identities=12%  Similarity=0.202  Sum_probs=49.4

Q ss_pred             hhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHH
Q psy4730         891 LDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSK  970 (1513)
Q Consensus       891 ~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~  970 (1513)
                      |||+.|-..+     ..-.||+.+.+.             -..+.||.+++.+ ..|++-+++|+..+.+..++.+.+..
T Consensus       125 IDEah~LT~~-----A~NALLKtLEEP-------------P~~v~FILaTtd~-~KIp~TIrSRCq~f~Fk~Ls~eeIv~  185 (830)
T PRK07003        125 IDEVHMLTNH-----AFNAMLKTLEEP-------------PPHVKFILATTDP-QKIPVTVLSRCLQFNLKQMPAGHIVS  185 (830)
T ss_pred             EeChhhCCHH-----HHHHHHHHHHhc-------------CCCeEEEEEECCh-hhccchhhhheEEEecCCcCHHHHHH
Confidence            5888766533     123466655552             1246677777765 35778899999999999999999998


Q ss_pred             HHHHHhhh
Q psy4730         971 IFTSVLDW  978 (1513)
Q Consensus       971 i~~~~l~~  978 (1513)
                      ....++..
T Consensus       186 ~L~~Il~~  193 (830)
T PRK07003        186 HLERILGE  193 (830)
T ss_pred             HHHHHHHH
Confidence            88887653

>KOG0730|consensus

Probab=96.87  E-value=0.0017  Score=80.33  Aligned_cols=48  Identities=19%  Similarity=0.149  Sum_probs=39.8

Q ss_pred             cceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhhhh
Q psy4730         932 VDIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDWHF  980 (1513)
Q Consensus       932 ~~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~~~  980 (1513)
                      .++.++||+|-|- .|++.++|  ||- ++|++.|+.++-..|+...++.+-
T Consensus       569 k~V~ViAATNRpd-~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp  619 (693)
T KOG0730|consen  569 KNVLVIAATNRPD-MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP  619 (693)
T ss_pred             CcEEEEeccCChh-hcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC
Confidence            4788999999662 37888888  775 599999999999999999877653

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=96.87  E-value=0.0023  Score=84.48  Aligned_cols=139  Identities=22%  Similarity=0.282  Sum_probs=78.4

Q ss_pred             HHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccccceeEEEecC---CCCChhhccccccCCCCCCccC
Q psy4730        1345 YEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKEFKTGYKIINP---KSITMGQLYGEFDSASHEWRDG 1420 (1513)
Q Consensus      1345 ~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~~~~~~~~inp---~~~t~~eL~G~~~~~t~eW~DG 1420 (1513)
                      ++.-+..|..|+.||+||||||+.++|++.++-..+. ...+..|..  |..|+.   ...+.-++    |..+.   -|
T Consensus        31 i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s--C~~~~~g~~~~~dv~ei----daas~---~~  101 (824)
T PRK07764         31 LDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS--CVALAPGGPGSLDVTEI----DAASH---GG  101 (824)
T ss_pred             HHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH--HHHHHcCCCCCCcEEEe----ccccc---CC
Confidence            3334457899999999999999999999998631111 111111110  111111   11111111    11000   01


Q ss_pred             HHHHHHHHhh----cc-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeee-cCCCCeEEEeecCCCCCCcch
Q psy4730        1421 ILAKTFREMA----VS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIK-MSNTMNLIFECENLEFASPAT 1494 (1513)
Q Consensus      1421 ~l~~~lR~~~----~~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~-~~~~~~~iFE~~~l~~asPat 1494 (1513)
                        ..-+|+..    .. .....+-||+|. +|-.=-+..|.+|.           .|. .|+++.|||-+++...+-|+.
T Consensus       102 --Vd~iR~l~~~~~~~p~~~~~KV~IIDE-ad~lt~~a~NaLLK-----------~LEEpP~~~~fIl~tt~~~kLl~TI  167 (824)
T PRK07764        102 --VDDARELRERAFFAPAESRYKIFIIDE-AHMVTPQGFNALLK-----------IVEEPPEHLKFIFATTEPDKVIGTI  167 (824)
T ss_pred             --HHHHHHHHHHHHhchhcCCceEEEEec-hhhcCHHHHHHHHH-----------HHhCCCCCeEEEEEeCChhhhhHHH
Confidence              22334332    11 234678899994 11111255566551           111 577899999999998888889


Q ss_pred             hhccEEEEeeCC
Q psy4730        1495 VSRVGMIYFELK 1506 (1513)
Q Consensus      1495 vsRcg~v~~~~~ 1506 (1513)
                      .|||-++.|.+-
T Consensus       168 rSRc~~v~F~~l  179 (824)
T PRK07764        168 RSRTHHYPFRLV  179 (824)
T ss_pred             HhheeEEEeeCC
Confidence            999999998753

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=96.86  E-value=0.0087  Score=66.10  Aligned_cols=64  Identities=9%  Similarity=0.095  Sum_probs=47.0

Q ss_pred             hHHHHHHHHhc-CCccccCCceeeeecceEEEEeecCCCCCCChhhhccceE-eecCCCChHHHHHHHHHHhhhh
Q psy4730         907 AVELLRQIIDH-KHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNI-ISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       907 ~le~lr~~~~~-~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~-~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      +-|..+.|+.. .|.-++        +.+..|||+|.|. -++|.+.+||-. +-..-|+.+....|...+...+
T Consensus       235 VsEiVNALLTelDgi~en--------eGVvtIaaTN~p~-~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~  300 (368)
T COG1223         235 VSEIVNALLTELDGIKEN--------EGVVTIAATNRPE-LLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF  300 (368)
T ss_pred             HHHHHHHHHHhccCcccC--------CceEEEeecCChh-hcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC
Confidence            45666676663 344332        3677888888763 488999999987 8888899999999998886653

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=96.85  E-value=0.0029  Score=75.35  Aligned_cols=134  Identities=18%  Similarity=0.152  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCC
Q psy4730        1338 IEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEW 1417 (1513)
Q Consensus      1338 ~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW 1417 (1513)
                      +..+.+-...-+..|+.+++||.|+||||+.+.+++++.-....      ....+++.+.|.       -|      .. 
T Consensus        13 ~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~------~~h~D~~~~~~~-------~~------~~-   72 (313)
T PRK05564         13 KNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQ------REYVDIIEFKPI-------NK------KS-   72 (313)
T ss_pred             HHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCC------CCCCCeEEeccc-------cC------CC-
Confidence            33333444444567899999999999999999999887421100      011223333331       01      00 


Q ss_pred             ccCHHHHHHHHhhc----c-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCc
Q psy4730        1418 RDGILAKTFREMAV----S-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASP 1492 (1513)
Q Consensus      1418 ~DG~l~~~lR~~~~----~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asP 1492 (1513)
                         +=..-+|+...    . ....++.+|+|. +|..=.++-|++|     -+|.+     .|+++.+|+-+++...+-|
T Consensus        73 ---i~v~~ir~~~~~~~~~p~~~~~kv~iI~~-ad~m~~~a~naLL-----K~LEe-----pp~~t~~il~~~~~~~ll~  138 (313)
T PRK05564         73 ---IGVDDIRNIIEEVNKKPYEGDKKVIIIYN-SEKMTEQAQNAFL-----KTIEE-----PPKGVFIILLCENLEQILD  138 (313)
T ss_pred             ---CCHHHHHHHHHHHhcCcccCCceEEEEec-hhhcCHHHHHHHH-----HHhcC-----CCCCeEEEEEeCChHhCcH
Confidence               11233555432    2 234678888887 2222234555565     12222     5778899999999999999


Q ss_pred             chhhccEEEEeeC
Q psy4730        1493 ATVSRVGMIYFEL 1505 (1513)
Q Consensus      1493 atvsRcg~v~~~~ 1505 (1513)
                      +-.|||-++.|.+
T Consensus       139 TI~SRc~~~~~~~  151 (313)
T PRK05564        139 TIKSRCQIYKLNR  151 (313)
T ss_pred             HHHhhceeeeCCC
Confidence            9999999999875

>smart00350 MCM minichromosome maintenance proteins

Probab=96.85  E-value=0.0024  Score=80.94  Aligned_cols=85  Identities=12%  Similarity=0.240  Sum_probs=57.7

Q ss_pred             HHhhccCCCCCccCCCCChHHHHHHHHhcCCc-cccCCceeeeecceEEEEeecCC--CC----------CCChhhhccc
Q psy4730         889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHL-YDFQTVTRVDLVDIIYITAMIPT--MN----------TITGRLLRHM  955 (1513)
Q Consensus       889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~-yd~~~~~~~~~~~~~~~~a~~~~--~~----------~~~~r~~~~f  955 (1513)
                      +++||+|.-..      .....|.+.++.+.. ..+.......-.++.++||+||-  +.          .+|+.+++||
T Consensus       304 l~iDEi~~l~~------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRF  377 (509)
T smart00350      304 CCIDEFDKMDD------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRF  377 (509)
T ss_pred             EEEechhhCCH------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCce
Confidence            45699984332      235566667776654 23333333333589999999996  21          7999999999


Q ss_pred             eE--eecCCCChHHHHHHHHHHhhhh
Q psy4730         956 NI--ISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       956 ~~--~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      -+  +..++|+.+.-..|...++..+
T Consensus       378 dLi~~~~d~~~~~~d~~i~~~i~~~~  403 (509)
T smart00350      378 DLLFVVLDEVDEERDRELAKHVVDLH  403 (509)
T ss_pred             eeEEEecCCCChHHHHHHHHHHHHhh
Confidence            66  5568899988888887776543

>PRK08727 hypothetical protein; Validated

Probab=96.84  E-value=0.0023  Score=72.74  Aligned_cols=39  Identities=10%  Similarity=0.117  Sum_probs=31.1

Q ss_pred             EeecCC--CCCCChhhhccc---eEeecCCCChHHHHHHHHHHh
Q psy4730         938 TAMIPT--MNTITGRLLRHM---NIISIDSFNEATLSKIFTSVL  976 (1513)
Q Consensus       938 ~a~~~~--~~~~~~r~~~~f---~~~~~~~~~~~~l~~i~~~~l  976 (1513)
                      ++-.||  ...+.|++.+||   .++.+++|+.+++..|.....
T Consensus       132 ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a  175 (233)
T PRK08727        132 TARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERA  175 (233)
T ss_pred             ECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHH
Confidence            344455  567889999995   578999999999999999754

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=96.83  E-value=0.0061  Score=72.17  Aligned_cols=140  Identities=18%  Similarity=0.212  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccc---------cceeEEEecCCCCChhhccc
Q psy4730        1339 EKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKE---------FKTGYKIINPKSITMGQLYG 1408 (1513)
Q Consensus      1339 ~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~---------~~~~~~~inp~~~t~~eL~G 1408 (1513)
                      ..+.+.++.-+..|+.++.||+|+||+++.+.+|+++.-.... ..+++.|         .+.+++.+.|..       |
T Consensus        12 ~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-------~   84 (325)
T PRK06871         12 QQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID-------N   84 (325)
T ss_pred             HHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc-------C
Confidence            3344444445667999999999999999999999998632211 1122221         344556666531       0


Q ss_pred             cccCCCCCCccCHHHHHHHHhhc-----cCCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEe
Q psy4730        1409 EFDSASHEWRDGILAKTFREMAV-----STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFE 1483 (1513)
Q Consensus      1409 ~~~~~t~eW~DG~l~~~lR~~~~-----~~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE 1483 (1513)
                                ..+=..-+|+...     ...+..+.+|+|. +|.-=.++-|++|   |+|     |  ..|+++.||+-
T Consensus        85 ----------~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~-a~~m~~~AaNaLL---KtL-----E--EPp~~~~fiL~  143 (325)
T PRK06871         85 ----------KDIGVDQVREINEKVSQHAQQGGNKVVYIQG-AERLTEAAANALL---KTL-----E--EPRPNTYFLLQ  143 (325)
T ss_pred             ----------CCCCHHHHHHHHHHHhhccccCCceEEEEec-hhhhCHHHHHHHH---HHh-----c--CCCCCeEEEEE
Confidence                      0122445565432     2235678888886 3333345666775   222     1  14788899999


Q ss_pred             ecCCCCCCcchhhccEEEEeeCC
Q psy4730        1484 CENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1484 ~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
                      +++....-|...|||-.+.|.+-
T Consensus       144 t~~~~~llpTI~SRC~~~~~~~~  166 (325)
T PRK06871        144 ADLSAALLPTIYSRCQTWLIHPP  166 (325)
T ss_pred             ECChHhCchHHHhhceEEeCCCC
Confidence            99999998989999999999774

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=96.82  E-value=0.01  Score=71.41  Aligned_cols=44  Identities=9%  Similarity=0.076  Sum_probs=32.6

Q ss_pred             eEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         934 IIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       934 ~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ..++.+++.+. .+.+.+.+|+..+.+.+|+.+++..+...++..
T Consensus       156 ~~~Il~~~~~~-~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~  199 (337)
T PRK12402        156 CRFIIATRQPS-KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEA  199 (337)
T ss_pred             CeEEEEeCChh-hCchhhcCCceEEEecCCCHHHHHHHHHHHHHH
Confidence            34555554332 456778899999999999999998888887654

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.82  E-value=0.0022  Score=79.89  Aligned_cols=124  Identities=21%  Similarity=0.224  Sum_probs=68.9

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhc-ccccc---------cceeEEEecCCCCChhhccccccCCCCCCccC
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKS-ATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWRDG 1420 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~-~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG 1420 (1513)
                      .|++++.||||+||||+.+++++.++....... ++..|         ....+..+|+.              .   ..|
T Consensus        36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa--------------~---~~g   98 (472)
T PRK14962         36 SHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAA--------------S---NRG   98 (472)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCc--------------c---cCC
Confidence            467999999999999999999999864211100 00000         01112222221              1   112


Q ss_pred             HHHHHHHHh---hc-c-CCCCceEEEEcCC--CChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcc
Q psy4730        1421 ILAKTFREM---AV-S-TTPDRKWIMFDGP--IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPA 1493 (1513)
Q Consensus      1421 ~l~~~lR~~---~~-~-~~~~~~WivfDG~--~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPa 1493 (1513)
                      +  .-+|+.   .. . .....+-+|+|..  +...-.+.|-..|++             .|+++.+++-+++.....|+
T Consensus        99 i--d~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~-------------p~~~vv~Ilattn~~kl~~~  163 (472)
T PRK14962         99 I--DEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEE-------------PPSHVVFVLATTNLEKVPPT  163 (472)
T ss_pred             H--HHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHh-------------CCCcEEEEEEeCChHhhhHH
Confidence            1  223332   11 1 1245678889962  112112222222322             24567778888888888999


Q ss_pred             hhhccEEEEeeCC
Q psy4730        1494 TVSRVGMIYFELK 1506 (1513)
Q Consensus      1494 tvsRcg~v~~~~~ 1506 (1513)
                      ..|||.++.|.+-
T Consensus       164 L~SR~~vv~f~~l  176 (472)
T PRK14962        164 IISRCQVIEFRNI  176 (472)
T ss_pred             HhcCcEEEEECCc
Confidence            9999999988653

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=96.82  E-value=0.0074  Score=71.86  Aligned_cols=80  Identities=13%  Similarity=0.254  Sum_probs=58.0

Q ss_pred             HHhhccCCCCCccCCCCChHHHHHHHHhcCCc-cccCCceeeeecceEEEEeecCCCCCCChhhhccceE-eecCCCCh-
Q psy4730         889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHL-YDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNI-ISIDSFNE-  965 (1513)
Q Consensus       889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~-yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~-~~~~~~~~-  965 (1513)
                      +|+||+|....      ...+.|.+.++.|.. +.+.......-..+.++|++||....+++.++.||.. +.+++|.. 
T Consensus       132 L~lDEInrl~~------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~  205 (334)
T PRK13407        132 LYIDEVNLLED------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDV  205 (334)
T ss_pred             EEecChHhCCH------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcH
Confidence            56799995543      367888888887754 3444444444458899999999877799999999986 78888877 


Q ss_pred             HHHHHHHHH
Q psy4730         966 ATLSKIFTS  974 (1513)
Q Consensus       966 ~~l~~i~~~  974 (1513)
                      ++-..|...
T Consensus       206 ~e~~~il~~  214 (334)
T PRK13407        206 ETRVEVIRR  214 (334)
T ss_pred             HHHHHHHHH
Confidence            454555554

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=96.81  E-value=0.0042  Score=73.93  Aligned_cols=136  Identities=13%  Similarity=0.090  Sum_probs=82.0

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHHHhHhhh--hcccccc---------cceeEEEecCCCCChhhccccccCCCCCC
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK--KSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEW 1417 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~--~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW 1417 (1513)
                      +..|+.++.||+|+|||++.+.+|+++.-....  ..++..|         .+.+++.+.|.+-.         ...+..
T Consensus        19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~---------~~~g~~   89 (325)
T PRK08699         19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE---------PENGRK   89 (325)
T ss_pred             CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc---------cccccc
Confidence            567899999999999999999999998522111  1122221         34556677763210         000111


Q ss_pred             ccCHHHHHHHHhhc----cC-CCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCC
Q psy4730        1418 RDGILAKTFREMAV----ST-TPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFA 1490 (1513)
Q Consensus      1418 ~DG~l~~~lR~~~~----~~-~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~a 1490 (1513)
                      ...+=..-+|+...    .+ ...++.+|.|  .-+|+.....|-..|++-             |+++.+|+-+++...+
T Consensus        90 ~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep-------------~~~~~~Ilvth~~~~l  156 (325)
T PRK08699         90 LLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEP-------------PPQVVFLLVSHAADKV  156 (325)
T ss_pred             CCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhC-------------cCCCEEEEEeCChHhC
Confidence            11122445565432    22 2345666544  223555555554444332             3457799999999999


Q ss_pred             CcchhhccEEEEeeCC
Q psy4730        1491 SPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1491 sPatvsRcg~v~~~~~ 1506 (1513)
                      .|+..|||-.+.|.+-
T Consensus       157 l~ti~SRc~~~~~~~~  172 (325)
T PRK08699        157 LPTIKSRCRKMVLPAP  172 (325)
T ss_pred             hHHHHHHhhhhcCCCC
Confidence            9999999999998774

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=96.80  E-value=0.0076  Score=81.17  Aligned_cols=82  Identities=17%  Similarity=0.294  Sum_probs=60.7

Q ss_pred             HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC------------------------C
Q psy4730         889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------------------------M  944 (1513)
Q Consensus       889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------------------------~  944 (1513)
                      +++||+....+      .+...|-|+++.|.+-|.. ...+...+..+|++.|-.                        +
T Consensus       671 lllDeieka~~------~v~~~Ll~~l~~g~l~d~~-g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~  743 (852)
T TIGR03346       671 VLFDEVEKAHP------DVFNVLLQVLDDGRLTDGQ-GRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLR  743 (852)
T ss_pred             EEEeccccCCH------HHHHHHHHHHhcCceecCC-CeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHH
Confidence            45688875543      3678888999998877653 355666677888888863                        2


Q ss_pred             CCCChhhhccc-eEeecCCCChHHHHHHHHHHhh
Q psy4730         945 NTITGRLLRHM-NIISIDSFNEATLSKIFTSVLD  977 (1513)
Q Consensus       945 ~~~~~r~~~~f-~~~~~~~~~~~~l~~i~~~~l~  977 (1513)
                      ....|.|++|+ .++...+++.+.+..|..-.+.
T Consensus       744 ~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~  777 (852)
T TIGR03346       744 AHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLG  777 (852)
T ss_pred             hhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHH
Confidence            23668899999 5688888999999999887664

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=96.80  E-value=0.0035  Score=73.75  Aligned_cols=120  Identities=22%  Similarity=0.295  Sum_probs=71.3

Q ss_pred             HHHHHHhc--ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCH
Q psy4730        1344 VYEMILVR--HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGI 1421 (1513)
Q Consensus      1344 L~~~~~~~--~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~ 1421 (1513)
                      |.+++...  +..|+.||||+||||+.++++...+              ..+..+|.-.-+.+|+=              
T Consensus        39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~--------------~~f~~~sAv~~gvkdlr--------------   90 (436)
T COG2256          39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN--------------AAFEALSAVTSGVKDLR--------------   90 (436)
T ss_pred             HHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC--------------CceEEeccccccHHHHH--------------
Confidence            55566644  4899999999999999999998765              35566665544444432              


Q ss_pred             HHHHHHHhhc-cCCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCC-CCcchhhccE
Q psy4730        1422 LAKTFREMAV-STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEF-ASPATVSRVG 1499 (1513)
Q Consensus      1422 l~~~lR~~~~-~~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~-asPatvsRcg 1499 (1513)
                        .++.++.+ .....+.-+.+|.      |.++|..=-|-=.-.+-||..|-+.-.      |+|-++ ..||..|||-
T Consensus        91 --~i~e~a~~~~~~gr~tiLflDE------IHRfnK~QQD~lLp~vE~G~iilIGAT------TENPsF~ln~ALlSR~~  156 (436)
T COG2256          91 --EIIEEARKNRLLGRRTILFLDE------IHRFNKAQQDALLPHVENGTIILIGAT------TENPSFELNPALLSRAR  156 (436)
T ss_pred             --HHHHHHHHHHhcCCceEEEEeh------hhhcChhhhhhhhhhhcCCeEEEEecc------CCCCCeeecHHHhhhhh
Confidence              22222211 1223456666675      566665433322222335555544321      223222 5799999999


Q ss_pred             EEEeeC
Q psy4730        1500 MIYFEL 1505 (1513)
Q Consensus      1500 ~v~~~~ 1505 (1513)
                      +..+.|
T Consensus       157 vf~lk~  162 (436)
T COG2256         157 VFELKP  162 (436)
T ss_pred             eeeeec
Confidence            988765

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=96.79  E-value=0.024  Score=72.57  Aligned_cols=45  Identities=13%  Similarity=0.197  Sum_probs=35.5

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+.||.+++.++ .+++.+++|+..+.+..++.+.+......++..
T Consensus       149 ~v~fILaTtd~~-kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~k  193 (709)
T PRK08691        149 HVKFILATTDPH-KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDS  193 (709)
T ss_pred             CcEEEEEeCCcc-ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHH
Confidence            456676776544 466778899999999999999999988887764

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=96.78  E-value=0.0042  Score=79.52  Aligned_cols=123  Identities=15%  Similarity=0.145  Sum_probs=76.2

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccc---------cceeEEEecCCCCChhhccccccCCCCCCc
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWR 1418 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~ 1418 (1513)
                      ...|..++.||+|+||||+.+.+++.++-..+. ..++..|         ...++..+++.                 +.
T Consensus        36 rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaa-----------------s~   98 (647)
T PRK07994         36 RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAA-----------------SR   98 (647)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeeccc-----------------cc
Confidence            446889999999999999999999998742211 1111111         01112222221                 12


Q ss_pred             cCHHHHHHHHhh----cc-CCCCceEEEEcC--CCChHHHHhhhccc---CCCCceeecCCCeeecCCCCeEEEeecCCC
Q psy4730        1419 DGILAKTFREMA----VS-TTPDRKWIMFDG--PIDAVWIENMNTVL---DDNKKLCLINGEIIKMSNTMNLIFECENLE 1488 (1513)
Q Consensus      1419 DG~l~~~lR~~~----~~-~~~~~~WivfDG--~~d~~wiE~LNsvL---Ddn~~L~L~nGe~i~~~~~~~~iFE~~~l~ 1488 (1513)
                      .|+  .-+|+..    .. .....+-+|+|.  -+..   +..|.+|   ++             .|++++||+-|++..
T Consensus        99 ~~V--ddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~---~a~NALLKtLEE-------------Pp~~v~FIL~Tt~~~  160 (647)
T PRK07994         99 TKV--EDTRELLDNVQYAPARGRFKVYLIDEVHMLSR---HSFNALLKTLEE-------------PPEHVKFLLATTDPQ  160 (647)
T ss_pred             CCH--HHHHHHHHHHHhhhhcCCCEEEEEechHhCCH---HHHHHHHHHHHc-------------CCCCeEEEEecCCcc
Confidence            232  2234332    22 134678899995  2233   4455554   32             477899999999999


Q ss_pred             CCCcchhhccEEEEeeCC
Q psy4730        1489 FASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1489 ~asPatvsRcg~v~~~~~ 1506 (1513)
                      ...|+-.|||-.++|.+-
T Consensus       161 kLl~TI~SRC~~~~f~~L  178 (647)
T PRK07994        161 KLPVTILSRCLQFHLKAL  178 (647)
T ss_pred             ccchHHHhhheEeeCCCC
Confidence            998888999999988653

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.78  E-value=0.044  Score=69.66  Aligned_cols=45  Identities=7%  Similarity=0.169  Sum_probs=35.1

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+.||.+++.++ .+++.+++|+..+.+.+++.+.+......++..
T Consensus       148 ~v~FILaTtd~~-kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~k  192 (702)
T PRK14960        148 HVKFLFATTDPQ-KLPITVISRCLQFTLRPLAVDEITKHLGAILEK  192 (702)
T ss_pred             CcEEEEEECChH-hhhHHHHHhhheeeccCCCHHHHHHHHHHHHHH
Confidence            345666665443 467788899999999999999999888887654

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.78  E-value=0.037  Score=69.05  Aligned_cols=45  Identities=9%  Similarity=0.186  Sum_probs=35.5

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+.||.+++. ...+++.+.+|+..+.+.+++.+++......++..
T Consensus       146 ~v~fIlatte-~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~  190 (491)
T PRK14964        146 HVKFILATTE-VKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKK  190 (491)
T ss_pred             CeEEEEEeCC-hHHHHHHHHHhheeeecccccHHHHHHHHHHHHHH
Confidence            3556656543 34588999999999999999999999888887653

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=96.77  E-value=0.0011  Score=72.56  Aligned_cols=130  Identities=15%  Similarity=0.202  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccc------cc-------cceeEEEecCCCCChh
Q psy4730        1338 IEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATM------KE-------FKTGYKIINPKSITMG 1404 (1513)
Q Consensus      1338 ~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~------~~-------~~~~~~~inp~~~t~~ 1404 (1513)
                      ..+++++..+  -.|+++++||||||||++.+.+...+-.+......+.      ..       ....-++--+++.|..
T Consensus        11 aKrAL~iAAa--G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~   88 (206)
T PF01078_consen   11 AKRALEIAAA--GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEA   88 (206)
T ss_dssp             HHHHHHHHHH--CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---EEEE-TT--HH
T ss_pred             HHHHHHHHHc--CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCcccCCCCcCHH
Confidence            4455555544  4799999999999999999999887766543221110      00       1122345566788899


Q ss_pred             hccccccCCCCCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEE
Q psy4730        1405 QLYGEFDSASHEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIF 1482 (1513)
Q Consensus      1405 eL~G~~~~~t~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iF 1482 (1513)
                      .|+|.-    ....-|.++.+          .+--+.+|  ...++..+|.|-..|++.+.----.|..+..|.++-++-
T Consensus        89 ~liGgg----~~~~PGeislA----------h~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~  154 (206)
T PF01078_consen   89 ALIGGG----RPPRPGEISLA----------HRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVA  154 (206)
T ss_dssp             HHHEEG----GGEEE-CGGGG----------TTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEE
T ss_pred             HHhCCC----cCCCcCHHHHh----------cCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEE
Confidence            999973    25666776654          23678889  677999999999999887655555688898887765554


Q ss_pred             e
Q psy4730        1483 E 1483 (1513)
Q Consensus      1483 E 1483 (1513)
                      .
T Consensus       155 a  155 (206)
T PF01078_consen  155 A  155 (206)
T ss_dssp             E
T ss_pred             E
Confidence            3

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=96.77  E-value=0.0029  Score=75.44  Aligned_cols=139  Identities=22%  Similarity=0.295  Sum_probs=88.8

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhccccc------------cc--------------ceeEEEecCCCCChh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMK------------EF--------------KTGYKIINPKSITMG 1404 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~------------~~--------------~~~~~~inp~~~t~~ 1404 (1513)
                      ..+|+|.|++|+||||++++++..+....+....+..            +.              +..+.. -|-.+|-+
T Consensus        25 ~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-lP~~~t~d  103 (337)
T TIGR02030        25 IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQEPLSIIKKPVPVVD-LPLGATED  103 (337)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcccccccccCCCCcCC-CCCCCccc
Confidence            4689999999999999999999888432211110000            00              001112 45566678


Q ss_pred             hccccccCC----CC--CCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCC
Q psy4730        1405 QLYGEFDSA----SH--EWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSN 1476 (1513)
Q Consensus      1405 eL~G~~~~~----t~--eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~ 1476 (1513)
                      .|+|..|..    ++  .++.|++.++          ..-.+++|  +.+++.-...|-.+|+++..-.-..|...+.|.
T Consensus       104 ~l~G~~d~~~~l~~g~~~~~~GlL~~A----------~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~  173 (337)
T TIGR02030       104 RVCGTLDIERALTEGVKAFEPGLLARA----------NRGILYIDEVNLLEDHLVDVLLDVAASGWNVVEREGISIRHPA  173 (337)
T ss_pred             ceecchhHhhHhhcCCEEeecCcceec----------cCCEEEecChHhCCHHHHHHHHHHHHhCCeEEEECCEEEEcCC
Confidence            899988732    22  2455655322          23688889  567888888888888877544455688777776


Q ss_pred             CCeEEEeecCCC--CCCcchhhccEEE
Q psy4730        1477 TMNLIFECENLE--FASPATVSRVGMI 1501 (1513)
Q Consensus      1477 ~~~~iFE~~~l~--~asPatvsRcg~v 1501 (1513)
                      .+ ++.-+.|+.  ...|+...|.+|.
T Consensus       174 r~-iviat~np~eg~l~~~LldRf~l~  199 (337)
T TIGR02030       174 RF-VLVGSGNPEEGELRPQLLDRFGLH  199 (337)
T ss_pred             CE-EEEeccccccCCCCHHHHhhcceE
Confidence            54 444455543  4788999999974

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=96.77  E-value=0.0036  Score=75.23  Aligned_cols=154  Identities=18%  Similarity=0.189  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhh---hhc----ccccccceeEEEecCCCCC-hhhcccc
Q psy4730        1338 IEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAA---KKS----ATMKEFKTGYKIINPKSIT-MGQLYGE 1409 (1513)
Q Consensus      1338 ~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~---~~~----~~~~~~~~~~~~inp~~~t-~~eL~G~ 1409 (1513)
                      .......++.-...|++++.||+|+||||+.+.+++.+.--..   ...    ++..+  ..++.+.-.+.. .-.+...
T Consensus        32 ~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c--~~c~~i~~~~hPdl~~l~~~  109 (351)
T PRK09112         32 EAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPAS--PVWRQIAQGAHPNLLHITRP  109 (351)
T ss_pred             HHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCC--HHHHHHHcCCCCCEEEeecc
Confidence            3344444444555789999999999999999999998753110   000    00000  000011000000 0001111


Q ss_pred             ccCCCCCCccCHHHHHHHHhhc-----cCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEE
Q psy4730        1410 FDSASHEWRDGILAKTFREMAV-----STTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIF 1482 (1513)
Q Consensus      1410 ~~~~t~eW~DG~l~~~lR~~~~-----~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iF 1482 (1513)
                      .++.++...-++-...+|+...     ......+.+|+|.  .++.   ++.|.+|   |.|     |.  .|++..+++
T Consensus       110 ~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~---~aanaLL---k~L-----EE--pp~~~~fiL  176 (351)
T PRK09112        110 FDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR---NAANAIL---KTL-----EE--PPARALFIL  176 (351)
T ss_pred             cccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH---HHHHHHH---HHH-----hc--CCCCceEEE
Confidence            2222223333444555666532     2234668899995  2333   3344443   111     22  356677777


Q ss_pred             eecCCCCCCcchhhccEEEEeeCC
Q psy4730        1483 ECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1483 E~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
                      -+++.....|...|||-.+.+.+-
T Consensus       177 it~~~~~llptIrSRc~~i~l~pl  200 (351)
T PRK09112        177 ISHSSGRLLPTIRSRCQPISLKPL  200 (351)
T ss_pred             EECChhhccHHHHhhccEEEecCC
Confidence            788888888999999999998763

>PRK04195 replication factor C large subunit; Provisional

Probab=96.77  E-value=0.012  Score=74.54  Aligned_cols=43  Identities=7%  Similarity=0.048  Sum_probs=31.9

Q ss_pred             EEEEeecCCCCCCCh-hhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         935 IYITAMIPTMNTITG-RLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       935 ~~~~a~~~~~~~~~~-r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+|.++|.+.. +.+ .+.+++..+.+++|+..++..+...++..
T Consensus       132 ~iIli~n~~~~-~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~  175 (482)
T PRK04195        132 PIILTANDPYD-PSLRELRNACLMIEFKRLSTRSIVPVLKRICRK  175 (482)
T ss_pred             CEEEeccCccc-cchhhHhccceEEEecCCCHHHHHHHHHHHHHH
Confidence            35556666533 344 67788889999999999999998887753

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=96.76  E-value=0.001  Score=66.85  Aligned_cols=103  Identities=18%  Similarity=0.313  Sum_probs=57.4

Q ss_pred             EEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEec-CCCCChhhcccc--ccCCCCC--CccCHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIIN-PKSITMGQLYGE--FDSASHE--WRDGILAKTFRE 1428 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~in-p~~~t~~eL~G~--~~~~t~e--W~DG~l~~~lR~ 1428 (1513)
                      |+|.|+||.|||++++.||++++.              .+.+|. ..-+..+++.|.  +++.+++  |..|.+.     
T Consensus         2 vLleg~PG~GKT~la~~lA~~~~~--------------~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-----   62 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSLGL--------------SFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-----   62 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHTT----------------EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT------
T ss_pred             EeeECCCccHHHHHHHHHHHHcCC--------------ceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-----
Confidence            799999999999999999999763              334442 233668999996  5544443  5566543     


Q ss_pred             hhccCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecC
Q psy4730        1429 MAVSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN 1486 (1513)
Q Consensus      1429 ~~~~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~ 1486 (1513)
                              ..++++|.  -..|..--+|=.++. .+..++ .|+..++|+.+.+ +.|+|
T Consensus        63 --------~~ill~DEiNrappktQsAlLeam~-Er~Vt~-~g~~~~lp~pf~V-iATqN  111 (131)
T PF07726_consen   63 --------TNILLADEINRAPPKTQSALLEAME-ERQVTI-DGQTYPLPDPFFV-IATQN  111 (131)
T ss_dssp             --------SSEEEEETGGGS-HHHHHHHHHHHH-HSEEEE-TTEEEE--SS-EE-EEEE-
T ss_pred             --------hceeeecccccCCHHHHHHHHHHHH-cCeEEe-CCEEEECCCcEEE-EEecC
Confidence                    25888894  334433222222222 456666 6889999987554 55555

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=96.75  E-value=0.0051  Score=78.27  Aligned_cols=142  Identities=19%  Similarity=0.208  Sum_probs=86.6

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCC--C----hhhcccccc-CCCC----CC-
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI--T----MGQLYGEFD-SASH----EW- 1417 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~--t----~~eL~G~~~-~~t~----eW- 1417 (1513)
                      ...+|+|+||||||||++.+.+.+...+......    ...-....+|+.+.  +    .+.++|+.+ |...    -. 
T Consensus        85 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~----~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~  160 (531)
T TIGR02902        85 NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPF----KEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGI  160 (531)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCc----CCCCCEEEEccccccCCccccchhhcCCcccchhcccccccc
Confidence            3469999999999999999999765443211100    00123455555431  1    235666532 1100    01 


Q ss_pred             ------ccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceee-----cCCCe----------eec
Q psy4730        1418 ------RDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCL-----INGEI----------IKM 1474 (1513)
Q Consensus      1418 ------~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L-----~nGe~----------i~~ 1474 (1513)
                            ..|.+.    +      ....-+++|  +.+++...+.|-.+|+|.+...-     ++++.          -..
T Consensus       161 ~g~~~~~~G~l~----~------a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (531)
T TIGR02902       161 AGIPQPKPGAVT----R------AHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGL  230 (531)
T ss_pred             CCcccccCchhh----c------cCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCc
Confidence                  122221    1      233678899  67888888888888877654322     11111          135


Q ss_pred             CCCCeEEEeec-CCCCCCcchhhccEEEEeeC
Q psy4730        1475 SNTMNLIFECE-NLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1475 ~~~~~~iFE~~-~l~~asPatvsRcg~v~~~~ 1505 (1513)
                      |.+++++.-|+ ++....||..|||-.|+|.+
T Consensus       231 ~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~p  262 (531)
T TIGR02902       231 PADFRLIGATTRNPEEIPPALRSRCVEIFFRP  262 (531)
T ss_pred             ccceEEEEEecCCcccCChHHhhhhheeeCCC
Confidence            77889988875 67889999999999998876

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=96.75  E-value=0.0025  Score=80.40  Aligned_cols=125  Identities=14%  Similarity=0.177  Sum_probs=73.3

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhh-ccccccc---------ceeEEEecCCCCChhhccccccCCCCCCcc
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-SATMKEF---------KTGYKIINPKSITMGQLYGEFDSASHEWRD 1419 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~-~~~~~~~---------~~~~~~inp~~~t~~eL~G~~~~~t~eW~D 1419 (1513)
                      ..|+.++.||+|+||||+.+.+|+++.-..... .++..|.         ...++.+++.                 +.-
T Consensus        37 l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaa-----------------s~i   99 (605)
T PRK05896         37 LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAA-----------------SNN   99 (605)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccc-----------------ccc
Confidence            458999999999999999999999986322111 1111110         1122222221                 112


Q ss_pred             CHHHHHHHHh----hccC-CCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCc
Q psy4730        1420 GILAKTFREM----AVST-TPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASP 1492 (1513)
Q Consensus      1420 G~l~~~lR~~----~~~~-~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asP 1492 (1513)
                      |+  .-+|+.    ...+ ...++-+|+|.  .+.+.-..+|-..|++             .|+++.+||-+++.....|
T Consensus       100 gV--d~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE-------------Pp~~tvfIL~Tt~~~KLl~  164 (605)
T PRK05896        100 GV--DEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE-------------PPKHVVFIFATTEFQKIPL  164 (605)
T ss_pred             CH--HHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHh-------------CCCcEEEEEECCChHhhhH
Confidence            21  223332    2111 23567899995  2233222333333333             3667888888888888888


Q ss_pred             chhhccEEEEeeCC
Q psy4730        1493 ATVSRVGMIYFELK 1506 (1513)
Q Consensus      1493 atvsRcg~v~~~~~ 1506 (1513)
                      +..|||-.+.|.+-
T Consensus       165 TI~SRcq~ieF~~L  178 (605)
T PRK05896        165 TIISRCQRYNFKKL  178 (605)
T ss_pred             HHHhhhhhcccCCC
Confidence            88999999988653

>PF05729 NACHT: NACHT domain

Probab=96.75  E-value=0.0034  Score=66.80  Aligned_cols=64  Identities=17%  Similarity=0.286  Sum_probs=44.1

Q ss_pred             CCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhh
Q psy4730         903 GAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLD  977 (1513)
Q Consensus       903 ~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~  977 (1513)
                      +.++..++|++++....           ..++.++.++.|....--.+.+.....+.+.+++.+++.+.+..++.
T Consensus       101 ~~~~~~~~l~~l~~~~~-----------~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~  164 (166)
T PF05729_consen  101 ERQRLLDLLSQLLPQAL-----------PPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLRKYFS  164 (166)
T ss_pred             HHHHHHHHHHHHhhhcc-----------CCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHHHHhh
Confidence            45677888888887421           12456677777652222445555558889999999999999888754

>KOG0478|consensus

Probab=96.74  E-value=0.0075  Score=74.73  Aligned_cols=98  Identities=22%  Similarity=0.342  Sum_probs=65.5

Q ss_pred             CCccccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccccceEEecCceEEEEEecCC---CCCCC------CCchh
Q psy4730        1122 PGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPG---YAGRT------ELPDN 1192 (1513)
Q Consensus      1122 ~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g~~i~~~p~~~iFiTmNp~---y~gr~------~LP~n 1192 (1513)
                      .|.-+|+|||+.++...-|++-+-.+       +.--++-.-|---.+|-.|.|.+.-||-   |--++      .||+.
T Consensus       526 D~GiCCIDEFDKM~dStrSvLhEvME-------QQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~Lppt  598 (804)
T KOG0478|consen  526 DNGICCIDEFDKMSDSTRSVLHEVME-------QQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPT  598 (804)
T ss_pred             CCceEEchhhhhhhHHHHHHHHHHHH-------HhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChh
Confidence            56678999999999888776633221       1111122223446788999999999992   53332      58999


Q ss_pred             HHhhhhcccccCCChHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Q psy4730        1193 LKVLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLC 1237 (1513)
Q Consensus      1193 Lk~lFR~v~~~~PD~~~I~ei~L~~~GF~~a~~la~ki~~~~~l~ 1237 (1513)
                      |-+.|--|..+.-+..-           ...+.||.+|+.+|-.-
T Consensus       599 LLSRFDLIylllD~~DE-----------~~Dr~La~HivsLy~e~  632 (804)
T KOG0478|consen  599 LLSRFDLIFLLLDKPDE-----------RSDRRLADHIVALYPET  632 (804)
T ss_pred             hhhhhcEEEEEecCcch-----------hHHHHHHHHHHHhcccc
Confidence            99999998876332221           13467899999988664

>PRK05642 DNA replication initiation factor; Validated

Probab=96.72  E-value=0.0012  Score=75.16  Aligned_cols=41  Identities=5%  Similarity=0.098  Sum_probs=32.7

Q ss_pred             EEEEeecCC--CCCCChhhhccc---eEeecCCCChHHHHHHHHHH
Q psy4730         935 IYITAMIPT--MNTITGRLLRHM---NIISIDSFNEATLSKIFTSV  975 (1513)
Q Consensus       935 ~~~~a~~~~--~~~~~~r~~~~f---~~~~~~~~~~~~l~~i~~~~  975 (1513)
                      .+++|..+|  .....|++.+||   .++.+.+|+.+++..|....
T Consensus       133 ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k  178 (234)
T PRK05642        133 LLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR  178 (234)
T ss_pred             EEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence            456666555  455689999999   88999999999999988753

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=96.72  E-value=0.0017  Score=79.76  Aligned_cols=46  Identities=22%  Similarity=0.252  Sum_probs=36.6

Q ss_pred             ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      ++.+|+|+|.+ ..++|.++|  ||. .+.++.|+.++...|+..++..+
T Consensus       322 ~V~VI~ATNr~-d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~  370 (438)
T PTZ00361        322 DVKVIMATNRI-ESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM  370 (438)
T ss_pred             CeEEEEecCCh-HHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence            67788888865 467888886  664 59999999999999999876543

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=96.72  E-value=0.01  Score=75.14  Aligned_cols=42  Identities=17%  Similarity=0.173  Sum_probs=32.7

Q ss_pred             EEeecCC--CCCCChhhhccce---EeecCCCChHHHHHHHHHHhhh
Q psy4730         937 ITAMIPT--MNTITGRLLRHMN---IISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       937 ~~a~~~~--~~~~~~r~~~~f~---~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      +++-.+|  ...+.+||.+||.   ++.+..|+.++...|.......
T Consensus       415 ITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~  461 (617)
T PRK14086        415 LSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQ  461 (617)
T ss_pred             EecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh
Confidence            3444455  4579999999995   4889999999999999986543

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.71  E-value=0.0076  Score=76.77  Aligned_cols=134  Identities=22%  Similarity=0.278  Sum_probs=77.2

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHHHhHhhhh-cccccccceeEEEecCC---CCChhhccccccCCCCCCccCHHHH
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-SATMKEFKTGYKIINPK---SITMGQLYGEFDSASHEWRDGILAK 1424 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~-~~~~~~~~~~~~~inp~---~~t~~eL~G~~~~~t~eW~DG~l~~ 1424 (1513)
                      +..|..++.||+|+||||+.++++++++-..+.. .++..|..  +..|++.   +.+.-+    +|..+.   -|  ..
T Consensus        33 r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~--C~~i~~~~~~~~dvie----idaas~---~g--vd  101 (584)
T PRK14952         33 RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES--CVALAPNGPGSIDVVE----LDAASH---GG--VD  101 (584)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH--HHHhhcccCCCceEEE----eccccc---cC--HH
Confidence            3467899999999999999999999987322111 11111111  1122211   111111    111110   02  12


Q ss_pred             HHHHhh----cc-CCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhc
Q psy4730        1425 TFREMA----VS-TTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSR 1497 (1513)
Q Consensus      1425 ~lR~~~----~~-~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsR 1497 (1513)
                      -+|+..    .. .....+-+|+|.  -+..   +..|.+|.     +|-+     .|+++.|||-|++.....|+-.||
T Consensus       102 ~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~---~A~NALLK-----~LEE-----pp~~~~fIL~tte~~kll~TI~SR  168 (584)
T PRK14952        102 DTRELRDRAFYAPAQSRYRIFIVDEAHMVTT---AGFNALLK-----IVEE-----PPEHLIFIFATTEPEKVLPTIRSR  168 (584)
T ss_pred             HHHHHHHHHHhhhhcCCceEEEEECCCcCCH---HHHHHHHH-----HHhc-----CCCCeEEEEEeCChHhhHHHHHHh
Confidence            234321    11 134678999995  2333   45666541     1111     567999999999998888888999


Q ss_pred             cEEEEeeCC
Q psy4730        1498 VGMIYFELK 1506 (1513)
Q Consensus      1498 cg~v~~~~~ 1506 (1513)
                      |..+.|.+-
T Consensus       169 c~~~~F~~l  177 (584)
T PRK14952        169 THHYPFRLL  177 (584)
T ss_pred             ceEEEeeCC
Confidence            999998753

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=96.69  E-value=0.0047  Score=79.48  Aligned_cols=84  Identities=23%  Similarity=0.374  Sum_probs=67.8

Q ss_pred             HHHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC------------------------
Q psy4730         888 EMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------------------------  943 (1513)
Q Consensus       888 ~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------------------------  943 (1513)
                      .+++|++-.+-+|      ++.++=|++|+|-+-|.+. ..+...|+.+|.+.|-.                        
T Consensus       596 ViLlDEIEKAHpd------V~nilLQVlDdGrLTD~~G-r~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~  668 (786)
T COG0542         596 VILLDEIEKAHPD------VFNLLLQVLDDGRLTDGQG-RTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVM  668 (786)
T ss_pred             EEEechhhhcCHH------HHHHHHHHhcCCeeecCCC-CEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHH
Confidence            4567999888877      8999999999999988764 55667788888777642                        


Q ss_pred             ---CCCCChhhhccce-EeecCCCChHHHHHHHHHHhhh
Q psy4730         944 ---MNTITGRLLRHMN-IISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       944 ---~~~~~~r~~~~f~-~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                         ++..+|.|++|+. ++...+.+.+.+.+|....|..
T Consensus       669 ~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~  707 (786)
T COG0542         669 EELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNR  707 (786)
T ss_pred             HHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHH
Confidence               3467888999998 8999999999999999887654

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=96.69  E-value=0.0074  Score=71.33  Aligned_cols=142  Identities=15%  Similarity=0.106  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhccccc---------ccceeEEEecCCCCChhhccc
Q psy4730        1338 IEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMK---------EFKTGYKIINPKSITMGQLYG 1408 (1513)
Q Consensus      1338 ~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~---------~~~~~~~~inp~~~t~~eL~G 1408 (1513)
                      -.+..+.++.-+..|+.++.||.|+||+++.+.+|+++.-......+++.         +.+.+++.|.|..-.      
T Consensus        12 ~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~------   85 (319)
T PRK06090         12 WQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEG------   85 (319)
T ss_pred             HHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCC------
Confidence            34444555556677899999999999999999999998643221112221         234556677663210      


Q ss_pred             cccCCCCCCccCHHHHHHHHhhc-----cCCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEe
Q psy4730        1409 EFDSASHEWRDGILAKTFREMAV-----STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFE 1483 (1513)
Q Consensus      1409 ~~~~~t~eW~DG~l~~~lR~~~~-----~~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE 1483 (1513)
                            .    .+=..-+|+...     ......+.+|+|+ +|..=.++-|++|   |+  |   |  ..|+++.||+-
T Consensus        86 ------~----~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~-ae~m~~~AaNaLL---Kt--L---E--EPp~~t~fiL~  144 (319)
T PRK06090         86 ------K----SITVEQIRQCNRLAQESSQLNGYRLFVIEP-ADAMNESASNALL---KT--L---E--EPAPNCLFLLV  144 (319)
T ss_pred             ------C----cCCHHHHHHHHHHHhhCcccCCceEEEecc-hhhhCHHHHHHHH---HH--h---c--CCCCCeEEEEE
Confidence                  0    011234454321     1234678888886 2333344556665   11  1   1  14778999999


Q ss_pred             ecCCCCCCcchhhccEEEEeeCC
Q psy4730        1484 CENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1484 ~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
                      +++....-|.-+|||-.+.|.+-
T Consensus       145 t~~~~~lLpTI~SRCq~~~~~~~  167 (319)
T PRK06090        145 THNQKRLLPTIVSRCQQWVVTPP  167 (319)
T ss_pred             ECChhhChHHHHhcceeEeCCCC
Confidence            99999999999999999998764

>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]

Probab=96.68  E-value=0.014  Score=71.55  Aligned_cols=235  Identities=21%  Similarity=0.232  Sum_probs=130.9

Q ss_pred             CCccccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeeccccccChhHHHHHHHHHhh
Q psy4730         704 RPSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLD  783 (1513)
Q Consensus       704 ~~~~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t~~~~~q~~i~~~~~  783 (1513)
                      .|.+++-......+.....+..-..+-+||+.|+|||||...++..=+..+...--...+|+.+--     ..++++-|-
T Consensus       243 ~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP-----e~LlESELF  317 (560)
T COG3829         243 TFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP-----ETLLESELF  317 (560)
T ss_pred             chhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC-----HHHHHHHHh
Confidence            355666666677788888888999999999999999999988876644333222222344554433     234555543


Q ss_pred             hhccCCCCCC--CCceEEEEecccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCcCCCCCChhHHH
Q psy4730         784 RRRKGVYGPA--MGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELI  861 (1513)
Q Consensus       784 ~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  861 (1513)
                      ---+|.|-..  .||+                                       |+|           +++.-+     
T Consensus       318 Gye~GAFTGA~~~GK~---------------------------------------Glf-----------E~A~gG-----  342 (560)
T COG3829         318 GYEKGAFTGASKGGKP---------------------------------------GLF-----------ELANGG-----  342 (560)
T ss_pred             CcCCccccccccCCCC---------------------------------------cce-----------eeccCC-----
Confidence            3333333111  1111                                       001           111111     


Q ss_pred             HHHHHHHhhhcccchhHHHHHHHHHHHHHhhccC-CCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEee
Q psy4730         862 EQIKINLAKRNAQATDWYIEKIIQVYEMILDDLN-MPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAM  940 (1513)
Q Consensus       862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~n-~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~  940 (1513)
                                                .+|+|+++ ||..=      ---|||-|-|. .|...+..+ ..-.|+++|||+
T Consensus       343 --------------------------TLFLDEIgempl~L------QaKLLRVLQEk-ei~rvG~t~-~~~vDVRIIAAT  388 (560)
T COG3829         343 --------------------------TLFLDEIGEMPLPL------QAKLLRVLQEK-EIERVGGTK-PIPVDVRIIAAT  388 (560)
T ss_pred             --------------------------eEEehhhccCCHHH------HHHHHHHHhhc-eEEecCCCC-ceeeEEEEEecc
Confidence                                      26789999 77611      13578888774 333333222 223599999999


Q ss_pred             cCC------CCCCChhhhccceEeecCCCChH----HHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhhcc
Q psy4730         941 IPT------MNTITGRLLRHMNIISIDSFNEA----TLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVF 1010 (1513)
Q Consensus       941 ~~~------~~~~~~r~~~~f~~~~~~~~~~~----~l~~i~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1513)
                      |-+      ....-.-|.=|-+++.+.=|.-.    ++-.+...++.. +...|...++.++....++.           
T Consensus       389 N~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k-~s~~~~~~v~~ls~~a~~~L-----------  456 (560)
T COG3829         389 NRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDK-FSRRYGRNVKGLSPDALALL-----------  456 (560)
T ss_pred             CcCHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHH-HHHHcCCCcccCCHHHHHHH-----------
Confidence            986      23344455666688766655532    555555554443 22234444444433333221           


Q ss_pred             CCCCCCCccccchhhHHHHHhhhcc-cCCcccCChhhHH
Q psy4730        1011 LPIPSKSHYVFNLRDFAKVIMGLTQ-LPASHCKAPDKMY 1048 (1513)
Q Consensus      1011 ~~~~~~~hy~fnlrd~~~~~~g~~~-~~~~~~~~~~~~~ 1048 (1513)
                          -+.+|==|.|.|.+++..... ...+...+.+.+.
T Consensus       457 ----~~y~WPGNVRELeNviER~v~~~~~~~~I~~~~lp  491 (560)
T COG3829         457 ----LRYDWPGNVRELENVIERAVNLVESDGLIDADDLP  491 (560)
T ss_pred             ----HhCCCCchHHHHHHHHHHHHhccCCcceeehhhcc
Confidence                123444499999999988773 4444444444333

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=96.68  E-value=0.0082  Score=78.47  Aligned_cols=44  Identities=16%  Similarity=0.311  Sum_probs=36.1

Q ss_pred             eEEEEeecCC-CCCCChhhhccceEeecCCCChHHHHHHHHHHhh
Q psy4730         934 IIYITAMIPT-MNTITGRLLRHMNIISIDSFNEATLSKIFTSVLD  977 (1513)
Q Consensus       934 ~~~~~a~~~~-~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~  977 (1513)
                      +.+++++.++ -..+.+++++|..++.+++++.+++..|...++.
T Consensus       138 IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~  182 (725)
T PRK13341        138 ITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQ  182 (725)
T ss_pred             EEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHH
Confidence            4566666543 4568899999999999999999999999998876

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=96.68  E-value=0.0077  Score=77.01  Aligned_cols=127  Identities=16%  Similarity=0.196  Sum_probs=77.6

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccc---------cceeEEEecCCCCChhhccccccCCCCCCc
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWR 1418 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~ 1418 (1513)
                      +..|+.++.||+|+||||+.+.++++++-.... ..++..|         ...++..|++.              +   .
T Consensus        36 ~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaa--------------s---~   98 (559)
T PRK05563         36 KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAA--------------S---N   98 (559)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeecc--------------c---c
Confidence            456899999999999999999999998743221 1111111         11222223321              1   1


Q ss_pred             cCHHHHHHHHhh----cc-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcc
Q psy4730        1419 DGILAKTFREMA----VS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPA 1493 (1513)
Q Consensus      1419 DG~l~~~lR~~~----~~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPa 1493 (1513)
                      .|  ..-+|+..    .. .....+.+|+|. +|-.=-+..|.+|.     +|-     ..|+++.|||-+++.....|+
T Consensus        99 ~~--vd~ir~i~~~v~~~p~~~~~kViIIDE-~~~Lt~~a~naLLK-----tLE-----epp~~~ifIlatt~~~ki~~t  165 (559)
T PRK05563         99 NG--VDEIRDIRDKVKYAPSEAKYKVYIIDE-VHMLSTGAFNALLK-----TLE-----EPPAHVIFILATTEPHKIPAT  165 (559)
T ss_pred             CC--HHHHHHHHHHHhhCcccCCeEEEEEEC-cccCCHHHHHHHHH-----Hhc-----CCCCCeEEEEEeCChhhCcHH
Confidence            12  23334332    11 234679999997 33222356666653     111     127788999999888888888


Q ss_pred             hhhccEEEEeeC
Q psy4730        1494 TVSRVGMIYFEL 1505 (1513)
Q Consensus      1494 tvsRcg~v~~~~ 1505 (1513)
                      ..|||..+-|.+
T Consensus       166 I~SRc~~~~f~~  177 (559)
T PRK05563        166 ILSRCQRFDFKR  177 (559)
T ss_pred             HHhHheEEecCC
Confidence            899999988754

>PRK13531 regulatory ATPase RavA; Provisional

Probab=96.67  E-value=0.0092  Score=73.32  Aligned_cols=34  Identities=24%  Similarity=0.357  Sum_probs=28.3

Q ss_pred             HHHHHhcCCccceeccCCCccchHhHHHHHhccC
Q psy4730         721 FINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       721 ~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~  754 (1513)
                      ++-..+..+.+|||.||||||||+++..+.....
T Consensus        31 lll~aalag~hVLL~GpPGTGKT~LAraLa~~~~   64 (498)
T PRK13531         31 LCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQ   64 (498)
T ss_pred             HHHHHHccCCCEEEECCCChhHHHHHHHHHHHhc
Confidence            3444567899999999999999999998887653

>PLN03025 replication factor C subunit; Provisional

Probab=96.67  E-value=0.0081  Score=71.79  Aligned_cols=44  Identities=9%  Similarity=0.153  Sum_probs=34.8

Q ss_pred             eEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         934 IIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       934 ~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      +.|+.++|++ ..+.+.+.+|...+.+.+|+.+++......++..
T Consensus       130 t~~il~~n~~-~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~  173 (319)
T PLN03025        130 TRFALACNTS-SKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEA  173 (319)
T ss_pred             ceEEEEeCCc-cccchhHHHhhhcccCCCCCHHHHHHHHHHHHHH
Confidence            3466777764 3566789999999999999999999888887653

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=96.65  E-value=0.0075  Score=71.95  Aligned_cols=146  Identities=16%  Similarity=0.200  Sum_probs=89.8

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHHHhHhhh--hcccccc---------cceeEEEecCCCCChhhccccccC----C
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK--KSATMKE---------FKTGYKIINPKSITMGQLYGEFDS----A 1413 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~--~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~----~ 1413 (1513)
                      +..|+.++.||+|+||+++.+.+|+++.--...  ..++..|         .+.+++.+.|..... +..|.-|.    +
T Consensus        19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~-~~~~~~~~~~~~~   97 (342)
T PRK06964         19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAA-EAPGAADEAKEAD   97 (342)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccc-cccccccccccch
Confidence            567999999999999999999999998642211  1122222         345567777753211 11111110    0


Q ss_pred             ---CCCC----ccCHHHHHHHHhhc----c-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEE
Q psy4730        1414 ---SHEW----RDGILAKTFREMAV----S-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLI 1481 (1513)
Q Consensus      1414 ---t~eW----~DG~l~~~lR~~~~----~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~i 1481 (1513)
                         .+..    ...+-..-+|+...    . .....+-+|+|. +|..=.++-|++|   |+|=       ..|+++.||
T Consensus        98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~-ae~m~~~AaNaLL---KtLE-------EPp~~t~fi  166 (342)
T PRK06964         98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYP-AEALNVAAANALL---KTLE-------EPPPGTVFL  166 (342)
T ss_pred             hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEec-hhhcCHHHHHHHH---HHhc-------CCCcCcEEE
Confidence               0011    11233455565432    2 234567788874 3333345566775   2221       368899999


Q ss_pred             EeecCCCCCCcchhhccEEEEeeCC
Q psy4730        1482 FECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1482 FE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
                      +-+++....-|.-+|||-.|+|.+-
T Consensus       167 L~t~~~~~LLpTI~SRcq~i~~~~~  191 (342)
T PRK06964        167 LVSARIDRLLPTILSRCRQFPMTVP  191 (342)
T ss_pred             EEECChhhCcHHHHhcCEEEEecCC
Confidence            9999999999999999999999764

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=96.65  E-value=0.0065  Score=68.85  Aligned_cols=27  Identities=22%  Similarity=0.399  Sum_probs=23.2

Q ss_pred             cCCccceeccCCCccchHhHHHHHhcc
Q psy4730         727 QNDVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       727 ~~~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      ..+.|++|+||+|||||+++..+....
T Consensus        40 ~~~~~~~l~G~~G~GKT~La~ai~~~~   66 (227)
T PRK08903         40 VADRFFYLWGEAGSGRSHLLQALVADA   66 (227)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            456799999999999999999887654

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=96.63  E-value=0.0032  Score=78.39  Aligned_cols=135  Identities=17%  Similarity=0.199  Sum_probs=73.4

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhh--cccccccceeEEEec-CCCCChhhccccccCCCCCCccCHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK--SATMKEFKTGYKIIN-PKSITMGQLYGEFDSASHEWRDGILAKTF 1426 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~--~~~~~~~~~~~~~in-p~~~t~~eL~G~~~~~t~eW~DG~l~~~l 1426 (1513)
                      ..|+.++.||+|+||||+.+.+++++.-.....  .++..|.  .+..+. ....+.-++-|.       ..-|+  ..+
T Consensus        38 i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~--~C~~i~~~~~~d~~~i~g~-------~~~gi--d~i  106 (451)
T PRK06305         38 AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA--SCKEISSGTSLDVLEIDGA-------SHRGI--EDI  106 (451)
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH--HHHHHhcCCCCceEEeecc-------ccCCH--HHH
Confidence            357899999999999999999999986421110  0111000  000000 000011111110       11121  234


Q ss_pred             HHhhc-----cCCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEE
Q psy4730        1427 REMAV-----STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMI 1501 (1513)
Q Consensus      1427 R~~~~-----~~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v 1501 (1513)
                      |+...     .....++.||+|.. |..--+..|.+|.-     +-+     .|+++.+||-+++.....|+-.|||.+|
T Consensus       107 r~i~~~l~~~~~~~~~kvvIIdea-d~lt~~~~n~LLk~-----lEe-----p~~~~~~Il~t~~~~kl~~tI~sRc~~v  175 (451)
T PRK06305        107 RQINETVLFTPSKSRYKIYIIDEV-HMLTKEAFNSLLKT-----LEE-----PPQHVKFFLATTEIHKIPGTILSRCQKM  175 (451)
T ss_pred             HHHHHHHHhhhhcCCCEEEEEecH-HhhCHHHHHHHHHH-----hhc-----CCCCceEEEEeCChHhcchHHHHhceEE
Confidence            43321     12356799999972 22222344444311     111     3567888998888888989999999999


Q ss_pred             EeeCC
Q psy4730        1502 YFELK 1506 (1513)
Q Consensus      1502 ~~~~~ 1506 (1513)
                      .|.+-
T Consensus       176 ~f~~l  180 (451)
T PRK06305        176 HLKRI  180 (451)
T ss_pred             eCCCC
Confidence            98653

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=96.63  E-value=0.0075  Score=80.71  Aligned_cols=83  Identities=18%  Similarity=0.325  Sum_probs=63.3

Q ss_pred             HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC-------------------------
Q psy4730         889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT-------------------------  943 (1513)
Q Consensus       889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~-------------------------  943 (1513)
                      +++||+-...      +...++|-|++++|.+-|... ..+...+..+|.+.|-+                         
T Consensus       672 vllDEieka~------~~v~~~Llq~ld~g~l~d~~G-r~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~  744 (852)
T TIGR03345       672 VLLDEVEKAH------PDVLELFYQVFDKGVMEDGEG-REIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALR  744 (852)
T ss_pred             EEEechhhcC------HHHHHHHHHHhhcceeecCCC-cEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHH
Confidence            5569985333      457899999999999887654 46677788888876632                         


Q ss_pred             ---CCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         944 ---MNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       944 ---~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                         +....|.|++|+.++.+.+.+.+++.+|....+..
T Consensus       745 ~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~  782 (852)
T TIGR03345       745 PELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDR  782 (852)
T ss_pred             HHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHH
Confidence               12367888999999999999999999999887654

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=96.61  E-value=0.0035  Score=72.71  Aligned_cols=27  Identities=22%  Similarity=0.320  Sum_probs=24.1

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDI 1378 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l 1378 (1513)
                      ..++|.|||||||||+.+.+++.+..+
T Consensus        43 ~~vll~GppGtGKTtlA~~ia~~l~~~   69 (261)
T TIGR02881        43 LHMIFKGNPGTGKTTVARILGKLFKEM   69 (261)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            478999999999999999999988654

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=96.60  E-value=0.007  Score=77.13  Aligned_cols=134  Identities=16%  Similarity=0.204  Sum_probs=75.7

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhh-cccccccceeEEEecCC-CCChhhccccccCCCCCCccCHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-SATMKEFKTGYKIINPK-SITMGQLYGEFDSASHEWRDGILAKTFR 1427 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~-~~~~~~~~~~~~~inp~-~~t~~eL~G~~~~~t~eW~DG~l~~~lR 1427 (1513)
                      ..|+.++.||+|+||||+.+.|++++.--.+.. .+++.|..  +..|+.. +.+..++-|.       ...|  ..-+|
T Consensus        37 i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~--C~~i~~~~~~dv~~idga-------s~~~--vddIr  105 (563)
T PRK06647         37 IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS--CKSIDNDNSLDVIEIDGA-------SNTS--VQDVR  105 (563)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH--HHHHHcCCCCCeEEecCc-------ccCC--HHHHH
Confidence            457899999999999999999999987321110 01111100  0001100 1111111110       1112  23344


Q ss_pred             Hhh----cc-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEE
Q psy4730        1428 EMA----VS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIY 1502 (1513)
Q Consensus      1428 ~~~----~~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~ 1502 (1513)
                      +..    .. .....+-+|+|. ++-.--+..|.+|..        -|  ..|+++.+||-++++....|+-.|||..+.
T Consensus       106 ~l~e~~~~~p~~~~~KVvIIDE-a~~Ls~~a~naLLK~--------LE--epp~~~vfI~~tte~~kL~~tI~SRc~~~~  174 (563)
T PRK06647        106 QIKEEIMFPPASSRYRVYIIDE-VHMLSNSAFNALLKT--------IE--EPPPYIVFIFATTEVHKLPATIKSRCQHFN  174 (563)
T ss_pred             HHHHHHHhchhcCCCEEEEEEC-hhhcCHHHHHHHHHh--------hc--cCCCCEEEEEecCChHHhHHHHHHhceEEE
Confidence            432    11 134668888886 222223455555321        22  257889999999999889889999999998


Q ss_pred             eeC
Q psy4730        1503 FEL 1505 (1513)
Q Consensus      1503 ~~~ 1505 (1513)
                      |.+
T Consensus       175 f~~  177 (563)
T PRK06647        175 FRL  177 (563)
T ss_pred             ecC
Confidence            865

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=96.59  E-value=0.0074  Score=75.64  Aligned_cols=86  Identities=21%  Similarity=0.334  Sum_probs=57.3

Q ss_pred             HhhccCCCCCccCCCCCh--HHHHHHHHhcCCccccCCceeeeecceEEEEeecCCCCCCChhhhccceEeecCCCChHH
Q psy4730         890 ILDDLNMPQKETYGAQPA--VELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEAT  967 (1513)
Q Consensus       890 ~~dd~n~p~~~~~~~q~~--le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~  967 (1513)
                      ++|++-.-.++.+|.+..  ||.|===. ...|-|-=--....+.++.|+|+.|. -++||+-|+-|.-++.+...+.+.
T Consensus       422 LLDEIDKm~ss~rGDPaSALLEVLDPEQ-N~~F~DhYLev~yDLS~VmFiaTANs-l~tIP~PLlDRMEiI~lsgYt~~E  499 (782)
T COG0466         422 LLDEIDKMGSSFRGDPASALLEVLDPEQ-NNTFSDHYLEVPYDLSKVMFIATANS-LDTIPAPLLDRMEVIRLSGYTEDE  499 (782)
T ss_pred             EeechhhccCCCCCChHHHHHhhcCHhh-cCchhhccccCccchhheEEEeecCc-cccCChHHhcceeeeeecCCChHH
Confidence            468888777777775422  44331111 12232211112345678899887775 567999999999999999999999


Q ss_pred             HHHHHHHHhh
Q psy4730         968 LSKIFTSVLD  977 (1513)
Q Consensus       968 l~~i~~~~l~  977 (1513)
                      -..|-..+|-
T Consensus       500 Kl~IAk~~Li  509 (782)
T COG0466         500 KLEIAKRHLI  509 (782)
T ss_pred             HHHHHHHhcc
Confidence            8888887653

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=96.58  E-value=0.024  Score=67.79  Aligned_cols=45  Identities=24%  Similarity=0.225  Sum_probs=34.7

Q ss_pred             ccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhc
Q psy4730         708 LIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLN  752 (1513)
Q Consensus       708 ~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~  752 (1513)
                      ++-......+....+..+...+.|||++|++||||++++...-..
T Consensus         8 liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~   52 (326)
T PRK11608          8 LLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL   52 (326)
T ss_pred             cEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence            333344555666677778899999999999999999999877543

>PRK13531 regulatory ATPase RavA; Provisional

Probab=96.56  E-value=0.005  Score=75.54  Aligned_cols=138  Identities=12%  Similarity=0.186  Sum_probs=78.6

Q ss_pred             HHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHH
Q psy4730        1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILA 1423 (1513)
Q Consensus      1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~ 1423 (1513)
                      +..++.++..|+|.||||+|||++.+.|+.+...-.            .+..++....|..++||..+-.. .=.+|-+.
T Consensus        32 ll~aalag~hVLL~GpPGTGKT~LAraLa~~~~~~~------------~F~~~~~~fttp~DLfG~l~i~~-~~~~g~f~   98 (498)
T PRK13531         32 CLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNAR------------AFEYLMTRFSTPEEVFGPLSIQA-LKDEGRYQ   98 (498)
T ss_pred             HHHHHccCCCEEEECCCChhHHHHHHHHHHHhcccC------------cceeeeeeecCcHHhcCcHHHhh-hhhcCchh
Confidence            444567889999999999999999999998875311            11112222124569999651100 00122222


Q ss_pred             HHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecC-CCC---CCcchhhc
Q psy4730        1424 KTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN-LEF---ASPATVSR 1497 (1513)
Q Consensus      1424 ~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~-l~~---asPatvsR 1497 (1513)
                      +. +.+   .-....-+++|  +...+.--..|=.++.+ +..+. .|+..++|.  ++++-++| |-.   .=+|..-|
T Consensus        99 r~-~~G---~L~~A~lLfLDEI~rasp~~QsaLLeam~E-r~~t~-g~~~~~lp~--rfiv~ATN~LPE~g~~leAL~DR  170 (498)
T PRK13531         99 RL-TSG---YLPEAEIVFLDEIWKAGPAILNTLLTAINE-RRFRN-GAHEEKIPM--RLLVTASNELPEADSSLEALYDR  170 (498)
T ss_pred             hh-cCC---ccccccEEeecccccCCHHHHHHHHHHHHh-CeEec-CCeEEeCCC--cEEEEECCCCcccCCchHHhHhh
Confidence            11 111   01112478889  67788777777777755 44554 677788774  55554443 211   00277778


Q ss_pred             cEEEEe
Q psy4730        1498 VGMIYF 1503 (1513)
Q Consensus      1498 cg~v~~ 1503 (1513)
                      . ++.+
T Consensus       171 F-liri  175 (498)
T PRK13531        171 M-LIRL  175 (498)
T ss_pred             E-EEEE
Confidence            7 5443

>PRK10865 protein disaggregation chaperone; Provisional

Probab=96.56  E-value=0.0085  Score=80.44  Aligned_cols=84  Identities=17%  Similarity=0.284  Sum_probs=62.2

Q ss_pred             HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC------------------------C
Q psy4730         889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------------------------M  944 (1513)
Q Consensus       889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------------------------~  944 (1513)
                      +++||+-...+      .....|-++++.|.+-|.. ...+...+..+|.++|-.                        +
T Consensus       674 LllDEieka~~------~v~~~Ll~ile~g~l~d~~-gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~  746 (857)
T PRK10865        674 ILLDEVEKAHP------DVFNILLQVLDDGRLTDGQ-GRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVS  746 (857)
T ss_pred             EEEeehhhCCH------HHHHHHHHHHhhCceecCC-ceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHc
Confidence            45688864443      3788999999998876643 345566677788888752                        2


Q ss_pred             CCCChhhhccc-eEeecCCCChHHHHHHHHHHhhhh
Q psy4730         945 NTITGRLLRHM-NIISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       945 ~~~~~r~~~~f-~~~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      +...|.|++|+ .++...+++.+++..|+...+...
T Consensus       747 ~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l  782 (857)
T PRK10865        747 HNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRL  782 (857)
T ss_pred             ccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHH
Confidence            45778999999 778889999999999998877553

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=96.55  E-value=0.014  Score=64.19  Aligned_cols=133  Identities=14%  Similarity=0.127  Sum_probs=74.5

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccc---------cceeEEEecCCCCChhhccccccCCCCCCc
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWR 1418 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~ 1418 (1513)
                      +..|.+++.||+|+|||++.+.+++.+..-... ..++..+         ....+..+.|..              ....
T Consensus        12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~--------------~~~~   77 (188)
T TIGR00678        12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG--------------QSIK   77 (188)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc--------------CcCC
Confidence            345789999999999999999999887532100 0000000         111223333321              1110


Q ss_pred             cCHHHHHHHHhhccC-CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhc
Q psy4730        1419 DGILAKTFREMAVST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSR 1497 (1513)
Q Consensus      1419 DG~l~~~lR~~~~~~-~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsR 1497 (1513)
                      -..+-.+++.....+ ...++-||+|. +|..=-+..|.+|+   .  |   |.  .|+++.++|-+.+.....|+..||
T Consensus        78 ~~~i~~i~~~~~~~~~~~~~kviiide-~~~l~~~~~~~Ll~---~--l---e~--~~~~~~~il~~~~~~~l~~~i~sr  146 (188)
T TIGR00678        78 VDQVRELVEFLSRTPQESGRRVVIIED-AERMNEAAANALLK---T--L---EE--PPPNTLFILITPSPEKLLPTIRSR  146 (188)
T ss_pred             HHHHHHHHHHHccCcccCCeEEEEEec-hhhhCHHHHHHHHH---H--h---cC--CCCCeEEEEEECChHhChHHHHhh
Confidence            011222233332222 34678899996 22211233344431   1  1   22  356888999888888999999999


Q ss_pred             cEEEEeeCC
Q psy4730        1498 VGMIYFELK 1506 (1513)
Q Consensus      1498 cg~v~~~~~ 1506 (1513)
                      |.+|.+.+-
T Consensus       147 ~~~~~~~~~  155 (188)
T TIGR00678       147 CQVLPFPPL  155 (188)
T ss_pred             cEEeeCCCC
Confidence            999988763

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=96.55  E-value=0.0096  Score=71.20  Aligned_cols=131  Identities=23%  Similarity=0.225  Sum_probs=83.4

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccc----------cccceeEEEecCCCCChhhccccccCCCCCCc
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATM----------KEFKTGYKIINPKSITMGQLYGEFDSASHEWR 1418 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~----------~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~ 1418 (1513)
                      +..|++++.||+|+||||+...||+.+.-.........          .+...+++.+||.......             
T Consensus        22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~-------------   88 (325)
T COG0470          22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID-------------   88 (325)
T ss_pred             CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc-------------
Confidence            35668999999999999999999999873221111000          0012356667766443211             


Q ss_pred             cCHHHHHHHHhhccC-----CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcc
Q psy4730        1419 DGILAKTFREMAVST-----TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPA 1493 (1513)
Q Consensus      1419 DG~l~~~lR~~~~~~-----~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPa 1493 (1513)
                        +....+|+.....     ....+-|++|. +|..=.++-|.+|   |++       ..-|.+..+++-+.+....-|.
T Consensus        89 --i~~~~vr~~~~~~~~~~~~~~~kviiide-ad~mt~~A~nall---k~l-------Eep~~~~~~il~~n~~~~il~t  155 (325)
T COG0470          89 --IIVEQVRELAEFLSESPLEGGYKVVIIDE-ADKLTEDAANALL---KTL-------EEPPKNTRFILITNDPSKILPT  155 (325)
T ss_pred             --chHHHHHHHHHHhccCCCCCCceEEEeCc-HHHHhHHHHHHHH---HHh-------ccCCCCeEEEEEcCChhhccch
Confidence              4456667665422     24568888886 3333334444442   111       1235678888888889999999


Q ss_pred             hhhccEEEEeeC
Q psy4730        1494 TVSRVGMIYFEL 1505 (1513)
Q Consensus      1494 tvsRcg~v~~~~ 1505 (1513)
                      -.|||.++.|.+
T Consensus       156 I~SRc~~i~f~~  167 (325)
T COG0470         156 IRSRCQRIRFKP  167 (325)
T ss_pred             hhhcceeeecCC
Confidence            999999999975

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.53  E-value=0.0051  Score=81.79  Aligned_cols=45  Identities=20%  Similarity=0.284  Sum_probs=37.2

Q ss_pred             cceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhh
Q psy4730         932 VDIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLD  977 (1513)
Q Consensus       932 ~~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~  977 (1513)
                      .++.++||+|.|. .|+|.++|  ||. .++++.|+.++...|+...+.
T Consensus       589 ~~v~vI~aTn~~~-~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~  636 (733)
T TIGR01243       589 SNVVVIAATNRPD-ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTR  636 (733)
T ss_pred             CCEEEEEeCCChh-hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhc
Confidence            3688899998765 58999997  885 599999999999999986544

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=96.52  E-value=0.0063  Score=76.40  Aligned_cols=125  Identities=17%  Similarity=0.180  Sum_probs=75.1

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHHHhHhhhh-cccccc---------cceeEEEecCCCCChhhccccccCCCCCCc
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-SATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWR 1418 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~-~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~ 1418 (1513)
                      ...|..++.||+|+||||+.+.|++++.--.+.. .++..|         ....+..+|.              .+.   
T Consensus        34 rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~elda--------------as~---   96 (535)
T PRK08451         34 RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDA--------------ASN---   96 (535)
T ss_pred             CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecc--------------ccc---
Confidence            3457789999999999999999999985321110 011100         0111111111              110   


Q ss_pred             cCHHHHHHHHhhc----cC-CCCceEEEEcCCCChHHHHhhhcc---cCCCCceeecCCCeeecCCCCeEEEeecCCCCC
Q psy4730        1419 DGILAKTFREMAV----ST-TPDRKWIMFDGPIDAVWIENMNTV---LDDNKKLCLINGEIIKMSNTMNLIFECENLEFA 1490 (1513)
Q Consensus      1419 DG~l~~~lR~~~~----~~-~~~~~WivfDG~~d~~wiE~LNsv---LDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~a 1490 (1513)
                      -|  ...+|+...    .+ ....+-+|+|.. |..--++.|.+   |++             .|+++.|||-+.+....
T Consensus        97 ~g--Id~IRelie~~~~~P~~~~~KVvIIDEa-d~Lt~~A~NALLK~LEE-------------pp~~t~FIL~ttd~~kL  160 (535)
T PRK08451         97 RG--IDDIRELIEQTKYKPSMARFKIFIIDEV-HMLTKEAFNALLKTLEE-------------PPSYVKFILATTDPLKL  160 (535)
T ss_pred             cC--HHHHHHHHHHHhhCcccCCeEEEEEECc-ccCCHHHHHHHHHHHhh-------------cCCceEEEEEECChhhC
Confidence            02  234555432    11 245688999962 22223444444   332             47789999999999888


Q ss_pred             CcchhhccEEEEeeCC
Q psy4730        1491 SPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1491 sPatvsRcg~v~~~~~ 1506 (1513)
                      .|+..|||..+.|.+-
T Consensus       161 ~~tI~SRc~~~~F~~L  176 (535)
T PRK08451        161 PATILSRTQHFRFKQI  176 (535)
T ss_pred             chHHHhhceeEEcCCC
Confidence            8999999999998763

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=96.52  E-value=0.0054  Score=71.85  Aligned_cols=119  Identities=16%  Similarity=0.183  Sum_probs=67.7

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
                      .++++.||||||||++.+.+++.+..++....       -.+..+++     .++.|.+-..+.    .-...++.++  
T Consensus        59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~-------~~~v~v~~-----~~l~~~~~g~~~----~~~~~~~~~a--  120 (284)
T TIGR02880        59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRK-------GHLVSVTR-----DDLVGQYIGHTA----PKTKEILKRA--  120 (284)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHHcCCccc-------ceEEEecH-----HHHhHhhcccch----HHHHHHHHHc--
Confidence            47999999999999999999998876432111       12334443     334433221111    1122333332  


Q ss_pred             cCCCCceEEEEcC-----------CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeec-----CCCCCCcchh
Q psy4730        1432 STTPDRKWIMFDG-----------PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE-----NLEFASPATV 1495 (1513)
Q Consensus      1432 ~~~~~~~WivfDG-----------~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~-----~l~~asPatv 1495 (1513)
                          ...-+++|.           +.....++.|..+||+.+             .++++|+-+.     .+-...|+.-
T Consensus       121 ----~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~-------------~~~~vI~a~~~~~~~~~~~~np~L~  183 (284)
T TIGR02880       121 ----MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR-------------DDLVVILAGYKDRMDSFFESNPGFS  183 (284)
T ss_pred             ----cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC-------------CCEEEEEeCCcHHHHHHHhhCHHHH
Confidence                114566773           123445677778887653             4556666542     2233579999


Q ss_pred             hccEE-EEeeC
Q psy4730        1496 SRVGM-IYFEL 1505 (1513)
Q Consensus      1496 sRcg~-v~~~~ 1505 (1513)
                      |||.. |.|++
T Consensus       184 sR~~~~i~fp~  194 (284)
T TIGR02880       184 SRVAHHVDFPD  194 (284)
T ss_pred             hhCCcEEEeCC
Confidence            99964 56654

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.49  E-value=0.019  Score=70.20  Aligned_cols=124  Identities=15%  Similarity=0.192  Sum_probs=70.6

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccC--HHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDG--ILAKTFR 1427 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG--~l~~~lR 1427 (1513)
                      ..|++++.||+|+|||++.+.+++.+..-... . +.......+..++.                 ....|  .+..++.
T Consensus        38 ~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~-~-~~~~~~~~~~~l~~-----------------~~~~~~~~i~~l~~   98 (367)
T PRK14970         38 LAQALLFCGPRGVGKTTCARILARKINQPGYD-D-PNEDFSFNIFELDA-----------------ASNNSVDDIRNLID   98 (367)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-C-CCCCCCcceEEecc-----------------ccCCCHHHHHHHHH
Confidence            35789999999999999999998877531100 0 00000111111111                 01111  2223333


Q ss_pred             Hhhcc-CCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEee
Q psy4730        1428 EMAVS-TTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFE 1504 (1513)
Q Consensus      1428 ~~~~~-~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~ 1504 (1513)
                      +.... ....++-|++|.  .+.+.-.+.+...|++             .|+++.+||.+++.....|+.-|||.+|.+.
T Consensus        99 ~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~-------------~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~  165 (367)
T PRK14970         99 QVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEE-------------PPAHAIFILATTEKHKIIPTILSRCQIFDFK  165 (367)
T ss_pred             HHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhC-------------CCCceEEEEEeCCcccCCHHHHhcceeEecC
Confidence            33222 234567899995  2333222333333332             2556788888888888889999999999887


Q ss_pred             C
Q psy4730        1505 L 1505 (1513)
Q Consensus      1505 ~ 1505 (1513)
                      +
T Consensus       166 ~  166 (367)
T PRK14970        166 R  166 (367)
T ss_pred             C
Confidence            6

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.49  E-value=0.011  Score=75.80  Aligned_cols=128  Identities=17%  Similarity=0.161  Sum_probs=73.8

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHHHhHhhhh---------cccccc---------cceeEEEecCCCCChhhccccc
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK---------SATMKE---------FKTGYKIINPKSITMGQLYGEF 1410 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~---------~~~~~~---------~~~~~~~inp~~~t~~eL~G~~ 1410 (1513)
                      +..|+.++.||+|+||||+.+.+|+++.-.....         .++..|         ...++..+++.+.         
T Consensus        36 ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~---------  106 (620)
T PRK14954         36 RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASN---------  106 (620)
T ss_pred             CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEeccccc---------
Confidence            4468999999999999999999999986422110         111111         1112222222110         


Q ss_pred             cCCCCCCccCHHHHHHHHhh----cc-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeec
Q psy4730        1411 DSASHEWRDGILAKTFREMA----VS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE 1485 (1513)
Q Consensus      1411 ~~~t~eW~DG~l~~~lR~~~----~~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~ 1485 (1513)
                              .|  ..-+|+..    .. ....++-+|+|. +|..-.+..|.+|.-     |-+     .|+++.+||-++
T Consensus       107 --------~~--vd~Ir~l~e~~~~~P~~~~~KVvIIdE-ad~Lt~~a~naLLK~-----LEe-----Pp~~tv~IL~t~  165 (620)
T PRK14954        107 --------NS--VDDIRQLRENVRYGPQKGRYRVYIIDE-VHMLSTAAFNAFLKT-----LEE-----PPPHAIFIFATT  165 (620)
T ss_pred             --------CC--HHHHHHHHHHHHhhhhcCCCEEEEEeC-hhhcCHHHHHHHHHH-----HhC-----CCCCeEEEEEeC
Confidence                    11  12333332    11 134678889986 222222344444421     000     456778888888


Q ss_pred             CCCCCCcchhhccEEEEeeCC
Q psy4730        1486 NLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1486 ~l~~asPatvsRcg~v~~~~~ 1506 (1513)
                      +....-|+..|||-+|.|.+-
T Consensus       166 ~~~kLl~TI~SRc~~vef~~l  186 (620)
T PRK14954        166 ELHKIPATIASRCQRFNFKRI  186 (620)
T ss_pred             ChhhhhHHHHhhceEEecCCC
Confidence            888888888999999998653

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=96.45  E-value=0.015  Score=75.33  Aligned_cols=144  Identities=20%  Similarity=0.263  Sum_probs=81.4

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC------hhhccccccCCCCCCccCHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT------MGQLYGEFDSASHEWRDGILAK 1424 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t------~~eL~G~~~~~t~eW~DG~l~~ 1424 (1513)
                      ...++|+|||||||||+.++++.......+....    ....+..+|...+.      ...++|...       ++....
T Consensus       175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~----~~~~fv~i~~~~l~~d~~~i~~~llg~~~-------~~~~~~  243 (615)
T TIGR02903       175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFA----EDAPFVEVDGTTLRWDPREVTNPLLGSVH-------DPIYQG  243 (615)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhhhhccCCccc----CCCCeEEEechhccCCHHHHhHHhcCCcc-------HHHHHH
Confidence            4579999999999999999998765432211000    01234555544432      124566432       222211


Q ss_pred             H---HHHhhcc-------CCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecC-----CCee--------e--cCCC
Q psy4730        1425 T---FREMAVS-------TTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLIN-----GEII--------K--MSNT 1477 (1513)
Q Consensus      1425 ~---lR~~~~~-------~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~n-----Ge~i--------~--~~~~ 1477 (1513)
                      +   ++.....       ......-+++|  +.+|+.-.+.|-.+|++.+.+...+     ++.+        .  .+.+
T Consensus       244 a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~  323 (615)
T TIGR02903       244 ARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPAD  323 (615)
T ss_pred             HHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccce
Confidence            1   1111000       01122468899  6678888999999998765443321     1111        1  1223


Q ss_pred             CeEEEee-cCCCCCCcchhhccEEEEeeC
Q psy4730        1478 MNLIFEC-ENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1478 ~~~iFE~-~~l~~asPatvsRcg~v~~~~ 1505 (1513)
                      +.++.-| .+.....|+..|||..+++.|
T Consensus       324 ~VLI~aTt~~~~~l~~aLrSR~~~i~~~p  352 (615)
T TIGR02903       324 FVLIGATTRDPEEINPALRSRCAEVFFEP  352 (615)
T ss_pred             EEEEEeccccccccCHHHHhceeEEEeCC
Confidence            4444444 457778899999999999887

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.44  E-value=0.007  Score=76.85  Aligned_cols=138  Identities=18%  Similarity=0.162  Sum_probs=76.1

Q ss_pred             HHhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHH
Q psy4730        1348 ILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTF 1426 (1513)
Q Consensus      1348 ~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~l 1426 (1513)
                      -...|+.++.||+|+||||+.+.++++++--... ..++..|..  +..+....  .-+++. +|..+   +.|+  ..+
T Consensus        35 ~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~--C~~i~~~~--~~d~~e-i~~~~---~~~v--d~i  104 (527)
T PRK14969         35 QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA--CLEIDSGR--FVDLIE-VDAAS---NTQV--DAM  104 (527)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH--HHHHhcCC--CCceeE-eeccc---cCCH--HHH
Confidence            3446899999999999999999999998631111 011111100  00000000  001111 12111   1221  233


Q ss_pred             HHh----hccC-CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEE
Q psy4730        1427 REM----AVST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMI 1501 (1513)
Q Consensus      1427 R~~----~~~~-~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v 1501 (1513)
                      |+.    ...+ ...++-+|+|. +|-.--+..|.+|.   .  |-+     .|+++.|||-|+|....-|...|||-.+
T Consensus       105 r~l~~~~~~~p~~~~~kVvIIDE-ad~ls~~a~naLLK---~--LEe-----pp~~~~fIL~t~d~~kil~tI~SRc~~~  173 (527)
T PRK14969        105 RELLDNAQYAPTRGRFKVYIIDE-VHMLSKSAFNAMLK---T--LEE-----PPEHVKFILATTDPQKIPVTVLSRCLQF  173 (527)
T ss_pred             HHHHHHHhhCcccCCceEEEEcC-cccCCHHHHHHHHH---H--HhC-----CCCCEEEEEEeCChhhCchhHHHHHHHH
Confidence            432    2222 24567889996 33333355666551   1  101     3678999999999988888789999998


Q ss_pred             EeeCC
Q psy4730        1502 YFELK 1506 (1513)
Q Consensus      1502 ~~~~~ 1506 (1513)
                      .|.+-
T Consensus       174 ~f~~l  178 (527)
T PRK14969        174 NLKQM  178 (527)
T ss_pred             hcCCC
Confidence            87653

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=96.43  E-value=0.0069  Score=78.07  Aligned_cols=132  Identities=17%  Similarity=0.224  Sum_probs=74.6

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhh--cccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK--SATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFR 1427 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~--~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR 1427 (1513)
                      ..|+.++.||+|+||||+.+.+|+++.-.....  .++..|..+  ...+|   +.-+    ++..+   ..|+  .-+|
T Consensus        39 l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~--~~~~~---Dvie----idaas---n~~v--d~IR  104 (725)
T PRK07133         39 ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN--VNNSL---DIIE----MDAAS---NNGV--DEIR  104 (725)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh--hcCCC---cEEE----Eeccc---cCCH--HHHH
Confidence            468999999999999999999999986322110  011111110  00011   1000    11111   1122  2233


Q ss_pred             Hh----hccC-CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEE
Q psy4730        1428 EM----AVST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIY 1502 (1513)
Q Consensus      1428 ~~----~~~~-~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~ 1502 (1513)
                      +.    ...+ ...++-+|+|. +|-.=.++.|.+|..     |-     ..|+++.+||-+++.....|+..|||..+.
T Consensus       105 eLie~~~~~P~~g~~KV~IIDE-a~~LT~~A~NALLKt-----LE-----EPP~~tifILaTte~~KLl~TI~SRcq~ie  173 (725)
T PRK07133        105 ELIENVKNLPTQSKYKIYIIDE-VHMLSKSAFNALLKT-----LE-----EPPKHVIFILATTEVHKIPLTILSRVQRFN  173 (725)
T ss_pred             HHHHHHHhchhcCCCEEEEEEC-hhhCCHHHHHHHHHH-----hh-----cCCCceEEEEEcCChhhhhHHHHhhceeEE
Confidence            32    2222 35678899996 222222455555421     10     127788999999999888888899999998


Q ss_pred             eeCC
Q psy4730        1503 FELK 1506 (1513)
Q Consensus      1503 ~~~~ 1506 (1513)
                      |.+-
T Consensus       174 F~~L  177 (725)
T PRK07133        174 FRRI  177 (725)
T ss_pred             ccCC
Confidence            8663

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=96.42  E-value=0.012  Score=71.05  Aligned_cols=145  Identities=15%  Similarity=0.142  Sum_probs=85.0

Q ss_pred             HHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcc-----------ccc---------ccceeEEEecCCC
Q psy4730        1341 IIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSA-----------TMK---------EFKTGYKIINPKS 1400 (1513)
Q Consensus      1341 ~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~-----------~~~---------~~~~~~~~inp~~ 1400 (1513)
                      +.+.+..-+..|+.++.||+|+||+|+...+++++.--......           +..         ..+.+++.|.|..
T Consensus        31 L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~  110 (365)
T PRK07471         31 LLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSW  110 (365)
T ss_pred             HHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEeccc
Confidence            33444444557899999999999999999999998521110000           000         1223345555432


Q ss_pred             CChhhccccccCCCCCCccCHHHHHHHHhhc----c-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecC
Q psy4730        1401 ITMGQLYGEFDSASHEWRDGILAKTFREMAV----S-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMS 1475 (1513)
Q Consensus      1401 ~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~----~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~ 1475 (1513)
                                +..+...+..+-..-+|+...    . .....+-+|+|. +|..=.++.|.+|   |.|-       ..|
T Consensus       111 ----------~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDe-ad~m~~~aanaLL---K~LE-------epp  169 (365)
T PRK07471        111 ----------NEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDT-ADEMNANAANALL---KVLE-------EPP  169 (365)
T ss_pred             ----------ccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEec-hHhcCHHHHHHHH---HHHh-------cCC
Confidence                      111112333444555676542    1 124567889996 2222235666665   1111       124


Q ss_pred             CCCeEEEeecCCCCCCcchhhccEEEEeeCC
Q psy4730        1476 NTMNLIFECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1476 ~~~~~iFE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
                      ++..+|+-+++....-|...|||-.|.|.+-
T Consensus       170 ~~~~~IL~t~~~~~llpti~SRc~~i~l~~l  200 (365)
T PRK07471        170 ARSLFLLVSHAPARLLPTIRSRCRKLRLRPL  200 (365)
T ss_pred             CCeEEEEEECCchhchHHhhccceEEECCCC
Confidence            5677788788887888888999999998763

>PRK09087 hypothetical protein; Validated

Probab=96.42  E-value=0.023  Score=64.32  Aligned_cols=44  Identities=16%  Similarity=0.222  Sum_probs=35.6

Q ss_pred             EEEEeecCC--CCCCChhhhccc---eEeecCCCChHHHHHHHHHHhhh
Q psy4730         935 IYITAMIPT--MNTITGRLLRHM---NIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       935 ~~~~a~~~~--~~~~~~r~~~~f---~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+++|..+|  .....|++.+|+   .++-+.+|+.+++..|+......
T Consensus       120 ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~  168 (226)
T PRK09087        120 LLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD  168 (226)
T ss_pred             EEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH
Confidence            455565555  455689999999   89999999999999999987654

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.41  E-value=0.0092  Score=66.13  Aligned_cols=87  Identities=14%  Similarity=0.116  Sum_probs=46.0

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEe-cCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKII-NPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~i-np~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
                      -|+++|||||||||+++.|...+..-..          ..+..+ +|.......-.+.+....-++....+..++|.+..
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~----------~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr   72 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKT----------HHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALR   72 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCC----------cEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhc
Confidence            4799999999999999998777653111          111111 22222111111111100112223345566665533


Q ss_pred             cCCCCceEEEEcCCCChHHHH
Q psy4730        1432 STTPDRKWIMFDGPIDAVWIE 1452 (1513)
Q Consensus      1432 ~~~~~~~WivfDG~~d~~wiE 1452 (1513)
                      .   ...+|++|.+-|++-++
T Consensus        73 ~---~pd~ii~gEird~e~~~   90 (198)
T cd01131          73 Q---DPDVILVGEMRDLETIR   90 (198)
T ss_pred             C---CcCEEEEcCCCCHHHHH
Confidence            2   35799999988876443

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=96.41  E-value=0.017  Score=68.36  Aligned_cols=143  Identities=19%  Similarity=0.232  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccc---------cccceeEEEe--cCCCCChhhcc
Q psy4730        1339 EKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATM---------KEFKTGYKII--NPKSITMGQLY 1407 (1513)
Q Consensus      1339 ~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~---------~~~~~~~~~i--np~~~t~~eL~ 1407 (1513)
                      ....+.++.-+..|+.++.||+|+||+++...+++++.-  .....+.         .+.+.+++.+  .|..-      
T Consensus        14 ~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC--~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~------   85 (319)
T PRK08769         14 DQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA--SGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRT------   85 (319)
T ss_pred             HHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC--CCCCCCCcchHHHHHhcCCCCCEEEEecCCCcc------
Confidence            334444444456789999999999999999999998852  2111110         1123445555  33210      


Q ss_pred             ccccCCCCCCccCHHHHHHHHhhc-----cCCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEE
Q psy4730        1408 GEFDSASHEWRDGILAKTFREMAV-----STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIF 1482 (1513)
Q Consensus      1408 G~~~~~t~eW~DG~l~~~lR~~~~-----~~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iF 1482 (1513)
                      |      ..=.-.+-...+|+...     ......+.+|+|. +|..=.++-|++|   |+|=       ..|+++.||+
T Consensus        86 ~------~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~-ae~m~~~AaNaLL---KtLE-------EPp~~~~fiL  148 (319)
T PRK08769         86 G------DKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDP-ADAINRAACNALL---KTLE-------EPSPGRYLWL  148 (319)
T ss_pred             c------ccccccccHHHHHHHHHHHhhCcccCCcEEEEecc-HhhhCHHHHHHHH---HHhh-------CCCCCCeEEE
Confidence            0      00011244566777653     2234678999994 4444456667776   2221       1367888999


Q ss_pred             eecCCCCCCcchhhccEEEEeeCC
Q psy4730        1483 ECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1483 E~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
                      -+++....-|.-.|||-.|.|.+-
T Consensus       149 ~~~~~~~lLpTIrSRCq~i~~~~~  172 (319)
T PRK08769        149 ISAQPARLPATIRSRCQRLEFKLP  172 (319)
T ss_pred             EECChhhCchHHHhhheEeeCCCc
Confidence            999999999999999999998753

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=96.40  E-value=0.0086  Score=67.66  Aligned_cols=28  Identities=21%  Similarity=0.277  Sum_probs=24.0

Q ss_pred             hcCCccceeccCCCccchHhHHHHHhcc
Q psy4730         726 LQNDVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       726 ~~~~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      ...+.+++|+||+|||||+++..+....
T Consensus        35 ~~~~~~lll~G~~G~GKT~la~~~~~~~   62 (226)
T TIGR03420        35 GKGDRFLYLWGESGSGKSHLLQAACAAA   62 (226)
T ss_pred             cCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4567799999999999999999887654

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=96.40  E-value=0.0067  Score=73.96  Aligned_cols=114  Identities=19%  Similarity=0.271  Sum_probs=65.4

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
                      ...|+|+||||||||++.+.||+.++              +.+..++...++...+.|. |      .+++++.+++...
T Consensus       116 ~~~iLL~GP~GsGKT~lAraLA~~l~--------------~pf~~~da~~L~~~gyvG~-d------~e~~L~~~~~~~~  174 (413)
T TIGR00382       116 KSNILLIGPTGSGKTLLAQTLARILN--------------VPFAIADATTLTEAGYVGE-D------VENILLKLLQAAD  174 (413)
T ss_pred             CceEEEECCCCcCHHHHHHHHHHhcC--------------CCeEEechhhccccccccc-c------HHHHHHHHHHhCc
Confidence            45899999999999999999997764              2344555555543334443 1      2567777776431


Q ss_pred             cc-CCCCceEEEEcCC--CCh--------------HHHHhhhcccCCCCceee-cCCCeeecCCCCeEEEeecCC
Q psy4730        1431 VS-TTPDRKWIMFDGP--IDA--------------VWIENMNTVLDDNKKLCL-INGEIIKMSNTMNLIFECENL 1487 (1513)
Q Consensus      1431 ~~-~~~~~~WivfDG~--~d~--------------~wiE~LNsvLDdn~~L~L-~nGe~i~~~~~~~~iFE~~~l 1487 (1513)
                      .+ .......++||+.  +.+              ...-.|..+|| .....+ +.|.+.. |..-.+++-|+|+
T Consensus       175 ~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLe-G~~~~v~~~~gr~~-~~~~~i~i~TsNi  247 (413)
T TIGR00382       175 YDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIE-GTVANVPPQGGRKH-PYQEFIQIDTSNI  247 (413)
T ss_pred             ccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhh-ccceecccCCCccc-cCCCeEEEEcCCc
Confidence            11 1123357888952  222              35667788885 333333 2343321 2233445555555

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=96.38  E-value=0.023  Score=67.75  Aligned_cols=118  Identities=19%  Similarity=0.230  Sum_probs=69.9

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
                      ++++|.||+|+|||++.+.+++.+..-.         ....+..+++..-             .+  ...+...+++.+.
T Consensus        39 ~~~ll~G~~G~GKt~~~~~l~~~l~~~~---------~~~~~i~~~~~~~-------------~~--~~~~~~~i~~~~~   94 (319)
T PRK00440         39 PHLLFAGPPGTGKTTAALALARELYGED---------WRENFLELNASDE-------------RG--IDVIRNKIKEFAR   94 (319)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHcCCc---------cccceEEeccccc-------------cc--hHHHHHHHHHHHh
Confidence            3689999999999999999988764210         0011222222110             00  0122233333332


Q ss_pred             cC---CCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeCC
Q psy4730        1432 ST---TPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1432 ~~---~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
                      ..   ....+.+++|.  .+.+...+.|...+++.             ++++.+||.+.+.....++..+||.++.|.+-
T Consensus        95 ~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~-------------~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l  161 (319)
T PRK00440         95 TAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMY-------------SQNTRFILSCNYSSKIIDPIQSRCAVFRFSPL  161 (319)
T ss_pred             cCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcC-------------CCCCeEEEEeCCccccchhHHHHhheeeeCCC
Confidence            21   13468999996  23344445555555432             34567888777777777888999999988763

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.0096  Score=75.71  Aligned_cols=45  Identities=20%  Similarity=0.155  Sum_probs=37.4

Q ss_pred             ceEEEEeecCCCCCCChhhhc--cceE-eecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLR--HMNI-ISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~--~f~~-~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ++..+||+|.|. .++|.++|  ||-. ++++.|+.+.-..||...+..
T Consensus       378 ~v~vi~aTN~p~-~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~  425 (494)
T COG0464         378 GVLVIAATNRPD-DLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD  425 (494)
T ss_pred             ceEEEecCCCcc-ccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence            467888888864 47888888  8876 999999999999999998763

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.36  E-value=0.028  Score=68.42  Aligned_cols=45  Identities=16%  Similarity=0.193  Sum_probs=34.5

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+.|+.+++.+ ..+.+++.+|+..+.+.+|+.+++..+...++..
T Consensus       149 ~~~fIl~t~~~-~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~  193 (363)
T PRK14961        149 HIKFILATTDV-EKIPKTILSRCLQFKLKIISEEKIFNFLKYILIK  193 (363)
T ss_pred             CeEEEEEcCCh-HhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHH
Confidence            34555555443 3588999999999999999999999888776643

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.36  E-value=0.015  Score=75.09  Aligned_cols=127  Identities=16%  Similarity=0.131  Sum_probs=73.4

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhh--hcccccc---------cceeEEEecCCCCChhhccccccCCCCCCc
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAK--KSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWR 1418 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~--~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~ 1418 (1513)
                      ..|.++++||+|+||||+.+.|++.+.-....  ...++.|         ....+..+++...                 
T Consensus        37 i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~-----------------   99 (585)
T PRK14950         37 VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASH-----------------   99 (585)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEecccc-----------------
Confidence            45788999999999999999999998632110  0111111         1122333333110                 


Q ss_pred             cCHHHHHHHHhh----cc-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcc
Q psy4730        1419 DGILAKTFREMA----VS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPA 1493 (1513)
Q Consensus      1419 DG~l~~~lR~~~----~~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPa 1493 (1513)
                        .-..-+|+..    .. .....+-||+|.. |-.=-+.+|.+|.-     |-+     .|+++.|||-++++....|+
T Consensus       100 --~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa-~~L~~~a~naLLk~-----LEe-----pp~~tv~Il~t~~~~kll~t  166 (585)
T PRK14950        100 --TSVDDAREIIERVQFRPALARYKVYIIDEV-HMLSTAAFNALLKT-----LEE-----PPPHAIFILATTEVHKVPAT  166 (585)
T ss_pred             --CCHHHHHHHHHHHhhCcccCCeEEEEEeCh-HhCCHHHHHHHHHH-----Hhc-----CCCCeEEEEEeCChhhhhHH
Confidence              0012233322    11 1245788999972 11112444444311     111     25678889999999999999


Q ss_pred             hhhccEEEEeeCC
Q psy4730        1494 TVSRVGMIYFELK 1506 (1513)
Q Consensus      1494 tvsRcg~v~~~~~ 1506 (1513)
                      -.|||-.+.|.+-
T Consensus       167 I~SR~~~i~f~~l  179 (585)
T PRK14950        167 ILSRCQRFDFHRH  179 (585)
T ss_pred             HHhccceeeCCCC
Confidence            9999999988653

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=96.35  E-value=0.0071  Score=68.07  Aligned_cols=44  Identities=9%  Similarity=0.214  Sum_probs=28.6

Q ss_pred             EEEeecCC--CCCCChhhhccce---EeecCCCChHHHHHHHHHHhhhh
Q psy4730         936 YITAMIPT--MNTITGRLLRHMN---IISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       936 ~~~a~~~~--~~~~~~r~~~~f~---~~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      ++++-.+|  -..+.||+.+||.   ++-+.+|+.++...|........
T Consensus       134 i~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~  182 (219)
T PF00308_consen  134 ILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKER  182 (219)
T ss_dssp             EEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHT
T ss_pred             EEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHh
Confidence            34454555  3468999999986   48899999999999999876653

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>CHL00206 ycf2 Ycf2; Provisional

Probab=96.34  E-value=0.0094  Score=81.93  Aligned_cols=37  Identities=24%  Similarity=0.125  Sum_probs=32.8

Q ss_pred             CCCCCCCCCCCCccchHHHHHHhcCEEEEEEcCCCCC
Q psy4730         662 GGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPT  698 (1513)
Q Consensus       662 g~~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~~~  698 (1513)
                      |..+.||+|||||-++|++|...|.|++.+++++-++
T Consensus      1632 GILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206       1632 GILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred             ceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence            4456899999999999999999999999999987654

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=96.34  E-value=0.015  Score=69.57  Aligned_cols=141  Identities=17%  Similarity=0.164  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccc---------cceeEEEecCCCCChhhc
Q psy4730        1337 YIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKE---------FKTGYKIINPKSITMGQL 1406 (1513)
Q Consensus      1337 ~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~---------~~~~~~~inp~~~t~~eL 1406 (1513)
                      .+....+....-+..|+.++.||+|+||+++.+.+++++.--... ..++..|         ...+++.+.|..      
T Consensus        14 ~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~------   87 (329)
T PRK08058         14 VVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDG------   87 (329)
T ss_pred             HHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecccc------
Confidence            333444444444567899999999999999999999987532111 1111111         112233333321      


Q ss_pred             cccccCCCCCCccCHHHHHHHHhhc----c-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEE
Q psy4730        1407 YGEFDSASHEWRDGILAKTFREMAV----S-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLI 1481 (1513)
Q Consensus      1407 ~G~~~~~t~eW~DG~l~~~lR~~~~----~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~i 1481 (1513)
                              ..  .+  ..-+|+...    . ....++.+|+|+ +|..=.++-|++|.     +|-+     .|+++.+|
T Consensus        88 --------~~--i~--id~ir~l~~~~~~~~~~~~~kvviI~~-a~~~~~~a~NaLLK-----~LEE-----Pp~~~~~I  144 (329)
T PRK08058         88 --------QS--IK--KDQIRYLKEEFSKSGVESNKKVYIIEH-ADKMTASAANSLLK-----FLEE-----PSGGTTAI  144 (329)
T ss_pred             --------cc--CC--HHHHHHHHHHHhhCCcccCceEEEeeh-HhhhCHHHHHHHHH-----HhcC-----CCCCceEE
Confidence                    10  11  234454432    1 234678999997 22222334444541     1111     57888999


Q ss_pred             EeecCCCCCCcchhhccEEEEeeCC
Q psy4730        1482 FECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1482 FE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
                      |-+++....-|+-.|||-.|.|.+-
T Consensus       145 l~t~~~~~ll~TIrSRc~~i~~~~~  169 (329)
T PRK08058        145 LLTENKHQILPTILSRCQVVEFRPL  169 (329)
T ss_pred             EEeCChHhCcHHHHhhceeeeCCCC
Confidence            9999999999999999999999764

>KOG0726|consensus

Probab=96.34  E-value=0.0071  Score=67.59  Aligned_cols=75  Identities=25%  Similarity=0.323  Sum_probs=46.3

Q ss_pred             HHHhhccCCCCCccCCCC---------ChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCCCCCChhhhccceE-
Q psy4730         888 EMILDDLNMPQKETYGAQ---------PAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNI-  957 (1513)
Q Consensus       888 ~~~~dd~n~p~~~~~~~q---------~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~-  957 (1513)
                      .+|+|++--.....|.+.         ..||||+|+   +||-.++        |+..|-|+|-- -+++|.|.|-=.+ 
T Consensus       281 IvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQl---dGFdsrg--------DvKvimATnri-e~LDPaLiRPGrID  348 (440)
T KOG0726|consen  281 IVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQL---DGFDSRG--------DVKVIMATNRI-ETLDPALIRPGRID  348 (440)
T ss_pred             eEEeehhhhhccccccCCCccHHHHHHHHHHHHHhc---cCccccC--------CeEEEEecccc-cccCHhhcCCCccc
Confidence            345577665544455443         458888886   5676665        45556665532 2456655543333 


Q ss_pred             --eecCCCChHHHHHHHHH
Q psy4730         958 --ISIDSFNEATLSKIFTS  974 (1513)
Q Consensus       958 --~~~~~~~~~~l~~i~~~  974 (1513)
                        +-++-|+.++-++||.-
T Consensus       349 rKIef~~pDe~TkkkIf~I  367 (440)
T KOG0726|consen  349 RKIEFPLPDEKTKKKIFQI  367 (440)
T ss_pred             cccccCCCchhhhceeEEE
Confidence              66788999998888864

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=96.33  E-value=0.013  Score=69.87  Aligned_cols=132  Identities=20%  Similarity=0.161  Sum_probs=82.8

Q ss_pred             HHhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccc---------cceeEEEecCCCCChhhccccccCCCCCC
Q psy4730        1348 ILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEW 1417 (1513)
Q Consensus      1348 ~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW 1417 (1513)
                      -+..|+.++.||+|+|||++.+.+|+++.-.... ..++..|         .+.+++.+.|..-                
T Consensus        19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~----------------   82 (328)
T PRK05707         19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA----------------   82 (328)
T ss_pred             CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC----------------
Confidence            4457899999999999999999999998632111 1122211         2334555555210                


Q ss_pred             ccCHHHHHHHHhh----cc-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCc
Q psy4730        1418 RDGILAKTFREMA----VS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASP 1492 (1513)
Q Consensus      1418 ~DG~l~~~lR~~~----~~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asP 1492 (1513)
                      ...+=..-+|+..    .. ....++.+|+|. +|.-=.++-|++|   |  +|   |.  .|+++.||+-|++....-|
T Consensus        83 ~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~-a~~m~~~aaNaLL---K--~L---EE--Pp~~~~fiL~t~~~~~ll~  151 (328)
T PRK05707         83 DKTIKVDQVRELVSFVVQTAQLGGRKVVLIEP-AEAMNRNAANALL---K--SL---EE--PSGDTVLLLISHQPSRLLP  151 (328)
T ss_pred             CCCCCHHHHHHHHHHHhhccccCCCeEEEECC-hhhCCHHHHHHHH---H--HH---hC--CCCCeEEEEEECChhhCcH
Confidence            0111134455543    22 234678888875 3333345666665   1  12   11  3678899999999999989


Q ss_pred             chhhccEEEEeeCC
Q psy4730        1493 ATVSRVGMIYFELK 1506 (1513)
Q Consensus      1493 atvsRcg~v~~~~~ 1506 (1513)
                      .-.|||-.+.|.+-
T Consensus       152 TI~SRc~~~~~~~~  165 (328)
T PRK05707        152 TIKSRCQQQACPLP  165 (328)
T ss_pred             HHHhhceeeeCCCc
Confidence            99999999999764

>TIGR01817 nifA Nif-specific regulatory protein

Probab=96.32  E-value=0.08  Score=68.01  Aligned_cols=64  Identities=16%  Similarity=0.102  Sum_probs=43.1

Q ss_pred             CccccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeeccccc
Q psy4730         705 PSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSAR  768 (1513)
Q Consensus       705 ~~~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~  768 (1513)
                      +.+++-......+....+..+-..+.|||+.|++||||+++++..-........-...++++..
T Consensus       195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~  258 (534)
T TIGR01817       195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAAL  258 (534)
T ss_pred             cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCC
Confidence            4445544455556666777778899999999999999999999886654322222234444443

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=96.32  E-value=0.029  Score=70.44  Aligned_cols=45  Identities=13%  Similarity=0.245  Sum_probs=35.9

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+.||.+++. .+.+++-+.+|...+.+.+++.+++..++..++..
T Consensus       158 ~~vfI~aTte-~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~  202 (507)
T PRK06645        158 HIIFIFATTE-VQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQ  202 (507)
T ss_pred             CEEEEEEeCC-hHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHH
Confidence            4556666543 34688999999999999999999999999988753

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.31  E-value=0.11  Score=66.59  Aligned_cols=45  Identities=13%  Similarity=0.152  Sum_probs=33.8

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+.||.+++.+++ +++-+++|...+.+..++.+++......++..
T Consensus       154 ~~~fIL~Ttd~~k-il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~  198 (618)
T PRK14951        154 YLKFVLATTDPQK-VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAA  198 (618)
T ss_pred             CeEEEEEECCchh-hhHHHHHhceeeecCCCCHHHHHHHHHHHHHH
Confidence            3455656554443 55669999999999999999998888877643

>PRK13342 recombination factor protein RarA; Reviewed

Probab=96.31  E-value=0.014  Score=72.31  Aligned_cols=109  Identities=17%  Similarity=0.222  Sum_probs=62.0

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
                      +.++|.||||+||||+.+.+++.++              ..+..+++...+.++                +..++.....
T Consensus        37 ~~ilL~GppGtGKTtLA~~ia~~~~--------------~~~~~l~a~~~~~~~----------------ir~ii~~~~~   86 (413)
T PRK13342         37 SSMILWGPPGTGKTTLARIIAGATD--------------APFEALSAVTSGVKD----------------LREVIEEARQ   86 (413)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC--------------CCEEEEecccccHHH----------------HHHHHHHHHH
Confidence            4799999999999999999987653              234455543221111                1122222211


Q ss_pred             c-CCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEee-cCC-CCCCcchhhccEEEEeeC
Q psy4730        1432 S-TTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC-ENL-EFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1432 ~-~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~-~~l-~~asPatvsRcg~v~~~~ 1505 (1513)
                      . ......-+++|.  .+.....+.|-..++++..               .++..| .+. ....|+..|||.++.+.+
T Consensus        87 ~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~i---------------ilI~att~n~~~~l~~aL~SR~~~~~~~~  150 (413)
T PRK13342         87 RRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTI---------------TLIGATTENPSFEVNPALLSRAQVFELKP  150 (413)
T ss_pred             hhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcE---------------EEEEeCCCChhhhccHHHhccceeeEeCC
Confidence            1 123457888885  2344445555555544321               122222 222 246799999999888765

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.31  E-value=0.014  Score=75.22  Aligned_cols=127  Identities=19%  Similarity=0.215  Sum_probs=73.9

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHHHhHhhhh---cccccc---------cceeEEEecCCCCChhhccccccCCCCC
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK---SATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHE 1416 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~---~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~e 1416 (1513)
                      ...|++++.||+|+||||+.+.+|+.+.-.....   .++..|         ....++.+++                 .
T Consensus        36 rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~-----------------~   98 (620)
T PRK14948         36 RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDA-----------------A   98 (620)
T ss_pred             CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEec-----------------c
Confidence            3458999999999999999999999986422110   011110         0111122221                 1


Q ss_pred             CccCHHHHHHHHhhc----cC-CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCC
Q psy4730        1417 WRDGILAKTFREMAV----ST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFAS 1491 (1513)
Q Consensus      1417 W~DG~l~~~lR~~~~----~~-~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~as 1491 (1513)
                      ...|  ..-+|+...    .+ ....+-||+|. +|..=-+..|++|.   .  |   |  ..|+++.||+-+.|....-
T Consensus        99 ~~~~--vd~IReii~~a~~~p~~~~~KViIIDE-ad~Lt~~a~naLLK---~--L---E--ePp~~tvfIL~t~~~~~ll  165 (620)
T PRK14948         99 SNTG--VDNIRELIERAQFAPVQARWKVYVIDE-CHMLSTAAFNALLK---T--L---E--EPPPRVVFVLATTDPQRVL  165 (620)
T ss_pred             ccCC--HHHHHHHHHHHhhChhcCCceEEEEEC-ccccCHHHHHHHHH---H--H---h--cCCcCeEEEEEeCChhhhh
Confidence            2233  244455432    11 24567888996 22111234444431   0  1   0  2456788888888888888


Q ss_pred             cchhhccEEEEeeC
Q psy4730        1492 PATVSRVGMIYFEL 1505 (1513)
Q Consensus      1492 PatvsRcg~v~~~~ 1505 (1513)
                      |+-.|||.++.|.+
T Consensus       166 pTIrSRc~~~~f~~  179 (620)
T PRK14948        166 PTIISRCQRFDFRR  179 (620)
T ss_pred             HHHHhheeEEEecC
Confidence            99999999998763

>TIGR00368 Mg chelatase-related protein

Probab=96.30  E-value=0.0091  Score=74.93  Aligned_cols=75  Identities=17%  Similarity=0.321  Sum_probs=55.6

Q ss_pred             HHHhhccCCCCCccCCCCChHHHHHHHHhcCCcc-ccCCceeeeecceEEEEeecCC----------------------C
Q psy4730         888 EMILDDLNMPQKETYGAQPAVELLRQIIDHKHLY-DFQTVTRVDLVDIIYITAMIPT----------------------M  944 (1513)
Q Consensus       888 ~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~y-d~~~~~~~~~~~~~~~~a~~~~----------------------~  944 (1513)
                      .+|+||++.-.      ...++.||+.++.|.+. .+.......-.+++++|||||-                      .
T Consensus       298 vLfLDEi~e~~------~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~  371 (499)
T TIGR00368       298 VLFLDELPEFK------RSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYW  371 (499)
T ss_pred             eEecCChhhCC------HHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHh
Confidence            36789997433      24799999999988763 4545555566799999999983                      1


Q ss_pred             CCCChhhhccceE-eecCCCChHHH
Q psy4730         945 NTITGRLLRHMNI-ISIDSFNEATL  968 (1513)
Q Consensus       945 ~~~~~r~~~~f~~-~~~~~~~~~~l  968 (1513)
                      +.+++.|+.||.+ +.+++++.+.+
T Consensus       372 ~~is~pllDR~dl~~~~~~~~~~~l  396 (499)
T TIGR00368       372 NKLSGPFLDRIDLSVEVPLLPPEKL  396 (499)
T ss_pred             hhccHhHHhhCCEEEEEcCCCHHHH
Confidence            2589999999999 56777776643

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=96.30  E-value=0.049  Score=68.86  Aligned_cols=229  Identities=17%  Similarity=0.176  Sum_probs=123.4

Q ss_pred             cccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeeccccccChhHHHHHHHHHhhhhc
Q psy4730         707 DLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRR  786 (1513)
Q Consensus       707 ~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t~~~~~q~~i~~~~~~~~  786 (1513)
                      +++-.+....+....+..+...+.||++.|++||||+++...+-........-...++++...     ++.+++.+....
T Consensus       139 ~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~-----~~~~~~~lfg~~  213 (469)
T PRK10923        139 DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIP-----KDLIESELFGHE  213 (469)
T ss_pred             cceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCC-----HHHHHHHhcCCC
Confidence            344455555666667777788999999999999999998887766543222222344554432     234445554444


Q ss_pred             cCCCCCCCCceE-EEEecccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCcCCCCCChhHHHHHHH
Q psy4730         787 KGVYGPAMGKKY-IVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIK  865 (1513)
Q Consensus       787 ~~~~~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  865 (1513)
                      ++.|......+. .+..+                                      ..+                     
T Consensus       214 ~g~~~~~~~~~~g~~~~a--------------------------------------~~G---------------------  234 (469)
T PRK10923        214 KGAFTGANTIRQGRFEQA--------------------------------------DGG---------------------  234 (469)
T ss_pred             CCCCCCCCcCCCCCeeEC--------------------------------------CCC---------------------
Confidence            444322111100 00000                                      000                     


Q ss_pred             HHHhhhcccchhHHHHHHHHHHHHHhhccC-CCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC-
Q psy4730         866 INLAKRNAQATDWYIEKIIQVYEMILDDLN-MPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT-  943 (1513)
Q Consensus       866 ~~~~~~~~~~~~~~~~~~~~~~~~~~dd~n-~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~-  943 (1513)
                                            .+|+|++. ||.       ..-.-|.++++.|.+...+.... .-.|+.+++|++.+ 
T Consensus       235 ----------------------tl~l~~i~~l~~-------~~q~~L~~~l~~~~~~~~~~~~~-~~~~~rii~~~~~~l  284 (469)
T PRK10923        235 ----------------------TLFLDEIGDMPL-------DVQTRLLRVLADGQFYRVGGYAP-VKVDVRIIAATHQNL  284 (469)
T ss_pred             ----------------------EEEEeccccCCH-------HHHHHHHHHHhcCcEEeCCCCCe-EEeeEEEEEeCCCCH
Confidence                                  12346664 443       23345556666666655443332 23589999999876 


Q ss_pred             -----CCCCChhhhccceEeecCCCC--h--HHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q psy4730         944 -----MNTITGRLLRHMNIISIDSFN--E--ATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIP 1014 (1513)
Q Consensus       944 -----~~~~~~r~~~~f~~~~~~~~~--~--~~l~~i~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1014 (1513)
                           ...+.+.|+.+++.+.+.=|.  .  +++..+...++..+- ..+...+..++    ..+++..           
T Consensus       285 ~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~-~~~~~~~~~~~----~~a~~~L-----------  348 (469)
T PRK10923        285 EQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAA-RELGVEAKLLH----PETEAAL-----------  348 (469)
T ss_pred             HHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHH-HHcCCCCCCcC----HHHHHHH-----------
Confidence                 457889999999776655554  2  366666666654421 11111110010    1111111           


Q ss_pred             CCCccccchhhHHHHHhhhcccCCcccCChh
Q psy4730        1015 SKSHYVFNLRDFAKVIMGLTQLPASHCKAPD 1045 (1513)
Q Consensus      1015 ~~~hy~fnlrd~~~~~~g~~~~~~~~~~~~~ 1045 (1513)
                      ...||-=|+|.|.++++-..........+..
T Consensus       349 ~~~~wpgNv~eL~~~i~~~~~~~~~~~i~~~  379 (469)
T PRK10923        349 TRLAWPGNVRQLENTCRWLTVMAAGQEVLIQ  379 (469)
T ss_pred             HhCCCCChHHHHHHHHHHHHHhCCCCcccHH
Confidence            2456666999999999877654433333333

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=96.30  E-value=0.055  Score=65.49  Aligned_cols=189  Identities=21%  Similarity=0.297  Sum_probs=108.8

Q ss_pred             hhHHHHHHHHhcCCcc--ceeccCCCccchHhHHHHHhccCcC--cccceeeccccccChhHHHHHHHHHhhhhccCCCC
Q psy4730         716 CMQNFFINLYLQNDVP--MMFVGPTGTGKSTIVLNLLLNLSKD--KYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYG  791 (1513)
Q Consensus       716 ~~~~~~~~~~~~~~~~--~ll~G~~g~GKt~~v~~~~~~~~~~--~~~~~~~~fs~~t~~~~~q~~i~~~~~~~~~~~~~  791 (1513)
                      .....++...+..+.|  +++.|+||||||++++...+.+...  .....++|+-...++-++-..|-.++-       .
T Consensus        27 ~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~-------~   99 (366)
T COG1474          27 NQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG-------K   99 (366)
T ss_pred             HHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC-------C
Confidence            3444556666666664  6899999999999999998876533  222466777665555544444433321       0


Q ss_pred             CCCCceEEEEecccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCcCCCCCChhHHHHHHHHHHhhh
Q psy4730         792 PAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKR  871 (1513)
Q Consensus       792 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  871 (1513)
                      +|...                                                          ....+....+.....+.
T Consensus       100 ~p~~g----------------------------------------------------------~~~~~~~~~l~~~~~~~  121 (366)
T COG1474         100 VPLTG----------------------------------------------------------DSSLEILKRLYDNLSKK  121 (366)
T ss_pred             CCCCC----------------------------------------------------------CchHHHHHHHHHHHHhc
Confidence            11100                                                          00112222222222220


Q ss_pred             cccchhHHHHHHHHHHHHHhhccC-CCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC--CCCCC
Q psy4730         872 NAQATDWYIEKIIQVYEMILDDLN-MPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT--MNTIT  948 (1513)
Q Consensus       872 ~~~~~~~~~~~~~~~~~~~~dd~n-~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~--~~~~~  948 (1513)
                          ++        +..+.+||++ |...+.       +.|-+++...+-.         -+.+.+++..|..  ...++
T Consensus       122 ----~~--------~~IvvLDEid~L~~~~~-------~~LY~L~r~~~~~---------~~~v~vi~i~n~~~~~~~ld  173 (366)
T COG1474         122 ----GK--------TVIVILDEVDALVDKDG-------EVLYSLLRAPGEN---------KVKVSIIAVSNDDKFLDYLD  173 (366)
T ss_pred             ----CC--------eEEEEEcchhhhccccc-------hHHHHHHhhcccc---------ceeEEEEEEeccHHHHHHhh
Confidence                01        1145679998 444442       4444444432211         2345556555554  56799


Q ss_pred             hhhhccceE--eecCCCChHHHHHHHHHHhhhhhhc-cchhHHHHHHHHHHH
Q psy4730         949 GRLLRHMNI--ISIDSFNEATLSKIFTSVLDWHFSK-GFADSIVKLSKNIVA  997 (1513)
Q Consensus       949 ~r~~~~f~~--~~~~~~~~~~l~~i~~~~l~~~~~~-~f~~~~~~~~~~~~~  997 (1513)
                      ||+.++|..  +..++.+.++|..|...-...-|.. .+.+++..++..+++
T Consensus       174 ~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a  225 (366)
T COG1474         174 PRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVA  225 (366)
T ss_pred             hhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHH
Confidence            999988877  5688889999999999988876655 455566666554443

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=96.24  E-value=0.044  Score=65.37  Aligned_cols=44  Identities=5%  Similarity=0.135  Sum_probs=33.3

Q ss_pred             eEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         934 IIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       934 ~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ..++.+++.+ ..+.+.+.+|+..+.+.+|+.+++..+...++..
T Consensus       133 ~~lIl~~~~~-~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~  176 (319)
T PRK00440        133 TRFILSCNYS-SKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAEN  176 (319)
T ss_pred             CeEEEEeCCc-cccchhHHHHhheeeeCCCCHHHHHHHHHHHHHH
Confidence            3455555543 4566779999999999999999998888887653

>KOG2028|consensus

Probab=96.23  E-value=0.026  Score=65.17  Aligned_cols=43  Identities=16%  Similarity=0.255  Sum_probs=36.0

Q ss_pred             ceEEEEeecC-CCCCCChhhhccceEeecCCCChHHHHHHHHHH
Q psy4730         933 DIIYITAMIP-TMNTITGRLLRHMNIISIDSFNEATLSKIFTSV  975 (1513)
Q Consensus       933 ~~~~~~a~~~-~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~  975 (1513)
                      +|.+|+|+.- |--.+...|++|..++.+.....+.+..|...-
T Consensus       250 ~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ra  293 (554)
T KOG2028|consen  250 DITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRA  293 (554)
T ss_pred             ceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHH
Confidence            7889977754 466788899999999999999999988887763

>PRK08118 topology modulation protein; Reviewed

Probab=96.20  E-value=0.0037  Score=67.28  Aligned_cols=24  Identities=25%  Similarity=0.490  Sum_probs=21.7

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|+|+||+||||||+.+.|++.++
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~   26 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLN   26 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999987765

>PRK13808 adenylate kinase; Provisional

Probab=96.15  E-value=0.0077  Score=71.11  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=21.4

Q ss_pred             EEEeccCCCCchHHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      |+|+|||||||||..+.|++.++
T Consensus         3 Iiv~GpPGSGK~T~a~~LA~~yg   25 (333)
T PRK13808          3 LILLGPPGAGKGTQAQRLVQQYG   25 (333)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            89999999999999999998775

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=96.13  E-value=0.019  Score=68.06  Aligned_cols=158  Identities=17%  Similarity=0.161  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhc---cc-ccccceeEEEecCCCCChhhcc----
Q psy4730        1336 WYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKS---AT-MKEFKTGYKIINPKSITMGQLY---- 1407 (1513)
Q Consensus      1336 ~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~---~~-~~~~~~~~~~inp~~~t~~eL~---- 1407 (1513)
                      ..+....+....-+..|+.++.||.|+||+++...+++++.--..-+.   .. ....+.+++.+.|......+..    
T Consensus        11 ~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~   90 (314)
T PRK07399         11 LAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASE   90 (314)
T ss_pred             HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhh
Confidence            333444444444445689999999999999999999998753110000   00 0112334556666432211111    


Q ss_pred             -ccccCCCCCCccCHHHHHHHHhh----cc-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEE
Q psy4730        1408 -GEFDSASHEWRDGILAKTFREMA----VS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLI 1481 (1513)
Q Consensus      1408 -G~~~~~t~eW~DG~l~~~lR~~~----~~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~i 1481 (1513)
                       +..+. ......-+-..-+|+..    .. ....++-+|+|+. |..=.++-|++|.     +|      .=||+..||
T Consensus        91 ~~~~~~-~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~a-e~m~~~aaNaLLK-----~L------EEPp~~~fI  157 (314)
T PRK07399         91 AEEAGL-KRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDA-ETMNEAAANALLK-----TL------EEPGNGTLI  157 (314)
T ss_pred             hhhccc-cccccccCcHHHHHHHHHHHccCcccCCceEEEEEch-hhcCHHHHHHHHH-----HH------hCCCCCeEE
Confidence             10000 00011112223345442    12 2357899999982 1111122333431     11      115577889


Q ss_pred             EeecCCCCCCcchhhccEEEEeeCC
Q psy4730        1482 FECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1482 FE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
                      +-+++....-|+-.|||-.|.|.+-
T Consensus       158 Li~~~~~~Ll~TI~SRcq~i~f~~l  182 (314)
T PRK07399        158 LIAPSPESLLPTIVSRCQIIPFYRL  182 (314)
T ss_pred             EEECChHhCcHHHHhhceEEecCCC
Confidence            9899999999999999999999763

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=96.13  E-value=0.051  Score=59.63  Aligned_cols=42  Identities=7%  Similarity=0.205  Sum_probs=32.9

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHH
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSV  975 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~  975 (1513)
                      +..++.+++.+ ..+.+.+.+|..++.+.+|+.+++..+....
T Consensus       126 ~~~~il~~~~~-~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~  167 (188)
T TIGR00678       126 NTLFILITPSP-EKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ  167 (188)
T ss_pred             CeEEEEEECCh-HhChHHHHhhcEEeeCCCCCHHHHHHHHHHc
Confidence            34555555544 5788999999999999999999987777664

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=96.12  E-value=0.017  Score=77.73  Aligned_cols=83  Identities=18%  Similarity=0.293  Sum_probs=59.9

Q ss_pred             HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCC------------------------
Q psy4730         889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTM------------------------  944 (1513)
Q Consensus       889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~------------------------  944 (1513)
                      +++||+-...++      +...|.|++|.|-+-|... ..+...+..+|.+.|-..                        
T Consensus       615 vllDeieka~~~------v~~~Llq~le~g~~~d~~g-~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~  687 (821)
T CHL00095        615 VLFDEIEKAHPD------IFNLLLQILDDGRLTDSKG-RTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQY  687 (821)
T ss_pred             EEECChhhCCHH------HHHHHHHHhccCceecCCC-cEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccH
Confidence            456888755543      7899999999988776543 345556788887766430                        


Q ss_pred             ------------CCCChhhhccc-eEeecCCCChHHHHHHHHHHhhh
Q psy4730         945 ------------NTITGRLLRHM-NIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       945 ------------~~~~~r~~~~f-~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                                  ....|.|++|+ .++...+.+.+++.+|....+..
T Consensus       688 ~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~  734 (821)
T CHL00095        688 KRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKN  734 (821)
T ss_pred             HHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence                        11456788898 78889999999999988876654

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.12  E-value=0.014  Score=71.86  Aligned_cols=127  Identities=18%  Similarity=0.168  Sum_probs=71.5

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHHHhHhhh---------hcccccc---------cceeEEEecCCCCChhhccccc
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK---------KSATMKE---------FKTGYKIINPKSITMGQLYGEF 1410 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~---------~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~ 1410 (1513)
                      ...|++++.||+|+||||+.+.+|+++.--...         ..++..|         ...++..+++...         
T Consensus        36 ~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~---------  106 (397)
T PRK14955         36 RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASN---------  106 (397)
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeeccccc---------
Confidence            346899999999999999999999998631100         0011111         0111222221100         


Q ss_pred             cCCCCCCccCHHHHHHHHhh----ccC-CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeec
Q psy4730        1411 DSASHEWRDGILAKTFREMA----VST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE 1485 (1513)
Q Consensus      1411 ~~~t~eW~DG~l~~~lR~~~----~~~-~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~ 1485 (1513)
                              .|  ..-+|+..    ..+ ...++-+|+|. +|-.--++.|.+|.   .  |-     ..|+.+.+||-++
T Consensus       107 --------~~--id~Ir~l~~~~~~~p~~~~~kvvIIde-a~~l~~~~~~~LLk---~--LE-----ep~~~t~~Il~t~  165 (397)
T PRK14955        107 --------NS--VDDIRLLRENVRYGPQKGRYRVYIIDE-VHMLSIAAFNAFLK---T--LE-----EPPPHAIFIFATT  165 (397)
T ss_pred             --------CC--HHHHHHHHHHHhhchhcCCeEEEEEeC-hhhCCHHHHHHHHH---H--Hh-----cCCCCeEEEEEeC
Confidence                    11  12233322    111 24567888886 11111133343331   0  10     2467888899888


Q ss_pred             CCCCCCcchhhccEEEEeeC
Q psy4730        1486 NLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1486 ~l~~asPatvsRcg~v~~~~ 1505 (1513)
                      +.....|+..|||.++.|.+
T Consensus       166 ~~~kl~~tl~sR~~~v~f~~  185 (397)
T PRK14955        166 ELHKIPATIASRCQRFNFKR  185 (397)
T ss_pred             ChHHhHHHHHHHHHHhhcCC
Confidence            88889898999999988765

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=96.11  E-value=0.015  Score=70.63  Aligned_cols=125  Identities=15%  Similarity=0.166  Sum_probs=71.2

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccc---------cceeEEEecCCCCChhhccccccCCCCCCccC
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWRDG 1420 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG 1420 (1513)
                      .|+.+++||+|+|||++.+.+++++.--... ..++..|         ....+..+++..                 ..+
T Consensus        36 ~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~-----------------~~~   98 (355)
T TIGR02397        36 AHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAAS-----------------NNG   98 (355)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccc-----------------cCC
Confidence            4789999999999999999999998632110 0001000         011223333321                 011


Q ss_pred             --HHHHHHHHhhccC-CCCceEEEEcCC--CChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchh
Q psy4730        1421 --ILAKTFREMAVST-TPDRKWIMFDGP--IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATV 1495 (1513)
Q Consensus      1421 --~l~~~lR~~~~~~-~~~~~WivfDG~--~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatv 1495 (1513)
                        -+-.++......+ ...++.+|+|..  +..   +..|.+|.     ++.+     .|+++.+||-+.++....|+..
T Consensus        99 ~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~---~~~~~Ll~-----~le~-----~~~~~~lIl~~~~~~~l~~~l~  165 (355)
T TIGR02397        99 VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK---SAFNALLK-----TLEE-----PPEHVVFILATTEPHKIPATIL  165 (355)
T ss_pred             HHHHHHHHHHHhcCcccCCceEEEEeChhhcCH---HHHHHHHH-----HHhC-----CccceeEEEEeCCHHHHHHHHH
Confidence              1122333322222 246688999962  222   23344332     0111     3567888999999888888999


Q ss_pred             hccEEEEeeC
Q psy4730        1496 SRVGMIYFEL 1505 (1513)
Q Consensus      1496 sRcg~v~~~~ 1505 (1513)
                      |||-.+.+.+
T Consensus       166 sr~~~~~~~~  175 (355)
T TIGR02397       166 SRCQRFDFKR  175 (355)
T ss_pred             hheeEEEcCC
Confidence            9999888764

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=96.10  E-value=0.0066  Score=78.12  Aligned_cols=125  Identities=18%  Similarity=0.201  Sum_probs=90.9

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCC----CC--CCccCHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSA----SH--EWRDGILAKT 1425 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~----t~--eW~DG~l~~~ 1425 (1513)
                      -||+|.|++|+|||++.+.|++.+..            ...+..+++ ..|...|+|.+|-.    ++  .|..|+|.++
T Consensus        17 g~vLl~G~~GtgKs~lar~l~~~~~~------------~~pfv~i~~-~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A   83 (589)
T TIGR02031        17 GGVAIRARAGTGKTALARALAEILPP------------IMPFVELPL-GVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA   83 (589)
T ss_pred             ceEEEEcCCCcHHHHHHHHHHHhCCc------------CCCeEecCc-ccchhhcccchhhhhhhhcCcccCCCCCeeeC
Confidence            38999999999999999999987653            123455655 57889999997622    12  3566665432


Q ss_pred             HHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCC----CCCcchhhccE
Q psy4730        1426 FREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE----FASPATVSRVG 1499 (1513)
Q Consensus      1426 lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~----~asPatvsRcg 1499 (1513)
                                ..--+++|  ..+++.-...|-.+|++...-.-..|.....|.++++|- ++|-.    ...|+...|.+
T Consensus        84 ----------~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIA-t~np~e~~g~L~~~LldRf~  152 (589)
T TIGR02031        84 ----------PRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIA-TYDPAEGGGGLPDHLLDRLA  152 (589)
T ss_pred             ----------CCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEE-ecCCccccCCCCHHHHHhcc
Confidence                      12356778  567888889999999876554445688899999988885 65553    57889999998


Q ss_pred             E
Q psy4730        1500 M 1500 (1513)
Q Consensus      1500 ~ 1500 (1513)
                      +
T Consensus       153 l  153 (589)
T TIGR02031       153 L  153 (589)
T ss_pred             C
Confidence            8

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=96.10  E-value=0.011  Score=77.13  Aligned_cols=139  Identities=21%  Similarity=0.218  Sum_probs=89.8

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcc---------c---ccc--------cceeEEEecCCCCChhhcccccc
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSA---------T---MKE--------FKTGYKIINPKSITMGQLYGEFD 1411 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~---------~---~~~--------~~~~~~~inp~~~t~~eL~G~~~ 1411 (1513)
                      .||+|.|++|+||||+.+.|++.+-.+......         +   ..|        .....++.-|...|...|+|..|
T Consensus        26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d  105 (633)
T TIGR02442        26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD  105 (633)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc
Confidence            689999999999999999999887321110000         0   000        00112233466678889999876


Q ss_pred             CC----CCC--CccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEe
Q psy4730        1412 SA----SHE--WRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFE 1483 (1513)
Q Consensus      1412 ~~----t~e--W~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE 1483 (1513)
                      ..    +++  ..-|+|..          ...--+++|  ..+++.-.+.|-.+|++...-.-..|.....|.++.++. 
T Consensus       106 ~~~~l~~g~~~~~~G~L~~----------A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIa-  174 (633)
T TIGR02442       106 IERALREGEKAFQPGLLAE----------AHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIG-  174 (633)
T ss_pred             HHHHhhcCCeeecCcceee----------cCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEE-
Confidence            32    111  23343321          123567888  457888888888888877655556788888888887777 


Q ss_pred             ecCCC--CCCcchhhccEEE
Q psy4730        1484 CENLE--FASPATVSRVGMI 1501 (1513)
Q Consensus      1484 ~~~l~--~asPatvsRcg~v 1501 (1513)
                      +.|..  ..+|+...|+++.
T Consensus       175 t~np~eg~l~~~L~dR~~l~  194 (633)
T TIGR02442       175 TMNPEEGDLRPQLLDRFGLC  194 (633)
T ss_pred             ecCCCCCCCCHHHHhhcceE
Confidence            55553  4678999999863

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>KOG0734|consensus

Probab=96.10  E-value=0.0093  Score=71.79  Aligned_cols=44  Identities=25%  Similarity=0.171  Sum_probs=32.7

Q ss_pred             ceEEEEeecCCC-----CCCChhhhccceEeecCCCChHHHHHHHHHHhhhh
Q psy4730         933 DIIYITAMIPTM-----NTITGRLLRHMNIISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       933 ~~~~~~a~~~~~-----~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      .|.++||+|-|.     -.=|.||=+|   +.++.|+...-..|+..++...
T Consensus       439 GiIvigATNfpe~LD~AL~RPGRFD~~---v~Vp~PDv~GR~eIL~~yl~ki  487 (752)
T KOG0734|consen  439 GIIVIGATNFPEALDKALTRPGRFDRH---VTVPLPDVRGRTEILKLYLSKI  487 (752)
T ss_pred             ceEEEeccCChhhhhHHhcCCCcccee---EecCCCCcccHHHHHHHHHhcC
Confidence            688999999762     1224455554   7899999999999998887654

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=96.09  E-value=0.022  Score=68.86  Aligned_cols=49  Identities=18%  Similarity=0.262  Sum_probs=34.6

Q ss_pred             HHhhccCCCCCccCCCCChHHHHHHHHhcCCcc-ccCCceeeeecceEEEEeecCC
Q psy4730         889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLY-DFQTVTRVDLVDIIYITAMIPT  943 (1513)
Q Consensus       889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~y-d~~~~~~~~~~~~~~~~a~~~~  943 (1513)
                      +|+||+-=-+.      .+||-|||=+|.|..- .+..-...+--++++++||||.
T Consensus       287 LFLDElpef~~------~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpc  336 (490)
T COG0606         287 LFLDELPEFKR------SILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPC  336 (490)
T ss_pred             EEeeccchhhH------HHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCC
Confidence            56677642221      5899999999998653 3434445555599999999994

>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite

Probab=96.09  E-value=0.006  Score=73.06  Aligned_cols=87  Identities=14%  Similarity=0.198  Sum_probs=53.7

Q ss_pred             HHHhhccCCCCCccCCCCChHHHHHHHHhcCCccccC-CceeeeecceEEEEeecCCC------------CCCChhhhcc
Q psy4730         888 EMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQ-TVTRVDLVDIIYITAMIPTM------------NTITGRLLRH  954 (1513)
Q Consensus       888 ~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~-~~~~~~~~~~~~~~a~~~~~------------~~~~~r~~~~  954 (1513)
                      .+++||++.-..+      -...|.+.+++|...-.+ .....---...++||+||..            -.+++.+++|
T Consensus       124 iccIDe~dk~~~~------~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSR  197 (331)
T PF00493_consen  124 ICCIDEFDKMKED------DRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSR  197 (331)
T ss_dssp             EEEECTTTT--CH------HHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC
T ss_pred             eeeecccccccch------HHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhh
Confidence            3667999966644      478899999998775433 34444444899999999961            2699999999


Q ss_pred             ceEee--cCCCChHHHHHHHHHHhhhhh
Q psy4730         955 MNIIS--IDSFNEATLSKIFTSVLDWHF  980 (1513)
Q Consensus       955 f~~~~--~~~~~~~~l~~i~~~~l~~~~  980 (1513)
                      |-+++  .|.|+.+.-..|-..++..+.
T Consensus       198 FDLif~l~D~~d~~~D~~la~~il~~~~  225 (331)
T PF00493_consen  198 FDLIFLLRDKPDEEEDERLAEHILDSHR  225 (331)
T ss_dssp             -SEEECC--TTT-HHHHHHHHHHHTTT-
T ss_pred             cCEEEEeccccccccccccceEEEeccc
Confidence            99976  478887777777777776654

; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.08  E-value=0.026  Score=70.93  Aligned_cols=138  Identities=23%  Similarity=0.249  Sum_probs=74.0

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhh-cccccccceeEEEecCCCCChhhccccccCCCCCCccCHH-HHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-SATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGIL-AKTFR 1427 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~-~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l-~~~lR 1427 (1513)
                      ..|+.++.||+|+||||+.+.+|++++-.+... .++..|.  .+..+.....  .+++ .+|..+   .-|+= .+.++
T Consensus        37 i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~--nc~~i~~g~~--~d~~-eidaas---~~gvd~ir~I~  108 (486)
T PRK14953         37 VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE--NCVEIDKGSF--PDLI-EIDAAS---NRGIDDIRALR  108 (486)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH--HHHHHhcCCC--CcEE-EEeCcc---CCCHHHHHHHH
Confidence            457889999999999999999999987322111 1111110  0000110000  0111 112111   11211 12223


Q ss_pred             Hhhc-c-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeC
Q psy4730        1428 EMAV-S-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1428 ~~~~-~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
                      +.+. . ....++-+|+|. +|....+..|.+|.-     |.+     .|+++.+||-++++....|+-.|||..+.|.+
T Consensus       109 ~~~~~~P~~~~~KVvIIDE-ad~Lt~~a~naLLk~-----LEe-----pp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~  177 (486)
T PRK14953        109 DAVSYTPIKGKYKVYIIDE-AHMLTKEAFNALLKT-----LEE-----PPPRTIFILCTTEYDKIPPTILSRCQRFIFSK  177 (486)
T ss_pred             HHHHhCcccCCeeEEEEEC-hhhcCHHHHHHHHHH-----Hhc-----CCCCeEEEEEECCHHHHHHHHHHhceEEEcCC
Confidence            2222 1 134678899996 232223445555421     111     36688889988888888777789999998865


Q ss_pred             C
Q psy4730        1506 K 1506 (1513)
Q Consensus      1506 ~ 1506 (1513)
                      -
T Consensus       178 l  178 (486)
T PRK14953        178 P  178 (486)
T ss_pred             C
Confidence            3

>PRK05917 DNA polymerase III subunit delta'; Validated

Probab=96.07  E-value=0.034  Score=64.55  Aligned_cols=139  Identities=16%  Similarity=0.184  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhccc---ccccceeEEEecCCCCChhhccccccCCCCC
Q psy4730        1340 KIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSAT---MKEFKTGYKIINPKSITMGQLYGEFDSASHE 1416 (1513)
Q Consensus      1340 k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~---~~~~~~~~~~inp~~~t~~eL~G~~~~~t~e 1416 (1513)
                      +..+..+.-+..|+.++.||.|+||+++...+|+.+.-.. ....+   ....+.+++.|.|..-+  ..          
T Consensus         8 ~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~-~~~~c~~~~~~~HPD~~~i~p~~~~--~~----------   74 (290)
T PRK05917          8 ALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKET-SPEAAYKISQKIHPDIHEFSPQGKG--RL----------   74 (290)
T ss_pred             HHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCC-CccHHHHHhcCCCCCEEEEecCCCC--Cc----------
Confidence            3344444556679999999999999999999999885211 11000   01223455666553211  00          


Q ss_pred             CccCHHHHHHHHhh----ccC-CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCC
Q psy4730        1417 WRDGILAKTFREMA----VST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFAS 1491 (1513)
Q Consensus      1417 W~DG~l~~~lR~~~----~~~-~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~as 1491 (1513)
                          +=...+|+..    ..+ ....+.+|+|+ +|.-=.++-|++|   |+|     |  ..|+++.||+-+++....-
T Consensus        75 ----I~idqiR~l~~~~~~~p~e~~~kv~ii~~-ad~mt~~AaNaLL---K~L-----E--EPp~~~~fiL~~~~~~~ll  139 (290)
T PRK05917         75 ----HSIETPRAIKKQIWIHPYESPYKIYIIHE-ADRMTLDAISAFL---KVL-----E--DPPQHGVIILTSAKPQRLP  139 (290)
T ss_pred             ----CcHHHHHHHHHHHhhCccCCCceEEEEec-hhhcCHHHHHHHH---HHh-----h--cCCCCeEEEEEeCChhhCc
Confidence                1123334432    222 35678888886 3333456667776   222     1  1477899999999999998


Q ss_pred             cchhhccEEEEeeCC
Q psy4730        1492 PATVSRVGMIYFELK 1506 (1513)
Q Consensus      1492 PatvsRcg~v~~~~~ 1506 (1513)
                      |.-.|||-.+.|.+-
T Consensus       140 ~TI~SRcq~~~~~~~  154 (290)
T PRK05917        140 PTIRSRSLSIHIPME  154 (290)
T ss_pred             HHHHhcceEEEccch
Confidence            988999999999863

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.06  E-value=0.031  Score=73.06  Aligned_cols=45  Identities=9%  Similarity=0.200  Sum_probs=34.9

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+.||.+++.+. .|.+-+++|...+.+.+++.+.+......++..
T Consensus       149 ~vrFILaTTe~~-kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~  193 (944)
T PRK14949        149 HVKFLLATTDPQ-KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ  193 (944)
T ss_pred             CeEEEEECCCch-hchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH
Confidence            455666655543 377889999999999999999999888777653

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.04  E-value=0.041  Score=69.58  Aligned_cols=45  Identities=13%  Similarity=0.186  Sum_probs=34.3

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+.||.++..+ +.+++.+++|..++.+.+++.+++......++..
T Consensus       149 ~v~fIL~Ttd~-~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~  193 (546)
T PRK14957        149 YVKFILATTDY-HKIPVTILSRCIQLHLKHISQADIKDQLKIILAK  193 (546)
T ss_pred             CceEEEEECCh-hhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHH
Confidence            35566666544 4455669999999999999999998888877654

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=96.04  E-value=0.022  Score=68.22  Aligned_cols=126  Identities=14%  Similarity=0.187  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhcccccc
Q psy4730        1336 WYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFD 1411 (1513)
Q Consensus      1336 ~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~ 1411 (1513)
                      .+..-.-++..+.....+|+|.|++||||+++.+.+...-.+-           ...+..||+.+++    -.+|||.-.
T Consensus         7 ~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~-----------~~pfv~vnc~~~~~~~l~~~lfG~~~   75 (329)
T TIGR02974         7 AFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRW-----------QGPLVKLNCAALSENLLDSELFGHEA   75 (329)
T ss_pred             HHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCcc-----------CCCeEEEeCCCCChHHHHHHHhcccc
Confidence            3444455566667778899999999999999999887543320           1356788888886    357888532


Q ss_pred             CC---CCCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEee
Q psy4730        1412 SA---SHEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC 1484 (1513)
Q Consensus      1412 ~~---t~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~ 1484 (1513)
                      ..   ......|.+..+          ..-=+++|  +.+++..-..|-.+|++...-.+.+.  -..+.++|+|+-+
T Consensus        76 g~~~ga~~~~~G~~~~a----------~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~at  141 (329)
T TIGR02974        76 GAFTGAQKRHQGRFERA----------DGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGS--QTLQVDVRLVCAT  141 (329)
T ss_pred             ccccCcccccCCchhhC----------CCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCC--ceeccceEEEEec
Confidence            10   001233433211          12458888  57788888999999987765444333  3556789999977

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=96.03  E-value=0.021  Score=68.29  Aligned_cols=142  Identities=15%  Similarity=0.155  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhh-ccccc---------ccceeEEEecCCCCChhhcc
Q psy4730        1338 IEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-SATMK---------EFKTGYKIINPKSITMGQLY 1407 (1513)
Q Consensus      1338 ~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~-~~~~~---------~~~~~~~~inp~~~t~~eL~ 1407 (1513)
                      -....+.++.-+..|+.++.||+|+||+++...+|+++.=..... .+++.         +.+.+++.+.|..-.     
T Consensus        11 ~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~-----   85 (334)
T PRK07993         11 YEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGK-----   85 (334)
T ss_pred             HHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccc-----
Confidence            345566666677789999999999999999999999985221111 12222         134556666663110     


Q ss_pred             ccccCCCCCCccCHHHHHHHHhhc-----cCCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEE
Q psy4730        1408 GEFDSASHEWRDGILAKTFREMAV-----STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIF 1482 (1513)
Q Consensus      1408 G~~~~~t~eW~DG~l~~~lR~~~~-----~~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iF 1482 (1513)
                                 ..+=..-+|+...     ...+.++.+|+|. +|.-=.++=|++|   |+|     |  ..|+++-||.
T Consensus        86 -----------~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~-ae~m~~~AaNaLL---KtL-----E--EPp~~t~fiL  143 (334)
T PRK07993         86 -----------SSLGVDAVREVTEKLYEHARLGGAKVVWLPD-AALLTDAAANALL---KTL-----E--EPPENTWFFL  143 (334)
T ss_pred             -----------ccCCHHHHHHHHHHHhhccccCCceEEEEcc-hHhhCHHHHHHHH---HHh-----c--CCCCCeEEEE
Confidence                       0122344555432     2235778899986 3333334556665   221     1  1477888999


Q ss_pred             eecCCCCCCcchhhccEEEEeeCC
Q psy4730        1483 ECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1483 E~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
                      -+++....-|.-+|||-.++|.+-
T Consensus       144 ~t~~~~~lLpTIrSRCq~~~~~~~  167 (334)
T PRK07993        144 ACREPARLLATLRSRCRLHYLAPP  167 (334)
T ss_pred             EECChhhChHHHHhccccccCCCC
Confidence            999999998988999999998764

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=96.01  E-value=0.015  Score=76.23  Aligned_cols=119  Identities=12%  Similarity=0.041  Sum_probs=79.7

Q ss_pred             HHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCCCCCCc
Q psy4730        1343 QVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSASHEWR 1418 (1513)
Q Consensus      1343 qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~t~eW~ 1418 (1513)
                      ++-.+.....+|+|.|+|||||+++.+.+.....+-           ...+..+|+.+++    -++|||+.......-.
T Consensus       340 ~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~-----------~~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~  408 (638)
T PRK11388        340 FGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERA-----------AGPYIAVNCQLYPDEALAEEFLGSDRTDSENGR  408 (638)
T ss_pred             HHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCcc-----------CCCeEEEECCCCChHHHHHHhcCCCCcCccCCC
Confidence            334445677899999999999999999987654321           1356889999987    4689997632222222


Q ss_pred             cCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEee
Q psy4730        1419 DGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC 1484 (1513)
Q Consensus      1419 DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~ 1484 (1513)
                      -|.|.    .+      ..-=+++|  |.+++.--+.|-.+|++.....+.+.  -..+-++|+|+-+
T Consensus       409 ~g~~~----~a------~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~--~~~~~~~riI~~t  464 (638)
T PRK11388        409 LSKFE----LA------HGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSR--RLIPVDVRVIATT  464 (638)
T ss_pred             CCcee----EC------CCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCC--ceEEeeEEEEEec
Confidence            33321    11      12458888  67888888999999977766555333  3345568999866

>PRK14532 adenylate kinase; Provisional

Probab=96.00  E-value=0.01  Score=65.06  Aligned_cols=24  Identities=25%  Similarity=0.380  Sum_probs=21.7

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .|+|+|+|||||||..+.|++.++
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g   25 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERG   25 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            489999999999999999998765

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=95.99  E-value=0.018  Score=72.82  Aligned_cols=119  Identities=18%  Similarity=0.215  Sum_probs=80.8

Q ss_pred             HHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCC----CCCC
Q psy4730        1346 EMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSA----SHEW 1417 (1513)
Q Consensus      1346 ~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~----t~eW 1417 (1513)
                      .......+|+|.|++||||+.+.+.+...-.+           ..-.+..||+.+++    -.+|||+-...    ....
T Consensus       230 ~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r-----------~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~  298 (526)
T TIGR02329       230 LYARSDATVLILGESGTGKELVAQAIHQLSGR-----------RDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGG  298 (526)
T ss_pred             HHhCCCCcEEEECCCCcCHHHHHHHHHHhcCc-----------CCCCEEEeccccCChhHHHHHhcCCcccccccccccc
Confidence            44556789999999999999999998755322           12356789998887    46899963211    1112


Q ss_pred             ccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEee-cCC
Q psy4730        1418 RDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC-ENL 1487 (1513)
Q Consensus      1418 ~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~-~~l 1487 (1513)
                      .-|+|..+          ..-=++||  |.+++..-..|-.+|.+.....+.+.+  ..+.++|+++-+ .||
T Consensus       299 ~~Gl~e~A----------~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~--~~~~dvRiIaat~~~l  359 (526)
T TIGR02329       299 RTGLIEAA----------HRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTE--PVPVDVRVVAATHCAL  359 (526)
T ss_pred             cccchhhc----------CCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCc--eeeecceEEeccCCCH
Confidence            23333211          12448888  788999999999999887766664444  456679999976 344

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>PRK06620 hypothetical protein; Validated

Probab=95.98  E-value=0.015  Score=65.20  Aligned_cols=42  Identities=12%  Similarity=0.150  Sum_probs=33.0

Q ss_pred             EEEEeecCC-CCCCChhhhccce---EeecCCCChHHHHHHHHHHhh
Q psy4730         935 IYITAMIPT-MNTITGRLLRHMN---IISIDSFNEATLSKIFTSVLD  977 (1513)
Q Consensus       935 ~~~~a~~~~-~~~~~~r~~~~f~---~~~~~~~~~~~l~~i~~~~l~  977 (1513)
                      .+++|..|| .-.+ |++.+|+.   ++.+.+|+.+++..+......
T Consensus       116 ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~  161 (214)
T PRK06620        116 LLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFS  161 (214)
T ss_pred             EEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence            456666655 3357 99999999   999999999998888877544

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.97  E-value=0.01  Score=76.31  Aligned_cols=124  Identities=19%  Similarity=0.204  Sum_probs=73.0

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccc---------cceeEEEecCCCCChhhccccccCCCCCCc
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWR 1418 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~ 1418 (1513)
                      +..|+.++.||+|+||||+.+.|+++++--.+. ..++..|         ...++..++..+                 .
T Consensus        36 ~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s-----------------~   98 (576)
T PRK14965         36 RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGAS-----------------N   98 (576)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccC-----------------c
Confidence            346899999999999999999999998632111 0111111         011122222111                 0


Q ss_pred             cCHHHHHHHHh----hcc-CCCCceEEEEcCCCChHHHHhhhccc---CCCCceeecCCCeeecCCCCeEEEeecCCCCC
Q psy4730        1419 DGILAKTFREM----AVS-TTPDRKWIMFDGPIDAVWIENMNTVL---DDNKKLCLINGEIIKMSNTMNLIFECENLEFA 1490 (1513)
Q Consensus      1419 DG~l~~~lR~~----~~~-~~~~~~WivfDG~~d~~wiE~LNsvL---Ddn~~L~L~nGe~i~~~~~~~~iFE~~~l~~a 1490 (1513)
                      -|  ..-+|+.    ... .....+-+|+|. +|-.=-+..|.+|   ++             .|+++.|||-|++....
T Consensus        99 ~~--v~~ir~l~~~~~~~p~~~~~KVvIIde-v~~Lt~~a~naLLk~LEe-------------pp~~~~fIl~t~~~~kl  162 (576)
T PRK14965         99 TG--VDDIRELRENVKYLPSRSRYKIFIIDE-VHMLSTNAFNALLKTLEE-------------PPPHVKFIFATTEPHKV  162 (576)
T ss_pred             cC--HHHHHHHHHHHHhccccCCceEEEEEC-hhhCCHHHHHHHHHHHHc-------------CCCCeEEEEEeCChhhh
Confidence            11  1122322    111 234568899996 2211123344443   33             37799999999999988


Q ss_pred             CcchhhccEEEEeeC
Q psy4730        1491 SPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1491 sPatvsRcg~v~~~~ 1505 (1513)
                      .|+-.|||..+.|.+
T Consensus       163 ~~tI~SRc~~~~f~~  177 (576)
T PRK14965        163 PITILSRCQRFDFRR  177 (576)
T ss_pred             hHHHHHhhhhhhcCC
Confidence            888899999988764

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=95.94  E-value=0.15  Score=61.22  Aligned_cols=82  Identities=15%  Similarity=0.173  Sum_probs=49.2

Q ss_pred             HHhhccC-CCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC------CCCCChhhhccceE--ee
Q psy4730         889 MILDDLN-MPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------MNTITGRLLRHMNI--IS  959 (1513)
Q Consensus       889 ~~~dd~n-~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------~~~~~~r~~~~f~~--~~  959 (1513)
                      +|+|++. ||.       ..-.-|-.+++.|.+...+... ..-.|+.+|+|++.+      ...+.+.|+.|++.  +.
T Consensus        97 L~Ldei~~L~~-------~~Q~~Ll~~l~~~~~~~~g~~~-~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~  168 (329)
T TIGR02974        97 LFLDELATASL-------LVQEKLLRVIEYGEFERVGGSQ-TLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVIT  168 (329)
T ss_pred             EEeCChHhCCH-------HHHHHHHHHHHcCcEEecCCCc-eeccceEEEEechhhHHHHhhcCchHHHHHHHhcchhcC
Confidence            3457776 443       1334445556655554333322 233589999999875      35677889999966  55


Q ss_pred             cCCCC--hHHHHHHHHHHhhh
Q psy4730         960 IDSFN--EATLSKIFTSVLDW  978 (1513)
Q Consensus       960 ~~~~~--~~~l~~i~~~~l~~  978 (1513)
                      +++..  .+++..+...++..
T Consensus       169 lPpLReR~eDI~~L~~~fl~~  189 (329)
T TIGR02974       169 LPPLRERQEDIMLLAEHFAIR  189 (329)
T ss_pred             CCchhhhhhhHHHHHHHHHHH
Confidence            55554  24677776666544

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=95.94  E-value=0.01  Score=70.87  Aligned_cols=144  Identities=21%  Similarity=0.282  Sum_probs=85.9

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccc---------------------c-----ceeEEEecCCCCChhh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKE---------------------F-----KTGYKIINPKSITMGQ 1405 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~---------------------~-----~~~~~~inp~~~t~~e 1405 (1513)
                      .||+|.|++||||||+.+.+++.+..........-.+                     .     ++.+.. =|-..|-+.
T Consensus        39 ~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lp~~~ted~  117 (350)
T CHL00081         39 GGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQNGETIETEKIKIPMVD-LPLGATEDR  117 (350)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhhcccccccceecccccee-cCCCCchhh
Confidence            4899999999999999999998886532110000000                     0     011111 245567889


Q ss_pred             ccccccCCCCCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEe
Q psy4730        1406 LYGEFDSASHEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFE 1483 (1513)
Q Consensus      1406 L~G~~~~~t~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE 1483 (1513)
                      |||.+|... .+..|..  .++.+.-. ....--+++|  +.+++.-...|-.+|++...-.-..|...+.|..+.++. 
T Consensus       118 l~G~iD~~~-al~~g~~--~~~~GlL~-~A~~GiL~lDEInrL~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfivia-  192 (350)
T CHL00081        118 VCGTIDIEK-ALTEGVK--AFEPGLLA-KANRGILYVDEVNLLDDHLVDILLDSAASGWNTVEREGISIRHPARFVLVG-  192 (350)
T ss_pred             ccCcccHHH-HhhcCcc--cccCCeee-ecCCCEEEecChHhCCHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEe-
Confidence            999998653 3444421  12222110 1234678888  567887777777777764333334577777676554444 


Q ss_pred             ecCCC--CCCcchhhccEEE
Q psy4730        1484 CENLE--FASPATVSRVGMI 1501 (1513)
Q Consensus      1484 ~~~l~--~asPatvsRcg~v 1501 (1513)
                      +.|..  ...|+..-|.+|.
T Consensus       193 T~np~eg~l~~~LldRf~l~  212 (350)
T CHL00081        193 SGNPEEGELRPQLLDRFGMH  212 (350)
T ss_pred             ccCcccCCCCHHHHHHhCce
Confidence            55543  3788888888863

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=95.93  E-value=0.17  Score=65.44  Aligned_cols=131  Identities=18%  Similarity=0.192  Sum_probs=73.3

Q ss_pred             CCccccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccccc----------eEEecCceEEEEEecCCCCCCCCCch
Q psy4730        1122 PGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGT----------EISLNPTSMIFITMNPGYAGRTELPD 1191 (1513)
Q Consensus      1122 ~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g~----------~i~~~p~~~iFiTmNp~y~gr~~LP~ 1191 (1513)
                      .|.-+++||++.+++++-..+       .++++.+.  +...|.          +.++.-++.+-++.||..  -.++.+
T Consensus       217 ngGtL~Ldei~~L~~~~q~~L-------l~~L~~~~--i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~--l~~l~~  285 (608)
T TIGR00764       217 HKGVLYIDEIKTMPLEVQQYL-------LTALQDKK--FPITGQSENSSGAMVRTEPVPCDFILVASGNLDD--LEGMHP  285 (608)
T ss_pred             CCCEEEEEChHhCCHHHHHHH-------HHHHHhCc--EEecCccccccccccCCCCCccceEEEEECCHHH--HhhcCH
Confidence            788899999999997765433       34444332  222221          122334788999999852  136889


Q ss_pred             hHHhhhh------cccccCCCh----HHHHHHH---HHhcC-cc-chHHHHHHHHHHHHHHHhhccCCCCCCcchhhHHH
Q psy4730        1192 NLKVLFR------SVAMMVPDY----AMIGEIS---LYSMG-FQ-NAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKS 1256 (1513)
Q Consensus      1192 nLk~lFR------~v~~~~PD~----~~I~ei~---L~~~G-F~-~a~~la~ki~~~~~l~~~~ls~q~~yd~glR~lk~ 1256 (1513)
                      .|+.+|+      .+....|+.    ..++...   +-..| .. -++.-..+++.   .+++....+.+...-.|.+..
T Consensus       286 ~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~---~~~R~ag~r~~lsl~~R~L~~  362 (608)
T TIGR00764       286 ALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVR---EAQRRAGRKDHLTLRLRELGG  362 (608)
T ss_pred             HHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHH---HHHHHHhcccccCCCHHHHHH
Confidence            9999999      233334442    1122211   11122 11 01122223333   334444556666777899999


Q ss_pred             HHHHhhhhhh
Q psy4730        1257 VLNAAGSLKI 1266 (1513)
Q Consensus      1257 vl~~a~~l~~ 1266 (1513)
                      +++.|....+
T Consensus       363 llR~A~~iA~  372 (608)
T TIGR00764       363 LVRAAGDIAK  372 (608)
T ss_pred             HHHHHHHHHH
Confidence            9999866543

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=95.91  E-value=0.059  Score=62.66  Aligned_cols=50  Identities=24%  Similarity=0.425  Sum_probs=37.4

Q ss_pred             cccccchhhhhHHHHHHHHhcCCc-cceeccCCCccchHhHHHHHhccCcC
Q psy4730         707 DLIIPTNVTCMQNFFINLYLQNDV-PMMFVGPTGTGKSTIVLNLLLNLSKD  756 (1513)
Q Consensus       707 ~~~v~t~~~~~~~~~~~~~~~~~~-~~ll~G~~g~GKt~~v~~~~~~~~~~  756 (1513)
                      ..|.++....+....+...+..+. .++++||+|+|||++++.+...+...
T Consensus        20 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~   70 (269)
T TIGR03015        20 DFFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQE   70 (269)
T ss_pred             HHhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC
Confidence            346677666666666666666555 58899999999999999998876543

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=95.90  E-value=0.023  Score=71.86  Aligned_cols=128  Identities=16%  Similarity=0.187  Sum_probs=82.7

Q ss_pred             HHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCC----CCCC
Q psy4730        1346 EMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSA----SHEW 1417 (1513)
Q Consensus      1346 ~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~----t~eW 1417 (1513)
                      ..-.+..+|+|.|++||||+.+.+.+...+....+..+   ....-.+..||+.+++    -.+|||+-+..    +...
T Consensus       237 ~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S---~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~  313 (538)
T PRK15424        237 LYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQ---GKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGG  313 (538)
T ss_pred             HHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccC---ccCCCCeEEeecccCChhhHHHHhcCCccccccCccccc
Confidence            34556789999999999999999999876321111000   0012357888988887    46899963311    1112


Q ss_pred             ccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEee-cCCC
Q psy4730        1418 RDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC-ENLE 1488 (1513)
Q Consensus      1418 ~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~-~~l~ 1488 (1513)
                      .-|+|..+          ..-=++||  |.+++..-..|-.+|++.....+.+..  .++-++|+|+-| .||.
T Consensus       314 ~~Gl~e~A----------~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~--~~~~dvRiIaat~~~L~  375 (538)
T PRK15424        314 RAGLFEIA----------HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQ--PVPVDVRVISATHCDLE  375 (538)
T ss_pred             cCCchhcc----------CCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCc--eeccceEEEEecCCCHH
Confidence            33433211          12458889  788999999999999887666654433  456789999976 4443

>PF13173 AAA_14: AAA domain

Probab=95.88  E-value=0.032  Score=57.17  Aligned_cols=27  Identities=33%  Similarity=0.600  Sum_probs=23.8

Q ss_pred             CCccceeccCCCccchHhHHHHHhccC
Q psy4730         728 NDVPMMFVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       728 ~~~~~ll~G~~g~GKt~~v~~~~~~~~  754 (1513)
                      |++.+++.||.|||||+++..++..+.
T Consensus         1 n~~~~~l~G~R~vGKTtll~~~~~~~~   27 (128)
T PF13173_consen    1 NRKIIILTGPRGVGKTTLLKQLAKDLL   27 (128)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence            567899999999999999999987653

>PRK14530 adenylate kinase; Provisional

Probab=95.87  E-value=0.0088  Score=67.20  Aligned_cols=25  Identities=24%  Similarity=0.393  Sum_probs=22.8

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|+|+|+|||||||+.+.|++.++
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~~~   28 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEEFG   28 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4589999999999999999998875

>KOG0743|consensus

Probab=95.85  E-value=0.048  Score=65.55  Aligned_cols=41  Identities=15%  Similarity=0.217  Sum_probs=33.0

Q ss_pred             EEeecCCCCCCChhhhc--cceE-eecCCCChHHHHHHHHHHhhh
Q psy4730         937 ITAMIPTMNTITGRLLR--HMNI-ISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       937 ~~a~~~~~~~~~~r~~~--~f~~-~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      |-++|+. -.++|.|+|  |.-. ++|.+.+-+....+++++|..
T Consensus       342 vFTTNh~-EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~  385 (457)
T KOG0743|consen  342 VFTTNHK-EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGI  385 (457)
T ss_pred             EEecCCh-hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCC
Confidence            4455553 358999999  7776 999999999999999998864

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=95.83  E-value=0.012  Score=72.95  Aligned_cols=138  Identities=22%  Similarity=0.226  Sum_probs=86.5

Q ss_pred             HHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccccceeEEEecCC-CCChhhccccccCCCCCCccC
Q psy4730        1343 QVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKEFKTGYKIINPK-SITMGQLYGEFDSASHEWRDG 1420 (1513)
Q Consensus      1343 qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~~~~~~~~inp~-~~t~~eL~G~~~~~t~eW~DG 1420 (1513)
                      .....-+..|+-++.||=|+||||+.+++|++++-.+.. ..+++.|..  +.-|+.. .++.-|    +|-.++.   |
T Consensus        30 nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~--Ck~I~~g~~~DviE----iDaASn~---g  100 (515)
T COG2812          30 NALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS--CKEINEGSLIDVIE----IDAASNT---G  100 (515)
T ss_pred             HHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh--hHhhhcCCcccchh----hhhhhcc---C
Confidence            344444567999999999999999999999999865431 112222211  1122222 111111    2222222   3


Q ss_pred             HHHHHHHHhhcc----C-CCCceEEEEcC-CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcch
Q psy4730        1421 ILAKTFREMAVS----T-TPDRKWIMFDG-PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPAT 1494 (1513)
Q Consensus      1421 ~l~~~lR~~~~~----~-~~~~~WivfDG-~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPat 1494 (1513)
                      |  .-+|+....    + ..+.+-+|.|- |+-+  -.+.|++|   |+|=       ..|+++.|||-|++.....|.-
T Consensus       101 V--ddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--~~afNALL---KTLE-------EPP~hV~FIlATTe~~Kip~TI  166 (515)
T COG2812         101 V--DDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--KQAFNALL---KTLE-------EPPSHVKFILATTEPQKIPNTI  166 (515)
T ss_pred             h--HHHHHHHHHhccCCccccceEEEEecHHhhh--HHHHHHHh---cccc-------cCccCeEEEEecCCcCcCchhh
Confidence            2  345655432    2 34568888884 5544  58889997   2221       2588999999999999999999


Q ss_pred             hhccEEEEe
Q psy4730        1495 VSRVGMIYF 1503 (1513)
Q Consensus      1495 vsRcg~v~~ 1503 (1513)
                      +|||--..|
T Consensus       167 lSRcq~f~f  175 (515)
T COG2812         167 LSRCQRFDF  175 (515)
T ss_pred             hhccccccc
Confidence            999986554

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.83  E-value=0.03  Score=72.24  Aligned_cols=130  Identities=15%  Similarity=0.154  Sum_probs=74.3

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhh--hcccccc---------cceeEEEecCCCCChhhccccccCCCCCCc
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAK--KSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWR 1418 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~--~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~ 1418 (1513)
                      ..|+.++.||+|+||||+.+.+++.+.-....  ..++..|         ...+++.+++....     |         .
T Consensus        38 l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~~-----~---------v  103 (614)
T PRK14971         38 LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAASNN-----S---------V  103 (614)
T ss_pred             CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecccccC-----C---------H
Confidence            45789999999999999999999998521110  0111111         11223333322100     0         0


Q ss_pred             cCHHHHHHHHhhcc-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeee-cCCCCeEEEeecCCCCCCcchhh
Q psy4730        1419 DGILAKTFREMAVS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIK-MSNTMNLIFECENLEFASPATVS 1496 (1513)
Q Consensus      1419 DG~l~~~lR~~~~~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~-~~~~~~~iFE~~~l~~asPatvs 1496 (1513)
                      | -+-.++.+.... ....++.+|+|+ +|-.=.++.|.+|.           .+. .|+++.|||-+++.....|+-.|
T Consensus       104 d-~Ir~li~~~~~~P~~~~~KVvIIde-a~~Ls~~a~naLLK-----------~LEepp~~tifIL~tt~~~kIl~tI~S  170 (614)
T PRK14971        104 D-DIRNLIEQVRIPPQIGKYKIYIIDE-VHMLSQAAFNAFLK-----------TLEEPPSYAIFILATTEKHKILPTILS  170 (614)
T ss_pred             H-HHHHHHHHHhhCcccCCcEEEEEEC-cccCCHHHHHHHHH-----------HHhCCCCCeEEEEEeCCchhchHHHHh
Confidence            0 112223322222 234678999996 11111234444441           111 36678899999888999999999


Q ss_pred             ccEEEEeeCC
Q psy4730        1497 RVGMIYFELK 1506 (1513)
Q Consensus      1497 Rcg~v~~~~~ 1506 (1513)
                      ||.++.|.+-
T Consensus       171 Rc~iv~f~~l  180 (614)
T PRK14971        171 RCQIFDFNRI  180 (614)
T ss_pred             hhheeecCCC
Confidence            9999988753

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.83  E-value=0.012  Score=74.67  Aligned_cols=125  Identities=18%  Similarity=0.156  Sum_probs=71.9

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccc---------cceeEEEecCCCCChhhccccccCCCCCCcc
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWRD 1419 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~D 1419 (1513)
                      ..|.+++.||+|+||||+.++|++++.--... ..++..|         ....+..|++.                 ...
T Consensus        37 i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a-----------------~~~   99 (624)
T PRK14959         37 VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGA-----------------SNR   99 (624)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecc-----------------ccc
Confidence            35789999999999999999999998631111 1111111         11122223221                 111


Q ss_pred             CHHHHHHHHh----hc-cCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCc
Q psy4730        1420 GILAKTFREM----AV-STTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASP 1492 (1513)
Q Consensus      1420 G~l~~~lR~~----~~-~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asP 1492 (1513)
                      |+  ..+|+.    .. ......+.||+|.  .++.   +..|++|.-     |-+     .++++.|||-+++.....+
T Consensus       100 ~I--d~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~---~a~naLLk~-----LEE-----P~~~~ifILaTt~~~kll~  164 (624)
T PRK14959        100 GI--DDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR---EAFNALLKT-----LEE-----PPARVTFVLATTEPHKFPV  164 (624)
T ss_pred             CH--HHHHHHHHHHHhhhhcCCceEEEEEChHhCCH---HHHHHHHHH-----hhc-----cCCCEEEEEecCChhhhhH
Confidence            22  223332    11 1234678999995  2233   334444321     000     2467889998888888877


Q ss_pred             chhhccEEEEeeCC
Q psy4730        1493 ATVSRVGMIYFELK 1506 (1513)
Q Consensus      1493 atvsRcg~v~~~~~ 1506 (1513)
                      ...|||..+.|.+-
T Consensus       165 TI~SRcq~i~F~pL  178 (624)
T PRK14959        165 TIVSRCQHFTFTRL  178 (624)
T ss_pred             HHHhhhhccccCCC
Confidence            77999999887653

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=95.80  E-value=0.006  Score=61.60  Aligned_cols=23  Identities=30%  Similarity=0.475  Sum_probs=21.5

Q ss_pred             EEEeccCCCCchHHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      |+|.|+|||||||+.+.|++.++
T Consensus         2 I~I~G~~gsGKST~a~~La~~~~   24 (121)
T PF13207_consen    2 IIISGPPGSGKSTLAKELAERLG   24 (121)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            78999999999999999998875

...

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=95.79  E-value=0.13  Score=65.32  Aligned_cols=65  Identities=20%  Similarity=0.286  Sum_probs=42.3

Q ss_pred             CccccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeecccccc
Q psy4730         705 PSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSART  769 (1513)
Q Consensus       705 ~~~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t  769 (1513)
                      |.+++-......+....+..+-..+.|||+.|++||||+++++..-........-...+++....
T Consensus       211 f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~  275 (526)
T TIGR02329       211 LDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIA  275 (526)
T ss_pred             hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCC
Confidence            33444444445556667777788999999999999999999998765432222222345555443

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=95.75  E-value=0.012  Score=64.19  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=21.3

Q ss_pred             EEEeccCCCCchHHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      |+++|+|||||||..+.|++.++
T Consensus         2 i~i~G~pGsGKst~a~~la~~~~   24 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVENFG   24 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            78999999999999999998775

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=95.73  E-value=0.021  Score=68.26  Aligned_cols=81  Identities=12%  Similarity=0.222  Sum_probs=55.1

Q ss_pred             HHhhccCCCCCccCCCCChHHHHHHHHhcC-CccccCCceeeeecceEEEEeecCCCCCCChhhhccceE-eecCCCCh-
Q psy4730         889 MILDDLNMPQKETYGAQPAVELLRQIIDHK-HLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNI-ISIDSFNE-  965 (1513)
Q Consensus       889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~-~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~-~~~~~~~~-  965 (1513)
                      +|+||+|.-..+      ....|-+.++.| .-+++.......-..+.++|++||....+++.++.||.+ +.+++|+. 
T Consensus       148 L~lDEInrL~~~------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~  221 (350)
T CHL00081        148 LYVDEVNLLDDH------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDP  221 (350)
T ss_pred             EEecChHhCCHH------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCCh
Confidence            678999955433      344455556554 344444333333348889999999877799999999997 78899985 


Q ss_pred             HHHHHHHHHH
Q psy4730         966 ATLSKIFTSV  975 (1513)
Q Consensus       966 ~~l~~i~~~~  975 (1513)
                      +.-..|...-
T Consensus       222 ~~e~~il~~~  231 (350)
T CHL00081        222 ELRVKIVEQR  231 (350)
T ss_pred             HHHHHHHHhh
Confidence            6655666553

>TIGR00368 Mg chelatase-related protein

Probab=95.73  E-value=0.013  Score=73.42  Aligned_cols=141  Identities=14%  Similarity=0.106  Sum_probs=89.5

Q ss_pred             HHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccc-------------cccceeEEEecCCCCChhhccccccCCC
Q psy4730        1348 ILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATM-------------KEFKTGYKIINPKSITMGQLYGEFDSAS 1414 (1513)
Q Consensus      1348 ~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~-------------~~~~~~~~~inp~~~t~~eL~G~~~~~t 1414 (1513)
                      ....|.++|+|||||||||+.+.++..+..+........             ......-++-.+.+.+...++|.-    
T Consensus       208 a~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg----  283 (499)
T TIGR00368       208 AAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGG----  283 (499)
T ss_pred             ccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCc----
Confidence            446688999999999999999999876543321100000             000001112223444566666621    


Q ss_pred             CCCccCHHHHHHHHhhccCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecC------
Q psy4730        1415 HEWRDGILAKTFREMAVSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN------ 1486 (1513)
Q Consensus      1415 ~eW~DG~l~~~lR~~~~~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~------ 1486 (1513)
                      ...+.|.++.+          ..-.+.+|.  .+++...|.|..+|++...-.-..|..+..|.++++|..+..      
T Consensus       284 ~~~~pG~i~lA----------~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~  353 (499)
T TIGR00368       284 PIPLPGEISLA----------HNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHY  353 (499)
T ss_pred             cccchhhhhcc----------CCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcC
Confidence            12455655322          235788884  568889999999998865443445667888999999998864      


Q ss_pred             -----------------CCCCCcchhhccEEEE
Q psy4730        1487 -----------------LEFASPATVSRVGMIY 1502 (1513)
Q Consensus      1487 -----------------l~~asPatvsRcg~v~ 1502 (1513)
                                       +...|++...|..+..
T Consensus       354 ~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~  386 (499)
T TIGR00368       354 GGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSV  386 (499)
T ss_pred             CCCcccccCCHHHHHHHhhhccHhHHhhCCEEE
Confidence                             2358888888988864

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>smart00350 MCM minichromosome maintenance proteins

Probab=95.72  E-value=0.052  Score=69.05  Aligned_cols=126  Identities=11%  Similarity=0.219  Sum_probs=79.9

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEE---ecCCCCChhhccccccCCCCCCc--cCHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKI---INPKSITMGQLYGEFDSASHEWR--DGILAKTF 1426 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~---inp~~~t~~eL~G~~~~~t~eW~--DG~l~~~l 1426 (1513)
                      -.|+|+|+||+|||++.+.+++...+             ..+..   .+...++...+   .++.+++|.  -|.+..  
T Consensus       237 ~~vLL~G~pGtGKs~lar~l~~~~~r-------------~~~~~~~~~~~~~l~~~~~---~~~~~g~~~~~~G~l~~--  298 (509)
T smart00350      237 INILLLGDPGTAKSQLLKYVEKTAPR-------------AVYTTGKGSSAVGLTAAVT---RDPETREFTLEGGALVL--  298 (509)
T ss_pred             ceEEEeCCCChhHHHHHHHHHHHcCc-------------ceEcCCCCCCcCCccccce---EccCcceEEecCccEEe--
Confidence            37999999999999999999887543             11111   01111222111   233445553  333221  


Q ss_pred             HHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeec-CCCeeecCCCCeEEEeecCCC-------------CC
Q psy4730        1427 REMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLI-NGEIIKMSNTMNLIFECENLE-------------FA 1490 (1513)
Q Consensus      1427 R~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~-nGe~i~~~~~~~~iFE~~~l~-------------~a 1490 (1513)
                              ...--+++|  ..+++.-...|..+|++. .+++. .|....+|..+++|--+....             ..
T Consensus       299 --------A~~Gil~iDEi~~l~~~~q~~L~e~me~~-~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l  369 (509)
T smart00350      299 --------ADNGVCCIDEFDKMDDSDRTAIHEAMEQQ-TISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDL  369 (509)
T ss_pred             --------cCCCEEEEechhhCCHHHHHHHHHHHhcC-EEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCC
Confidence                    122466777  345666677778888654 55554 588888999988887766442             68


Q ss_pred             CcchhhccEEEEee
Q psy4730        1491 SPATVSRVGMIYFE 1504 (1513)
Q Consensus      1491 sPatvsRcg~v~~~ 1504 (1513)
                      +||.+||..|+++-
T Consensus       370 ~~~lLsRFdLi~~~  383 (509)
T smart00350      370 PAPILSRFDLLFVV  383 (509)
T ss_pred             ChHHhCceeeEEEe
Confidence            99999999998754

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.70  E-value=0.41  Score=61.40  Aligned_cols=45  Identities=9%  Similarity=0.180  Sum_probs=35.1

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+.||.+++.+ +.|.+-+.+|...+.+..++.+++......++..
T Consensus       148 ~~~fIL~tte~-~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~  192 (584)
T PRK14952        148 HLIFIFATTEP-EKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQ  192 (584)
T ss_pred             CeEEEEEeCCh-HhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHH
Confidence            45566666444 5788899999999999999999988888777653

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=95.69  E-value=0.023  Score=69.76  Aligned_cols=114  Identities=19%  Similarity=0.252  Sum_probs=65.5

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
                      ..+|+|+||||||||++.+.|++.++              +.+.+++...++...+.|.-       .++++..+++...
T Consensus       108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~--------------~pf~~id~~~l~~~gyvG~d-------~e~~l~~l~~~~~  166 (412)
T PRK05342        108 KSNILLIGPTGSGKTLLAQTLARILD--------------VPFAIADATTLTEAGYVGED-------VENILLKLLQAAD  166 (412)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHhC--------------CCceecchhhcccCCcccch-------HHHHHHHHHHhcc
Confidence            46899999999999999999997764              34566666665544444431       1234444443221


Q ss_pred             c-cCCCCceEEEEcC--CCCh--------------HHHHhhhcccCCCCceeecC-CCeeecCCCCeEEEeecCC
Q psy4730        1431 V-STTPDRKWIMFDG--PIDA--------------VWIENMNTVLDDNKKLCLIN-GEIIKMSNTMNLIFECENL 1487 (1513)
Q Consensus      1431 ~-~~~~~~~WivfDG--~~d~--------------~wiE~LNsvLDdn~~L~L~n-Ge~i~~~~~~~~iFE~~~l 1487 (1513)
                      . -......-|++|.  -+.+              ...-.|-.+|| .....+|. |.+.. |..-.+++-|+|+
T Consensus       167 ~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Le-g~~~~v~~~gg~~~-~~~~~~~i~t~ni  239 (412)
T PRK05342        167 YDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILE-GTVASVPPQGGRKH-PQQEFIQVDTTNI  239 (412)
T ss_pred             ccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHh-cCeEEeCCCCCcCc-CCCCeEEeccCCc
Confidence            0 0112346788883  1111              25567888886 55666653 33322 2234455555555

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=95.69  E-value=0.13  Score=68.09  Aligned_cols=61  Identities=20%  Similarity=0.209  Sum_probs=39.4

Q ss_pred             cccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeecccc
Q psy4730         707 DLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSA  767 (1513)
Q Consensus       707 ~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~  767 (1513)
                      +++-......+....+..+-..+.|||++|++|||||.++..+-........-...+++..
T Consensus       377 ~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~  437 (686)
T PRK15429        377 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA  437 (686)
T ss_pred             ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEeccc
Confidence            3433334444555566667788999999999999999999887654432222223444443

>PRK08084 DNA replication initiation factor; Provisional

Probab=95.69  E-value=0.023  Score=64.71  Aligned_cols=26  Identities=8%  Similarity=0.123  Sum_probs=23.0

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .+++|.||+|||||++.++++.....
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~~~~~   71 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACAELSQ   71 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHh
Confidence            58999999999999999998877653

>PRK06851 hypothetical protein; Provisional

Probab=95.65  E-value=0.015  Score=69.78  Aligned_cols=41  Identities=17%  Similarity=0.249  Sum_probs=30.5

Q ss_pred             CccceeccCCCccchHhHHHHHhccCcCcccceeecccccc
Q psy4730         729 DVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSART  769 (1513)
Q Consensus       729 ~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t  769 (1513)
                      .+..++.|+||||||+++..+...+....+......++..-
T Consensus       214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dP  254 (367)
T PRK06851        214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDP  254 (367)
T ss_pred             ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            34688999999999999999988776666655555554433

>KOG0482|consensus

Probab=95.64  E-value=0.15  Score=61.46  Aligned_cols=245  Identities=18%  Similarity=0.206  Sum_probs=149.8

Q ss_pred             hccccCcccchhhcccceecccccc-cc--ccCCccccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccccceEEe
Q psy4730        1093 KNKITDKTISADDLRSLFFGNFLGN-TI--IFPGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISL 1169 (1513)
Q Consensus      1093 ~~~~~~~~~~~~~~~~l~f~~fv~~-~~--~~~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g~~i~~ 1169 (1513)
                      +.+.++-..+.+-+++.+.|..+-. +|  +..|.-+|+|||+.+.+.---+       |+.++.+..-++.--|-...+
T Consensus       407 GrGSSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtA-------IHEVMEQQTISIaKAGI~TtL  479 (721)
T KOG0482|consen  407 GRGSSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTA-------IHEVMEQQTISIAKAGINTTL  479 (721)
T ss_pred             CCCCCccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHH-------HHHHHHhhhhhhhhhccccch
Confidence            3444555667788888898888753 33  4578889999999988655432       233333332222233555678


Q ss_pred             cCceEEEEEecCCCC---CC------CCCchhHHhhhhccccc--CCCh---HHHHHHHHH-------------------
Q psy4730        1170 NPTSMIFITMNPGYA---GR------TELPDNLKVLFRSVAMM--VPDY---AMIGEISLY------------------- 1216 (1513)
Q Consensus      1170 ~p~~~iFiTmNp~y~---gr------~~LP~nLk~lFR~v~~~--~PD~---~~I~ei~L~------------------- 1216 (1513)
                      |..|+|.+.-||-|+   -|      -.||.+|-++|--+..+  .||.   ...++-..+                   
T Consensus       480 NAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~  559 (721)
T KOG0482|consen  480 NARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNL  559 (721)
T ss_pred             hhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHH
Confidence            899999999999652   22      35999999999888766  4544   222222222                   


Q ss_pred             -------hcC--ccchHHHHHHHHHHHHHHHhhc-cCCCCCCcchhhHHHHHHHhhhhhh-hCCCChHHHHHHHHHHhhc
Q psy4730        1217 -------SMG--FQNAKILAEKIVYTYKLCSEQL-SSQSHYDYGMRAVKSVLNAAGSLKI-KYPEKDEFVIVLRAIIDVN 1285 (1513)
Q Consensus      1217 -------~~G--F~~a~~la~ki~~~~~l~~~~l-s~q~~yd~glR~lk~vl~~a~~l~~-~~~~~~E~~~l~~ai~~~~ 1285 (1513)
                             +.-  -.-+..|+..|+..|-.+++.. ++.++--..-|.+-+||+.+..+.+ ...+.-|..-+-+||+.+-
T Consensus       560 mR~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme  639 (721)
T KOG0482|consen  560 MRRYISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLME  639 (721)
T ss_pred             HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence                   111  2234678889999998776554 2333333467888899988766654 3445556666888888887


Q ss_pred             CCCCcc--cch--------hhHHHHhhccCCCCCCCCCCchHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHh
Q psy4730        1286 MPKFLV--QDL--------PLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILV 1350 (1513)
Q Consensus      1286 ~pkl~~--~d~--------~lf~~li~~~Fp~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~k~~qL~~~~~~ 1350 (1513)
                      ++|..-  +|.        .....++.++...-.    ....-...+.+.|...|+  ++..+.+|++=|..+++
T Consensus       640 ~sK~sL~~~~~~~~~~~~~~~if~iirel~~e~g----~~~v~~s~~~~r~~~kGf--s~~ql~~~i~ey~~lnV  708 (721)
T KOG0482|consen  640 MSKDSLYQDDGQKEDTSATDAIFAIIRELAGEGG----KRCVKLSNAEQRCVRKGF--SEAQLKKCIDEYAELNV  708 (721)
T ss_pred             hhhcccccccccccccchHHHHHHHHHHHHhhcC----CceeeHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCe
Confidence            777422  211        112233444433100    111123455667777777  46778899998887643

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.63  E-value=0.046  Score=69.36  Aligned_cols=45  Identities=11%  Similarity=0.160  Sum_probs=36.0

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ++.||.+++.+. .|.+.+++|+..+.+..++.+++......++..
T Consensus       154 ~v~FILaTtep~-kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~  198 (700)
T PRK12323        154 HVKFILATTDPQ-KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGE  198 (700)
T ss_pred             CceEEEEeCChH-hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHH
Confidence            456777766543 567899999999999999999999888877653

>KOG2004|consensus

Probab=95.62  E-value=0.058  Score=67.57  Aligned_cols=112  Identities=23%  Similarity=0.320  Sum_probs=69.8

Q ss_pred             HhhccCCCCCccCCCCC--hHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCCCCCChhhhccceEeecCCCChHH
Q psy4730         890 ILDDLNMPQKETYGAQP--AVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEAT  967 (1513)
Q Consensus       890 ~~dd~n~p~~~~~~~q~--~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~  967 (1513)
                      ++|++-.-.+..-|...  .||+|--=.+ ..|-|-=--..+.+..+.|||+.|. --.|||-|+-|.-+|-++....+.
T Consensus       510 LiDEvDKlG~g~qGDPasALLElLDPEQN-anFlDHYLdVp~DLSkVLFicTAN~-idtIP~pLlDRMEvIelsGYv~eE  587 (906)
T KOG2004|consen  510 LIDEVDKLGSGHQGDPASALLELLDPEQN-ANFLDHYLDVPVDLSKVLFICTANV-IDTIPPPLLDRMEVIELSGYVAEE  587 (906)
T ss_pred             EeehhhhhCCCCCCChHHHHHHhcChhhc-cchhhhccccccchhheEEEEeccc-cccCChhhhhhhheeeccCccHHH
Confidence            34666655544444332  2444321111 2232222223456667888877765 346999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhc--cchhHHHHHHHHHHHHHHHHH
Q psy4730         968 LSKIFTSVLDWHFSK--GFADSIVKLSKNIVAATFHVY 1003 (1513)
Q Consensus       968 l~~i~~~~l~~~~~~--~f~~~~~~~~~~~~~~~~~~~ 1003 (1513)
                      -.+|-..+|-....+  +..++-.++....+.+.|+-|
T Consensus       588 Kv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~Y  625 (906)
T KOG2004|consen  588 KVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERY  625 (906)
T ss_pred             HHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHH
Confidence            999999987654322  566666666666666666655

>PTZ00111 DNA replication licensing factor MCM4; Provisional

Probab=95.61  E-value=0.039  Score=72.44  Aligned_cols=84  Identities=13%  Similarity=0.185  Sum_probs=53.3

Q ss_pred             HHhhccC-CCCCccCCCCChHHHHHHHHhcCCc-cccCCceeeeecceEEEEeecCC------------CCCCChhhhcc
Q psy4730         889 MILDDLN-MPQKETYGAQPAVELLRQIIDHKHL-YDFQTVTRVDLVDIIYITAMIPT------------MNTITGRLLRH  954 (1513)
Q Consensus       889 ~~~dd~n-~p~~~~~~~q~~le~lr~~~~~~~~-yd~~~~~~~~~~~~~~~~a~~~~------------~~~~~~r~~~~  954 (1513)
                      +++||++ ||...       -..|-++++.+.+ ..+.......-.++.++||+||.            -..+|+.++.|
T Consensus       561 L~IDEidkms~~~-------Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSR  633 (915)
T PTZ00111        561 CCIDELDKCHNES-------RLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTR  633 (915)
T ss_pred             EEecchhhCCHHH-------HHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhh
Confidence            4568888 55422       2334445555433 12222223333489999999994            24799999999


Q ss_pred             ceEe--ecCCCChHHHHHHHHHHhhhh
Q psy4730         955 MNII--SIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       955 f~~~--~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      |-++  .+|.|+.+.=..|-..++..|
T Consensus       634 FDLIf~l~D~~d~~~D~~lA~hI~~~~  660 (915)
T PTZ00111        634 FDLIYLVLDHIDQDTDQLISLSIAKDF  660 (915)
T ss_pred             hcEEEEecCCCChHHHHHHHHHHHHhh
Confidence            9775  578888887666666666543

>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=95.61  E-value=0.054  Score=62.68  Aligned_cols=151  Identities=18%  Similarity=0.289  Sum_probs=87.6

Q ss_pred             HcCccccHHHHHHHHHHHHHHHhcc-eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhc
Q psy4730        1328 KRNAQATDWYIEKIIQVYEMILVRH-GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQL 1406 (1513)
Q Consensus      1328 ~~~l~~~~~~~~k~~qL~~~~~~~~-gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL 1406 (1513)
                      .+++..-++.+..+..+.+++.... -.+|+|.+||||.|+.+ ||..+..             .++..|.   ++  .=
T Consensus         7 ~m~lVlf~~ai~hi~ri~RvL~~~~Gh~LLvG~~GsGr~sl~r-Laa~i~~-------------~~~~~i~---~~--~~   67 (268)
T PF12780_consen    7 KMNLVLFDEAIEHIARISRVLSQPRGHALLVGVGGSGRQSLAR-LAAFICG-------------YEVFQIE---IT--KG   67 (268)
T ss_dssp             -------HHHHHHHHHHHHHHCSTTEEEEEECTTTSCHHHHHH-HHHHHTT-------------EEEE-TT---TS--TT
T ss_pred             ccceeeHHHHHHHHHHHHHHHcCCCCCeEEecCCCccHHHHHH-HHHHHhc-------------cceEEEE---ee--CC
Confidence            3556666777888888888887543 47899999999999988 4444432             2223222   11  11


Q ss_pred             cccccCCCCCCccCHHHHHHHHhhccCCCCc-eEEEEcC-CCChHHHHhhhcccCCCCceeecCCCe-------------
Q psy4730        1407 YGEFDSASHEWRDGILAKTFREMAVSTTPDR-KWIMFDG-PIDAVWIENMNTVLDDNKKLCLINGEI------------- 1471 (1513)
Q Consensus      1407 ~G~~~~~t~eW~DG~l~~~lR~~~~~~~~~~-~WivfDG-~~d~~wiE~LNsvLDdn~~L~L~nGe~------------- 1471 (1513)
                      ||     -.+|.+-+ -++++++.-  .+++ ..++=|. -+|+..+|.+|++|...-.--|=++|.             
T Consensus        68 y~-----~~~f~~dL-k~~~~~ag~--~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~  139 (268)
T PF12780_consen   68 YS-----IKDFKEDL-KKALQKAGI--KGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAK  139 (268)
T ss_dssp             TH-----HHHHHHHH-HHHHHHHHC--S-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHH
T ss_pred             cC-----HHHHHHHH-HHHHHHHhc--cCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHH
Confidence            33     12355443 344554432  2233 4444454 447889999999995432222211110             


Q ss_pred             ----------------eecCCCCeEEEeecCCCC-------CCcchhhccEEEEeeC
Q psy4730        1472 ----------------IKMSNTMNLIFECENLEF-------ASPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1472 ----------------i~~~~~~~~iFE~~~l~~-------asPatvsRcg~v~~~~ 1505 (1513)
                                      =++..|+++++=++....       .-||.+++|.|.|+++
T Consensus       140 ~~~~~~~~~~~~~~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~  196 (268)
T PF12780_consen  140 AEGISDSRESLYEFFIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDP  196 (268)
T ss_dssp             HCT--SSHHHHHHHHHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES
T ss_pred             HcCCCCchHHHHHHHHHHHHhheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCc
Confidence                            024578899988766543       5799999999999985

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=95.59  E-value=0.037  Score=67.96  Aligned_cols=25  Identities=32%  Similarity=0.632  Sum_probs=22.1

Q ss_pred             CccceeccCCCccchHhHHHHHhcc
Q psy4730         729 DVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       729 ~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      ..++||+||||||||++++.+...+
T Consensus       108 ~~~iLl~Gp~GtGKT~lAr~lA~~l  132 (412)
T PRK05342        108 KSNILLIGPTGSGKTLLAQTLARIL  132 (412)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998655

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=95.57  E-value=0.18  Score=64.03  Aligned_cols=46  Identities=24%  Similarity=0.273  Sum_probs=35.0

Q ss_pred             cccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhc
Q psy4730         707 DLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLN  752 (1513)
Q Consensus       707 ~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~  752 (1513)
                      +++-......+....+..+-..+.|||+.|++||||+.+++..-..
T Consensus       220 ~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~  265 (538)
T PRK15424        220 DLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHRE  265 (538)
T ss_pred             heeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHh
Confidence            3433334445566667777889999999999999999999987654

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=95.57  E-value=0.023  Score=67.93  Aligned_cols=139  Identities=18%  Similarity=0.242  Sum_probs=83.0

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhc---ccccc---------------cceeE-EEecCCCCC--hhhc---
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKS---ATMKE---------------FKTGY-KIINPKSIT--MGQL--- 1406 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~---~~~~~---------------~~~~~-~~inp~~~t--~~eL--- 1406 (1513)
                      ..-|+||||||.||||.+--||.-+..+.+...   .+++.               -.+.+ .+..|+.+.  +..|   
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            668899999999999999999888774433221   11110               01111 223444333  1111   


Q ss_pred             -cccccCCCCCCccCHHHHHHHHhhccCCCCceEEEEcCCCC--------------------------hHHHHhhhcccC
Q psy4730        1407 -YGEFDSASHEWRDGILAKTFREMAVSTTPDRKWIMFDGPID--------------------------AVWIENMNTVLD 1459 (1513)
Q Consensus      1407 -~G~~~~~t~eW~DG~l~~~lR~~~~~~~~~~~WivfDG~~d--------------------------~~wiE~LNsvLD 1459 (1513)
                       .=-+|..++...|+....=|+...+...+....+|++.-.-                          +.-+=++=+++-
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~TKlDET~s~G~~~s~~~  362 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIFTKLDETTSLGNLFSLMY  362 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcceeEEEcccccCchhHHHHHHH
Confidence             01256677889999888888887665555666666663221                          111223333332


Q ss_pred             C-C-CceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEE
Q psy4730        1460 D-N-KKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGM 1500 (1513)
Q Consensus      1460 d-n-~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~ 1500 (1513)
                      . + +..++++|++|+           +|+..|+|-.+-||..
T Consensus       363 e~~~PV~YvT~GQ~VP-----------eDI~va~~~~Lv~~~~  394 (407)
T COG1419         363 ETRLPVSYVTNGQRVP-----------EDIVVANPDYLVRRIL  394 (407)
T ss_pred             HhCCCeEEEeCCCCCC-----------chhhhcChHHHHHHHh
Confidence            2 2 677888999886           5677888887777754

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=95.57  E-value=0.014  Score=63.88  Aligned_cols=25  Identities=20%  Similarity=0.339  Sum_probs=22.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|+++|+|||||||+.+.|++.++
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~~~g   28 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVEKYG   28 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4688999999999999999998764

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PTZ00088 adenylate kinase 1; Provisional

Probab=95.57  E-value=0.014  Score=66.05  Aligned_cols=23  Identities=22%  Similarity=0.234  Sum_probs=21.8

Q ss_pred             EEEeccCCCCchHHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      |+|+|||||||||..+.|++.++
T Consensus         9 Ivl~G~PGsGK~T~a~~La~~~g   31 (229)
T PTZ00088          9 IVLFGAPGVGKGTFAEILSKKEN   31 (229)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            89999999999999999998875

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=95.57  E-value=0.46  Score=61.25  Aligned_cols=45  Identities=9%  Similarity=0.151  Sum_probs=34.6

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+.||.+++..++ +.+-+.+|+..+.+..|+.+.+......++..
T Consensus       162 ~~~fIl~tte~~k-ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~k  206 (598)
T PRK09111        162 HVKFIFATTEIRK-VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAK  206 (598)
T ss_pred             CeEEEEEeCChhh-hhHHHHhheeEEEecCCCHHHHHHHHHHHHHH
Confidence            3455555544433 67779999999999999999999999888653

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=95.55  E-value=0.28  Score=62.50  Aligned_cols=57  Identities=16%  Similarity=0.165  Sum_probs=39.4

Q ss_pred             hhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeecccccc
Q psy4730         713 NVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSART  769 (1513)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t  769 (1513)
                      ....+....+..+-..+.|||+.|++||||+.++..+-........-...++++...
T Consensus       194 ~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~  250 (509)
T PRK05022        194 PAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALP  250 (509)
T ss_pred             HHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCC
Confidence            344455566777788999999999999999999998876543222223355555443

>KOG0727|consensus

Probab=95.53  E-value=0.028  Score=61.69  Aligned_cols=27  Identities=22%  Similarity=0.460  Sum_probs=23.4

Q ss_pred             hcCCccceeccCCCccchHhHHHHHhc
Q psy4730         726 LQNDVPMMFVGPTGTGKSTIVLNLLLN  752 (1513)
Q Consensus       726 ~~~~~~~ll~G~~g~GKt~~v~~~~~~  752 (1513)
                      ++.-+-||+.||||||||++++....+
T Consensus       186 idpprgvllygppg~gktml~kava~~  212 (408)
T KOG0727|consen  186 IDPPRGVLLYGPPGTGKTMLAKAVANH  212 (408)
T ss_pred             CCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence            566678999999999999999988753

>KOG0742|consensus

Probab=95.53  E-value=0.2  Score=58.92  Aligned_cols=82  Identities=13%  Similarity=0.124  Sum_probs=54.4

Q ss_pred             ccchHHHHHHhcCEEEEEEcCCC--------------------CCCCCCCCCccccccchhhhhHHHHHHHH--hc----
Q psy4730         674 TETSKDLAKAVAKQCIVFNCSDR--------------------PTFPPNLRPSDLIIPTNVTCMQNFFINLY--LQ----  727 (1513)
Q Consensus       674 te~vk~La~~lG~~~~v~ncs~~--------------------~~f~~~~~~~~~~v~t~~~~~~~~~~~~~--~~----  727 (1513)
                      ..+-+++-..||+|-.+--.|-.                    +.-.+...+.+++++..-..|...+-..-  .+    
T Consensus       303 ~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls~~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~a  382 (630)
T KOG0742|consen  303 LVTWRYIERRLGQPSLIRESSRGRFPWIGSLSALKHPIQGSRSASSRGKDPLEGVILHPSLEKRIEDLAIATANTKKHQA  382 (630)
T ss_pred             hhHHHHHHHHcCCchhhhhhccccCCCcccHHHHhchhhhhHhhhhcCCCCcCCeecCHHHHHHHHHHHHHhcccccccc
Confidence            34567777888887655443321                    01122345788888887777777654432  12    


Q ss_pred             CCccceeccCCCccchHhHHHHHhccCc
Q psy4730         728 NDVPMMFVGPTGTGKSTIVLNLLLNLSK  755 (1513)
Q Consensus       728 ~~~~~ll~G~~g~GKt~~v~~~~~~~~~  755 (1513)
                      .-+++||.||||||||+....+.++..-
T Consensus       383 pfRNilfyGPPGTGKTm~ArelAr~SGl  410 (630)
T KOG0742|consen  383 PFRNILFYGPPGTGKTMFARELARHSGL  410 (630)
T ss_pred             hhhheeeeCCCCCCchHHHHHHHhhcCC
Confidence            2248999999999999999999887543

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=95.52  E-value=0.092  Score=63.60  Aligned_cols=39  Identities=21%  Similarity=0.384  Sum_probs=31.4

Q ss_pred             EEEeecCC--CCCCChhhhccce---EeecCCCChHHHHHHHHH
Q psy4730         936 YITAMIPT--MNTITGRLLRHMN---IISIDSFNEATLSKIFTS  974 (1513)
Q Consensus       936 ~~~a~~~~--~~~~~~r~~~~f~---~~~~~~~~~~~l~~i~~~  974 (1513)
                      +++|-.||  .+.+.|||.+||.   ++-+.+|+.++...|...
T Consensus       212 vltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~k  255 (408)
T COG0593         212 VLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRK  255 (408)
T ss_pred             EEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHH
Confidence            34555566  5678899999996   488999999999988887

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=95.51  E-value=0.13  Score=61.67  Aligned_cols=80  Identities=11%  Similarity=0.244  Sum_probs=54.1

Q ss_pred             HHhhccCCCCCccCCCCChHHHHHHHHhcCC-ccccCCceeeeecceEEEEeecCCCCCCChhhhccceE-eecCCCCh-
Q psy4730         889 MILDDLNMPQKETYGAQPAVELLRQIIDHKH-LYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNI-ISIDSFNE-  965 (1513)
Q Consensus       889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~-~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~-~~~~~~~~-  965 (1513)
                      +|+||+|.-..      .....|-++++.|. -+.+.......-..+.++|++||....+++.++.||.+ +.+++|+. 
T Consensus       135 L~lDEi~~L~~------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~  208 (337)
T TIGR02030       135 LYIDEVNLLED------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDV  208 (337)
T ss_pred             EEecChHhCCH------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCH
Confidence            56799995432      24455556666553 24443333333347889999998877899999999998 78899976 


Q ss_pred             HHHHHHHHH
Q psy4730         966 ATLSKIFTS  974 (1513)
Q Consensus       966 ~~l~~i~~~  974 (1513)
                      +.-..|...
T Consensus       209 eer~eIL~~  217 (337)
T TIGR02030       209 ELRVEIVER  217 (337)
T ss_pred             HHHHHHHHh
Confidence            555566555

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>PRK14526 adenylate kinase; Provisional

Probab=95.51  E-value=0.026  Score=63.08  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=21.0

Q ss_pred             EEEeccCCCCchHHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ++|+|||||||||..+.|++.++
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~~   25 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNELN   25 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999998764

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.48  E-value=0.013  Score=66.80  Aligned_cols=58  Identities=28%  Similarity=0.394  Sum_probs=45.3

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
                      ..-|+|+||||||||-+.++||+.++              |.+.+-+.-++|-.-+.|       |=.+-++.+++..+
T Consensus        97 KSNILLiGPTGsGKTlLAqTLAk~Ln--------------VPFaiADATtLTEAGYVG-------EDVENillkLlqaa  154 (408)
T COG1219          97 KSNILLIGPTGSGKTLLAQTLAKILN--------------VPFAIADATTLTEAGYVG-------EDVENILLKLLQAA  154 (408)
T ss_pred             eccEEEECCCCCcHHHHHHHHHHHhC--------------CCeeeccccchhhccccc-------hhHHHHHHHHHHHc
Confidence            45899999999999999999999986              566666777777665555       33456788887765

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=95.48  E-value=0.088  Score=67.78  Aligned_cols=68  Identities=10%  Similarity=0.249  Sum_probs=45.8

Q ss_pred             hhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHH
Q psy4730         891 LDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSK  970 (1513)
Q Consensus       891 ~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~  970 (1513)
                      ||+..+-..+     ..-.||+-+-+.             -..+.||.+++.+. .|++-+++|+..+.+.+++.+.+..
T Consensus       125 IDEah~Ls~~-----a~NALLKtLEEP-------------p~~v~FIL~Tt~~~-kLl~TI~SRC~~~~f~~Ls~~ei~~  185 (647)
T PRK07994        125 IDEVHMLSRH-----SFNALLKTLEEP-------------PEHVKFLLATTDPQ-KLPVTILSRCLQFHLKALDVEQIRQ  185 (647)
T ss_pred             EechHhCCHH-----HHHHHHHHHHcC-------------CCCeEEEEecCCcc-ccchHHHhhheEeeCCCCCHHHHHH
Confidence            4777755432     234566655542             12345666655433 5788899999999999999999988


Q ss_pred             HHHHHhh
Q psy4730         971 IFTSVLD  977 (1513)
Q Consensus       971 i~~~~l~  977 (1513)
                      ....++.
T Consensus       186 ~L~~il~  192 (647)
T PRK07994        186 QLEHILQ  192 (647)
T ss_pred             HHHHHHH
Confidence            8877764

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=95.48  E-value=0.0092  Score=68.69  Aligned_cols=24  Identities=29%  Similarity=0.404  Sum_probs=22.1

Q ss_pred             EEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      |+++|.|||||||+.+.|++.+..
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~~   25 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLSE   25 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHH
Confidence            789999999999999999988863

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>KOG0989|consensus

Probab=95.42  E-value=0.011  Score=67.14  Aligned_cols=56  Identities=23%  Similarity=0.272  Sum_probs=40.8

Q ss_pred             CceEEEEcC-CC--ChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeC
Q psy4730        1436 DRKWIMFDG-PI--DAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1436 ~~~WivfDG-~~--d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
                      -.+-||||. +.  ...| -+|-.++|+-             +.+++|+|=+..++..-+..+|||.=..|.+
T Consensus       129 ~fKiiIlDEcdsmtsdaq-~aLrr~mE~~-------------s~~trFiLIcnylsrii~pi~SRC~KfrFk~  187 (346)
T KOG0989|consen  129 PFKIIILDECDSMTSDAQ-AALRRTMEDF-------------SRTTRFILICNYLSRIIRPLVSRCQKFRFKK  187 (346)
T ss_pred             cceEEEEechhhhhHHHH-HHHHHHHhcc-------------ccceEEEEEcCChhhCChHHHhhHHHhcCCC
Confidence            348999994 22  2224 3455555542             4578999999999999999999999877765

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=95.42  E-value=0.16  Score=63.99  Aligned_cols=44  Identities=9%  Similarity=0.227  Sum_probs=35.4

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLD  977 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~  977 (1513)
                      .+.||.+++.+ ..|++-+.+|...+.+.+++.+++......++.
T Consensus       147 ~t~FIL~ttd~-~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~  190 (535)
T PRK08451        147 YVKFILATTDP-LKLPATILSRTQHFRFKQIPQNSIISHLKTILE  190 (535)
T ss_pred             ceEEEEEECCh-hhCchHHHhhceeEEcCCCCHHHHHHHHHHHHH
Confidence            35566666555 778899999999999999999998888777654

>TIGR01351 adk adenylate kinases

Probab=95.40  E-value=0.024  Score=63.51  Aligned_cols=23  Identities=26%  Similarity=0.406  Sum_probs=21.0

Q ss_pred             EEEeccCCCCchHHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      |+|+|||||||||..+.|++.++
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g   24 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYG   24 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            78999999999999999998764

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=95.40  E-value=0.09  Score=59.08  Aligned_cols=31  Identities=29%  Similarity=0.430  Sum_probs=26.0

Q ss_pred             CCccceeccCCCccchHhHHHHHhccCcCcc
Q psy4730         728 NDVPMMFVGPTGTGKSTIVLNLLLNLSKDKY  758 (1513)
Q Consensus       728 ~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~  758 (1513)
                      ...+|||.|+.|||||++|+.++.....+..
T Consensus        51 pannvLL~G~rGtGKSSlVkall~~y~~~GL   81 (249)
T PF05673_consen   51 PANNVLLWGARGTGKSSLVKALLNEYADQGL   81 (249)
T ss_pred             CCcceEEecCCCCCHHHHHHHHHHHHhhcCc
Confidence            4568999999999999999999987655543

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=95.40  E-value=0.13  Score=67.49  Aligned_cols=40  Identities=15%  Similarity=0.203  Sum_probs=32.3

Q ss_pred             hhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhcc
Q psy4730         714 VTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       714 ~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      ...+.......+...+.|||+.|++||||+++++..-...
T Consensus       333 ~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s  372 (638)
T PRK11388        333 QMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES  372 (638)
T ss_pred             HHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence            3445556677778899999999999999999999886654

>PRK05818 DNA polymerase III subunit delta'; Validated

Probab=95.38  E-value=0.049  Score=61.96  Aligned_cols=129  Identities=14%  Similarity=0.065  Sum_probs=84.4

Q ss_pred             HHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhccccc---------ccceeEEEecCCCCChhhccccccCCCCCCc
Q psy4730        1348 ILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMK---------EFKTGYKIINPKSITMGQLYGEFDSASHEWR 1418 (1513)
Q Consensus      1348 ~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~---------~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~ 1418 (1513)
                      ....|+.+++||.|+||..+...+|+++.=.. ...+++.         ....+++.+.|..-+                
T Consensus         4 ~~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~-~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~----------------   66 (261)
T PRK05818          4 KNKTHPLLLIERKGSFLKPFLYEYLTSIVCTK-ANGFCKTCESCLKILNGKYNDFYLIFDQKNP----------------   66 (261)
T ss_pred             CCCCcceeeeCCCCCcHHHHHHHHHHHHcCCC-CCCCCCCCHHHHHHhcCCCCCEEEecCCccc----------------
Confidence            34579999999999999999999998874221 1112221         234556666665421                


Q ss_pred             cCHHHHHHHHh----hccC--CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCc
Q psy4730        1419 DGILAKTFREM----AVST--TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASP 1492 (1513)
Q Consensus      1419 DG~l~~~lR~~----~~~~--~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asP 1492 (1513)
                        +-..-+|+.    ....  ....+.+|+|+ +|-.=.++-|++|   |.|     |  ..|+++-+|+-+++....-|
T Consensus        67 --I~id~ir~l~~~l~~~s~e~~~~KV~II~~-ae~m~~~AaNaLL---K~L-----E--EPp~~t~fiLit~~~~~lLp  133 (261)
T PRK05818         67 --IKKEDALSIINKLNRPSVESNGKKIYIIYG-IEKLNKQSANSLL---KLI-----E--EPPKNTYGIFTTRNENNILN  133 (261)
T ss_pred             --CCHHHHHHHHHHHccCchhcCCCEEEEecc-HhhhCHHHHHHHH---Hhh-----c--CCCCCeEEEEEECChHhCch
Confidence              113333443    2222  23578888886 3333346667776   111     1  14889999999999999999


Q ss_pred             chhhccEEEEeeCC
Q psy4730        1493 ATVSRVGMIYFELK 1506 (1513)
Q Consensus      1493 atvsRcg~v~~~~~ 1506 (1513)
                      .-+|||-.+.+.+.
T Consensus       134 TI~SRCq~~~~~~~  147 (261)
T PRK05818        134 TILSRCVQYVVLSK  147 (261)
T ss_pred             HhhhheeeeecCCh
Confidence            99999999988653

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.38  E-value=0.11  Score=66.24  Aligned_cols=44  Identities=11%  Similarity=0.203  Sum_probs=33.6

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLD  977 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~  977 (1513)
                      .+.||.+++.+++ +++.+++|...+.+..++.+.+......++.
T Consensus       149 ~~~fIL~t~d~~k-il~tI~SRc~~~~f~~l~~~~i~~~L~~il~  192 (527)
T PRK14969        149 HVKFILATTDPQK-IPVTVLSRCLQFNLKQMPPPLIVSHLQHILE  192 (527)
T ss_pred             CEEEEEEeCChhh-CchhHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            4566766655543 4555999999999999999998887777764

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=95.36  E-value=0.037  Score=62.52  Aligned_cols=82  Identities=17%  Similarity=0.232  Sum_probs=55.6

Q ss_pred             HHHhhccCCCCCccCCCCChHHHHHHHHhcCCcc-----ccC-CceeeeecceEEEEeecCCCCCCChhhhccceE-eec
Q psy4730         888 EMILDDLNMPQKETYGAQPAVELLRQIIDHKHLY-----DFQ-TVTRVDLVDIIYITAMIPTMNTITGRLLRHMNI-ISI  960 (1513)
Q Consensus       888 ~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~y-----d~~-~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~-~~~  960 (1513)
                      .+|+|+++--.      ..+-|.|--.+|..-.-     .++ ..-.+.+--+++|||+--. ..++.-|..||-+ ..+
T Consensus       106 VLFIDEIHrl~------~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~-G~lt~PLrdRFGi~~rl  178 (332)
T COG2255         106 VLFIDEIHRLS------PAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRA-GMLTNPLRDRFGIIQRL  178 (332)
T ss_pred             eEEEehhhhcC------hhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecccc-ccccchhHHhcCCeeee
Confidence            45679998222      13568888777753221     222 3345666688888876533 3477778889987 679


Q ss_pred             CCCChHHHHHHHHHHh
Q psy4730         961 DSFNEATLSKIFTSVL  976 (1513)
Q Consensus       961 ~~~~~~~l~~i~~~~l  976 (1513)
                      ++.+.++|..|....-
T Consensus       179 efY~~~eL~~Iv~r~a  194 (332)
T COG2255         179 EFYTVEELEEIVKRSA  194 (332)
T ss_pred             ecCCHHHHHHHHHHHH
Confidence            9999999999988643

>PRK06893 DNA replication initiation factor; Validated

Probab=95.35  E-value=0.039  Score=62.60  Aligned_cols=27  Identities=11%  Similarity=0.156  Sum_probs=22.9

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      ++.++|+||||||||.+.++++..+..
T Consensus        39 ~~~l~l~G~~G~GKThL~~ai~~~~~~   65 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSNHYLL   65 (229)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            345799999999999999999987643

>PF13173 AAA_14: AAA domain

Probab=95.33  E-value=0.031  Score=57.25  Aligned_cols=85  Identities=26%  Similarity=0.343  Sum_probs=51.8

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
                      +..++|.||.||||||+++-+++.+.  .          +.++..+|-......   +..+      .|  +...+++..
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~--~----------~~~~~yi~~~~~~~~---~~~~------~~--~~~~~~~~~   58 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL--P----------PENILYINFDDPRDR---RLAD------PD--LLEYFLELI   58 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc--c----------cccceeeccCCHHHH---HHhh------hh--hHHHHHHhh
Confidence            56899999999999999998886654  0          012333332222111   1001      01  334444431


Q ss_pred             ccCCCCceEEEEcC-CCChHHHHhhhcccCCC
Q psy4730        1431 VSTTPDRKWIMFDG-PIDAVWIENMNTVLDDN 1461 (1513)
Q Consensus      1431 ~~~~~~~~WivfDG-~~d~~wiE~LNsvLDdn 1461 (1513)
                         .....+|++|. .--|.|.+.++.+.|+.
T Consensus        59 ---~~~~~~i~iDEiq~~~~~~~~lk~l~d~~   87 (128)
T PF13173_consen   59 ---KPGKKYIFIDEIQYLPDWEDALKFLVDNG   87 (128)
T ss_pred             ---ccCCcEEEEehhhhhccHHHHHHHHHHhc
Confidence               12568999993 34478999999999854

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=95.32  E-value=0.036  Score=68.01  Aligned_cols=26  Identities=23%  Similarity=0.328  Sum_probs=23.2

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..||+|+||||||||++.+.++..++
T Consensus       165 p~gvLL~GppGtGKT~lAkaia~~~~  190 (389)
T PRK03992        165 PKGVLLYGPPGTGKTLLAKAVAHETN  190 (389)
T ss_pred             CCceEEECCCCCChHHHHHHHHHHhC
Confidence            46899999999999999999987764

>PRK06217 hypothetical protein; Validated

Probab=95.32  E-value=0.015  Score=63.55  Aligned_cols=24  Identities=33%  Similarity=0.382  Sum_probs=21.8

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|+|.|.|||||||+.+.|++.++
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~   26 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLD   26 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            389999999999999999998775

>PRK07261 topology modulation protein; Provisional

Probab=95.30  E-value=0.026  Score=61.01  Aligned_cols=23  Identities=26%  Similarity=0.406  Sum_probs=20.6

Q ss_pred             EEEeccCCCCchHHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      |+|+|+|||||||+.+.|++.++
T Consensus         3 i~i~G~~GsGKSTla~~l~~~~~   25 (171)
T PRK07261          3 IAIIGYSGSGKSTLARKLSQHYN   25 (171)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999987653

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=95.30  E-value=0.054  Score=64.87  Aligned_cols=124  Identities=15%  Similarity=0.226  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccc
Q psy4730        1335 DWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEF 1410 (1513)
Q Consensus      1335 ~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~ 1410 (1513)
                      +.+..-+-++..+.....+|+|+|++||||+++.+.+...-.+           ....+..+|+..++    -.+|||.-
T Consensus        13 ~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r-----------~~~pfv~v~c~~~~~~~~~~~lfg~~   81 (326)
T PRK11608         13 NSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSR-----------WQGPFISLNCAALNENLLDSELFGHE   81 (326)
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCc-----------cCCCeEEEeCCCCCHHHHHHHHcccc
Confidence            3444444556666778889999999999999999988754321           01356788988887    45788843


Q ss_pred             cCCCCCCc------cCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEE
Q psy4730        1411 DSASHEWR------DGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIF 1482 (1513)
Q Consensus      1411 ~~~t~eW~------DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iF 1482 (1513)
                      .   ..|.      -|.+    ..+      ..-=+++|  +.+++..-+.|-.+|++.....+  |..-..+.++|+|+
T Consensus        82 ~---~~~~g~~~~~~g~l----~~a------~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~--g~~~~~~~~~RiI~  146 (326)
T PRK11608         82 A---GAFTGAQKRHPGRF----ERA------DGGTLFLDELATAPMLVQEKLLRVIEYGELERV--GGSQPLQVNVRLVC  146 (326)
T ss_pred             c---cccCCcccccCCch----hcc------CCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeC--CCCceeeccEEEEE
Confidence            1   1111      2333    111      11347778  56788888899999988764444  33335566899999


Q ss_pred             ee
Q psy4730        1483 EC 1484 (1513)
Q Consensus      1483 E~ 1484 (1513)
                      -+
T Consensus       147 ~s  148 (326)
T PRK11608        147 AT  148 (326)
T ss_pred             eC
Confidence            65

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.29  E-value=0.15  Score=64.36  Aligned_cols=45  Identities=13%  Similarity=0.261  Sum_probs=35.2

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+.+|.+++. ...+++.+.+|+..+.+.+|+.+++......++..
T Consensus       146 ~t~~Il~t~~-~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~  190 (504)
T PRK14963        146 HVIFILATTE-PEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEA  190 (504)
T ss_pred             CEEEEEEcCC-hhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHH
Confidence            3455555543 35788899999999999999999999888887653

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=95.22  E-value=0.05  Score=69.27  Aligned_cols=119  Identities=13%  Similarity=0.174  Sum_probs=79.1

Q ss_pred             HHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCCC---C
Q psy4730        1343 QVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSAS---H 1415 (1513)
Q Consensus      1343 qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~t---~ 1415 (1513)
                      ++-.+.....+|+|.|++||||+++.+.+.....+-           ...+..+|+.+++    -.+|||.-...-   .
T Consensus       202 ~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~-----------~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~  270 (509)
T PRK05022        202 EIEVVAASDLNVLILGETGVGKELVARAIHAASPRA-----------DKPLVYLNCAALPESLAESELFGHVKGAFTGAI  270 (509)
T ss_pred             HHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcC-----------CCCeEEEEcccCChHHHHHHhcCccccccCCCc
Confidence            344455677899999999999999999997654321           2356788988886    357899532110   0


Q ss_pred             CCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEee
Q psy4730        1416 EWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC 1484 (1513)
Q Consensus      1416 eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~ 1484 (1513)
                      .-.-|.+.    .+      ..-.+++|  +.+++..-..|-.+|++...-.+.+..  ..+.++|+|+-+
T Consensus       271 ~~~~g~~~----~a------~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~--~~~~~~RiI~~t  329 (509)
T PRK05022        271 SNRSGKFE----LA------DGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDR--SLRVDVRVIAAT  329 (509)
T ss_pred             ccCCcchh----hc------CCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCc--ceecceEEEEec
Confidence            11233332    11      22568899  678888888898999877654443333  445678999977

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=95.21  E-value=0.53  Score=60.16  Aligned_cols=65  Identities=18%  Similarity=0.139  Sum_probs=40.0

Q ss_pred             CccccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeecccccc
Q psy4730         705 PSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSART  769 (1513)
Q Consensus       705 ~~~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t  769 (1513)
                      |.+++-......+....++.+-..+.|||+.|++||||+++++.+-.......--...++++...
T Consensus       203 f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~  267 (520)
T PRK10820        203 FSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP  267 (520)
T ss_pred             ccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence            33444333334445556666777899999999999999999998644332211112345555443

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=95.20  E-value=0.14  Score=66.43  Aligned_cols=43  Identities=16%  Similarity=0.319  Sum_probs=33.9

Q ss_pred             eEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhh
Q psy4730         934 IIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLD  977 (1513)
Q Consensus       934 ~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~  977 (1513)
                      +.||.++.. ...|++.+++|+..+.+.+|+.+.+......++.
T Consensus       149 tifILaTte-~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~  191 (725)
T PRK07133        149 VIFILATTE-VHKIPLTILSRVQRFNFRRISEDEIVSRLEFILE  191 (725)
T ss_pred             eEEEEEcCC-hhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHH
Confidence            455555533 3478889999999999999999999988887654

>KOG0991|consensus

Probab=95.20  E-value=0.037  Score=60.38  Aligned_cols=30  Identities=40%  Similarity=0.638  Sum_probs=24.6

Q ss_pred             cceeccCCCccchHhHHHHHhccCcCcccc
Q psy4730         731 PMMFVGPTGTGKSTIVLNLLLNLSKDKYLP  760 (1513)
Q Consensus       731 ~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~  760 (1513)
                      ++++.||||+|||+.+..+++.+-.+.|..
T Consensus        50 ~liisGpPG~GKTTsi~~LAr~LLG~~~ke   79 (333)
T KOG0991|consen   50 NLIISGPPGTGKTTSILCLARELLGDSYKE   79 (333)
T ss_pred             ceEeeCCCCCchhhHHHHHHHHHhChhhhh
Confidence            566899999999999999998876655543

>PRK08181 transposase; Validated

Probab=95.20  E-value=0.046  Score=63.26  Aligned_cols=30  Identities=30%  Similarity=0.585  Sum_probs=25.5

Q ss_pred             HHhcCCccceeccCCCccchHhHHHHHhcc
Q psy4730         724 LYLQNDVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       724 ~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      .++..+.+++|+||+|||||.+...+...+
T Consensus       101 ~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a  130 (269)
T PRK08181        101 SWLAKGANLLLFGPPGGGKSHLAAAIGLAL  130 (269)
T ss_pred             HHHhcCceEEEEecCCCcHHHHHHHHHHHH
Confidence            467788999999999999999999876543

>PRK09862 putative ATP-dependent protease; Provisional

Probab=95.17  E-value=0.046  Score=68.48  Aligned_cols=144  Identities=13%  Similarity=0.137  Sum_probs=94.4

Q ss_pred             HHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhccc-------------ccccceeEEEecCCCCChhhccccccCCC
Q psy4730        1348 ILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSAT-------------MKEFKTGYKIINPKSITMGQLYGEFDSAS 1414 (1513)
Q Consensus      1348 ~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~-------------~~~~~~~~~~inp~~~t~~eL~G~~~~~t 1414 (1513)
                      ....|.++|+||+|||||++.+.+...+....+....+             .......-++--+++.|...|+|.-    
T Consensus       207 a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg----  282 (506)
T PRK09862        207 AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGG----  282 (506)
T ss_pred             ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCC----
Confidence            34578899999999999999999986654332211000             0000112344455666777788841    


Q ss_pred             CCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCC-----
Q psy4730        1415 HEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL----- 1487 (1513)
Q Consensus      1415 ~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l----- 1487 (1513)
                      ....-|.++.+          +.-.+++|  ...++..++.|..+|++...-.-..|..+..|.++++|--+..-     
T Consensus       283 ~~~~pG~l~~A----------~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~  352 (506)
T PRK09862        283 AIPGPGEISLA----------HNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHY  352 (506)
T ss_pred             ceehhhHhhhc----------cCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceec
Confidence            12344555432          23678889  45688899999999988876555667778889999888776432     


Q ss_pred             ----------------CCCCcchhhccEE-EEeeC
Q psy4730        1488 ----------------EFASPATVSRVGM-IYFEL 1505 (1513)
Q Consensus      1488 ----------------~~asPatvsRcg~-v~~~~ 1505 (1513)
                                      ...|++...|+.| |.+++
T Consensus       353 ~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~  387 (506)
T PRK09862        353 QGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPL  387 (506)
T ss_pred             CCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCC
Confidence                            2467788889888 34443

>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]

Probab=95.16  E-value=0.036  Score=68.07  Aligned_cols=121  Identities=14%  Similarity=0.163  Sum_probs=89.2

Q ss_pred             HHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCCCCCCc
Q psy4730        1343 QVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSASHEWR 1418 (1513)
Q Consensus      1343 qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~t~eW~ 1418 (1513)
                      .....-.+...|+|+|+||+||.-+.+....+-.+    .       ...+..||+.|++    -+||||+-        
T Consensus       260 ~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R----~-------~~PFIaiNCaAiPe~LlESELFGye--------  320 (560)
T COG3829         260 LAKRIAKTDSTVLILGESGTGKELFARAIHNLSPR----A-------NGPFIAINCAAIPETLLESELFGYE--------  320 (560)
T ss_pred             HHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcc----c-------CCCeEEEecccCCHHHHHHHHhCcC--------
Confidence            34444556779999999999998877776554433    1       2457889999999    68999963        


Q ss_pred             cCHHHHHHHHhhcc--CCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEee
Q psy4730        1419 DGILAKTFREMAVS--TTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC 1484 (1513)
Q Consensus      1419 DG~l~~~lR~~~~~--~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~ 1484 (1513)
                      .|.||=+.|.+...  +....-=|.+|  |.++..-=--|=+||-+....-+.+.+-++.  .+|+|-.|
T Consensus       321 ~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~v--DVRIIAAT  388 (560)
T COG3829         321 KGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPV--DVRIIAAT  388 (560)
T ss_pred             CccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceee--EEEEEecc
Confidence            57888887754221  12233567889  8898887888899999999999977776665  48888766

>PRK14527 adenylate kinase; Provisional

Probab=95.16  E-value=0.034  Score=61.20  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=22.3

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|+++|||||||||..+.|++.++
T Consensus         7 ~~i~i~G~pGsGKsT~a~~La~~~~   31 (191)
T PRK14527          7 KVVIFLGPPGAGKGTQAERLAQELG   31 (191)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3589999999999999999987765

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=95.15  E-value=0.12  Score=62.66  Aligned_cols=45  Identities=13%  Similarity=0.273  Sum_probs=34.6

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ++.+|.+++.+ ..+.+.+.+|+..+.+.+|+.+.+..+...++..
T Consensus       147 ~~~lIl~~~~~-~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~  191 (355)
T TIGR02397       147 HVVFILATTEP-HKIPATILSRCQRFDFKRIPLEDIVERLKKILDK  191 (355)
T ss_pred             ceeEEEEeCCH-HHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHH
Confidence            45555555443 3567889999999999999999999888887654

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>KOG0731|consensus

Probab=95.11  E-value=0.043  Score=70.39  Aligned_cols=38  Identities=29%  Similarity=0.286  Sum_probs=31.2

Q ss_pred             cCCCCCCCCCCCCccchHHHHHHhcCEEEEEEcCCCCC
Q psy4730         661 LGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPT  698 (1513)
Q Consensus       661 ~g~~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~~~  698 (1513)
                      .|..+.||+|||||-++|+.|.-.|.|++..+-|+-++
T Consensus       345 kGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE  382 (774)
T KOG0731|consen  345 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE  382 (774)
T ss_pred             CceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence            45677899999999999999999999977777665544

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=95.11  E-value=0.058  Score=68.81  Aligned_cols=118  Identities=16%  Similarity=0.222  Sum_probs=76.7

Q ss_pred             HHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCCh----hhccccccC---CCCC
Q psy4730        1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITM----GQLYGEFDS---ASHE 1416 (1513)
Q Consensus      1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~----~eL~G~~~~---~t~e 1416 (1513)
                      +..+.....+|+|.|++||||+.+.+.+..+..+           ....+..+|+.+++-    .+|||+-..   ...+
T Consensus       220 ~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r-----------~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~  288 (520)
T PRK10820        220 ARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPR-----------GKKPFLALNCASIPDDVVESELFGHAPGAYPNALE  288 (520)
T ss_pred             HHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCC-----------CCCCeEEeccccCCHHHHHHHhcCCCCCCcCCccc
Confidence            3344556789999999999999999987654321           013467899988873    578985421   1123


Q ss_pred             CccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEee
Q psy4730        1417 WRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC 1484 (1513)
Q Consensus      1417 W~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~ 1484 (1513)
                      ...|+|..+          ..-=+++|  +.+++.--..|-.+|.+...-.+  |+.-..+.++|+|+-+
T Consensus       289 ~~~g~~e~a----------~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~vRiI~st  346 (520)
T PRK10820        289 GKKGFFEQA----------NGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRV--GEDHEVHVDVRVICAT  346 (520)
T ss_pred             CCCChhhhc----------CCCEEEEeChhhCCHHHHHHHHHHHhcCCcccC--CCCcceeeeeEEEEec
Confidence            456665421          11347888  56778777788888877654333  4444446678999865

>PRK08233 hypothetical protein; Provisional

Probab=95.10  E-value=0.021  Score=62.12  Aligned_cols=25  Identities=32%  Similarity=0.349  Sum_probs=21.8

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|.|.|+|||||||+.+.|++.+.
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3577889999999999999998875

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=95.01  E-value=0.099  Score=67.81  Aligned_cols=46  Identities=13%  Similarity=0.154  Sum_probs=38.5

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ++.+++|+......+++.+.+||..+.+++++.+++..|+...+..
T Consensus       323 ~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~  368 (615)
T TIGR02903       323 DFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEK  368 (615)
T ss_pred             eEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHH
Confidence            5777777766555789999999999999999999999999987653

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=95.00  E-value=1  Score=60.09  Aligned_cols=45  Identities=7%  Similarity=0.093  Sum_probs=34.5

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+.||.+++.+. .|.+-+.+|..++.+..++.++|......++..
T Consensus       150 ~~~fIl~tt~~~-kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~  194 (824)
T PRK07764        150 HLKFIFATTEPD-KVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ  194 (824)
T ss_pred             CeEEEEEeCChh-hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH
Confidence            455666664432 377889999999999999999999888887643

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=95.00  E-value=0.021  Score=61.37  Aligned_cols=25  Identities=32%  Similarity=0.344  Sum_probs=23.3

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      -|++.|+|||||||..+-|++++..
T Consensus         3 LiIlTGyPgsGKTtfakeLak~L~~   27 (261)
T COG4088           3 LIILTGYPGSGKTTFAKELAKELRQ   27 (261)
T ss_pred             eEEEecCCCCCchHHHHHHHHHHHH
Confidence            4899999999999999999999985

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=94.98  E-value=0.049  Score=60.03  Aligned_cols=26  Identities=27%  Similarity=0.249  Sum_probs=23.4

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .-|.|.|++||||||..+.|++.++.
T Consensus         4 ~~IvieG~~GsGKsT~~~~L~~~l~~   29 (195)
T TIGR00041         4 MFIVIEGIDGAGKTTQANLLKKLLQE   29 (195)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999875

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK00279 adk adenylate kinase; Reviewed

Probab=94.91  E-value=0.039  Score=62.02  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=21.5

Q ss_pred             EEEeccCCCCchHHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      |+|.|+|||||||+.+.|++.++
T Consensus         3 I~v~G~pGsGKsT~a~~la~~~~   25 (215)
T PRK00279          3 LILLGPPGAGKGTQAKFIAEKYG   25 (215)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            89999999999999999998876

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=94.90  E-value=0.014  Score=59.60  Aligned_cols=27  Identities=33%  Similarity=0.395  Sum_probs=24.1

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .+.++|+|||||||||+.+.++..+..
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence            468999999999999999999988764

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=94.90  E-value=0.15  Score=65.93  Aligned_cols=82  Identities=15%  Similarity=0.210  Sum_probs=56.0

Q ss_pred             HHhhccCCCCCccCCCCChHHHHHHHHhcCCc-cccCCceeeeecceEEEEeecCCC--CCCChhhhccceE-eecCCCC
Q psy4730         889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHL-YDFQTVTRVDLVDIIYITAMIPTM--NTITGRLLRHMNI-ISIDSFN  964 (1513)
Q Consensus       889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~-yd~~~~~~~~~~~~~~~~a~~~~~--~~~~~r~~~~f~~-~~~~~~~  964 (1513)
                      +|+|++|.-..+      ....|.+.++.|.. +++.......-.++.+||++||..  ..+++.++.||.+ +.+.++.
T Consensus        88 L~lDEi~rl~~~------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~  161 (589)
T TIGR02031        88 LYVDMANLLDDG------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVA  161 (589)
T ss_pred             EeccchhhCCHH------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCC
Confidence            457999955533      67788888887764 455445555556899999999973  6899999999998 4555544


Q ss_pred             hH-HHHHHHHHHh
Q psy4730         965 EA-TLSKIFTSVL  976 (1513)
Q Consensus       965 ~~-~l~~i~~~~l  976 (1513)
                      .. .-..|....+
T Consensus       162 ~~~er~eil~~~~  174 (589)
T TIGR02031       162 SQDLRVEIVRRER  174 (589)
T ss_pred             CHHHHHHHHHHHH
Confidence            33 3345555443

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=94.90  E-value=0.15  Score=64.82  Aligned_cols=45  Identities=13%  Similarity=0.301  Sum_probs=35.3

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+.+|.+++. ...+.+.+++|+..+.+.+|+.+.+...+..++..
T Consensus       149 ~tvfIL~Tt~-~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~k  193 (605)
T PRK05896        149 HVVFIFATTE-FQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKK  193 (605)
T ss_pred             cEEEEEECCC-hHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHH
Confidence            3455555543 36788899999999999999999999888887653

>CHL00195 ycf46 Ycf46; Provisional

Probab=94.86  E-value=0.26  Score=61.92  Aligned_cols=27  Identities=26%  Similarity=0.418  Sum_probs=24.0

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..+||+|+||||||||.+.+++|...+
T Consensus       258 ~pkGILL~GPpGTGKTllAkaiA~e~~  284 (489)
T CHL00195        258 TPRGLLLVGIQGTGKSLTAKAIANDWQ  284 (489)
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhC
Confidence            457999999999999999999988764

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=94.85  E-value=0.12  Score=66.38  Aligned_cols=45  Identities=16%  Similarity=0.285  Sum_probs=34.8

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+.||.++..+ +.+++-+.+|+..+.+..|+.+++......++..
T Consensus       149 ~~ifIlatt~~-~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~  193 (559)
T PRK05563        149 HVIFILATTEP-HKIPATILSRCQRFDFKRISVEDIVERLKYILDK  193 (559)
T ss_pred             CeEEEEEeCCh-hhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHH
Confidence            34555555433 5688889999999999999999999888887653

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=94.84  E-value=0.071  Score=63.75  Aligned_cols=32  Identities=16%  Similarity=0.301  Sum_probs=27.4

Q ss_pred             HHHHHhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1345 YEMILVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1345 ~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..++..+..|+++|+|||||||+++.|...+.
T Consensus       154 ~~~v~~~~nili~G~tgSGKTTll~aL~~~ip  185 (332)
T PRK13900        154 EHAVISKKNIIISGGTSTGKTTFTNAALREIP  185 (332)
T ss_pred             HHHHHcCCcEEEECCCCCCHHHHHHHHHhhCC
Confidence            34567788999999999999999999987764

>KOG0741|consensus

Probab=94.82  E-value=0.053  Score=65.54  Aligned_cols=53  Identities=23%  Similarity=0.325  Sum_probs=34.5

Q ss_pred             hHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHhcc--eEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1316 DELIEQIKINLAKRNAQATDWYIEKIIQVYEMILVRH--GLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1316 ~~l~~~i~~~~~~~~l~~~~~~~~k~~qL~~~~~~~~--gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .++.+.++.++..+-+.|  +++       +.+...|  |++|.||||+|||-+.+-+-+.++.
T Consensus       228 ~EFs~IFRRAFAsRvFpp--~vi-------e~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNA  282 (744)
T KOG0741|consen  228 KEFSDIFRRAFASRVFPP--EVI-------EQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNA  282 (744)
T ss_pred             HHHHHHHHHHHHhhcCCH--HHH-------HHcCccceeeEEEECCCCCChhHHHHHHHHHhcC
Confidence            345555555555554433  222       2233344  9999999999999999988877763

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=94.80  E-value=0.076  Score=64.97  Aligned_cols=24  Identities=33%  Similarity=0.652  Sum_probs=21.5

Q ss_pred             ccceeccCCCccchHhHHHHHhcc
Q psy4730         730 VPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       730 ~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      .++||+||||||||++++.+...+
T Consensus       117 ~~iLL~GP~GsGKT~lAraLA~~l  140 (413)
T TIGR00382       117 SNILLIGPTGSGKTLLAQTLARIL  140 (413)
T ss_pred             ceEEEECCCCcCHHHHHHHHHHhc
Confidence            479999999999999999998655

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=94.77  E-value=0.086  Score=68.16  Aligned_cols=86  Identities=17%  Similarity=0.119  Sum_probs=49.3

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC---------hhhccccccCCCCCCccCHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT---------MGQLYGEFDSASHEWRDGILA 1423 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t---------~~eL~G~~~~~t~eW~DG~l~ 1423 (1513)
                      .++|.|+||+|||++++.+.+.+..-....    ....+.+..||+..+.         ..+|+|.. |.++.-...+|.
T Consensus       783 vLYIyG~PGTGKTATVK~VLrELqeeaeqk----~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~-P~~GlsS~evLe  857 (1164)
T PTZ00112        783 ILYISGMPGTGKTATVYSVIQLLQHKTKQK----LLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKK-PPNALNSFKILD  857 (1164)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHHHhhc----cCCCceEEEEeCCccCCHHHHHHHHHHHHcCCC-CCccccHHHHHH
Confidence            356999999999999999987775432211    1112567788886544         23454533 332222333555


Q ss_pred             HHHHHhhccCCCCceEEEEcC
Q psy4730        1424 KTFREMAVSTTPDRKWIMFDG 1444 (1513)
Q Consensus      1424 ~~lR~~~~~~~~~~~WivfDG 1444 (1513)
                      .+++.... .......||+|.
T Consensus       858 rLF~~L~k-~~r~v~IIILDE  877 (1164)
T PTZ00112        858 RLFNQNKK-DNRNVSILIIDE  877 (1164)
T ss_pred             HHHhhhhc-ccccceEEEeeh
Confidence            55544311 122345899995

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=94.76  E-value=0.34  Score=54.88  Aligned_cols=32  Identities=34%  Similarity=0.650  Sum_probs=26.2

Q ss_pred             HHHhcCCccceeccCCCccchHhHHHHHhccC
Q psy4730         723 NLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       723 ~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~  754 (1513)
                      +.++...-.+.++|++|||||+++.+++..+.
T Consensus         7 ~~l~~~~fr~viIG~sGSGKT~li~~lL~~~~   38 (241)
T PF04665_consen    7 NSLLKDPFRMVIIGKSGSGKTTLIKSLLYYLR   38 (241)
T ss_pred             hHhcCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence            44555666789999999999999999997654

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK14529 adenylate kinase; Provisional

Probab=94.76  E-value=0.038  Score=62.03  Aligned_cols=24  Identities=17%  Similarity=0.203  Sum_probs=22.1

Q ss_pred             EEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      |+|+|||||||||..+.|++.++-
T Consensus         3 I~l~G~PGsGK~T~a~~La~~~~~   26 (223)
T PRK14529          3 ILIFGPNGSGKGTQGALVKKKYDL   26 (223)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCC
Confidence            889999999999999999988863

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=94.73  E-value=0.055  Score=65.28  Aligned_cols=145  Identities=14%  Similarity=0.149  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhcccccc
Q psy4730        1336 WYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFD 1411 (1513)
Q Consensus      1336 ~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~ 1411 (1513)
                      .+..-+-|+-..--...+|++.|+||+||+.+.+.+...-.+.   .       .-....+|+.+++    ..+|||+--
T Consensus        86 ~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~---~-------~~PFI~~NCa~~~en~~~~eLFG~~k  155 (403)
T COG1221          86 SLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARR---A-------EAPFIAFNCAAYSENLQEAELFGHEK  155 (403)
T ss_pred             HHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcc---c-------CCCEEEEEHHHhCcCHHHHHHhcccc
Confidence            3444444444445567799999999999999999988332221   1       1345778888887    556888421


Q ss_pred             C---CCCCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeec-
Q psy4730        1412 S---ASHEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE- 1485 (1513)
Q Consensus      1412 ~---~t~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~- 1485 (1513)
                      -   -..+=+-|+|-+          ...--+.+|  |.+.++--|.|=++||+.-.-.+.  +.=..+.++|+++.|. 
T Consensus       156 GaftGa~~~k~Glfe~----------A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG--~~~~~~~dVRli~AT~~  223 (403)
T COG1221         156 GAFTGAQGGKAGLFEQ----------ANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVG--GSQPRPVDVRLICATTE  223 (403)
T ss_pred             ceeecccCCcCchhee----------cCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecC--CCCCcCCCceeeecccc
Confidence            0   011222233322          123567788  888999999999999998766674  3667789999999984 


Q ss_pred             CCCCCCcc--hhhc-cEEEE
Q psy4730        1486 NLEFASPA--TVSR-VGMIY 1502 (1513)
Q Consensus      1486 ~l~~asPa--tvsR-cg~v~ 1502 (1513)
                      |+..+--+  +..| +..+.
T Consensus       224 ~l~~~~~~g~dl~~rl~~~~  243 (403)
T COG1221         224 DLEEAVLAGADLTRRLNILT  243 (403)
T ss_pred             CHHHHHHhhcchhhhhcCce
Confidence            44333333  5555 55443

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=94.71  E-value=0.017  Score=60.14  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=20.8

Q ss_pred             EEEeccCCCCchHHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      |+++|+|||||||+++.|++.++
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~~   24 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRLG   24 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHST
T ss_pred             EEEECCCCCCHHHHHHHHHHHCC
Confidence            79999999999999999987654

...

>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=94.69  E-value=0.19  Score=58.14  Aligned_cols=72  Identities=14%  Similarity=0.095  Sum_probs=50.7

Q ss_pred             ecceEEEEeecCCC------CCCChhhhccceEeecCCCChHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHH
Q psy4730         931 LVDIIYITAMIPTM------NTITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYS 1004 (1513)
Q Consensus       931 ~~~~~~~~a~~~~~------~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 1004 (1513)
                      -.++.++.+|.|..      -.--|.++++.++..+.+=+.++|..+-..++...-.  .+   .++.+++++.+..+|.
T Consensus       159 r~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~~~~~--~~---~~~~~~l~~~~~~iH~  233 (268)
T PF12780_consen  159 RKNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLSDIEL--LS---EELKKSLAEIMVFIHQ  233 (268)
T ss_dssp             CCCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCCHHHT--SS-----HHHHHHHHHHHHHH
T ss_pred             HhheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHHhhcc--cc---hhHHHHHHHHHHHHhc
Confidence            35889999999972      2456889999999999999999999999988765421  11   2345567777777776


Q ss_pred             hhh
Q psy4730        1005 EST 1007 (1513)
Q Consensus      1005 ~~~ 1007 (1513)
                      .+.
T Consensus       234 sv~  236 (268)
T PF12780_consen  234 SVE  236 (268)
T ss_dssp             HHH
T ss_pred             cch
Confidence            543

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=94.68  E-value=0.12  Score=62.54  Aligned_cols=26  Identities=27%  Similarity=0.443  Sum_probs=22.0

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      +--|++.|||||||||+++.|...+.
T Consensus       122 ~g~ili~G~tGSGKTT~l~al~~~i~  147 (343)
T TIGR01420       122 RGLILVTGPTGSGKSTTLASMIDYIN  147 (343)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence            34678999999999999999987664

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>KOG0737|consensus

Probab=94.64  E-value=0.037  Score=64.79  Aligned_cols=59  Identities=32%  Similarity=0.322  Sum_probs=42.8

Q ss_pred             eeecccchHHHHHHHHHHHhhcCCCCCCCCCCCCccchHHHHHHhcCEEEEEEcCCCCC
Q psy4730         640 LVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPT  698 (1513)
Q Consensus       640 lV~Tplt~r~~~~l~~al~~~~g~~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~~~  698 (1513)
                      +|+-|+-.+-+.....-+....|..+.||+|||||-+.|++|+..|-..+-+.-+.-++
T Consensus       107 ~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~  165 (386)
T KOG0737|consen  107 LVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS  165 (386)
T ss_pred             HHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch
Confidence            45556555444433333334567888999999999999999999999887777776555

>KOG0745|consensus

Probab=94.62  E-value=0.026  Score=66.78  Aligned_cols=87  Identities=23%  Similarity=0.357  Sum_probs=60.4

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
                      ..-|+|+||||||||-+.++||+.++              |.+.+-++-.+|..-+.|.       =.+.++.+++.++.
T Consensus       226 KSNvLllGPtGsGKTllaqTLAr~ld--------------VPfaIcDcTtLTQAGYVGe-------DVEsvi~KLl~~A~  284 (564)
T KOG0745|consen  226 KSNVLLLGPTGSGKTLLAQTLARVLD--------------VPFAICDCTTLTQAGYVGE-------DVESVIQKLLQEAE  284 (564)
T ss_pred             cccEEEECCCCCchhHHHHHHHHHhC--------------CCeEEecccchhhcccccc-------cHHHHHHHHHHHcc
Confidence            35899999999999999999999986              6777778888887766663       35678888888764


Q ss_pred             ccCCC-CceEEEEcCCCChH--HHHhhhcccC
Q psy4730        1431 VSTTP-DRKWIMFDGPIDAV--WIENMNTVLD 1459 (1513)
Q Consensus      1431 ~~~~~-~~~WivfDG~~d~~--wiE~LNsvLD 1459 (1513)
                      .+-.. .+-.+.+|. +|-.  -.|.+|..-|
T Consensus       285 ~nVekAQqGIVflDE-vDKi~~~~~~i~~~RD  315 (564)
T KOG0745|consen  285 YNVEKAQQGIVFLDE-VDKITKKAESIHTSRD  315 (564)
T ss_pred             CCHHHHhcCeEEEeh-hhhhcccCcccccccc
Confidence            43222 334555663 3322  1455665533

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Probab=94.62  E-value=0.098  Score=64.30  Aligned_cols=120  Identities=15%  Similarity=0.216  Sum_probs=83.8

Q ss_pred             HHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCCCCCCcc
Q psy4730        1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSASHEWRD 1419 (1513)
Q Consensus      1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~t~eW~D 1419 (1513)
                      +.+.-.+.-+|+|.|+|||||-.+.+.+...-.+-           ...+..||+.+++    -+||||+=   .     
T Consensus       157 i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~-----------~~PFVavNcaAip~~l~ESELFGhe---k-----  217 (464)
T COG2204         157 IAKVAPSDASVLITGESGTGKELVARAIHQASPRA-----------KGPFIAVNCAAIPENLLESELFGHE---K-----  217 (464)
T ss_pred             HHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCccc-----------CCCceeeecccCCHHHHHHHhhccc---c-----
Confidence            34445677899999999999999998887665542           2356889999999    56899952   2     


Q ss_pred             CHHHHHHHH-hhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEee
Q psy4730        1420 GILAKTFRE-MAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC 1484 (1513)
Q Consensus      1420 G~l~~~lR~-~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~ 1484 (1513)
                      |.||-+.++ ...-+....-=+.+|  |+++...=-.|=+||.+...-.+.+.+.|++  ++|+|--|
T Consensus       218 GAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~v--dvRiIaaT  283 (464)
T COG2204         218 GAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKV--DVRIIAAT  283 (464)
T ss_pred             cCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccce--eeEEEeec
Confidence            333333221 111111223457789  8888888889999999888888866666654  58888766

>TIGR01817 nifA Nif-specific regulatory protein

Probab=94.62  E-value=0.11  Score=66.75  Aligned_cols=118  Identities=16%  Similarity=0.187  Sum_probs=75.1

Q ss_pred             HHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCCCCC---
Q psy4730        1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSASHE--- 1416 (1513)
Q Consensus      1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~t~e--- 1416 (1513)
                      +..+.....+|+|.||+||||+++.+.+.....+-           .-.+..||+.+++    -.+|||.-...-.+   
T Consensus       212 ~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~-----------~~pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~  280 (534)
T TIGR01817       212 ARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRA-----------KRPFVKVNCAALSETLLESELFGHEKGAFTGAIA  280 (534)
T ss_pred             HHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCC-----------CCCeEEeecCCCCHHHHHHHHcCCCCCccCCCCc
Confidence            34445567799999999999999999998654321           1357888988887    46788854211000   


Q ss_pred             CccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEee
Q psy4730        1417 WRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC 1484 (1513)
Q Consensus      1417 W~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~ 1484 (1513)
                      ..-|.+..          ...-=+++|  +.+++..-..|-.+|++...-.+.++  -..+.++|+|+-+
T Consensus       281 ~~~g~~~~----------a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~--~~~~~~~riI~~s  338 (534)
T TIGR01817       281 QRKGRFEL----------ADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGN--RTLKVDVRLVAAT  338 (534)
T ss_pred             CCCCcccc----------cCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCC--ceEeecEEEEEeC
Confidence            11222211          112457888  56778778888888887654444332  2455678999866

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>PRK06526 transposase; Provisional

Probab=94.59  E-value=0.035  Score=63.86  Aligned_cols=86  Identities=14%  Similarity=0.197  Sum_probs=53.1

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
                      .+++++|+||||+|||.+...++...-.-+ .        .|    ++   .+..+++..+..   .+.+|-+...+++.
T Consensus        97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g-~--------~v----~f---~t~~~l~~~l~~---~~~~~~~~~~l~~l  157 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRACQAG-H--------RV----LF---ATAAQWVARLAA---AHHAGRLQAELVKL  157 (254)
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHHHHCC-C--------ch----hh---hhHHHHHHHHHH---HHhcCcHHHHHHHh
Confidence            467999999999999999999976554311 0        11    11   334444443321   13455555566554


Q ss_pred             hccCCCCceEEEEc--C--CCChHHHHhhhcccC
Q psy4730        1430 AVSTTPDRKWIMFD--G--PIDAVWIENMNTVLD 1459 (1513)
Q Consensus      1430 ~~~~~~~~~WivfD--G--~~d~~wiE~LNsvLD 1459 (1513)
                      .     ....+|+|  |  +.++.+.+-|..+++
T Consensus       158 ~-----~~dlLIIDD~g~~~~~~~~~~~L~~li~  186 (254)
T PRK06526        158 G-----RYPLLIVDEVGYIPFEPEAANLFFQLVS  186 (254)
T ss_pred             c-----cCCEEEEcccccCCCCHHHHHHHHHHHH
Confidence            2     24789999  4  346777777777775

>PRK08116 hypothetical protein; Validated

Probab=94.58  E-value=0.046  Score=63.52  Aligned_cols=27  Identities=26%  Similarity=0.458  Sum_probs=22.7

Q ss_pred             CCccceeccCCCccchHhHHHHHhccC
Q psy4730         728 NDVPMMFVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       728 ~~~~~ll~G~~g~GKt~~v~~~~~~~~  754 (1513)
                      .+.+++|.|++|||||.++....+.+.
T Consensus       113 ~~~gl~l~G~~GtGKThLa~aia~~l~  139 (268)
T PRK08116        113 ENVGLLLWGSVGTGKTYLAACIANELI  139 (268)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            456799999999999999998877653

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]

Probab=94.55  E-value=0.37  Score=57.88  Aligned_cols=75  Identities=12%  Similarity=0.180  Sum_probs=49.2

Q ss_pred             HhhccCCCCCccCCCCChHHHHHHHHhcC-CccccCCceeeeecceEEEEeecCCCCCCChhhhccceE-eecCCCChHH
Q psy4730         890 ILDDLNMPQKETYGAQPAVELLRQIIDHK-HLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNI-ISIDSFNEAT  967 (1513)
Q Consensus       890 ~~dd~n~p~~~~~~~q~~le~lr~~~~~~-~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~-~~~~~~~~~~  967 (1513)
                      ++|++|+-.-.      ....|=.....| ---.+.......--++.+||+|||-+-.|-|-|+-||-+ +.+.+|...+
T Consensus       149 YvDEvnlL~d~------lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~  222 (423)
T COG1239         149 YVDEVNLLDDH------LVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLE  222 (423)
T ss_pred             EEeccccccHH------HHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHH
Confidence            44888844311      223333333333 234444555555559999999999999999999999988 7888887775


Q ss_pred             HHH
Q psy4730         968 LSK  970 (1513)
Q Consensus       968 l~~  970 (1513)
                      ..-
T Consensus       223 ~rv  225 (423)
T COG1239         223 ERV  225 (423)
T ss_pred             HHH
Confidence            543

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=94.48  E-value=0.23  Score=62.83  Aligned_cols=128  Identities=18%  Similarity=0.240  Sum_probs=74.5

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC-hhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-MGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t-~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
                      -+.||||||.||||+-+..|+|+++              .+.++.-.-+. -.|.=|.-. .==+---|-+.+.|+++..
T Consensus       352 ILcLVGPPGVGKTSLgkSIA~al~R--------------kfvR~sLGGvrDEAEIRGHRR-TYIGamPGrIiQ~mkka~~  416 (782)
T COG0466         352 ILCLVGPPGVGKTSLGKSIAKALGR--------------KFVRISLGGVRDEAEIRGHRR-TYIGAMPGKIIQGMKKAGV  416 (782)
T ss_pred             EEEEECCCCCCchhHHHHHHHHhCC--------------CEEEEecCccccHHHhccccc-cccccCChHHHHHHHHhCC
Confidence            4568999999999999999999986              34444332222 222222100 0001334777788887732


Q ss_pred             cCCCCceEEEEc----------CCCChHHHHhhhcccCCCCceeecC---CCeeecCCCCeEEEeecCCCCCCcchhhcc
Q psy4730        1432 STTPDRKWIMFD----------GPIDAVWIENMNTVLDDNKKLCLIN---GEIIKMSNTMNLIFECENLEFASPATVSRV 1498 (1513)
Q Consensus      1432 ~~~~~~~WivfD----------G~~d~~wiE~LNsvLDdn~~L~L~n---Ge~i~~~~~~~~iFE~~~l~~asPatvsRc 1498 (1513)
                          ..=-|++|          |  ||  .-+|--|||+..--+..+   ...+-+. ++-|+--..++..+.++..-|+
T Consensus       417 ----~NPv~LLDEIDKm~ss~rG--DP--aSALLEVLDPEQN~~F~DhYLev~yDLS-~VmFiaTANsl~tIP~PLlDRM  487 (782)
T COG0466         417 ----KNPVFLLDEIDKMGSSFRG--DP--ASALLEVLDPEQNNTFSDHYLEVPYDLS-KVMFIATANSLDTIPAPLLDRM  487 (782)
T ss_pred             ----cCCeEEeechhhccCCCCC--Ch--HHHHHhhcCHhhcCchhhccccCccchh-heEEEeecCccccCChHHhcce
Confidence                23456777          4  44  245566777643322221   1112222 3444555566777889999999


Q ss_pred             EEEEee
Q psy4730        1499 GMIYFE 1504 (1513)
Q Consensus      1499 g~v~~~ 1504 (1513)
                      -+|.++
T Consensus       488 EiI~ls  493 (782)
T COG0466         488 EVIRLS  493 (782)
T ss_pred             eeeeec
Confidence            998765

>KOG1051|consensus

Probab=94.47  E-value=0.078  Score=69.56  Aligned_cols=107  Identities=15%  Similarity=0.254  Sum_probs=72.0

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC-hhhccccccCCCCCCccC-HHHHHHHHhh
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-MGQLYGEFDSASHEWRDG-ILAKTFREMA 1430 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t-~~eL~G~~~~~t~eW~DG-~l~~~lR~~~ 1430 (1513)
                      -.|++||+|+|||-+.++||+.+-.  .         ...+.+|+-++.. ...+.|. +|-=.++..| -|+.++|+--
T Consensus       593 wflflGpdgvGKt~lAkaLA~~~Fg--s---------e~~~IriDmse~~evskligs-p~gyvG~e~gg~LteavrrrP  660 (898)
T KOG1051|consen  593 WFLFLGPDGVGKTELAKALAEYVFG--S---------EENFIRLDMSEFQEVSKLIGS-PPGYVGKEEGGQLTEAVKRRP  660 (898)
T ss_pred             EEEEECCCchhHHHHHHHHHHHHcC--C---------ccceEEechhhhhhhhhccCC-CcccccchhHHHHHHHHhcCC
Confidence            6899999999999999999988732  1         2445666655422 3345553 1111345555 8899998752


Q ss_pred             ccCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCC
Q psy4730        1431 VSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTM 1478 (1513)
Q Consensus      1431 ~~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~ 1478 (1513)
                            ..=|+||.  -.|+...=.|--+||+. .+|=+-|..|.+.+.+
T Consensus       661 ------~sVVLfdeIEkAh~~v~n~llq~lD~G-rltDs~Gr~Vd~kN~I  703 (898)
T KOG1051|consen  661 ------YSVVLFEEIEKAHPDVLNILLQLLDRG-RLTDSHGREVDFKNAI  703 (898)
T ss_pred             ------ceEEEEechhhcCHHHHHHHHHHHhcC-ccccCCCcEeeccceE
Confidence                  26788883  45666666666777766 5777789999988553

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=94.47  E-value=0.11  Score=62.78  Aligned_cols=106  Identities=18%  Similarity=0.172  Sum_probs=58.1

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC-------hhhccccccCCCCCCccCH
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-------MGQLYGEFDSASHEWRDGI 1421 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t-------~~eL~G~~~~~t~eW~DG~ 1421 (1513)
                      .....++|+||||+||||++..|+..+..-.+.       .++-+...++--+.       ..+.+|-  |...-=..+-
T Consensus       135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-------~~V~lit~D~~R~ga~EqL~~~a~~~gv--~~~~~~~~~~  205 (374)
T PRK14722        135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGA-------SKVALLTTDSYRIGGHEQLRIFGKILGV--PVHAVKDGGD  205 (374)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-------CeEEEEecccccccHHHHHHHHHHHcCC--ceEecCCccc
Confidence            345689999999999999999998765321110       01222222222111       1223331  1111112233


Q ss_pred             HHHHHHHhhccCCCCceEEEEc--C--CCChHHHHhhhcccC----CCCceeecC
Q psy4730        1422 LAKTFREMAVSTTPDRKWIMFD--G--PIDAVWIENMNTVLD----DNKKLCLIN 1468 (1513)
Q Consensus      1422 l~~~lR~~~~~~~~~~~WivfD--G--~~d~~wiE~LNsvLD----dn~~L~L~n 1468 (1513)
                      +...+++.     .+...|++|  |  +.|..+.|.+..+..    ..+.|+|+-
T Consensus       206 l~~~l~~l-----~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsA  255 (374)
T PRK14722        206 LQLALAEL-----RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNA  255 (374)
T ss_pred             HHHHHHHh-----cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecC
Confidence            44555544     234889999  4  557888888876643    234677753

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=94.44  E-value=0.1  Score=68.56  Aligned_cols=25  Identities=28%  Similarity=0.298  Sum_probs=22.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      +.++|.||||+||||+.+.+++.++
T Consensus        53 ~slLL~GPpGtGKTTLA~aIA~~~~   77 (725)
T PRK13341         53 GSLILYGPPGVGKTTLARIIANHTR   77 (725)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhc
Confidence            4799999999999999999997653

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=94.42  E-value=0.052  Score=66.51  Aligned_cols=26  Identities=27%  Similarity=0.358  Sum_probs=23.1

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..||+|+||||||||++.+.++..++
T Consensus       179 pkgvLL~GppGTGKT~LAkalA~~l~  204 (398)
T PTZ00454        179 PRGVLLYGPPGTGKTMLAKAVAHHTT  204 (398)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhcC
Confidence            46999999999999999999987653

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=94.41  E-value=0.22  Score=58.00  Aligned_cols=94  Identities=22%  Similarity=0.333  Sum_probs=63.8

Q ss_pred             eEEecCceEEEEEecCCCCCCCCCchhHHhhhhcccccCCCh---HHHHHHHHH----hcCccc-----hHHHHHHHHHH
Q psy4730        1166 EISLNPTSMIFITMNPGYAGRTELPDNLKVLFRSVAMMVPDY---AMIGEISLY----SMGFQN-----AKILAEKIVYT 1233 (1513)
Q Consensus      1166 ~i~~~p~~~iFiTmNp~y~gr~~LP~nLk~lFR~v~~~~PD~---~~I~ei~L~----~~GF~~-----a~~la~ki~~~ 1233 (1513)
                      ...--.++.+.++|||+ +||..+|+-|.+.|+-+++..|+-   ..|-..+|.    ..+|..     +..+....+.+
T Consensus       142 ~~~~i~~i~~vaa~~p~-~Gr~~is~R~~r~f~i~~~~~p~~~sl~~If~~il~~~l~~~~f~~~v~~~~~~lv~ati~l  220 (272)
T PF12775_consen  142 EWKSIEDIQFVAAMNPT-GGRNPISPRFLRHFNILNIPYPSDESLNTIFSSILQSHLKNGGFPEDVQKLADKLVQATIEL  220 (272)
T ss_dssp             EEEEECSEEEEEEESST-TT--SHHHHHHTTEEEEE----TCCHHHHHHHHHHHHHTCHTTSSGGGCCCHHHHHHHHHHH
T ss_pred             EEEEEeeeEEEEecCCC-CCCCCCChHHhhheEEEEecCCChHHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHH
Confidence            33333467788999996 589999999999999999998877   334333333    346643     45667777889


Q ss_pred             HHHHHhhcc---CCCCCCcchhhHHHHHHH
Q psy4730        1234 YKLCSEQLS---SQSHYDYGMRAVKSVLNA 1260 (1513)
Q Consensus      1234 ~~l~~~~ls---~q~~yd~glR~lk~vl~~ 1260 (1513)
                      |+.+++.+.   ...||.|.||.+-+|+.-
T Consensus       221 y~~i~~~~~ptp~k~HY~FnlRDlsrv~qG  250 (272)
T PF12775_consen  221 YQKIRQQFLPTPSKPHYTFNLRDLSRVFQG  250 (272)
T ss_dssp             HHHHHHHS-TTTTCTTTTSHHHHHHHHHHH
T ss_pred             HHhhhcccCCCCccceeeccHHHHHHHHHH
Confidence            998888774   247999999999887654

>PRK08181 transposase; Validated

Probab=94.39  E-value=0.078  Score=61.40  Aligned_cols=87  Identities=13%  Similarity=0.182  Sum_probs=55.1

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
                      .+.+++|+||||+|||.+..+++.....-+ .        .|.+       ++..+|+..+..   .+.+|-+.+.++..
T Consensus       105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g-~--------~v~f-------~~~~~L~~~l~~---a~~~~~~~~~l~~l  165 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALIENG-W--------RVLF-------TRTTDLVQKLQV---ARRELQLESAIAKL  165 (269)
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcC-C--------ceee-------eeHHHHHHHHHH---HHhCCcHHHHHHHH
Confidence            467899999999999999999987664311 0        1211       134556655532   24455555666554


Q ss_pred             hccCCCCceEEEEc--C--CCChHHHHhhhcccCC
Q psy4730        1430 AVSTTPDRKWIMFD--G--PIDAVWIENMNTVLDD 1460 (1513)
Q Consensus      1430 ~~~~~~~~~WivfD--G--~~d~~wiE~LNsvLDd 1460 (1513)
                      .     ....+|+|  |  +.++.|.+.|-.+++.
T Consensus       166 ~-----~~dLLIIDDlg~~~~~~~~~~~Lf~lin~  195 (269)
T PRK08181        166 D-----KFDLLILDDLAYVTKDQAETSVLFELISA  195 (269)
T ss_pred             h-----cCCEEEEeccccccCCHHHHHHHHHHHHH
Confidence            2     23688888  3  3466677777777753

>PRK06762 hypothetical protein; Provisional

Probab=94.38  E-value=0.029  Score=60.14  Aligned_cols=24  Identities=33%  Similarity=0.421  Sum_probs=21.9

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      .-|+|+|++||||||+.+.|++.+
T Consensus         3 ~li~i~G~~GsGKST~A~~L~~~l   26 (166)
T PRK06762          3 TLIIIRGNSGSGKTTIAKQLQERL   26 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999887

>smart00763 AAA_PrkA PrkA AAA domain

Probab=94.37  E-value=0.059  Score=64.20  Aligned_cols=29  Identities=24%  Similarity=0.376  Sum_probs=26.6

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDI 1378 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l 1378 (1513)
                      .+..++|+|||||||||+.+.|++.++..
T Consensus        77 ~r~il~L~GPPGsGKStla~~La~~l~~y  105 (361)
T smart00763       77 RKQILYLLGPVGGGKSSLVECLKRGLEEY  105 (361)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence            46799999999999999999999999874

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PLN02842 nucleotide kinase

Probab=94.37  E-value=0.064  Score=66.64  Aligned_cols=22  Identities=23%  Similarity=0.406  Sum_probs=20.3

Q ss_pred             EEeccCCCCchHHHHHHHHHHH
Q psy4730        1355 MVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1355 ilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ||+|+|||||||..+.|++.++
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg   22 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFG   22 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhC
Confidence            6899999999999999998775

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator

Probab=94.37  E-value=0.63  Score=58.41  Aligned_cols=121  Identities=10%  Similarity=0.082  Sum_probs=63.6

Q ss_pred             HHHHHHHHhcCCccccCCceeeeecceEEEEeecCC------CCCCChhhhccceEeecCCCChH----HHHHHHHHHhh
Q psy4730         908 VELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------MNTITGRLLRHMNIISIDSFNEA----TLSKIFTSVLD  977 (1513)
Q Consensus       908 le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------~~~~~~r~~~~f~~~~~~~~~~~----~l~~i~~~~l~  977 (1513)
                      -+-|.++++.+.+.-.+... ..-.|+.+|+|++.+      ...+.+.|+.+++.+.+.=|+-.    ++..+...++.
T Consensus       250 q~~l~~~l~~~~~~~~~~~~-~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~  328 (445)
T TIGR02915       250 QAKLLRFLQERVIERLGGRE-EIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLE  328 (445)
T ss_pred             HHHHHHHHhhCeEEeCCCCc-eeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHH
Confidence            44455566655544333222 122489999999886      35688888888887666555543    55555555444


Q ss_pred             hhhhccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccccchhhHHHHHhhhcccCCcccCChh
Q psy4730         978 WHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIMGLTQLPASHCKAPD 1045 (1513)
Q Consensus       978 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hy~fnlrd~~~~~~g~~~~~~~~~~~~~ 1045 (1513)
                      .+ +..+...+..    +...+++..           ...+|-=|+|.|.++++-..........+..
T Consensus       329 ~~-~~~~~~~~~~----~~~~a~~~L-----------~~~~wpgNvreL~~~i~~a~~~~~~~~i~~~  380 (445)
T TIGR02915       329 RF-ARELKRKTKG----FTDDALRAL-----------EAHAWPGNVRELENKVKRAVIMAEGNQITAE  380 (445)
T ss_pred             HH-HHHhCCCCCC----CCHHHHHHH-----------HhCCCCChHHHHHHHHHHHHHhCCCCcccHH
Confidence            32 1101000000    111111111           2345666999999998766544444333333

Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=94.36  E-value=0.16  Score=67.18  Aligned_cols=119  Identities=17%  Similarity=0.176  Sum_probs=76.0

Q ss_pred             HHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCC-CCC-
Q psy4730        1343 QVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSA-SHE- 1416 (1513)
Q Consensus      1343 qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~-t~e- 1416 (1513)
                      ++-.+.....+|+|.|++|||||++.+.+.....+           ....+..+|+.+++    -.+|||.-... ++. 
T Consensus       391 ~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r-----------~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~  459 (686)
T PRK15429        391 QVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR-----------NNRRMVKMNCAAMPAGLLESDLFGHERGAFTGAS  459 (686)
T ss_pred             HHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC-----------CCCCeEEEecccCChhHhhhhhcCcccccccccc
Confidence            34445567779999999999999998888654322           01356778888776    45788853311 010 


Q ss_pred             -CccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEee
Q psy4730        1417 -WRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC 1484 (1513)
Q Consensus      1417 -W~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~ 1484 (1513)
                       ..-|.+    ..+      ..-=+++|  +.+++..-+.|-.+|++...-.+.++  -..+.++|+|+-+
T Consensus       460 ~~~~g~l----e~a------~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~--~~~~~~~RiI~~t  518 (686)
T PRK15429        460 AQRIGRF----ELA------DKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSN--KIIQTDVRLIAAT  518 (686)
T ss_pred             cchhhHH----Hhc------CCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCC--CcccceEEEEEeC
Confidence             111222    111      12458888  67788889999999988755444333  3446678999876

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=94.33  E-value=0.43  Score=62.41  Aligned_cols=80  Identities=13%  Similarity=0.240  Sum_probs=56.3

Q ss_pred             HHhhccCCCCCccCCCCChHHHHHHHHhcCCc-cccCCceeeeecceEEEEeecCCCCCCChhhhccceE-eecCCCCh-
Q psy4730         889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHL-YDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNI-ISIDSFNE-  965 (1513)
Q Consensus       889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~-yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~-~~~~~~~~-  965 (1513)
                      +|+|++|.-..+      ..+.|.+.++.|.. +.+.......-.++.++|+|||....+++.|+.||.+ +.+++|.. 
T Consensus       130 L~lDEi~~l~~~------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~  203 (633)
T TIGR02442       130 LYIDEVNLLDDH------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDP  203 (633)
T ss_pred             EEeChhhhCCHH------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCch
Confidence            567999955533      67888888887753 4444444444468999999998767799999999976 67777754 


Q ss_pred             HHHHHHHHH
Q psy4730         966 ATLSKIFTS  974 (1513)
Q Consensus       966 ~~l~~i~~~  974 (1513)
                      +....|...
T Consensus       204 ~~~~~il~~  212 (633)
T TIGR02442       204 EERVEIIRR  212 (633)
T ss_pred             HHHHHHHHH
Confidence            343444443

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=94.26  E-value=0.092  Score=63.42  Aligned_cols=28  Identities=18%  Similarity=0.299  Sum_probs=23.9

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .+--|+++|||||||||+++.|.+.++.
T Consensus       133 ~~glilI~GpTGSGKTTtL~aLl~~i~~  160 (358)
T TIGR02524       133 QEGIVFITGATGSGKSTLLAAIIRELAE  160 (358)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3457999999999999999999887753

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=94.25  E-value=0.063  Score=58.02  Aligned_cols=25  Identities=36%  Similarity=0.284  Sum_probs=22.2

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      -++++|++|+||||+...++..+..
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~   26 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKK   26 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999988764

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.25  E-value=0.026  Score=63.17  Aligned_cols=27  Identities=22%  Similarity=0.161  Sum_probs=22.9

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ...-|-|+|||||||||+.+++|....
T Consensus        28 ~GEfvsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          28 KGEFVAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345799999999999999999986654

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=94.25  E-value=0.037  Score=65.44  Aligned_cols=148  Identities=13%  Similarity=0.160  Sum_probs=82.7

Q ss_pred             cCccccHHHHHHHH-HHHHH------HHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCC
Q psy4730        1329 RNAQATDWYIEKII-QVYEM------ILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI 1401 (1513)
Q Consensus      1329 ~~l~~~~~~~~k~~-qL~~~------~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~ 1401 (1513)
                      .++...+.|..|+. ++-.-      +..-.|+.|.||||||||.+.+.+++.++.                   ++-.+
T Consensus       119 g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~-------------------~~i~v  179 (413)
T PLN00020        119 GGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGI-------------------EPIVM  179 (413)
T ss_pred             CccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCC-------------------CeEEE
Confidence            67777888888775 33222      234459999999999999999999988762                   23345


Q ss_pred             ChhhccccccCCCCCCccCHHHHHHHHhhcc--CCCCceEEEEcC------CC---ChHHH-----HhhhcccCCCCcee
Q psy4730        1402 TMGQLYGEFDSASHEWRDGILAKTFREMAVS--TTPDRKWIMFDG------PI---DAVWI-----ENMNTVLDDNKKLC 1465 (1513)
Q Consensus      1402 t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~~--~~~~~~WivfDG------~~---d~~wi-----E~LNsvLDdn~~L~ 1465 (1513)
                      +..||++.+-=++    .-.+-.+++.+...  ......-|++|.      .-   +....     -.|=+++|.-....
T Consensus       180 sa~eL~sk~vGEs----Ek~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~  255 (413)
T PLN00020        180 SAGELESENAGEP----GKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVS  255 (413)
T ss_pred             EHHHhhcCcCCcH----HHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCcccc
Confidence            5666766553121    11222333333221  234567888882      11   11111     22223334322222


Q ss_pred             ecCCC--eeecCCCCeEEEeecCCCCCCcchhh--ccEE
Q psy4730        1466 LINGE--IIKMSNTMNLIFECENLEFASPATVS--RVGM 1500 (1513)
Q Consensus      1466 L~nGe--~i~~~~~~~~iFE~~~l~~asPatvs--Rcg~ 1500 (1513)
                      ++ |.  -..-.+.+.+|.-|.+.+..-||.+-  |.--
T Consensus       256 l~-G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk  293 (413)
T PLN00020        256 LG-GDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEK  293 (413)
T ss_pred             cc-ccccccccCCCceEEEeCCCcccCCHhHcCCCCCCc
Confidence            32 11  01124568888888888888888776  5543

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.25  E-value=0.39  Score=60.58  Aligned_cols=44  Identities=9%  Similarity=0.172  Sum_probs=33.6

Q ss_pred             eEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         934 IIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       934 ~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      +.++.+++. ...+++.+.+|+..+.+.+|+.+.+......++..
T Consensus       150 ~v~Il~tt~-~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~  193 (486)
T PRK14953        150 TIFILCTTE-YDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNE  193 (486)
T ss_pred             eEEEEEECC-HHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHH
Confidence            445555433 34578889999999999999999999888887654

>PLN02459 probable adenylate kinase

Probab=94.21  E-value=0.082  Score=60.48  Aligned_cols=99  Identities=17%  Similarity=0.150  Sum_probs=50.3

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccc-cceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKE-FKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~-~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
                      -++|+|||||||||..+.|++.++-..    .+.+. ..-   .+...+ ........+-..+.-=-|.+...++++...
T Consensus        31 ~ii~~G~PGsGK~T~a~~la~~~~~~~----is~gdllR~---ei~~~t-~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~  102 (261)
T PLN02459         31 NWVFLGCPGVGKGTYASRLSKLLGVPH----IATGDLVRE---EIKSSG-PLGAQLKEIVNQGKLVPDEIIFSLLSKRLE  102 (261)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcE----EeCcHHHHH---HHhccc-hhHHHHHHHHHcCCccCHHHHHHHHHHHHh
Confidence            388899999999999999998775310    00000 000   011111 111111111112222445566666665543


Q ss_pred             cC-CCCceEEEEcC-CCChHHHHhhhcccC
Q psy4730        1432 ST-TPDRKWIMFDG-PIDAVWIENMNTVLD 1459 (1513)
Q Consensus      1432 ~~-~~~~~WivfDG-~~d~~wiE~LNsvLD 1459 (1513)
                      .. ....+=+|+|| |-...-++.|.....
T Consensus       103 ~~~~~~~~g~iLDGFPRt~~Qa~~Le~~~~  132 (261)
T PLN02459        103 AGEEEGESGFILDGFPRTVRQAEILEGVTD  132 (261)
T ss_pred             cccccCCceEEEeCCCCCHHHHHHHHhcCC
Confidence            32 12234477899 556666777766543

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=94.20  E-value=0.034  Score=56.43  Aligned_cols=22  Identities=36%  Similarity=0.410  Sum_probs=20.8

Q ss_pred             EEEeccCCCCchHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      |+|.|+|||||||+.+.|++.+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999986

...

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=94.18  E-value=0.045  Score=68.99  Aligned_cols=25  Identities=40%  Similarity=0.422  Sum_probs=22.6

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      +-.+|.|||||||||++++||+.++
T Consensus        46 ~iLlLtGP~G~GKtttv~~La~elg   70 (519)
T PF03215_consen   46 RILLLTGPSGCGKTTTVKVLAKELG   70 (519)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC
Confidence            3578899999999999999999886

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=94.17  E-value=0.027  Score=66.61  Aligned_cols=24  Identities=25%  Similarity=0.241  Sum_probs=20.8

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      .-+.|+|||||||||+++++|.-.
T Consensus        30 ef~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          30 EFVVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            459999999999999999998543

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=94.16  E-value=0.2  Score=58.17  Aligned_cols=33  Identities=27%  Similarity=0.426  Sum_probs=25.2

Q ss_pred             HHHHHHhcce-EEEeccCCCCchHHHHHHHHHHH
Q psy4730        1344 VYEMILVRHG-LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1344 L~~~~~~~~g-vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      |.+++...+| |++.|||||||||+++.+...+.
T Consensus        72 l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~  105 (264)
T cd01129          72 FRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN  105 (264)
T ss_pred             HHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence            3444444454 89999999999999998877664

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PRK05642 DNA replication initiation factor; Validated

Probab=94.14  E-value=0.062  Score=61.23  Aligned_cols=25  Identities=12%  Similarity=0.090  Sum_probs=22.0

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .+++|.||+|+|||.+.++++..+.
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~   70 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFE   70 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            6899999999999999999877654

>KOG2028|consensus

Probab=94.13  E-value=0.14  Score=59.30  Aligned_cols=115  Identities=24%  Similarity=0.332  Sum_probs=67.1

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC--hhhccccccCCCCCCccCHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT--MGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t--~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
                      ..+||-||||+||||+.+.|+..-..             ..++.|.-.+.+  .+++=            |+|-++=+..
T Consensus       163 pSmIlWGppG~GKTtlArlia~tsk~-------------~SyrfvelSAt~a~t~dvR------------~ife~aq~~~  217 (554)
T KOG2028|consen  163 PSMILWGPPGTGKTTLARLIASTSKK-------------HSYRFVELSATNAKTNDVR------------DIFEQAQNEK  217 (554)
T ss_pred             CceEEecCCCCchHHHHHHHHhhcCC-------------CceEEEEEeccccchHHHH------------HHHHHHHHHH
Confidence            48999999999999999999866432             223344433333  12211            1222211111


Q ss_pred             hccCCCCceEEEE-cCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCC-CCcchhhccEEEEeeCC
Q psy4730        1430 AVSTTPDRKWIMF-DGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEF-ASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1430 ~~~~~~~~~Wivf-DG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~-asPatvsRcg~v~~~~~ 1506 (1513)
                         .-.+++=|+| |.      |.++|.+=-|.=.-.+-+|.++-+...      |+|-+. .--|.+|||-++.+++-
T Consensus       218 ---~l~krkTilFiDE------iHRFNksQQD~fLP~VE~G~I~lIGAT------TENPSFqln~aLlSRC~VfvLekL  281 (554)
T KOG2028|consen  218 ---SLTKRKTILFIDE------IHRFNKSQQDTFLPHVENGDITLIGAT------TENPSFQLNAALLSRCRVFVLEKL  281 (554)
T ss_pred             ---hhhcceeEEEeHH------hhhhhhhhhhcccceeccCceEEEecc------cCCCccchhHHHHhccceeEeccC
Confidence               1234444444 43      788998876664445557888766432      222221 33589999999887753

>KOG0744|consensus

Probab=94.08  E-value=0.033  Score=63.67  Aligned_cols=29  Identities=28%  Similarity=0.338  Sum_probs=25.7

Q ss_pred             HHhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1348 ILVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1348 ~~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      +..++-|+|.||||+||||++++||.-++
T Consensus       174 It~NRliLlhGPPGTGKTSLCKaLaQkLS  202 (423)
T KOG0744|consen  174 ITWNRLILLHGPPGTGKTSLCKALAQKLS  202 (423)
T ss_pred             eeeeeEEEEeCCCCCChhHHHHHHHHhhe
Confidence            45678999999999999999999997765

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=94.05  E-value=0.046  Score=64.78  Aligned_cols=33  Identities=21%  Similarity=0.288  Sum_probs=28.5

Q ss_pred             HHHHHHhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      |..++..+..+++.|+|||||||+.+.|...+.
T Consensus       137 L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~  169 (323)
T PRK13833        137 IRSAIDSRLNIVISGGTGSGKTTLANAVIAEIV  169 (323)
T ss_pred             HHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence            555677788999999999999999999988764

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=94.05  E-value=0.03  Score=57.92  Aligned_cols=21  Identities=43%  Similarity=0.525  Sum_probs=18.9

Q ss_pred             eEEEeccCCCCchHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      =|||+|++||||||+++.|..
T Consensus         3 rimliG~~g~GKTTL~q~L~~   23 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNG   23 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcC
Confidence            489999999999999999854

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=94.02  E-value=0.016  Score=64.19  Aligned_cols=86  Identities=14%  Similarity=0.300  Sum_probs=49.5

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccC---------------CC
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDS---------------AS 1414 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~---------------~t 1414 (1513)
                      ....+++.|+|||||||++..+...+.  .           ..+.+|||..+-  .++-.++.               ..
T Consensus        14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~--~-----------~~~v~i~~D~~r--~~~p~~~~~~~~~~~~~~~~~~~~a   78 (199)
T PF06414_consen   14 KPTLIIIAGQPGSGKSTLARQLLEEFG--G-----------GGIVVIDADEFR--QFHPDYDELLKADPDEASELTQKEA   78 (199)
T ss_dssp             S-EEEEEES-TTSTTHHHHHHHHHHT---T-----------T-SEEE-GGGGG--GGSTTHHHHHHHHCCCTHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCHHHHHHHhhhhcc--C-----------CCeEEEehHHHH--HhccchhhhhhhhhhhhHHHHHHHH
Confidence            345889999999999999999877663  1           234667766542  22221111               11


Q ss_pred             CCCccCHHHHHHHHhhccCCCCceEEEEcCCC-ChHHHHhhhccc
Q psy4730        1415 HEWRDGILAKTFREMAVSTTPDRKWIMFDGPI-DAVWIENMNTVL 1458 (1513)
Q Consensus      1415 ~eW~DG~l~~~lR~~~~~~~~~~~WivfDG~~-d~~wiE~LNsvL 1458 (1513)
                      ..|.|.++..++++.        .=|||||.. +++++..+-..+
T Consensus        79 ~~~~~~~~~~a~~~~--------~nii~E~tl~~~~~~~~~~~~~  115 (199)
T PF06414_consen   79 SRLAEKLIEYAIENR--------YNIIFEGTLSNPSKLRKLIREA  115 (199)
T ss_dssp             HHHHHHHHHHHHHCT----------EEEE--TTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--------CCEEEecCCCChhHHHHHHHHH
Confidence            237777777777765        558889877 467777544444

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=94.02  E-value=0.077  Score=64.41  Aligned_cols=131  Identities=16%  Similarity=0.158  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhh--------hcccc---c---ccceeEEEecCCCCCh
Q psy4730        1338 IEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK--------KSATM---K---EFKTGYKIINPKSITM 1403 (1513)
Q Consensus      1338 ~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~--------~~~~~---~---~~~~~~~~inp~~~t~ 1403 (1513)
                      .+.++.+  +---.|+++++||||||||.+.+-|...+--+...        .+...   .   -....-++-..++.|+
T Consensus       187 AKrAlei--AAAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~rPFr~PHHsaS~  264 (490)
T COG0606         187 AKRALEI--AAAGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHHSASL  264 (490)
T ss_pred             HHHHHHH--HHhcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeCCccCCCccchH
Confidence            3444443  34468999999999999999998764332211110        00000   0   0112234556677889


Q ss_pred             hhccccccCCCCCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEE
Q psy4730        1404 GQLYGEFDSASHEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLI 1481 (1513)
Q Consensus      1404 ~eL~G~~~~~t~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~i 1481 (1513)
                      ..|.|.+    +.-.-|-++.+          ++--+.+|  +.-....+|+|-.=|++.+..----|-.+..|-++.++
T Consensus       265 ~aLvGGG----~~p~PGeIsLA----------H~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv  330 (490)
T COG0606         265 AALVGGG----GVPRPGEISLA----------HNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPARFQLV  330 (490)
T ss_pred             HHHhCCC----CCCCCCceeee----------cCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEh
Confidence            9999976    23333433322          23456778  66677889999988877765555567789999888888


Q ss_pred             Eee
Q psy4730        1482 FEC 1484 (1513)
Q Consensus      1482 FE~ 1484 (1513)
                      +-+
T Consensus       331 ~Am  333 (490)
T COG0606         331 AAM  333 (490)
T ss_pred             hhc
Confidence            854

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=94.00  E-value=0.031  Score=60.91  Aligned_cols=24  Identities=25%  Similarity=0.307  Sum_probs=20.9

Q ss_pred             HhcceEEEeccCCCCchHHHHHHH
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      ....-|.++|||||||||+++++.
T Consensus        26 ~~Gevv~iiGpSGSGKSTlLRclN   49 (240)
T COG1126          26 EKGEVVVIIGPSGSGKSTLLRCLN   49 (240)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHH
Confidence            445689999999999999999984

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.99  E-value=0.34  Score=62.04  Aligned_cols=45  Identities=16%  Similarity=0.258  Sum_probs=34.3

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+.||.+++.+ ..+.+-+++|+..+.+..++.+++..++..++..
T Consensus       149 ~~ifILaTt~~-~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~  193 (624)
T PRK14959        149 RVTFVLATTEP-HKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGR  193 (624)
T ss_pred             CEEEEEecCCh-hhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHH
Confidence            45666666543 3456678999999999999999999888887653

>PRK06835 DNA replication protein DnaC; Validated

Probab=93.99  E-value=0.063  Score=64.02  Aligned_cols=33  Identities=33%  Similarity=0.546  Sum_probs=26.3

Q ss_pred             HHHHHhcCCccceeccCCCccchHhHHHHHhcc
Q psy4730         721 FINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       721 ~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      +.+-+-..+.+++|.||+|+|||.++......+
T Consensus       175 f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l  207 (329)
T PRK06835        175 FIENFDKNNENLLFYGNTGTGKTFLSNCIAKEL  207 (329)
T ss_pred             HHHHHhccCCcEEEECCCCCcHHHHHHHHHHHH
Confidence            444444567899999999999999999887654

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.96  E-value=0.51  Score=57.64  Aligned_cols=44  Identities=14%  Similarity=0.197  Sum_probs=34.3

Q ss_pred             eEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         934 IIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       934 ~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ..+|.+++. +..+.+.+.+|+.++.+.+|+.+++..+...++..
T Consensus       139 ~~~Il~~~~-~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~  182 (367)
T PRK14970        139 AIFILATTE-KHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVK  182 (367)
T ss_pred             eEEEEEeCC-cccCCHHHHhcceeEecCCccHHHHHHHHHHHHHH
Confidence            345555443 46778889999999999999999999888887654

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.94  E-value=0.08  Score=61.73  Aligned_cols=125  Identities=20%  Similarity=0.321  Sum_probs=68.1

Q ss_pred             HHHHHHHhcc--eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccC
Q psy4730        1343 QVYEMILVRH--GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDG 1420 (1513)
Q Consensus      1343 qL~~~~~~~~--gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG 1420 (1513)
                      .||+.+....  ||+|+||||+|||-+.++.|...+.             .-+. +.-..+ .+.+.|.          |
T Consensus       175 ElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A-------------tFIr-vvgSEl-VqKYiGE----------G  229 (406)
T COG1222         175 ELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA-------------TFIR-VVGSEL-VQKYIGE----------G  229 (406)
T ss_pred             HHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc-------------eEEE-eccHHH-HHHHhcc----------c
Confidence            4677776665  9999999999999999998865442             2222 221111 3445552          2


Q ss_pred             HHHHHHHHhhc-cCCCCceEEEEcCCCChHHHHhhhcccCCC----Cc-eeecC-CCeeecCCCCeEEEeecCCCCCCcc
Q psy4730        1421 ILAKTFREMAV-STTPDRKWIMFDGPIDAVWIENMNTVLDDN----KK-LCLIN-GEIIKMSNTMNLIFECENLEFASPA 1493 (1513)
Q Consensus      1421 ~l~~~lR~~~~-~~~~~~~WivfDG~~d~~wiE~LNsvLDdn----~~-L~L~n-Ge~i~~~~~~~~iFE~~~l~~asPa 1493 (1513)
                        ++++|+... ........|.+|. +|+.=.-+.++-=...    |+ |-|-| =+=..-..|+++|+.|.-..-.=||
T Consensus       230 --aRlVRelF~lArekaPsIIFiDE-IDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPA  306 (406)
T COG1222         230 --ARLVRELFELAREKAPSIIFIDE-IDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPA  306 (406)
T ss_pred             --hHHHHHHHHHHhhcCCeEEEEec-hhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChh
Confidence              688888643 3344567777773 2222111111111000    00 00100 1113335688888888777766676


Q ss_pred             hh
Q psy4730        1494 TV 1495 (1513)
Q Consensus      1494 tv 1495 (1513)
                      .+
T Consensus       307 LL  308 (406)
T COG1222         307 LL  308 (406)
T ss_pred             hc
Confidence            53

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=93.94  E-value=0.44  Score=58.09  Aligned_cols=46  Identities=15%  Similarity=0.268  Sum_probs=31.9

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT 1402 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t 1402 (1513)
                      ..++|.||||+|||++++.+.+.+.......     +.++.+..+|+....
T Consensus        41 ~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~-----~~~~~~v~in~~~~~   86 (365)
T TIGR02928        41 SNVFIYGKTGTGKTAVTKYVMKELEEAAEDR-----DVRVVTVYVNCQILD   86 (365)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHHHHhhcc-----CCceEEEEEECCCCC
Confidence            5799999999999999999988876432110     112455667765544

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PLN02674 adenylate kinase

Probab=93.93  E-value=0.11  Score=59.06  Aligned_cols=99  Identities=16%  Similarity=0.175  Sum_probs=50.7

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
                      .-|+|+|||||||||..+.|++.++-..    .+++.  .--..+..++-.-.++-..++ .+.-=-|.+...++++...
T Consensus        32 ~~i~l~G~PGsGKgT~a~~La~~~~~~h----is~Gd--llR~~i~~~s~~g~~i~~~~~-~G~lvpd~iv~~lv~~~l~  104 (244)
T PLN02674         32 KRLILIGPPGSGKGTQSPIIKDEYCLCH----LATGD--MLRAAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDEAMK  104 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHcCCcE----EchhH--HHHHHHhccChhhHHHHHHHH-cCCccCHHHHHHHHHHHHh
Confidence            4699999999999999999998765310    00000  000001111111111111122 2333455666677766544


Q ss_pred             cCCCCceEEEEcC-CCChHHHHhhhccc
Q psy4730        1432 STTPDRKWIMFDG-PIDAVWIENMNTVL 1458 (1513)
Q Consensus      1432 ~~~~~~~WivfDG-~~d~~wiE~LNsvL 1458 (1513)
                      ..... .=+|+|| |-...-++.|...|
T Consensus       105 ~~~~~-~g~ilDGfPRt~~Qa~~l~~~l  131 (244)
T PLN02674        105 KPSCQ-KGFILDGFPRTVVQAQKLDEML  131 (244)
T ss_pred             CcCcC-CcEEEeCCCCCHHHHHHHHHHH
Confidence            33222 3367898 55555566655544

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=93.89  E-value=0.051  Score=64.09  Aligned_cols=33  Identities=33%  Similarity=0.501  Sum_probs=28.3

Q ss_pred             HHHHHHhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      |..++..+..++++|+|||||||+.+.|...+.
T Consensus       125 L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~  157 (299)
T TIGR02782       125 LREAVLARKNILVVGGTGSGKTTLANALLAEIA  157 (299)
T ss_pred             HHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            555666788999999999999999999987764

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=93.88  E-value=0.047  Score=49.41  Aligned_cols=22  Identities=36%  Similarity=0.531  Sum_probs=20.5

Q ss_pred             EEEeccCCCCchHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      |.+.|++||||||+.+.|++.+
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999999887

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=93.85  E-value=0.068  Score=54.89  Aligned_cols=36  Identities=22%  Similarity=0.124  Sum_probs=30.0

Q ss_pred             HHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1342 IQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1342 ~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .+|.+.+....-|.|.|+.|+||||+++.++++++.
T Consensus        13 ~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~   48 (133)
T TIGR00150        13 KAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI   48 (133)
T ss_pred             HHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            345555666778999999999999999999999864

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=93.80  E-value=0.049  Score=59.70  Aligned_cols=33  Identities=21%  Similarity=0.367  Sum_probs=27.2

Q ss_pred             HHHHHHhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      |..++..+..++++||+||||||+++.|...+.
T Consensus        18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~   50 (186)
T cd01130          18 LWLAVEARKNILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            344566778999999999999999999987654

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK06526 transposase; Provisional

Probab=93.74  E-value=0.049  Score=62.63  Aligned_cols=28  Identities=29%  Similarity=0.642  Sum_probs=23.6

Q ss_pred             hcCCccceeccCCCccchHhHHHHHhcc
Q psy4730         726 LQNDVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       726 ~~~~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      +..+.+++|+||||||||++...+...+
T Consensus        95 i~~~~nlll~Gp~GtGKThLa~al~~~a  122 (254)
T PRK06526         95 VTGKENVVFLGPPGTGKTHLAIGLGIRA  122 (254)
T ss_pred             hhcCceEEEEeCCCCchHHHHHHHHHHH
Confidence            4567899999999999999999886544

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.74  E-value=0.37  Score=62.20  Aligned_cols=45  Identities=9%  Similarity=0.123  Sum_probs=35.4

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+.||.+++.+ +.|++.+++|+..+.+..++.+.+......++..
T Consensus       149 ~~~fIl~t~~~-~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~  193 (576)
T PRK14965        149 HVKFIFATTEP-HKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQ  193 (576)
T ss_pred             CeEEEEEeCCh-hhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHH
Confidence            45566666544 5688999999999999999999998887777654

>KOG0652|consensus

Probab=93.72  E-value=0.2  Score=55.42  Aligned_cols=34  Identities=26%  Similarity=0.396  Sum_probs=27.5

Q ss_pred             HHHHHHHhcCCccceeccCCCccchHhHHHHHhc
Q psy4730         719 NFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLN  752 (1513)
Q Consensus       719 ~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~  752 (1513)
                      ..|-++-+..-+-||+.||||||||.+...|...
T Consensus       195 ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaq  228 (424)
T KOG0652|consen  195 EKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQ  228 (424)
T ss_pred             HHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHh
Confidence            3345555677789999999999999999988753

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=93.68  E-value=0.15  Score=63.24  Aligned_cols=95  Identities=22%  Similarity=0.278  Sum_probs=53.8

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC-h------hhccccccCCCCCCccCHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-M------GQLYGEFDSASHEWRDGILA 1423 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t-~------~eL~G~~~~~t~eW~DG~l~ 1423 (1513)
                      ...++++||+|+||||++-.||..+....+.       .+|-+...+|--.. .      .+..|.  |........-+.
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g-------~~V~li~~D~~r~~a~eqL~~~a~~~~v--p~~~~~~~~~l~  291 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGK-------KKVALITLDTYRIGAVEQLKTYAKIMGI--PVEVVYDPKELA  291 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-------CeEEEEECCccHHHHHHHHHHHHHHhCC--ceEccCCHHhHH
Confidence            4579999999999999999998877522111       12333334442111 1      122221  000111122234


Q ss_pred             HHHHHhhccCCCCceEEEEcCC----CChHHHHhhhcccC
Q psy4730        1424 KTFREMAVSTTPDRKWIMFDGP----IDAVWIENMNTVLD 1459 (1513)
Q Consensus      1424 ~~lR~~~~~~~~~~~WivfDG~----~d~~wiE~LNsvLD 1459 (1513)
                      ..+++.     ....+|+.|.+    .|+.-++.|..+++
T Consensus       292 ~~l~~~-----~~~DlVlIDt~G~~~~d~~~~~~L~~ll~  326 (424)
T PRK05703        292 KALEQL-----RDCDVILIDTAGRSQRDKRLIEELKALIE  326 (424)
T ss_pred             HHHHHh-----CCCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence            445443     23589999933    57778888888887

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=93.64  E-value=0.47  Score=57.79  Aligned_cols=26  Identities=31%  Similarity=0.259  Sum_probs=23.0

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .-|+++||+|+||||++.-||..+..
T Consensus       175 ~vi~lvGptGvGKTTT~aKLA~~~~~  200 (388)
T PRK12723        175 RVFILVGPTGVGKTTTIAKLAAIYGI  200 (388)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            47899999999999999999987753

>CHL00176 ftsH cell division protein; Validated

Probab=93.63  E-value=0.12  Score=67.11  Aligned_cols=123  Identities=15%  Similarity=0.209  Sum_probs=65.9

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
                      ...||+|+||||||||++.+.+|...+              +.+..+++..+. ..+.|.    +    ..-+..+++++
T Consensus       215 ~p~gVLL~GPpGTGKT~LAralA~e~~--------------~p~i~is~s~f~-~~~~g~----~----~~~vr~lF~~A  271 (638)
T CHL00176        215 IPKGVLLVGPPGTGKTLLAKAIAGEAE--------------VPFFSISGSEFV-EMFVGV----G----AARVRDLFKKA  271 (638)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhC--------------CCeeeccHHHHH-HHhhhh----h----HHHHHHHHHHH
Confidence            346999999999999999999986542              334444433221 111110    0    00122233333


Q ss_pred             hccCCCCceEEEEcCC-------------CChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhh
Q psy4730        1430 AVSTTPDRKWIMFDGP-------------IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVS 1496 (1513)
Q Consensus      1430 ~~~~~~~~~WivfDG~-------------~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvs 1496 (1513)
                      .   ...+..|++|..             .++.+-..||.+|..-      +|  +.-.+++.+|.-|.+.....||.+.
T Consensus       272 ~---~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~------dg--~~~~~~ViVIaaTN~~~~LD~ALlR  340 (638)
T CHL00176        272 K---ENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEM------DG--FKGNKGVIVIAATNRVDILDAALLR  340 (638)
T ss_pred             h---cCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhh------cc--ccCCCCeeEEEecCchHhhhhhhhc
Confidence            2   234568888842             1344555667665211      11  1113456677777776777777775


Q ss_pred             cc---EEEEeeCC
Q psy4730        1497 RV---GMIYFELK 1506 (1513)
Q Consensus      1497 Rc---g~v~~~~~ 1506 (1513)
                      ++   -.|+++.-
T Consensus       341 pGRFd~~I~v~lP  353 (638)
T CHL00176        341 PGRFDRQITVSLP  353 (638)
T ss_pred             cccCceEEEECCC
Confidence            32   34555543

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=93.60  E-value=0.47  Score=59.35  Aligned_cols=45  Identities=13%  Similarity=0.278  Sum_probs=35.1

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+.+|.+++. +..|.+.+.+|+.++.+.+++.+++......++..
T Consensus       151 ~~~~Il~t~~-~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~  195 (451)
T PRK06305        151 HVKFFLATTE-IHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQ  195 (451)
T ss_pred             CceEEEEeCC-hHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHH
Confidence            3455555543 35688999999999999999999999888877553

>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]

Probab=93.59  E-value=0.18  Score=61.27  Aligned_cols=122  Identities=13%  Similarity=0.187  Sum_probs=81.6

Q ss_pred             HHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCCCCCC
Q psy4730        1342 IQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSASHEW 1417 (1513)
Q Consensus      1342 ~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~t~eW 1417 (1513)
                      -++.-.-.+...|+|.|+||+||--+.+++...-.+    .       ......+|+.++.    -+||||+.       
T Consensus       237 ~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R----~-------~kPfV~~NCAAlPesLlESELFGHe-------  298 (550)
T COG3604         237 KEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPR----R-------DKPFVKLNCAALPESLLESELFGHE-------  298 (550)
T ss_pred             HHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcc----c-------CCCceeeeccccchHHHHHHHhccc-------
Confidence            334445567789999999999998887776544333    1       2456789999998    78999964       


Q ss_pred             ccCHHHHHHHHhh-ccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEee
Q psy4730        1418 RDGILAKTFREMA-VSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC 1484 (1513)
Q Consensus      1418 ~DG~l~~~lR~~~-~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~ 1484 (1513)
                       -|.||-++++-. .-+-.+.-=+.+|  |++..+.==-|=+||-+.-.=-+.+...|++  .+|+|..|
T Consensus       299 -KGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikV--DVRiIAAT  365 (550)
T COG3604         299 -KGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKV--DVRVIAAT  365 (550)
T ss_pred             -ccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEE--EEEEEecc
Confidence             377777765421 1111223457778  8998887777888886554444444444554  48888877

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=93.56  E-value=0.043  Score=58.59  Aligned_cols=29  Identities=34%  Similarity=0.304  Sum_probs=24.6

Q ss_pred             HHhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1348 ILVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1348 ~~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      +....-|.++|||||||||+.+++|..+.
T Consensus        28 ia~ge~vv~lGpSGcGKTTLLnl~AGf~~   56 (259)
T COG4525          28 IASGELVVVLGPSGCGKTTLLNLIAGFVT   56 (259)
T ss_pred             ecCCCEEEEEcCCCccHHHHHHHHhcCcC
Confidence            34566899999999999999999987664

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=93.54  E-value=0.32  Score=56.69  Aligned_cols=27  Identities=33%  Similarity=0.385  Sum_probs=23.5

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .+-++++||+|+||||++..||..+..
T Consensus        72 ~~vi~l~G~~G~GKTTt~akLA~~l~~   98 (272)
T TIGR00064        72 PNVILFVGVNGVGKTTTIAKLANKLKK   98 (272)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            357899999999999999999988754

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=93.53  E-value=0.063  Score=47.25  Aligned_cols=24  Identities=21%  Similarity=0.297  Sum_probs=20.8

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..+|.||+||||||++.++.-++-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L~   48 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVLY   48 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHc
Confidence            499999999999999998876653

>PRK03839 putative kinase; Provisional

Probab=93.48  E-value=0.046  Score=59.48  Aligned_cols=24  Identities=33%  Similarity=0.340  Sum_probs=22.1

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|+|+|+|||||||+.+.|++.++
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~   25 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLG   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            389999999999999999999875

>KOG0991|consensus

Probab=93.45  E-value=0.067  Score=58.44  Aligned_cols=27  Identities=33%  Similarity=0.288  Sum_probs=23.5

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+-+++-||||+||||++.+||..+
T Consensus        46 gnmP~liisGpPG~GKTTsi~~LAr~L   72 (333)
T KOG0991|consen   46 GNMPNLIISGPPGTGKTTSILCLAREL   72 (333)
T ss_pred             CCCCceEeeCCCCCchhhHHHHHHHHH
Confidence            344579999999999999999999876

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=93.45  E-value=0.13  Score=62.19  Aligned_cols=28  Identities=18%  Similarity=0.183  Sum_probs=23.7

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .+-.|++.|||||||||+++.|...+..
T Consensus       148 ~~GlilI~G~TGSGKTT~l~al~~~i~~  175 (372)
T TIGR02525       148 AAGLGLICGETGSGKSTLAASIYQHCGE  175 (372)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3456889999999999999999887754

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=93.42  E-value=0.17  Score=60.06  Aligned_cols=103  Identities=16%  Similarity=0.154  Sum_probs=0.0

Q ss_pred             HHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccC---
Q psy4730        1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDG--- 1420 (1513)
Q Consensus      1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG--- 1420 (1513)
                      |..++..+..++++||+||||||+++.|...+..           ....+.+=++..+...+ =....-......+|   
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~-----------~~~iv~ied~~El~~~~-~~~~~l~~~~~~~~~~~  204 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPK-----------DERIITIEDTREIFLPH-PNYVHLFYSKGGQGLAK  204 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCc-----------cccEEEEcCccccCCCC-CCEEEEEecCCCCCcCc


Q ss_pred             -----HHHHHHHHhhccCCCCceEEEEcCCCChHHHHhhhcccCCCCc-ee
Q psy4730        1421 -----ILAKTFREMAVSTTPDRKWIMFDGPIDAVWIENMNTVLDDNKK-LC 1465 (1513)
Q Consensus      1421 -----~l~~~lR~~~~~~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~-L~ 1465 (1513)
                           ++..++|..       ..||++|.+-+.+-.+.++.+...... ++
T Consensus       205 ~~~~~~l~~~Lr~~-------pd~ii~gE~r~~e~~~~l~a~~~g~~~~i~  248 (308)
T TIGR02788       205 VTPKDLLQSCLRMR-------PDRIILGELRGDEAFDFIRAVNTGHPGSIT  248 (308)
T ss_pred             cCHHHHHHHHhcCC-------CCeEEEeccCCHHHHHHHHHHhcCCCeEEE

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>KOG0727|consensus

Probab=93.41  E-value=0.11  Score=57.08  Aligned_cols=33  Identities=24%  Similarity=0.416  Sum_probs=27.4

Q ss_pred             HHHHHHHhc--ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1343 QVYEMILVR--HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1343 qL~~~~~~~--~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      +||..+...  +||++.||||||||.+.++.|...
T Consensus       179 ~ly~qigidpprgvllygppg~gktml~kava~~t  213 (408)
T KOG0727|consen  179 DLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT  213 (408)
T ss_pred             HHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence            577777665  499999999999999999887554

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=93.40  E-value=0.053  Score=53.36  Aligned_cols=22  Identities=32%  Similarity=0.412  Sum_probs=20.1

Q ss_pred             cceEEEeccCCCCchHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      ...+.|+|||||||||+.+++.
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh
Confidence            4689999999999999999985

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=93.39  E-value=0.039  Score=65.65  Aligned_cols=26  Identities=31%  Similarity=0.425  Sum_probs=21.5

Q ss_pred             hcce--EEEeccCCCCchHHHHHHHHHH
Q psy4730        1350 VRHG--LMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1350 ~~~g--vilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      .+.|  +-|+|||||||||+++++|..-
T Consensus        28 i~~Gef~~lLGPSGcGKTTlLR~IAGfe   55 (352)
T COG3842          28 IKKGEFVTLLGPSGCGKTTLLRMIAGFE   55 (352)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3455  7799999999999999998553

>PF13245 AAA_19: Part of AAA domain

Probab=93.37  E-value=0.087  Score=48.69  Aligned_cols=24  Identities=33%  Similarity=0.293  Sum_probs=17.1

Q ss_pred             ceEEEeccCCCCch-HHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKT-TAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKT-t~~~~L~~~~ 1375 (1513)
                      +-++|.|||||||| ++.+.++..+
T Consensus        11 ~~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen   11 PLFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            34555999999999 5556655555

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=93.36  E-value=0.046  Score=59.93  Aligned_cols=25  Identities=20%  Similarity=0.224  Sum_probs=21.6

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|+|+||+||||||+.+.|+..+.
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~~   27 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQREQ   27 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCC
Confidence            4689999999999999999976543

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=93.31  E-value=0.087  Score=65.24  Aligned_cols=27  Identities=19%  Similarity=0.287  Sum_probs=23.7

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .++++|.||+|+|||.+.+.++..+..
T Consensus       136 ~n~l~l~G~~G~GKThL~~ai~~~l~~  162 (405)
T TIGR00362       136 YNPLFIYGGVGLGKTHLLHAIGNEILE  162 (405)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence            358999999999999999999887754

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=93.31  E-value=0.66  Score=59.50  Aligned_cols=44  Identities=9%  Similarity=0.154  Sum_probs=34.3

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLD  977 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~  977 (1513)
                      .+.||.++.-+ ..+++.+.+|+..+.+..++.+.+......++.
T Consensus       149 ~~vfI~~tte~-~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~  192 (563)
T PRK06647        149 YIVFIFATTEV-HKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCL  192 (563)
T ss_pred             CEEEEEecCCh-HHhHHHHHHhceEEEecCCCHHHHHHHHHHHHH
Confidence            45566555333 468899999999999999999999888877654

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=93.31  E-value=0.054  Score=64.84  Aligned_cols=32  Identities=25%  Similarity=0.359  Sum_probs=26.9

Q ss_pred             HHHHHhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1345 YEMILVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1345 ~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..+++.+..|+++|||||||||+.++|...+.
T Consensus       156 ~~~v~~~~nilI~G~tGSGKTTll~aLl~~i~  187 (344)
T PRK13851        156 HACVVGRLTMLLCGPTGSGKTTMSKTLISAIP  187 (344)
T ss_pred             HHHHHcCCeEEEECCCCccHHHHHHHHHcccC
Confidence            33466778999999999999999999987664

>KOG1970|consensus

Probab=93.30  E-value=0.12  Score=63.14  Aligned_cols=45  Identities=22%  Similarity=0.200  Sum_probs=32.5

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhcccc
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGE 1409 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~ 1409 (1513)
                      +-.+|.||+||||||++++|++.++-             .-..-+||-.....+.++.
T Consensus       111 ~iLLltGPsGcGKSTtvkvLskelg~-------------~~~Ew~Npi~~~~~~~~h~  155 (634)
T KOG1970|consen  111 RILLLTGPSGCGKSTTVKVLSKELGY-------------QLIEWSNPINLKEPENLHN  155 (634)
T ss_pred             eEEEEeCCCCCCchhHHHHHHHhhCc-------------eeeeecCCccccccccccc
Confidence            46788999999999999999998873             1233466666555555443

>KOG0740|consensus

Probab=93.30  E-value=0.39  Score=58.37  Aligned_cols=46  Identities=15%  Similarity=0.098  Sum_probs=37.8

Q ss_pred             ceEEEEeecCCCCCCChhhhccceE-eecCCCChHHHHHHHHHHhhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNI-ISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~-~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      .+.++||.|-|+ .++..++|||.= +|++.|+.++...++..+|..+
T Consensus       290 rvlvigaTN~P~-e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~  336 (428)
T KOG0740|consen  290 RVLVIGATNRPW-ELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQ  336 (428)
T ss_pred             eEEEEecCCCch-HHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhC
Confidence            678889999875 366667777764 8899999999999999998765

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=93.29  E-value=0.064  Score=54.76  Aligned_cols=28  Identities=32%  Similarity=0.367  Sum_probs=21.2

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .+..++|.||||+|||++++.+++.+..
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~   30 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNA   30 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence            4568999999999999999999988764

>KOG0739|consensus

Probab=93.29  E-value=0.14  Score=57.90  Aligned_cols=45  Identities=13%  Similarity=0.113  Sum_probs=35.8

Q ss_pred             ceEEEEeecCCCCCCChhhhccceE-eecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNI-ISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~-~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+..++|+|-|+. ++..++|||-- |||+-|....-.++|.--|..
T Consensus       269 gvLVLgATNiPw~-LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~  314 (439)
T KOG0739|consen  269 GVLVLGATNIPWV-LDSAIRRRFEKRIYIPLPEAHARARMFKLHLGD  314 (439)
T ss_pred             ceEEEecCCCchh-HHHHHHHHhhcceeccCCcHHHhhhhheeccCC
Confidence            4667788888863 67778888876 999999999999988876543

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

Probab=93.27  E-value=0.082  Score=67.79  Aligned_cols=145  Identities=17%  Similarity=0.268  Sum_probs=0.0

Q ss_pred             cceeccCCCccchHhHHHHHhccCcCcccceeeccccccChhHHHHHHHHHhhhhccCCCCCCCC-----ceEEEEeccc
Q psy4730         731 PMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYGPAMG-----KKYIVFIAGS  805 (1513)
Q Consensus       731 ~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t~~~~~q~~i~~~~~~~~~~~~~~~~~-----~~~~~f~~~~  805 (1513)
                      ++||+|.||+|||.+.+.+..-++..-|..-..+=.+..+++.+.+               +.-|     ...++..+|-
T Consensus       321 nILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd---------------~~tge~~LeaGALVlAD~G  385 (682)
T COG1241         321 HILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRD---------------KVTGEWVLEAGALVLADGG  385 (682)
T ss_pred             eEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEc---------------cCCCeEEEeCCEEEEecCC


Q ss_pred             ccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCcCCCCCChhHHHHHHHHHHhhhcccchhHHHHHHHH
Q psy4730         806 LKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQ  885 (1513)
Q Consensus       806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  885 (1513)
                      +                                                                               
T Consensus       386 v-------------------------------------------------------------------------------  386 (682)
T COG1241         386 V-------------------------------------------------------------------------------  386 (682)
T ss_pred             E-------------------------------------------------------------------------------


Q ss_pred             HHHHHhhccC-CCCCccCCCCChHHHHHHHHhcCCccccCCceeeeec-ceEEEEeecCC------------CCCCChhh
Q psy4730         886 VYEMILDDLN-MPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLV-DIIYITAMIPT------------MNTITGRL  951 (1513)
Q Consensus       886 ~~~~~~dd~n-~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~-~~~~~~a~~~~------------~~~~~~r~  951 (1513)
                         +++|++. |+..|       ---|...++.+..---+-.-.-.+. ...++||+||.            ...+|+-|
T Consensus       387 ---~cIDEfdKm~~~d-------r~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~l  456 (682)
T COG1241         387 ---CCIDEFDKMNEED-------RVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPL  456 (682)
T ss_pred             ---EEEEeccCCChHH-------HHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhH


Q ss_pred             hccceE--eecCCCChHHHHHHHHHHhhhh
Q psy4730         952 LRHMNI--ISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       952 ~~~f~~--~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      ++||-+  +..|.|+.+.-..|..-++..|
T Consensus       457 LSRFDLifvl~D~~d~~~D~~ia~hil~~h  486 (682)
T COG1241         457 LSRFDLIFVLKDDPDEEKDEEIAEHILDKH  486 (682)
T ss_pred             HhhCCeeEEecCCCCccchHHHHHHHHHHH

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=93.27  E-value=0.05  Score=60.72  Aligned_cols=25  Identities=28%  Similarity=0.267  Sum_probs=21.1

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      ...-|.|+|||||||||+.+++...
T Consensus        30 ~Ge~vaI~GpSGSGKSTLLniig~l   54 (226)
T COG1136          30 AGEFVAIVGPSGSGKSTLLNLLGGL   54 (226)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3457999999999999999998644

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=93.23  E-value=0.051  Score=59.05  Aligned_cols=24  Identities=33%  Similarity=0.293  Sum_probs=21.7

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -++|+|||||||||+.+.|+..+.
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~~~   26 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARARLA   26 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            578999999999999999988764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=93.23  E-value=0.16  Score=55.87  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=21.3

Q ss_pred             EEEeccCCCCchHHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      |+|+|+|||||||+.+.|++.++
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~   24 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYG   24 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            78999999999999999998865

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK10536 hypothetical protein; Provisional

Probab=93.22  E-value=0.14  Score=58.22  Aligned_cols=146  Identities=14%  Similarity=0.071  Sum_probs=83.7

Q ss_pred             HHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCC-----CccCH
Q psy4730        1347 MILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHE-----WRDGI 1421 (1513)
Q Consensus      1347 ~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~e-----W~DG~ 1421 (1513)
                      ++..+.-|++.||+|||||++...++...-. .+         .+...+|....++..|.+|++ |-+.+     |--.+
T Consensus        70 al~~~~lV~i~G~aGTGKT~La~a~a~~~l~-~~---------~~~kIiI~RP~v~~ge~LGfL-PG~~~eK~~p~~~pi  138 (262)
T PRK10536         70 AIESKQLIFATGEAGCGKTWISAAKAAEALI-HK---------DVDRIIVTRPVLQADEDLGFL-PGDIAEKFAPYFRPV  138 (262)
T ss_pred             HHhcCCeEEEECCCCCCHHHHHHHHHHHHHh-cC---------CeeEEEEeCCCCCchhhhCcC-CCCHHHHHHHHHHHH
Confidence            3444678999999999999999988763210 11         133344444556788989965 43321     43222


Q ss_pred             HHHH--------HHHhh---------------ccCCCCceEEEEcC--CCChHHHHhhhcccCCCCce-eecCCCeeecC
Q psy4730        1422 LAKT--------FREMA---------------VSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKL-CLINGEIIKMS 1475 (1513)
Q Consensus      1422 l~~~--------lR~~~---------------~~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L-~L~nGe~i~~~ 1475 (1513)
                      ...+        +++..               ...+-...+||+|-  .+++.-+..+.|-+.+|..+ .+.+-..|-.|
T Consensus       139 ~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~v~~GD~~QiD~p  218 (262)
T PRK10536        139 YDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQCDLP  218 (262)
T ss_pred             HHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhcCCCCEEEEeCChhhccCC
Confidence            2111        11110               11233568999994  56887777777777777554 45555667766


Q ss_pred             CCCeEEEeecCCCCCCcc--hhhccEEEEeeCCCC
Q psy4730        1476 NTMNLIFECENLEFASPA--TVSRVGMIYFELKCI 1508 (1513)
Q Consensus      1476 ~~~~~iFE~~~l~~asPa--tvsRcg~v~~~~~~~ 1508 (1513)
                      +..     +.-|.+|.-.  -...+|+|+|+.+++
T Consensus       219 ~~~-----~sGL~~~~~~~k~~~~~~~i~l~~~d~  248 (262)
T PRK10536        219 RGV-----KSGLSDALERFEEDEMVGIVRFGKEDC  248 (262)
T ss_pred             CCC-----CCCHHHHHHHhCCCCceEEEEEecCce
Confidence            421     2223322221  145688888886553

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=93.20  E-value=0.14  Score=65.22  Aligned_cols=26  Identities=27%  Similarity=0.417  Sum_probs=22.7

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ...|++|+||||||||++.+.++...
T Consensus        87 ~~~giLL~GppGtGKT~la~alA~~~  112 (495)
T TIGR01241        87 IPKGVLLVGPPGTGKTLLAKAVAGEA  112 (495)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHc
Confidence            34599999999999999999998654

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>KOG1534|consensus

Probab=93.16  E-value=0.075  Score=57.27  Aligned_cols=30  Identities=20%  Similarity=0.323  Sum_probs=26.2

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAA 1380 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~ 1380 (1513)
                      +.++++.||+||||||-+..+-.....+++
T Consensus         3 ~ya~lV~GpAgSGKSTyC~~~~~h~e~~gR   32 (273)
T KOG1534|consen    3 RYAQLVMGPAGSGKSTYCSSMYEHCETVGR   32 (273)
T ss_pred             ceeEEEEccCCCCcchHHHHHHHHHHhhCc
Confidence            568999999999999999999888776654

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=93.16  E-value=0.067  Score=66.68  Aligned_cols=123  Identities=15%  Similarity=0.192  Sum_probs=66.1

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
                      ++++|+||+|+|||.+.++++..+.....         ...+..++...+ ..++...+.       .|-......... 
T Consensus       131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~---------~~~v~yi~~~~f-~~~~~~~~~-------~~~~~~f~~~~~-  192 (440)
T PRK14088        131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEP---------DLRVMYITSEKF-LNDLVDSMK-------EGKLNEFREKYR-  192 (440)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHHHhCC---------CCeEEEEEHHHH-HHHHHHHHh-------cccHHHHHHHHH-
Confidence            57999999999999999999987653211         122333332211 222222221       111111111110 


Q ss_pred             cCCCCceEEEEcCCC---C-----hHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccE---E
Q psy4730        1432 STTPDRKWIMFDGPI---D-----AVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVG---M 1500 (1513)
Q Consensus      1432 ~~~~~~~WivfDG~~---d-----~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg---~ 1500 (1513)
                         .....+++|.+=   +     ....+-+|.+.+.++.+.+.+..    +|        .++....|..+||++   +
T Consensus       193 ---~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~----~p--------~~l~~l~~rL~SR~~~gl~  257 (440)
T PRK14088        193 ---KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR----EP--------QKLSEFQDRLVSRFQMGLV  257 (440)
T ss_pred             ---hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCC----CH--------HHHHHHHHHHhhHHhcCce
Confidence               124789999542   2     23555667776665544443221    11        245567788999987   6


Q ss_pred             EEeeCCC
Q psy4730        1501 IYFELKC 1507 (1513)
Q Consensus      1501 v~~~~~~ 1507 (1513)
                      +.+++-+
T Consensus       258 v~i~~pd  264 (440)
T PRK14088        258 AKLEPPD  264 (440)
T ss_pred             EeeCCCC
Confidence            6666654

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=93.14  E-value=0.065  Score=58.30  Aligned_cols=88  Identities=19%  Similarity=0.297  Sum_probs=54.6

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHH
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFRE 1428 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~ 1428 (1513)
                      ....+++|.||||+|||.+...++..+-. .+.        .+.+       ++..+|+..+..   .+.+|-..+.+++
T Consensus        45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~--------~v~f-------~~~~~L~~~l~~---~~~~~~~~~~~~~  105 (178)
T PF01695_consen   45 ENGENLILYGPPGTGKTHLAVAIANEAIR-KGY--------SVLF-------ITASDLLDELKQ---SRSDGSYEELLKR  105 (178)
T ss_dssp             SC--EEEEEESTTSSHHHHHHHHHHHHHH-TT----------EEE-------EEHHHHHHHHHC---CHCCTTHCHHHHH
T ss_pred             ccCeEEEEEhhHhHHHHHHHHHHHHHhcc-CCc--------ceeE-------eecCceeccccc---cccccchhhhcCc
Confidence            45679999999999999999999876544 111        1222       245677776653   3556666666666


Q ss_pred             hhccCCCCceEEEEc--C--CCChHHHHhhhcccCC
Q psy4730        1429 MAVSTTPDRKWIMFD--G--PIDAVWIENMNTVLDD 1460 (1513)
Q Consensus      1429 ~~~~~~~~~~WivfD--G--~~d~~wiE~LNsvLDd 1460 (1513)
                      ...     ..-+|+|  |  +.+....+-|-.++|.
T Consensus       106 l~~-----~dlLilDDlG~~~~~~~~~~~l~~ii~~  136 (178)
T PF01695_consen  106 LKR-----VDLLILDDLGYEPLSEWEAELLFEIIDE  136 (178)
T ss_dssp             HHT-----SSCEEEETCTSS---HHHHHCTHHHHHH
T ss_pred             ccc-----ccEecccccceeeecccccccchhhhhH
Confidence            533     2778999  4  4556667777777653

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>KOG1533|consensus

Probab=93.11  E-value=0.081  Score=58.01  Aligned_cols=29  Identities=28%  Similarity=0.421  Sum_probs=25.9

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAA 1380 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~ 1380 (1513)
                      -|.+++|||||||||-+....+.++.+++
T Consensus         3 fgqvVIGPPgSGKsTYc~g~~~fls~~gr   31 (290)
T KOG1533|consen    3 FGQVVIGPPGSGKSTYCNGMSQFLSAIGR   31 (290)
T ss_pred             cceEEEcCCCCCccchhhhHHHHHHHhCC
Confidence            48899999999999999999988887765

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.09  E-value=0.86  Score=59.17  Aligned_cols=44  Identities=2%  Similarity=0.190  Sum_probs=32.8

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLD  977 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~  977 (1513)
                      ++.||.+++.+. .+.+-+.+|+..+.+..++.+++......+..
T Consensus       151 ~tvfIL~t~~~~-~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~  194 (620)
T PRK14948        151 RVVFVLATTDPQ-RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAE  194 (620)
T ss_pred             CeEEEEEeCChh-hhhHHHHhheeEEEecCCCHHHHHHHHHHHHH
Confidence            456666665544 37778999999999999999888776666543

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=93.08  E-value=0.19  Score=60.23  Aligned_cols=97  Identities=15%  Similarity=0.115  Sum_probs=54.4

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC-h------hhcccc-ccCCCCCCccCH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-M------GQLYGE-FDSASHEWRDGI 1421 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t-~------~eL~G~-~~~~t~eW~DG~ 1421 (1513)
                      ...-++++||+||||||++..|+..+..-+         .+|-+...+|--.. .      .+..|- +-..   -...-
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g---------~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~---~dp~d  272 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN---------RTVGFITTDTFRSGAVEQFQGYADKLDVELIVA---TSPAE  272 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---------CeEEEEeCCccCccHHHHHHHHhhcCCCCEEec---CCHHH
Confidence            356889999999999999999987653211         12334444443321 1      111221 0000   01112


Q ss_pred             HHHHHHHhhccCCCCceEEEEc--C--CCChHHHHhhhcccCC
Q psy4730        1422 LAKTFREMAVSTTPDRKWIMFD--G--PIDAVWIENMNTVLDD 1460 (1513)
Q Consensus      1422 l~~~lR~~~~~~~~~~~WivfD--G--~~d~~wiE~LNsvLDd 1460 (1513)
                      +..+++....  ......|+.|  |  |.|..+++-|..+++.
T Consensus       273 L~~al~~l~~--~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~  313 (407)
T PRK12726        273 LEEAVQYMTY--VNCVDHILIDTVGRNYLAEESVSEISAYTDV  313 (407)
T ss_pred             HHHHHHHHHh--cCCCCEEEEECCCCCccCHHHHHHHHHHhhc
Confidence            2333433321  1235899999  3  4688999999888764

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=93.04  E-value=0.085  Score=62.71  Aligned_cols=32  Identities=19%  Similarity=0.417  Sum_probs=27.8

Q ss_pred             HHHHHHhcceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      |..++..+..++++|+|||||||+.+.|+..+
T Consensus       141 L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~  172 (319)
T PRK13894        141 IIAAVRAHRNILVIGGTGSGKTTLVNAIINEM  172 (319)
T ss_pred             HHHHHHcCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            45567788899999999999999999998765

>PRK00131 aroK shikimate kinase; Reviewed

Probab=93.02  E-value=0.058  Score=58.04  Aligned_cols=26  Identities=27%  Similarity=0.296  Sum_probs=23.7

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ...|+|+|+|||||||+.+.|++.++
T Consensus         4 ~~~i~l~G~~GsGKstla~~La~~l~   29 (175)
T PRK00131          4 GPNIVLIGFMGAGKSTIGRLLAKRLG   29 (175)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence            45899999999999999999999875

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=92.99  E-value=0.064  Score=56.50  Aligned_cols=24  Identities=33%  Similarity=0.421  Sum_probs=21.9

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .|+|+|++||||||+.+.|++.++
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~   24 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALG   24 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhC
Confidence            379999999999999999998875

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=92.98  E-value=0.076  Score=62.65  Aligned_cols=25  Identities=32%  Similarity=0.436  Sum_probs=22.7

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..|+|+||||||||++...|++.++
T Consensus         5 ~~i~i~GptgsGKt~la~~la~~~~   29 (307)
T PRK00091          5 KVIVIVGPTASGKTALAIELAKRLN   29 (307)
T ss_pred             eEEEEECCCCcCHHHHHHHHHHhCC
Confidence            4789999999999999999998865

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=92.95  E-value=0.77  Score=59.53  Aligned_cols=44  Identities=11%  Similarity=0.213  Sum_probs=32.4

Q ss_pred             eEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         934 IIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       934 ~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      +.||.+++. ...+.+.+.+|+..+.+..++..++..+...+...
T Consensus       151 tv~Il~t~~-~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~  194 (585)
T PRK14950        151 AIFILATTE-VHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAA  194 (585)
T ss_pred             eEEEEEeCC-hhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHH
Confidence            344444432 34577889999999999999999988888876543

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=92.94  E-value=0.05  Score=58.14  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.7

Q ss_pred             EEEeccCCCCchHHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      |+|+||+||||||+.+.|+..++
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~   23 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLG   23 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcC
Confidence            57899999999999999998864

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=92.94  E-value=0.084  Score=63.27  Aligned_cols=39  Identities=26%  Similarity=0.515  Sum_probs=34.2

Q ss_pred             hHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCc
Q psy4730         717 MQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSK  755 (1513)
Q Consensus       717 ~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~  755 (1513)
                      ....++..+++.+++++++||||||||+++..++..++.
T Consensus       150 ~~~~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i~~  188 (344)
T PRK13851        150 DLEAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAIPP  188 (344)
T ss_pred             HHHHHHHHHHHcCCeEEEECCCCccHHHHHHHHHcccCC
Confidence            356789999999999999999999999999999876643

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=92.93  E-value=0.064  Score=55.68  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=20.0

Q ss_pred             EEEeccCCCCchHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      |.|+|||||||||+.+.|++.+
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~   23 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEF   23 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcC
Confidence            7899999999999999998764

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=92.92  E-value=0.19  Score=60.68  Aligned_cols=70  Identities=19%  Similarity=0.335  Sum_probs=44.9

Q ss_pred             HHhhccC-CCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC--CCCCC-hhhhcc--ceEeecCC
Q psy4730         889 MILDDLN-MPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT--MNTIT-GRLLRH--MNIISIDS  962 (1513)
Q Consensus       889 ~~~dd~n-~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~--~~~~~-~r~~~~--f~~~~~~~  962 (1513)
                      +|+|++. ||.       +..|-|=.++|+|.+.-.+. ......|+.+++|.+-.  +.-+. .-|++|  +..+.+|+
T Consensus       177 LfLDEI~~LP~-------~~Q~kLl~~le~g~~~rvG~-~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPp  248 (403)
T COG1221         177 LFLDEIHRLPP-------EGQEKLLRVLEEGEYRRVGG-SQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPP  248 (403)
T ss_pred             EehhhhhhCCH-------hHHHHHHHHHHcCceEecCC-CCCcCCCceeeeccccCHHHHHHhhcchhhhhcCceecCCC
Confidence            5678887 554       34677778888888876665 55666799999998875  22222 244443  34455655


Q ss_pred             CChH
Q psy4730         963 FNEA  966 (1513)
Q Consensus       963 ~~~~  966 (1513)
                      ....
T Consensus       249 LrER  252 (403)
T COG1221         249 LRER  252 (403)
T ss_pred             hhhc
Confidence            5444

>PHA02624 large T antigen; Provisional

Probab=92.89  E-value=0.34  Score=61.05  Aligned_cols=60  Identities=17%  Similarity=0.084  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHcCccc--cHHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1317 ELIEQIKINLAKRNAQA--TDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1317 ~l~~~i~~~~~~~~l~~--~~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .+..-++-++--.++.+  ...|..-+-.+..-+-.++.+++.||+||||||+...|++.++
T Consensus       395 ~i~~fl~gv~~~q~l~~~~~~~~~~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~  456 (647)
T PHA02624        395 DILQYMAGVAWLHCLLPNFDDVIYDILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCG  456 (647)
T ss_pred             HHHHHHHHHHHHhccchhhHHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            33444443333555552  2344444444444456678999999999999999999999884

>PRK13764 ATPase; Provisional

Probab=92.87  E-value=0.24  Score=63.22  Aligned_cols=29  Identities=31%  Similarity=0.425  Sum_probs=25.6

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      ..+.+|++.|||||||||+.+.|+..+..
T Consensus       255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~~  283 (602)
T PRK13764        255 ERAEGILIAGAPGAGKSTFAQALAEFYAD  283 (602)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            45789999999999999999999988763

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=92.83  E-value=0.079  Score=60.38  Aligned_cols=38  Identities=24%  Similarity=0.244  Sum_probs=24.8

Q ss_pred             EeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC
Q psy4730        1356 VVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT 1402 (1513)
Q Consensus      1356 lvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t 1402 (1513)
                      ++||+||||||.++.+.+.+...+.         ++.+.=++|.+-.
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~~---------~~~~vNLDPa~~~   38 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNGR---------DVYIVNLDPAVEN   38 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT-S----------EEEEE--TT-S-
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccC---------CceEEEcchHhcc
Confidence            5899999999999999998876432         2444555666553

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK14531 adenylate kinase; Provisional

Probab=92.77  E-value=0.076  Score=58.06  Aligned_cols=25  Identities=24%  Similarity=0.287  Sum_probs=22.6

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|+++|+|||||||..+.|++.++
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g   27 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHG   27 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4589999999999999999998875

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=92.77  E-value=0.55  Score=52.75  Aligned_cols=81  Identities=7%  Similarity=0.144  Sum_probs=40.1

Q ss_pred             HHHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEee-cCC----CCCCChhhhccceEeecCC
Q psy4730         888 EMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAM-IPT----MNTITGRLLRHMNIISIDS  962 (1513)
Q Consensus       888 ~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~-~~~----~~~~~~r~~~~f~~~~~~~  962 (1513)
                      .+++||+.............+..|+.++++..-          -.++.++.+. ..+    -..-.+.+..++..+.+++
T Consensus       121 iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~  190 (234)
T PF01637_consen  121 IIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS----------QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKP  190 (234)
T ss_dssp             EEEEETGGGGGBCTTTTHHHHHHHHHHHHH--------------TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE--
T ss_pred             EEEEecHHHHhhcccchHHHHHHHHHHHhhccc----------cCCceEEEECCchHHHHHhhcccCccccccceEEEee
Confidence            356688885542112334556777777765111          1123333222 221    1244555777888899999


Q ss_pred             CChHHHHHHHHHHhhh
Q psy4730         963 FNEATLSKIFTSVLDW  978 (1513)
Q Consensus       963 ~~~~~l~~i~~~~l~~  978 (1513)
                      .+.++...++...+..
T Consensus       191 l~~~e~~~~~~~~~~~  206 (234)
T PF01637_consen  191 LSKEEAREFLKELFKE  206 (234)
T ss_dssp             --HHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999998888886543

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=92.75  E-value=0.72  Score=56.53  Aligned_cols=37  Identities=5%  Similarity=0.169  Sum_probs=28.9

Q ss_pred             EEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHH
Q psy4730         935 IYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFT  973 (1513)
Q Consensus       935 ~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~  973 (1513)
                      .+++|.+|  ..+.|-+++|+..+++.+|+.+.+.....
T Consensus       150 fIL~a~~~--~~llpTIrSRc~~i~f~~~~~~~i~~~L~  186 (394)
T PRK07940        150 WLLCAPSP--EDVLPTIRSRCRHVALRTPSVEAVAEVLV  186 (394)
T ss_pred             EEEEECCh--HHChHHHHhhCeEEECCCCCHHHHHHHHH
Confidence            44455553  56789999999999999999998776665

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]

Probab=92.73  E-value=0.19  Score=60.28  Aligned_cols=138  Identities=21%  Similarity=0.278  Sum_probs=88.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccc------------------------cceeEEEe-cCCCCChhhc
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKE------------------------FKTGYKII-NPKSITMGQL 1406 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~------------------------~~~~~~~i-np~~~t~~eL 1406 (1513)
                      -||+|-|+-|.||||+.+.|+..|-...........|                        ....+..+ -|-.-|-+-+
T Consensus        39 ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrv  118 (423)
T COG1239          39 GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRL  118 (423)
T ss_pred             ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhh
Confidence            4999999999999999999998876543211110010                        01111223 3444444459


Q ss_pred             cccccCCC------CCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCC
Q psy4730        1407 YGEFDSAS------HEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTM 1478 (1513)
Q Consensus      1407 ~G~~~~~t------~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~ 1478 (1513)
                      .|++|+..      ..++-|+|.++=|          -.+-+|  +.+|+.....|-.++.....-.=..|-.|..|-++
T Consensus       119 vGslDi~ka~~~g~~af~PGlLa~AnR----------GIlYvDEvnlL~d~lvd~LLd~aaeG~n~vereGisi~hpa~f  188 (423)
T COG1239         119 VGSLDIEKALEEGPKAFQPGLLARANR----------GILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPARF  188 (423)
T ss_pred             ccccCHHHHHhcCccccCCcchhhccC----------CEEEEeccccccHHHHHHHHHHHHhCCceeeeCceeeccCccE
Confidence            99999732      2377777766544          567779  78899888888888877655555678888877664


Q ss_pred             eEEEeecCC--CCCCcchhhccEE
Q psy4730        1479 NLIFECENL--EFASPATVSRVGM 1500 (1513)
Q Consensus      1479 ~~iFE~~~l--~~asPatvsRcg~ 1500 (1513)
                      - +.-|.|-  ....|-..-|.|+
T Consensus       189 v-ligTmNPEeGeLrpqLlDRfg~  211 (423)
T COG1239         189 L-LIGTMNPEEGELRPQLLDRFGL  211 (423)
T ss_pred             E-EEeecCccccccchhhHhhhcc
Confidence            4 4445444  3355666666655

>PRK07132 DNA polymerase III subunit delta'; Validated

Probab=92.68  E-value=0.64  Score=54.74  Aligned_cols=128  Identities=9%  Similarity=0.156  Sum_probs=76.9

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHH
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFRE 1428 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~ 1428 (1513)
                      +..|+.+++|+.|.||++..+.+++++.-..... ...+..+-.+..++|              .+..  .+  ..-+|+
T Consensus        16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~-~~~~~~p~n~~~~d~--------------~g~~--i~--vd~Ir~   76 (299)
T PRK07132         16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITN-LNEQELPANIILFDI--------------FDKD--LS--KSEFLS   76 (299)
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCC-CCCCCCCcceEEecc--------------CCCc--CC--HHHHHH
Confidence            4578999999999999999999998874211000 000000112222221              1100  11  233444


Q ss_pred             hhc----cC--CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEE
Q psy4730        1429 MAV----ST--TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIY 1502 (1513)
Q Consensus      1429 ~~~----~~--~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~ 1502 (1513)
                      .+.    .+  .+.++-+|+|+. |..-.++.|++|.     +|-+     .|+++.+||-+++....-|+-.|||-+|.
T Consensus        77 l~~~~~~~~~~~~~~KvvII~~~-e~m~~~a~NaLLK-----~LEE-----Pp~~t~~il~~~~~~kll~TI~SRc~~~~  145 (299)
T PRK07132         77 AINKLYFSSFVQSQKKILIIKNI-EKTSNSLLNALLK-----TIEE-----PPKDTYFLLTTKNINKVLPTIVSRCQVFN  145 (299)
T ss_pred             HHHHhccCCcccCCceEEEEecc-cccCHHHHHHHHH-----HhhC-----CCCCeEEEEEeCChHhChHHHHhCeEEEE
Confidence            432    22  147889999983 3333455565552     1111     57888899988888888888899999999


Q ss_pred             eeCC
Q psy4730        1503 FELK 1506 (1513)
Q Consensus      1503 ~~~~ 1506 (1513)
                      |.+-
T Consensus       146 f~~l  149 (299)
T PRK07132        146 VKEP  149 (299)
T ss_pred             CCCC
Confidence            8764

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=92.67  E-value=0.13  Score=59.66  Aligned_cols=33  Identities=27%  Similarity=0.276  Sum_probs=24.7

Q ss_pred             HHHHHHhcc-eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1344 VYEMILVRH-GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1344 L~~~~~~~~-gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      +...+..+. -++|+||+|+||||+++.+++.+.
T Consensus        35 l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        35 LEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             HHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            333344444 588999999999999999976654

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=92.62  E-value=0.076  Score=57.65  Aligned_cols=24  Identities=29%  Similarity=0.462  Sum_probs=21.6

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|+|+|||||||||..+.|++.++
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~   25 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLG   25 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            389999999999999999998854

>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies

Probab=92.60  E-value=0.17  Score=56.31  Aligned_cols=51  Identities=27%  Similarity=0.287  Sum_probs=33.9

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccc
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYG 1408 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G 1408 (1513)
                      ...+++.|.||||||++++.++..+-...       ....++++.++|+......+-+
T Consensus        38 ~~h~li~G~tgsGKS~~l~~ll~~l~~~~-------~p~~~~l~iiD~k~~~l~~~~~   88 (205)
T PF01580_consen   38 NPHLLIAGATGSGKSTLLRTLLLSLALTY-------SPDDVQLYIIDPKGSDLAPLAD   88 (205)
T ss_dssp             S-SEEEE--TTSSHHHHHHHHHHHHHTT---------TTTEEEEEE-TTSSCCGGGTT
T ss_pred             CceEEEEcCCCCCccHHHHHHHHHHHHHh-------cCCccEEEEEcCCccccchhhh
Confidence            34799999999999999998877764311       1124889999999766555433

The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=92.60  E-value=0.19  Score=55.59  Aligned_cols=94  Identities=16%  Similarity=0.188  Sum_probs=51.9

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEe--------------cCCCCChhhccccccCCCCC
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKII--------------NPKSITMGQLYGEFDSASHE 1416 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~i--------------np~~~t~~eL~G~~~~~t~e 1416 (1513)
                      ++.++|.|++|||||++++.+.+++..-+           ..+..+              ...+.|...+++.......+
T Consensus        18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-----------~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~   86 (196)
T PF13604_consen   18 DRVSVLQGPAGTGKTTLLKALAEALEAAG-----------KRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDE   86 (196)
T ss_dssp             CSEEEEEESTTSTHHHHHHHHHHHHHHTT-------------EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECC
T ss_pred             CeEEEEEECCCCCHHHHHHHHHHHHHhCC-----------CeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCccccc
Confidence            34678889999999999999988877521           111221              23344444444443321111


Q ss_pred             CccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCC--CCceeecC
Q psy4730        1417 WRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDD--NKKLCLIN 1468 (1513)
Q Consensus      1417 W~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDd--n~~L~L~n 1468 (1513)
                      +..-             .....++|.|  +-+|+.-++.|-.....  -|.+++.+
T Consensus        87 ~~~~-------------~~~~~vliVDEasmv~~~~~~~ll~~~~~~~~klilvGD  129 (196)
T PF13604_consen   87 GRPE-------------LPKKDVLIVDEASMVDSRQLARLLRLAKKSGAKLILVGD  129 (196)
T ss_dssp             SSCC--------------TSTSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEEE-
T ss_pred             cccc-------------CCcccEEEEecccccCHHHHHHHHHHHHhcCCEEEEECC
Confidence            0000             2334799999  77888777777776655  24555543

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=92.59  E-value=0.12  Score=54.72  Aligned_cols=31  Identities=19%  Similarity=0.263  Sum_probs=24.8

Q ss_pred             HHHHHHHhcceEEEeccCCCCchHHHHHHHHH
Q psy4730        1343 QVYEMILVRHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1343 qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      +|.+.+.. +-++|+|+||+||||+++.|...
T Consensus        28 ~l~~~l~~-k~~vl~G~SGvGKSSLiN~L~~~   58 (161)
T PF03193_consen   28 ELKELLKG-KTSVLLGQSGVGKSSLINALLPE   58 (161)
T ss_dssp             HHHHHHTT-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred             HHHHHhcC-CEEEEECCCCCCHHHHHHHHHhh
Confidence            34444444 89999999999999999999655

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=92.58  E-value=0.083  Score=52.92  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=19.3

Q ss_pred             EEEeccCCCCchHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      |+++|++||||||+++.|+.--
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            7899999999999999997543

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=92.57  E-value=0.078  Score=57.73  Aligned_cols=27  Identities=22%  Similarity=0.128  Sum_probs=22.7

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..+.-.-+.|||||||||++++|.+..
T Consensus        31 ~~~~VTAlIGPSGcGKST~LR~lNRmn   57 (253)
T COG1117          31 PKNKVTALIGPSGCGKSTLLRCLNRMN   57 (253)
T ss_pred             cCCceEEEECCCCcCHHHHHHHHHhhc
Confidence            456788899999999999999986554

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=92.54  E-value=0.79  Score=55.93  Aligned_cols=25  Identities=32%  Similarity=0.349  Sum_probs=21.8

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-++++||+||||||++.-||..+.
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~~~~  248 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAAKYF  248 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4588999999999999999997653

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=92.53  E-value=0.11  Score=63.05  Aligned_cols=25  Identities=24%  Similarity=0.335  Sum_probs=23.4

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ++|+|+||||||||++.+.|++.++
T Consensus        48 ~~ILLiGppG~GKT~lAraLA~~l~   72 (441)
T TIGR00390        48 KNILMIGPTGVGKTEIARRLAKLAN   72 (441)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC
Confidence            6899999999999999999998875

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=92.52  E-value=0.36  Score=60.32  Aligned_cols=109  Identities=19%  Similarity=0.177  Sum_probs=58.8

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC-hhhcc--cccc--CCCCCCccCHHH
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-MGQLY--GEFD--SASHEWRDGILA 1423 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t-~~eL~--G~~~--~~t~eW~DG~l~ 1423 (1513)
                      ....-|+|+||+|+||||+...|+..+..-...       .+|-+...++--+. ..+|.  |...  +......++-+.
T Consensus       348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~g-------kkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~  420 (559)
T PRK12727        348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAP-------RDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLL  420 (559)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCC-------CceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHH
Confidence            345688999999999999999998765432110       12333333432222 12221  1110  011123445566


Q ss_pred             HHHHHhhccCCCCceEEEEc--C--CCChHHHHhhh---cccCCCCceeecCC
Q psy4730        1424 KTFREMAVSTTPDRKWIMFD--G--PIDAVWIENMN---TVLDDNKKLCLING 1469 (1513)
Q Consensus      1424 ~~lR~~~~~~~~~~~WivfD--G--~~d~~wiE~LN---svLDdn~~L~L~nG 1469 (1513)
                      .++++..     ...+|+.|  |  +-|...++.|.   ........|.++.+
T Consensus       421 ~aL~~l~-----~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAt  468 (559)
T PRK12727        421 DLLERLR-----DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPAN  468 (559)
T ss_pred             HHHHHhc-----cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECC
Confidence            6666542     35899999  3  34666555443   33345566666543

>PRK02496 adk adenylate kinase; Provisional

Probab=92.51  E-value=0.08  Score=57.87  Aligned_cols=23  Identities=35%  Similarity=0.437  Sum_probs=21.4

Q ss_pred             EEEeccCCCCchHHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ++++|+|||||||+.+.|++.++
T Consensus         4 i~i~G~pGsGKst~a~~la~~~~   26 (184)
T PRK02496          4 LIFLGPPGAGKGTQAVVLAEHLH   26 (184)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            88999999999999999998875

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Probab=92.51  E-value=1.3  Score=54.76  Aligned_cols=172  Identities=18%  Similarity=0.231  Sum_probs=98.9

Q ss_pred             chhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeeccccccChhHHHHHHHHHhhhhccCCCC
Q psy4730         712 TNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYG  791 (1513)
Q Consensus       712 t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t~~~~~q~~i~~~~~~~~~~~~~  791 (1513)
                      ..........+...-..+-|||+.|++||||-++....=......+---..+|+.+-+     .+.+++-|.-.-+|-|=
T Consensus       147 S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip-----~~l~ESELFGhekGAFT  221 (464)
T COG2204         147 SPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIP-----ENLLESELFGHEKGAFT  221 (464)
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCC-----HHHHHHHhhcccccCcC
Confidence            3444455666777788999999999999999887776644332222112344444444     45666666655555553


Q ss_pred             CCCCceEEEEe--cccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCcCCCCCChhHHHHHHHHHHh
Q psy4730         792 PAMGKKYIVFI--AGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLA  869 (1513)
Q Consensus       792 ~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  869 (1513)
                      ....++.=.|-  .|                                       |                         
T Consensus       222 GA~~~r~G~fE~A~G---------------------------------------G-------------------------  237 (464)
T COG2204         222 GAITRRIGRFEQANG---------------------------------------G-------------------------  237 (464)
T ss_pred             CcccccCcceeEcCC---------------------------------------c-------------------------
Confidence            33222221111  00                                       0                         


Q ss_pred             hhcccchhHHHHHHHHHHHHHhhccC-CCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC-----
Q psy4730         870 KRNAQATDWYIEKIIQVYEMILDDLN-MPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT-----  943 (1513)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~~~~~dd~n-~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~-----  943 (1513)
                                        .+|+|++- ||-.-      -.-|||-+.+ |.|.-.+... ..-.|+++|||++-+     
T Consensus       238 ------------------TLfLDEI~~mpl~~------Q~kLLRvLqe-~~~~rvG~~~-~i~vdvRiIaaT~~dL~~~v  291 (464)
T COG2204         238 ------------------TLFLDEIGEMPLEL------QVKLLRVLQE-REFERVGGNK-PIKVDVRIIAATNRDLEEEV  291 (464)
T ss_pred             ------------------eEEeeccccCCHHH------HHHHHHHHHc-CeeEecCCCc-ccceeeEEEeecCcCHHHHH
Confidence                              13456665 44311      2356665554 3443333221 122499999999987     


Q ss_pred             -CCCCChhhhccceEeecCCCChH----HHHHHHHHHhhh
Q psy4730         944 -MNTITGRLLRHMNIISIDSFNEA----TLSKIFTSVLDW  978 (1513)
Q Consensus       944 -~~~~~~r~~~~f~~~~~~~~~~~----~l~~i~~~~l~~  978 (1513)
                       ....-.-|+-|.+++.+.=|.-.    +|--++..++..
T Consensus       292 ~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~  331 (464)
T COG2204         292 AAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKR  331 (464)
T ss_pred             HcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHH
Confidence             45677788888899777766643    666666665544

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=92.50  E-value=0.65  Score=52.63  Aligned_cols=125  Identities=18%  Similarity=0.176  Sum_probs=66.7

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCC---Ccc---CHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHE---WRD---GILAKTF 1426 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~e---W~D---G~l~~~l 1426 (1513)
                      -++++|++||||||++..|...+...=           -.++.+-|.  ..+++++++-|+--.   =.|   ..+.+..
T Consensus        15 r~viIG~sGSGKT~li~~lL~~~~~~f-----------~~I~l~t~~--~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k   81 (241)
T PF04665_consen   15 RMVIIGKSGSGKTTLIKSLLYYLRHKF-----------DHIFLITPE--YNNEYYKYIWPDHIFKVFDKEELEYILIRQK   81 (241)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhcccC-----------CEEEEEecC--CchhhhhhcchhhccccccHHHHHHHHHHHH
Confidence            688999999999999998876554310           234555552  234555544322100   011   1222222


Q ss_pred             H---Hhhc----cCCCCceEEEEcCCCChHHHHhhhcccCCCCcee-ecCCCeeecCCCCeEEEeecCCCCCCcchhhcc
Q psy4730        1427 R---EMAV----STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLC-LINGEIIKMSNTMNLIFECENLEFASPATVSRV 1498 (1513)
Q Consensus      1427 R---~~~~----~~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~-L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRc 1498 (1513)
                      .   +...    .....+.-||||--.+. ..       -++.... +.+|..    -++.++|=++.-.+.+|.+-+-+
T Consensus        82 ~~I~k~~~k~~~~k~~~~~LiIlDD~~~~-~~-------k~~~l~~~~~~gRH----~~is~i~l~Q~~~~lp~~iR~n~  149 (241)
T PF04665_consen   82 EKIEKYIKKSPQKKNNPRFLIILDDLGDK-KL-------KSKILRQFFNNGRH----YNISIIFLSQSYFHLPPNIRSNI  149 (241)
T ss_pred             HHHHHHhhhhcccCCCCCeEEEEeCCCCc-hh-------hhHHHHHHHhcccc----cceEEEEEeeecccCCHHHhhcc
Confidence            2   1111    11244678999954331 11       0110111 124544    45899999999999988775555


Q ss_pred             EEEE
Q psy4730        1499 GMIY 1502 (1513)
Q Consensus      1499 g~v~ 1502 (1513)
                      --+.
T Consensus       150 ~y~i  153 (241)
T PF04665_consen  150 DYFI  153 (241)
T ss_pred             eEEE
Confidence            5444

This is thought to be an ATPase involved in viral DNA packaging [].

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=92.49  E-value=0.48  Score=59.93  Aligned_cols=33  Identities=33%  Similarity=0.351  Sum_probs=28.7

Q ss_pred             CCCCCCCCCCccchHHHHHHhcCEEEEEEcCCC
Q psy4730         664 APEGPAGTGKTETSKDLAKAVAKQCIVFNCSDR  696 (1513)
Q Consensus       664 ~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~  696 (1513)
                      .+.||+|+|||++|+-||+.+|..+..|.+...
T Consensus        49 lLtGP~G~GKtttv~~La~elg~~v~Ew~np~~   81 (519)
T PF03215_consen   49 LLTGPSGCGKTTTVKVLAKELGFEVQEWINPVS   81 (519)
T ss_pred             EEECCCCCCHHHHHHHHHHHhCCeeEEecCCCC
Confidence            347999999999999999999999999876543

>PRK13949 shikimate kinase; Provisional

Probab=92.47  E-value=0.081  Score=57.04  Aligned_cols=24  Identities=38%  Similarity=0.380  Sum_probs=22.4

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .|+|+|++||||||+.+.|++.++
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~   26 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELG   26 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            589999999999999999998876

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=92.46  E-value=0.11  Score=54.04  Aligned_cols=38  Identities=16%  Similarity=0.105  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHH
Q psy4730        1337 YIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1337 ~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      +..-.-|+.++...+.+|+|.|++||||+++.+.|...
T Consensus         7 ~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~   44 (138)
T PF14532_consen    7 MRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY   44 (138)
T ss_dssp             HHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred             HHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence            33444567777788999999999999999998888754

>TIGR00602 rad24 checkpoint protein rad24

Probab=92.40  E-value=0.72  Score=59.60  Aligned_cols=32  Identities=13%  Similarity=0.338  Sum_probs=24.5

Q ss_pred             CChhhhc--cceEeecCCCChHHHHHHHHHHhhh
Q psy4730         947 ITGRLLR--HMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       947 ~~~r~~~--~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      +.+.+++  +-.++.+++.+...|.+....++..
T Consensus       256 L~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~  289 (637)
T TIGR00602       256 MNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTI  289 (637)
T ss_pred             cCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHh
Confidence            3367776  4566999999999988888887764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=92.39  E-value=0.26  Score=59.01  Aligned_cols=249  Identities=21%  Similarity=0.217  Sum_probs=0.0

Q ss_pred             cCCccceeccCCCccchHhHHHHHhccCcC---cccceeeccccccChhHHHHHHHHHhhhhccCCCCCCCCceEEEEec
Q psy4730         727 QNDVPMMFVGPTGTGKSTIVLNLLLNLSKD---KYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYGPAMGKKYIVFIA  803 (1513)
Q Consensus       727 ~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~---~~~~~~~~fs~~t~~~~~q~~i~~~~~~~~~~~~~~~~~~~~~~f~~  803 (1513)
                      ..+..+.|.|+=|||||++++.+...+..+   .+...+++--...........+...+...-...++....+...... 
T Consensus        18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-   96 (325)
T PF07693_consen   18 DDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLEKHFGSKKIKLYAKKK-   96 (325)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHHHhcCccchhHHHhhh-


Q ss_pred             ccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCc--------------------------------C
Q psy4730         804 GSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGI--------------------------------E  851 (1513)
Q Consensus       804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~  851 (1513)
                                                ..-.....-+.+..+...+..                                .
T Consensus        97 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (325)
T PF07693_consen   97 --------------------------LKSLKIKFKIKINLSKAIPLALIGLPALILAVAIAKLKAELKNAFKSLEEKFLK  150 (325)
T ss_pred             --------------------------hhhhhceeeeeeecceeehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhh


Q ss_pred             CCCCChhHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeee
Q psy4730         852 LPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDL  931 (1513)
Q Consensus       852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~  931 (1513)
                      -...+-+++...+...+..    .++++|        +++|||     |.+.+..+.|+|+.+-....+           
T Consensus       151 ~~~~~~~~~~~~~~~~l~~----~~~~iV--------iiIDdL-----DR~~~~~i~~~l~~ik~~~~~-----------  202 (325)
T PF07693_consen  151 KLKKEVEELISKIKKKLKE----SKKRIV--------IIIDDL-----DRCSPEEIVELLEAIKLLLDF-----------  202 (325)
T ss_pred             hhhHHHHHHHHHHHHhhhc----CCceEE--------EEEcch-----hcCCcHHHHHHHHHHHHhcCC-----------


Q ss_pred             cceEEEEeecCC--CCCCChh-------------hhccceE-eecCCCChHHHHHHHHHHhhhhhhc-cchhHHHHHHHH
Q psy4730         932 VDIIYITAMIPT--MNTITGR-------------LLRHMNI-ISIDSFNEATLSKIFTSVLDWHFSK-GFADSIVKLSKN  994 (1513)
Q Consensus       932 ~~~~~~~a~~~~--~~~~~~r-------------~~~~f~~-~~~~~~~~~~l~~i~~~~l~~~~~~-~f~~~~~~~~~~  994 (1513)
                      .++.|+.|+.+.  .+.+..+             +-+-|.+ +.+|+|+..++.+.+...+...... .-......+...
T Consensus       203 ~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (325)
T PF07693_consen  203 PNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLPPPSPSDLERYLNELLESLESETNESDDIETLSNS  282 (325)
T ss_pred             CCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEEEeCCCCHHHHHHHHHHHHHHhhhccccccchhhhhhc


Q ss_pred             HHHHHHHHHHhhhhccCCCCCCCccccchhhHHHHHhhh
Q psy4730         995 IVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIMGL 1033 (1513)
Q Consensus       995 ~~~~~~~~~~~~~~~~~~~~~~~hy~fnlrd~~~~~~g~ 1033 (1513)
                      ..+.....-..+...+...+   .+.-|+|++.|.+.-+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~---~~~~npR~ikr~iN~~  318 (325)
T PF07693_consen  283 ASNENLRIDEILNDIIDSID---FSIGNPRDIKRFINSL  318 (325)
T ss_pred             chhhhhhHHHHHHHHHHhhh---hcCCCHHHHHHHHHHH

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=92.38  E-value=0.08  Score=53.81  Aligned_cols=28  Identities=32%  Similarity=0.564  Sum_probs=24.0

Q ss_pred             CccceeccCCCccchHhHHHHHhccCcC
Q psy4730         729 DVPMMFVGPTGTGKSTIVLNLLLNLSKD  756 (1513)
Q Consensus       729 ~~~~ll~G~~g~GKt~~v~~~~~~~~~~  756 (1513)
                      +..++|+||+|||||+++..++..+...
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            4678999999999999999998876543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=92.37  E-value=0.096  Score=51.87  Aligned_cols=24  Identities=29%  Similarity=0.321  Sum_probs=21.8

Q ss_pred             EEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      |.|.||||+|||++.+.|++.+.+
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~~   24 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLLK   24 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHH
Confidence            679999999999999999988875

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>KOG0743|consensus

Probab=92.32  E-value=0.064  Score=64.55  Aligned_cols=26  Identities=23%  Similarity=0.434  Sum_probs=24.0

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ++|=+|.|||||||||++.++|..|+
T Consensus       235 KRGYLLYGPPGTGKSS~IaAmAn~L~  260 (457)
T KOG0743|consen  235 KRGYLLYGPPGTGKSSFIAAMANYLN  260 (457)
T ss_pred             hccceeeCCCCCCHHHHHHHHHhhcC
Confidence            57999999999999999999998875

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=92.31  E-value=0.12  Score=61.78  Aligned_cols=38  Identities=21%  Similarity=0.278  Sum_probs=33.3

Q ss_pred             HHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCc
Q psy4730         718 QNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSK  755 (1513)
Q Consensus       718 ~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~  755 (1513)
                      ...++..++..+++++++|+||||||+++..++..++.
T Consensus       149 ~~~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~ip~  186 (332)
T PRK13900        149 IKEFLEHAVISKKNIIISGGTSTGKTTFTNAALREIPA  186 (332)
T ss_pred             HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhCCC
Confidence            45688888999999999999999999999998876643

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=92.31  E-value=0.2  Score=60.18  Aligned_cols=105  Identities=17%  Similarity=0.198  Sum_probs=55.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCC-ChhhccccccCCCC----CCccCHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI-TMGQLYGEFDSASH----EWRDGILAKTF 1426 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~-t~~eL~G~~~~~t~----eW~DG~l~~~l 1426 (1513)
                      .-|+|+||+|+||||++..||..+..-+         ..+-+...+|--+ ..++|-.+-+...-    .-.+.-+..++
T Consensus       242 ~vI~LVGptGvGKTTTiaKLA~~L~~~G---------kkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL  312 (436)
T PRK11889        242 QTIALIGPTGVGKTTTLAKMAWQFHGKK---------KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRAL  312 (436)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHcC---------CcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHH
Confidence            5789999999999999999998765311         1233333333321 12222221110000    01223334444


Q ss_pred             HHhhccCCCCceEEEEcC----CCChHHHHhhhcccC----CCCceeec
Q psy4730        1427 REMAVSTTPDRKWIMFDG----PIDAVWIENMNTVLD----DNKKLCLI 1467 (1513)
Q Consensus      1427 R~~~~~~~~~~~WivfDG----~~d~~wiE~LNsvLD----dn~~L~L~ 1467 (1513)
                      +....  ......|+.|.    +-|..-++.|..+++    +...|+|+
T Consensus       313 ~~lk~--~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLs  359 (436)
T PRK11889        313 TYFKE--EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLS  359 (436)
T ss_pred             HHHHh--ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEEC
Confidence            44321  11347899993    235556677776664    34566665

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=92.29  E-value=0.11  Score=57.40  Aligned_cols=27  Identities=33%  Similarity=0.276  Sum_probs=23.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDI 1378 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l 1378 (1513)
                      +-+++|||||+||||.+--||..+..-
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~~   28 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKLK   28 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhhc
Confidence            368999999999999999998887643

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=92.29  E-value=0.11  Score=65.40  Aligned_cols=123  Identities=11%  Similarity=0.158  Sum_probs=66.3

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
                      ..+++|.||+|+|||.+.+.++..+..-..         ...+..++...+ ..++.+.+..       +..........
T Consensus       148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~---------~~~v~yi~~~~~-~~~~~~~~~~-------~~~~~~~~~~~  210 (450)
T PRK00149        148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNP---------NAKVVYVTSEKF-TNDFVNALRN-------NTMEEFKEKYR  210 (450)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCC---------CCeEEEEEHHHH-HHHHHHHHHc-------CcHHHHHHHHh
Confidence            358999999999999999999988754210         133444444433 3344443321       12222222111


Q ss_pred             ccCCCCceEEEEcCC--C--Ch----HHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccE---
Q psy4730        1431 VSTTPDRKWIMFDGP--I--DA----VWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVG--- 1499 (1513)
Q Consensus      1431 ~~~~~~~~WivfDG~--~--d~----~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg--- 1499 (1513)
                           ....+++|.-  +  ..    ...+-+|.+.+.++.+.+.+.-    +|        .+|....|+..||++   
T Consensus       211 -----~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~----~p--------~~l~~l~~~l~SRl~~gl  273 (450)
T PRK00149        211 -----SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDR----PP--------KELPGLEERLRSRFEWGL  273 (450)
T ss_pred             -----cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCC----CH--------HHHHHHHHHHHhHhcCCe
Confidence                 2368999932  1  22    3445556666655443332211    11        224445688999994   


Q ss_pred             EEEeeCCC
Q psy4730        1500 MIYFELKC 1507 (1513)
Q Consensus      1500 ~v~~~~~~ 1507 (1513)
                      ++.+.+-+
T Consensus       274 ~v~i~~pd  281 (450)
T PRK00149        274 TVDIEPPD  281 (450)
T ss_pred             eEEecCCC
Confidence            45665544

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=92.29  E-value=0.41  Score=56.12  Aligned_cols=93  Identities=19%  Similarity=0.163  Sum_probs=48.3

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCCC----CCCccCH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSAS----HEWRDGI 1421 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~t----~eW~DG~ 1421 (1513)
                      ..+.|.|+|++|+||||+.+.++.... ...      ....+-+.... +..+    ..++...+....    .....+.
T Consensus        18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~-~~~------~f~~v~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~   89 (287)
T PF00931_consen   18 EVRVVAIVGMGGIGKTTLARQVARDLR-IKN------RFDGVIWVSLS-KNPSLEQLLEQILRQLGEPDSSISDPKDIEE   89 (287)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHCHHH-HCC------CCTEEEEEEEE-S-SCCHHHHHHHHHHHTCC-STSSCCSSHHH
T ss_pred             CeEEEEEEcCCcCCcceeeeecccccc-ccc------ccccccccccc-ccccccccccccccccccccccccccccccc
Confidence            467899999999999999988875533 111      01112222222 2222    223333333222    2334444


Q ss_pred             HHHHHHHhhccCCCCceEEEEcCCCChHHHHh
Q psy4730        1422 LAKTFREMAVSTTPDRKWIMFDGPIDAVWIEN 1453 (1513)
Q Consensus      1422 l~~~lR~~~~~~~~~~~WivfDG~~d~~wiE~ 1453 (1513)
                      ....+++...   .++..+|||+--+...++.
T Consensus        90 ~~~~l~~~L~---~~~~LlVlDdv~~~~~~~~  118 (287)
T PF00931_consen   90 LQDQLRELLK---DKRCLLVLDDVWDEEDLEE  118 (287)
T ss_dssp             HHHHHHHHHC---CTSEEEEEEEE-SHHHH--
T ss_pred             ccccchhhhc---cccceeeeeeecccccccc
Confidence            5555555433   3378899999777664433

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PRK13695 putative NTPase; Provisional

Probab=92.25  E-value=0.45  Score=51.50  Aligned_cols=23  Identities=30%  Similarity=0.310  Sum_probs=20.3

Q ss_pred             EEEeccCCCCchHHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      |.|+|++||||||+.+.++..+.
T Consensus         3 i~ltG~~G~GKTTll~~i~~~l~   25 (174)
T PRK13695          3 IGITGPPGVGKTTLVLKIAELLK   25 (174)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999876654

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=92.23  E-value=0.1  Score=56.98  Aligned_cols=26  Identities=31%  Similarity=0.448  Sum_probs=23.5

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      +++++|+||+||||||+.+.|.+...
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~   27 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFP   27 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence            57899999999999999999988764

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PRK13947 shikimate kinase; Provisional

Probab=92.21  E-value=0.091  Score=56.57  Aligned_cols=24  Identities=29%  Similarity=0.391  Sum_probs=22.3

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .|+|+|++||||||+.+.||+.++
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg   26 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLS   26 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhC
Confidence            489999999999999999999886

>PRK08116 hypothetical protein; Validated

Probab=92.17  E-value=0.12  Score=60.21  Aligned_cols=27  Identities=30%  Similarity=0.377  Sum_probs=24.0

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      +.|++|.|++|+|||.+..+++..+..
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~~  140 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELIE  140 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHH
Confidence            458999999999999999999888754

>PRK07276 DNA polymerase III subunit delta'; Validated

Probab=92.13  E-value=0.66  Score=54.25  Aligned_cols=137  Identities=17%  Similarity=0.205  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhh-ccccc---------ccceeEEEecCCCCChhhcc
Q psy4730        1338 IEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-SATMK---------EFKTGYKIINPKSITMGQLY 1407 (1513)
Q Consensus      1338 ~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~-~~~~~---------~~~~~~~~inp~~~t~~eL~ 1407 (1513)
                      +....+..+.-+..|+.+++||  .||+++...+|+++.-.+... .+++.         +.+.+++.+.|..       
T Consensus        11 ~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~-------   81 (290)
T PRK07276         11 FQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQG-------   81 (290)
T ss_pred             HHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCC-------
Confidence            3333444444556789999996  689999999998886322111 11111         1234455555531       


Q ss_pred             ccccCCCCCCccCHHHHHHHHhh----ccC-CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEE
Q psy4730        1408 GEFDSASHEWRDGILAKTFREMA----VST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIF 1482 (1513)
Q Consensus      1408 G~~~~~t~eW~DG~l~~~lR~~~----~~~-~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iF 1482 (1513)
                       .          .+=..-+|+..    ..+ .+.++.+|+|+ +|..=.++-|++|   |.  |   |  ..|+++.+|+
T Consensus        82 -~----------~I~idqIR~l~~~~~~~p~~~~~kV~II~~-ad~m~~~AaNaLL---Kt--L---E--EPp~~t~~iL  139 (290)
T PRK07276         82 -Q----------VIKTDTIRELVKNFSQSGYEGKQQVFIIKD-ADKMHVNAANSLL---KV--I---E--EPQSEIYIFL  139 (290)
T ss_pred             -C----------cCCHHHHHHHHHHHhhCcccCCcEEEEeeh-hhhcCHHHHHHHH---HH--h---c--CCCCCeEEEE
Confidence             0          01133445432    222 34678889885 3333345566665   11  1   1  1366788999


Q ss_pred             eecCCCCCCcchhhccEEEEeeC
Q psy4730        1483 ECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1483 E~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
                      -+.+....-|.-+|||-.|+|.+
T Consensus       140 ~t~~~~~lLpTI~SRcq~i~f~~  162 (290)
T PRK07276        140 LTNDENKVLPTIKSRTQIFHFPK  162 (290)
T ss_pred             EECChhhCchHHHHcceeeeCCC
Confidence            99999999999999999999966

>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]

Probab=92.12  E-value=0.92  Score=55.48  Aligned_cols=80  Identities=18%  Similarity=0.179  Sum_probs=48.9

Q ss_pred             ccccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeeccccccChhHHHHHHHHHhhhh
Q psy4730         706 SDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRR  785 (1513)
Q Consensus       706 ~~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t~~~~~q~~i~~~~~~~  785 (1513)
                      .++|=...-.......++..-..+-+||++|+|||||-.+.+..=+..+..+--...+|+.+--     ...+++-|--.
T Consensus       223 ~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP-----esLlESELFGH  297 (550)
T COG3604         223 GGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP-----ESLLESELFGH  297 (550)
T ss_pred             ccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc-----hHHHHHHHhcc
Confidence            3444434444455556677789999999999999999887776544333222223456665543     33556666555


Q ss_pred             ccCCC
Q psy4730         786 RKGVY  790 (1513)
Q Consensus       786 ~~~~~  790 (1513)
                      .||-|
T Consensus       298 eKGAF  302 (550)
T COG3604         298 EKGAF  302 (550)
T ss_pred             ccccc
Confidence            55544

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=92.12  E-value=0.097  Score=54.55  Aligned_cols=23  Identities=30%  Similarity=0.385  Sum_probs=21.2

Q ss_pred             EEEeccCCCCchHHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      |.|.|++||||||+.+.|++.++
T Consensus         2 I~i~G~~GsGKst~a~~la~~~~   24 (147)
T cd02020           2 IAIDGPAGSGKSTVAKLLAKKLG   24 (147)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            68999999999999999998875

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=92.10  E-value=0.12  Score=52.26  Aligned_cols=35  Identities=23%  Similarity=0.262  Sum_probs=29.1

Q ss_pred             HHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1343 QVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1343 qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .|.+.+....-|+|.|+-|+||||++|.++++++.
T Consensus         7 ~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~   41 (123)
T PF02367_consen    7 KLAQILKPGDVILLSGDLGAGKTTFVRGLARALGI   41 (123)
T ss_dssp             HHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred             HHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            45566677889999999999999999999999864

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=92.05  E-value=0.14  Score=56.05  Aligned_cols=38  Identities=26%  Similarity=0.459  Sum_probs=32.3

Q ss_pred             hHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccC
Q psy4730         717 MQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       717 ~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~  754 (1513)
                      ....++...+..+..++++||+|+|||++++.++..++
T Consensus        13 ~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~   50 (186)
T cd01130          13 LQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            35567888899999999999999999999988776543

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK14738 gmk guanylate kinase; Provisional

Probab=92.00  E-value=0.06  Score=60.07  Aligned_cols=25  Identities=16%  Similarity=0.151  Sum_probs=21.5

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      ....++|+||+||||||+++.|.+.
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhc
Confidence            4568999999999999999999754

>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional

Probab=91.98  E-value=2  Score=54.13  Aligned_cols=37  Identities=19%  Similarity=0.140  Sum_probs=28.7

Q ss_pred             hHHHHHHHHhcCCccceeccCCCccchHhHHHHHhcc
Q psy4730         717 MQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       717 ~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      .....+..+...+.|+++.|++||||+++....-...
T Consensus       154 ~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s  190 (457)
T PRK11361        154 DICKDTAKIALSQASVLISGESGTGKELIARAIHYNS  190 (457)
T ss_pred             HHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhC
Confidence            3444555667788999999999999999998775543

>PF05729 NACHT: NACHT domain

Probab=91.92  E-value=0.13  Score=54.44  Aligned_cols=26  Identities=35%  Similarity=0.478  Sum_probs=22.9

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      +.++|+|++|+||||+++.++..+..
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~   26 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAE   26 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHh
Confidence            36899999999999999999887765

>KOG0480|consensus

Probab=91.91  E-value=0.55  Score=58.56  Aligned_cols=126  Identities=21%  Similarity=0.315  Sum_probs=80.4

Q ss_pred             CCccccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccccceEEecCceEEEEEecC--C-CCCCCCCchhHH----
Q psy4730        1122 PGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNP--G-YAGRTELPDNLK---- 1194 (1513)
Q Consensus      1122 ~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g~~i~~~p~~~iFiTmNp--~-y~gr~~LP~nLk---- 1194 (1513)
                      .+.-+|+|||+.++..-      | .+|..|+.+..-++.-.|-.-.++-...|.+.-||  | |--.+.|-+|++    
T Consensus       442 DnGICCIDEFDKMd~~d------q-vAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msAp  514 (764)
T KOG0480|consen  442 DNGICCIDEFDKMDVKD------Q-VAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAP  514 (764)
T ss_pred             cCceEEechhcccChHh------H-HHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCch
Confidence            45567999999998621      1 23445554444344444566678888899999999  3 765567777764    


Q ss_pred             --hhhhcccccCCChHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhhccCCCCCCcchhhHHHHHHHhhhhhhh
Q psy4730        1195 --VLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAGSLKIK 1267 (1513)
Q Consensus      1195 --~lFR~v~~~~PD~~~I~ei~L~~~GF~~a~~la~ki~~~~~l~~~~ls~q~~yd~glR~lk~vl~~a~~l~~~ 1267 (1513)
                        ++|--+-+...|..-           .....+|++|+.......+....+  .-|.++.++..+++|...+..
T Consensus       515 imSRFDL~FiLlD~~nE-----------~~D~~ia~hIld~h~~i~~~~~~~--~~~~~e~vrkYi~yAR~~~P~  576 (764)
T KOG0480|consen  515 IMSRFDLFFILLDDCNE-----------VVDYAIARHILDLHRGIDDATERV--CVYTLEQVRKYIRYARNFKPK  576 (764)
T ss_pred             hhhhhcEEEEEecCCch-----------HHHHHHHHHHHHHhcccccccccc--ccccHHHHHHHHHHHHhcCcc
Confidence              444444444333321           234567888888766655544332  467889999999998865543

>TIGR01448 recD_rel helicase, putative, RecD/TraA family

Probab=91.89  E-value=1.1  Score=59.27  Aligned_cols=115  Identities=13%  Similarity=0.139  Sum_probs=66.9

Q ss_pred             HHcCccccHHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEec---------
Q psy4730        1327 AKRNAQATDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIIN--------- 1397 (1513)
Q Consensus      1327 ~~~~l~~~~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~in--------- 1397 (1513)
                      ...+...++....-+..+    ..+.-++|.|+|||||||+++.+.+++....+.         ..+....         
T Consensus       318 ~~~~~~l~~~Q~~Ai~~~----~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~---------~~v~l~ApTg~AA~~L  384 (720)
T TIGR01448       318 KKLRKGLSEEQKQALDTA----IQHKVVILTGGPGTGKTTITRAIIELAEELGGL---------LPVGLAAPTGRAAKRL  384 (720)
T ss_pred             HhcCCCCCHHHHHHHHHH----HhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCC---------ceEEEEeCchHHHHHH
Confidence            344566666655544433    245689999999999999999999888764310         1112222         


Q ss_pred             -----CCCCChhhccccccCCCCCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCC-Cceee
Q psy4730        1398 -----PKSITMGQLYGEFDSASHEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDN-KKLCL 1466 (1513)
Q Consensus      1398 -----p~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn-~~L~L 1466 (1513)
                           -.+.|...++|.. +..      ....     ..........+|.|  +-+|......|-+.+.++ +.+.+
T Consensus       385 ~e~~g~~a~Tih~lL~~~-~~~------~~~~-----~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~~~~~~rlilv  449 (720)
T TIGR01448       385 GEVTGLTASTIHRLLGYG-PDT------FRHN-----HLEDPIDCDLLIVDESSMMDTWLALSLLAALPDHARLLLV  449 (720)
T ss_pred             HHhcCCccccHHHHhhcc-CCc------cchh-----hhhccccCCEEEEeccccCCHHHHHHHHHhCCCCCEEEEE
Confidence                 2345555666532 111      0000     01112345789999  788988888877766544 44443

This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.

>PHA02774 E1; Provisional

Probab=91.88  E-value=0.39  Score=60.25  Aligned_cols=89  Identities=20%  Similarity=0.381  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCC
Q psy4730        1337 YIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHE 1416 (1513)
Q Consensus      1337 ~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~e 1416 (1513)
                      |+.....+..-.-.+.+++++||||+|||.+.-.|++.++   +          ..+..+|-              ..+-
T Consensus       420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~---G----------~vi~fvN~--------------~s~F  472 (613)
T PHA02774        420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK---G----------KVISFVNS--------------KSHF  472 (613)
T ss_pred             HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC---C----------CEEEEEEC--------------cccc
Confidence            3333333333333456999999999999999999988874   1          11222342              2334


Q ss_pred             CccCHHHHHHHHhhccCCCCceEEEEcCCCCh--HHHH-hhhcccCCCCceee
Q psy4730        1417 WRDGILAKTFREMAVSTTPDRKWIMFDGPIDA--VWIE-NMNTVLDDNKKLCL 1466 (1513)
Q Consensus      1417 W~DG~l~~~lR~~~~~~~~~~~WivfDG~~d~--~wiE-~LNsvLDdn~~L~L 1466 (1513)
                      |        +...     .+.+.+|+|-...+  .|++ .|-.+||.| .++|
T Consensus       473 w--------Lqpl-----~d~ki~vlDD~t~~~w~y~d~~Lrn~LdG~-~v~l  511 (613)
T PHA02774        473 W--------LQPL-----ADAKIALLDDATHPCWDYIDTYLRNALDGN-PVSI  511 (613)
T ss_pred             c--------cchh-----ccCCEEEEecCcchHHHHHHHHHHHHcCCC-ccee
Confidence            5        1111     23388999976555  5666 899999988 4444

>PRK10436 hypothetical protein; Provisional

Probab=91.87  E-value=0.51  Score=58.89  Aligned_cols=31  Identities=23%  Similarity=0.395  Sum_probs=22.8

Q ss_pred             HHHHhcce-EEEeccCCCCchHHHHHHHHHHH
Q psy4730        1346 EMILVRHG-LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1346 ~~~~~~~g-vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      +++...+| |++.|||||||||.+..+.+.++
T Consensus       212 ~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~~  243 (462)
T PRK10436        212 QALQQPQGLILVTGPTGSGKTVTLYSALQTLN  243 (462)
T ss_pred             HHHHhcCCeEEEECCCCCChHHHHHHHHHhhC
Confidence            34444554 77999999999999877665554

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=91.84  E-value=0.11  Score=52.08  Aligned_cols=20  Identities=25%  Similarity=0.438  Sum_probs=18.6

Q ss_pred             EEEeccCCCCchHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      |+|+|+||+||||+++.|..
T Consensus         2 V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            78999999999999999974

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=91.84  E-value=0.1  Score=60.75  Aligned_cols=32  Identities=22%  Similarity=0.363  Sum_probs=0.0

Q ss_pred             HHHHHHhcceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      |..++..+..|++.|+|||||||+++.|...+
T Consensus       120 l~~~v~~~~~ili~G~tGSGKTT~l~all~~i  151 (270)
T PF00437_consen  120 LRSAVRGRGNILISGPTGSGKTTLLNALLEEI  151 (270)
T ss_dssp             HHHCHHTTEEEEEEESTTSSHHHHHHHHHHHC
T ss_pred             HhhccccceEEEEECCCccccchHHHHHhhhc

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=91.84  E-value=0.096  Score=55.09  Aligned_cols=23  Identities=39%  Similarity=0.512  Sum_probs=20.7

Q ss_pred             EEEeccCCCCchHHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ++|.|+|||||||+.+.|++.++
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~~   24 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERLG   24 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhcC
Confidence            68999999999999999988754

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=91.84  E-value=0.2  Score=56.82  Aligned_cols=22  Identities=27%  Similarity=0.323  Sum_probs=19.4

Q ss_pred             EEEeccCCCCchHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      +++.|+|||||||.++-+....
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~~   22 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKDR   22 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHhc
Confidence            5789999999999999987664

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=91.83  E-value=0.72  Score=56.93  Aligned_cols=43  Identities=9%  Similarity=0.222  Sum_probs=32.6

Q ss_pred             eEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhh
Q psy4730         934 IIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLD  977 (1513)
Q Consensus       934 ~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~  977 (1513)
                      +.+|.++.. ...+.+.+.+|..++.+.+++.+++......++.
T Consensus       158 t~~Il~t~~-~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~  200 (397)
T PRK14955        158 AIFIFATTE-LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICE  200 (397)
T ss_pred             eEEEEEeCC-hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence            344444432 3577888999999999999999999888777654

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=91.82  E-value=0.14  Score=55.57  Aligned_cols=27  Identities=37%  Similarity=0.564  Sum_probs=19.6

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .+.++|+|++|+|||++++.+...+..
T Consensus        24 ~~~~ll~G~~G~GKT~ll~~~~~~~~~   50 (185)
T PF13191_consen   24 PRNLLLTGESGSGKTSLLRALLDRLAE   50 (185)
T ss_dssp             ---EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            468999999999999999988777665

>PRK00625 shikimate kinase; Provisional

Probab=91.80  E-value=0.11  Score=56.22  Aligned_cols=24  Identities=29%  Similarity=0.322  Sum_probs=22.1

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|+|+|.|||||||+.+.|++.++
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~   25 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLS   25 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            489999999999999999998875

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=91.74  E-value=0.36  Score=51.29  Aligned_cols=53  Identities=15%  Similarity=0.231  Sum_probs=37.3

Q ss_pred             HHHHHhcCEEEEEEcCCCCCCCCCCCCccccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhc
Q psy4730         679 DLAKAVAKQCIVFNCSDRPTFPPNLRPSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLN  752 (1513)
Q Consensus       679 ~La~~lG~~~~v~ncs~~~~f~~~~~~~~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~  752 (1513)
                      +.-+.+|.+++..+..+...                    ..-+..+++. +.++|+|++|+|||++++.++..
T Consensus         6 ~~y~~~gy~v~~~S~~~~~g--------------------~~~l~~~l~~-k~~vl~G~SGvGKSSLiN~L~~~   58 (161)
T PF03193_consen    6 EQYEKLGYPVFFISAKTGEG--------------------IEELKELLKG-KTSVLLGQSGVGKSSLINALLPE   58 (161)
T ss_dssp             HHHHHTTSEEEE-BTTTTTT--------------------HHHHHHHHTT-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred             HHHHHcCCcEEEEeCCCCcC--------------------HHHHHHHhcC-CEEEEECCCCCCHHHHHHHHHhh
Confidence            44457888877777654433                    1223444555 99999999999999999988764

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK06547 hypothetical protein; Provisional

Probab=91.71  E-value=0.11  Score=56.14  Aligned_cols=26  Identities=31%  Similarity=0.242  Sum_probs=21.9

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..-|+|.|++||||||+.+.|++.++
T Consensus        15 ~~~i~i~G~~GsGKTt~a~~l~~~~~   40 (172)
T PRK06547         15 MITVLIDGRSGSGKTTLAGALAARTG   40 (172)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34677779999999999999998754

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=91.69  E-value=0.083  Score=61.24  Aligned_cols=25  Identities=28%  Similarity=0.384  Sum_probs=21.0

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      =|+|+|-|||||||..+-|++.+..
T Consensus         3 Liil~G~P~SGKTt~a~~L~~~~~~   27 (270)
T PF08433_consen    3 LIILCGLPCSGKTTRAKELKKYLEE   27 (270)
T ss_dssp             EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHh
Confidence            4899999999999999999998876

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=91.63  E-value=0.11  Score=54.20  Aligned_cols=26  Identities=23%  Similarity=0.252  Sum_probs=22.0

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ...-+.|.||+||||||+.++++...
T Consensus        28 ~Ge~iaitGPSG~GKStllk~va~Li   53 (223)
T COG4619          28 AGEFIAITGPSGCGKSTLLKIVASLI   53 (223)
T ss_pred             CCceEEEeCCCCccHHHHHHHHHhcc
Confidence            34578999999999999999998554

>PRK15115 response regulator GlrR; Provisional

Probab=91.61  E-value=2.6  Score=52.84  Aligned_cols=114  Identities=15%  Similarity=0.175  Sum_probs=63.7

Q ss_pred             HHHHHHHhcCCccccCCceeeeecceEEEEeecCC------CCCCChhhhccceEeecCCCChH----HHHHHHHHHhhh
Q psy4730         909 ELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------MNTITGRLLRHMNIISIDSFNEA----TLSKIFTSVLDW  978 (1513)
Q Consensus       909 e~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------~~~~~~r~~~~f~~~~~~~~~~~----~l~~i~~~~l~~  978 (1513)
                      +-|-.+++.|.+.-.+.. ...-.|+.+|++++.+      +..+.+.++.+++.+.+.=|+-.    ++..+...++..
T Consensus       246 ~~L~~~l~~~~~~~~g~~-~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~  324 (444)
T PRK15115        246 VKLLRVLQERKVRPLGSN-RDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQ  324 (444)
T ss_pred             HHHHHHHhhCCEEeCCCC-ceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHH
Confidence            444555665655332222 2233489999998875      45788888999887666666543    555555555543


Q ss_pred             hhhc------cchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccccchhhHHHHHhhhcccCCcccCChh
Q psy4730         979 HFSK------GFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIMGLTQLPASHCKAPD 1045 (1513)
Q Consensus       979 ~~~~------~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hy~fnlrd~~~~~~g~~~~~~~~~~~~~ 1045 (1513)
                      +-.+      ++.++..           +..           ...+|-=|+|.|.++++-..........+..
T Consensus       325 ~~~~~~~~~~~~~~~a~-----------~~L-----------~~~~WpgNvreL~~~i~~~~~~~~~~~i~~~  375 (444)
T PRK15115        325 AAERHKPFVRAFSTDAM-----------KRL-----------MTASWPGNVRQLVNVIEQCVALTSSPVISDA  375 (444)
T ss_pred             HHHHhCCCCCCcCHHHH-----------HHH-----------HhCCCCChHHHHHHHHHHHHHhCCCCccChh
Confidence            2110      1222111           111           2345556999999999876554333333333

>PRK00300 gmk guanylate kinase; Provisional

Probab=91.61  E-value=0.097  Score=58.21  Aligned_cols=27  Identities=22%  Similarity=0.181  Sum_probs=23.1

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ...-|.|+|||||||||+.+.|+..+.
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            345789999999999999999988653

>TIGR03689 pup_AAA proteasome ATPase

Probab=91.61  E-value=0.11  Score=65.29  Aligned_cols=28  Identities=29%  Similarity=0.398  Sum_probs=24.7

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      ...|++|+||||||||++.+.++..+..
T Consensus       215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~  242 (512)
T TIGR03689       215 PPKGVLLYGPPGCGKTLIAKAVANSLAQ  242 (512)
T ss_pred             CCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence            4569999999999999999999988753

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>KOG0735|consensus

Probab=91.60  E-value=0.63  Score=58.64  Aligned_cols=28  Identities=25%  Similarity=0.464  Sum_probs=24.0

Q ss_pred             hcCCccceeccCCCccchHhHHHHHhcc
Q psy4730         726 LQNDVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       726 ~~~~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      +.....+||.||||||||.++.....+.
T Consensus       698 lr~~~giLLyGppGcGKT~la~a~a~~~  725 (952)
T KOG0735|consen  698 LRLRTGILLYGPPGCGKTLLASAIASNS  725 (952)
T ss_pred             cccccceEEECCCCCcHHHHHHHHHhhC
Confidence            5667889999999999999999887653

>PRK14528 adenylate kinase; Provisional

Probab=91.59  E-value=0.12  Score=56.72  Aligned_cols=24  Identities=25%  Similarity=0.437  Sum_probs=21.7

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|++.|||||||||+.+.|++.++
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~~~~   26 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCERLS   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            389999999999999999998774

>TIGR03263 guanyl_kin guanylate kinase

Probab=91.54  E-value=0.11  Score=56.29  Aligned_cols=24  Identities=25%  Similarity=0.214  Sum_probs=21.1

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..++|+||+||||||+.+.|++..
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccC
Confidence            468999999999999999998754

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=91.54  E-value=0.11  Score=54.73  Aligned_cols=84  Identities=20%  Similarity=0.255  Sum_probs=48.0

Q ss_pred             EeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCC--------C--hhhccccccCCCCCC-ccCHHHH
Q psy4730        1356 VVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI--------T--MGQLYGEFDSASHEW-RDGILAK 1424 (1513)
Q Consensus      1356 lvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~--------t--~~eL~G~~~~~t~eW-~DG~l~~ 1424 (1513)
                      |+|||||||||+.+.|++.++-                .+|++..+        |  -.++-..++  .++. -|.++..
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~----------------~~is~~~llr~~~~~~s~~g~~i~~~l~--~g~~vp~~~v~~   62 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGL----------------VHISVGDLLREEIKSDSELGKQIQEYLD--NGELVPDELVIE   62 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTS----------------EEEEHHHHHHHHHHTTSHHHHHHHHHHH--TTSS--HHHHHH
T ss_pred             CcCCCCCChHHHHHHHHHhcCc----------------ceechHHHHHHHHhhhhHHHHHHHHHHH--hhccchHHHHHH
Confidence            6899999999999999988753                11211110        1  111111222  2232 3556677


Q ss_pred             HHHHhhccCCCCceEEEEcC-CCChHHHHhhhccc
Q psy4730        1425 TFREMAVSTTPDRKWIMFDG-PIDAVWIENMNTVL 1458 (1513)
Q Consensus      1425 ~lR~~~~~~~~~~~WivfDG-~~d~~wiE~LNsvL 1458 (1513)
                      ++++........ +-+|+|| |-...-++.|..++
T Consensus        63 ll~~~l~~~~~~-~g~ildGfPrt~~Qa~~l~~~~   96 (151)
T PF00406_consen   63 LLKERLEQPPCN-RGFILDGFPRTLEQAEALEEIL   96 (151)
T ss_dssp             HHHHHHHSGGTT-TEEEEESB-SSHHHHHHHHHHH
T ss_pred             HHHHHHhhhccc-ceeeeeeccccHHHHHHHHHHH
Confidence            776654444334 4456888 77777788777655

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=91.53  E-value=0.1  Score=53.20  Aligned_cols=58  Identities=21%  Similarity=0.303  Sum_probs=33.3

Q ss_pred             cCCccceeccCCCccchHhHHHHHhccCcC-----cccceeeccccccChhHHHHHHHHHhhh
Q psy4730         727 QNDVPMMFVGPTGTGKSTIVLNLLLNLSKD-----KYLPNIINFSARTSSNITQEMIMAKLDR  784 (1513)
Q Consensus       727 ~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~-----~~~~~~~~fs~~t~~~~~q~~i~~~~~~  784 (1513)
                      +.+..+++.||+|+|||+++.++++.+...     .....+++.....+...+...+...+..
T Consensus         2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~   64 (131)
T PF13401_consen    2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGL   64 (131)
T ss_dssp             -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-
T ss_pred             CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCc
Confidence            345678999999999999999999876421     2222345555555555555555555433

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=91.53  E-value=0.13  Score=55.79  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=22.3

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|+|.|+|||||||+.+.|++.+.
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~~~~   27 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSVLA   27 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhC
Confidence            4689999999999999999988764

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=91.51  E-value=0.45  Score=56.64  Aligned_cols=27  Identities=33%  Similarity=0.319  Sum_probs=23.8

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      ..-++++||+|+||||++..||..+..
T Consensus       114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~  140 (318)
T PRK10416        114 PFVILVVGVNGVGKTTTIGKLAHKYKA  140 (318)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            357899999999999999999988764

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=91.50  E-value=0.34  Score=54.37  Aligned_cols=22  Identities=23%  Similarity=0.321  Sum_probs=19.3

Q ss_pred             cceEEEeccCCCCchHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      .+-++++|+||+||||+.+.|+
T Consensus        12 ~~~~liyG~~G~GKtt~a~~~~   33 (220)
T TIGR01618        12 PNMYLIYGKPGTGKTSTIKYLP   33 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHhcC
Confidence            4579999999999999988874

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=91.48  E-value=0.22  Score=51.22  Aligned_cols=42  Identities=24%  Similarity=0.217  Sum_probs=35.4

Q ss_pred             hhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCc
Q psy4730         714 VTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSK  755 (1513)
Q Consensus       714 ~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~  755 (1513)
                      +|......+...+..+..++|.|+.|+|||++++.+...+..
T Consensus         7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~   48 (133)
T TIGR00150         7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI   48 (133)
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            455666667777888999999999999999999999988754

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=91.47  E-value=0.13  Score=55.61  Aligned_cols=123  Identities=18%  Similarity=0.210  Sum_probs=55.6

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEe---cCCCCChhhccccccCCCCCCccCHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKII---NPKSITMGQLYGEFDSASHEWRDGILAKTF 1426 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~i---np~~~t~~eL~G~~~~~t~eW~DG~l~~~l 1426 (1513)
                      .++.|+|+||+|||||+++..|..-  .... ..+++  .+...+.+   ..+.+.+=++=|.-     .-+..++..+.
T Consensus         2 k~~~vlL~Gps~SGKTaLf~~L~~~--~~~~-T~tS~--e~n~~~~~~~~~~~~~~lvD~PGH~-----rlr~~~~~~~~   71 (181)
T PF09439_consen    2 KRPTVLLVGPSGSGKTALFSQLVNG--KTVP-TVTSM--ENNIAYNVNNSKGKKLRLVDIPGHP-----RLRSKLLDELK   71 (181)
T ss_dssp             ---EEEEE-STTSSHHHHHHHHHHS--S----B---S--SEEEECCGSSTCGTCECEEEETT-H-----CCCHHHHHHHH
T ss_pred             CCceEEEEcCCCCCHHHHHHHHhcC--CcCC-eeccc--cCCceEEeecCCCCEEEEEECCCcH-----HHHHHHHHhhh
Confidence            3678999999999999999998643  1000 00111  01111111   12222222222321     12333333211


Q ss_pred             HHhhccCCCCceEEEEcCCCCh----HHHHhhhcccCCCCceeecCCCeeecCCCCeEEE--eecCCCCCCcchhh
Q psy4730        1427 REMAVSTTPDRKWIMFDGPIDA----VWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIF--ECENLEFASPATVS 1496 (1513)
Q Consensus      1427 R~~~~~~~~~~~WivfDG~~d~----~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iF--E~~~l~~asPatvs 1496 (1513)
                          .....+.--+|.|+-.++    +..|.|-.+|-+....          +..+.+++  -=+|+..|-|+..-
T Consensus        72 ----~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~----------~~~~piLIacNK~Dl~~A~~~~~I  133 (181)
T PF09439_consen   72 ----YLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQ----------KNKPPILIACNKQDLFTAKPPKKI  133 (181)
T ss_dssp             ----HHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCC----------TT--EEEEEEE-TTSTT---HHHH
T ss_pred             ----chhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhc----------cCCCCEEEEEeCccccccCCHHHH
Confidence                111233467888986543    4788888888543211          23344444  44888888777653

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>TIGR01818 ntrC nitrogen regulation protein NR(I)

Probab=91.46  E-value=4.6  Score=50.99  Aligned_cols=114  Identities=11%  Similarity=0.172  Sum_probs=61.1

Q ss_pred             HHHHHHHhcCCccccCCceeeeecceEEEEeecCC------CCCCChhhhccceE--eecCCCC--hHHHHHHHHHHhhh
Q psy4730         909 ELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------MNTITGRLLRHMNI--ISIDSFN--EATLSKIFTSVLDW  978 (1513)
Q Consensus       909 e~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------~~~~~~r~~~~f~~--~~~~~~~--~~~l~~i~~~~l~~  978 (1513)
                      .-|.++++.|.+...+.. ...-.|+.+|++++.+      ...+.+.|+.|++.  +.+++..  .+++..+...++..
T Consensus       246 ~~ll~~l~~~~~~~~~~~-~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~  324 (463)
T TIGR01818       246 TRLLRVLADGEFYRVGGR-TPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLAL  324 (463)
T ss_pred             HHHHHHHhcCcEEECCCC-ceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHH
Confidence            334444555554432322 1223488999999876      34566778887775  5555555  45777777776654


Q ss_pred             hhhccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccccchhhHHHHHhhhcccCCc
Q psy4730         979 HFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIMGLTQLPAS 1039 (1513)
Q Consensus       979 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hy~fnlrd~~~~~~g~~~~~~~ 1039 (1513)
                      +- ..+...+..    +...+++..           ...||-=|+|.|.+++.-.......
T Consensus       325 ~~-~~~~~~~~~----~~~~a~~~L-----------~~~~wpgNvreL~~~~~~~~~~~~~  369 (463)
T TIGR01818       325 AA-RELDVEPKL----LDPEALERL-----------KQLRWPGNVRQLENLCRWLTVMASG  369 (463)
T ss_pred             HH-HHhCCCCCC----cCHHHHHHH-----------HhCCCCChHHHHHHHHHHHHHhCCC
Confidence            31 111100000    111111111           2346667999999999876654333

This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=91.43  E-value=0.12  Score=57.80  Aligned_cols=26  Identities=27%  Similarity=0.328  Sum_probs=21.2

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ...-+.++|||||||||+.++..+.+
T Consensus        26 ~gef~vliGpSGsGKTTtLkMINrLi   51 (309)
T COG1125          26 EGEFLVLIGPSGSGKTTTLKMINRLI   51 (309)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhccc
Confidence            45578899999999999999875443

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=91.41  E-value=0.13  Score=56.86  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=20.5

Q ss_pred             EEEeccCCCCchHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      |.|.||+||||||+.+.|+..+
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6799999999999999999887

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=91.41  E-value=0.11  Score=63.37  Aligned_cols=26  Identities=23%  Similarity=0.328  Sum_probs=23.0

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..||+|+||||||||++.+.++..++
T Consensus       156 p~gvLL~GppGtGKT~lakaia~~l~  181 (364)
T TIGR01242       156 PKGVLLYGPPGTGKTLLAKAVAHETN  181 (364)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhCC
Confidence            46899999999999999999987654

Many proteins may score above the trusted cutoff because an internal

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=91.38  E-value=0.22  Score=56.38  Aligned_cols=27  Identities=19%  Similarity=0.247  Sum_probs=23.8

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ...+++|.||+|||||++.+.++....
T Consensus        41 ~~~~~~l~G~~G~GKT~La~ai~~~~~   67 (227)
T PRK08903         41 ADRFFYLWGEAGSGRSHLLQALVADAS   67 (227)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            456999999999999999999988754

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=91.38  E-value=0.68  Score=57.11  Aligned_cols=42  Identities=29%  Similarity=0.338  Sum_probs=31.3

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT 1402 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t 1402 (1513)
                      ..++|.||||+|||++++.+++.+....         ..+.+..+|+...+
T Consensus        56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~---------~~~~~v~in~~~~~   97 (394)
T PRK00411         56 LNVLIYGPPGTGKTTTVKKVFEELEEIA---------VKVVYVYINCQIDR   97 (394)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHhc---------CCcEEEEEECCcCC
Confidence            4699999999999999999988775422         12556677776554

>PRK05541 adenylylsulfate kinase; Provisional

Probab=91.38  E-value=0.12  Score=56.11  Aligned_cols=29  Identities=24%  Similarity=0.143  Sum_probs=24.6

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      +...-|+++|++||||||+.+.|++.+..
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~   33 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLKL   33 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            34457899999999999999999988763

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit

Probab=91.33  E-value=1.9  Score=55.59  Aligned_cols=105  Identities=19%  Similarity=0.203  Sum_probs=59.8

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhh------c-ccccc----------c--------ceeEEEecCCCCChhh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKK------S-ATMKE----------F--------KTGYKIINPKSITMGQ 1405 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~------~-~~~~~----------~--------~~~~~~inp~~~t~~e 1405 (1513)
                      ++-.+|.|+||+||||++..+..++.......      . ++++.          .        ......+.-.+.|...
T Consensus       160 ~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~~~~~~~~~~~a~TiHr  239 (586)
T TIGR01447       160 SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAAEALIAALPSEAVTIHR  239 (586)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccchhhhhccccccchhhh
Confidence            67889999999999999998877775432210      0 00000          0        0000112335777788


Q ss_pred             ccccccCCCCCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCC-Cceee
Q psy4730        1406 LYGEFDSASHEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDN-KKLCL 1466 (1513)
Q Consensus      1406 L~G~~~~~t~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn-~~L~L 1466 (1513)
                      |+|.. +.+..         ++.. .........+|.|  +-+|..-+..|-+.+.++ |.+.+
T Consensus       240 lLg~~-~~~~~---------~~~~-~~~~l~~dvlIiDEaSMvd~~l~~~ll~al~~~~rlIlv  292 (586)
T TIGR01447       240 LLGIK-PDTKR---------FRHH-ERNPLPLDVLVVDEASMVDLPLMAKLLKALPPNTKLILL  292 (586)
T ss_pred             hhccc-CCcch---------hhhc-ccCCCcccEEEEcccccCCHHHHHHHHHhcCCCCEEEEE
Confidence            88853 22211         1211 1112345799999  778888777777766555 54444

This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=91.32  E-value=0.13  Score=53.54  Aligned_cols=24  Identities=33%  Similarity=0.357  Sum_probs=21.6

Q ss_pred             EEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      |-+-|||||||||+-+.||+.++-
T Consensus         3 ItIsG~pGsG~TTva~~lAe~~gl   26 (179)
T COG1102           3 ITISGLPGSGKTTVARELAEHLGL   26 (179)
T ss_pred             EEeccCCCCChhHHHHHHHHHhCC
Confidence            678899999999999999998763

>PRK05480 uridine/cytidine kinase; Provisional

Probab=91.31  E-value=0.14  Score=57.31  Aligned_cols=25  Identities=32%  Similarity=0.282  Sum_probs=22.6

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-|.|.|++||||||+.+.|++.+
T Consensus         6 ~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          6 PIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578899999999999999999887

>PLN02165 adenylate isopentenyltransferase

Probab=91.18  E-value=0.17  Score=59.87  Aligned_cols=24  Identities=21%  Similarity=0.319  Sum_probs=22.3

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .|.|+||||||||++...||+.++
T Consensus        45 iivIiGPTGSGKStLA~~LA~~l~   68 (334)
T PLN02165         45 VVVIMGATGSGKSRLSVDLATRFP   68 (334)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHcC
Confidence            699999999999999999998875

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=91.15  E-value=0.55  Score=58.98  Aligned_cols=29  Identities=21%  Similarity=0.346  Sum_probs=26.1

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDI 1378 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l 1378 (1513)
                      .+.-+.|+||||+||||+.+.|++++...
T Consensus       102 ~~~IL~LvGPpG~GKSsLa~~la~~le~~  130 (644)
T PRK15455        102 KKQILYLLGPVGGGKSSLAERLKSLMERV  130 (644)
T ss_pred             CCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence            45689999999999999999999999874

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=91.12  E-value=0.16  Score=53.57  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=21.4

Q ss_pred             EEEeccCCCCchHHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      |+++|+|||||||+.+.|++.+.
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l~   24 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLF   24 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999998875

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=91.10  E-value=0.14  Score=54.58  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=24.0

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      ..|+|+|+.|+||||+=+.||++++.
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~   28 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNL   28 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCC
Confidence            46899999999999999999999874

>PLN02200 adenylate kinase family protein

Probab=91.08  E-value=0.14  Score=58.33  Aligned_cols=25  Identities=20%  Similarity=0.303  Sum_probs=22.3

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|+|+|+|||||||+.+.|++.++
T Consensus        44 ~ii~I~G~PGSGKsT~a~~La~~~g   68 (234)
T PLN02200         44 FITFVLGGPGSGKGTQCEKIVETFG   68 (234)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3588999999999999999998775

>PRK04040 adenylate kinase; Provisional

Probab=91.07  E-value=0.15  Score=55.89  Aligned_cols=24  Identities=29%  Similarity=0.284  Sum_probs=21.8

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|+|+|.|||||||+.+.|++.+.
T Consensus         4 ~i~v~G~pG~GKtt~~~~l~~~l~   27 (188)
T PRK04040          4 VVVVTGVPGVGKTTVLNKALEKLK   27 (188)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHhc
Confidence            588999999999999999998874

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator

Probab=91.04  E-value=0.61  Score=58.56  Aligned_cols=113  Identities=14%  Similarity=0.155  Sum_probs=73.5

Q ss_pred             HHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCCCCCCc---
Q psy4730        1346 EMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSASHEWR--- 1418 (1513)
Q Consensus      1346 ~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~t~eW~--- 1418 (1513)
                      .......+|+|.|++|+||+++.+.+.....+           ....+..+|+.+++    -.+|||.-.   +.|.   
T Consensus       157 ~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-----------~~~~~v~v~c~~~~~~~~~~~lfg~~~---~~~~~~~  222 (445)
T TIGR02915       157 KIAPSDITVLLLGESGTGKEVLARALHQLSDR-----------KDKRFVAINCAAIPENLLESELFGYEK---GAFTGAV  222 (445)
T ss_pred             HHhCCCCCEEEECCCCcCHHHHHHHHHHhCCc-----------CCCCeEEEECCCCChHHHHHHhcCCCC---CCcCCCc
Confidence            34456789999999999999988888654322           01346788888876    557788532   1222   


Q ss_pred             ---cCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEee
Q psy4730        1419 ---DGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC 1484 (1513)
Q Consensus      1419 ---DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~ 1484 (1513)
                         .|.+..          ...-=+++|  +.+++..-..|-.+|++...-.+...  -..+.++|+|+-+
T Consensus       223 ~~~~g~~~~----------a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~--~~~~~~~rii~~~  281 (445)
T TIGR02915       223 KQTLGKIEY----------AHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGR--EEIPVDVRIVCAT  281 (445)
T ss_pred             cCCCCceeE----------CCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCC--ceeeeceEEEEec
Confidence               222211          112347778  67788888999999987654443332  2456788999976

Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).

>TIGR00235 udk uridine kinase

Probab=90.98  E-value=0.15  Score=56.92  Aligned_cols=25  Identities=28%  Similarity=0.219  Sum_probs=21.7

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|.|+||+||||||+.+.|+..+.
T Consensus         7 ~vi~I~G~sGsGKSTl~~~l~~~l~   31 (207)
T TIGR00235         7 IIIGIGGGSGSGKTTVARKIYEQLG   31 (207)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3577999999999999999987765

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=90.98  E-value=0.13  Score=55.62  Aligned_cols=26  Identities=31%  Similarity=0.460  Sum_probs=23.0

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ...|+|+|++||||||+.+.|++.++
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~   29 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLN   29 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence            34699999999999999999998764

>PRK14737 gmk guanylate kinase; Provisional

Probab=90.96  E-value=0.14  Score=56.03  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=21.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..|+|+|||||||||+.+.|.+..
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            468999999999999999997654

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=90.91  E-value=0.25  Score=56.12  Aligned_cols=28  Identities=25%  Similarity=0.190  Sum_probs=24.4

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDI 1378 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l 1378 (1513)
                      ..-|.|.||+||||||+.+.|+..+...
T Consensus        33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~   60 (229)
T PRK09270         33 RTIVGIAGPPGAGKSTLAEFLEALLQQD   60 (229)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            4578899999999999999999888753

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=90.91  E-value=0.13  Score=53.14  Aligned_cols=26  Identities=31%  Similarity=0.359  Sum_probs=22.0

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..-+.|+|++||||||++++|+....
T Consensus        11 g~~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen   11 GEIVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             CCEEEEEccCCCccccceeeeccccc
Confidence            45789999999999999999976544

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=90.89  E-value=0.16  Score=56.07  Aligned_cols=24  Identities=38%  Similarity=0.407  Sum_probs=22.3

Q ss_pred             EEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      |-|.|||||||||+.+.|+..++.
T Consensus         2 IgI~G~sgSGKTTla~~L~~~L~~   25 (194)
T PF00485_consen    2 IGIAGPSGSGKTTLAKRLAQILNK   25 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCc
Confidence            678999999999999999999985

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1513
3vkh_A	3367	X-Ray Structure Of A Functional Full-Length Dynein		9e-93
3vkg_A	3245	X-Ray Structure Of An Mtbd Truncation Mutant Of Dyn		1e-92
4ai6_A	2695	Dynein Motor Domain - Adp Complex Length = 2695		6e-59
3qmz_A	2486	Crystal Structure Of The Cytoplasmic Dynein Heavy C		7e-59

>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor Domain Length = 3367

Iteration: 1
 Score =  339 bits (869), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 176/444 (39%), Positives = 271/444 (61%), Gaps = 38/444 (8%)
Query: 1084 IGTKMDEFLKNKITDKTISADDLRSLFFGNFLGNTIIFPGAWACFDEFNRIELEVLSVVA 1143
            +G+++  F+     D+      +  +F G      +   GAW CFDEFNR+E  +LS V+
Sbjct: 624  LGSQLGRFVLVFCCDEGFDLQAMSRIFVG------LCQCGAWGCFDEFNRLEERILSAVS 677
Query: 1144 QQVQSIQLATIAKLKKF-MFEGTEISLNPTSMIFITMNPGYAGRTELPDNLKVLFRSVAM 1202
            QQ+Q+IQ+A     K+  +  G  ISL+    IF+TMNPGYAGR+ LPDNLK LFRS+AM
Sbjct: 678  QQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAM 737
Query: 1203 MVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAG 1262
            + PD  MI ++ LYS GF+ A++LA KIV  +KLC EQLS+QSHYD+G+RA+KSVL +AG
Sbjct: 738  IKPDREMIAQVMLYSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAG 797
Query: 1263 SLKIKY------PEKD--------------EFVIVLRAIIDVNMPKFLVQDLPLFIGIYK 1302
             +K K       P  D              E  ++L +I D  +PK +  D+PL   +  
Sbjct: 798  GIKRKCQPPQLPPITDAESKTKADQIYCQYEIGVLLNSINDTMIPKLVADDIPLIQSLLL 857
Query: 1303 DLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILVRHGLMVVGESFG 1362
            D+FPG +L P   D+L ++I+    +R+      ++EKI+Q+++++ + HG+M+VG S G
Sbjct: 858  DVFPGSQLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGG 917
Query: 1363 GKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGIL 1422
            GKTT+++   +++  +   KS           +++PK+IT  QL+G  D  + EW DG+ 
Sbjct: 918  GKTTSWEVYLEAIEQVDNIKSEA--------HVMDPKAITKDQLFGSLDLTTREWTDGLF 969
Query: 1423 AKTFREM---AVSTTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMN 1479
              T R +       +  R WI+FDG +D  W+EN+N++LDDNK L L NGE + + N + 
Sbjct: 970  TATLRRIIDNVRGESTKRHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVR 1029
Query: 1480 LIFECENLEFASPATVSRVGMIYF 1503
            ++FE ++L++A+ AT+SR GM++F
Sbjct: 1030 VMFEVQDLKYATLATISRCGMVWF 1053

>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor Domain Length = 3245

Iteration: 1
 Score =  338 bits (868), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 176/444 (39%), Positives = 271/444 (61%), Gaps = 38/444 (8%)
Query: 1084 IGTKMDEFLKNKITDKTISADDLRSLFFGNFLGNTIIFPGAWACFDEFNRIELEVLSVVA 1143
            +G+++  F+     D+      +  +F G      +   GAW CFDEFNR+E  +LS V+
Sbjct: 624  LGSQLGRFVLVFCCDEGFDLQAMSRIFVG------LCQCGAWGCFDEFNRLEERILSAVS 677
Query: 1144 QQVQSIQLATIAKLKKF-MFEGTEISLNPTSMIFITMNPGYAGRTELPDNLKVLFRSVAM 1202
            QQ+Q+IQ+A     K+  +  G  ISL+    IF+TMNPGYAGR+ LPDNLK LFRS+AM
Sbjct: 678  QQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAM 737
Query: 1203 MVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAG 1262
            + PD  MI ++ LYS GF+ A++LA KIV  +KLC EQLS+QSHYD+G+RA+KSVL +AG
Sbjct: 738  IKPDREMIAQVMLYSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAG 797
Query: 1263 SLKIKY------PEKD--------------EFVIVLRAIIDVNMPKFLVQDLPLFIGIYK 1302
             +K K       P  D              E  ++L +I D  +PK +  D+PL   +  
Sbjct: 798  GIKRKCQPPQLPPITDAESKTKADQIYCQYEIGVLLNSINDTMIPKLVADDIPLIQSLLL 857
Query: 1303 DLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILVRHGLMVVGESFG 1362
            D+FPG +L P   D+L ++I+    +R+      ++EKI+Q+++++ + HG+M+VG S G
Sbjct: 858  DVFPGSQLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGG 917
Query: 1363 GKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGIL 1422
            GKTT+++   +++  +   KS           +++PK+IT  QL+G  D  + EW DG+ 
Sbjct: 918  GKTTSWEVYLEAIEQVDNIKSEA--------HVMDPKAITKDQLFGSLDLTTREWTDGLF 969
Query: 1423 AKTFREM---AVSTTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMN 1479
              T R +       +  R WI+FDG +D  W+EN+N++LDDNK L L NGE + + N + 
Sbjct: 970  TATLRRIIDNVRGESTKRHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVR 1029
Query: 1480 LIFECENLEFASPATVSRVGMIYF 1503
            ++FE ++L++A+ AT+SR GM++F
Sbjct: 1030 VMFEVQDLKYATLATISRCGMVWF 1053

>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex Length = 2695

Iteration: 1
 Score =  226 bits (577), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 128/391 (32%), Positives = 208/391 (53%), Gaps = 15/391 (3%)
Query: 1123 GAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPG 1182
            GAW CFDEFNR++ +VLS V+  +Q IQ               E  L+P + +FIT+NPG
Sbjct: 698  GAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPG 757
Query: 1183 YAGRTELPDNLKVLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLS 1242
            Y GR+ELP+NLK  FR  +M  P    I E+ L  MGF+++K LA KIV+  +L S + S
Sbjct: 758  YNGRSELPENLKKSFREFSMKSPQSGTIAEMILQIMGFEDSKSLASKIVHFLELLSSKCS 817
Query: 1243 SQSHYDYGMRAVKSVLNAAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYK 1302
            S +HY +G+R +K VL     L  ++ E ++ V+   ++  V +P     D  +F     
Sbjct: 818  SMNHYHFGLRTLKGVLRNCSPLISEFGEGEKTVV--ESLKRVILPSLGDTDELVFKDELS 875
Query: 1303 DLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILVRHGLMVVGESFG 1362
             +F     P   +  +++ +K    +     ++ +++K +Q Y M   +  L++VG++  
Sbjct: 876  KIFDSAGTPLNSK-AIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAGC 934
Query: 1363 GKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGIL 1422
            GKT  ++T+ D++       +           +I+ K +T   LYG    A+ EWRDG+ 
Sbjct: 935  GKTATWKTVIDAMAIFDGHANVVY--------VIDTKVLTKESLYGSMLKATLEWRDGLF 986
Query: 1423 AKTFREMAVSTTP----DRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTM 1478
                R +    T      R W++FD  +D  ++E MN+VLDDNK L L NGE + +    
Sbjct: 987  TSILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNF 1046
Query: 1479 NLIFECENLEFASPATVSRVGMIYFELKCIS 1509
             ++FE +NL+  +PAT++R G+++F     S
Sbjct: 1047 RILFETDNLDHTTPATITRCGLLWFSTDVCS 1077

>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain Motor Domain Length = 2486

Iteration: 1
 Score =  226 bits (576), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 128/391 (32%), Positives = 208/391 (53%), Gaps = 15/391 (3%)
Query: 1123 GAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPG 1182
            GAW CFDEFNR++ +VLS V+  +Q IQ               E  L+P + +FIT+NPG
Sbjct: 479  GAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPG 538
Query: 1183 YAGRTELPDNLKVLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLS 1242
            Y GR+ELP+NLK  FR  +M  P    I E+ L  MGF+++K LA KIV+  +L S + S
Sbjct: 539  YNGRSELPENLKKSFREFSMKSPQSGTIAEMILQIMGFEDSKSLASKIVHFLELLSSKCS 598
Query: 1243 SQSHYDYGMRAVKSVLNAAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYK 1302
            S +HY +G+R +K VL     L  ++ E ++ V+   ++  V +P     D  +F     
Sbjct: 599  SMNHYHFGLRTLKGVLRNCSPLISEFGEGEKTVV--ESLKRVILPSLGDTDELVFKDELS 656
Query: 1303 DLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILVRHGLMVVGESFG 1362
             +F     P   +  +++ +K    +     ++ +++K +Q Y M   +  L++VG++  
Sbjct: 657  KIFDSAGTPLNSK-AIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAGC 715
Query: 1363 GKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGIL 1422
            GKT  ++T+ D++       +           +I+ K +T   LYG    A+ EWRDG+ 
Sbjct: 716  GKTATWKTVIDAMAIFDGHANVVY--------VIDTKVLTKESLYGSMLKATLEWRDGLF 767
Query: 1423 AKTFREMAVSTTP----DRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTM 1478
                R +    T      R W++FD  +D  ++E MN+VLDDNK L L NGE + +    
Sbjct: 768  TSILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNF 827
Query: 1479 NLIFECENLEFASPATVSRVGMIYFELKCIS 1509
             ++FE +NL+  +PAT++R G+++F     S
Sbjct: 828  RILFETDNLDHTTPATITRCGLLWFSTDVCS 858

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1513
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	0.0
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	1e-170
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	5e-55
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	2e-24
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	3e-23
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	0.0
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	0.0
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	2e-56
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	2e-25
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	8e-23
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	8e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score =  752 bits (1944), Expect = 0.0
 Identities = 184/645 (28%), Positives = 317/645 (49%), Gaps = 31/645 (4%)

Query: 75  TTARQINEEQELLKMVRTNYETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNA 134
           T     +      K           + E ++    +W  +    +  D   E  +  +  
Sbjct: 2   TRHHHHHHGGGDYKDDDDKGGGKVPVEEEIQDLKAVWVELSNTWQEIDSLKETAWSAIIP 61

Query: 135 DEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSKLESFRKEVPILQCISNPGMEERH 194
            +++   +   ++L  L  ++ +           ++ ++ + K   I+  + +  +++RH
Sbjct: 62  RKVRKSLEDTLQKLKNLPNRIRQYSAFDHA----QNLIKIYLKGNAIITDLHSEAIKDRH 117

Query: 195 WKILSDELGQDITPNDQTSLKNMLDLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEWS 254
           WKIL   L  +    +  +L ++ D  +        EV  +A  E  L + L  +   W+
Sbjct: 118 WKILKKRLNTNWIITE-LTLGSIWDSDLARNENIYREVITAAQGEIALEEFLKGVREFWT 176

Query: 255 DIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINM 314
            ++LD+V Y+     +++G D++   L +H+     M+ SPY K FE E   W+ +L  +
Sbjct: 177 TLELDLVNYQRKC-KLVRGWDDLFNKLAEHLNSISAMKMSPYYKVFEEEANHWDDRLNKV 235

Query: 315 QDILDIWLQVQGTWMYLEPIFS-SEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQ 373
           + +LD+W+ VQ  W+YLE IFS S DI + +P ES  FK+++  +  I+  V+  P IL+
Sbjct: 236 RSLLDVWIDVQRRWVYLEGIFSGSGDINQLLPAESTRFKSINSEFIAILKKVSGAPLILE 295

Query: 374 ATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRV 433
              +E + +   + + +L  +QK L +YLE++R  F RF+F+ +++LLEI+  +KD +++
Sbjct: 296 VLAIERIQQTMERLSDLLGKVQKALGEYLERQRSAFARFYFVGDEDLLEIIGNSKDIIKI 355

Query: 434 QPHLKKIFEGINLLEYSD-SLEIIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLM 492
           Q H +K+F G+  L   D    IIGM S EGE V     I   +    + +WL  VE  M
Sbjct: 356 QKHFRKMFAGLANLTLDDEKTTIIGMSSAEGETVTFKKPISIANG-PKIHEWLTMVESEM 414

Query: 493 IKSLQDICMMALGAYYKSE------RVVWVTKWPGMVVICVSSITWTAEVEKAIQGRK-- 544
             +L  +   +L  + + +         WV  +P  +V+  S I W+ +V++A+ G    
Sbjct: 415 KSTLATLLSESLQHFNQVDVNDHSKYSEWVDNYPTQLVLLTSQIVWSTQVDQALGGGTLQ 474

Query: 545 -------LDAMLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVASLVESK- 596
                  L ++   +   ++ +   V   L   +R     LI   VH ++VV  L + K 
Sbjct: 475 QSKIQEQLQSIEQTTQMILNNLADSVLQDLSAQKRKKFEHLITELVHQRDVVRQLQKCKN 534

Query: 597 VTQVEDFAWMSQLRYY------NVNNLVNVCMITTTVQYGYEYLGNSDRLVITPLTDRCY 650
           +T  +DF W+  +RYY      NV + + + M   T  YG+EYLG  +RLV TPLTDRCY
Sbjct: 535 LTGNKDFDWLYHMRYYYDATQENVLHKLVIHMANATFYYGFEYLGIGERLVQTPLTDRCY 594

Query: 651 RTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSD 695
            TL  AL+  +GG P GPAGTGKTET K L   + +  +VF C +
Sbjct: 595 LTLTQALESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDE 639

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score =  567 bits (1463), Expect = e-170
 Identities = 168/415 (40%), Positives = 259/415 (62%), Gaps = 32/415 (7%)

Query: 1123 GAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKF-MFEGTEISLNPTSMIFITMNP 1181
            GAW CFDEFNR+E  +LS V+QQ+Q+IQ+A     K+  +  G  ISL+    IF+TMNP
Sbjct: 657  GAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNP 716

Query: 1182 GYAGRTELPDNLKVLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQL 1241
            GYAGR+ LPDNLK LFRS+AM+ PD  MI ++ LYS GF+ A++LA KIV  +KLC EQL
Sbjct: 717  GYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYSQGFKTAEVLAGKIVPLFKLCQEQL 776

Query: 1242 SSQSHYDYGMRAVKSVLNAAGSLKIKYPEKD--------------------EFVIVLRAI 1281
            S+QSHYD+G+RA+KSVL +AG +K K                         E  ++L +I
Sbjct: 777  SAQSHYDFGLRALKSVLVSAGGIKRKCQPPQLPPITDAESKTKADQIYCQYEIGVLLNSI 836

Query: 1282 IDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKI 1341
             D  +PK +  D+PL   +  D+FPG +L P   D+L ++I+    +R+      ++EKI
Sbjct: 837  NDTMIPKLVADDIPLIQSLLLDVFPGSQLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKI 896

Query: 1342 IQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI 1401
            +Q+++++ + HG+M+VG S GGKTT+++   +++          +   K+   +++PK+I
Sbjct: 897  LQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQ--------VDNIKSEAHVMDPKAI 948

Query: 1402 TMGQLYGEFDSASHEWRDGILAKTFREMAVST---TPDRKWIMFDGPIDAVWIENMNTVL 1458
            T  QL+G  D  + EW DG+   T R +  +    +  R WI+FDG +D  W+EN+N++L
Sbjct: 949  TKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTKRHWIIFDGDVDPEWVENLNSLL 1008

Query: 1459 DDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKCISWTTF 1513
            DDNK L L NGE + + N + ++FE ++L++A+ AT+SR GM++F  + ++    
Sbjct: 1009 DDNKLLTLPNGERLALPNNVRVMFEVQDLKYATLATISRCGMVWFSEEILTTQMI 1063

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score =  211 bits (539), Expect = 5e-55
 Identities = 52/230 (22%), Positives = 102/230 (44%), Gaps = 21/230 (9%)

Query: 891  LDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTM----NT 946
             D++N+P  + YG Q  +  +RQ+++    +     T + L  I ++ A  P        
Sbjct: 1380 CDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQ 1439

Query: 947  ITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSES 1006
            +T R LRH  I+ +D  + ++L++I+ +            ++   + N+  A    YSES
Sbjct: 1440 LTHRFLRHAPILLVDFPSTSSLTQIYGTFNRALM--KLLPNLRSFADNLTDAMVEFYSES 1497

Query: 1007 TKVFLPIPSKSHYVFNLRDFAKVIMGLTQ-LPASHCKAPDKMYKLWTHEILRVFSDRLVD 1065
             K F P   ++HY+++ R+ ++    L + +        + + +LW HE LR+F DRLV+
Sbjct: 1498 QKRFTP-DIQAHYIYSPRELSRWDRALLEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVE 1556

Query: 1066 EADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKTISADDLRSLFFGNFL 1115
              +K+     +         +   + LK             R + + N+L
Sbjct: 1557 TEEKEWTDKKIDEVALKHFPSVNLDALK-------------RPILYSNWL 1593

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score =  110 bits (277), Expect = 2e-24
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 10/122 (8%)

Query: 700  PPNLRPSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYL 759
               +   D++IPT  T      ++ +L    P++  GP G+GK+  + + L       + 
Sbjct: 1275 THKVASPDVVIPTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTMTLTSTLRAF--PDFE 1332

Query: 760  PNIINFSARTSSNITQEMIMAKLDRRR----KGVYGPA-MGKKYIVFIAGSLKIKYPEKD 814
               +NFS+ T+  +  +      + +R    + V  P  +GK  +VF     +I  P  D
Sbjct: 1333 VVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCD---EINLPSTD 1389

Query: 815  EF 816
            ++
Sbjct: 1390 KY 1391

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score =  106 bits (267), Expect = 3e-23
 Identities = 23/81 (28%), Positives = 47/81 (58%)

Query: 811 PEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAK 870
             + E  ++L +I D  +PK +  D+PL   +  D+FPG +L P   D+L ++I+    +
Sbjct: 824 YCQYEIGVLLNSINDTMIPKLVADDIPLIQSLLLDVFPGSQLQPIQMDQLRKKIQEIAKQ 883

Query: 871 RNAQATDWYIEKIIQVYEMIL 891
           R+      ++EKI+Q+++++ 
Sbjct: 884 RHLVTKQEWVEKILQLHQILN 904

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695

 Score =  668 bits (1725), Expect = 0.0
 Identities = 144/664 (21%), Positives = 274/664 (41%), Gaps = 26/664 (3%)

Query: 54  EEFKKAHKEVLTLLDLLQKDRTTARQINEEQELLKMVRTNYETVDEMLERLEPF----DQ 109
           E  ++ ++E L   D   K R    ++  E   L         + + +  +       + 
Sbjct: 21  EYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRYIADKHNM 80

Query: 110 LWSIILEFRESSDL------WMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKM 163
           L     E  E S L         G  +   + + +        +L ++ +        K 
Sbjct: 81  LGGCPKERAEISMLEGAVLDIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCHKT 140

Query: 164 VNDLTRSKLESFRKEVPI-LQCISNPGMEERHWKILSDELGQDITP--NDQTSLKNMLDL 220
             +        F     + +    +P   +   K++  +   +  P  +        +  
Sbjct: 141 YLNGDHVTHPDFMLYDALDVVLYMDPMCLDAFPKLVCFKKRIEAIPQIDKYLKSSKYIAW 200

Query: 221 GIRNILPKLEEVSLS-ASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQV 279
            ++              S E  + +SLN++   W + + +V+ +  +G  +++  D ++ 
Sbjct: 201 PLQGWQATFGGGDHPPKSDEFVIEKSLNRIKKFWKEAQYEVIEHS-SGLKLVREWDVLEQ 259

Query: 280 MLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIF-SSE 338
              + +    +M+ S Y K FE +    ESKL  + +I   W++VQ  W+ L  I   + 
Sbjct: 260 ACKEDLEELVSMKASNYYKIFEQDCLDLESKLTKLSEIQVNWVEVQFYWLDLYGILGENL 319

Query: 339 DIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGL 398
           DI   +P E+  FK++   +K I     +    ++   + +           L++I+  L
Sbjct: 320 DIQNFLPLETSKFKSLTSEYKMITTRAFQLDTTIEVIHIPNFDTTLKLTIDSLKMIKSSL 379

Query: 399 NDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGM 458
           + +LE++R  FPRF+FL ND+LL+I+   K   +V   +KK+F  I  + + +   I G+
Sbjct: 380 STFLERQRRQFPRFYFLGNDDLLKIIGSGKHHDQVSKFMKKMFGSIESIIFLED-FITGV 438

Query: 459 ISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERV-VWVT 517
            S+EGE + L+  I         ++WL  ++  +  S+       LG       + V V+
Sbjct: 439 RSVEGEVLNLNEKIEL-KDSIQAQEWLNILDTEIKLSVFTQFRDCLGQIKDGTDIEVVVS 497

Query: 518 KWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKLLMSERITICA 577
           K+    ++  + + WT  VEK +Q  +      +   +I  ++ K+  K   + +  I A
Sbjct: 498 KYIFQAILLSAQVMWTELVEKCLQTNQFSKYWKEVDMKIKGLLDKLN-KSSDNVKKKIEA 556

Query: 578 LIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYY------NVNNLVNVCMITTTVQYGY 631
           L+V  +H   V+  L      +     W    ++Y      +  N V +      +QY +
Sbjct: 557 LLVEYLHFNNVIGQLKNCSTKEEARLLWAKVQKFYQKNDTLDDLNSVFISQSGYLLQYKF 616

Query: 632 EYLGNSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVF 691
           EY+G  +RL+ TPL    + TL  +L    GG   GPAGTGKTET K   + + +  +VF
Sbjct: 617 EYIGIPERLIYTPLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVF 676

Query: 692 NCSD 695
           NC D
Sbjct: 677 NCDD 680

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695

 Score =  646 bits (1668), Expect = 0.0
 Identities = 128/392 (32%), Positives = 207/392 (52%), Gaps = 15/392 (3%)

Query: 1123 GAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPG 1182
            GAW CFDEFNR++ +VLS V+  +Q IQ               E  L+P + +FIT+NPG
Sbjct: 698  GAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPG 757

Query: 1183 YAGRTELPDNLKVLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLS 1242
            Y GR+ELP+NLK  FR  +M  P    I E+ L  MGF+++K LA KIV+  +L S + S
Sbjct: 758  YNGRSELPENLKKSFREFSMKSPQSGTIAEMILQIMGFEDSKSLASKIVHFLELLSSKCS 817

Query: 1243 SQSHYDYGMRAVKSVLNAAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYK 1302
            S +HY +G+R +K VL     L  ++ E ++   V+ ++  V +P     D  +F     
Sbjct: 818  SMNHYHFGLRTLKGVLRNCSPLISEFGEGEK--TVVESLKRVILPSLGDTDELVFKDELS 875

Query: 1303 DLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILVRHGLMVVGESFG 1362
             +F     P  +   +++ +K    +     ++ +++K +Q Y M   +  L++VG++  
Sbjct: 876  KIFDSAGTPL-NSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAGC 934

Query: 1363 GKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGIL 1422
            GKT  ++T+ D++                   +I+ K +T   LYG    A+ EWRDG+ 
Sbjct: 935  GKTATWKTVIDAMAI--------FDGHANVVYVIDTKVLTKESLYGSMLKATLEWRDGLF 986

Query: 1423 AKTFREMAVSTT----PDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTM 1478
                R +    T      R W++FD  +D  ++E MN+VLDDNK L L NGE + +    
Sbjct: 987  TSILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNF 1046

Query: 1479 NLIFECENLEFASPATVSRVGMIYFELKCISW 1510
             ++FE +NL+  +PAT++R G+++F     S 
Sbjct: 1047 RILFETDNLDHTTPATITRCGLLWFSTDVCSI 1078

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695

 Score =  216 bits (551), Expect = 2e-56
 Identities = 48/230 (20%), Positives = 96/230 (41%), Gaps = 20/230 (8%)

Query: 891  LDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT----MNT 946
             D++N+P+ + YG+Q  V  LRQ+++ +  +       V +  I  + A  P        
Sbjct: 1342 CDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIP 1401

Query: 947  ITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSES 1006
            ++ R  RH  I+ +   +  +LS+I+       F           ++    A+ H+Y   
Sbjct: 1402 MSERFTRHAAILYLGYPSGKSLSQIYEIYYKAIF--KLVPEFRSYTEPFARASVHLY-NE 1458

Query: 1007 TKVFLPIPSKSHYVFNLRDFAKVIMGLTQ-LPASHCKAPDKMYKLWTHEILRVFSDRLVD 1065
             K       +SHY+F+ R+  +++ G+   +     +    + +LW +E  R+F+DRLV 
Sbjct: 1459 CKARYSTGLQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVG 1518

Query: 1066 EADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKTISADDLRSLFFGNFL 1115
              +K S   ++             E +   + ++ +      SL F   L
Sbjct: 1519 VKEKNSFEQLLY------------ETVDKYLPNQDLGNISSTSLLFSGLL 1556

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695

 Score =  114 bits (287), Expect = 2e-25
 Identities = 14/89 (15%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 803 AGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIE 862
              L  ++ E ++   V+ ++  V +P     D  +F      +F     P  +   +++
Sbjct: 836 CSPLISEFGEGEK--TVVESLKRVILPSLGDTDELVFKDELSKIFDSAGTPL-NSKAIVQ 892

Query: 863 QIKINLAKRNAQATDWYIEKIIQVYEMIL 891
            +K    +     ++ +++K +Q Y M  
Sbjct: 893 CLKDAGQRSGFSMSEEFLKKCMQFYYMQK 921

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695

 Score =  105 bits (264), Expect = 8e-23
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 6/107 (5%)

Query: 700  PPNLRPSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYL 759
               +   D++IPT  T          L +   ++  GP G+GK+ I+ N L N     Y 
Sbjct: 1238 AHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNS--SLYD 1295

Query: 760  PNIINFSARTSSNITQEMIMAKLD--RRRKGVYG--PAMGKKYIVFI 802
               INFS  T++      +    +     KG+     +  K  ++F 
Sbjct: 1296 VVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFC 1342

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695

 Score = 56.4 bits (136), Expect = 8e-08
 Identities = 37/286 (12%), Positives = 92/286 (32%), Gaps = 55/286 (19%)

Query: 1163 EGTEISLNPTSMIFITMNPGYAGRTELPDNLKVLFRSVAMMVPDYAMIGEI--SLYSMGF 1220
            E   +++    ++     P   GR  + +        + +  P    + +I    Y   F
Sbjct: 1376 ENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKAIF 1435

Query: 1221 Q-------NAKILAEKIVYTYKLCSEQLS--SQSHYDYGMRAVKSVLNAAGSLK------ 1265
            +         +  A   V+ Y  C  + S   QSHY +  R +  ++    +        
Sbjct: 1436 KLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTAINTGPRQ 1495

Query: 1266 ---------------------IKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDL 1304
                                 +   EK+ F  +L   +D  +P   + ++     ++   
Sbjct: 1496 TLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYLPNQDLGNISSTSLLFSG- 1554

Query: 1305 FPGIELPPTDRDELIEQIKINLAKRNAQATD----------WYIEKIIQVYEMILVRHGL 1354
               ++    ++ +L+  I+        +  +           +I +I +  + +  +  +
Sbjct: 1555 LLSLDFKEVNKTDLVNFIEERFKTFCDEELEVPMVIHESMVDHILRIDRALKQV--QGHM 1612

Query: 1355 MVVGESFGGKTTAYQTLAD----SLTDIAAKKSATMKEFKTGYKII 1396
            M++G S  GKT   + +A      +      + + + +F    K  
Sbjct: 1613 MLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHSNLSDFDMILKKA 1658

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 76.4 bits (187), Expect = 6e-14
 Identities = 110/748 (14%), Positives = 225/748 (30%), Gaps = 247/748 (33%)

Query: 265 DTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQV 324
           +TG +  Q  D + V  D             ++  F+             +D+ D     
Sbjct: 10  ETGEHQYQYKDILSVFEDA------------FVDNFD------------CKDVQD----- 40

Query: 325 QGTWMYLEPIFSSE---DIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDML 381
                  + I S E    I+      S   +     W      ++K   ++Q   +E++L
Sbjct: 41  -----MPKSILSKEEIDHIIMSKDAVSGTLRL---FW----TLLSKQEEMVQKF-VEEVL 87

Query: 382 -KNFNKCNLMLELIQKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPL-RVQPH--L 437
             N+     ++  I+          R++  +   L ND   ++ +  K  + R+QP+  L
Sbjct: 88  RINYK---FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN--QVFA--KYNVSRLQPYLKL 140

Query: 438 KKIFEGINLLEYSDSLEII--GMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLMIKS 495
           ++      LLE   +  ++  G++   G     SG            K       + +  
Sbjct: 141 RQ-----ALLELRPAKNVLIDGVL---G-----SG------------KTW-----VALDV 170

Query: 496 LQD---ICMMALGAYYKSERVVWVTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKS 552
                  C M    +       W+          + +      V + +Q  KL   +D +
Sbjct: 171 CLSYKVQCKMDFKIF-------WLN---------LKNCNSPETVLEMLQ--KLLYQIDPN 212

Query: 553 VKQ---------IDIMVIKVRGKLLMSERITICALIVID-VHAKEVVAS-------LVES 595
                       + I  I+   + L+  +     L+V+  V   +   +       L+ +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272

Query: 596 KVTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYEYLGNS-DRL-----VITPLTDRC 649
           +  QV DF   +   + ++++               +YL      L        P     
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR---- 328

Query: 650 YRTLMS--ALKLHLGGAPEGPAGTG--KTETSKDLAKAVAKQCIVFNCSDRPTFPPNLRP 705
               +S  A  +      +G A     K      L   + +  +             L P
Sbjct: 329 ---RLSIIAESIR-----DGLATWDNWKHVNCDKLTTII-ESSL-----------NVLEP 368

Query: 706 SDLIIPTNVTCMQNFFINLY-LQNDVPMMFVGPTGTGKSTIVLNLL-LNLSKDKYLPNII 763
           ++          +  F  L        +           TI+L+L+  ++ K        
Sbjct: 369 AE---------YRKMFDRLSVFPPSAHI----------PTILLSLIWFDVIKS------- 402

Query: 764 NFSARTSSNITQEMIMAKLDRRRKGVYGPAMGKKYIVFIAGSLKIKYPEKDEFVIVL-RA 822
                        +++ KL +       P      I  I   LK+K   +      L R+
Sbjct: 403 ----------DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA----LHRS 448

Query: 823 IID-VNMPKFLVQD--LPLFIGIYKDLFPG---IELPPTDRDELIEQIKINL----AKRN 872
           I+D  N+PK    D  +P ++  Y     G     +   +R  L   + ++      K  
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508

Query: 873 AQATDW------------------YIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQI 914
             +T W                  YI      YE +++ +             ++ L +I
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-------------LDFLPKI 555

Query: 915 IDHKHLYDFQTVTRVDLV---DIIYITA 939
            ++     +  + R+ L+   + I+  A
Sbjct: 556 EENLICSKYTDLLRIALMAEDEAIFEEA 583

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 76.4 bits (187), Expect = 6e-14
 Identities = 100/710 (14%), Positives = 209/710 (29%), Gaps = 238/710 (33%)

Query: 161 CKMVNDLTRSKLESFRKEVPILQCISNPGMEERHWKILSDELGQDI--TPNDQTSLKNML 218
           CK V D+ +S                          ILS E    I  + +  +    + 
Sbjct: 35  CKDVQDMPKS--------------------------ILSKEEIDHIIMSKDAVSGTLRLF 68

Query: 219 DLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGT---D 275
                 +L K EE+     +E  L  +   +++     +    P   T  YI Q     +
Sbjct: 69  WT----LLSKQEEMVQKFVEEV-LRINYKFLMSPIKTEQRQ--PSMMTRMYIEQRDRLYN 121

Query: 276 EIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQG------TWM 329
           + QV    ++ R Q                     L+ ++      + + G      TW+
Sbjct: 122 DNQVFAKYNVSRLQ-------------PYLKLRQALLELRP--AKNVLIDGVLGSGKTWV 166

Query: 330 YLEPIFSSEDIMRQMPEE-----SRNFKTVDQIWKTIM-LFVNKDPHILQATEMEDMLKN 383
            L+ +  S  +  +M  +      +N  + + + + +  L    DP+    ++    +K 
Sbjct: 167 ALD-VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK- 224

Query: 384 FNKCNLMLELIQKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEG 443
                L +  IQ  L   L+ K   +          LL +L   ++         K +  
Sbjct: 225 -----LRIHSIQAELRRLLKSKP--YEN-------CLL-VLLNVQNA--------KAWNA 261

Query: 444 INL----------LEYSDSL--EIIGMISLEGEKVALSGLIRPNDAKGLVEKWL-QQVED 490
            NL           + +D L       ISL+   + L+    P++ K L+ K+L  + +D
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT----PDEVKSLLLKYLDCRPQD 317

Query: 491 L---MIK-SLQDICMMALGAYYKSERVVWVTKWPGMVVICVSSITWTAEVEKAIQGRKLD 546
           L   ++  + + + +  +    +     W   W                  K +   KL 
Sbjct: 318 LPREVLTTNPRRLSI--IAESIRDGLATW-DNW------------------KHVNCDKLT 356

Query: 547 AMLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVASLV--ESKVTQVEDFA 604
            +++ S+  ++             +     ++     H   ++ SL+  +   + V    
Sbjct: 357 TIIESSLNVLE--------PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV- 407

Query: 605 WMSQLRYYNVNNLVNVCMITTTVQYGYEYLGNSDRLVITPLTDRCYRTLMSALKLHLGGA 664
                    VN L    ++    +   E       + I  +       L +   LH    
Sbjct: 408 ---------VNKLHKYSLV---EKQPKES-----TISIPSIYLELKVKLENEYALH---- 446

Query: 665 PEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPTFPPNLRPSDLIIPTN----------- 713
                                +  +     D    P      DLI P             
Sbjct: 447 ---------------------RSIV-----DHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480

Query: 714 ---------VTCMQNFFINL-YLQNDVPMMFVGPTGTGKSTIVLNLLLNLSK-------- 755
                    +T  +  F++  +L+  +             +I LN L  L          
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKI--RHDSTAWNASGSI-LNTLQQLKFYKPYICDN 537

Query: 756 ----DKYLPNIINFSARTSSN--------ITQEMIMAKLDRRRKGVYGPA 793
               ++ +  I++F  +   N        + +  +MA+     + ++  A
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE----DEAIFEEA 583

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 71.0 bits (173), Expect = 3e-12
 Identities = 109/689 (15%), Positives = 205/689 (29%), Gaps = 177/689 (25%)

Query: 581  IDVHAKEVVASLVES-----KVTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYEYL- 634
                 K++++   ++         V+D    S L    +++++      +     +  L 
Sbjct: 14   HQYQYKDILSVFEDAFVDNFDCKDVQDMP-KSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72

Query: 635  --GNS--DRLVITPLTDRCYRTLMSALKLHLGGAPEGPAG-TGKTETSKDLAKAVAKQCI 689
                    + V   L    Y+ LMS +K         P+  T      +D          
Sbjct: 73   SKQEEMVQKFVEEVLRIN-YKFLMSPIKTE----QRQPSMMTRMYIEQRD---------R 118

Query: 690  VFNCSDRPTFPPNLRPSDLIIPTNVTCMQNFF-INLYLQNDVPMMFV---GPTGTGKSTI 745
            ++N  D   F             NV+ +Q +  +   L    P   V   G  G+GK+ +
Sbjct: 119  LYN--DNQVFAKY----------NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166

Query: 746  VLNLLLNLSKDKYLPN-I--INFSARTSSNITQEMIMAKLDRRRKGVYGPAMGKKYIVFI 802
             L++ L+      +   I  +N     S     EM + KL  +        +   +    
Sbjct: 167  ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM-LQKLLYQ--------IDPNWTSRS 217

Query: 803  AGSLKIKYPEKDEFVIVLRAIIDVNMPKFL-----VQDLPLFIGIYKDLFPGIELPPTDR 857
              S  IK         + R +        L     VQ+   +     + F          
Sbjct: 218  DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW-----NAFNL-------- 264

Query: 858  DELIEQIKINLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDH 917
                   KI L  R  Q TD+          +    + +   E         LL + +D 
Sbjct: 265  -----SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV------KSLLLKYLDC 313

Query: 918  KHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLD 977
            +     Q + R        +    P   +I    +R   + + D++      K  T++++
Sbjct: 314  R----PQDLPRE-------VLTTNPRRLSIIAESIRDG-LATWDNWKHVNCDK-LTTIIE 360

Query: 978  WHFSKGFADSIVKLSKNIVAATFH---VYSESTKVFLPIPSKSHYVFNL----RDFAKVI 1030
                     S+  L        F    V+  S      IP+    + +L       + V+
Sbjct: 361  --------SSLNVLEPAEYRKMFDRLSVFPPSAH----IPTI---LLSLIWFDVIKSDVM 405

Query: 1031 MGLTQL-PASHCKAPDKMYKLWTHEILRVFSDRLVDEADK-QSLLD----MMKYACQNII 1084
            + + +L   S  +   K   +    I      +L +E    +S++D       +   ++I
Sbjct: 406  VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465

Query: 1085 GTKMDEFLKNKI------TDKTISADDLRSLFFG-NFLGNTIIFPG-AWACFDEFNRIEL 1136
               +D++  + I       +        R +F    FL   I     AW           
Sbjct: 466  PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA--------- 516

Query: 1137 EVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMN-PGYAGR-TELPDNLK 1194
                          L T+ +LK   ++            +I  N P Y      + D L 
Sbjct: 517  ----------SGSILNTLQQLKF--YKP-----------YICDNDPKYERLVNAILDFLP 553

Query: 1195 ----VLFRS-------VAMMVPDYAMIGE 1212
                 L  S       +A+M  D A+  E
Sbjct: 554  KIEENLICSKYTDLLRIALMAEDEAIFEE 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.5 bits (169), Expect = 8e-12
 Identities = 92/637 (14%), Positives = 188/637 (29%), Gaps = 229/637 (35%)

Query: 17  IEKSVTGNTTEEFKK----AHKEEHSKMLTAIEKSVTGNTTEEFKKAHKEVLTLLDLLQK 72
           + KS+   + EE             +  L     S      ++F         + ++L+ 
Sbjct: 41  MPKSIL--SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF---------VEEVLRI 89

Query: 73  DRT-TARQINEEQELLKMVRTNY-ETVDEM-----------LERLEPFDQLWSIILEFRE 119
           +       I  EQ    M+   Y E  D +           + RL+P+ +L   +LE R 
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 120 SSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGC-KMVNDLTRSKLESFRKE 178
           + ++ ++G                +               G  K    +      S++  
Sbjct: 150 AKNVLIDG----------------V--------------LGSGKTW--VALDVCLSYK-- 175

Query: 179 VPILQCISNPGMEERHWKILSDELGQDITPNDQTSLKNMLDLGIRNILPKLEEVSLSASK 238
              +QC  +  +    W  L+  L    +P     L+ +  L +  I P     S  +S 
Sbjct: 176 ---VQCKMDFKI---FW--LN--LKNCNSPETV--LEMLQKL-LYQIDPNWTSRSDHSSN 222

Query: 239 EA----ELSQSLNKMVTEWS---------DIK-------LDV-----VPYRDTG-TYIIQ 272
                  +   L +++             +++        ++     +  R    T  + 
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282

Query: 273 GTDEIQVMLDDHI----------------------LRAQTMRGSPY-IKPFETEMEAWES 309
                 + LD H                       L  + +  +P  +          ES
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII------AES 336

Query: 310 KLINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDP 369
            + +     D W  V         I SS +++   P E R      +++  + +F     
Sbjct: 337 -IRDGLATWDNWKHVN-CDKLTTIIESSLNVLE--PAEYR------KMFDRLSVF-PPSA 385

Query: 370 HI-----------LQATEMEDMLKNFNKCNLM---------------LELIQKGLNDY-L 402
           HI           +  +++  ++   +K +L+               LEL  K  N+Y L
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

Query: 403 EKK---RLFFPRFFFLSNDELLEILSETKDPLR------VQPHLKKIFEGINLLEYSDSL 453
            +        P+ F   +             L       +  HLK I       E+ + +
Sbjct: 446 HRSIVDHYNIPKTFDSDD--------LIPPYLDQYFYSHIGHHLKNI-------EHPERM 490

Query: 454 EIIGMISLE----GEKVALSGL---------------------IRPNDAK-----GLVEK 483
            +  M+ L+     +K+                          I  ND K       +  
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550

Query: 484 WLQQVEDLMIKS-LQDICMMAL-----GAYYKSERVV 514
           +L ++E+ +I S   D+  +AL       + ++ + V
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 2e-09
 Identities = 94/622 (15%), Positives = 189/622 (30%), Gaps = 176/622 (28%)

Query: 746  VLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYGPAMGKKYIVFIAGS 805
            V ++  ++   + + +II      S   T  +    L ++ + V           F+   
Sbjct: 38   VQDMPKSILSKEEIDHIIMSKDAVSG--TLRLFWTLLSKQEEMVQ---------KFVEEV 86

Query: 806  LKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIE-LPPTD--RDELIE 862
            L+I Y     F+  +  I        ++  +  +I     L+   +     +  R +   
Sbjct: 87   LRINYK----FL--MSPIKTEQRQPSMMTRM--YIEQRDRLYNDNQVFAKYNVSRLQPYL 138

Query: 863  QIKINLAKRNAQATDWYIEKIIQVYEM-----------ILDD-------------LNMPQ 898
            +++  L     +       K + +  +           +                LN+  
Sbjct: 139  KLRQAL--LELRP-----AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191

Query: 899  KETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNII 958
              +        +L  +    +  D    +R D    I +      +++I   L R   ++
Sbjct: 192  CNS-----PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR-----IHSIQAELRR---LL 238

Query: 959  SIDSFNEATLSKIFTSVLD--WHFS--KGFADS--IVKLSKNIVAATFHVYSESTKVFLP 1012
                +    L      VL    +      F  S  I+  ++      F   + +T + L 
Sbjct: 239  KSKPYENCLL------VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 1013 IPSKSHYVFNLRD----FAKVI-MGLTQLPASHCK-APDKMYKLWTHEILRVFSDRLVDE 1066
              S +       +      K +      LP       P ++  +   E +R         
Sbjct: 293  HHSMT---LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA--ESIRDGLATW--- 344

Query: 1067 ADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKTISADDLRSLFFGNFLGNTIIFPGAWA 1126
                   D  K+   + + T ++  L        +   + R +F    L    +FP    
Sbjct: 345  -------DNWKHVNCDKLTTIIESSLNV------LEPAEYRKMFDR--LS---VFP---- 382

Query: 1127 CFDEFNRIELEVLSVV-----AQQVQSI--QLATIAKLKKFMFEGTEISLNPTSMIFITM 1179
                 + I   +LS++        V  +  +L   + ++K   E T IS+     I++ +
Sbjct: 383  --PSAH-IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST-ISIP---SIYLEL 435

Query: 1180 NPGYAGRTEL------PDNLKVLFRSVAMMVP--D---YAMIG----------EISLYSM 1218
                     L        N+   F S  ++ P  D   Y+ IG           ++L+ M
Sbjct: 436  KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495

Query: 1219 GFQNAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAGSLKIKYPEKDEFVIVL 1278
             F + + L +KI               H      A  S+LN    LK  Y          
Sbjct: 496  VFLDFRFLEQKIR--------------HDSTAWNASGSILNTLQQLK-FY---------- 530

Query: 1279 RAIIDVNMPKF--LVQDLPLFI 1298
            +  I  N PK+  LV  +  F+
Sbjct: 531  KPYICDNDPKYERLVNAILDFL 552

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 6e-08
 Identities = 75/483 (15%), Positives = 155/483 (32%), Gaps = 110/483 (22%)

Query: 1076 MKYACQNIIGTKMDEFLKNKITDKTISADDLRSLFFGNFLGNTIIFPGAWACFDEFNRIE 1135
             +Y  ++I+    D F+ N    K +  D  +S+     + + I+        D  +   
Sbjct: 14   HQYQYKDILSVFEDAFVDN-FDCKDVQ-DMPKSILSKEEIDHIIMSK------DAVSGTL 65

Query: 1136 LEVLSVVAQQVQSIQLATIAKLKK---FMFEGTEISLNPTSMIFITMNPGYAGRTELPDN 1192
                +++++Q + +Q      L+    F+    +      SM+       Y  + +   N
Sbjct: 66   RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM----YIEQRDRLYN 121

Query: 1193 LKVLFRSVAMMVPDYAMIGEI--SLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYDYG 1250
               +F      V       ++  +L  +  + AK +   ++                  G
Sbjct: 122  DNQVFAK--YNVSRLQPYLKLRQALLEL--RPAKNV---LID-----------------G 157

Query: 1251 MRAV-KSVLNAAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDL-PLFIGIYKDLFPGI 1308
            +    K+ +     L  K   K +F I    + + N P+ +++ L  L   I  +     
Sbjct: 158  VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 1309 ELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMIL--VRHGLMVVGESFGGK-- 1364
            +     +   I  I+  L  R    +  Y   ++     +L  V++       +F     
Sbjct: 218  DHSSNIKLR-IHSIQAEL--RRLLKSKPYENCLL-----VLLNVQNAKAW--NAFNLSCK 267

Query: 1365 ---TTAYQTLADSLTDIAAKKSATMKEFKTGY------------------------KIIN 1397
               TT ++ + D L   A     ++                                  N
Sbjct: 268  ILLTTRFKQVTDFL-SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 1398 PKSITM-GQLYGEFDSASHEWRDGILAK--TFREMAVST-TPD--RKWIMFDG----PID 1447
            P+ +++  +   +  +    W+     K  T  E +++   P   RK  MFD     P  
Sbjct: 327  PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK--MFDRLSVFPPS 384

Query: 1448 AVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN---LEFASPATVSRVGMIYFE 1504
               I            L LI  ++IK S+ M ++ +      +E     +   +  IY E
Sbjct: 385  -AHIP--------TILLSLIWFDVIK-SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 1505 LKC 1507
            LK 
Sbjct: 435  LKV 437

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 9e-08
 Identities = 73/564 (12%), Positives = 162/564 (28%), Gaps = 182/564 (32%)

Query: 18  EKSVTGNTTEEFKKAHKEEHSKMLTAIEKSVTGNTTEEFKKAH------KEVLTLLDLLQ 71
           ++    N  + F K +     +    + +++      +           K  + L D+  
Sbjct: 115 QRDRLYNDNQVFAKYNVSRL-QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL-DVCL 172

Query: 72  KDRT-----------TARQINEEQELLKMVRTNYETVDEMLERLEPFDQLWSIILEF--- 117
             +              +  N  + +L+M++     +D         D   +I L     
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS--DHSSNIKLRIHSI 230

Query: 118 -RESSDLWMEGPFKGLNA----DEIKDKT-----DFMFREL---------NQL-ARKMTR 157
             E   L    P++  N       +++       +   + L         + L A   T 
Sbjct: 231 QAELRRLLKSKPYE--NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 158 APGCKMVNDLTRSKLES-FRK-------EVPILQCISNP------GMEER----HWK--- 196
                    LT  +++S   K       ++P     +NP          R     W    
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 197 -ILSDELGQDITPNDQTSLKNM---------LDLGI----RNILPKLEEVSLSASKEAEL 242
            +  D+L   I    ++SL  +           L +     +I   L  +      ++++
Sbjct: 349 HVNCDKLTTII----ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 243 SQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFET 302
              +NK+    S ++          T  I     I + L   +     +           
Sbjct: 405 MVVVNKLHKY-SLVEKQ----PKESTISIPS---IYLELKVKLENEYAL----------- 445

Query: 303 EMEAWESKLINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEESRNFKTVDQIWKTIM 362
                   +++                Y        +I +    +      +DQ + +  
Sbjct: 446 -----HRSIVDH---------------Y--------NIPKTFDSDDLIPPYLDQYFYS-- 475

Query: 363 LFVNKDPHI---LQATEMEDMLKNFNKCNLMLELIQK-------------GLNDYLEKKR 406
                  HI   L+  E  + +  F    L    +++              + + L++ +
Sbjct: 476 -------HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528

Query: 407 LFFPRFFFLSNDELLE-ILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEK 465
            +  + +   ND   E +++   D       L KI E +   +Y+D L I          
Sbjct: 529 FY--KPYICDNDPKYERLVNAILD------FLPKIEENLICSKYTDLLRI---------- 570

Query: 466 VALSGLIRPNDAKGLVEKWLQQVE 489
            AL       + + + E+  +QV+
Sbjct: 571 -ALM-----AEDEAIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 6e-05
 Identities = 46/269 (17%), Positives = 91/269 (33%), Gaps = 77/269 (28%)

Query: 7   WK--EHSKMLTAIEKSVTGNTTEEFKKAHKE-----EHSK-------ML-TAIEKSVTGN 51
           WK     K+ T IE S+      E++K           +        ++   + KS    
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 52  TTEEF-------KKAHKEVLTLLDLLQKDRTTARQINEEQELLKMVRTNY---ETVDEML 101
              +        K+  +  +++  +  + +    ++  E  L + +  +Y   +T D   
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELK---VKLENEYALHRSIVDHYNIPKTFDSDD 463

Query: 102 ERLEPFDQLW-SII---LEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTR 157
                 DQ + S I   L+  E  +      F+ +  D         FR L Q  R  + 
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTL--FRMVFLD---------FRFLEQKIRHDST 512

Query: 158 APGCK--MVNDLTRSKLESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSLK 215
           A      ++N L +  L+ ++                 +           I  ND    +
Sbjct: 513 AWNASGSILNTLQQ--LKFYKP----------------Y-----------ICDNDPK-YE 542

Query: 216 NMLDLGIRNILPKLEEVSLSASKEAELSQ 244
            +++  I + LPK+EE  +  SK  +L +
Sbjct: 543 RLVNA-ILDFLPKIEENLIC-SKYTDLLR 569

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1513
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	100.0
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	100.0
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	100.0
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	100.0
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.36
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.35
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.33
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	98.49
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	98.19
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	98.13
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.06
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	98.02
2r44_A	331	Uncharacterized protein; putative ATPase, structur	98.0
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	97.99
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.99
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.92
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.89
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.89
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.88
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.87
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.86
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	97.85
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.83
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.8
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.78
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.77
2r44_A	331	Uncharacterized protein; putative ATPase, structur	97.77
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.76
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.75
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.75
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	97.75
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.71
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	97.71
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.7
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.69
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.69
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.69
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.67
3bos_A	242	Putative DNA replication factor; P-loop containing	97.66
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.65
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.64
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	97.64
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	97.64
3pvs_A	447	Replication-associated recombination protein A; ma	97.64
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.64
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.59
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.57
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.55
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	97.54
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.54
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.53
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.52
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	97.5
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.47
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	97.46
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.44
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.43
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.43
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.42
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.4
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.37
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.36
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.35
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.33
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.33
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.33
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.31
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	97.28
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	97.27
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	97.26
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	97.26
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.24
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.21
2chq_A	319	Replication factor C small subunit; DNA-binding pr	97.2
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	97.19
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	97.17
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.17
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	97.17
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.16
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.16
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.14
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.11
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	97.1
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.1
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	97.09
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.08
3pvs_A	447	Replication-associated recombination protein A; ma	97.07
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.04
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.02
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	97.02
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.01
2chq_A	319	Replication factor C small subunit; DNA-binding pr	97.0
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.0
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.94
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.92
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.89
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.89
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.88
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.88
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.85
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.82
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.77
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.75
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.72
3co5_A	143	Putative two-component system transcriptional RES	96.72
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.67
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.65
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.64
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	96.63
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.62
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.62
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.62
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.58
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.54
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.52
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.51
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.5
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.47
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.46
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.42
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.4
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	96.38
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.35
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.33
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.26
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.25
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	96.24
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.24
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.15
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.12
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	96.05
3bos_A	242	Putative DNA replication factor; P-loop containing	96.02
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	95.98
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	95.92
3co5_A	143	Putative two-component system transcriptional RES	95.92
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	95.88
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.83
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	95.78
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.78
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	95.75
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	95.65
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	95.58
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.5
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.49
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	95.48
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.47
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	95.46
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	95.43
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.34
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	95.31
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.28
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.26
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	95.22
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.22
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.22
2eyu_A	261	Twitching motility protein PILT; pilus retraction	95.09
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.09
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	95.08
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.0
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	94.91
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	94.87
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	94.84
3f8t_A	506	Predicted ATPase involved in replication control,	94.83
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	94.82
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	94.76
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	94.6
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	94.44
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	94.41
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	94.41
2ewv_A	372	Twitching motility protein PILT; pilus retraction	94.41
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	94.4
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	94.4
3f8t_A	506	Predicted ATPase involved in replication control,	94.37
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	94.17
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	94.16
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	94.15
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	94.11
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	94.06
1tue_A	212	Replication protein E1; helicase, replication, E1E	94.06
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	93.92
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	93.92
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	93.9
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	93.82
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	93.74
1tue_A	212	Replication protein E1; helicase, replication, E1E	93.71
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	93.7
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	93.7
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	93.7
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	93.67
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	93.66
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	93.6
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	93.47
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	93.45
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	93.34
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	93.27
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	93.27
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	93.25
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	93.18
1via_A	175	Shikimate kinase; structural genomics, transferase	93.17
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	93.17
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	93.17
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	93.16
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	93.13
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	93.04
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	93.03
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	92.96
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	92.94
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	92.93
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	92.91
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	92.91
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	92.88
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	92.87
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	92.86
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	92.78
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	92.75
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	92.73
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	92.72
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	92.7
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	92.68
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	92.58
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	92.57
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	92.52
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	92.5
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	92.5
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	92.49
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	92.46
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	92.44
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	92.43
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	92.41
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	92.39
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	92.36
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	92.3
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	92.29
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	92.25
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	92.24
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	92.23
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	92.2
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	92.11
2vli_A	183	Antibiotic resistance protein; transferase, tunica	92.1
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	92.08
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	92.02
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	92.01
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	91.96
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	91.9
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	91.89
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	91.84
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	91.78
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	91.71
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	91.7
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	91.69
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	91.58
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	91.57
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	91.51
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	91.49
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	91.49
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	91.46
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	91.42
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	91.29
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	91.27
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	91.25
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	91.24
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	91.21
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	91.18
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	91.14
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	91.11
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	91.11
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	91.11
2og2_A	359	Putative signal recognition particle receptor; nuc	91.05
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	91.0
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	90.95
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	90.95
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	90.9
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	90.88
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	90.83
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	90.75
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	90.71
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	90.69
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	90.64
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	90.61
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	90.58
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	90.58
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	90.5
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	90.48
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	90.42
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	90.41
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	90.37
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	90.32
2qgz_A	308	Helicase loader, putative primosome component; str	90.07
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	90.01
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	89.92
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	89.9
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	89.87
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	89.75
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	89.74
1p9r_A	418	General secretion pathway protein E; bacterial typ	89.74
3kta_A	182	Chromosome segregation protein SMC; structural mai	89.71
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	89.69
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	89.68
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	89.65
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	89.46
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	89.43
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	89.43
4a74_A	231	DNA repair and recombination protein RADA; hydrola	89.41
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	89.38
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	89.18
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	89.13
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	89.11
1sgw_A	214	Putative ABC transporter; structural genomics, P p	89.09
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	89.06
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	89.02
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	89.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	88.93
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	88.87
2qgz_A	308	Helicase loader, putative primosome component; str	88.86
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	88.83
1b0u_A	262	Histidine permease; ABC transporter, transport pro	88.77
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	88.76
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	88.73
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	88.68
1g6h_A	257	High-affinity branched-chain amino acid transport	88.64
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	88.59
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	88.57
1ji0_A	240	ABC transporter; ATP binding protein, structural g	88.55
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	88.49
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	88.46
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	88.33
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	88.28
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	88.26
2ghi_A	260	Transport protein; multidrug resistance protein, M	88.26
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	88.25
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	88.25
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	88.23
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	88.23
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	88.22
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	88.18
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	88.14
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	88.09
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	88.06
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	88.04
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	88.03
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	88.02
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	87.94
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	87.93
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	87.89
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	87.86
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	87.7
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	87.67
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	87.56
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	87.54
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	87.52
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	87.5
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	87.49
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	87.4
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	87.39
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	87.32
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	87.32
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	87.26
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	87.21
2wji_A	165	Ferrous iron transport protein B homolog; membrane	87.18
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	87.18
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	87.14
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	87.09
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	87.06
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	87.03
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	87.01
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	87.0
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	86.95
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	86.93
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	86.79
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	86.78
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	86.74
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	86.73
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	86.72
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	86.72
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	86.68
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	86.66
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	86.62
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	86.49
2ged_A	193	SR-beta, signal recognition particle receptor beta	86.38
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	86.37
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	86.22
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	86.2
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	86.19
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	86.15
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	86.14
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	86.14
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	86.1
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	86.07
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	86.04
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	86.01
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	85.95
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	85.89
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	85.85
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	85.83
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	85.81
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	85.77
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	85.74
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	85.61
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	85.58
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	85.58
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	85.56
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	85.55
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	85.49
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	85.44
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	85.41
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	85.35
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	85.35
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	85.32
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	85.24
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	85.24
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	85.23
2cvh_A	220	DNA repair and recombination protein RADB; filamen	85.19
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	85.12
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	85.09
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	85.08
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	85.0
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	84.98
3iuy_A	228	Probable ATP-dependent RNA helicase DDX53; REC-A-l	84.89
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	84.86
1nrj_B	218	SR-beta, signal recognition particle receptor beta	84.85
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	84.84
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	84.77
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	84.75
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	84.73
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	84.71
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	84.7
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	84.69
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	84.68
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	84.67
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	84.61
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	84.41
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	84.34
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	84.34
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	84.34
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	84.33
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	84.32
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	84.29
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	84.25
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	84.24
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	84.21
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	84.19
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	84.12
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	84.09
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	84.08
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	84.08
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	84.05
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	84.01
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	83.99
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	83.88
1vec_A	206	ATP-dependent RNA helicase P54; DEAD-box protein,	83.87
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	83.85
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	83.83
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	83.79
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	83.68
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	83.67
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	83.55
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	83.53
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	83.51
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	83.48
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	83.32
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	83.25
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	83.24
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	83.13
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	83.1
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	83.06
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	83.06
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	83.01
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	83.0
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	82.91
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	82.83
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	82.79
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	82.79
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	82.75
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	82.73
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	82.72
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	82.67
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	82.67
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	82.67
2pl3_A	236	Probable ATP-dependent RNA helicase DDX10; DEAD, s	82.56
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	82.54
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	82.54
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	82.4
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	82.39
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	82.35
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	82.33
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	82.32
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	82.31
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	82.3
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	82.28
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	82.28
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	82.25
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	82.23
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	82.13
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	82.12
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	82.12
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	82.08
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	82.08
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	82.0
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	81.88
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	81.86

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=100.00  E-value=2e-209  Score=2178.10  Aligned_cols=999  Identities=35%  Similarity=0.637  Sum_probs=896.0

Q ss_pred             CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHH
Q psy4730          90 VRTNYETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTR  169 (1513)
Q Consensus        90 ~~t~f~~L~~l~~el~~~~~lW~~~~~w~~~~~~w~~~pf~~ld~~~i~~~l~~~~~~l~~l~k~l~~~~~~~~v~~~l~  169 (1513)
                      +...|..+..+.+|+..++.+|..+..|+...+.|.++||.++|++.+++.++.+.+.+.++++.+++++    ++..++
T Consensus        17 ~~~~~~~l~~~~~el~~l~~~w~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~l~   92 (3245)
T 3vkg_A           17 DDDKGGGKVPVEEEIQDLKAVWVELSNTWQEIDSLKETAWSAIIPRKVRKSLEDTLQKLKNLPNRIRQYS----AFDHAQ   92 (3245)
T ss_dssp             ------------------------------CHHHHHHCCTTTCCC-----------------------------CHHHHH
T ss_pred             chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHHHHhCcchhhhhH----HHHHHH
Confidence            4457889999999999999999999999999999999999999999999999999999999999999887    578999


Q ss_pred             HHHHHHHhhhHHHHHhcCCcccHHhHHHHHHHhCCCcCCCccccHHHHHhhchhhhhhHHHHHHHHhHhHHHHHHHHHHH
Q psy4730         170 SKLESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSLKNMLDLGIRNILPKLEEVSLSASKEAELSQSLNKM  249 (1513)
Q Consensus       170 ~~I~~f~~~lpll~~L~np~lk~RHW~~I~~~lg~~~~~~~~~TL~~Ll~l~l~~~~~~I~~I~~~A~~E~~iE~~L~~I  249 (1513)
                      +.|++|+..+|+|..|+||+||+|||++|++.+|.++.+ +++||++|+++++.+|.+.|++|+..|++|+.||+.|++|
T Consensus        93 ~~i~~f~~~lpll~~L~n~~~~~RHW~~l~~~~g~~~~~-~~~tL~~ll~~~l~~~~~~i~~I~~~A~~E~~iE~~L~~i  171 (3245)
T 3vkg_A           93 NLIKIYLKGNAIITDLHSEAIKDRHWKILKKRLNTNWII-TELTLGSIWDSDLARNENIYREVITAAQGEIALEEFLKGV  171 (3245)
T ss_dssp             HHHHHHHHHTHHHHHTTSTTCCHHHHHHHHHHTTCCCCT-TSCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHhCCccccHHHHHHHHHHhCCCCCc-cCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998766 5899999999999999999999999999999999999999


Q ss_pred             HHhhcccEEEeEEeccCCceeecChHHHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4730         250 VTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWM  329 (1513)
Q Consensus       250 ~~~W~~~~f~~~~~~~~~~~il~~~dei~~~Led~l~~L~~m~~S~~~~~~~~~i~~we~kL~~~~~iL~~w~~vQ~~W~  329 (1513)
                      ++.|++++|++.+|++ ++++|+++||+++.||||++.|++|++|||+++|++++.+|+++|..++++|+.|.+||++|+
T Consensus       172 ~~~W~~~~f~~~~~~~-~~~ll~~~dei~~~led~~~~l~sm~~S~~~~~f~~~v~~We~~L~~~~~il~~W~~vQ~~W~  250 (3245)
T 3vkg_A          172 REFWTTLELDLVNYQR-KCKLVRGWDDLFNKLAEHLNSISAMKMSPYYKVFEEEANHWDDRLNKVRSLLDVWIDVQRRWV  250 (3245)
T ss_dssp             HHHHHHCBCEEEEETT-TEEEEECHHHHHHHHHHHHHHHHHTTSSTTTTGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhceEEEEEeccC-CeeEeCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999987 578999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCC-chhHhhhCHHHHHhHHhhHHHHHHHHHHhhcCCceeeecccchHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy4730         330 YLEPIFS-SEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRLF  408 (1513)
Q Consensus       330 yL~~iF~-s~di~~~Lp~e~~~F~~v~~~~~~i~~~~~~~~~v~~~~~~~~l~~~L~~~~~~Le~I~k~L~~yLe~KR~~  408 (1513)
                      ||+|||+ |+||++|||.|+++|+.||+.|+.+|+.+.++|+|+.+|..+++++.|+++++.|+.|+|+|++|||+||..
T Consensus       251 yLe~IF~~s~DI~~qLP~E~~rF~~vd~~~~~im~~~~~~~~v~~~~~~~~~~~~L~~~~~~Le~iqk~L~~yLE~KR~~  330 (3245)
T 3vkg_A          251 YLEGIFSGSGDINQLLPAESTRFKSINSEFIAILKKVSGAPLILEVLAIERIQQTMERLSDLLGKVQKALGEYLERQRSA  330 (3245)
T ss_dssp             HHHHHC-----CTTTSHHHHHHHHHHHHHHHHHHHHHHHSCBHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCcHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceEeecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999996 799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccChHHHHHHHhcCCCcchHHHHHHHHhhcccceecccc-eeEEEeeecCCcEEEccCcccCCCCCCcHHHHHHH
Q psy4730         409 FPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDS-LEIIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQ  487 (1513)
Q Consensus       409 FPRfyFLSd~eLL~ils~~~dp~~i~~~l~k~F~gI~~l~~~~~-~~I~g~~s~~GE~l~l~~~I~~~~~~g~ve~WL~~  487 (1513)
                      |||||||||+|||+|||+++||..+|+||+|||+||++|.|+++ ..|+||+|.+||+|+|.+||++.. .|+||.||.+
T Consensus       331 FPRFyFlSd~eLLeILs~~~dp~~vq~hl~K~F~~I~~l~f~~~~~~i~~m~S~eGE~v~~~~~v~~~~-~~~ve~WL~~  409 (3245)
T 3vkg_A          331 FARFYFVGDEDLLEIIGNSKDIIKIQKHFRKMFAGLANLTLDDEKTTIIGMSSAEGETVTFKKPISIAN-GPKIHEWLTM  409 (3245)
T ss_dssp             SGGGGGSCHHHHHHHHHGGGCGGGTGGGGGGTCSSCCEEEECTTSCEEEEEECTTSCEEEEEEEEESSS-SCCHHHHHHH
T ss_pred             CchhhccCcHHHHHHHHcCCChHHHHHHHHHHHhhhheEEecCCCCEEEEEEcCCCCEEEeCCccccCC-CCCHHHHHHH
Confidence            99999999999999999999999999999999999999999764 457899999999999999986532 4899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh------ccchhhhhhcCCchhhhhhhhhhhcHHHHHHHhhc---------cHHHHHHHH
Q psy4730         488 VEDLMIKSLQDICMMALGAYY------KSERVVWVTKWPGMVVICVSSITWTAEVEKAIQGR---------KLDAMLDKS  552 (1513)
Q Consensus       488 le~~mk~sL~~~i~~~~~~~~------~~~~~~Wi~~~p~Qv~ll~~qI~wT~~ve~al~~~---------~l~~~~~~~  552 (1513)
                      ||++|+.||+..+.+|+.+|.      ..++.+|+.+||+||++++.||+||++||+||.+.         .++.+.+++
T Consensus       410 le~~m~~tl~~~~~~~~~~~~~~~~~~~~~~~~w~~~~p~Qv~l~~~qi~wT~~ve~al~~~~~~~~~~~~~l~~~~~~~  489 (3245)
T 3vkg_A          410 VESEMKSTLATLLSESLQHFNQVDVNDHSKYSEWVDNYPTQLVLLTSQIVWSTQVDQALGGGTLQQSKIQEQLQSIEQTT  489 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCCTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccCcccHHHHHHHCcHHHHHHHHHheeHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence            999999999999999999987      35689999999999999999999999999999853         488899999


Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcchHHHHHHHH-cccCCcccchhhhhcceEeecC------eEEEEEcce
Q psy4730         553 VKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVASLVE-SKVTQVEDFAWMSQLRYYNVNN------LVNVCMITT  625 (1513)
Q Consensus       553 ~~~l~~l~~~~r~~l~~~~r~ki~~LI~~~vh~rDiv~~L~~-~~v~~~~~f~W~~qlRyy~~~~------~i~v~~~~~  625 (1513)
                      ..+|+.++.++++++++.+|.|+++||+++||+|||++.|++ .++.+.++|+|++||||||+++      .|.|+++++
T Consensus       490 ~~~l~~l~~~v~~~l~~~~R~kl~~Lit~~VH~RDvv~~L~~~~~v~~~~dF~W~~qlRyy~~~~~~~~~~~~~v~~~~~  569 (3245)
T 3vkg_A          490 QMILNNLADSVLQDLSAQKRKKFEHLITELVHQRDVVRQLQKCKNLTGNKDFDWLYHMRYYYDATQENVLHKLVIHMANA  569 (3245)
T ss_dssp             HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCSTTCHHHHTSEEEEECSSSSSSGGGEEEEETTE
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHhhhheeeccccCCcCceEEEEEcCc
Confidence            999999999999999999999999999999999999999999 9999999999999999999864      599999999


Q ss_pred             EEEeeeeccCCccceeecccchHHHHHHHHHHHhhcCCCCCCCCCCCCccchHHHHHHhcCEEEEEEcCCCCCCCCCCCC
Q psy4730         626 TVQYGYEYLGNSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPTFPPNLRP  705 (1513)
Q Consensus       626 ~~~YgyEY~G~~~rlV~Tplt~r~~~~l~~al~~~~g~~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~~~f~~~~~~  705 (1513)
                      +|+|||||+|+++|||+||||||||+++++|+++++||+|.|||||||||++|+||+++|++|++|||+++++       
T Consensus       570 ~f~YgyEYlG~~~rLViTPLTdrcy~tl~~Al~~~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d-------  642 (3245)
T 3vkg_A          570 TFYYGFEYLGIGERLVQTPLTDRCYLTLTQALESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD-------  642 (3245)
T ss_dssp             EEECCCCCCCSCCCCCCCHHHHHHHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC-------
T ss_pred             eecCccccCCCCCCCcCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC-------
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988       


Q ss_pred             ccccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeeccccccChhHHHHHHHHHhhhh
Q psy4730         706 SDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRR  785 (1513)
Q Consensus       706 ~~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t~~~~~q~~i~~~~~~~  785 (1513)
                                                                          +.                          
T Consensus       643 ----------------------------------------------------~~--------------------------  644 (3245)
T 3vkg_A          643 ----------------------------------------------------LQ--------------------------  644 (3245)
T ss_dssp             ----------------------------------------------------HH--------------------------
T ss_pred             ----------------------------------------------------HH--------------------------
Confidence                                                                10                          


Q ss_pred             ccCCCCCCCCceEEEEecccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCcCCCCCChhHHHHHHH
Q psy4730         786 RKGVYGPAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIK  865 (1513)
Q Consensus       786 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  865 (1513)
                                                                                                      
T Consensus       645 --------------------------------------------------------------------------------  644 (3245)
T 3vkg_A          645 --------------------------------------------------------------------------------  644 (3245)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhhhcccchhHHHHHHHHHHHHHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCCC
Q psy4730         866 INLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMN  945 (1513)
Q Consensus       866 ~~~~~~~~~~~~~~~~~~~~~~~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~~  945 (1513)
                                                                                                      
T Consensus       645 --------------------------------------------------------------------------------  644 (3245)
T 3vkg_A          645 --------------------------------------------------------------------------------  644 (3245)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCChhhhccceEeecCCCChHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccccchhh
Q psy4730         946 TITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRD 1025 (1513)
Q Consensus       946 ~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hy~fnlrd 1025 (1513)
                                                                                                     .
T Consensus       645 -------------------------------------------------------------------------------~  645 (3245)
T 3vkg_A          645 -------------------------------------------------------------------------------A  645 (3245)
T ss_dssp             -------------------------------------------------------------------------------H
T ss_pred             -------------------------------------------------------------------------------H
Confidence                                                                                           0


Q ss_pred             HHHHHhhhcccCCcccCChhhHHHhhhhhHHHHHhhhcCChhhHHHHHHHHHHHHHhhhhhhHHHHhhccccCcccchhh
Q psy4730        1026 FAKVIMGLTQLPASHCKAPDKMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKTISADD 1105 (1513)
Q Consensus      1026 ~~~~~~g~~~~~~~~~~~~~~~~rl~~hE~~rvf~drl~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1105 (1513)
                      +.|++.|+.+                                                                      
T Consensus       646 ~g~i~~G~~~----------------------------------------------------------------------  655 (3245)
T 3vkg_A          646 MSRIFVGLCQ----------------------------------------------------------------------  655 (3245)
T ss_dssp             HHHHHHHHHH----------------------------------------------------------------------
T ss_pred             HHHHHhhHhh----------------------------------------------------------------------
Confidence            0111224332                                                                      


Q ss_pred             cccceeccccccccccCCccccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccc-cceEEecCceEEEEEecCCCC
Q psy4730        1106 LRSLFFGNFLGNTIIFPGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFE-GTEISLNPTSMIFITMNPGYA 1184 (1513)
Q Consensus      1106 ~~~l~f~~fv~~~~~~~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~-g~~i~~~p~~~iFiTmNp~y~ 1184 (1513)
                                      +|+|+|||||||++.+|||++++++..|+.++......+.++ |+.|+++|+|++||||||||+
T Consensus       656 ----------------~GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~  719 (3245)
T 3vkg_A          656 ----------------CGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYA  719 (3245)
T ss_dssp             ----------------HTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGG
T ss_pred             ----------------cCcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCcc
Confidence                            899999999999999999999999999999999999999999 999999999999999999999


Q ss_pred             CCCCCchhHHhhhhcccccCCChHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhhccCCCCCCcchhhHHHHHHHhhhh
Q psy4730        1185 GRTELPDNLKVLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAGSL 1264 (1513)
Q Consensus      1185 gr~~LP~nLk~lFR~v~~~~PD~~~I~ei~L~~~GF~~a~~la~ki~~~~~l~~~~ls~q~~yd~glR~lk~vl~~a~~l 1264 (1513)
                      ||++||+|||++||||+|+.||+.+|+|++|++.||.+|+.||+|++++|++|++|||+|.|||||||++|+||+.||++
T Consensus       720 gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~L~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~l  799 (3245)
T 3vkg_A          720 GRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGI  799 (3245)
T ss_dssp             GCCCSCHHHHTTEEEEECCSCCHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred             CcccChHHHHhhcEEEEEeCCCHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhC--------CC------------ChHHHHHHHHHHhhcCCCCcccchhhHHHHhhccCCCCCCCCCCchHHHHHHHH
Q psy4730        1265 KIKY--------PE------------KDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKI 1324 (1513)
Q Consensus      1265 ~~~~--------~~------------~~E~~~l~~ai~~~~~pkl~~~d~~lf~~li~~~Fp~~~~~~~~~~~l~~~i~~ 1324 (1513)
                      +|+.        |+            ..|+.++++||+++|+|||+.+|.++|.++++|+||+++.|..+++.+.++|.+
T Consensus       800 kr~~~~~~~~~~~~~~~~~~~~~~~~~~E~~illralrd~nlpKl~~~D~plF~~li~DlFPgv~~~~~~~~~l~~ai~~  879 (3245)
T 3vkg_A          800 KRKCQPPQLPPITDAESKTKADQIYCQYEIGVLLNSINDTMIPKLVADDIPLIQSLLLDVFPGSQLQPIQMDQLRKKIQE  879 (3245)
T ss_dssp             HHSCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCGGGHHHHHHHHHHHSTTCCCCCCCCHHHHHHHHH
T ss_pred             HHhhhhhcccccccccccccccccccccHHHHHHHHHHHhccCCCchhhHHHHHHHHHHhCCCCCCCCCchHHHHHHHHH
Confidence            9988        55            579999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCccccHHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChh
Q psy4730        1325 NLAKRNAQATDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMG 1404 (1513)
Q Consensus      1325 ~~~~~~l~~~~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~ 1404 (1513)
                      +|.+.||++++.|+.||+|||+++.+||||||||||||||||||++|++|++++.+.        ++..++|||||+|++
T Consensus       880 ~~~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~--------~~~~~~iNPKait~~  951 (3245)
T 3vkg_A          880 IAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNI--------KSEAHVMDPKAITKD  951 (3245)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTC--------EEEEEEECTTTSCHH
T ss_pred             HHHHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCC--------CceEEEECCCCCchh
Confidence            999999999999999999999999999999999999999999999999999987542        367899999999999


Q ss_pred             hccccccCCCCCCccCHHHHHHHHhhcc---CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEE
Q psy4730        1405 QLYGEFDSASHEWRDGILAKTFREMAVS---TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLI 1481 (1513)
Q Consensus      1405 eL~G~~~~~t~eW~DG~l~~~lR~~~~~---~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~i 1481 (1513)
                      ||||++||+|+||+||+|++++|+++.+   +..+++||||||||||.|||||||||||||+|||||||||++||+|+++
T Consensus       952 eLyG~~d~~T~EW~DGvls~i~R~~~~~~~~~~~~~~WIvfDGpVDa~WIEnlNsVLDDNK~LtL~nGErI~l~~~~~li 1031 (3245)
T 3vkg_A          952 QLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTKRHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVM 1031 (3245)
T ss_dssp             HHHEEECTTTCCEEECHHHHHHHHHHTTSSSGGGEEEEEEEESCCCHHHHTTTHHHHSSSCEECCTTSCCEECCTTEEEE
T ss_pred             hhceeecCCCCeeeccHHHHHHHHHHhcccCCCCCceEEEECCCCCHHHHHHHHHHhcCCCeeecCCCCeeecCCCCEEE
Confidence            9999999999999999999999998743   3456899999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCCcchhhccEEEEeeCCCCccccC
Q psy4730        1482 FECENLEFASPATVSRVGMIYFELKCISWTTF 1513 (1513)
Q Consensus      1482 FE~~~l~~asPatvsRcg~v~~~~~~~~w~~~ 1513 (1513)
                      |||+||++||||||||||||||+++++||+|+
T Consensus      1032 FEv~dL~~ASPATVSRcGmVy~~~~~l~~~~~ 1063 (3245)
T 3vkg_A         1032 FEVQDLKYATLATISRCGMVWFSEEILTTQMI 1063 (3245)
T ss_dssp             EEESCCTTCCHHHHHTSEEEECCTTSSCHHHH
T ss_pred             EEeccccccChhhheeeeEEEEcccccCchHH
Confidence            99999999999999999999999999999974

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=100.00  E-value=5.7e-174  Score=1822.19  Aligned_cols=855  Identities=30%  Similarity=0.498  Sum_probs=808.2

Q ss_pred             HHhHhHHHHHHHHHHHHHhhcccEEEeEEeccCCceeecChHHHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHH
Q psy4730         234 LSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLIN  313 (1513)
Q Consensus       234 ~~A~~E~~iE~~L~~I~~~W~~~~f~~~~~~~~~~~il~~~dei~~~Led~l~~L~~m~~S~~~~~~~~~i~~we~kL~~  313 (1513)
                      .+|++|+.||+.|++|+++|++++|++.+|++ ++++++++|++++.|+||++.|++|++|||+++|++++.+|+++|..
T Consensus       215 ~~AskE~~iE~~L~~i~~~W~~~~f~~~~~~~-~~~~l~~~d~i~~~l~d~~~~l~~m~~s~~~~~f~~~~~~w~~~L~~  293 (2695)
T 4akg_A          215 PPKSDEFVIEKSLNRIKKFWKEAQYEVIEHSS-GLKLVREWDVLEQACKEDLEELVSMKASNYYKIFEQDCLDLESKLTK  293 (2695)
T ss_dssp             CC----CHHHHHHHHHHHHHTSCCCEEEECSS-SCEEEECTHHHHHHHHHHHHHHHHTSSCSTTTTTHHHHHHHHHHHHH
T ss_pred             cccchhhhHHHHHHHHHHHhhceEEEEEEecC-CeEEECCHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence            67999999999999999999999999999974 78999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccC-CchhHhhhCHHHHHhHHhhHHHHHHHHHHhhcCCceeeecccchHHHHHHHHHHHHH
Q psy4730         314 MQDILDIWLQVQGTWMYLEPIF-SSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLE  392 (1513)
Q Consensus       314 ~~~iL~~w~~vQ~~W~yL~~iF-~s~di~~~Lp~e~~~F~~v~~~~~~i~~~~~~~~~v~~~~~~~~l~~~L~~~~~~Le  392 (1513)
                      ++++|+.|.+||++|+||+||| +|+||++|||.|+++|+.||+.|+.+|+.+.++|+|+++|..+++++.|+++++.|+
T Consensus       294 ~~~~l~~w~~vQ~~W~yLe~iF~~s~di~~qLp~e~~~F~~vd~~~~~im~~~~~~~~v~~~~~~~~~~~~L~~~~~~Le  373 (2695)
T 4akg_A          294 LSEIQVNWVEVQFYWLDLYGILGENLDIQNFLPLETSKFKSLTSEYKMITTRAFQLDTTIEVIHIPNFDTTLKLTIDSLK  373 (2695)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCSHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCCSGGGGGSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhcCcHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCeeeecccccHHHHHHHHHHHHH
Confidence            9999999999999999999999 799999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccCCcccccChHHHHHHHhcCCCcchHHHHHHHHhhcccceecccceeEEEeeecCCcEEEccCcc
Q psy4730         393 LIQKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEKVALSGLI  472 (1513)
Q Consensus       393 ~I~k~L~~yLe~KR~~FPRfyFLSd~eLL~ils~~~dp~~i~~~l~k~F~gI~~l~~~~~~~I~g~~s~~GE~l~l~~~I  472 (1513)
                      .|+|+|++|||+||..|||||||||+|||+|||+++||..+|+|++|||+||++|.|++ ..|+||+|.+||+|+|.+||
T Consensus       374 ~iqk~L~~yLe~KR~~FPRFyFlsd~eLLeiLs~~~dp~~vq~hl~k~F~~i~~l~f~~-~~i~~m~s~egE~v~~~~~v  452 (2695)
T 4akg_A          374 MIKSSLSTFLERQRRQFPRFYFLGNDDLLKIIGSGKHHDQVSKFMKKMFGSIESIIFLE-DFITGVRSVEGEVLNLNEKI  452 (2695)
T ss_dssp             HHHHHHHHHHHHHHHHSTTHHHHCHHHHHHHHHTTTTSGGGHHHHHHHTSSEEEEEECS-SEEEEEEETTSCEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhhCCcceecCcHHHHHHHhcCCCHHHHHHHHHHHhhhhhhEEecC-ceEEEEEcCCCCEEEeCCce
Confidence            99999999999999999999999999999999999999999999999999999999995 48999999999999999998


Q ss_pred             cCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhhhhcCCchhhhhhhhhhhcHHHHHHHhhccHHHHHHH
Q psy4730         473 RPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYK-SERVVWVTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDK  551 (1513)
Q Consensus       473 ~~~~~~g~ve~WL~~le~~mk~sL~~~i~~~~~~~~~-~~~~~Wi~~~p~Qv~ll~~qI~wT~~ve~al~~~~l~~~~~~  551 (1513)
                      .+. ..|+||.||.+||++|+.||++.+.+|+.+|.. .++.+|+.+||+||++++.||+||+++|+|+.++.+..+.+.
T Consensus       453 ~~~-~~~~ve~WL~~le~~m~~tl~~~~~~~~~~~~~~~~~~~w~~~~p~Qv~l~~~qi~wt~~ve~a~~~~~~~~~~~~  531 (2695)
T 4akg_A          453 ELK-DSIQAQEWLNILDTEIKLSVFTQFRDCLGQIKDGTDIEVVVSKYIFQAILLSAQVMWTELVEKCLQTNQFSKYWKE  531 (2695)
T ss_dssp             ECC-TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             ecC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHChHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            754 246899999999999999999999999999986 789999999999999999999999999999998888888888


Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcchHHHHHHHHcccCCcccchhhhhcceEeecC------eEEEEEcce
Q psy4730         552 SVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYYNVNN------LVNVCMITT  625 (1513)
Q Consensus       552 ~~~~l~~l~~~~r~~l~~~~r~ki~~LI~~~vh~rDiv~~L~~~~v~~~~~f~W~~qlRyy~~~~------~i~v~~~~~  625 (1513)
                      +.++++.+...+ +.+++..|.|+++||++++|+|||++.|++.++.+.++|+|++||||||+++      .|.|+++++
T Consensus       532 ~~~~~~~l~~~~-~~~~~~~r~k~~~li~~~vh~rDvv~~l~~~~v~~~~~f~W~~qlR~y~~~~~~~~~~~~~v~~~~~  610 (2695)
T 4akg_A          532 VDMKIKGLLDKL-NKSSDNVKKKIEALLVEYLHFNNVIGQLKNCSTKEEARLLWAKVQKFYQKNDTLDDLNSVFISQSGY  610 (2695)
T ss_dssp             HHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHSCEEEECSSCSCGGGTEEEEETTE
T ss_pred             HHHHHHHHHHHh-hccCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchHhHHhcceEEEcCccccccceeEEEEcCe
Confidence            888888887655 4678889999999999999999999999999999999999999999999865      589999999


Q ss_pred             EEEeeeeccCCccceeecccchHHHHHHHHHHHhhcCCCCCCCCCCCCccchHHHHHHhcCEEEEEEcCCCCCCCCCCCC
Q psy4730         626 TVQYGYEYLGNSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPTFPPNLRP  705 (1513)
Q Consensus       626 ~~~YgyEY~G~~~rlV~Tplt~r~~~~l~~al~~~~g~~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~~~f~~~~~~  705 (1513)
                      +|+|||||+|+++|||+||+|+|||.++++|+++++||+|.||||||||+++|+||+++|++|++|||+++++       
T Consensus       611 ~~~YgyEYlG~~~rlViTPltdr~~~tl~~Al~~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld-------  683 (2695)
T 4akg_A          611 LLQYKFEYIGIPERLIYTPLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD-------  683 (2695)
T ss_dssp             EEECCCCCCCSCCCCCCCHHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC-------
T ss_pred             EeeccccccCCCCcceecHHHHHHHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC-------
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999887       


Q ss_pred             ccccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeeccccccChhHHHHHHHHHhhhh
Q psy4730         706 SDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRR  785 (1513)
Q Consensus       706 ~~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t~~~~~q~~i~~~~~~~  785 (1513)
                                                                          +                           
T Consensus       684 ----------------------------------------------------~---------------------------  684 (2695)
T 4akg_A          684 ----------------------------------------------------Y---------------------------  684 (2695)
T ss_dssp             ----------------------------------------------------H---------------------------
T ss_pred             ----------------------------------------------------h---------------------------
Confidence                                                                1                           


Q ss_pred             ccCCCCCCCCceEEEEecccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCcCCCCCChhHHHHHHH
Q psy4730         786 RKGVYGPAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIK  865 (1513)
Q Consensus       786 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  865 (1513)
                                                                                                      
T Consensus       685 --------------------------------------------------------------------------------  684 (2695)
T 4akg_A          685 --------------------------------------------------------------------------------  684 (2695)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhhhcccchhHHHHHHHHHHHHHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCCC
Q psy4730         866 INLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMN  945 (1513)
Q Consensus       866 ~~~~~~~~~~~~~~~~~~~~~~~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~~  945 (1513)
                                                                                                      
T Consensus       685 --------------------------------------------------------------------------------  684 (2695)
T 4akg_A          685 --------------------------------------------------------------------------------  684 (2695)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCChhhhccceEeecCCCChHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccccchhh
Q psy4730         946 TITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRD 1025 (1513)
Q Consensus       946 ~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hy~fnlrd 1025 (1513)
                                                                                                    .|
T Consensus       685 ------------------------------------------------------------------------------~~  686 (2695)
T 4akg_A          685 ------------------------------------------------------------------------------QV  686 (2695)
T ss_dssp             ------------------------------------------------------------------------------HH
T ss_pred             ------------------------------------------------------------------------------hH
Confidence                                                                                          00


Q ss_pred             HHHHHhhhcccCCcccCChhhHHHhhhhhHHHHHhhhcCChhhHHHHHHHHHHHHHhhhhhhHHHHhhccccCcccchhh
Q psy4730        1026 FAKVIMGLTQLPASHCKAPDKMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKTISADD 1105 (1513)
Q Consensus      1026 ~~~~~~g~~~~~~~~~~~~~~~~rl~~hE~~rvf~drl~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1105 (1513)
                      +.+++.|+.                                                                       
T Consensus       687 lg~~~~g~~-----------------------------------------------------------------------  695 (2695)
T 4akg_A          687 LSRLLVGIT-----------------------------------------------------------------------  695 (2695)
T ss_dssp             HHHHHHHHH-----------------------------------------------------------------------
T ss_pred             hhHHHHHHH-----------------------------------------------------------------------
Confidence            011111322                                                                       


Q ss_pred             cccceeccccccccccCCccccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccccceEEecCceEEEEEecCCCCC
Q psy4730        1106 LRSLFFGNFLGNTIIFPGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPGYAG 1185 (1513)
Q Consensus      1106 ~~~l~f~~fv~~~~~~~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g~~i~~~p~~~iFiTmNp~y~g 1185 (1513)
                                     .+|+|+|||||||++++|||++++++..|+.++..+...+.++|+.+++||+|++|+||||||+|
T Consensus       696 ---------------~~Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g  760 (2695)
T 4akg_A          696 ---------------QIGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNG  760 (2695)
T ss_dssp             ---------------HHTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSS
T ss_pred             ---------------hcCCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccC
Confidence                           27999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchhHHhhhhcccccCCChHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhhccCCCCCCcchhhHHHHHHHhhhhh
Q psy4730        1186 RTELPDNLKVLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAGSLK 1265 (1513)
Q Consensus      1186 r~~LP~nLk~lFR~v~~~~PD~~~I~ei~L~~~GF~~a~~la~ki~~~~~l~~~~ls~q~~yd~glR~lk~vl~~a~~l~ 1265 (1513)
                      |++||+|||++||||+|+.||...|+|++|++.||.+++.||+|++.+|++|++++|+|.|||||||++|+||+.||.++
T Consensus       761 ~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l~s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lk  840 (2695)
T 4akg_A          761 RSELPENLKKSFREFSMKSPQSGTIAEMILQIMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLI  840 (2695)
T ss_dssp             SCCCCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred             cccccHHHHhheEEEEeeCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCChHHHHHHHHHHhhcCCCCcccchhhHHHHhhccCCCCCCCCCCchHHHHHHHHHHHHcCccccHHHHHHHHHHH
Q psy4730        1266 IKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVY 1345 (1513)
Q Consensus      1266 ~~~~~~~E~~~l~~ai~~~~~pkl~~~d~~lf~~li~~~Fp~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~k~~qL~ 1345 (1513)
                      +..+  .|+.++++|++++++||++.+|.++|.++++|+||++..| .+++.+.+++.+.+.+.++++++.|+.|++|||
T Consensus       841 r~~~--~e~~~l~~al~~~~lpk~~~~D~~lf~~li~dlFp~~~~~-~~~~~l~~~i~~~~~~~~l~~~~~~~~K~~ql~  917 (2695)
T 4akg_A          841 SEFG--EGEKTVVESLKRVILPSLGDTDELVFKDELSKIFDSAGTP-LNSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFY  917 (2695)
T ss_dssp             HHSC--SSHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHCCCCSCC-SSSSHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             ccCC--cHHHHHHHHHHHhccccCchhhHHHHHHHHHHhCCCCCCC-CChHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence            9885  6778999999999999999999999999999999999888 788899999999999999999999999999999


Q ss_pred             HHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHH
Q psy4730        1346 EMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKT 1425 (1513)
Q Consensus      1346 ~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~ 1425 (1513)
                      +++.+||||||||||||||||+|++|++|++++.+.        ++.+++||||++|++||||++|++|++|+||+|+++
T Consensus       918 e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~--------~~~~~~inpk~~t~~el~G~~d~~t~eW~DGils~~  989 (2695)
T 4akg_A          918 YMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGH--------ANVVYVIDTKVLTKESLYGSMLKATLEWRDGLFTSI  989 (2695)
T ss_dssp             HHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCC--------EEEEEEECTTTSCHHHHTTEECTTTCCEECCSHHHH
T ss_pred             HHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcCC--------CceEEEeCCCCCCHHHhcceecCCCCeEecChHHHH
Confidence            999999999999999999999999999999987543        357889999999999999999999999999999999


Q ss_pred             HHHhhccCC----CCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEE
Q psy4730        1426 FREMAVSTT----PDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMI 1501 (1513)
Q Consensus      1426 lR~~~~~~~----~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v 1501 (1513)
                      +|+++.+..    ..++|||||||+||.|||+|||||||||+|||||||||++||+|+++|||+||++||||||||||||
T Consensus       990 ~R~~~~~~~~~~~~~~~WivfDG~vD~~WIE~LNsVLDDNk~L~L~ngErI~l~~~~~llFEv~dL~~ASPATVSRcGmv 1069 (2695)
T 4akg_A          990 LRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFRILFETDNLDHTTPATITRCGLL 1069 (2695)
T ss_dssp             HHHHHTCCCSSCSSEEEEEEECSCCCHHHHHTTHHHHSTTCEEECSSSCEEECCSSCEEEEEESCCTTSCHHHHHHSEEE
T ss_pred             HHHHHhccccccCCCCeEEEECCCCCHHHHHHHHHHhcCCCccccCCCCEEecCCCcEEEEEecccccCCccceeeeeEE
Confidence            999876432    2389999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCccccC
Q psy4730        1502 YFELKCISWTTF 1513 (1513)
Q Consensus      1502 ~~~~~~~~w~~~ 1513 (1513)
                      |++++++||+|+
T Consensus      1070 y~~~~~l~~~~~ 1081 (2695)
T 4akg_A         1070 WFSTDVCSISSK 1081 (2695)
T ss_dssp             ECCSCSSCHHHH
T ss_pred             EecCCcCChHHH
Confidence            999999999984

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=100.00  E-value=9.3e-53  Score=592.84  Aligned_cols=355  Identities=23%  Similarity=0.386  Sum_probs=305.2

Q ss_pred             CCCccccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeeccccccChhHHHHHHHHHh
Q psy4730         703 LRPSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKL  782 (1513)
Q Consensus       703 ~~~~~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t~~~~~q~~i~~~~  782 (1513)
                      ..+.+++|||.||+|+.++++.++..++||||+||||||||+++.++++++.+  +....+|||++|+++.+|..+++++
T Consensus      1278 ~~~~~ilVPT~DTvR~~~ll~~ll~~~~pvLL~GptGtGKT~li~~~L~~l~~--~~~~~infS~~Tta~~l~~~~e~~~ 1355 (3245)
T 3vkg_A         1278 VASPDVVIPTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTMTLTSTLRAFPD--FEVVSLNFSSATTPELLLKTFDHHC 1355 (3245)
T ss_dssp             TTCTTCCCCCHHHHHHHHHHHHHHHTTCCCEEESSTTSSHHHHHHHHGGGCTT--EEEEEECCCTTCCHHHHHHHHHHHE
T ss_pred             CCcccceecchHHHHHHHHHHHHHHCCCcEEEECCCCCCHHHHHHHHHHhCCC--CceEEEEeeCCCCHHHHHHHHhhcc
Confidence            46789999999999999999999999999999999999999999999987754  4457899999999999999999999


Q ss_pred             hhhcc---C-CCCCCC-CceEEEEecccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCcCCCCCCh
Q psy4730         783 DRRRK---G-VYGPAM-GKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDR  857 (1513)
Q Consensus       783 ~~~~~---~-~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  857 (1513)
                      +++++   | .|+|+. |+++|+|+                                                       
T Consensus      1356 e~~~~~~~G~~~~p~~~Gk~~VlFi------------------------------------------------------- 1380 (3245)
T 3vkg_A         1356 EYKRTPSGETVLRPTQLGKWLVVFC------------------------------------------------------- 1380 (3245)
T ss_dssp             EEEECTTSCEEEEESSTTCEEEEEE-------------------------------------------------------
T ss_pred             eEEeccCCCcccCCCcCCceEEEEe-------------------------------------------------------
Confidence            97764   3 567764 99999998                                                       


Q ss_pred             hHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEE
Q psy4730         858 DELIEQIKINLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYI  937 (1513)
Q Consensus       858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~  937 (1513)
                                                        ||+|||..|+||+|||+|+|||++|||||||+++.+|+.++|++|+
T Consensus      1381 ----------------------------------DDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~v 1426 (3245)
T 3vkg_A         1381 ----------------------------------DEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFV 1426 (3245)
T ss_dssp             ----------------------------------TTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEE
T ss_pred             ----------------------------------cccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEE
Confidence                                              9999999999999999999999999999999999999999999999


Q ss_pred             EeecCC----CCCCChhhhccceEeecCCCChHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhhccCCC
Q psy4730         938 TAMIPT----MNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPI 1013 (1513)
Q Consensus       938 ~a~~~~----~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1013 (1513)
                      ||||||    |++|+|||+|||+++++++|+.+++.+||++++.+++.  |.++++.++..++++++++|..+.+.|+|+
T Consensus      1427 aamnPp~~gGr~~l~~Rf~r~F~vi~i~~ps~esL~~If~til~~~l~--~~p~l~~~~~~lv~ati~ly~~v~~~~lp~ 1504 (3245)
T 3vkg_A         1427 GACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQIYGTFNRALMK--LLPNLRSFADNLTDAMVEFYSESQKRFTPD 1504 (3245)
T ss_dssp             EEECCTTSTTCCCCCHHHHTTCCEEECCCCCHHHHHHHHHHHHHHHTT--SCGGGTTSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             EEcCCCCCCCCccCCHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999997    79999999999999999999999999999999988653  566788899999999999999999999995


Q ss_pred             CCCCccccchhhHHHHHhhhccc-CCcccCChhhHHHhhhhhHHHHHhhhcCChhhHHHHHHHHHHHHHhhhhhhHHHHh
Q psy4730        1014 PSKSHYVFNLRDFAKVIMGLTQL-PASHCKAPDKMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGTKMDEFL 1092 (1513)
Q Consensus      1014 ~~~~hy~fnlrd~~~~~~g~~~~-~~~~~~~~~~~~rl~~hE~~rvf~drl~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 1092 (1513)
                       .|+||+|||||++||+||++++ .+..+.++..++|||.||+.|||+|||++++||+||..+++++++++|+...    
T Consensus      1505 -~k~HY~FnLRDLsrv~qGll~~~~~~~~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~l~~~~~~~F~~~~---- 1579 (3245)
T 3vkg_A         1505 -IQAHYIYSPRELSRWDRALLEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHFPSVN---- 1579 (3245)
T ss_dssp             -TSTTCCCCHHHHHHHHHHHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHCTTSC----
T ss_pred             -cCCCccccHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCcch----
Confidence             9999999999999999999987 4455678999999999999999999999999999999999999999886411    


Q ss_pred             hccccCcccchhhcccceeccccccccccCCc-------cccccccchhh----HhHHHHHHHHHHHHHHHHHhhccccc
Q psy4730        1093 KNKITDKTISADDLRSLFFGNFLGNTIIFPGA-------WACFDEFNRIE----LEVLSVVAQQVQSIQLATIAKLKKFM 1161 (1513)
Q Consensus      1093 ~~~~~~~~~~~~~~~~l~f~~fv~~~~~~~G~-------W~~~de~n~l~----~~vLs~v~~~i~~i~~~l~~~~~~~~ 1161 (1513)
                               .....++++||+|++..+.....       =..+++||+..    ..+..-+.+||.+|.|++++++++.+
T Consensus      1580 ---------~~~~~~pllf~~f~~~~Y~~v~~~~l~~~l~~~L~~yn~~~~~m~LVlF~daleHv~RI~RIL~qp~GhaL 1650 (3245)
T 3vkg_A         1580 ---------LDALKRPILYSNWLTKDYQPVNRSDLREYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQPQGHAL 1650 (3245)
T ss_dssp             ---------GGGGCSSCCCCSSCC----CCCHHHHHHHHHHHHHTTC------CCCCCHHHHHHHHHHHHHHTSTTCCEE
T ss_pred             ---------hhhcccCcchhhhccccCccCCHHHHHHHHHHHHHHHHhcccCceEEeHHHHHHHHHHHHHHHccCCCCeE
Confidence                     11123688999999743221110       01345555432    12224478999999999999999887


Q ss_pred             ccc
Q psy4730        1162 FEG 1164 (1513)
Q Consensus      1162 ~~g 1164 (1513)
                      +-|
T Consensus      1651 LVG 1653 (3245)
T 3vkg_A         1651 LIG 1653 (3245)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            766

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=100.00  E-value=6.2e-51  Score=574.87  Aligned_cols=290  Identities=23%  Similarity=0.377  Sum_probs=268.7

Q ss_pred             CCCccccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeeccccccChhHHHHHHHHHh
Q psy4730         703 LRPSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKL  782 (1513)
Q Consensus       703 ~~~~~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t~~~~~q~~i~~~~  782 (1513)
                      ..+.+++|||.||+|+.++++.++..++|+||+||||||||+++++++++..  .+....++||+.|++..+|..+++.+
T Consensus      1241 ~~~~~iiVpT~DT~R~~~ll~~~l~~~~~vLL~GPpGtGKT~la~~~l~~~~--~~~~~~infsa~ts~~~~~~~i~~~~ 1318 (2695)
T 4akg_A         1241 VMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSS--LYDVVGINFSKDTTTEHILSALHRHT 1318 (2695)
T ss_dssp             GSCSSCCCCCHHHHHHHHHHHHHHHHTCEEEEECSTTSSHHHHHHHHHHSCS--SCEEEEEECCTTCCHHHHHHHHHHHB
T ss_pred             cCccceeEeccchHHHHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHhcCC--CCceEEEEeecCCCHHHHHHHHHHHh
Confidence            4577899999999999999999999999999999999999999999988763  35667899999999999999999998


Q ss_pred             hhhc---cCCCCCC-CCceEEEEecccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCcCCCCCChh
Q psy4730         783 DRRR---KGVYGPA-MGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRD  858 (1513)
Q Consensus       783 ~~~~---~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  858 (1513)
                      ++++   +..|||+ .|+++|+|+                                                        
T Consensus      1319 ~~~~~~~g~~~~P~~~gk~~VlFi-------------------------------------------------------- 1342 (2695)
T 4akg_A         1319 NYVTTSKGLTLLPKSDIKNLVLFC-------------------------------------------------------- 1342 (2695)
T ss_dssp             CCEEETTTEEEEEBSSSSCEEEEE--------------------------------------------------------
T ss_pred             hhccccCCccccCCCCCceEEEEe--------------------------------------------------------
Confidence            7653   4467885 789999998                                                        


Q ss_pred             HHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEE
Q psy4730         859 ELIEQIKINLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYIT  938 (1513)
Q Consensus       859 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~  938 (1513)
                                                       ||+|||..|+||+|+++|+|||++|+|||||+.+..++.++|++++|
T Consensus      1343 ---------------------------------DEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIa 1389 (2695)
T 4akg_A         1343 ---------------------------------DEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVG 1389 (2695)
T ss_dssp             ---------------------------------ETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEE
T ss_pred             ---------------------------------cccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEE
Confidence                                             99999999999999999999999999999999989999999999999


Q ss_pred             eecCC----CCCCChhhhccceEeecCCCChHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q psy4730         939 AMIPT----MNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIP 1014 (1513)
Q Consensus       939 a~~~~----~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1014 (1513)
                      |||||    |+.|+|||+|||+++++++|+.+++.+||++++.+++.  |.++++.++++|+++|+++|+++.+.|+| |
T Consensus      1390 A~Npp~~gGR~~l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~~l~--~~~~v~~~~~~lv~ati~~y~~v~~~~~~-~ 1466 (2695)
T 4akg_A         1390 ACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKAIFK--LVPEFRSYTEPFARASVHLYNECKARYST-G 1466 (2695)
T ss_dssp             EECCTTSTTCCCCCHHHHTTEEEEECCCCTTTHHHHHHHHHHHHHTT--SSGGGGGGHHHHHHHHHHHHHHHHHHSCT-T
T ss_pred             ecCCCccCCCccCChhhhheeeEEEeCCCCHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHHHHHHHcCC-c
Confidence            99997    68999999999999999999999999999999999873  67789999999999999999999999987 5


Q ss_pred             CCCccccchhhHHHHHhhhcccCCc-ccCChhhHHHhhhhhHHHHHhhhcCChhhHHHHHHHHHHHHHhhhhh
Q psy4730        1015 SKSHYVFNLRDFAKVIMGLTQLPAS-HCKAPDKMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGT 1086 (1513)
Q Consensus      1015 ~~~hy~fnlrd~~~~~~g~~~~~~~-~~~~~~~~~rl~~hE~~rvf~drl~~~~d~~~~~~~~~~~~~~~~~~ 1086 (1513)
                      .|+||+|||||++||+||++.+.++ .+.++..++|||.||+.|||+|||++++||+||.+++.++++++|+.
T Consensus      1467 ~k~HY~FnlRDLsrv~qGll~~~~~~~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~~f~~ 1539 (2695)
T 4akg_A         1467 LQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYLPN 1539 (2695)
T ss_dssp             TCTTCCCCHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHHHSCC
T ss_pred             cCCCcccCHHHHHHHHHHHHhcCchhhhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999998654 47889999999999999999999999999999999999999988853

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.36  E-value=1.8e-11  Score=161.33  Aligned_cols=127  Identities=17%  Similarity=0.255  Sum_probs=92.7

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCC----ChhhccccccCCCCCCc----cCHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI----TMGQLYGEFDSASHEWR----DGILAK 1424 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~----t~~eL~G~~~~~t~eW~----DG~l~~ 1424 (1513)
                      +++|+||||+|||++.+.+++.++              ..+.++|...+    +..+|+|.-    .++.    .|.++.
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l~--------------~~~~~i~~s~~~~~~~~~~l~g~~----~g~~g~~~~~~l~~  551 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKALG--------------IELLRFDMSEYMERHTVSRLIGAP----PGYVGFDQGGLLTD  551 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT--------------CEEEEEEGGGCSSSSCCSSSCCCC----SCSHHHHHTTHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhc--------------CCEEEEechhhcchhhHhhhcCCC----CCCcCccccchHHH
Confidence            699999999999999999998874              23455654433    467888852    1222    367778


Q ss_pred             HHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCC--------------
Q psy4730        1425 TFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE-------------- 1488 (1513)
Q Consensus      1425 ~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~-------------- 1488 (1513)
                      .+|+.      ....++||  .-+++...+.|..+||+. .++-..|..+.+ .++.+|+-+..-.              
T Consensus       552 ~~~~~------~~~vl~lDEi~~~~~~~~~~Ll~~le~~-~~~~~~g~~~~~-~~~~iI~tsN~~~~~~~~~~~g~~~~~  623 (758)
T 1r6b_X          552 AVIKH------PHAVLLLDEIEKAHPDVFNILLQVMDNG-TLTDNNGRKADF-RNVVLVMTTNAGVRETERKSIGLIHQD  623 (758)
T ss_dssp             HHHHC------SSEEEEEETGGGSCHHHHHHHHHHHHHS-EEEETTTEEEEC-TTEEEEEEECSSCC-------------
T ss_pred             HHHhC------CCcEEEEeCccccCHHHHHHHHHHhcCc-EEEcCCCCEEec-CCeEEEEecCcchhhhhhcccCccccc
Confidence            88764      24899999  567888999999999864 566677877776 5677777654321              


Q ss_pred             -----------CCCcchhhcc-EEEEeeC
Q psy4730        1489 -----------FASPATVSRV-GMIYFEL 1505 (1513)
Q Consensus      1489 -----------~asPatvsRc-g~v~~~~ 1505 (1513)
                                 ...|+..+|| .+|.|.|
T Consensus       624 ~~~~~~~~~~~~~~~~l~~R~~~~i~~~~  652 (758)
T 1r6b_X          624 NSTDAMEEIKKIFTPEFRNRLDNIIWFDH  652 (758)
T ss_dssp             ----CHHHHHHHSCHHHHTTCSEEEECCC
T ss_pred             hHHHHHHHHHHhcCHHHHhhCCcceeeCC
Confidence                       5689999999 6677765

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.35  E-value=1.2e-10  Score=155.00  Aligned_cols=134  Identities=20%  Similarity=0.301  Sum_probs=87.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCCCCCCcc-CHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSASHEWRD-GILAKTF 1426 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~t~eW~D-G~l~~~l 1426 (1513)
                      .+++|+||||+|||++.+.|+..+..-           ...+..+|+..+.    ..+|+|.- |.-.++.. |.|+.++
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~-----------~~~~i~i~~~~~~~~~~~s~l~g~~-~~~~G~~~~g~l~~~~  656 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDT-----------EEAMIRIDMTEYMEKHAVSRLIGAP-PGYVGYEEGGQLTEAV  656 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSS-----------GGGEEEECTTTCCSSGGGGGC---------------CHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCC-----------CCcEEEEechhccchhHHHHHcCCC-CCCcCccccchHHHHH
Confidence            589999999999999999999887531           1245667766554    56788752 11223444 8888888


Q ss_pred             HHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecC------------------
Q psy4730        1427 REMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN------------------ 1486 (1513)
Q Consensus      1427 R~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~------------------ 1486 (1513)
                      ++..      ...++||  +.+++.....|..+||+.+ ++-..|..+.+ .++.+|+-+.-                  
T Consensus       657 ~~~~------~~vl~lDEi~~l~~~~~~~Ll~~l~~~~-~~~~~g~~vd~-~~~iiI~tsn~~~~~~~~~~~~~~~~~~l  728 (854)
T 1qvr_A          657 RRRP------YSVILFDEIEKAHPDVFNILLQILDDGR-LTDSHGRTVDF-RNTVIILTSNLGSPLILEGLQKGWPYERI  728 (854)
T ss_dssp             HHCS------SEEEEESSGGGSCHHHHHHHHHHHTTTE-ECCSSSCCEEC-TTEEEEEECCTTHHHHHHHHHTTCCHHHH
T ss_pred             HhCC------CeEEEEecccccCHHHHHHHHHHhccCc-eECCCCCEecc-CCeEEEEecCcChHHHhhhcccccchHHH
Confidence            8642      3689999  6788999999999998764 55555666665 34446664431                  


Q ss_pred             --------CCCCCcchhhcc-EEEEeeC
Q psy4730        1487 --------LEFASPATVSRV-GMIYFEL 1505 (1513)
Q Consensus      1487 --------l~~asPatvsRc-g~v~~~~ 1505 (1513)
                              -....|+..+|| .+|.+.|
T Consensus       729 ~~~v~~~~~~~f~~~l~~Rl~~~i~~~p  756 (854)
T 1qvr_A          729 RDEVFKVLQQHFRPEFLNRLDEIVVFRP  756 (854)
T ss_dssp             HHHHHHHHHTTSCHHHHHTCSBCCBCCC
T ss_pred             HHHHHHHHHhhCCHHHHHhcCeEEeCCC
Confidence                    134679999999 5555654

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.33  E-value=1.3e-10  Score=152.78  Aligned_cols=124  Identities=19%  Similarity=0.242  Sum_probs=82.5

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhcc
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVS 1432 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~~ 1432 (1513)
                      +++|+||||+|||++.+.++..+..-           ...+.++|...+     .+.+..     ..|.++.++|+..  
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~-----------~~~~i~i~~s~~-----~~~~~~-----~~~~l~~~~~~~~--  579 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGD-----------EESMIRIDMSEY-----MEKHST-----SGGQLTEKVRRKP--  579 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSC-----------TTCEEEEEGGGG-----CSSCCC-----C---CHHHHHHCS--
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCC-----------CcceEEEechhc-----cccccc-----ccchhhHHHHhCC--
Confidence            59999999999999999999987421           123556664433     232221     1677888887652  


Q ss_pred             CCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCC------------CCCcchhhcc
Q psy4730        1433 TTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE------------FASPATVSRV 1498 (1513)
Q Consensus      1433 ~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~------------~asPatvsRc 1498 (1513)
                          ...++||  +.+++.....|..+||+. .++...|..+. +.++++|+-+..-.            ...|+..+||
T Consensus       580 ----~~vl~lDEi~~~~~~~~~~Ll~~le~g-~~~~~~g~~~~-~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl  653 (758)
T 3pxi_A          580 ----YSVVLLDAIEKAHPDVFNILLQVLEDG-RLTDSKGRTVD-FRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRI  653 (758)
T ss_dssp             ----SSEEEEECGGGSCHHHHHHHHHHHHHS-BCC-----CCB-CTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTS
T ss_pred             ----CeEEEEeCccccCHHHHHHHHHHhccC-eEEcCCCCEec-cCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhC
Confidence                3699999  678899999999999874 56666676654 56778888665321            2679999999


Q ss_pred             -EEEEeeC
Q psy4730        1499 -GMIYFEL 1505 (1513)
Q Consensus      1499 -g~v~~~~ 1505 (1513)
                       .+|+|.|
T Consensus       654 ~~~i~~~~  661 (758)
T 3pxi_A          654 DEIIVFHS  661 (758)
T ss_dssp             SEEEECC-
T ss_pred             CeEEecCC
Confidence             6777765

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=98.49  E-value=9.4e-07  Score=100.84  Aligned_cols=118  Identities=15%  Similarity=0.181  Sum_probs=72.9

Q ss_pred             HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC------CCCCChhhhccceE--eec
Q psy4730         889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------MNTITGRLLRHMNI--ISI  960 (1513)
Q Consensus       889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------~~~~~~r~~~~f~~--~~~  960 (1513)
                      +|+||++....      ...+.|.++++.+.++..+.. ...-.++.+|+|+|++      ...+.++|++||..  +.+
T Consensus       104 l~lDEi~~l~~------~~q~~Ll~~l~~~~~~~~g~~-~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~l  176 (265)
T 2bjv_A          104 LFLDELATAPM------MVQEKLLRVIEYGELERVGGS-QPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQL  176 (265)
T ss_dssp             EEEESGGGSCH------HHHHHHHHHHHHCEECCCCC---CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEEC
T ss_pred             EEEechHhcCH------HHHHHHHHHHHhCCeecCCCc-ccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeC
Confidence            34588884432      256777888888877644432 3334588999999996      34688999999975  455


Q ss_pred             CCCCh--HHHHHHHHHHhhhhhhc-------cchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccccchhhHHHHHh
Q psy4730         961 DSFNE--ATLSKIFTSVLDWHFSK-------GFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIM 1031 (1513)
Q Consensus       961 ~~~~~--~~l~~i~~~~l~~~~~~-------~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hy~fnlrd~~~~~~ 1031 (1513)
                      ++...  +++..+...++......       .++++....           .           ...+|-.|+|.+.++++
T Consensus       177 p~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~-----------L-----------~~~~~~gn~reL~~~l~  234 (265)
T 2bjv_A          177 PPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARET-----------L-----------LNYRWPGNIRELKNVVE  234 (265)
T ss_dssp             CCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHH-----------H-----------HHSCCTTHHHHHHHHHH
T ss_pred             CChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHH-----------H-----------HhCCCCCCHHHHHHHHH
Confidence            55554  46666666655432111       122221111           1           02367789999999988


Q ss_pred             hhcc
Q psy4730        1032 GLTQ 1035 (1513)
Q Consensus      1032 g~~~ 1035 (1513)
                      ....
T Consensus       235 ~~~~  238 (265)
T 2bjv_A          235 RSVY  238 (265)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=98.19  E-value=3.3e-06  Score=98.51  Aligned_cols=84  Identities=14%  Similarity=0.292  Sum_probs=63.5

Q ss_pred             HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC-------------------------
Q psy4730         889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT-------------------------  943 (1513)
Q Consensus       889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~-------------------------  943 (1513)
                      +|+||++....      .....|.++++.+.+.+.. ...+.+.++.+|+|+|++                         
T Consensus       123 l~lDEi~~l~~------~~~~~Ll~~le~~~~~~~~-~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~  195 (311)
T 4fcw_A          123 ILFDAIEKAHP------DVFNILLQMLDDGRLTDSH-GRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVL  195 (311)
T ss_dssp             EEEETGGGSCH------HHHHHHHHHHHHSEEECTT-SCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHH
T ss_pred             EEEeChhhcCH------HHHHHHHHHHhcCEEEcCC-CCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHH
Confidence            34588874432      3677888888888777543 345566678899999983                         


Q ss_pred             CCCCChhhhccc-eEeecCCCChHHHHHHHHHHhhhh
Q psy4730         944 MNTITGRLLRHM-NIISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       944 ~~~~~~r~~~~f-~~~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      ...++|.|++|| .++.+.+|+.+++..|...++...
T Consensus       196 ~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~  232 (311)
T 4fcw_A          196 QQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYL  232 (311)
T ss_dssp             HHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHH
T ss_pred             HHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence            346889999999 678899999999999999877653

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=98.13  E-value=3e-05  Score=90.32  Aligned_cols=130  Identities=15%  Similarity=0.199  Sum_probs=74.4

Q ss_pred             HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC------CCCCChhhhccceEeecCC
Q psy4730         889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------MNTITGRLLRHMNIISIDS  962 (1513)
Q Consensus       889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------~~~~~~r~~~~f~~~~~~~  962 (1513)
                      +|+||+..-..+      ....|-.+++.+.+...+. ....-.|+.+|+|+|++      ...+.+.|+.||+.+.+.-
T Consensus       100 L~LDEi~~l~~~------~q~~Ll~~l~~~~~~~~g~-~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~l  172 (304)
T 1ojl_A          100 LFLDEIGDISPL------MQVRLLRAIQEREVQRVGS-NQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEM  172 (304)
T ss_dssp             EEEESCTTCCHH------HHHHHHHHHHSSBCCBTTB-CCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEEC
T ss_pred             EEEeccccCCHH------HHHHHHHHHhcCEeeecCC-cccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEec
Confidence            456998833222      3444555666665543332 22233589999999987      2457889999997766444


Q ss_pred             CC----hHHHHHHHHHHhhhhhh------ccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccccchhhHHHHHhh
Q psy4730         963 FN----EATLSKIFTSVLDWHFS------KGFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIMG 1032 (1513)
Q Consensus       963 ~~----~~~l~~i~~~~l~~~~~------~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hy~fnlrd~~~~~~g 1032 (1513)
                      |+    .+++..+...++..+-.      ..|.++......                      ..+|--|+|.+.++++.
T Consensus       173 PpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~----------------------~~~wpGnvReL~~~l~~  230 (304)
T 1ojl_A          173 PSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLI----------------------HYDWPGNIRELENAIER  230 (304)
T ss_dssp             CCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHH----------------------HCCCSSHHHHHHHHHHH
T ss_pred             cCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHH----------------------cCCCCCCHHHHHHHHHH
Confidence            44    45777777776654311      123332221110                      12456699999999877


Q ss_pred             hcccCCcccCChhhH
Q psy4730        1033 LTQLPASHCKAPDKM 1047 (1513)
Q Consensus      1033 ~~~~~~~~~~~~~~~ 1047 (1513)
                      ..........+...+
T Consensus       231 ~~~~~~~~~i~~~~l  245 (304)
T 1ojl_A          231 AVVLLTGEYISEREL  245 (304)
T ss_dssp             HHHHCCSSSBCGGGS
T ss_pred             HHHhCCCCcccHHhh
Confidence            654433333344333

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.06  E-value=5e-06  Score=88.85  Aligned_cols=69  Identities=16%  Similarity=0.189  Sum_probs=48.4

Q ss_pred             HhhccC-CC-CCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCC----CCCChhhhccceEeecCCC
Q psy4730         890 ILDDLN-MP-QKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTM----NTITGRLLRHMNIISIDSF  963 (1513)
Q Consensus       890 ~~dd~n-~p-~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~----~~~~~r~~~~f~~~~~~~~  963 (1513)
                      ++||++ ++ ..+..+.....++|+.+++.+              ++.++++++++.    ..+++++.+||..+.+++|
T Consensus       120 ~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p  185 (195)
T 1jbk_A          120 FIDELHTMVGAGKADGAMDAGNMLKPALARG--------------ELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEP  185 (195)
T ss_dssp             EEETGGGGTT------CCCCHHHHHHHHHTT--------------SCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCC
T ss_pred             EEeCHHHHhccCcccchHHHHHHHHHhhccC--------------CeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCC
Confidence            348887 32 222344567788999888753              456788888762    4789999999999999999


Q ss_pred             ChHHHHHHH
Q psy4730         964 NEATLSKIF  972 (1513)
Q Consensus       964 ~~~~l~~i~  972 (1513)
                      +.++...|+
T Consensus       186 ~~~~~~~il  194 (195)
T 1jbk_A          186 SVEDTIAIL  194 (195)
T ss_dssp             CHHHHHTTC
T ss_pred             CHHHHHHHh
Confidence            999876653

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=98.02  E-value=9.9e-06  Score=106.48  Aligned_cols=81  Identities=20%  Similarity=0.318  Sum_probs=59.7

Q ss_pred             hhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCC-----------CCCChhhhccc-eEe
Q psy4730         891 LDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTM-----------NTITGRLLRHM-NII  958 (1513)
Q Consensus       891 ~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~-----------~~~~~r~~~~f-~~~  958 (1513)
                      +||+.....      .+...|.++++.|.+.+.+. ..+...|+.+|+|+|.+-           ..+.|.|++|| .++
T Consensus       585 lDEi~~~~~------~~~~~Ll~~le~g~~~~~~g-~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i  657 (758)
T 3pxi_A          585 LDAIEKAHP------DVFNILLQVLEDGRLTDSKG-RTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEII  657 (758)
T ss_dssp             EECGGGSCH------HHHHHHHHHHHHSBCC------CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEE
T ss_pred             EeCccccCH------HHHHHHHHHhccCeEEcCCC-CEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEE
Confidence            488874432      47888999999988887653 335557999999999652           23899999999 789


Q ss_pred             ecCCCChHHHHHHHHHHhhh
Q psy4730         959 SIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       959 ~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+++|+.+++..|....+..
T Consensus       658 ~~~~l~~~~~~~i~~~~l~~  677 (758)
T 3pxi_A          658 VFHSLEKKHLTEIVSLMSDQ  677 (758)
T ss_dssp             ECC--CHHHHHHHHHHHHHH
T ss_pred             ecCCCCHHHHHHHHHHHHHH
Confidence            99999999999999987765

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=98.00  E-value=5.8e-06  Score=97.49  Aligned_cols=80  Identities=10%  Similarity=0.108  Sum_probs=57.6

Q ss_pred             hhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC----CCCCChhhhccceE-eecCCCCh
Q psy4730         891 LDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT----MNTITGRLLRHMNI-ISIDSFNE  965 (1513)
Q Consensus       891 ~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~----~~~~~~r~~~~f~~-~~~~~~~~  965 (1513)
                      +||+|....      .....|.+.++.+.+...+ .....-.++.+++++||.    +..+++++++||.+ +.+++|+.
T Consensus       115 iDEi~~~~~------~~~~~Ll~~l~~~~~~~~g-~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~  187 (331)
T 2r44_A          115 ADEVNRSPA------KVQSALLECMQEKQVTIGD-TTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDK  187 (331)
T ss_dssp             EETGGGSCH------HHHHHHHHHHHHSEEEETT-EEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCH
T ss_pred             EEccccCCH------HHHHHHHHHHhcCceeeCC-EEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCH
Confidence            388885432      3567777888876554322 222223378889999986    24599999999996 99999999


Q ss_pred             HHHHHHHHHHhh
Q psy4730         966 ATLSKIFTSVLD  977 (1513)
Q Consensus       966 ~~l~~i~~~~l~  977 (1513)
                      ++...|....+.
T Consensus       188 ~~~~~il~~~~~  199 (331)
T 2r44_A          188 ESELEVMRRVSN  199 (331)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHhccc
Confidence            999999887654

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=97.99  E-value=6.5e-06  Score=97.67  Aligned_cols=146  Identities=20%  Similarity=0.285  Sum_probs=95.1

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhccccccc-------------------ceeEEEecCCCCChhhccccc
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEF-------------------KTGYKIINPKSITMGQLYGEF 1410 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~-------------------~~~~~~inp~~~t~~eL~G~~ 1410 (1513)
                      ...+|+|+||||+|||++.+.+++.+............+.                   ...+. --|...+..+++|..
T Consensus        44 ~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~  122 (350)
T 1g8p_A           44 GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVV-DLPLGVSEDRVVGAL  122 (350)
T ss_dssp             GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEE-EECTTCCHHHHHCEE
T ss_pred             CCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCccc-ccCCCcchhhheeec
Confidence            4568999999999999999999987753100000000000                   00111 224555677888874


Q ss_pred             cCC------CCCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEE
Q psy4730        1411 DSA------SHEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIF 1482 (1513)
Q Consensus      1411 ~~~------t~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iF 1482 (1513)
                      +..      ...+..|.+..+          ....+++|  +.+++.-.+.|..+|++.....-..|.....|.++.++.
T Consensus       123 ~~~~~~~~~~~~~~~g~~~~a----------~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~  192 (350)
T 1g8p_A          123 DIERAISKGEKAFEPGLLARA----------NRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVG  192 (350)
T ss_dssp             CHHHHHHHCGGGEECCHHHHH----------TTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEE
T ss_pred             hhhhhhcCCceeecCceeeec----------CCCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEE
Confidence            321      134566665433          23799999  567787788888888776544555688888888888888


Q ss_pred             eecCCC-CCCcchhhccEE-EEeeCC
Q psy4730        1483 ECENLE-FASPATVSRVGM-IYFELK 1506 (1513)
Q Consensus      1483 E~~~l~-~asPatvsRcg~-v~~~~~ 1506 (1513)
                      -+.... ...|+..+||++ +.+.+-
T Consensus       193 ~~n~~~~~l~~~L~~R~~~~~~l~~~  218 (350)
T 1g8p_A          193 SGNPEEGDLRPQLLDRFGLSVEVLSP  218 (350)
T ss_dssp             EECSCSCCCCHHHHTTCSEEEECCCC
T ss_pred             EeCCCCCCCCHHHHhhcceEEEcCCC
Confidence            765433 688999999998 777653

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.99  E-value=3.2e-05  Score=90.80  Aligned_cols=46  Identities=15%  Similarity=0.077  Sum_probs=40.0

Q ss_pred             cceEEEEeecCCCCCCChhhhccc-eEeecCCCChHHHHHHHHHHhhh
Q psy4730         932 VDIIYITAMIPTMNTITGRLLRHM-NIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       932 ~~~~~~~a~~~~~~~~~~r~~~~f-~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .++.+++|+|.+ ..+++.++||| ..++++.|+.+....|+..++..
T Consensus       148 ~~v~vI~atn~~-~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~  194 (322)
T 1xwi_A          148 DGILVLGATNIP-WVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGT  194 (322)
T ss_dssp             TTEEEEEEESCT-TTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred             CCEEEEEecCCc-ccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhc
Confidence            468899999988 46899999999 67999999999999999887654

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.92  E-value=7.5e-06  Score=103.01  Aligned_cols=85  Identities=22%  Similarity=0.326  Sum_probs=54.1

Q ss_pred             hhccCCCCCccCCCCChHHHHHHHHhcC---CccccCCceeeeecceEEEEeecCCCCCCChhhhccceEeecCCCChHH
Q psy4730         891 LDDLNMPQKETYGAQPAVELLRQIIDHK---HLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEAT  967 (1513)
Q Consensus       891 ~dd~n~p~~~~~~~q~~le~lr~~~~~~---~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~  967 (1513)
                      +|++..-..+..|.  +.+.|.++++.+   .|.+......+...++.+|+|+|++. .++|.|++||.++.++.|+.+.
T Consensus       181 lDEid~l~~~~~~~--~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~-~l~~aL~~R~~vi~~~~~~~~e  257 (543)
T 3m6a_A          181 LDEIDKMSSDFRGD--PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLA-TIPGPLRDRMEIINIAGYTEIE  257 (543)
T ss_dssp             EEESSSCC-----------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTT-TSCHHHHHHEEEEECCCCCHHH
T ss_pred             EhhhhhhhhhhccC--HHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccc-cCCHHHHhhcceeeeCCCCHHH
Confidence            48877443332221  223334444432   23333333344557889999999864 6889999999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy4730         968 LSKIFTSVLDW  978 (1513)
Q Consensus       968 l~~i~~~~l~~  978 (1513)
                      ...|+..++..
T Consensus       258 ~~~Il~~~l~~  268 (543)
T 3m6a_A          258 KLEIVKDHLLP  268 (543)
T ss_dssp             HHHHHHHTHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999887643

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.89  E-value=1.6e-05  Score=104.58  Aligned_cols=80  Identities=15%  Similarity=0.313  Sum_probs=65.2

Q ss_pred             hccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCC------------------------CCC
Q psy4730         892 DDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTM------------------------NTI  947 (1513)
Q Consensus       892 dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~------------------------~~~  947 (1513)
                      ||+.....+      +++.|.++++.|.+.|.. ...+...++.+|+|+|++.                        ..+
T Consensus       564 DEi~~~~~~------~~~~Ll~~le~~~~~~~~-g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  636 (758)
T 1r6b_X          564 DEIEKAHPD------VFNILLQVMDNGTLTDNN-GRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIF  636 (758)
T ss_dssp             ETGGGSCHH------HHHHHHHHHHHSEEEETT-TEEEECTTEEEEEEECSSCC-----------------CHHHHHHHS
T ss_pred             eCccccCHH------HHHHHHHHhcCcEEEcCC-CCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhc
Confidence            888755433      789999999999888865 3455568999999999851                        168


Q ss_pred             Chhhhccc-eEeecCCCChHHHHHHHHHHhhh
Q psy4730         948 TGRLLRHM-NIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       948 ~~r~~~~f-~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      +|.|++|| .++.+++|+.+++..|....+..
T Consensus       637 ~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~  668 (758)
T 1r6b_X          637 TPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVE  668 (758)
T ss_dssp             CHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             CHHHHhhCCcceeeCCCCHHHHHHHHHHHHHH
Confidence            89999999 77999999999999999987754

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.89  E-value=1.4e-05  Score=91.95  Aligned_cols=45  Identities=20%  Similarity=0.228  Sum_probs=38.6

Q ss_pred             ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ++.+|+|+|++ ..+++.++|  ||. .+.++.|+.++...|+...+..
T Consensus       156 ~~~vI~ttn~~-~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~  203 (285)
T 3h4m_A          156 DVKIIGATNRP-DILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRK  203 (285)
T ss_dssp             SEEEEEECSCG-GGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTT
T ss_pred             CEEEEEeCCCc-hhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhc
Confidence            67889999887 458999998  996 6999999999999999887654

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.88  E-value=9.3e-06  Score=100.40  Aligned_cols=47  Identities=17%  Similarity=0.112  Sum_probs=41.4

Q ss_pred             ceEEEEeecCCC----CCCChhhhccceEeecCCCChHHHHHHHHHHhhhh
Q psy4730         933 DIIYITAMIPTM----NTITGRLLRHMNIISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       933 ~~~~~~a~~~~~----~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      ++.+|+|++++.    ..+++.|.|||..+.+++|+.+++..|+..++..+
T Consensus       291 ~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~  341 (468)
T 3pxg_A          291 ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRY  341 (468)
T ss_dssp             SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTS
T ss_pred             CEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHH
Confidence            578999999983    37899999999999999999999999999877653

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.87  E-value=5.3e-05  Score=88.15  Aligned_cols=117  Identities=15%  Similarity=0.153  Sum_probs=72.9

Q ss_pred             HhhccC-CCCC--ccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCC----CCCChhhhccc-eEeecC
Q psy4730         890 ILDDLN-MPQK--ETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTM----NTITGRLLRHM-NIISID  961 (1513)
Q Consensus       890 ~~dd~n-~p~~--~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~----~~~~~r~~~~f-~~~~~~  961 (1513)
                      ++||+. +...  +.-..+..+..|.++++.+.            .++.+|+++++++    ..++|.|.+|| ..+.++
T Consensus       135 ~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~------------~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~  202 (309)
T 3syl_A          135 FIDEAYYLYRPDNERDYGQEAIEILLQVMENNR------------DDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFP  202 (309)
T ss_dssp             EEETGGGSCCCC---CCTHHHHHHHHHHHHHCT------------TTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEEC
T ss_pred             EEEChhhhccCCCcccccHHHHHHHHHHHhcCC------------CCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcC
Confidence            347776 2211  11234456677777777532            4678888888762    24579999999 889999


Q ss_pred             CCChHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccccchhhHHHHHhhhc
Q psy4730         962 SFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIMGLT 1034 (1513)
Q Consensus       962 ~~~~~~l~~i~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hy~fnlrd~~~~~~g~~ 1034 (1513)
                      +|+.+++..|+..++...- ..+.++........+       ...        ...++.-|.|++.++++-..
T Consensus       203 ~~~~~~~~~il~~~l~~~~-~~~~~~~~~~l~~~~-------~~~--------~~~~~~gn~r~l~~~l~~a~  259 (309)
T 3syl_A          203 DYSDEELFEIAGHMLDDQN-YQMTPEAETALRAYI-------GLR--------RNQPHFANARSIRNALDRAR  259 (309)
T ss_dssp             CCCHHHHHHHHHHHHHHTT-CEECHHHHHHHHHHH-------HHH--------TTSSSCCHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH-------HHh--------ccCCCCCcHHHHHHHHHHHH
Confidence            9999999999999887532 235554332221111       111        12345557898888877543

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.86  E-value=5.6e-05  Score=87.96  Aligned_cols=134  Identities=20%  Similarity=0.290  Sum_probs=91.7

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCCCCCCcc-CHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSASHEWRD-GILAKTF 1426 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~t~eW~D-G~l~~~l 1426 (1513)
                      ++++|+||||||||++.+.+++.+..-.           ..+..+++..++    ..+++|... ...++.. |.+..++
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~  115 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTE-----------EAMIRIDMTEYMEKHAVSRLIGAPP-GYVGYEEGGQLTEAV  115 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCG-----------GGEEEEEGGGCCSTTHHHHHHCCCT-TSTTTTTCCHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCC-----------cceEEeecccccccccHHHhcCCCC-ccccccccchHHHHH
Confidence            6899999999999999999998875311           224555555444    567888543 2234544 7888888


Q ss_pred             HHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecC------------------
Q psy4730        1427 REMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN------------------ 1486 (1513)
Q Consensus      1427 R~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~------------------ 1486 (1513)
                      +...      ...+++|  ..+++.....|-.+|++. .+.-..|..+.++ ++.+|+-+..                  
T Consensus       116 ~~~~------~~vl~lDEi~~l~~~~~~~Ll~~le~~-~~~~~~~~~~~~~-~~iiI~ttn~~~~~i~~~~~~~~~~~~l  187 (311)
T 4fcw_A          116 RRRP------YSVILFDAIEKAHPDVFNILLQMLDDG-RLTDSHGRTVDFR-NTVIIMTSNLGSPLILEGLQKGWPYERI  187 (311)
T ss_dssp             HHCS------SEEEEEETGGGSCHHHHHHHHHHHHHS-EEECTTSCEEECT-TEEEEEEESTTHHHHHTTTTSCCCSSTH
T ss_pred             HhCC------CeEEEEeChhhcCHHHHHHHHHHHhcC-EEEcCCCCEEECC-CcEEEEecccCHHHHHhhhcccccHHHH
Confidence            7642      3699999  456777888888888765 3444556666655 4446666654                  


Q ss_pred             --------CCCCCcchhhcc-EEEEeeC
Q psy4730        1487 --------LEFASPATVSRV-GMIYFEL 1505 (1513)
Q Consensus      1487 --------l~~asPatvsRc-g~v~~~~ 1505 (1513)
                              .....|+..+|| .++.+.|
T Consensus       188 ~~~~~~~~~~~~~~~l~~R~~~~~~~~p  215 (311)
T 4fcw_A          188 RDEVFKVLQQHFRPEFLNRLDEIVVFRP  215 (311)
T ss_dssp             HHHTHHHHHHHSCHHHHTTCSEEEECCC
T ss_pred             HHHHHHHHHHhCCHHHHhcCCeEEEeCC
Confidence                    235789999999 4556655

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=97.85  E-value=2.4e-05  Score=99.39  Aligned_cols=84  Identities=14%  Similarity=0.187  Sum_probs=60.6

Q ss_pred             HHhhccCCCCCccCCCCChHHHHHHHHhcCCcc-ccCCceeeeecceEEEEeecCC--CC----------CCChhhhccc
Q psy4730         889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLY-DFQTVTRVDLVDIIYITAMIPT--MN----------TITGRLLRHM  955 (1513)
Q Consensus       889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~y-d~~~~~~~~~~~~~~~~a~~~~--~~----------~~~~r~~~~f  955 (1513)
                      +|+||++....+      ..+.|.+.++.|.+. ++.......-.++.++||+||+  +.          .+++.+++||
T Consensus       395 l~IDEid~l~~~------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RF  468 (595)
T 3f9v_A          395 AVIDEIDKMRDE------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRF  468 (595)
T ss_dssp             ECCTTTTCCCSH------HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGC
T ss_pred             EEeehhhhCCHh------HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhC
Confidence            567999955433      578888999988775 3223333334589999999997  33          8999999999


Q ss_pred             e--EeecCCCChHHHHHHHHHHhhhh
Q psy4730         956 N--IISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       956 ~--~~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      .  .+..++|+.+ ...|...++..+
T Consensus       469 Dl~~~~~~~~~~e-~~~i~~~il~~~  493 (595)
T 3f9v_A          469 DLIFILKDQPGEQ-DRELANYILDVH  493 (595)
T ss_dssp             SCCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred             eEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence            3  4667777777 777777777643

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.83  E-value=0.00013  Score=86.16  Aligned_cols=80  Identities=14%  Similarity=0.170  Sum_probs=53.3

Q ss_pred             hccCCCCCccCCCCChHHHHHHHHhcCCccccC------CceeeeecceEEEEeecCCCCCCChhhhccc-eEeecCCCC
Q psy4730         892 DDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQ------TVTRVDLVDIIYITAMIPTMNTITGRLLRHM-NIISIDSFN  964 (1513)
Q Consensus       892 dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~------~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f-~~~~~~~~~  964 (1513)
                      ||+..-.      ....+.|...++.+.+.-..      .........+.+++|+|+... +++.+++|| ..+.+++|+
T Consensus       113 DEi~~l~------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~-l~~~L~~R~~~~i~l~~~~  185 (338)
T 3pfi_A          113 DEIHRLS------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGM-LSNPLRDRFGMQFRLEFYK  185 (338)
T ss_dssp             ETGGGCC------HHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGG-SCHHHHTTCSEEEECCCCC
T ss_pred             echhhcC------HHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccc-cCHHHHhhcCEEeeCCCcC
Confidence            7776222      12566667777765442110      111122225899999998643 889999999 889999999


Q ss_pred             hHHHHHHHHHHhhh
Q psy4730         965 EATLSKIFTSVLDW  978 (1513)
Q Consensus       965 ~~~l~~i~~~~l~~  978 (1513)
                      .+++..|+...+..
T Consensus       186 ~~e~~~il~~~~~~  199 (338)
T 3pfi_A          186 DSELALILQKAALK  199 (338)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999998877654

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.80  E-value=0.00014  Score=85.42  Aligned_cols=45  Identities=13%  Similarity=0.102  Sum_probs=38.7

Q ss_pred             ceEEEEeecCCCCCCChhhhccc-eEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHM-NIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f-~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ++.+++|+|.+. .+++.++||| ..++++.|+.+....|+..++..
T Consensus       154 ~v~vi~atn~~~-~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~  199 (322)
T 3eie_A          154 GVLVLGATNIPW-QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD  199 (322)
T ss_dssp             CEEEEEEESCGG-GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred             ceEEEEecCChh-hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhcc
Confidence            578899998774 4899999999 56999999999999999987764

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.78  E-value=1.5e-05  Score=84.79  Aligned_cols=61  Identities=16%  Similarity=0.214  Sum_probs=44.0

Q ss_pred             HhhccCCCC-C-c-cCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCC----CCCChhhhccceEeecCC
Q psy4730         890 ILDDLNMPQ-K-E-TYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTM----NTITGRLLRHMNIISIDS  962 (1513)
Q Consensus       890 ~~dd~n~p~-~-~-~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~----~~~~~r~~~~f~~~~~~~  962 (1513)
                      ++||+..-. . . ..+.+....+|+.+++.+              ++.++++++++.    ..+++++.+||..+.++.
T Consensus       120 ~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~  185 (187)
T 2p65_A          120 FIDEIHTVVGAGAVAEGALDAGNILKPMLARG--------------ELRCIGATTVSEYRQFIEKDKALERRFQQILVEQ  185 (187)
T ss_dssp             EETTGGGGSSSSSSCTTSCCTHHHHHHHHHTT--------------CSCEEEEECHHHHHHHTTTCHHHHHHEEEEECCS
T ss_pred             EEeCHHHhcccccccccchHHHHHHHHHHhcC--------------CeeEEEecCHHHHHHHHhccHHHHHhcCcccCCC
Confidence            348887322 1 1 334467788888887642              456888888762    468999999999999999


Q ss_pred             CC
Q psy4730         963 FN  964 (1513)
Q Consensus       963 ~~  964 (1513)
                      |+
T Consensus       186 p~  187 (187)
T 2p65_A          186 PS  187 (187)
T ss_dssp             CC
T ss_pred             CC
Confidence            86

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.77  E-value=4.1e-05  Score=91.22  Aligned_cols=46  Identities=20%  Similarity=0.104  Sum_probs=38.9

Q ss_pred             cceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhh
Q psy4730         932 VDIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       932 ~~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .++.++||+|.|. .|+|.|+|  ||. .++++.|+.+.-..|+..++..
T Consensus       286 ~~V~vIaATNrpd-~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~  334 (405)
T 4b4t_J          286 KNIKIIMATNRLD-ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRK  334 (405)
T ss_dssp             CCEEEEEEESCSS-SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT
T ss_pred             CCeEEEeccCChh-hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC
Confidence            3678899999875 49999999  886 5999999999999999877654

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=97.77  E-value=3.1e-05  Score=91.29  Aligned_cols=130  Identities=16%  Similarity=0.162  Sum_probs=88.1

Q ss_pred             HHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCC-CCChhhccccccC--CCCC--CccCHH
Q psy4730        1348 ILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPK-SITMGQLYGEFDS--ASHE--WRDGIL 1422 (1513)
Q Consensus      1348 ~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~-~~t~~eL~G~~~~--~t~e--W~DG~l 1422 (1513)
                      +....+++|+||||+|||++.+.+++.++.              .+..++.. ..+..+++|....  ..+.  |..|.+
T Consensus        43 l~~~~~vll~G~pGtGKT~la~~la~~~~~--------------~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l  108 (331)
T 2r44_A           43 ICTGGHILLEGVPGLAKTLSVNTLAKTMDL--------------DFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGPV  108 (331)
T ss_dssp             HHHTCCEEEESCCCHHHHHHHHHHHHHTTC--------------CEEEEECCTTCCHHHHHEEEEEETTTTEEEEEECTT
T ss_pred             HHcCCeEEEECCCCCcHHHHHHHHHHHhCC--------------CeEEEecCCCCChhhcCCceeecCCCCceEeccCcc
Confidence            334679999999999999999999887642              33445432 3456778876432  1222  344443


Q ss_pred             HHHHHHhhccCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCC-----CCCcchh
Q psy4730        1423 AKTFREMAVSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE-----FASPATV 1495 (1513)
Q Consensus      1423 ~~~lR~~~~~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~-----~asPatv 1495 (1513)
                                   ...++++|.  .+++.....|..++++. .+++ .|.....|.++.++.-+....     ...||..
T Consensus       109 -------------~~~vl~iDEi~~~~~~~~~~Ll~~l~~~-~~~~-~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~  173 (331)
T 2r44_A          109 -------------FSNFILADEVNRSPAKVQSALLECMQEK-QVTI-GDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQV  173 (331)
T ss_dssp             -------------CSSEEEEETGGGSCHHHHHHHHHHHHHS-EEEE-TTEEEECCSSCEEEEEECTTCCSCCCCCCHHHH
T ss_pred             -------------cccEEEEEccccCCHHHHHHHHHHHhcC-ceee-CCEEEECCCCEEEEEecCCCcccCcccCCHHHH
Confidence                         137999994  56777778888888765 4555 688888888777664333222     2789999


Q ss_pred             hccEE-EEeeCC
Q psy4730        1496 SRVGM-IYFELK 1506 (1513)
Q Consensus      1496 sRcg~-v~~~~~ 1506 (1513)
                      +||++ +.+++-
T Consensus       174 ~Rf~~~i~i~~p  185 (331)
T 2r44_A          174 DRFMMKIHLTYL  185 (331)
T ss_dssp             TTSSEEEECCCC
T ss_pred             hheeEEEEcCCC
Confidence            99997 777654

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.76  E-value=5.2e-05  Score=88.08  Aligned_cols=65  Identities=12%  Similarity=0.182  Sum_probs=47.2

Q ss_pred             HHHHHHHHhcCCccccCCceeeeecceEEEEeecCC---CCCCChhhhccce-EeecCCCChHHHHHHHHH
Q psy4730         908 VELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT---MNTITGRLLRHMN-IISIDSFNEATLSKIFTS  974 (1513)
Q Consensus       908 le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~---~~~~~~r~~~~f~-~~~~~~~~~~~l~~i~~~  974 (1513)
                      ...|.++++.+.++.+..  .....++.+++++++.   ...++|+|++||. .+.+++|+.+++..|...
T Consensus       145 ~~~Ll~~le~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~  213 (310)
T 1ofh_A          145 QRDLLPLVEGSTVSTKHG--MVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTE  213 (310)
T ss_dssp             HHHHHHHHHCCEEEETTE--EEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHS
T ss_pred             HHHHHHHhcCCeEecccc--cccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHh
Confidence            345566677665554332  2344578889887642   3579999999996 499999999999999884

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.75  E-value=6e-05  Score=91.14  Aligned_cols=46  Identities=26%  Similarity=0.146  Sum_probs=38.3

Q ss_pred             ceEEEEeecCCCCCCChhhhcc--ceE-eecCCCChHHHHHHHHHHhhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRH--MNI-ISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~--f~~-~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      ++.+|||+|.|. .|+|.|+|+  |-. ++++.|+.+.-..|+..++..+
T Consensus       320 ~vivI~ATNrp~-~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~  368 (437)
T 4b4t_L          320 QTKIIMATNRPD-TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV  368 (437)
T ss_dssp             SSEEEEEESSTT-SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTS
T ss_pred             CeEEEEecCCch-hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCC
Confidence            577899999874 589999986  764 9999999999999998877654

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.75  E-value=0.00015  Score=79.10  Aligned_cols=68  Identities=10%  Similarity=0.128  Sum_probs=49.1

Q ss_pred             hccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHH
Q psy4730         892 DDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKI  971 (1513)
Q Consensus       892 dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i  971 (1513)
                      ||+.....      ...+.|+.+++..            -.++.++++++.+ ..+.+++.+||..+.+++|+.+++..+
T Consensus       109 De~~~l~~------~~~~~l~~~l~~~------------~~~~~~i~~~~~~-~~~~~~l~~r~~~i~~~~~~~~~~~~~  169 (226)
T 2chg_A          109 DEADALTA------DAQAALRRTMEMY------------SKSCRFILSCNYV-SRIIEPIQSRCAVFRFKPVPKEAMKKR  169 (226)
T ss_dssp             ETGGGSCH------HHHHHHHHHHHHT------------TTTEEEEEEESCG-GGSCHHHHTTSEEEECCCCCHHHHHHH
T ss_pred             eChhhcCH------HHHHHHHHHHHhc------------CCCCeEEEEeCCh-hhcCHHHHHhCceeecCCCCHHHHHHH
Confidence            77664332      2456677777642            1246677777765 457899999999999999999999999


Q ss_pred             HHHHhhh
Q psy4730         972 FTSVLDW  978 (1513)
Q Consensus       972 ~~~~l~~  978 (1513)
                      +...+..
T Consensus       170 l~~~~~~  176 (226)
T 2chg_A          170 LLEICEK  176 (226)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887643

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=97.75  E-value=8.1e-05  Score=91.35  Aligned_cols=46  Identities=15%  Similarity=0.080  Sum_probs=39.9

Q ss_pred             cceEEEEeecCCCCCCChhhhccc-eEeecCCCChHHHHHHHHHHhhh
Q psy4730         932 VDIIYITAMIPTMNTITGRLLRHM-NIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       932 ~~~~~~~a~~~~~~~~~~r~~~~f-~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .++.+|+|+|++ ..+++.++||| ..++++.|+.+....|+..++..
T Consensus       270 ~~v~vI~atn~~-~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~  316 (444)
T 2zan_A          270 DGILVLGATNIP-WVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGS  316 (444)
T ss_dssp             SSCEEEEEESCG-GGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred             CCEEEEecCCCc-cccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhc
Confidence            468899999987 46899999999 57999999999999999887654

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.71  E-value=3.5e-05  Score=93.17  Aligned_cols=46  Identities=15%  Similarity=0.106  Sum_probs=38.9

Q ss_pred             ceEEEEeecCCCCCCChhhhc--cceE-eecCCCChHHHHHHHHHHhhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLR--HMNI-ISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~--~f~~-~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      ++.++||+|.|. .|+|.|+|  ||.. ++++.|+.+.-..|+..++..+
T Consensus       320 ~ViVIaaTNrp~-~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~  368 (434)
T 4b4t_M          320 RVKVLAATNRVD-VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKM  368 (434)
T ss_dssp             SSEEEEECSSCC-CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHS
T ss_pred             CEEEEEeCCCch-hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCC
Confidence            577899999874 48999998  8975 9999999999999998876654

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=97.71  E-value=0.00013  Score=86.27  Aligned_cols=82  Identities=12%  Similarity=0.212  Sum_probs=58.6

Q ss_pred             HHhhccCCCCCccCCCCChHHHHHHHHhcCC-ccccCCceeeeecceEEEEeecCCCCCCChhhhccceE-eecCCCChH
Q psy4730         889 MILDDLNMPQKETYGAQPAVELLRQIIDHKH-LYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNI-ISIDSFNEA  966 (1513)
Q Consensus       889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~-~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~-~~~~~~~~~  966 (1513)
                      +|+||++.-..      ...+.|.++++.|. .+.+.......-.++.+++|+||....+++.|++||.+ +.+++|+..
T Consensus       148 l~iDEi~~l~~------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~  221 (350)
T 1g8p_A          148 LYIDECNLLED------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDV  221 (350)
T ss_dssp             EEETTGGGSCH------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSH
T ss_pred             EEEeChhhCCH------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcH
Confidence            45699985443      26778888888764 34444434444458999999998766899999999987 999999544


Q ss_pred             -HHHHHHHHHh
Q psy4730         967 -TLSKIFTSVL  976 (1513)
Q Consensus       967 -~l~~i~~~~l  976 (1513)
                       ....|....+
T Consensus       222 ~~~~~il~~~~  232 (350)
T 1g8p_A          222 ETRVEVIRRRD  232 (350)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence             5547776654

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.70  E-value=4.8e-05  Score=89.37  Aligned_cols=43  Identities=19%  Similarity=0.264  Sum_probs=33.6

Q ss_pred             EEEEeecCCC--CCCChhhhccc---eEeecCCCChHHHHHHHHHHhhh
Q psy4730         935 IYITAMIPTM--NTITGRLLRHM---NIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       935 ~~~~a~~~~~--~~~~~r~~~~f---~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .++++.+++.  ..+++++.+||   .++.+++ +.++...|+...+..
T Consensus       134 iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~  181 (324)
T 1l8q_A          134 IILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKE  181 (324)
T ss_dssp             EEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHH
T ss_pred             EEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHh
Confidence            4455555553  47999999999   7899999 999999988887653

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.69  E-value=5.2e-05  Score=91.54  Aligned_cols=46  Identities=20%  Similarity=0.189  Sum_probs=37.5

Q ss_pred             ceEEEEeecCCCCCCChhhhc--cceE-eecC-CCChHHHHHHHHHHhhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLR--HMNI-ISID-SFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~--~f~~-~~~~-~~~~~~l~~i~~~~l~~~  979 (1513)
                      ++.+|||+|.|. .|+|.|+|  ||.. ++++ .|+.+.-..|+..++..+
T Consensus       311 ~v~vI~aTN~~~-~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~  360 (428)
T 4b4t_K          311 NVKVIMATNRAD-TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM  360 (428)
T ss_dssp             SEEEEEEESCSS-SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS
T ss_pred             CEEEEEecCChh-hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence            578899999875 49999999  8874 8885 799999999998876543

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.69  E-value=0.00045  Score=80.75  Aligned_cols=79  Identities=16%  Similarity=0.159  Sum_probs=52.6

Q ss_pred             hccCCCCCccCCCCChHHHHHHHHhcCCccccC-----C-ceeeeecceEEEEeecCCCCCCChhhhccc-eEeecCCCC
Q psy4730         892 DDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQ-----T-VTRVDLVDIIYITAMIPTMNTITGRLLRHM-NIISIDSFN  964 (1513)
Q Consensus       892 dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~-----~-~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f-~~~~~~~~~  964 (1513)
                      ||+.....      ...+.|..+++.+.+.-..     . .......++.+++|++.+. .+.+.+++|| .++.+++|+
T Consensus        97 DEi~~l~~------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~-~~~~~l~~R~~~~i~l~~~~  169 (324)
T 1hqc_A           97 DEIHRLSR------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPG-LITAPLLSRFGIVEHLEYYT  169 (324)
T ss_dssp             TTTTSCCH------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCS-SCSCSTTTTCSCEEECCCCC
T ss_pred             ECCccccc------chHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcc-cCCHHHHhcccEEEecCCCC
Confidence            88773321      2456666677765433111     0 1111224788999999873 5778899999 589999999


Q ss_pred             hHHHHHHHHHHhh
Q psy4730         965 EATLSKIFTSVLD  977 (1513)
Q Consensus       965 ~~~l~~i~~~~l~  977 (1513)
                      .+++..++..++.
T Consensus       170 ~~e~~~~l~~~~~  182 (324)
T 1hqc_A          170 PEELAQGVMRDAR  182 (324)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999888887654

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.69  E-value=9.6e-05  Score=87.20  Aligned_cols=120  Identities=17%  Similarity=0.214  Sum_probs=82.3

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
                      .+|+|+||||||||++.+.+++.++              ..+..+|...++               ..|-+..++++.  
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~~--------------~~~~~~~~~~~~---------------~~~~~~~~~~~~--  104 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEMS--------------ANIKTTAAPMIE---------------KSGDLAAILTNL--  104 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHTT--------------CCEEEEEGGGCC---------------SHHHHHHHHHTC--
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhC--------------CCeEEecchhcc---------------chhHHHHHHHhc--
Confidence            5899999999999999999977653              234445544332               123344444432  


Q ss_pred             cCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCC----C--eeecCCCCeEEEeecCCCCCCcchhhcc-EEEE
Q psy4730        1432 STTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLING----E--IIKMSNTMNLIFECENLEFASPATVSRV-GMIY 1502 (1513)
Q Consensus      1432 ~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nG----e--~i~~~~~~~~iFE~~~l~~asPatvsRc-g~v~ 1502 (1513)
                         .....+++|  +.+++.+.+.|.++|++.+...+..+    .  ++..| ++.++.-|.......|+..+|| -.+.
T Consensus       105 ---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~atn~~~~l~~~L~~R~~~~i~  180 (338)
T 3pfi_A          105 ---SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP-KFTLIGATTRAGMLSNPLRDRFGMQFR  180 (338)
T ss_dssp             ---CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC-CCEEEEEESCGGGSCHHHHTTCSEEEE
T ss_pred             ---cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC-CeEEEEeCCCccccCHHHHhhcCEEee
Confidence               345789999  56788999999999988764433221    2  23344 7899999999889999999999 5566


Q ss_pred             eeCC
Q psy4730        1503 FELK 1506 (1513)
Q Consensus      1503 ~~~~ 1506 (1513)
                      +.+-
T Consensus       181 l~~~  184 (338)
T 3pfi_A          181 LEFY  184 (338)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            6553

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.67  E-value=6e-05  Score=90.05  Aligned_cols=47  Identities=21%  Similarity=0.147  Sum_probs=39.4

Q ss_pred             cceEEEEeecCCCCCCChhhhc--cceE-eecCCCChHHHHHHHHHHhhhh
Q psy4730         932 VDIIYITAMIPTMNTITGRLLR--HMNI-ISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       932 ~~~~~~~a~~~~~~~~~~r~~~--~f~~-~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      .++.+|||+|.|. .|+|.|+|  ||-. ++++.|+.+.-..|+..++..+
T Consensus       320 ~~ViVIaATNrpd-~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~  369 (437)
T 4b4t_I          320 GDVKVIMATNKIE-TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM  369 (437)
T ss_dssp             SSEEEEEEESCST-TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred             CCEEEEEeCCChh-hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC
Confidence            3678899999875 59999999  8875 9999999999999998876543

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.66  E-value=7.4e-05  Score=83.05  Aligned_cols=42  Identities=7%  Similarity=0.046  Sum_probs=32.9

Q ss_pred             EEEeecC-C--CCCCChhhhccc---eEeecCCCChHHHHHHHHHHhh
Q psy4730         936 YITAMIP-T--MNTITGRLLRHM---NIISIDSFNEATLSKIFTSVLD  977 (1513)
Q Consensus       936 ~~~a~~~-~--~~~~~~r~~~~f---~~~~~~~~~~~~l~~i~~~~l~  977 (1513)
                      ++.+++. +  ...+.+++.+||   ..+.+++|+.+++..++...+.
T Consensus       141 ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~  188 (242)
T 3bos_A          141 LIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAA  188 (242)
T ss_dssp             EEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHH
T ss_pred             EEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHH
Confidence            4444443 3  335669999999   8999999999999999988765

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.65  E-value=0.0003  Score=81.69  Aligned_cols=47  Identities=11%  Similarity=0.031  Sum_probs=38.4

Q ss_pred             ceEEEEeecCC---CCCCChhhhccc--eEeecCCCChHHHHHHHHHHhhhh
Q psy4730         933 DIIYITAMIPT---MNTITGRLLRHM--NIISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       933 ~~~~~~a~~~~---~~~~~~r~~~~f--~~~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      .+.+|+..|..   ...+++|+.+||  .++.+++++.+++..|...-+...
T Consensus       163 ~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~  214 (318)
T 3te6_A          163 KLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSL  214 (318)
T ss_dssp             CEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred             cEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence            46777777765   335788999998  579999999999999999988763

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.64  E-value=0.00032  Score=79.30  Aligned_cols=46  Identities=20%  Similarity=0.241  Sum_probs=38.1

Q ss_pred             ceEEEEeecCCCCCCChhhhc--cc-eEeecCCCChHHHHHHHHHHhhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLR--HM-NIISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~--~f-~~~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      ++.+++++|++. .+++.++|  || ..++++.|+.++...|+..++...
T Consensus       145 ~~~vi~~tn~~~-~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~  193 (262)
T 2qz4_A          145 HVIVLASTNRAD-ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSL  193 (262)
T ss_dssp             CEEEEEEESCGG-GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHT
T ss_pred             CEEEEecCCChh-hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhC
Confidence            678889988763 57889998  99 579999999999999998877653

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=97.64  E-value=6.4e-05  Score=92.93  Aligned_cols=142  Identities=11%  Similarity=0.203  Sum_probs=88.0

Q ss_pred             HHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHH
Q psy4730        1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILA 1423 (1513)
Q Consensus      1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~ 1423 (1513)
                      +..++..+.+|+|+||||+|||++.+.++..+..            ...+..++....+..+++|.++... .-..|.+.
T Consensus        34 l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~~------------~~~f~~~~~~~~t~~dL~G~~~~~~-~~~~g~~~  100 (500)
T 3nbx_X           34 CLLAALSGESVFLLGPPGIAKSLIARRLKFAFQN------------ARAFEYLMTRFSTPEEVFGPLSIQA-LKDEGRYE  100 (500)
T ss_dssp             HHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBSS------------CCEEEEECCTTCCHHHHHCCBC-----------C
T ss_pred             HHHHHhcCCeeEeecCchHHHHHHHHHHHHHHhh------------hhHHHHHHHhcCCHHHhcCcccHHH-HhhchhHH
Confidence            3445567889999999999999999999876531            1223445555557899999764211 00112111


Q ss_pred             HHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCC---CCcchhhcc
Q psy4730        1424 KTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEF---ASPATVSRV 1498 (1513)
Q Consensus      1424 ~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~---asPatvsRc 1498 (1513)
                      .    .....-....++++|  +..++.....|-.+|++. .++. .|.....|..+ +++.|..+..   ..+|...|+
T Consensus       101 ~----~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~-~v~i-~G~~~~~~~~~-iI~ATN~lpe~~~~~~aLldRF  173 (500)
T 3nbx_X          101 R----LTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINER-QFRN-GAHVEKIPMRL-LVAASNELPEADSSLEALYDRM  173 (500)
T ss_dssp             B----CCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSS-EEEC-SSSEEECCCCE-EEEEESSCCCTTCTTHHHHTTC
T ss_pred             h----hhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHH-hccC-CCCcCCcchhh-hhhccccCCCccccHHHHHHHH
Confidence            0    000000124689999  556788888888888765 4444 67777777664 5777765533   345899998


Q ss_pred             EE-EEeeC
Q psy4730        1499 GM-IYFEL 1505 (1513)
Q Consensus      1499 g~-v~~~~ 1505 (1513)
                      .+ |++++
T Consensus       174 ~~~i~v~~  181 (500)
T 3nbx_X          174 LIRLWLDK  181 (500)
T ss_dssp             CEEEECCS
T ss_pred             HHHHHHHH
Confidence            65 55554

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=97.64  E-value=0.00026  Score=82.98  Aligned_cols=46  Identities=9%  Similarity=0.072  Sum_probs=38.4

Q ss_pred             cceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         932 VDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       932 ~~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .++.+|+++|++. .+++++.+||.++.+++|+.+++..|+..++..
T Consensus       135 ~~~~iI~~~n~~~-~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~  180 (324)
T 3u61_B          135 SNCSIIITANNID-GIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRR  180 (324)
T ss_dssp             GGCEEEEEESSGG-GSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCcc-ccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHH
Confidence            3578888888865 588999999999999999999988887776544

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=97.64  E-value=0.00014  Score=89.06  Aligned_cols=45  Identities=16%  Similarity=0.301  Sum_probs=38.3

Q ss_pred             eEEEEeecCC-CCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         934 IIYITAMIPT-MNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       934 ~~~~~a~~~~-~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      +.+|+|+... ...+.+.+++|+.++.+.+|+.+++..+....+..
T Consensus       135 v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~  180 (447)
T 3pvs_A          135 ITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMED  180 (447)
T ss_dssp             CEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHC
T ss_pred             eEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHH
Confidence            5677776543 66899999999999999999999999999988764

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.64  E-value=0.0002  Score=83.84  Aligned_cols=121  Identities=19%  Similarity=0.229  Sum_probs=82.5

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC-hhhccccccCCCCCCccCHHHHHHHHh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-MGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t-~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
                      .++|+|+||||+|||++.+.+++.++              ..+..++...++ ..+++|.                ++. 
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~~~--------------~~~~~~~~~~~~~~~~l~~~----------------l~~-   86 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHELG--------------VNLRVTSGPAIEKPGDLAAI----------------LAN-   86 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHHHT--------------CCEEEECTTTCCSHHHHHHH----------------HTT-
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHhC--------------CCEEEEeccccCChHHHHHH----------------HHH-
Confidence            46899999999999999999988764              234455655443 2333332                222 


Q ss_pred             hccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecC-CC---eee-cCCCCeEEEeecCCCCCCcchhhccE-EE
Q psy4730        1430 AVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLIN-GE---IIK-MSNTMNLIFECENLEFASPATVSRVG-MI 1501 (1513)
Q Consensus      1430 ~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~n-Ge---~i~-~~~~~~~iFE~~~l~~asPatvsRcg-~v 1501 (1513)
                         .......+++|  +.+++...+.|..+|++...-.+.. +.   .+. .++++.++..+.......|+..+||+ .+
T Consensus        87 ---~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i  163 (324)
T 1hqc_A           87 ---SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVE  163 (324)
T ss_dssp             ---TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEE
T ss_pred             ---hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEE
Confidence               12345799999  5677878888888888765433322 21   122 23578999999888889999999995 67


Q ss_pred             EeeC
Q psy4730        1502 YFEL 1505 (1513)
Q Consensus      1502 ~~~~ 1505 (1513)
                      .+.+
T Consensus       164 ~l~~  167 (324)
T 1hqc_A          164 HLEY  167 (324)
T ss_dssp             ECCC
T ss_pred             ecCC
Confidence            7765

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.59  E-value=0.00015  Score=87.41  Aligned_cols=46  Identities=17%  Similarity=0.116  Sum_probs=38.9

Q ss_pred             ceEEEEeecCCCCCCChhhhc--cceE-eecCCCChHHHHHHHHHHhhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLR--HMNI-ISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~--~f~~-~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      ++.+|||+|.|. .|+|.|+|  ||-. ++++.|+.+....|+..++..+
T Consensus       348 ~ViVIaATNrpd-~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~  396 (467)
T 4b4t_H          348 NIKVMFATNRPN-TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSM  396 (467)
T ss_dssp             TEEEEEECSCTT-SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred             cEEEEeCCCCcc-cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCC
Confidence            678899999865 59999999  8965 9999999999999998876543

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.57  E-value=0.00011  Score=85.23  Aligned_cols=46  Identities=22%  Similarity=0.227  Sum_probs=37.7

Q ss_pred             cceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhh
Q psy4730         932 VDIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       932 ~~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .++.+++|+|.+. .+++.++|  ||. .++++.|+.+....|+..++..
T Consensus       153 ~~v~vi~atn~~~-~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~  201 (301)
T 3cf0_A          153 KNVFIIGATNRPD-IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK  201 (301)
T ss_dssp             SSEEEEEEESCGG-GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred             CCEEEEEecCCcc-ccChHHhcCCccceEEecCCcCHHHHHHHHHHHHcc
Confidence            3688999998873 48899998  884 6999999999999988776643

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.55  E-value=0.00034  Score=83.67  Aligned_cols=47  Identities=9%  Similarity=0.128  Sum_probs=39.1

Q ss_pred             cceEEEEeecCC--CCCCChhhhccc--eEeecCCCChHHHHHHHHHHhhh
Q psy4730         932 VDIIYITAMIPT--MNTITGRLLRHM--NIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       932 ~~~~~~~a~~~~--~~~~~~r~~~~f--~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .++.+|++++.+  ...+.+++.+||  ..+.+++|+.+++..|+...+..
T Consensus       166 ~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~  216 (387)
T 2v1u_A          166 VWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEE  216 (387)
T ss_dssp             --CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHh
Confidence            367888888875  467899999999  78999999999999999988764

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.54  E-value=0.00015  Score=86.89  Aligned_cols=58  Identities=14%  Similarity=0.264  Sum_probs=44.5

Q ss_pred             cceEEEEeecCC--CCCCChhhhccc-eEeecCCCChHHHHHHHHHHhhhhhh-ccchhHHH
Q psy4730         932 VDIIYITAMIPT--MNTITGRLLRHM-NIISIDSFNEATLSKIFTSVLDWHFS-KGFADSIV  989 (1513)
Q Consensus       932 ~~~~~~~a~~~~--~~~~~~r~~~~f-~~~~~~~~~~~~l~~i~~~~l~~~~~-~~f~~~~~  989 (1513)
                      .++.++++++.+  ...+.+++.+|| ..+.+++|+.+++..|+...+...+. ..++++..
T Consensus       163 ~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~  224 (384)
T 2qby_B          163 ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEIL  224 (384)
T ss_dssp             SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHH
T ss_pred             cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHH
Confidence            578888888875  467999999998 57999999999999999998764332 23544433

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.54  E-value=4e-05  Score=88.72  Aligned_cols=69  Identities=13%  Similarity=0.112  Sum_probs=40.9

Q ss_pred             hHHHHHHHHhcCCccccCCc-eeeeecceEEEEeecCCCCCCChhhhc--cceEeecCCCChHHHHHHHHHHhh
Q psy4730         907 AVELLRQIIDHKHLYDFQTV-TRVDLVDIIYITAMIPTMNTITGRLLR--HMNIISIDSFNEATLSKIFTSVLD  977 (1513)
Q Consensus       907 ~le~lr~~~~~~~~yd~~~~-~~~~~~~~~~~~a~~~~~~~~~~r~~~--~f~~~~~~~~~~~~l~~i~~~~l~  977 (1513)
                      +...|-+++|...+...... ......++.+|+|+|.+ ..+++.++|  ||..+.. .|+.++...|+..++.
T Consensus       128 v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~-~~ld~al~R~~R~d~~i~-~P~~~~r~~Il~~~~~  199 (293)
T 3t15_A          128 VNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDF-STLYAPLIRDGRMEKFYW-APTREDRIGVCTGIFR  199 (293)
T ss_dssp             HHHHHHHHHHCCC-----------CCCCCCEEEECSSC-CC--CHHHHHHHEEEEEE-CCCHHHHHHHHHHHHG
T ss_pred             HHHHHHHHhccccccccccccccccCCCcEEEEecCCc-ccCCHHHhCCCCCceeEe-CcCHHHHHHHHHHhcc
Confidence            44666677764433222211 12234578899999976 358889987  7765332 5799999999987664

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.53  E-value=0.0004  Score=86.87  Aligned_cols=68  Identities=12%  Similarity=0.029  Sum_probs=45.8

Q ss_pred             hccC-CCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHH
Q psy4730         892 DDLN-MPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSK  970 (1513)
Q Consensus       892 dd~n-~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~  970 (1513)
                      ||+. ++..    .+..++.|.++++.+              +..++++++.+....-+++.|+...+.+++|+.+++..
T Consensus       155 DEid~l~~~----~~~~l~~L~~~l~~~--------------~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~  216 (516)
T 1sxj_A          155 DEVDGMSGG----DRGGVGQLAQFCRKT--------------STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKS  216 (516)
T ss_dssp             CSGGGCCTT----STTHHHHHHHHHHHC--------------SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHH
T ss_pred             ECCCccchh----hHHHHHHHHHHHHhc--------------CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHH
Confidence            7775 4332    355677777777642              23355566655433334578888899999999999999


Q ss_pred             HHHHHhh
Q psy4730         971 IFTSVLD  977 (1513)
Q Consensus       971 i~~~~l~  977 (1513)
                      ++..++.
T Consensus       217 ~L~~i~~  223 (516)
T 1sxj_A          217 RLMTIAI  223 (516)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887754

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.52  E-value=0.00027  Score=77.05  Aligned_cols=117  Identities=19%  Similarity=0.231  Sum_probs=75.3

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhcc
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVS 1432 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~~ 1432 (1513)
                      +++|+||+|+|||++.+.+++.+..-..         ...+..+++....     |          ...+...++.....
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~---------~~~~~~~~~~~~~-----~----------~~~~~~~~~~~~~~   95 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDLFGENW---------RDNFIEMNASDER-----G----------IDVVRHKIKEFART   95 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHGGGG---------GGGEEEEETTCTT-----C----------HHHHHHHHHHHHTS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhcccc---------ccceEEecccccc-----C----------hHHHHHHHHHHhcc
Confidence            5999999999999999999987643111         1233444443211     0          01122223332221


Q ss_pred             ---CCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeCC
Q psy4730        1433 ---TTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1433 ---~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
                         .......|++|.  .+++...+.|..++++.             ++++.+++-+.......|+..+||..+.+.+-
T Consensus        96 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~  161 (226)
T 2chg_A           96 APIGGAPFKIIFLDEADALTADAQAALRRTMEMY-------------SKSCRFILSCNYVSRIIEPIQSRCAVFRFKPV  161 (226)
T ss_dssp             CCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred             cCCCccCceEEEEeChhhcCHHHHHHHHHHHHhc-------------CCCCeEEEEeCChhhcCHHHHHhCceeecCCC
Confidence               124568999994  45666677787777652             45677888777777788999999998888653

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=97.50  E-value=0.00014  Score=82.78  Aligned_cols=137  Identities=12%  Similarity=0.142  Sum_probs=88.8

Q ss_pred             HHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCC---CCCC
Q psy4730        1345 YEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSA---SHEW 1417 (1513)
Q Consensus      1345 ~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~---t~eW 1417 (1513)
                      ..+.....+|+|+||||+|||++.+.++.....-           ...+..+|+..++    ..+|||.....   ....
T Consensus        23 ~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~-----------~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~   91 (265)
T 2bjv_A           23 SHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW-----------QGPFISLNCAALNENLLDSELFGHEAGAFTGAQKR   91 (265)
T ss_dssp             HHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT-----------TSCEEEEEGGGSCHHHHHHHHHCCC---------C
T ss_pred             HHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc-----------CCCeEEEecCCCChhHHHHHhcCCccccccccccc
Confidence            3344567899999999999999999998765421           1345678877776    35677753210   0113


Q ss_pred             ccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCC-------C
Q psy4730        1418 RDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL-------E 1488 (1513)
Q Consensus      1418 ~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l-------~ 1488 (1513)
                      ..|.+..+          ....+++|  +.+++...+.|..+|++...  -+.|.....+.++++|+-+..-       .
T Consensus        92 ~~~~l~~a----------~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~--~~~g~~~~~~~~~~iI~atn~~~~~~~~~~  159 (265)
T 2bjv_A           92 HPGRFERA----------DGGTLFLDELATAPMMVQEKLLRVIEYGEL--ERVGGSQPLQVNVRLVCATNADLPAMVNEG  159 (265)
T ss_dssp             CCCHHHHT----------TTSEEEEESGGGSCHHHHHHHHHHHHHCEE--CCCCC--CEECCCEEEEEESSCHHHHHHHT
T ss_pred             ccchhhhc----------CCcEEEEechHhcCHHHHHHHHHHHHhCCe--ecCCCcccccCCeEEEEecCcCHHHHHHcC
Confidence            44554321          13689999  56778888888888886642  2345555667789999977642       2


Q ss_pred             CCCcchhhccEEEEee
Q psy4730        1489 FASPATVSRVGMIYFE 1504 (1513)
Q Consensus      1489 ~asPatvsRcg~v~~~ 1504 (1513)
                      ...|+..+|+..+.+.
T Consensus       160 ~~~~~L~~Rl~~~~i~  175 (265)
T 2bjv_A          160 TFRADLLDALAFDVVQ  175 (265)
T ss_dssp             SSCHHHHHHHCSEEEE
T ss_pred             CccHHHHHhhcCcEEe
Confidence            4578999999654443

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.47  E-value=0.00055  Score=81.44  Aligned_cols=46  Identities=13%  Similarity=0.079  Sum_probs=38.9

Q ss_pred             cceEEEEeecCCCCCCChhhhccce-EeecCCCChHHHHHHHHHHhhh
Q psy4730         932 VDIIYITAMIPTMNTITGRLLRHMN-IISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       932 ~~~~~~~a~~~~~~~~~~r~~~~f~-~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .++.+|+|+|++. .+++.++|||. .++++.|+.+....|+..++..
T Consensus       220 ~~v~vI~atn~~~-~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~  266 (357)
T 3d8b_A          220 DRILVVGATNRPQ-EIDEAARRRLVKRLYIPLPEASARKQIVINLMSK  266 (357)
T ss_dssp             CCEEEEEEESCGG-GBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred             CCEEEEEecCChh-hCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhh
Confidence            3688999998863 58899999997 6899999999999999887654

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=97.46  E-value=0.00021  Score=88.34  Aligned_cols=77  Identities=16%  Similarity=0.210  Sum_probs=48.0

Q ss_pred             HhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC--CCCCChhhhccceE-eecCCCCh-
Q psy4730         890 ILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT--MNTITGRLLRHMNI-ISIDSFNE-  965 (1513)
Q Consensus       890 ~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~--~~~~~~r~~~~f~~-~~~~~~~~-  965 (1513)
                      |+||+|...      ......|...++.+.+...+. . .....-.+++|+||.  .....+.+++||.. +.+++|+. 
T Consensus       114 ~IDEI~r~~------~~~q~~LL~~lee~~v~i~G~-~-~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~  185 (500)
T 3nbx_X          114 FLDEIWKAG------PAILNTLLTAINERQFRNGAH-V-EKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKVQDK  185 (500)
T ss_dssp             EEESGGGCC------HHHHHHHHHHHHSSEEECSSS-E-EECCCCEEEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCH
T ss_pred             eHHhHhhhc------HHHHHHHHHHHHHHhccCCCC-c-CCcchhhhhhccccCCCccccHHHHHHHHHHHHHHHHhhhh
Confidence            359997433      235677777777665543222 1 222222357788863  23455799999976 88999998 


Q ss_pred             HHHHHHHHH
Q psy4730         966 ATLSKIFTS  974 (1513)
Q Consensus       966 ~~l~~i~~~  974 (1513)
                      ++...|...
T Consensus       186 ee~~~IL~~  194 (500)
T 3nbx_X          186 ANFRSMLTS  194 (500)
T ss_dssp             HHHHHHHTC
T ss_pred             hhHHHHHhc
Confidence            566677654

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.44  E-value=0.00075  Score=80.45  Aligned_cols=80  Identities=16%  Similarity=0.216  Sum_probs=50.3

Q ss_pred             HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeee-cceEEEEeecC-CCCCCChhhhccceEeecCCCChH
Q psy4730         889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDL-VDIIYITAMIP-TMNTITGRLLRHMNIISIDSFNEA  966 (1513)
Q Consensus       889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~-~~~~~~~a~~~-~~~~~~~r~~~~f~~~~~~~~~~~  966 (1513)
                      +|+||++.-..      ...+.|+.+++....    ..-.+.- ..+.+++++.. +...+++.+++||..+.+++|+.+
T Consensus       193 l~IDEi~~l~~------~~~~~L~~~le~~~~----~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~  262 (368)
T 3uk6_A          193 LFIDEVHMLDI------ESFSFLNRALESDMA----PVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEK  262 (368)
T ss_dssp             EEEESGGGSBH------HHHHHHHHHTTCTTC----CEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHH
T ss_pred             EEEhhccccCh------HHHHHHHHHhhCcCC----CeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHH
Confidence            56799984432      256666666654211    0000000 12334433322 245799999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy4730         967 TLSKIFTSVLDW  978 (1513)
Q Consensus       967 ~l~~i~~~~l~~  978 (1513)
                      ++..|+...+..
T Consensus       263 e~~~il~~~~~~  274 (368)
T 3uk6_A          263 DTKQILRIRCEE  274 (368)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999987654

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.43  E-value=0.00012  Score=85.24  Aligned_cols=120  Identities=18%  Similarity=0.187  Sum_probs=74.1

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
                      ++++|+||||+|||++.+.+++.+.......       ...+..+++..+. .+++|..        .+-+..+++..  
T Consensus        68 ~~vll~G~~GtGKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~l~-~~~~g~~--------~~~~~~~~~~~--  129 (309)
T 3syl_A           68 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVR-------KGHLVSVTRDDLV-GQYIGHT--------APKTKEVLKRA--  129 (309)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHHHTTSSS-------SCCEEEECGGGTC-CSSTTCH--------HHHHHHHHHHH--
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCcC-------CCcEEEEcHHHhh-hhccccc--------HHHHHHHHHhc--
Confidence            3799999999999999999999887532111       1234556654332 2333321        11223444443  


Q ss_pred             cCCCCceEEEEcC-----------CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecC-----CCCCCcchh
Q psy4730        1432 STTPDRKWIMFDG-----------PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN-----LEFASPATV 1495 (1513)
Q Consensus      1432 ~~~~~~~WivfDG-----------~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~-----l~~asPatv 1495 (1513)
                          ....+++|.           +.++..++.|..+|++.             +.++.+|+-+..     +....|+..
T Consensus       130 ----~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~-------------~~~~~~i~~~~~~~~~~~~~~~~~l~  192 (309)
T 3syl_A          130 ----MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN-------------RDDLVVILAGYADRMENFFQSNPGFR  192 (309)
T ss_dssp             ----TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC-------------TTTCEEEEEECHHHHHHHHHHSTTHH
T ss_pred             ----CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC-------------CCCEEEEEeCChHHHHHHHhhCHHHH
Confidence                236889993           23677778888888764             256666666532     112349999


Q ss_pred             hcc-EEEEeeCC
Q psy4730        1496 SRV-GMIYFELK 1506 (1513)
Q Consensus      1496 sRc-g~v~~~~~ 1506 (1513)
                      +|| -.|+|.+-
T Consensus       193 ~R~~~~i~~~~~  204 (309)
T 3syl_A          193 SRIAHHIEFPDY  204 (309)
T ss_dssp             HHEEEEEEECCC
T ss_pred             HhCCeEEEcCCc
Confidence            999 66677653

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.43  E-value=0.00037  Score=87.56  Aligned_cols=137  Identities=15%  Similarity=0.093  Sum_probs=76.4

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCC-ChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI-TMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~-t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
                      ...++|+|||||||||+.+.++..++.              ....++...+ +..+++|.... .-....|-+..+++.+
T Consensus       108 g~~vll~Gp~GtGKTtlar~ia~~l~~--------------~~~~i~~~~~~~~~~~~g~~~~-~ig~~~~~~~~~~~~a  172 (543)
T 3m6a_A          108 GPILCLAGPPGVGKTSLAKSIAKSLGR--------------KFVRISLGGVRDESEIRGHRRT-YVGAMPGRIIQGMKKA  172 (543)
T ss_dssp             SCEEEEESSSSSSHHHHHHHHHHHHTC--------------EEEEECCCC---------------------CHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCC--------------CeEEEEecccchhhhhhhHHHH-HhccCchHHHHHHHHh
Confidence            347999999999999999999988742              3455555543 35566664321 1112233333444433


Q ss_pred             hccCCCCceEEEEcC--CCChH----HHHhhhcccCCCCce-eecCCCeeecC-CCCeEEEeecCCCCCCcchhhccEEE
Q psy4730        1430 AVSTTPDRKWIMFDG--PIDAV----WIENMNTVLDDNKKL-CLINGEIIKMS-NTMNLIFECENLEFASPATVSRVGMI 1501 (1513)
Q Consensus      1430 ~~~~~~~~~WivfDG--~~d~~----wiE~LNsvLDdn~~L-~L~nGe~i~~~-~~~~~iFE~~~l~~asPatvsRcg~v 1501 (1513)
                      .    ...--+++|.  -+.+.    -.+.|-.+||+...- ....+....++ +++.+|.-+..+....||..+||-+|
T Consensus       173 ~----~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi  248 (543)
T 3m6a_A          173 G----KLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEII  248 (543)
T ss_dssp             C----SSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEE
T ss_pred             h----ccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhccee
Confidence            1    1223777883  23333    346777888864322 22333333333 67888888888899999999999998


Q ss_pred             EeeCC
Q psy4730        1502 YFELK 1506 (1513)
Q Consensus      1502 ~~~~~ 1506 (1513)
                      ++++-
T Consensus       249 ~~~~~  253 (543)
T 3m6a_A          249 NIAGY  253 (543)
T ss_dssp             ECCCC
T ss_pred             eeCCC
Confidence            88763

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.42  E-value=0.00017  Score=96.01  Aligned_cols=83  Identities=17%  Similarity=0.323  Sum_probs=63.1

Q ss_pred             HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC-------------------------
Q psy4730         889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT-------------------------  943 (1513)
Q Consensus       889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~-------------------------  943 (1513)
                      +|+||+.....      .+...|.++++.|.+-|.. ...+...++.+|+|+|.+                         
T Consensus       664 l~lDEi~~l~~------~~~~~Ll~~l~~~~~~~~~-g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~  736 (854)
T 1qvr_A          664 ILFDEIEKAHP------DVFNILLQILDDGRLTDSH-GRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVL  736 (854)
T ss_dssp             EEESSGGGSCH------HHHHHHHHHHTTTEECCSS-SCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             EEEecccccCH------HHHHHHHHHhccCceECCC-CCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHH
Confidence            45688874432      4788999999988876544 334556788899999973                         


Q ss_pred             CCCCChhhhccc-eEeecCCCChHHHHHHHHHHhhh
Q psy4730         944 MNTITGRLLRHM-NIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       944 ~~~~~~r~~~~f-~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      +..+.|.|++|+ .++...+|+.+++..|...++..
T Consensus       737 ~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~  772 (854)
T 1qvr_A          737 QQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSY  772 (854)
T ss_dssp             HTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred             HhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHH
Confidence            345789999999 56778889999999999987764

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.40  E-value=0.0003  Score=84.75  Aligned_cols=46  Identities=15%  Similarity=0.120  Sum_probs=39.1

Q ss_pred             cceEEEEeecCCCCCCChhhhccce-EeecCCCChHHHHHHHHHHhhh
Q psy4730         932 VDIIYITAMIPTMNTITGRLLRHMN-IISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       932 ~~~~~~~a~~~~~~~~~~r~~~~f~-~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .++.+|+|+|++. .+++.++|||. .++++.|+.+....|+..++..
T Consensus       251 ~~v~vI~atn~~~-~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~  297 (389)
T 3vfd_A          251 DRVLVMGATNRPQ-ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCK  297 (389)
T ss_dssp             -CEEEEEEESCGG-GCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred             CCEEEEEecCCch-hcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHh
Confidence            3688999998864 68999999995 7999999999999999887654

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.37  E-value=0.00014  Score=86.67  Aligned_cols=46  Identities=13%  Similarity=0.089  Sum_probs=39.4

Q ss_pred             cceEEEEeecCCCCCCChhhhccc-eEeecCCCChHHHHHHHHHHhhh
Q psy4730         932 VDIIYITAMIPTMNTITGRLLRHM-NIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       932 ~~~~~~~a~~~~~~~~~~r~~~~f-~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .++.+++|+|.+. .+++.++||| ..++++.|+.+....|+..++..
T Consensus       186 ~~v~vI~atn~~~-~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~  232 (355)
T 2qp9_X          186 QGVLVLGATNIPW-QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD  232 (355)
T ss_dssp             CCEEEEEEESCGG-GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred             CCeEEEeecCCcc-cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhh
Confidence            3688999999874 6899999999 67999999999999999887654

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.36  E-value=0.0012  Score=79.05  Aligned_cols=76  Identities=13%  Similarity=0.152  Sum_probs=51.7

Q ss_pred             HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC--CCCCChhhhccce--EeecCCCC
Q psy4730         889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT--MNTITGRLLRHMN--IISIDSFN  964 (1513)
Q Consensus       889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~--~~~~~~r~~~~f~--~~~~~~~~  964 (1513)
                      +++||+..-      .+..++.|..+++..   ..     ....++.++++++.+  ...+.+++.+||.  .+.+++++
T Consensus       129 lilDE~~~l------~~~~~~~L~~~~~~~---~~-----~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~  194 (389)
T 1fnn_A          129 LVLDDAFNL------APDILSTFIRLGQEA---DK-----LGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYT  194 (389)
T ss_dssp             EEEETGGGS------CHHHHHHHHHHTTCH---HH-----HSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCB
T ss_pred             EEEECcccc------chHHHHHHHHHHHhC---CC-----CCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCC
Confidence            456888643      234566665555421   00     000267788888776  3458999999998  69999999


Q ss_pred             hHHHHHHHHHHhhh
Q psy4730         965 EATLSKIFTSVLDW  978 (1513)
Q Consensus       965 ~~~l~~i~~~~l~~  978 (1513)
                      .+++..++...+..
T Consensus       195 ~~~~~~~l~~~~~~  208 (389)
T 1fnn_A          195 KDQIFDILLDRAKA  208 (389)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999887764

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.35  E-value=0.00046  Score=76.24  Aligned_cols=135  Identities=13%  Similarity=0.092  Sum_probs=76.1

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhc-ccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKS-ATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~-~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
                      +.++|+||+|+||||+++.+++.+..-..... ....+  ..+..+...  ...++++. ++....+ ...+..+++...
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~-~~~~~~~-~~~~~~~~~~~~  119 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC--DNCREIEQG--RFVDLIEI-DAASRTK-VEDTRDLLDNVQ  119 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCS--HHHHHHHTT--CCSSEEEE-ETTCGGG-HHHHHHHHHSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc--HHHHHHhcc--CCcceEEe-cCccccc-HHHHHHHHHHhh
Confidence            58999999999999999999887753110000 00000  000000000  00112221 1111111 112233444332


Q ss_pred             cc-CCCCceEEEEcCC--CChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeC
Q psy4730        1431 VS-TTPDRKWIMFDGP--IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1431 ~~-~~~~~~WivfDG~--~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
                      .. ....+..||+|..  +++...+.|-..+++.             ++++.+|+-+.+.....|+..+||-.+.+.+
T Consensus       120 ~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~  184 (250)
T 1njg_A          120 YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PEHVKFLLATTDPQKLPVTILSRCLQFHLKA  184 (250)
T ss_dssp             CSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC-------------CTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred             hchhcCCceEEEEECcccccHHHHHHHHHHHhcC-------------CCceEEEEEeCChHhCCHHHHHHhhhccCCC
Confidence            22 1335689999964  6777777777777542             5677888888887788899999998888876

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.33  E-value=0.00038  Score=79.18  Aligned_cols=44  Identities=14%  Similarity=0.194  Sum_probs=36.2

Q ss_pred             ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLD  977 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~  977 (1513)
                      ++.+++|+|.+. .+++.++|  ||. .++++.|+.++...|+..++.
T Consensus       151 ~v~vi~ttn~~~-~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~  197 (268)
T 2r62_A          151 PVIVLAATNRPE-ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK  197 (268)
T ss_dssp             CCEEEECBSCCT-TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred             CEEEEEecCCch-hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence            578889998873 48889988  884 589999999999999887654

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.33  E-value=0.002  Score=70.99  Aligned_cols=45  Identities=7%  Similarity=0.192  Sum_probs=36.4

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ++.++++++.+ ..+.+.+.+|+..+.+++|+.+++..++...+..
T Consensus       156 ~~~~i~~t~~~-~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~  200 (250)
T 1njg_A          156 HVKFLLATTDP-QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE  200 (250)
T ss_dssp             TEEEEEEESCG-GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCh-HhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHh
Confidence            56677777654 3578889999999999999999999999887653

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.33  E-value=0.00029  Score=81.70  Aligned_cols=133  Identities=12%  Similarity=0.164  Sum_probs=76.7

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
                      ..++++|+||||+|||++.+.+++.++              ..+..+++..+....+.|.   .    ..+.+..++...
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l~--------------~~~~~i~~~~~~~~~~~~~---~----~~~~~~~~~~~~  107 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLAN--------------APFIKVEATKFTEVGYVGK---E----VDSIIRDLTDSA  107 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHT--------------CCEEEEEGGGGSSCCSGGG---S----TTHHHHHHHHTT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhC--------------CCEEEEcchhcccCCccCc---c----HHHHHHHHHHHh
Confidence            356899999999999999999998874              2345566555443223331   1    112333332211


Q ss_pred             h--ccCCCCceEEEEcCC--CCh------------HHHHhhhcccCCCCceeecCCCeeecCCCCeEEEe----ecCCCC
Q psy4730        1430 A--VSTTPDRKWIMFDGP--IDA------------VWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFE----CENLEF 1489 (1513)
Q Consensus      1430 ~--~~~~~~~~WivfDG~--~d~------------~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE----~~~l~~ 1489 (1513)
                      .  .........+++|..  +.+            .+...|..+||+. .+...+|  ...++++.++.-    +.+...
T Consensus       108 ~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~-~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~  184 (310)
T 1ofh_A          108 GGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGS-TVSTKHG--MVKTDHILFIASGAFQVARPSD  184 (310)
T ss_dssp             TTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCC-EEEETTE--EEECTTCEEEEEECCSSSCGGG
T ss_pred             hHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCC-eEecccc--cccCCcEEEEEcCCcccCCccc
Confidence            0  000011368999931  111            1245566677754 3334445  234556777766    345667


Q ss_pred             CCcchhhccEE-EEeeCC
Q psy4730        1490 ASPATVSRVGM-IYFELK 1506 (1513)
Q Consensus      1490 asPatvsRcg~-v~~~~~ 1506 (1513)
                      ..|+..+||.+ |+|++-
T Consensus       185 l~~~l~~R~~~~i~~~~~  202 (310)
T 1ofh_A          185 LIPELQGRLPIRVELTAL  202 (310)
T ss_dssp             SCHHHHHTCCEEEECCCC
T ss_pred             CCHHHHhhCCceEEcCCc
Confidence            88999999975 777653

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.31  E-value=0.00031  Score=81.22  Aligned_cols=130  Identities=11%  Similarity=0.100  Sum_probs=73.7

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
                      ..|++|+||||||||++.+.+|+.++              ..+..+++     .++.+.+-    +-..+.+..+++.+.
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~l~--------------~~~i~v~~-----~~l~~~~~----g~~~~~i~~~f~~a~   92 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRKMG--------------INPIMMSA-----GELESGNA----GEPAKLIRQRYREAA   92 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHHHT--------------CCCEEEEH-----HHHHCC-------HHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC--------------CCEEEEeH-----HHhhhccC----chhHHHHHHHHHHHH
Confidence            35899999999999999999998884              23444443     33333221    112233444444442


Q ss_pred             cc-CCCCceEEEEcCC--------CCh-------HHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcch
Q psy4730        1431 VS-TTPDRKWIMFDGP--------IDA-------VWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPAT 1494 (1513)
Q Consensus      1431 ~~-~~~~~~WivfDG~--------~d~-------~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPat 1494 (1513)
                      .. .......|++|.-        -++       .+...|..+||+-....+.......-.+++.+|.-|.+.....||.
T Consensus        93 ~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al  172 (293)
T 3t15_A           93 EIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPL  172 (293)
T ss_dssp             HHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHH
T ss_pred             HHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHH
Confidence            10 1334577888842        011       3568888888866555555544455567889999998888898998


Q ss_pred             h--hccEEEEe
Q psy4730        1495 V--SRVGMIYF 1503 (1513)
Q Consensus      1495 v--sRcg~v~~ 1503 (1513)
                      .  +|+-.++.
T Consensus       173 ~R~~R~d~~i~  183 (293)
T 3t15_A          173 IRDGRMEKFYW  183 (293)
T ss_dssp             HHHHHEEEEEE
T ss_pred             hCCCCCceeEe
Confidence            8  47776443

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=97.28  E-value=0.00054  Score=79.99  Aligned_cols=44  Identities=9%  Similarity=0.227  Sum_probs=36.1

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLD  977 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~  977 (1513)
                      ++.++++++.+ ..+.+.+.+|+..+.+++|+.+++..++..++.
T Consensus       140 ~~~~i~~~~~~-~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~  183 (327)
T 1iqp_A          140 NVRFILSCNYS-SKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAE  183 (327)
T ss_dssp             TEEEEEEESCG-GGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCc-cccCHHHHhhCcEEEecCCCHHHHHHHHHHHHH
Confidence            45677777765 357899999999999999999999998887764

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.27  E-value=0.00075  Score=78.61  Aligned_cols=45  Identities=13%  Similarity=0.199  Sum_probs=36.9

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ++.++.+++++ ..+.+.+.+|+..+.+++|+.+++..++..++..
T Consensus       137 ~~~~il~~~~~-~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~  181 (323)
T 1sxj_B          137 STRFAFACNQS-NKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKL  181 (323)
T ss_dssp             TEEEEEEESCG-GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             CceEEEEeCCh-hhchhHHHhhceEEeecCCCHHHHHHHHHHHHHH
Confidence            45677777664 4678999999999999999999999999887643

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=97.26  E-value=0.00059  Score=79.25  Aligned_cols=135  Identities=16%  Similarity=0.194  Sum_probs=90.2

Q ss_pred             HHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCC-CC--CCcc
Q psy4730        1347 MILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSA-SH--EWRD 1419 (1513)
Q Consensus      1347 ~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~-t~--eW~D 1419 (1513)
                      +.....+|+|+||||+|||++.+.++....+.           ...+..+|+.+++    ..+|||+-... ++  .-..
T Consensus        21 ~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~-----------~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~   89 (304)
T 1ojl_A           21 VAPSDATVLIHGDSGTGKELVARALHACSARS-----------DRPLVTLNCAALNESLLESELFGHEKGAFTGADKRRE   89 (304)
T ss_dssp             HCSTTSCEEEESCTTSCHHHHHHHHHHHSSCS-----------SSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCC
T ss_pred             HhCCCCcEEEECCCCchHHHHHHHHHHhCccc-----------CCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhc
Confidence            34567899999999999999999998764321           1345678888876    46888863211 11  1234


Q ss_pred             CHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCC-------CCC
Q psy4730        1420 GILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL-------EFA 1490 (1513)
Q Consensus      1420 G~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l-------~~a 1490 (1513)
                      |.|..+          ....+++|  +.+++.....|-.+|++...  -+-|..-..+.++++|+-+..-       ...
T Consensus        90 g~~~~a----------~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~--~~~g~~~~~~~~~riI~atn~~l~~~v~~g~f  157 (304)
T 1ojl_A           90 GRFVEA----------DGGTLFLDEIGDISPLMQVRLLRAIQEREV--QRVGSNQTISVDVRLIAATHRDLAEEVSAGRF  157 (304)
T ss_dssp             CHHHHH----------TTSEEEEESCTTCCHHHHHHHHHHHHSSBC--CBTTBCCCCBCCCEEEEEESSCHHHHHHHTSS
T ss_pred             CHHHhc----------CCCEEEEeccccCCHHHHHHHHHHHhcCEe--eecCCcccccCCeEEEEecCccHHHHHHhCCc
Confidence            544322          12579999  67788888888999987654  2445566677889999988542       124


Q ss_pred             CcchhhccEEEEee
Q psy4730        1491 SPATVSRVGMIYFE 1504 (1513)
Q Consensus      1491 sPatvsRcg~v~~~ 1504 (1513)
                      .|...+|+..+.+.
T Consensus       158 r~~L~~Rl~~~~i~  171 (304)
T 1ojl_A          158 RQDLYYRLNVVAIE  171 (304)
T ss_dssp             CHHHHHHHSSEEEE
T ss_pred             HHHHHhhcCeeEEe
Confidence            57788898665543

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=97.26  E-value=0.00061  Score=79.78  Aligned_cols=114  Identities=17%  Similarity=0.209  Sum_probs=77.2

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
                      .+.+++.||||+|||++.+.+++.++              ..+..+|+.....                +.+...+.+.+
T Consensus        48 ~~~~L~~G~~G~GKT~la~~la~~l~--------------~~~~~i~~~~~~~----------------~~i~~~~~~~~   97 (324)
T 3u61_B           48 PHIILHSPSPGTGKTTVAKALCHDVN--------------ADMMFVNGSDCKI----------------DFVRGPLTNFA   97 (324)
T ss_dssp             CSEEEECSSTTSSHHHHHHHHHHHTT--------------EEEEEEETTTCCH----------------HHHHTHHHHHH
T ss_pred             CeEEEeeCcCCCCHHHHHHHHHHHhC--------------CCEEEEcccccCH----------------HHHHHHHHHHH
Confidence            46788888899999999999987764              3456666543221                11222233332


Q ss_pred             cc--CCCCceEEEEcC--CCC-hHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeC
Q psy4730        1431 VS--TTPDRKWIMFDG--PID-AVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1431 ~~--~~~~~~WivfDG--~~d-~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
                      ..  .....+-+++|.  .+. ....+.|..++++             .++++++|+-+.+.....|+..|||.++.|.+
T Consensus        98 ~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~-------------~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~  164 (324)
T 3u61_B           98 SAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEA-------------YSSNCSIIITANNIDGIIKPLQSRCRVITFGQ  164 (324)
T ss_dssp             HBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHH-------------HGGGCEEEEEESSGGGSCTTHHHHSEEEECCC
T ss_pred             hhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHh-------------CCCCcEEEEEeCCccccCHHHHhhCcEEEeCC
Confidence            22  123568999994  344 5566777777653             24678899988888889999999999998866


Q ss_pred             CC
Q psy4730        1506 KC 1507 (1513)
Q Consensus      1506 ~~ 1507 (1513)
                      -.
T Consensus       165 ~~  166 (324)
T 3u61_B          165 PT  166 (324)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.24  E-value=0.0003  Score=86.19  Aligned_cols=42  Identities=17%  Similarity=0.260  Sum_probs=33.1

Q ss_pred             EEEeecCC--CCCCChhhhccc---eEeecCCCChHHHHHHHHHHhh
Q psy4730         936 YITAMIPT--MNTITGRLLRHM---NIISIDSFNEATLSKIFTSVLD  977 (1513)
Q Consensus       936 ~~~a~~~~--~~~~~~r~~~~f---~~~~~~~~~~~~l~~i~~~~l~  977 (1513)
                      ++++.+|+  ...+.+|+++||   .++.+++|+.+++..|+...+.
T Consensus       231 Iitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~  277 (440)
T 2z4s_A          231 VICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLE  277 (440)
T ss_dssp             EEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence            34454444  345999999999   5899999999999999888764

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.21  E-value=0.00029  Score=91.25  Aligned_cols=46  Identities=17%  Similarity=0.148  Sum_probs=38.1

Q ss_pred             ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      ++.++||+|.+ ..|+|.++|  ||. .+.++.|+.+.-..|+..++..+
T Consensus       340 ~V~VIaaTN~~-d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~  388 (806)
T 3cf2_A          340 HVIVMAATNRP-NSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM  388 (806)
T ss_dssp             CEEEEEECSST-TTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSS
T ss_pred             CEEEEEecCCh-hhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCC
Confidence            57788998876 458999998  886 49999999999999998876543

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=97.20  E-value=0.00071  Score=78.63  Aligned_cols=117  Identities=19%  Similarity=0.212  Sum_probs=75.5

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc-
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV- 1431 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~- 1431 (1513)
                      +++|.||+|+|||++.+.+++.+..-..         ...+..+|+....     | .    ...     ...+++... 
T Consensus        40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~---------~~~~~~~~~~~~~-----~-~----~~~-----~~~~~~~~~~   95 (319)
T 2chq_A           40 HLLFSGPPGTGKTATAIALARDLFGENW---------RDNFIEMNASDER-----G-I----DVV-----RHKIKEFART   95 (319)
T ss_dssp             CEEEESSSSSSHHHHHHHHHHHHHTTCH---------HHHCEEEETTSTT-----C-T----TTS-----SHHHHHHHHS
T ss_pred             eEEEECcCCcCHHHHHHHHHHHhcCCcc---------cCCeEEEeCcccc-----C-h----HHH-----HHHHHHHHhc
Confidence            4999999999999999999988742110         1223445544311     1 0    011     122233221 


Q ss_pred             --cCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeCC
Q psy4730        1432 --STTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1432 --~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
                        -.......+|+|.  .+++.-.+.|..+++.             .++++.+|+-+.+.....|+..|||..+.|.+-
T Consensus        96 ~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~-------------~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~  161 (319)
T 2chq_A           96 APIGGAPFKIIFLDEADALTADAQAALRRTMEM-------------YSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPV  161 (319)
T ss_dssp             CCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS-------------SSSSEEEEEEESCGGGSCHHHHTTCEEEECCCC
T ss_pred             CCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh-------------cCCCCeEEEEeCChhhcchHHHhhCeEEEecCC
Confidence              1124578999995  3455556667666654             356788899888888888999999999988764

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=97.19  E-value=0.00016  Score=91.72  Aligned_cols=126  Identities=14%  Similarity=0.167  Sum_probs=87.2

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccC--CCCC--CccCHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDS--ASHE--WRDGILAKTFRE 1428 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~--~t~e--W~DG~l~~~lR~ 1428 (1513)
                      +|+|+||||+|||++.+.+++.+.+              ..+. .....+..++.|....  .+++  +..|.+..+   
T Consensus       329 ~vLL~GppGtGKT~LAr~la~~~~r--------------~~~~-~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A---  390 (595)
T 3f9v_A          329 HILIIGDPGTAKSQMLQFISRVAPR--------------AVYT-TGKGSTAAGLTAAVVREKGTGEYYLEAGALVLA---  390 (595)
T ss_dssp             CEEEEESSCCTHHHHHHSSSTTCSC--------------EECC-CTTCSTTTTSEEECSSGGGTSSCSEEECHHHHH---
T ss_pred             ceEEECCCchHHHHHHHHHHHhCCC--------------ceec-CCCccccccccceeeeccccccccccCCeeEec---
Confidence            8999999999999999998866532              0111 1111334444444321  1233  466776643   


Q ss_pred             hhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCC-------------CCCcc
Q psy4730        1429 MAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE-------------FASPA 1493 (1513)
Q Consensus      1429 ~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~-------------~asPa 1493 (1513)
                             ....+++|  +-+++...+.|..+|++...-....|....+|.++++|..+....             ..+||
T Consensus       391 -------~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~a  463 (595)
T 3f9v_A          391 -------DGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPT  463 (595)
T ss_dssp             -------SSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSS
T ss_pred             -------CCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHH
Confidence                   12688889  567888889999999876544345699999999999998886654             78999


Q ss_pred             hhhccEEEEe
Q psy4730        1494 TVSRVGMIYF 1503 (1513)
Q Consensus      1494 tvsRcg~v~~ 1503 (1513)
                      ..+|+.++++
T Consensus       464 Ll~RFDl~~~  473 (595)
T 3f9v_A          464 ILSRFDLIFI  473 (595)
T ss_dssp             SGGGCSCCEE
T ss_pred             HHhhCeEEEE
Confidence            9999976554

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=97.17  E-value=0.0015  Score=76.85  Aligned_cols=132  Identities=10%  Similarity=0.057  Sum_probs=76.8

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhh-cccccc---------cceeEEEecCCCCChhhccccccCCCCCCcc
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-SATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWRD 1419 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~-~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~D 1419 (1513)
                      ..|++++.||+|+|||++.+.+++++..-.... .++..+         ...++..++|..-            +.+-.-
T Consensus        23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~------------~~~~~i   90 (334)
T 1a5t_A           23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG------------KNTLGV   90 (334)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT------------CSSBCH
T ss_pred             cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc------------CCCCCH
Confidence            457899999999999999999999886321110 011110         1123444555310            011110


Q ss_pred             CHHHHHHHHhhccC-CCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhh
Q psy4730        1420 GILAKTFREMAVST-TPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVS 1496 (1513)
Q Consensus      1420 G~l~~~lR~~~~~~-~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvs 1496 (1513)
                      ..+-.+++.....+ ...++-+|+|.  .+...-.+.|-..|++             .|+++.+|+-+.+....-|+..|
T Consensus        91 ~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEe-------------p~~~~~~Il~t~~~~~l~~ti~S  157 (334)
T 1a5t_A           91 DAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEE-------------PPAETWFFLATREPERLLATLRS  157 (334)
T ss_dssp             HHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTS-------------CCTTEEEEEEESCGGGSCHHHHT
T ss_pred             HHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcC-------------CCCCeEEEEEeCChHhCcHHHhh
Confidence            11222333333222 24678999995  2233323333333332             25678999999999899999999


Q ss_pred             ccEEEEeeCC
Q psy4730        1497 RVGMIYFELK 1506 (1513)
Q Consensus      1497 Rcg~v~~~~~ 1506 (1513)
                      ||..+.|.+-
T Consensus       158 Rc~~~~~~~~  167 (334)
T 1a5t_A          158 RCRLHYLAPP  167 (334)
T ss_dssp             TSEEEECCCC
T ss_pred             cceeeeCCCC
Confidence            9999998763

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.17  E-value=0.00078  Score=76.07  Aligned_cols=46  Identities=17%  Similarity=0.200  Sum_probs=36.4

Q ss_pred             cceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhh
Q psy4730         932 VDIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       932 ~~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .++.+|+|+|++ ..++++++|  ||. .+.++.|+.+....|+..++..
T Consensus       149 ~~~~vI~~tn~~-~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~  197 (257)
T 1lv7_A          149 EGIIVIAATNRP-DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR  197 (257)
T ss_dssp             SCEEEEEEESCT-TTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred             CCEEEEEeeCCc-hhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc
Confidence            367889999987 468899988  775 5889999999888887776543

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=97.17  E-value=0.00087  Score=78.18  Aligned_cols=116  Identities=20%  Similarity=0.250  Sum_probs=73.6

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhcc
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVS 1432 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~~ 1432 (1513)
                      +++|.||+|+|||++.+.+++.+..-..         ...+..+++....     |         .+ .+...+++....
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~---------~~~~~~~~~~~~~-----~---------~~-~~~~~~~~~~~~  103 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALARELFGENW---------RHNFLELNASDER-----G---------IN-VIREKVKEFART  103 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHGGGH---------HHHEEEEETTCHH-----H---------HH-TTHHHHHHHHHS
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhcCCcc---------cCceEEeeccccC-----c---------hH-HHHHHHHHHHhh
Confidence            5999999999999999999988753110         1223445543211     1         00 011122222211


Q ss_pred             C---CCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeC
Q psy4730        1433 T---TPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1433 ~---~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
                      .   .....-+|+|.  .+++...+.|..++++.             ++++++++-+.+.....|+..|||..+.|.+
T Consensus       104 ~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~  168 (327)
T 1iqp_A          104 KPIGGASFKIIFLDEADALTQDAQQALRRTMEMF-------------SSNVRFILSCNYSSKIIEPIQSRCAIFRFRP  168 (327)
T ss_dssp             CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGGGSCHHHHHTEEEEECCC
T ss_pred             CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhc-------------CCCCeEEEEeCCccccCHHHHhhCcEEEecC
Confidence            1   14568999995  34555566666666542             4577888888888888899999999998876

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.16  E-value=0.00039  Score=82.94  Aligned_cols=28  Identities=11%  Similarity=0.440  Sum_probs=24.9

Q ss_pred             CChhhhccceEee-cCCCChHHHHHHHHH
Q psy4730         947 ITGRLLRHMNIIS-IDSFNEATLSKIFTS  974 (1513)
Q Consensus       947 ~~~r~~~~f~~~~-~~~~~~~~l~~i~~~  974 (1513)
                      +.|.|++||.++. +.+|+.+.+..|...
T Consensus       239 ~~~~l~~R~~~~~~~~pl~~~~~~~I~~~  267 (363)
T 3hws_A          239 LIPEFIGRLPVVATLNELSEEALIQILKE  267 (363)
T ss_dssp             CCHHHHTTCCEEEECCCCCHHHHHHHHHS
T ss_pred             CCHHHhcccCeeeecCCCCHHHHHHHHHH
Confidence            7899999999966 789999999999886

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.16  E-value=0.0011  Score=79.13  Aligned_cols=64  Identities=11%  Similarity=0.065  Sum_probs=39.4

Q ss_pred             ceEEEEc--CCCChHHHHhhhcccCCCCc--eeecCCCeeecCCCCeEEEeec--CCCCCCcchhhccEEEEeeCC
Q psy4730        1437 RKWIMFD--GPIDAVWIENMNTVLDDNKK--LCLINGEIIKMSNTMNLIFECE--NLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1437 ~~WivfD--G~~d~~wiE~LNsvLDdn~~--L~L~nGe~i~~~~~~~~iFE~~--~l~~asPatvsRcg~v~~~~~ 1506 (1513)
                      +.-+++|  ..+++.-.+.|+.++++...  +.+..      .+.++++..++  ......|+..|||..+.+.+-
T Consensus       190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~~ii~t------~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~  259 (368)
T 3uk6_A          190 PGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMAT------NRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPY  259 (368)
T ss_dssp             BCEEEEESGGGSBHHHHHHHHHHTTCTTCCEEEEEE------SCSEEECBTSSCEEETTCCHHHHTTEEEEEECCC
T ss_pred             CceEEEhhccccChHHHHHHHHHhhCcCCCeeeeec------ccceeeeeccCCCCcccCCHHHHhhccEEEecCC
Confidence            3589999  45677778888888877532  11111      11122222221  234567999999999988764

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.14  E-value=0.0014  Score=77.54  Aligned_cols=44  Identities=5%  Similarity=0.000  Sum_probs=35.8

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLD  977 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~  977 (1513)
                      +..++.+++++. .+.+++.+|+..+.+.+|+.+++..+...++.
T Consensus       163 ~~~~il~~~~~~-~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~  206 (353)
T 1sxj_D          163 VTRFCLICNYVT-RIIDPLASQCSKFRFKALDASNAIDRLRFISE  206 (353)
T ss_dssp             TEEEEEEESCGG-GSCHHHHHHSEEEECCCCCHHHHHHHHHHHHH
T ss_pred             CceEEEEeCchh-hCcchhhccCceEEeCCCCHHHHHHHHHHHHH
Confidence            455666776653 48899999999999999999999998888764

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.11  E-value=0.0018  Score=79.79  Aligned_cols=123  Identities=19%  Similarity=0.178  Sum_probs=67.3

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHH
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFRE 1428 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~ 1428 (1513)
                      ...++++|+||||+|||++.+.++..+..-.   . +..-....+..++..        |.+   .++|.+ -+..++..
T Consensus       199 ~~~~~~LL~G~pG~GKT~la~~la~~l~~~~---~-p~~l~~~~~~~l~~~--------~~~---~g~~e~-~~~~~~~~  262 (468)
T 3pxg_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNE---V-PEILRDKRVMTLDMG--------TKY---RGEFED-RLKKVMDE  262 (468)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHHHSSC---S-CTTTSSCCEECC---------------------CT-THHHHHHH
T ss_pred             cCCCCeEEECCCCCCHHHHHHHHHHHHHhCC---C-ChhhcCCeEEEeeCC--------ccc---cchHHH-HHHHHHHH
Confidence            3456899999999999999999998875310   0 000012334444443        222   123332 23444544


Q ss_pred             hhccCCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCC-----CCCcchhhccEEEEe
Q psy4730        1429 MAVSTTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE-----FASPATVSRVGMIYF 1503 (1513)
Q Consensus      1429 ~~~~~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~-----~asPatvsRcg~v~~ 1503 (1513)
                      ...   ....-+++||..|.  ...|..+|+.        |       .+++|..|+.-.     ...||..+||..|.+
T Consensus       263 ~~~---~~~~iLfiD~~~~a--~~~L~~~L~~--------g-------~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v  322 (468)
T 3pxg_A          263 IRQ---AGNIILFIDAAIDA--SNILKPSLAR--------G-------ELQCIGATTLDEYRKYIEKDAALERRFQPIQV  322 (468)
T ss_dssp             HHT---CCCCEEEECC----------CCCTTS--------S-------SCEEEEECCTTTTHHHHTTCSHHHHSEEEEEC
T ss_pred             HHh---cCCeEEEEeCchhH--HHHHHHhhcC--------C-------CEEEEecCCHHHHHHHhhcCHHHHHhCcccee
Confidence            432   23467888976654  3445555542        2       577888776665     477999999999998


Q ss_pred             eCCC
Q psy4730        1504 ELKC 1507 (1513)
Q Consensus      1504 ~~~~ 1507 (1513)
                      ++-.
T Consensus       323 ~~p~  326 (468)
T 3pxg_A          323 DQPS  326 (468)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            7653

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=97.10  E-value=0.0013  Score=81.44  Aligned_cols=46  Identities=15%  Similarity=0.117  Sum_probs=38.2

Q ss_pred             cceEEEEeecCCCCCCChhhhc--cceE-eecCCCChHHHHHHHHHHhhh
Q psy4730         932 VDIIYITAMIPTMNTITGRLLR--HMNI-ISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       932 ~~~~~~~a~~~~~~~~~~r~~~--~f~~-~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .++.++||+|++. .+++.++|  ||.. ++++.|+.+....|+...+..
T Consensus       339 ~~v~vIaaTn~~~-~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~  387 (489)
T 3hu3_A          339 AHVIVMAATNRPN-SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN  387 (489)
T ss_dssp             SCEEEEEEESCGG-GBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTT
T ss_pred             CceEEEEecCCcc-ccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhc
Confidence            3789999999873 48899988  7854 999999999999999887654

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.10  E-value=0.00032  Score=80.47  Aligned_cols=123  Identities=15%  Similarity=0.165  Sum_probs=72.1

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHH
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFRE 1428 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~ 1428 (1513)
                      ...++++|+||||||||++.+.+++.++              ..+..+++     .++++.+..    -..+.+..+++.
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~~--------------~~~~~v~~-----~~~~~~~~~----~~~~~~~~~~~~  105 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATETN--------------ATFIRVVG-----SELVKKFIG----EGASLVKDIFKL  105 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHTT--------------CEEEEEEG-----GGGCCCSTT----HHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhC--------------CCEEEEeh-----HHHHHhccc----hHHHHHHHHHHH
Confidence            3457999999999999999999987753              23444443     334333211    111222233333


Q ss_pred             hhccCCCCceEEEEcCC-------------CChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchh
Q psy4730        1429 MAVSTTPDRKWIMFDGP-------------IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATV 1495 (1513)
Q Consensus      1429 ~~~~~~~~~~WivfDG~-------------~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatv 1495 (1513)
                      +..   .....+++|.-             .+..+.+.++.+|+.-        +.+..++++.+|.-+.......|+..
T Consensus       106 ~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~--------~~~~~~~~~~vI~ttn~~~~l~~~l~  174 (285)
T 3h4m_A          106 AKE---KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEM--------DGFDARGDVKIIGATNRPDILDPAIL  174 (285)
T ss_dssp             HHH---TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHH--------HTTCSSSSEEEEEECSCGGGBCHHHH
T ss_pred             HHH---cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHh--------hCCCCCCCEEEEEeCCCchhcCHHHc
Confidence            221   23468999941             1344556666665321        01122346778888877888889988


Q ss_pred             h--ccE-EEEeeC
Q psy4730        1496 S--RVG-MIYFEL 1505 (1513)
Q Consensus      1496 s--Rcg-~v~~~~ 1505 (1513)
                      +  |+. .+++++
T Consensus       175 ~~~Rf~~~i~~~~  187 (285)
T 3h4m_A          175 RPGRFDRIIEVPA  187 (285)
T ss_dssp             STTSEEEEEECCC
T ss_pred             CCCcCCeEEEECC
Confidence            8  887 445544

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.09  E-value=0.0011  Score=77.26  Aligned_cols=116  Identities=17%  Similarity=0.238  Sum_probs=72.9

Q ss_pred             EEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc--
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV-- 1431 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~-- 1431 (1513)
                      ++|+||+|+|||++.+.+++.+..-..         ...+..+|+....     |          -+.+..+++....  
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~l~~~~~---------~~~~~~~~~~~~~-----~----------~~~i~~~~~~~~~~~  100 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHELLGRSY---------ADGVLELNASDDR-----G----------IDVVRNQIKHFAQKK  100 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHGGGH---------HHHEEEECTTSCC-----S----------HHHHHTHHHHHHHBC
T ss_pred             EEEECcCCCCHHHHHHHHHHHhcCCcc---------cCCEEEecCcccc-----C----------hHHHHHHHHHHHhcc
Confidence            999999999999999999988743110         1223444443210     0          0112222333221  


Q ss_pred             cC--CCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeCC
Q psy4730        1432 ST--TPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1432 ~~--~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
                      ..  ...++.||+|.  .++..-.+.|-.++++             .++++.+++-+.+.....|+..|||..+.|.+-
T Consensus       101 ~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~-------------~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~  166 (323)
T 1sxj_B          101 LHLPPGKHKIVILDEADSMTAGAQQALRRTMEL-------------YSNSTRFAFACNQSNKIIEPLQSQCAILRYSKL  166 (323)
T ss_dssp             CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHH-------------TTTTEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred             ccCCCCCceEEEEECcccCCHHHHHHHHHHHhc-------------cCCCceEEEEeCChhhchhHHHhhceEEeecCC
Confidence            11  23478999995  2444445556555543             246788888888888888999999999988764

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.08  E-value=0.0014  Score=77.44  Aligned_cols=122  Identities=16%  Similarity=0.173  Sum_probs=75.5

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh-
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA- 1430 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~- 1430 (1513)
                      ..++|+||||+||||+.+.+++.+..-...        ...+..+||......+.          +.+ .+.. +.... 
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~--------~~~~~~~~~~~~~~~~~----------~~~-~~~~-~~~~~~  118 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTKELYGPDLM--------KSRILELNASDERGISI----------VRE-KVKN-FARLTV  118 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHHHHHHH--------TTSEEEECSSSCCCHHH----------HTT-HHHH-HHHSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCCccc--------ccceEEEccccccchHH----------HHH-HHHH-Hhhhcc
Confidence            349999999999999999999987631111        13445566654321100          000 0000 11100 


Q ss_pred             ---------ccCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccE
Q psy4730        1431 ---------VSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVG 1499 (1513)
Q Consensus      1431 ---------~~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg 1499 (1513)
                               ........-+++|.  .+++...+.|..++++.             +++.++++-+.+.....|+..+||.
T Consensus       119 ~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~-------------~~~~~~il~~~~~~~l~~~l~sR~~  185 (353)
T 1sxj_D          119 SKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETY-------------SGVTRFCLICNYVTRIIDPLASQCS  185 (353)
T ss_dssp             CCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGGGSCHHHHHHSE
T ss_pred             cccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhc-------------CCCceEEEEeCchhhCcchhhccCc
Confidence                     01123457899995  35666666777776643             2467788888888888999999999


Q ss_pred             EEEeeCC
Q psy4730        1500 MIYFELK 1506 (1513)
Q Consensus      1500 ~v~~~~~ 1506 (1513)
                      .+.+.+-
T Consensus       186 ~i~~~~~  192 (353)
T 1sxj_D          186 KFRFKAL  192 (353)
T ss_dssp             EEECCCC
T ss_pred             eEEeCCC
Confidence            8887653

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=97.07  E-value=0.00099  Score=81.52  Aligned_cols=111  Identities=15%  Similarity=0.176  Sum_probs=65.3

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
                      ++++|+|||||||||+.+.+++.++              .....++......+++            .+++..+..... 
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~--------------~~f~~l~a~~~~~~~i------------r~~~~~a~~~~~-  103 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYAN--------------ADVERISAVTSGVKEI------------REAIERARQNRN-  103 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTT--------------CEEEEEETTTCCHHHH------------HHHHHHHHHHHH-
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhC--------------CCeEEEEeccCCHHHH------------HHHHHHHHHhhh-
Confidence            4799999999999999999998764              2344455433222221            122222222111 


Q ss_pred             cCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeec-CC-CCCCcchhhccEEEEeeCC
Q psy4730        1432 STTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE-NL-EFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1432 ~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~-~l-~~asPatvsRcg~v~~~~~ 1506 (1513)
                        ......+++|.  .+...-.+.|..+|++.               .+.+|+.|+ +. ....|+..|||.++.+.+-
T Consensus       104 --~~~~~iLfIDEI~~l~~~~q~~LL~~le~~---------------~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l  165 (447)
T 3pvs_A          104 --AGRRTILFVDEVHRFNKSQQDAFLPHIEDG---------------TITFIGATTENPSFELNSALLSRARVYLLKSL  165 (447)
T ss_dssp             --TTCCEEEEEETTTCC------CCHHHHHTT---------------SCEEEEEESSCGGGSSCHHHHTTEEEEECCCC
T ss_pred             --cCCCcEEEEeChhhhCHHHHHHHHHHHhcC---------------ceEEEecCCCCcccccCHHHhCceeEEeeCCc
Confidence              23568899993  44444455666666542               256666663 33 2567999999999887763

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.04  E-value=0.00096  Score=68.39  Aligned_cols=38  Identities=18%  Similarity=0.112  Sum_probs=30.5

Q ss_pred             hhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhcc
Q psy4730         716 CMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       716 ~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      .+....+..+...+.||||.||||||||++++.+....
T Consensus        11 ~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           11 NQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             HHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            34445556667889999999999999999999887654

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.02  E-value=0.00049  Score=82.53  Aligned_cols=94  Identities=19%  Similarity=0.298  Sum_probs=53.2

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
                      .++++|+||||||||++.+.+++.++              ..+..++...++...++|.-       ..+.+..+++...
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~--------------~~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~  130 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLD--------------IPIAISDATSLTEAGYVGED-------VENILTRLLQASD  130 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT--------------CCEEEEEGGGCC---------------CTHHHHHHHHHTT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhC--------------CCEEEecchhhhhcCcCCcc-------HHHHHHHHHhhcc
Confidence            56899999999999999999998763              23456666666555555531       1345555544321


Q ss_pred             cc-CCCCceEEEEcC--CCChH--------------HHHhhhcccCCCCceee
Q psy4730        1431 VS-TTPDRKWIMFDG--PIDAV--------------WIENMNTVLDDNKKLCL 1466 (1513)
Q Consensus      1431 ~~-~~~~~~WivfDG--~~d~~--------------wiE~LNsvLDdn~~L~L 1466 (1513)
                      .. .......+++|.  .+.+.              ..+.|..+||+ +.+.+
T Consensus       131 ~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~-~~~~~  182 (376)
T 1um8_A          131 WNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEG-SLVNI  182 (376)
T ss_dssp             TCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHC-CEEC-
T ss_pred             chhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhc-cceec
Confidence            00 011346888883  33333              67888888884 34333

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=97.02  E-value=0.0018  Score=77.13  Aligned_cols=138  Identities=13%  Similarity=0.097  Sum_probs=77.5

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhh-cccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-SATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFRE 1428 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~-~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~ 1428 (1513)
                      ..|+++|.||+|+||||+.+.+++.++.-.... ..+..+.  .+..+....  ..++++ +++......+ .+..++..
T Consensus        37 ~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~-~~~~~~~~~~-~~~~l~~~  110 (373)
T 1jr3_A           37 IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD--NCREIEQGR--FVDLIE-IDAASRTKVE-DTRDLLDN  110 (373)
T ss_dssp             CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSH--HHHHHHTSC--CSSCEE-EETTCSCCSS-CHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH--HHHHHhccC--CCceEE-ecccccCCHH-HHHHHHHH
Confidence            346899999999999999999998875311100 0000000  000000000  001111 1111111112 23344444


Q ss_pred             hhccC-CCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeC
Q psy4730        1429 MAVST-TPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1429 ~~~~~-~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
                      ....+ ......+|+|.  .+++...+.|-..|++             .|+++.+|+-+.+.....|+..|||..+.+.+
T Consensus       111 ~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~-------------~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~  177 (373)
T 1jr3_A          111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-------------PPEHVKFLLATTDPQKLPVTILSRCLQFHLKA  177 (373)
T ss_dssp             TTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS-------------CCSSEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred             HhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc-------------CCCceEEEEEeCChHhCcHHHHhheeEeeCCC
Confidence            43322 34568999995  3455555666555543             36678899999888888899999999888876


Q ss_pred             C
Q psy4730        1506 K 1506 (1513)
Q Consensus      1506 ~ 1506 (1513)
                      -
T Consensus       178 l  178 (373)
T 1jr3_A          178 L  178 (373)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.01  E-value=0.016  Score=71.53  Aligned_cols=44  Identities=20%  Similarity=0.206  Sum_probs=35.4

Q ss_pred             ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLD  977 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~  977 (1513)
                      .+.++|++|.|.. +++.++|  ||. .+.++.|+.+....|+...+.
T Consensus       169 ~viviAatn~p~~-LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~  215 (499)
T 2dhr_A          169 AIVVMAATNRPDI-LDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR  215 (499)
T ss_dssp             CCEEEECCSCGGG-SCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS
T ss_pred             cEEEEEecCChhh-cCcccccccccceEEecCCCCHHHHHHHHHHHHh
Confidence            5678889988854 8999998  564 689999999999999876554

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=97.00  E-value=0.00092  Score=77.67  Aligned_cols=44  Identities=7%  Similarity=0.135  Sum_probs=36.7

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLD  977 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~  977 (1513)
                      ++.++++++.+ ..+.+.+.+|+..+.+.+|+.+++..+...++.
T Consensus       132 ~~~~i~~~~~~-~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~  175 (319)
T 2chq_A          132 SCRFILSCNYV-SRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICE  175 (319)
T ss_dssp             SEEEEEEESCG-GGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCh-hhcchHHHhhCeEEEecCCCHHHHHHHHHHHHH
Confidence            56778887764 368899999999999999999999988887754

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.00  E-value=0.00044  Score=73.42  Aligned_cols=129  Identities=13%  Similarity=0.102  Sum_probs=69.1

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
                      ..+++|+||+|+|||++++.+++.+......    .......+..++.     .++..... ..++| ...+..+++...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~-----~~~~~~~~-~~~~~-~~~~~~~~~~~~  111 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVP----EGLKGRRVLALDM-----GALVAGAK-YRGEF-EERLKGVLNDLA  111 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHHHHTCSC----GGGTTCEEEEECH-----HHHHTTTC-SHHHH-HHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHHhCCCc----hhhcCCcEEEeeH-----HHHhccCC-ccccH-HHHHHHHHHHHh
Confidence            4689999999999999999999887541100    0000123333332     22221000 00001 011222333221


Q ss_pred             ccCCCCceEEEEcC--CC--------ChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCC-----CCCcchh
Q psy4730        1431 VSTTPDRKWIMFDG--PI--------DAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE-----FASPATV 1495 (1513)
Q Consensus      1431 ~~~~~~~~WivfDG--~~--------d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~-----~asPatv 1495 (1513)
                      .  ......+++|.  .+        +....+.|+.+++.               .++.+|+.+.+..     ...|+..
T Consensus       112 ~--~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~i~~~~~~~~~~~~~~~~~l~  174 (195)
T 1jbk_A          112 K--QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR---------------GELHCVGATTLDEYRQYIEKDAALE  174 (195)
T ss_dssp             H--STTTEEEEEETGGGGTT------CCCCHHHHHHHHHT---------------TSCCEEEEECHHHHHHHTTTCHHHH
T ss_pred             h--cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc---------------CCeEEEEeCCHHHHHHHHhcCHHHH
Confidence            1  23356899995  11        12224444444432               3567788776654     5689999


Q ss_pred             hccEEEEeeCCC
Q psy4730        1496 SRVGMIYFELKC 1507 (1513)
Q Consensus      1496 sRcg~v~~~~~~ 1507 (1513)
                      +||..|++.+-.
T Consensus       175 ~r~~~i~~~~p~  186 (195)
T 1jbk_A          175 RRFQKVFVAEPS  186 (195)
T ss_dssp             TTEEEEECCCCC
T ss_pred             HHhceeecCCCC
Confidence            999988887643

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.94  E-value=0.00047  Score=73.02  Aligned_cols=128  Identities=13%  Similarity=0.057  Sum_probs=67.2

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
                      .++|+|+||+|+|||++.+.+++.+..-...    .......+..++.     .++..... ..+.| ...+..+++...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~~~~~~~----~~~~~~~~~~~~~-----~~~~~~~~-~~~~~-~~~~~~~~~~~~  111 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKIVQGDVP----DSLKGRKLVSLDL-----SSLIAGAK-YRGDF-EERLKSILKEVQ  111 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHHHTTCSC----TTTTTCEEEEECH-----HHHHHHCC-SHHHH-HHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHHhcCCc----chhcCCeEEEEeH-----HHhhcCCC-chhHH-HHHHHHHHHHHH
Confidence            5689999999999999999999887531100    0000122333332     22211000 00011 112233333332


Q ss_pred             ccCCCCceEEEEcC--CCC---------hHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCC-----CCCCcch
Q psy4730        1431 VSTTPDRKWIMFDG--PID---------AVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL-----EFASPAT 1494 (1513)
Q Consensus      1431 ~~~~~~~~WivfDG--~~d---------~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l-----~~asPat 1494 (1513)
                      .  ......+++|.  .+.         ....+.|..++++               .++.+|+.+..-     ....|+.
T Consensus       112 ~--~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~ii~~~~~~~~~~~~~~~~~l  174 (187)
T 2p65_A          112 D--AEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR---------------GELRCIGATTVSEYRQFIEKDKAL  174 (187)
T ss_dssp             H--TTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT---------------TCSCEEEEECHHHHHHHTTTCHHH
T ss_pred             h--cCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc---------------CCeeEEEecCHHHHHHHHhccHHH
Confidence            2  12346899994  111         2233334444432               356677766543     2568999


Q ss_pred             hhccEEEEeeCC
Q psy4730        1495 VSRVGMIYFELK 1506 (1513)
Q Consensus      1495 vsRcg~v~~~~~ 1506 (1513)
                      .+||..|++.+-
T Consensus       175 ~~R~~~i~i~~p  186 (187)
T 2p65_A          175 ERRFQQILVEQP  186 (187)
T ss_dssp             HHHEEEEECCSC
T ss_pred             HHhcCcccCCCC
Confidence            999999988753

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.92  E-value=0.0022  Score=76.52  Aligned_cols=48  Identities=19%  Similarity=0.296  Sum_probs=38.4

Q ss_pred             ceEEEEeecCC--CCCCChhhhccc--eEeecCCCChHHHHHHHHHHhhhhh
Q psy4730         933 DIIYITAMIPT--MNTITGRLLRHM--NIISIDSFNEATLSKIFTSVLDWHF  980 (1513)
Q Consensus       933 ~~~~~~a~~~~--~~~~~~r~~~~f--~~~~~~~~~~~~l~~i~~~~l~~~~  980 (1513)
                      ++.+|++++.+  ...+.+++.++|  ..+.+++|+.+++..|+...+...+
T Consensus       163 ~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~  214 (386)
T 2qby_A          163 KISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF  214 (386)
T ss_dssp             -EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB
T ss_pred             eEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc
Confidence            56778887765  356889999999  6899999999999999998776433

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.89  E-value=0.00029  Score=84.12  Aligned_cols=96  Identities=17%  Similarity=0.264  Sum_probs=58.5

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
                      ...+|+|+||||||||++.+.+++.++              ..+..+++..+...+++|.-       ..|.+..+++..
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~--------------~~~~~~~~~~l~~~~~~g~~-------~~~~~~~~~~~~  108 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLD--------------VPFTMADATTLTEAGYVGED-------VENIIQKLLQKC  108 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTT--------------CCEEEEEHHHHTTCHHHHHH-------HTHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcC--------------CCEEEechHHhccccccccc-------HHHHHHHHHHHh
Confidence            356899999999999999999998874              34566676666555666642       134555555543


Q ss_pred             hcc-CCCCceEEEEcC--CCChH--------------HHHhhhcccCCCCceeec
Q psy4730        1430 AVS-TTPDRKWIMFDG--PIDAV--------------WIENMNTVLDDNKKLCLI 1467 (1513)
Q Consensus      1430 ~~~-~~~~~~WivfDG--~~d~~--------------wiE~LNsvLDdn~~L~L~ 1467 (1513)
                      ... ......-+++|.  .+.+.              ....|-.+|| .....++
T Consensus       109 ~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~le-g~~~~~~  162 (363)
T 3hws_A          109 DYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIE-GTVAAVP  162 (363)
T ss_dssp             TTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHH-CC-----
T ss_pred             hhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhc-Cceeecc
Confidence            100 001235788993  12222              7888888998 5555554

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.89  E-value=0.0007  Score=86.37  Aligned_cols=146  Identities=15%  Similarity=0.179  Sum_probs=89.5

Q ss_pred             HHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcc----ccccc------------------------------
Q psy4730        1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSA----TMKEF------------------------------ 1389 (1513)
Q Consensus      1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~----~~~~~------------------------------ 1389 (1513)
                      +..++...+.++|+|||||||||+.+.++..+..-......    .....                              
T Consensus        53 l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r  132 (604)
T 3k1j_A           53 IKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREKAKSQESVK  132 (604)
T ss_dssp             HHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-
T ss_pred             ccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHHhhccchhhh
Confidence            44456677899999999999999999999876421100000    00000                              


Q ss_pred             -----------ceeEE----------EecCCCCChhhccccccCCC---CCC--------ccCHHHHHHHHhhccCCCCc
Q psy4730        1390 -----------KTGYK----------IINPKSITMGQLYGEFDSAS---HEW--------RDGILAKTFREMAVSTTPDR 1437 (1513)
Q Consensus      1390 -----------~~~~~----------~inp~~~t~~eL~G~~~~~t---~eW--------~DG~l~~~lR~~~~~~~~~~ 1437 (1513)
                                 ..+..          .+.....+..+|||.++...   +.+        ..|.+..+          ..
T Consensus       133 ~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g~~~~a----------~~  202 (604)
T 3k1j_A          133 SSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAHERVEPGMIHRA----------HK  202 (604)
T ss_dssp             ----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGGGGEECCHHHHT----------TT
T ss_pred             hhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccccccccccCceeeec----------CC
Confidence                       00000          12223556788999875322   112        33433321          23


Q ss_pred             eEEEEc--CCCChHHHHhhhcccCCCCceeecCCC--------eeecCCCCeEEEeecCC--CCCCcchhhccE
Q psy4730        1438 KWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGE--------IIKMSNTMNLIFECENL--EFASPATVSRVG 1499 (1513)
Q Consensus      1438 ~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe--------~i~~~~~~~~iFE~~~l--~~asPatvsRcg 1499 (1513)
                      .++++|  +.+++..-+.|..+|++...-....++        .-.+|.++++|+-+..-  ....|+..+||.
T Consensus       203 gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~~l~~R~~  276 (604)
T 3k1j_A          203 GVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALRSRIR  276 (604)
T ss_dssp             SEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCHHHHHHHH
T ss_pred             CEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCHHHHHHhh
Confidence            699999  567888889999999765433222222        34567789999988643  578999999995

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.88  E-value=0.0019  Score=74.51  Aligned_cols=45  Identities=16%  Similarity=0.201  Sum_probs=37.4

Q ss_pred             ceEEEEeecCCCCCCChhhhccc-eEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHM-NIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f-~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+.+++|+|.+. .+++.++||| ..++++.|+.+....|+..++..
T Consensus       159 ~v~vi~~tn~~~-~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~  204 (297)
T 3b9p_A          159 RIVVLAATNRPQ-ELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQK  204 (297)
T ss_dssp             CEEEEEEESCGG-GBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGG
T ss_pred             cEEEEeecCChh-hCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHh
Confidence            477888888774 6889999999 57999999999999988877654

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.88  E-value=0.0012  Score=78.89  Aligned_cols=131  Identities=15%  Similarity=0.273  Sum_probs=72.1

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhccccccc-ceeEEEecCCCCC----------hhhccccccCCCCCCc-
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEF-KTGYKIINPKSIT----------MGQLYGEFDSASHEWR- 1418 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~-~~~~~~inp~~~t----------~~eL~G~~~~~t~eW~- 1418 (1513)
                      .++|+|.||+|+|||++++.+++.+..-....    ... ...+..+|+....          ..++.|.--+ ..... 
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~  119 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKED----EEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVP-KHGINL  119 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHS----SSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCC-SSSSCT
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhh----cCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCC-CCCCCH
Confidence            35799999999999999999998875421100    000 2345556644433          3344443111 11222 


Q ss_pred             cCHHHHHHHHhhccCCCCceEEEEcCCCChH----HHHh-hhcccCCCCceeecCCCeeecCCCCeEEEeecCC---CCC
Q psy4730        1419 DGILAKTFREMAVSTTPDRKWIMFDGPIDAV----WIEN-MNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL---EFA 1490 (1513)
Q Consensus      1419 DG~l~~~lR~~~~~~~~~~~WivfDG~~d~~----wiE~-LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l---~~a 1490 (1513)
                      +.++..+.....    .....|++|. +|..    +.+. +..+++-.              +++.+|+-+.+.   ...
T Consensus       120 ~~~~~~l~~~l~----~~~~vlilDE-i~~l~~~~~~~~~l~~l~~~~--------------~~~~iI~~t~~~~~~~~l  180 (384)
T 2qby_B          120 GEYIDKIKNGTR----NIRAIIYLDE-VDTLVKRRGGDIVLYQLLRSD--------------ANISVIMISNDINVRDYM  180 (384)
T ss_dssp             HHHHHHHHHHHS----SSCEEEEEET-THHHHHSTTSHHHHHHHHTSS--------------SCEEEEEECSSTTTTTTS
T ss_pred             HHHHHHHHHHhc----cCCCEEEEEC-HHHhccCCCCceeHHHHhcCC--------------cceEEEEEECCCchHhhh
Confidence            233333333221    1123899995 2111    1233 44444321              677888887766   567


Q ss_pred             Ccchhhcc-EEEEeeC
Q psy4730        1491 SPATVSRV-GMIYFEL 1505 (1513)
Q Consensus      1491 sPatvsRc-g~v~~~~ 1505 (1513)
                      .|+..+|+ ..+.+.|
T Consensus       181 ~~~l~sr~~~~i~l~~  196 (384)
T 2qby_B          181 EPRVLSSLGPSVIFKP  196 (384)
T ss_dssp             CHHHHHTCCCEEEECC
T ss_pred             CHHHHhcCCCeEEECC
Confidence            88989994 5777765

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.85  E-value=0.0014  Score=80.33  Aligned_cols=45  Identities=22%  Similarity=0.228  Sum_probs=36.3

Q ss_pred             cceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhh
Q psy4730         932 VDIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLD  977 (1513)
Q Consensus       932 ~~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~  977 (1513)
                      .++.+++|+|.+ ..++|.++|  ||. .+.++.|+.+....|+..++.
T Consensus       153 ~~viVIaaTn~~-~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~  200 (476)
T 2ce7_A          153 EGIIVMAATNRP-DILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTR  200 (476)
T ss_dssp             GTEEEEEEESCG-GGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred             CCEEEEEecCCh-hhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHH
Confidence            368899999987 357888887  887 689999999988888876554

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.82  E-value=0.0017  Score=77.74  Aligned_cols=29  Identities=14%  Similarity=0.314  Sum_probs=24.7

Q ss_pred             CCChhhhccc-eEeecCCCChHHHHHHHHH
Q psy4730         946 TITGRLLRHM-NIISIDSFNEATLSKIFTS  974 (1513)
Q Consensus       946 ~~~~r~~~~f-~~~~~~~~~~~~l~~i~~~  974 (1513)
                      .+.|.|++|+ .++.+++++.+++..|...
T Consensus       255 ~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~  284 (376)
T 1um8_A          255 GLIPELIGRLPVLSTLDSISLEAMVDILQK  284 (376)
T ss_dssp             TCCHHHHTTCCEEEECCCCCHHHHHHHHHS
T ss_pred             CCChHHhcCCCceeeccCCCHHHHHHHHhh
Confidence            4678899999 7789999999999998873

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.77  E-value=0.0049  Score=72.62  Aligned_cols=44  Identities=11%  Similarity=0.179  Sum_probs=35.4

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLD  977 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~  977 (1513)
                      ...++.++|++ ..+.|.+.+|+..+.+.+++.+++..+...++.
T Consensus       140 ~~~~il~~n~~-~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~  183 (340)
T 1sxj_C          140 NTRFCVLANYA-HKLTPALLSQCTRFRFQPLPQEAIERRIANVLV  183 (340)
T ss_dssp             TEEEEEEESCG-GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEEecCc-cccchhHHhhceeEeccCCCHHHHHHHHHHHHH
Confidence            34566667654 468899999999999999999999988887764

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.75  E-value=0.0013  Score=74.25  Aligned_cols=123  Identities=14%  Similarity=0.271  Sum_probs=67.0

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
                      ...||+|+||||||||++.+.+++.++              ..+..+++..+.  +.|+..       ....+..+++.+
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~~--------------~~~~~~~~~~~~--~~~~~~-------~~~~~~~~~~~a   94 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEAQ--------------VPFLAMAGAEFV--EVIGGL-------GAARVRSLFKEA   94 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHT--------------CCEEEEETTTTS--SSSTTH-------HHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhC--------------CCEEEechHHHH--hhccCh-------hHHHHHHHHHHH
Confidence            456899999999999999999988764              234556654432  122211       111222333333


Q ss_pred             hccCCCCceEEEEcCC--C------------ChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchh
Q psy4730        1430 AVSTTPDRKWIMFDGP--I------------DAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATV 1495 (1513)
Q Consensus      1430 ~~~~~~~~~WivfDG~--~------------d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatv 1495 (1513)
                      ..   .....+++|.-  +            +...-+.++.+|..      .++  +.-++++.++.-+.......|+..
T Consensus        95 ~~---~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~------~~~--~~~~~~~~vi~~tn~~~~ld~~l~  163 (262)
T 2qz4_A           95 RA---RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVE------MDG--MGTTDHVIVLASTNRADILDGALM  163 (262)
T ss_dssp             HH---TCSEEEEEECC-------------------CHHHHHHHHH------HHT--CCTTCCEEEEEEESCGGGGGSGGG
T ss_pred             Hh---cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHH------hhC--cCCCCCEEEEecCCChhhcCHHHh
Confidence            21   12468888841  1            22233445555431      000  112446677777766666678888


Q ss_pred             h--ccE-EEEeeCC
Q psy4730        1496 S--RVG-MIYFELK 1506 (1513)
Q Consensus      1496 s--Rcg-~v~~~~~ 1506 (1513)
                      +  |+. .+++++-
T Consensus       164 ~~~R~~~~i~i~~p  177 (262)
T 2qz4_A          164 RPGRLDRHVFIDLP  177 (262)
T ss_dssp             STTSCCEEEECCSC
T ss_pred             cCCcCCeEEEeCCc
Confidence            8  884 5565543

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.72  E-value=0.0031  Score=71.78  Aligned_cols=27  Identities=19%  Similarity=0.369  Sum_probs=22.8

Q ss_pred             cCCccceeccCCCccchHhHHHHHhcc
Q psy4730         727 QNDVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       727 ~~~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      ....++||+||||||||+++..+...+
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~   88 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEES   88 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence            344689999999999999999888754

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.72  E-value=0.0013  Score=67.16  Aligned_cols=36  Identities=17%  Similarity=0.194  Sum_probs=28.3

Q ss_pred             hHHHHHHHHhcCCccceeccCCCccchHhHHHHHhc
Q psy4730         717 MQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLN  752 (1513)
Q Consensus       717 ~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~  752 (1513)
                      +....+..+...+.||||.||||||||++++.+...
T Consensus        15 ~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           15 EMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             HHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             HHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence            444455566788999999999999999988866543

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.67  E-value=0.0029  Score=72.89  Aligned_cols=122  Identities=14%  Similarity=0.157  Sum_probs=65.0

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
                      .++|+|+||||||||++.+.+++.++              ..+..+++..+     ++.+...+    ......++..+.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~~--------------~~~~~i~~~~l-----~~~~~~~~----~~~~~~~~~~~~  110 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATECS--------------ATFLNISAASL-----TSKYVGDG----EKLVRALFAVAR  110 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTT--------------CEEEEEESTTT-----SSSSCSCH----HHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhC--------------CCeEEeeHHHH-----hhcccchH----HHHHHHHHHHHH
Confidence            57999999999999999999987653              24455665433     33222111    111122222221


Q ss_pred             ccCCCCceEEEEcCCC-------------ChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhc
Q psy4730        1431 VSTTPDRKWIMFDGPI-------------DAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSR 1497 (1513)
Q Consensus      1431 ~~~~~~~~WivfDG~~-------------d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsR 1497 (1513)
                         ......|++|..=             .......|-..+|.-.        .-....++.++.-|.+.....|+..+|
T Consensus       111 ---~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~~~v~vi~~tn~~~~l~~~l~~R  179 (297)
T 3b9p_A          111 ---HMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLP--------GNPDGDRIVVLAATNRPQELDEAALRR  179 (297)
T ss_dssp             ---HTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--------------CEEEEEEESCGGGBCHHHHHH
T ss_pred             ---HcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccc--------ccCCCCcEEEEeecCChhhCCHHHHhh
Confidence               1234788999520             0111111111122110        001124567777777777889999999


Q ss_pred             cE-EEEeeCC
Q psy4730        1498 VG-MIYFELK 1506 (1513)
Q Consensus      1498 cg-~v~~~~~ 1506 (1513)
                      |. .++++..
T Consensus       180 ~~~~i~~~~p  189 (297)
T 3b9p_A          180 FTKRVYVSLP  189 (297)
T ss_dssp             CCEEEECCCC
T ss_pred             CCeEEEeCCc
Confidence            94 5666543

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.65  E-value=0.0023  Score=75.71  Aligned_cols=58  Identities=12%  Similarity=0.209  Sum_probs=44.1

Q ss_pred             CceEEEEcCC--CChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeCC
Q psy4730        1436 DRKWIMFDGP--IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1436 ~~~WivfDG~--~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
                      ..+.+|+|.+  +|+.-.+.|-..|++             .++++.+|+-+++.....|+..|||..+.|.+-
T Consensus       134 ~~~vlilDE~~~L~~~~~~~L~~~le~-------------~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~  193 (354)
T 1sxj_E          134 RYKCVIINEANSLTKDAQAALRRTMEK-------------YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAP  193 (354)
T ss_dssp             CCEEEEEECTTSSCHHHHHHHHHHHHH-------------STTTEEEEEEESCSCSSCHHHHTTSEEEECCCC
T ss_pred             CCeEEEEeCccccCHHHHHHHHHHHHh-------------hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCc
Confidence            5789999954  566655666555543             135688999999999999999999988888763

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.64  E-value=0.0044  Score=73.03  Aligned_cols=113  Identities=17%  Similarity=0.223  Sum_probs=68.0

Q ss_pred             EEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCH--HHHHHHHhhc
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGI--LAKTFREMAV 1431 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~--l~~~lR~~~~ 1431 (1513)
                      ++++||+|+||||+++.+++.+..-..         ...+..+|+...                 .|+  +-..++...+
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~~~~~---------~~~~~~~~~~~~-----------------~~~~~ir~~i~~~~~  102 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIYGKNY---------SNMVLELNASDD-----------------RGIDVVRNQIKDFAS  102 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHTTSH---------HHHEEEECTTSC-----------------CSHHHHHTHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCCc---------cceEEEEcCccc-----------------ccHHHHHHHHHHHHh
Confidence            999999999999999999998752110         122333343210                 121  1112222221


Q ss_pred             cC---CCCceEEEEcCC--CChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeC
Q psy4730        1432 ST---TPDRKWIMFDGP--IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1432 ~~---~~~~~WivfDG~--~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
                      ..   ....+.+|+|..  +...-.+.|..+++.             .|+++.+++-+......-|+..|||..+.+.+
T Consensus       103 ~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~-------------~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~  168 (340)
T 1sxj_C          103 TRQIFSKGFKLIILDEADAMTNAAQNALRRVIER-------------YTKNTRFCVLANYAHKLTPALLSQCTRFRFQP  168 (340)
T ss_dssp             BCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHH-------------TTTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred             hcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhc-------------CCCCeEEEEEecCccccchhHHhhceeEeccC
Confidence            11   134788999952  333333444444432             24567788888777888999999999888765

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=96.63  E-value=0.0092  Score=70.90  Aligned_cols=45  Identities=7%  Similarity=0.192  Sum_probs=36.0

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ++.++++++.+ ..+.+.+.+|+..+.+.+|+.+++..+...++..
T Consensus       149 ~~~~Il~~~~~-~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~  193 (373)
T 1jr3_A          149 HVKFLLATTDP-QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE  193 (373)
T ss_dssp             SEEEEEEESCG-GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCh-HhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHH
Confidence            46677776543 3578899999999999999999999988887653

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.62  E-value=0.0039  Score=76.36  Aligned_cols=124  Identities=17%  Similarity=0.194  Sum_probs=68.4

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
                      .+||+|+||||||||++.+.++..+..             ..+..+++..+. ..+.|.    +    ...+..++..+.
T Consensus       167 ~~~vLL~GppGtGKT~lA~aia~~~~~-------------~~~~~v~~~~l~-~~~~g~----~----~~~~~~~f~~a~  224 (444)
T 2zan_A          167 WRGILLFGPPGTGKSYLAKAVATEANN-------------STFFSISSSDLV-SKWLGE----S----EKLVKNLFQLAR  224 (444)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHCCS-------------SEEEEECCC--------------C----CCTHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCC-------------CCEEEEeHHHHH-hhhcch----H----HHHHHHHHHHHH
Confidence            479999999999999999999877521             245556654332 122232    1    223344444332


Q ss_pred             ccCCCCceEEEEcCCCCh----------HH-HHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccE
Q psy4730        1431 VSTTPDRKWIMFDGPIDA----------VW-IENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVG 1499 (1513)
Q Consensus      1431 ~~~~~~~~WivfDG~~d~----------~w-iE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg 1499 (1513)
                      .   .....|++|. +|.          .. -..+|.+|      ..-+|-. .-++++.+|.-|.......||..+||.
T Consensus       225 ~---~~~~vl~iDE-id~l~~~~~~~~~~~~~~~~~~lL------~~l~~~~-~~~~~v~vI~atn~~~~ld~al~rRf~  293 (444)
T 2zan_A          225 E---NKPSIIFIDE-IDSLCGSRSENESEAARRIKTEFL------VQMQGVG-VDNDGILVLGATNIPWVLDSAIRRRFE  293 (444)
T ss_dssp             H---SCSEEEEESC-TTTTCCCSSCCCCGGGHHHHHHHH------TTTTCSS-CCCSSCEEEEEESCGGGSCHHHHTTCC
T ss_pred             H---cCCeEEEEec-hHhhccCCCCccccHHHHHHHHHH------HHHhCcc-cCCCCEEEEecCCCccccCHHHHhhcc
Confidence            1   2347888883 111          10 11112222      1111111 124567888888777888999999995


Q ss_pred             -EEEeeCCC
Q psy4730        1500 -MIYFELKC 1507 (1513)
Q Consensus      1500 -~v~~~~~~ 1507 (1513)
                       .++++..+
T Consensus       294 ~~i~i~~P~  302 (444)
T 2zan_A          294 KRIYIPLPE  302 (444)
T ss_dssp             EEEECCCCC
T ss_pred             eEEEeCCcC
Confidence             66776543

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.62  E-value=0.0009  Score=80.62  Aligned_cols=127  Identities=17%  Similarity=0.201  Sum_probs=67.8

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
                      .++|+|+||||+|||++.+.++..++              ..+..+++..+.. .+.|..        .+.+..+++.+.
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~~--------------~~~~~v~~~~l~~-~~~g~~--------~~~~~~~~~~a~  204 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAESN--------------ATFFNISAASLTS-KYVGEG--------EKLVRALFAVAR  204 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTT--------------CEEEEECSCCC--------C--------HHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhc--------------CcEEEeeHHHhhc-cccchH--------HHHHHHHHHHHH
Confidence            47999999999999999999977643              3567777754431 222211        223334444332


Q ss_pred             ccCCCCceEEEEcCCCChHH-------HHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccE-EEE
Q psy4730        1431 VSTTPDRKWIMFDGPIDAVW-------IENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVG-MIY 1502 (1513)
Q Consensus      1431 ~~~~~~~~WivfDG~~d~~w-------iE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg-~v~ 1502 (1513)
                      .   .....|++|. +|...       -+....++  +..|...+|-.-..+.++.+|.-+.......|+..+||. .|+
T Consensus       205 ~---~~~~il~iDE-id~l~~~~~~~~~~~~~~~~--~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~  278 (389)
T 3vfd_A          205 E---LQPSIIFIDQ-VDSLLCERREGEHDASRRLK--TEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVY  278 (389)
T ss_dssp             H---SSSEEEEEET-GGGGC--------CTHHHHH--HHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEE
T ss_pred             h---cCCeEEEEEC-chhhcccCCCccchHHHHHH--HHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEE
Confidence            2   1236888884 21110       00000000  011111122222234567788888877888999999996 677


Q ss_pred             eeCC
Q psy4730        1503 FELK 1506 (1513)
Q Consensus      1503 ~~~~ 1506 (1513)
                      ++.-
T Consensus       279 i~~p  282 (389)
T 3vfd_A          279 VSLP  282 (389)
T ss_dssp             CCCC
T ss_pred             cCCc
Confidence            7654

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.62  E-value=0.0033  Score=77.37  Aligned_cols=70  Identities=17%  Similarity=0.182  Sum_probs=47.0

Q ss_pred             cccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccccceEEecCceEEEEEecCC---------CCCCCCCchhHHh
Q psy4730        1125 WACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPG---------YAGRTELPDNLKV 1195 (1513)
Q Consensus      1125 W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g~~i~~~p~~~iFiTmNp~---------y~gr~~LP~nLk~ 1195 (1513)
                      -.++||+++++.+..+++-       +++..+             ...+-|++| ||+         ......||+.+++
T Consensus       298 VliIDEa~~l~~~a~~aLl-------k~lEe~-------------~~~~~il~t-n~~~~~i~~~~~~~~~~~l~~~i~s  356 (456)
T 2c9o_A          298 VLFVDEVHMLDIECFTYLH-------RALESS-------------IAPIVIFAS-NRGNCVIRGTEDITSPHGIPLDLLD  356 (456)
T ss_dssp             EEEEESGGGCBHHHHHHHH-------HHTTST-------------TCCEEEEEE-CCSEEECBTTSSCEEETTCCHHHHT
T ss_pred             EEEEechhhcCHHHHHHHH-------HHhhcc-------------CCCEEEEec-CCccccccccccccccccCChhHHh
Confidence            4578999999988776552       222221             112334456 663         2234579999999


Q ss_pred             hhhcccccCCChHHHHHHHH
Q psy4730        1196 LFRSVAMMVPDYAMIGEISL 1215 (1513)
Q Consensus      1196 lFR~v~~~~PD~~~I~ei~L 1215 (1513)
                      +|..+.+..++...+.+++-
T Consensus       357 R~~~~~~~~~~~~e~~~iL~  376 (456)
T 2c9o_A          357 RVMIIRTMLYTPQEMKQIIK  376 (456)
T ss_dssp             TEEEEECCCCCHHHHHHHHH
T ss_pred             hcceeeCCCCCHHHHHHHHH
Confidence            99999888888877777664

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.58  E-value=0.0035  Score=73.41  Aligned_cols=124  Identities=16%  Similarity=0.201  Sum_probs=69.1

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
                      .+||+|+||||||||++.+.++..+..             ..+..+++..+. ..+.|.        ....+..++..+.
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~~~~-------------~~~~~i~~~~l~-~~~~g~--------~~~~~~~lf~~a~  102 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATEANN-------------STFFSISSSDLV-SKWLGE--------SEKLVKNLFQLAR  102 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTS-------------CEEEEEECCSSC-CSSCCS--------CHHHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHHcCC-------------CcEEEEEhHHHH-hhhhhH--------HHHHHHHHHHHHH
Confidence            379999999999999999999877521             345556655432 112221        1223333333332


Q ss_pred             ccCCCCceEEEEcCCCChH----------HHH-hhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhcc-
Q psy4730        1431 VSTTPDRKWIMFDGPIDAV----------WIE-NMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRV- 1498 (1513)
Q Consensus      1431 ~~~~~~~~WivfDG~~d~~----------wiE-~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRc- 1498 (1513)
                      .   .....|++|. +|..          ... .+|.+|      ...+|-. .-+.++.+|.-|.......||..+|| 
T Consensus       103 ~---~~~~vl~iDE-id~l~~~~~~~~~~~~~~~~~~ll------~~ld~~~-~~~~~v~vI~atn~~~~ld~al~rRf~  171 (322)
T 1xwi_A          103 E---NKPSIIFIDE-IDSLCGSRSENESEAARRIKTEFL------VQMQGVG-VDNDGILVLGATNIPWVLDSAIRRRFE  171 (322)
T ss_dssp             H---TSSEEEEEET-TTGGGCCSSSCCTTHHHHHHHHHH------HHHHCSS-SCCTTEEEEEEESCTTTSCHHHHHTCC
T ss_pred             h---cCCcEEEeec-HHHhccccccccchHHHHHHHHHH------HHHhccc-ccCCCEEEEEecCCcccCCHHHHhhcC
Confidence            1   2357899994 2211          111 111111      1111100 01356677777777778899999999 


Q ss_pred             EEEEeeCCC
Q psy4730        1499 GMIYFELKC 1507 (1513)
Q Consensus      1499 g~v~~~~~~ 1507 (1513)
                      -.++++..+
T Consensus       172 ~~i~i~~P~  180 (322)
T 1xwi_A          172 KRIYIPLPE  180 (322)
T ss_dssp             EEEECCCCC
T ss_pred             eEEEeCCcC
Confidence            567776543

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.54  E-value=0.0021  Score=76.44  Aligned_cols=124  Identities=15%  Similarity=0.170  Sum_probs=67.4

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
                      ..++|+|+||||||||++.+.+++.++              ..+..+++.     ++++.+-        |-....++..
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~~--------------~~~~~i~~~-----~l~~~~~--------g~~~~~~~~~  168 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQSG--------------ATFFSISAS-----SLTSKWV--------GEGEKMVRAL  168 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHTT--------------CEEEEEEGG-----GGCCSST--------THHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcC--------------CeEEEEehH-----Hhhcccc--------chHHHHHHHH
Confidence            457999999999999999999987653              244556553     3333321        2222333322


Q ss_pred             hc-cCCCCceEEEEcCC--C--------ChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhcc
Q psy4730        1430 AV-STTPDRKWIMFDGP--I--------DAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRV 1498 (1513)
Q Consensus      1430 ~~-~~~~~~~WivfDG~--~--------d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRc 1498 (1513)
                      .. ........|++|..  +        +..-...++.+|      ..-+|-.-..+.++.+|.-|.......||..+||
T Consensus       169 ~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL------~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf  242 (357)
T 3d8b_A          169 FAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFL------VQLDGATTSSEDRILVVGATNRPQEIDEAARRRL  242 (357)
T ss_dssp             HHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHH------HHHHC----CCCCEEEEEEESCGGGBCHHHHTTC
T ss_pred             HHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHH------HHHhcccccCCCCEEEEEecCChhhCCHHHHhhC
Confidence            11 01123578999941  0        000011111221      1111222223456777777877777889999999


Q ss_pred             E-EEEeeCC
Q psy4730        1499 G-MIYFELK 1506 (1513)
Q Consensus      1499 g-~v~~~~~ 1506 (1513)
                      . .+++..-
T Consensus       243 ~~~i~i~~p  251 (357)
T 3d8b_A          243 VKRLYIPLP  251 (357)
T ss_dssp             CEEEECCCC
T ss_pred             ceEEEeCCc
Confidence            7 5566543

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.52  E-value=0.0028  Score=64.92  Aligned_cols=97  Identities=7%  Similarity=0.012  Sum_probs=59.6

Q ss_pred             HHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHH
Q psy4730        1343 QVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGIL 1422 (1513)
Q Consensus      1343 qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l 1422 (1513)
                      ++..+.....+|+|.||||||||++.+.++....+-           ...+. +|+..++..           ....|.+
T Consensus        16 ~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~-----------~~~~v-~~~~~~~~~-----------~~~~~~~   72 (145)
T 3n70_A           16 RLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNA-----------QGEFV-YRELTPDNA-----------PQLNDFI   72 (145)
T ss_dssp             HHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTT-----------TSCCE-EEECCTTTS-----------SCHHHHH
T ss_pred             HHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCcc-----------CCCEE-EECCCCCcc-----------hhhhcHH
Confidence            344455677899999999999999999997654321           11233 666655422           2233333


Q ss_pred             HHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeec
Q psy4730        1423 AKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE 1485 (1513)
Q Consensus      1423 ~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~ 1485 (1513)
                      .    .+.      ..-+++|  +.+++..-+.|-.+|.             ..+.++++|+-+.
T Consensus        73 ~----~a~------~g~l~ldei~~l~~~~q~~Ll~~l~-------------~~~~~~~~I~~t~  114 (145)
T 3n70_A           73 A----LAQ------GGTLVLSHPEHLTREQQYHLVQLQS-------------QEHRPFRLIGIGD  114 (145)
T ss_dssp             H----HHT------TSCEEEECGGGSCHHHHHHHHHHHH-------------SSSCSSCEEEEES
T ss_pred             H----HcC------CcEEEEcChHHCCHHHHHHHHHHHh-------------hcCCCEEEEEECC
Confidence            2    221      1357888  5667777777777771             1245677777664

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.51  E-value=0.0017  Score=77.09  Aligned_cols=120  Identities=15%  Similarity=0.163  Sum_probs=67.6

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
                      .+||+|+||||||||++.+.++..++              ..+..+++     .++++.+-...    +..+..++..+.
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~~--------------~~~~~v~~-----~~l~~~~~g~~----~~~~~~~f~~a~  140 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEAN--------------STFFSVSS-----SDLVSKWMGES----EKLVKQLFAMAR  140 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHHT--------------CEEEEEEH-----HHHHSCC---C----HHHHHHHHHHHH
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhC--------------CCEEEeeH-----HHHhhhhcchH----HHHHHHHHHHHH
Confidence            46899999999999999999998764              23444443     34444332111    122223333221


Q ss_pred             ccCCCCceEEEEcCCCCh--------------HHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhh
Q psy4730        1431 VSTTPDRKWIMFDGPIDA--------------VWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVS 1496 (1513)
Q Consensus      1431 ~~~~~~~~WivfDG~~d~--------------~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvs 1496 (1513)
                      .   .....|++|. +|.              .+.+.|-..||.-.          .-+.++.+|.-|.......||..+
T Consensus       141 ~---~~~~vl~iDE-id~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vI~atn~~~~ld~al~r  206 (355)
T 2qp9_X          141 E---NKPSIIFIDQ-VDALTGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLVLGATNIPWQLDSAIRR  206 (355)
T ss_dssp             H---TSSEEEEEEC-GGGGTC------CTHHHHHHHHHHHHHHHCC-------------CCEEEEEEESCGGGSCHHHHH
T ss_pred             H---cCCeEEEEec-hHhhcccCCCCcchHHHHHHHHHHHHhhccc----------ccCCCeEEEeecCCcccCCHHHHc
Confidence            1   2347889993 211              12233333333110          113456777777777778899999


Q ss_pred             cc-EEEEeeCCC
Q psy4730        1497 RV-GMIYFELKC 1507 (1513)
Q Consensus      1497 Rc-g~v~~~~~~ 1507 (1513)
                      || -.+++++-+
T Consensus       207 Rf~~~i~i~~P~  218 (355)
T 2qp9_X          207 RFERRIYIPLPD  218 (355)
T ss_dssp             TCCEEEECCCCC
T ss_pred             ccCEEEEeCCcC
Confidence            99 566666543

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.50  E-value=0.0053  Score=72.21  Aligned_cols=46  Identities=13%  Similarity=0.265  Sum_probs=36.8

Q ss_pred             ecceEEEEeecCCCCCCChhhhccce-EeecCCCChHHHHHHHHHHhh
Q psy4730         931 LVDIIYITAMIPTMNTITGRLLRHMN-IISIDSFNEATLSKIFTSVLD  977 (1513)
Q Consensus       931 ~~~~~~~~a~~~~~~~~~~r~~~~f~-~~~~~~~~~~~l~~i~~~~l~  977 (1513)
                      +..+.+++|.+++ ..+++++.+||. .+.+++|+.+++..|......
T Consensus       148 l~~~~li~at~~~-~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~  194 (334)
T 1in4_A          148 IQPFTLVGATTRS-GLLSSPLRSRFGIILELDFYTVKELKEIIKRAAS  194 (334)
T ss_dssp             -CCCEEEEEESCG-GGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEecCCc-ccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHH
Confidence            3457777776665 478999999996 478999999999999988654

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.47  E-value=0.0033  Score=75.01  Aligned_cols=141  Identities=12%  Similarity=0.043  Sum_probs=74.6

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC-hhh----ccccccCC--CCCCc-cCH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-MGQ----LYGEFDSA--SHEWR-DGI 1421 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t-~~e----L~G~~~~~--t~eW~-DG~ 1421 (1513)
                      ..++++|+||||+|||++++.+++.+.......     .....+..+|+...+ ..+    ++..+...  ..++. +.+
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  117 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSL-----GVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEV  117 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHH-----TCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhcc-----CCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHH
Confidence            346899999999999999999998875432110     012455667765544 222    22222111  11221 122


Q ss_pred             HHHHHHHhhccCCCCceEEEEcCC--CChH--HHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCC---CCCCcch
Q psy4730        1422 LAKTFREMAVSTTPDRKWIMFDGP--IDAV--WIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL---EFASPAT 1494 (1513)
Q Consensus      1422 l~~~lR~~~~~~~~~~~WivfDG~--~d~~--wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l---~~asPat 1494 (1513)
                      +..+.... . .......|++|..  +...  .-+.|..+++....+        +.+.++.+|+-+.+.   ....|+.
T Consensus       118 ~~~l~~~l-~-~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~--------~~~~~~~~I~~t~~~~~~~~l~~~l  187 (387)
T 2v1u_A          118 YERLVKRL-S-RLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQEL--------GDRVWVSLVGITNSLGFVENLEPRV  187 (387)
T ss_dssp             HHHHHHHH-T-TSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-------------CEEEEECSCSTTSSSSCHHH
T ss_pred             HHHHHHHH-h-ccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhc--------CCCceEEEEEEECCCchHhhhCHHH
Confidence            33332222 1 1334678999952  2111  234455554321111        114577788877665   6778999


Q ss_pred             hhcc--EEEEeeC
Q psy4730        1495 VSRV--GMIYFEL 1505 (1513)
Q Consensus      1495 vsRc--g~v~~~~ 1505 (1513)
                      .+||  ..+.+.|
T Consensus       188 ~~r~~~~~i~l~~  200 (387)
T 2v1u_A          188 KSSLGEVELVFPP  200 (387)
T ss_dssp             HTTTTSEECCBCC
T ss_pred             HhcCCCeEEeeCC
Confidence            9999  4566654

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.46  E-value=0.0036  Score=71.21  Aligned_cols=86  Identities=13%  Similarity=0.198  Sum_probs=51.5

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
                      ..++++|+||||+|||++.+.+++.++              ..+..++..    ++++|....    -..+.+..++..+
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~~~--------------~~~~~i~~~----~~~~g~~~~----~~~~~~~~~~~~~  120 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEESN--------------FPFIKICSP----DKMIGFSET----AKCQAMKKIFDDA  120 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHT--------------CSEEEEECG----GGCTTCCHH----HHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhC--------------CCEEEEeCH----HHhcCCchH----HHHHHHHHHHHHH
Confidence            346999999999999999999998753              233444432    356664210    1112223333333


Q ss_pred             hccCCCCceEEEEcCC------------CChHHHHhhhcccCC
Q psy4730        1430 AVSTTPDRKWIMFDGP------------IDAVWIENMNTVLDD 1460 (1513)
Q Consensus      1430 ~~~~~~~~~WivfDG~------------~d~~wiE~LNsvLDd 1460 (1513)
                      .   .....-|++|.-            ....+++.|..+++.
T Consensus       121 ~---~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~  160 (272)
T 1d2n_A          121 Y---KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKK  160 (272)
T ss_dssp             H---TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTC
T ss_pred             H---hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcC
Confidence            2   133578999951            245577777777653

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.42  E-value=0.0073  Score=69.89  Aligned_cols=119  Identities=20%  Similarity=0.358  Sum_probs=67.5

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
                      ..+||+|+||||||||++.+.++..++              .....+++..+ ...++|..    .    ..+..++..+
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~~~--------------~~~i~v~~~~l-~~~~~g~~----~----~~~~~~f~~a  104 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANECQ--------------ANFISIKGPEL-LTMWFGES----E----ANVREIFDKA  104 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHHTT--------------CEEEEECHHHH-HHHHHTTC----T----THHHHHHHHH
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHHhC--------------CCEEEEEhHHH-HhhhcCch----H----HHHHHHHHHH
Confidence            456899999999999999999987653              23344443322 12334422    1    1223333333


Q ss_pred             hccCCCCceEEEEcCCCChHH-----------------HHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCc
Q psy4730        1430 AVSTTPDRKWIMFDGPIDAVW-----------------IENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASP 1492 (1513)
Q Consensus      1430 ~~~~~~~~~WivfDG~~d~~w-----------------iE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asP 1492 (1513)
                      ..   ....-+++|. +|...                 +..|-+.||         |  +.-+.++.+|.-|.......|
T Consensus       105 ~~---~~p~il~iDE-id~l~~~~~~~~~~~~~~~~~~~~~lL~~l~---------~--~~~~~~v~vi~atn~~~~ld~  169 (301)
T 3cf0_A          105 RQ---AAPCVLFFDE-LDSIAKARGGNIGDGGGAADRVINQILTEMD---------G--MSTKKNVFIIGATNRPDIIDP  169 (301)
T ss_dssp             HH---TCSEEEEECS-TTHHHHHHTTTTCCSSCSCCHHHHHHHHHHH---------S--SCTTSSEEEEEEESCGGGSCG
T ss_pred             Hh---cCCeEEEEEC-hHHHhhccCCCcCCcchHHHHHHHHHHHHhh---------c--ccCCCCEEEEEecCCccccCh
Confidence            21   1246888885 33221                 112222222         1  112356788888877777889


Q ss_pred             chhh--ccE-EEEeeCC
Q psy4730        1493 ATVS--RVG-MIYFELK 1506 (1513)
Q Consensus      1493 atvs--Rcg-~v~~~~~ 1506 (1513)
                      |.++  |+. .|+++.-
T Consensus       170 al~r~gRf~~~i~i~~p  186 (301)
T 3cf0_A          170 AILRPGRLDQLIYIPLP  186 (301)
T ss_dssp             GGGSTTSSCEEEECCCC
T ss_pred             HHhcCCccceEEecCCc
Confidence            8888  885 5666553

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=96.38  E-value=0.053  Score=64.99  Aligned_cols=117  Identities=18%  Similarity=0.226  Sum_probs=68.8

Q ss_pred             HHhhccC-CCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC------CCCCChhhhccceEeecC
Q psy4730         889 MILDDLN-MPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------MNTITGRLLRHMNIISID  961 (1513)
Q Consensus       889 ~~~dd~n-~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------~~~~~~r~~~~f~~~~~~  961 (1513)
                      +|+|++. ||.       ....-|-++++.|.+...+.. ...-.|+++|+|+|.+      .....+.|+.|++++.+.
T Consensus       235 lfldei~~l~~-------~~q~~Ll~~l~~~~~~~~g~~-~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~  306 (387)
T 1ny5_A          235 LFLDEIGELSL-------EAQAKLLRVIESGKFYRLGGR-KEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIE  306 (387)
T ss_dssp             EEEESGGGCCH-------HHHHHHHHHHHHSEECCBTCC-SBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEE
T ss_pred             EEEcChhhCCH-------HHHHHHHHHHhcCcEEeCCCC-ceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeec
Confidence            3457776 432       234445556666666544432 2334589999999986      456778888888776655


Q ss_pred             CCCh----HHHHHHHHHHhhhhhhc------cchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccccchhhHHHHHh
Q psy4730         962 SFNE----ATLSKIFTSVLDWHFSK------GFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIM 1031 (1513)
Q Consensus       962 ~~~~----~~l~~i~~~~l~~~~~~------~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hy~fnlrd~~~~~~ 1031 (1513)
                      -|+-    +++..+...++..+-.+      ++.++.....                      ...+|--|.|.|.++++
T Consensus       307 lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l----------------------~~~~wpGNvreL~~~i~  364 (387)
T 1ny5_A          307 IPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELL----------------------LSYPWYGNVRELKNVIE  364 (387)
T ss_dssp             CCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHH----------------------HHSCCTTHHHHHHHHHH
T ss_pred             CCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH----------------------HhCCCCcHHHHHHHHHH
Confidence            5543    57777776666543211      2322221111                      12356679999999987


Q ss_pred             hhcc
Q psy4730        1032 GLTQ 1035 (1513)
Q Consensus      1032 g~~~ 1035 (1513)
                      -...
T Consensus       365 ~~~~  368 (387)
T 1ny5_A          365 RAVL  368 (387)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.35  E-value=0.0024  Score=74.69  Aligned_cols=119  Identities=14%  Similarity=0.167  Sum_probs=67.6

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
                      .+||+|+||||||||++.+.++..++              ..+..+++     .++++.+-..    ..+.+..+++.+.
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~~--------------~~~~~v~~-----~~l~~~~~g~----~~~~~~~~f~~a~  107 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEAN--------------STFFSVSS-----SDLVSKWMGE----SEKLVKQLFAMAR  107 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHHT--------------CEEEEEEH-----HHHHTTTGGG----HHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHC--------------CCEEEEch-----HHHhhcccch----HHHHHHHHHHHHH
Confidence            46899999999999999999987754              23444544     3444432211    1222333333332


Q ss_pred             ccCCCCceEEEEcCCCCh--------------HHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhh
Q psy4730        1431 VSTTPDRKWIMFDGPIDA--------------VWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVS 1496 (1513)
Q Consensus      1431 ~~~~~~~~WivfDG~~d~--------------~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvs 1496 (1513)
                      .   ....-|++|. +|.              ...+.+-..+|.-.          .-+.++.+|.-|.......||..+
T Consensus       108 ~---~~~~vl~iDE-id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vi~atn~~~~ld~al~~  173 (322)
T 3eie_A          108 E---NKPSIIFIDQ-VDALTGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLVLGATNIPWQLDSAIRR  173 (322)
T ss_dssp             H---TSSEEEEEEC-GGGGSCC------CCTHHHHHHHHHHHGGGG----------TSCCCEEEEEEESCGGGSCHHHHH
T ss_pred             h---cCCeEEEech-hhhhhccCCCCcchHHHHHHHHHHHHhcccc----------ccCCceEEEEecCChhhCCHHHHc
Confidence            1   2346788884 111              12222222332110          123456777777777788999999


Q ss_pred             ccE-EEEeeCC
Q psy4730        1497 RVG-MIYFELK 1506 (1513)
Q Consensus      1497 Rcg-~v~~~~~ 1506 (1513)
                      ||. .|+++.-
T Consensus       174 Rf~~~i~~~~p  184 (322)
T 3eie_A          174 RFERRIYIPLP  184 (322)
T ss_dssp             HCCEEEECCCC
T ss_pred             ccCeEEEeCCC
Confidence            995 5566543

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.33  E-value=0.012  Score=66.16  Aligned_cols=44  Identities=20%  Similarity=0.222  Sum_probs=34.1

Q ss_pred             ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLD  977 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~  977 (1513)
                      .+..+|+++.|. .+++.++|  ||. .+.++.|+.++...|+.....
T Consensus       154 ~~i~~a~t~~p~-~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~  200 (254)
T 1ixz_A          154 AIVVMAATNRPD-ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR  200 (254)
T ss_dssp             CEEEEEEESCGG-GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT
T ss_pred             CEEEEEccCCch-hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc
Confidence            355667777774 48999998  664 589999999999999876554

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.25  E-value=0.017  Score=68.83  Aligned_cols=132  Identities=13%  Similarity=0.095  Sum_probs=75.5

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC-hhhcc-------ccccCCCCCCccCHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-MGQLY-------GEFDSASHEWRDGILAK 1424 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t-~~eL~-------G~~~~~t~eW~DG~l~~ 1424 (1513)
                      .++|+||+|+||||+++.+++.+..-.          ...+..+|+.... ..+++       |.-.+. ..+..+-+..
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~----------~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~  114 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKT----------TARFVYINGFIYRNFTAIIGEIARSLNIPFPR-RGLSRDEFLA  114 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSC----------CCEEEEEETTTCCSHHHHHHHHHHHTTCCCCS-SCCCHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhc----------CeeEEEEeCccCCCHHHHHHHHHHHhCccCCC-CCCCHHHHHH
Confidence            799999999999999999987764210          1345566644333 22222       221111 1122111222


Q ss_pred             HHHHhhccCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCC---CCCCcchhhccE
Q psy4730        1425 TFREMAVSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL---EFASPATVSRVG 1499 (1513)
Q Consensus      1425 ~lR~~~~~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l---~~asPatvsRcg 1499 (1513)
                      .+.+.... ......|++|.  .+|+..++.|-.++++-+     . +   -..++.+|+-+.+.   ....|+..+||+
T Consensus       115 ~l~~~l~~-~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~-----~-~---~~~~~~iI~~~~~~~~~~~l~~~~~~r~~  184 (389)
T 1fnn_A          115 LLVEHLRE-RDLYMFLVLDDAFNLAPDILSTFIRLGQEAD-----K-L---GAFRIALVIVGHNDAVLNNLDPSTRGIMG  184 (389)
T ss_dssp             HHHHHHHH-TTCCEEEEEETGGGSCHHHHHHHHHHTTCHH-----H-H---SSCCEEEEEEESSTHHHHTSCHHHHHHHT
T ss_pred             HHHHHHhh-cCCeEEEEEECccccchHHHHHHHHHHHhCC-----C-C---CcCCEEEEEEECCchHHHHhCHHhhhcCC
Confidence            22222111 23457999995  357777888877775321     0 0   01356777776665   567788889998


Q ss_pred             --EEEeeC
Q psy4730        1500 --MIYFEL 1505 (1513)
Q Consensus      1500 --~v~~~~ 1505 (1513)
                        .+.+.|
T Consensus       185 ~~~i~~~p  192 (389)
T 1fnn_A          185 KYVIRFSP  192 (389)
T ss_dssp             TCEEECCC
T ss_pred             CceEEeCC
Confidence              577765

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=96.24  E-value=0.032  Score=65.45  Aligned_cols=43  Identities=7%  Similarity=0.048  Sum_probs=34.8

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVL  976 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l  976 (1513)
                      ++.+|.+++.+ ..+.|.+.+|+..+.+.+|+.+++..+.....
T Consensus       138 ~~~~Il~t~~~-~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~  180 (334)
T 1a5t_A          138 ETWFFLATREP-ERLLATLRSRCRLHYLAPPPEQYAVTWLSREV  180 (334)
T ss_dssp             TEEEEEEESCG-GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC
T ss_pred             CeEEEEEeCCh-HhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc
Confidence            45667666654 56899999999999999999999888777653

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.24  E-value=0.01  Score=70.14  Aligned_cols=94  Identities=16%  Similarity=0.081  Sum_probs=51.0

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
                      .-|.|+||+||||||++++++..+..-.+.         ..+..=+|-......--+.+....-....--+..+++.+..
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~---------~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~  194 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYH---------HILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALR  194 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHHCCC---------EEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcccCCCCc---------EEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhh
Confidence            358899999999999999998877642111         12233344333322111111100000000112334444422


Q ss_pred             cCCCCceEEEEcCCCChHHHHhhhcc
Q psy4730        1432 STTPDRKWIMFDGPIDAVWIENMNTV 1457 (1513)
Q Consensus      1432 ~~~~~~~WivfDG~~d~~wiE~LNsv 1457 (1513)
                         ..+.+|++|.|-|++-++.+-.+
T Consensus       195 ---~~PdvillDEp~d~e~~~~~~~~  217 (356)
T 3jvv_A          195 ---EDPDIILVGEMRDLETIRLALTA  217 (356)
T ss_dssp             ---SCCSEEEESCCCSHHHHHHHHHH
T ss_pred             ---hCcCEEecCCCCCHHHHHHHHHH
Confidence               34689999999998877665444

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.15  E-value=0.00076  Score=87.39  Aligned_cols=45  Identities=22%  Similarity=0.283  Sum_probs=32.0

Q ss_pred             ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ++.++||+|.| ..|+|.++|  ||- .++++.|+.++...|+..+++.
T Consensus       616 ~V~vi~aTN~p-~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~  663 (806)
T 3cf2_A          616 NVFIIGATNRP-DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK  663 (806)
T ss_dssp             SEEEECC-CCS-SSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSC
T ss_pred             CEEEEEeCCCc-hhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcC
Confidence            57889999987 469999999  896 4999999999999988876543

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.12  E-value=0.007  Score=68.52  Aligned_cols=26  Identities=27%  Similarity=0.373  Sum_probs=23.3

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .+||+|+||||||||++.+.+++.++
T Consensus        44 ~~~vll~G~~GtGKT~la~~la~~~~   69 (268)
T 2r62_A           44 PKGVLLVGPPGTGKTLLAKAVAGEAH   69 (268)
T ss_dssp             CSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhC
Confidence            56899999999999999999988754

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=96.05  E-value=0.012  Score=68.12  Aligned_cols=119  Identities=14%  Similarity=0.201  Sum_probs=72.2

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCH--HHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGI--LAKTFRE 1428 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~--l~~~lR~ 1428 (1513)
                      .|..++.||+|+||||+.+.+++.......        ....+..++|..-                .-|+  +-.++..
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~--------~~~d~~~l~~~~~----------------~~~id~ir~li~~   73 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEYVEKFPP--------KASDVLEIDPEGE----------------NIGIDDIRTIKDF   73 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHHTSCC--------CTTTEEEECCSSS----------------CBCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhCchhhc--------cCCCEEEEcCCcC----------------CCCHHHHHHHHHH
Confidence            368999999999999999999986432110        1124455665410                0121  2233333


Q ss_pred             hhccC-CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeCC
Q psy4730        1429 MAVST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1429 ~~~~~-~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
                      +...+ ...++.+|+|. +|..=-+..|.+|   |.|-       ..|+++.+||-+++....-|+-.||  ++.|.+-
T Consensus        74 ~~~~p~~~~~kvviIde-ad~lt~~a~naLL---k~LE-------ep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l  139 (305)
T 2gno_A           74 LNYSPELYTRKYVIVHD-CERMTQQAANAFL---KALE-------EPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVN  139 (305)
T ss_dssp             HTSCCSSSSSEEEEETT-GGGBCHHHHHHTH---HHHH-------SCCTTEEEEEEESCGGGSCHHHHTT--SEEEECC
T ss_pred             HhhccccCCceEEEecc-HHHhCHHHHHHHH---HHHh-------CCCCCeEEEEEECChHhChHHHHce--eEeCCCC
Confidence            33333 24578999996 1221123344443   1110       1267899999999999999999999  7877653

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.02  E-value=0.011  Score=65.30  Aligned_cols=28  Identities=11%  Similarity=0.152  Sum_probs=24.8

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      ..++++|+||+|||||++.+.+++.+..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~   78 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANE   78 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3579999999999999999999988764

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=95.98  E-value=0.033  Score=66.31  Aligned_cols=136  Identities=19%  Similarity=0.236  Sum_probs=92.4

Q ss_pred             HHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCC---CCC
Q psy4730        1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSA---SHE 1416 (1513)
Q Consensus      1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~---t~e 1416 (1513)
                      +........+|++.|++|+||+++.+.+.....+            ...+..+|+.+++    -++|||+-.-.   ...
T Consensus       145 ~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r------------~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~  212 (368)
T 3dzd_A          145 IPKIAKSKAPVLITGESGTGKEIVARLIHRYSGR------------KGAFVDLNCASIPQELAESELFGHEKGAFTGALT  212 (368)
T ss_dssp             HHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCC------------CSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCC
T ss_pred             hhhhhccchhheEEeCCCchHHHHHHHHHHhccc------------cCCcEEEEcccCChHHHHHHhcCccccccCCccc
Confidence            3444556779999999999999999888765432            1126788888877    67899964311   124


Q ss_pred             CccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeec-CCC-----
Q psy4730        1417 WRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE-NLE----- 1488 (1513)
Q Consensus      1417 W~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~-~l~----- 1488 (1513)
                      +..|.|..+  +        .-=+++|  |.+++..-..|-.+|++...-.+.+..  ..+-++|+|+.|. ||.     
T Consensus       213 ~~~g~~~~a--~--------~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~--~~~~~~rii~at~~~l~~~v~~  280 (368)
T 3dzd_A          213 RKKGKLELA--D--------QGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQ--KIEVDIRVISATNKNLEEEIKK  280 (368)
T ss_dssp             CEECHHHHT--T--------TSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCC--BEECCCEEEEEESSCHHHHHHT
T ss_pred             ccCChHhhc--C--------CCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCc--ceeeeeEEEEecCCCHHHHHHc
Confidence            677777532  1        1348889  788999999999999887665554443  3456799999885 332     


Q ss_pred             -CCCcchhhccEEEEe
Q psy4730        1489 -FASPATVSRVGMIYF 1503 (1513)
Q Consensus      1489 -~asPatvsRcg~v~~ 1503 (1513)
                       .--+....|+..+.+
T Consensus       281 g~fr~dL~~rl~~~~i  296 (368)
T 3dzd_A          281 GNFREDLYYRLSVFQI  296 (368)
T ss_dssp             TSSCHHHHHHHTSEEE
T ss_pred             CCccHHHHHHhCCeEE
Confidence             223456677766543

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=95.92  E-value=0.018  Score=65.72  Aligned_cols=44  Identities=20%  Similarity=0.222  Sum_probs=34.3

Q ss_pred             ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLD  977 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~  977 (1513)
                      .+..+|+++.|. .+++.++|  ||. .+.++.|+.++...|+..++.
T Consensus       178 ~~i~~a~t~~p~-~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~  224 (278)
T 1iy2_A          178 AIVVMAATNRPD-ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR  224 (278)
T ss_dssp             CEEEEEEESCTT-SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT
T ss_pred             CEEEEEecCCch-hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc
Confidence            356678888774 49999997  664 589999999999999886543

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.92  E-value=0.0043  Score=63.35  Aligned_cols=90  Identities=8%  Similarity=0.059  Sum_probs=57.6

Q ss_pred             HHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHH
Q psy4730        1347 MILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTF 1426 (1513)
Q Consensus      1347 ~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~l 1426 (1513)
                      +.....+|+|.||||||||++.+.++....               .+..+|+..++..            |..|++    
T Consensus        23 ~~~~~~~vll~G~~GtGKt~lA~~i~~~~~---------------~~~~~~~~~~~~~------------~~~~~~----   71 (143)
T 3co5_A           23 AAKRTSPVFLTGEAGSPFETVARYFHKNGT---------------PWVSPARVEYLID------------MPMELL----   71 (143)
T ss_dssp             HHTCSSCEEEEEETTCCHHHHHGGGCCTTS---------------CEECCSSTTHHHH------------CHHHHH----
T ss_pred             HhCCCCcEEEECCCCccHHHHHHHHHHhCC---------------CeEEechhhCChH------------hhhhHH----
Confidence            345678999999999999999888764321               2344555443211            122332    


Q ss_pred             HHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeec
Q psy4730        1427 REMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE 1485 (1513)
Q Consensus      1427 R~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~ 1485 (1513)
                      ...      ...-+++|  +.+++.....|-.+|++..            +.++++|+-+.
T Consensus        72 ~~a------~~~~l~lDei~~l~~~~q~~Ll~~l~~~~------------~~~~~iI~~tn  114 (143)
T 3co5_A           72 QKA------EGGVLYVGDIAQYSRNIQTGITFIIGKAE------------RCRVRVIASCS  114 (143)
T ss_dssp             HHT------TTSEEEEEECTTCCHHHHHHHHHHHHHHT------------TTTCEEEEEEE
T ss_pred             HhC------CCCeEEEeChHHCCHHHHHHHHHHHHhCC------------CCCEEEEEecC
Confidence            222      12568899  6677777777877777532            56788888764

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.88  E-value=0.029  Score=70.00  Aligned_cols=123  Identities=17%  Similarity=0.068  Sum_probs=65.5

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhcc----ccccCCCCCCccCHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLY----GEFDSASHEWRDGILAKTF 1426 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~----G~~~~~t~eW~DG~l~~~l 1426 (1513)
                      .++++|.||||+|||++.+.+++.++              ..+..+|+.......++    +.....  .=..|++..+.
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l~--------------~~~i~in~s~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~  140 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQELG--------------YDILEQNASDVRSKTLLNAGVKNALDN--MSVVGYFKHNE  140 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTT--------------CEEEEECTTSCCCHHHHHHTGGGGTTB--CCSTTTTTC--
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC--------------CCEEEEeCCCcchHHHHHHHHHHHhcc--ccHHHHHhhhh
Confidence            47999999999999999999998763              34566777665433221    111000  00112221111


Q ss_pred             HHhhccCCCCceEEEEcCC--C---ChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCC-CCCcchhhccEE
Q psy4730        1427 REMAVSTTPDRKWIMFDGP--I---DAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE-FASPATVSRVGM 1500 (1513)
Q Consensus      1427 R~~~~~~~~~~~WivfDG~--~---d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~-~asPatvsRcg~ 1500 (1513)
                      .  .........-|++|.-  +   +..-++.|+.+++..               +..+++=+.+.. ..-|+..+||..
T Consensus       141 ~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~---------------~~~iIli~~~~~~~~l~~l~~r~~~  203 (516)
T 1sxj_A          141 E--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT---------------STPLILICNERNLPKMRPFDRVCLD  203 (516)
T ss_dssp             ----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC---------------SSCEEEEESCTTSSTTGGGTTTSEE
T ss_pred             h--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc---------------CCCEEEEEcCCCCccchhhHhceEE
Confidence            0  0011245578899941  1   222345566666432               223444443332 223556788988


Q ss_pred             EEeeCC
Q psy4730        1501 IYFELK 1506 (1513)
Q Consensus      1501 v~~~~~ 1506 (1513)
                      |.|.+-
T Consensus       204 i~f~~~  209 (516)
T 1sxj_A          204 IQFRRP  209 (516)
T ss_dssp             EECCCC
T ss_pred             EEeCCC
Confidence            887764

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.83  E-value=0.0052  Score=65.84  Aligned_cols=29  Identities=21%  Similarity=0.268  Sum_probs=24.6

Q ss_pred             HHhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1348 ILVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1348 ~~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      +....-|+|+|++||||||+.+.|++.++
T Consensus         6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~   34 (196)
T 2c95_A            6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYG   34 (196)
T ss_dssp             HTTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             CcCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            33445799999999999999999998775

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=95.78  E-value=0.0053  Score=75.82  Aligned_cols=119  Identities=20%  Similarity=0.273  Sum_probs=70.0

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
                      ...||+|+||||||||++.+.++..++              ..+..+|+..+. .+++|..        .|.+..++..+
T Consensus       237 ~~~~vLL~GppGtGKT~lAraia~~~~--------------~~fv~vn~~~l~-~~~~g~~--------~~~~~~~f~~A  293 (489)
T 3hu3_A          237 PPRGILLYGPPGTGKTLIARAVANETG--------------AFFFLINGPEIM-SKLAGES--------ESNLRKAFEEA  293 (489)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHCS--------------SEEEEEEHHHHH-TSCTTHH--------HHHHHHHHHHH
T ss_pred             CCCcEEEECcCCCCHHHHHHHHHHHhC--------------CCEEEEEchHhh-hhhcchh--------HHHHHHHHHHH
Confidence            456899999999999999999976642              345566654332 2333322        22333444433


Q ss_pred             hccCCCCceEEEEcCC-------------CChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhh
Q psy4730        1430 AVSTTPDRKWIMFDGP-------------IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVS 1496 (1513)
Q Consensus      1430 ~~~~~~~~~WivfDG~-------------~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvs 1496 (1513)
                      ..   ....-|++|.-             ........|-.+||.           +..+.++.+|.-|.......|+..+
T Consensus       294 ~~---~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~-----------~~~~~~v~vIaaTn~~~~Ld~al~r  359 (489)
T 3hu3_A          294 EK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG-----------LKQRAHVIVMAATNRPNSIDPALRR  359 (489)
T ss_dssp             HH---TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHH-----------SCTTSCEEEEEEESCGGGBCGGGGS
T ss_pred             Hh---cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhc-----------cccCCceEEEEecCCccccCHHHhC
Confidence            22   12357888841             111334445555542           1234567788888777777899888


Q ss_pred             --ccEE-EEeeC
Q psy4730        1497 --RVGM-IYFEL 1505 (1513)
Q Consensus      1497 --Rcg~-v~~~~ 1505 (1513)
                        |+.. |++..
T Consensus       360 ~gRf~~~i~i~~  371 (489)
T 3hu3_A          360 FGRFDREVDIGI  371 (489)
T ss_dssp             TTSSCEEEECCC
T ss_pred             CCcCceEEEeCC
Confidence              6654 55544

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.78  E-value=0.027  Score=66.06  Aligned_cols=121  Identities=17%  Similarity=0.257  Sum_probs=66.1

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
                      +.++|+|||||||||+.++++..++.              .+...+          |...     ...+-+..+++..  
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~--------------~~~~~s----------g~~~-----~~~~~l~~~~~~~--  100 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQT--------------NIHVTS----------GPVL-----VKQGDMAAILTSL--  100 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTC--------------CEEEEE----------TTTC-----CSHHHHHHHHHHC--
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCC--------------CEEEEe----------chHh-----cCHHHHHHHHHHc--
Confidence            57999999999999999999988742              111111          1110     0111222222221  


Q ss_pred             cCCCCceEEEEcC--CCChHHHHhhhcccCCCC-ceeecCC---Ceee-cCCCCeEEEeecCCCCCCcchhhccEEE-Ee
Q psy4730        1432 STTPDRKWIMFDG--PIDAVWIENMNTVLDDNK-KLCLING---EIIK-MSNTMNLIFECENLEFASPATVSRVGMI-YF 1503 (1513)
Q Consensus      1432 ~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~-~L~L~nG---e~i~-~~~~~~~iFE~~~l~~asPatvsRcg~v-~~ 1503 (1513)
                         .....+++|-  .+.+..-|.|-..+.+.+ .+.+..|   .++. ..+.+.++..+......||+..+||+++ .+
T Consensus       101 ---~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~L  177 (334)
T 1in4_A          101 ---ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILEL  177 (334)
T ss_dssp             ---CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEEC
T ss_pred             ---cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeC
Confidence               1235666663  234455676655554432 1112222   1222 2245677777888889999999999864 56


Q ss_pred             eCC
Q psy4730        1504 ELK 1506 (1513)
Q Consensus      1504 ~~~ 1506 (1513)
                      ++-
T Consensus       178 d~~  180 (334)
T 1in4_A          178 DFY  180 (334)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            664

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=95.75  E-value=0.0054  Score=69.41  Aligned_cols=26  Identities=27%  Similarity=0.255  Sum_probs=23.1

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .-|+|+|+|||||||+.+.|++.+..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~~L~~   30 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAKILSK   30 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            35899999999999999999988764

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=95.65  E-value=0.0054  Score=65.04  Aligned_cols=26  Identities=27%  Similarity=0.252  Sum_probs=23.7

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..+++|+||+||||||+.+.++..+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999988775

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=95.58  E-value=0.015  Score=66.23  Aligned_cols=44  Identities=14%  Similarity=0.171  Sum_probs=35.5

Q ss_pred             ceEEEEeecCCCCCCChhhhc--cceE-eecCCCChHHHHHHHHHHhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLR--HMNI-ISIDSFNEATLSKIFTSVLD  977 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~--~f~~-~~~~~~~~~~l~~i~~~~l~  977 (1513)
                      .+..+|++|.|. .++|.++|  ||.. ++++.|+.++...|+..++.
T Consensus       146 ~~i~ia~tn~p~-~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~  192 (274)
T 2x8a_A          146 QVFIMAATNRPD-IIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK  192 (274)
T ss_dssp             CEEEEEEESCGG-GSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred             CEEEEeecCChh-hCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence            345667777764 47999998  8865 89999999999999998764

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.50  E-value=0.017  Score=70.74  Aligned_cols=123  Identities=15%  Similarity=0.185  Sum_probs=66.9

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
                      ..||+|+||||||||++.+.++...+              +.+..+++..+. ..+.|.-    ..    -+..++.++.
T Consensus        49 p~gvLL~GppGtGKT~Laraia~~~~--------------~~f~~is~~~~~-~~~~g~~----~~----~~r~lf~~A~  105 (476)
T 2ce7_A           49 PKGILLVGPPGTGKTLLARAVAGEAN--------------VPFFHISGSDFV-ELFVGVG----AA----RVRDLFAQAK  105 (476)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHHT--------------CCEEEEEGGGTT-TCCTTHH----HH----HHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcC--------------CCeeeCCHHHHH-HHHhccc----HH----HHHHHHHHHH
Confidence            46899999999999999999987553              334555544332 1122210    00    0112222221


Q ss_pred             ccCCCCceEEEEcCC-------------CChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhh-
Q psy4730        1431 VSTTPDRKWIMFDGP-------------IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVS- 1496 (1513)
Q Consensus      1431 ~~~~~~~~WivfDG~-------------~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvs- 1496 (1513)
                      .   ..+..|++|..             .++...+.+|.+|..      .+|  +.-+.++.+|.-|.....+-||.+. 
T Consensus       106 ~---~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~------ld~--~~~~~~viVIaaTn~~~~Ld~allR~  174 (476)
T 2ce7_A          106 A---HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVE------MDG--FDSKEGIIVMAATNRPDILDPALLRP  174 (476)
T ss_dssp             H---TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHH------HHH--SCGGGTEEEEEEESCGGGSCGGGGST
T ss_pred             h---cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHH------Hhc--cCCCCCEEEEEecCChhhhchhhccc
Confidence            1   23578899953             133444556655521      000  1113466777777777777787764 


Q ss_pred             -ccE-EEEeeCCC
Q psy4730        1497 -RVG-MIYFELKC 1507 (1513)
Q Consensus      1497 -Rcg-~v~~~~~~ 1507 (1513)
                       |+. .|++++.+
T Consensus       175 gRFd~~i~i~~Pd  187 (476)
T 2ce7_A          175 GRFDKKIVVDPPD  187 (476)
T ss_dssp             TSSCEEEECCCCC
T ss_pred             CcceeEeecCCCC
Confidence             655 55565443

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.49  E-value=0.013  Score=63.59  Aligned_cols=26  Identities=19%  Similarity=0.083  Sum_probs=23.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .-|+|.|++||||||+.+.|++.++.
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            35899999999999999999998864

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=95.48  E-value=0.053  Score=62.72  Aligned_cols=41  Identities=0%  Similarity=-0.027  Sum_probs=32.7

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVL  976 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l  976 (1513)
                      ++.||.+++.+ ..+.|-+.+|  ++.+.+|+.+++.......+
T Consensus       112 ~t~fIl~t~~~-~kl~~tI~SR--~~~f~~l~~~~i~~~L~~~~  152 (305)
T 2gno_A          112 YAVIVLNTRRW-HYLLPTIKSR--VFRVVVNVPKEFRDLVKEKI  152 (305)
T ss_dssp             TEEEEEEESCG-GGSCHHHHTT--SEEEECCCCHHHHHHHHHHH
T ss_pred             CeEEEEEECCh-HhChHHHHce--eEeCCCCCHHHHHHHHHHHh
Confidence            56677776544 4788999999  99999999999988877764

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.47  E-value=0.0057  Score=71.51  Aligned_cols=27  Identities=19%  Similarity=0.235  Sum_probs=23.9

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .++++|+||||+||||+.+.++..+..
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~   63 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKK   63 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence            368999999999999999999987753

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=95.46  E-value=0.22  Score=59.18  Aligned_cols=81  Identities=15%  Similarity=0.197  Sum_probs=52.2

Q ss_pred             HhhccC-CCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC------CCCCChhhhccceEee--c
Q psy4730         890 ILDDLN-MPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------MNTITGRLLRHMNIIS--I  960 (1513)
Q Consensus       890 ~~dd~n-~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------~~~~~~r~~~~f~~~~--~  960 (1513)
                      |+|++. ||.       ....-|-++++.|.+...+.... .-.|+++|+|++.+      .....+.|+.|.+++.  +
T Consensus       227 fldei~~l~~-------~~Q~~Ll~~l~~~~~~~~g~~~~-~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~l  298 (368)
T 3dzd_A          227 FLDEVGELDQ-------RVQAKLLRVLETGSFTRLGGNQK-IEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYL  298 (368)
T ss_dssp             EEETGGGSCH-------HHHHHHHHHHHHSEECCBTCCCB-EECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEEC
T ss_pred             EecChhhCCH-------HHHHHHHHHHHhCCcccCCCCcc-eeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeC
Confidence            457766 433       23455556667777765554322 34599999999986      4567778888888755  6


Q ss_pred             CCCCh--HHHHHHHHHHhhh
Q psy4730         961 DSFNE--ATLSKIFTSVLDW  978 (1513)
Q Consensus       961 ~~~~~--~~l~~i~~~~l~~  978 (1513)
                      ++...  +++..+...++..
T Consensus       299 PpLreR~~Di~~l~~~~l~~  318 (368)
T 3dzd_A          299 PPLRERGKDVILLAEYFLKK  318 (368)
T ss_dssp             CCGGGSTTHHHHHHHHHHHH
T ss_pred             CChhhchhhHHHHHHHHHHH
Confidence            66555  5777777666554

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=95.43  E-value=0.053  Score=65.18  Aligned_cols=46  Identities=7%  Similarity=0.211  Sum_probs=31.1

Q ss_pred             ceEEEEeecCC--CCCCC---hhhhccceE-eecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPT--MNTIT---GRLLRHMNI-ISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~--~~~~~---~r~~~~f~~-~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+.++++.+.+  ...+.   +++.++|.. +.+++++.+++..++...+..
T Consensus       179 ~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~  230 (412)
T 1w5s_A          179 RIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAEL  230 (412)
T ss_dssp             BEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             eEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHh
Confidence            56677777543  22344   555555433 899999999999999876654

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.34  E-value=0.0067  Score=66.50  Aligned_cols=25  Identities=24%  Similarity=0.367  Sum_probs=22.3

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|+|+|||||||||..+.|++.++
T Consensus        30 kiI~llGpPGsGKgTqa~~L~~~~g   54 (217)
T 3umf_A           30 KVIFVLGGPGSGKGTQCEKLVQKFH   54 (217)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHC
Confidence            4678899999999999999998875

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=95.31  E-value=0.027  Score=67.55  Aligned_cols=116  Identities=16%  Similarity=0.215  Sum_probs=81.6

Q ss_pred             HHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCC---CCCCcc
Q psy4730        1347 MILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSA---SHEWRD 1419 (1513)
Q Consensus      1347 ~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~---t~eW~D 1419 (1513)
                      ......+|++.|++|+|||++.+.+.....+-           ...+..+|+.+++    -++|||+-.-.   ...+..
T Consensus       156 ~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~-----------~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~  224 (387)
T 1ny5_A          156 ISCAECPVLITGESGVGKEVVARLIHKLSDRS-----------KEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKE  224 (387)
T ss_dssp             HTTCCSCEEEECSTTSSHHHHHHHHHHHSTTT-----------TSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBC
T ss_pred             hcCCCCCeEEecCCCcCHHHHHHHHHHhcCCC-----------CCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccC
Confidence            34556799999999999999988887653321           1356789999988    56899963211   112566


Q ss_pred             CHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeec
Q psy4730        1420 GILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE 1485 (1513)
Q Consensus      1420 G~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~ 1485 (1513)
                      |.|..+          ..-.+++|  |.+++..-..|-.+|++...-  +.|..-..+.++|+|+-|.
T Consensus       225 g~~~~a----------~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~rii~at~  280 (387)
T 1ny5_A          225 GFFELA----------DGGTLFLDEIGELSLEAQAKLLRVIESGKFY--RLGGRKEIEVNVRILAATN  280 (387)
T ss_dssp             CHHHHT----------TTSEEEEESGGGCCHHHHHHHHHHHHHSEEC--CBTCCSBEECCCEEEEEES
T ss_pred             CceeeC----------CCcEEEEcChhhCCHHHHHHHHHHHhcCcEE--eCCCCceeeccEEEEEeCC
Confidence            766532          12588899  788999999999999876543  3455555667899998774

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.28  E-value=0.083  Score=62.18  Aligned_cols=45  Identities=16%  Similarity=0.175  Sum_probs=36.0

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      +..++.+++.+. .+.+.+.+|+..+.+.+|+.+++..+...++..
T Consensus       164 ~~~~Il~t~~~~-~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~  208 (354)
T 1sxj_E          164 NIRLIMVCDSMS-PIIAPIKSQCLLIRCPAPSDSEISTILSDVVTN  208 (354)
T ss_dssp             TEEEEEEESCSC-SSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCHH-HHHHHHHhhceEEecCCcCHHHHHHHHHHHHHH
Confidence            456666666543 478889999999999999999999998887653

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.26  E-value=0.011  Score=71.41  Aligned_cols=33  Identities=30%  Similarity=0.412  Sum_probs=26.8

Q ss_pred             HHHHHH--hcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1344 VYEMIL--VRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1344 L~~~~~--~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      +|....  ..+||+|+||||||||++.+++|..++
T Consensus       197 ~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~  231 (428)
T 4b4t_K          197 LYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK  231 (428)
T ss_dssp             HHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred             HHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            444433  346999999999999999999998875

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=95.22  E-value=0.011  Score=65.16  Aligned_cols=24  Identities=21%  Similarity=0.355  Sum_probs=21.7

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|+|.|++||||||+.+.|++.++
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg   25 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYS   25 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            378999999999999999998875

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.22  E-value=0.012  Score=71.06  Aligned_cols=26  Identities=23%  Similarity=0.236  Sum_probs=23.7

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .+||+|+||||||||++.+++|..++
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e~~  240 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQTN  240 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHHhC
Confidence            46999999999999999999998765

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.22  E-value=0.011  Score=71.38  Aligned_cols=34  Identities=18%  Similarity=0.396  Sum_probs=27.3

Q ss_pred             HHHHHHHh--cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1343 QVYEMILV--RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1343 qL~~~~~~--~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ++|.....  ..||+|+||||||||++.+++|..++
T Consensus       205 ~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~  240 (437)
T 4b4t_L          205 EIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG  240 (437)
T ss_dssp             HHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             HHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            34544433  46999999999999999999998775

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=95.09  E-value=0.029  Score=63.43  Aligned_cols=28  Identities=21%  Similarity=0.318  Sum_probs=23.8

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      ...-+.|+||+||||||+++.|+..+..
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~   51 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMIDYINQ   51 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence            3446899999999999999999987753

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.09  E-value=0.012  Score=70.00  Aligned_cols=130  Identities=20%  Similarity=0.334  Sum_probs=71.1

Q ss_pred             HHHHHHHh--cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccC
Q psy4730        1343 QVYEMILV--RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDG 1420 (1513)
Q Consensus      1343 qL~~~~~~--~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG 1420 (1513)
                      ++|+....  ..||+|+||||||||++.+++|...+              ..+..+++.     ++++.|-        |
T Consensus       172 e~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~--------------~~f~~v~~s-----~l~sk~v--------G  224 (405)
T 4b4t_J          172 ELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD--------------CKFIRVSGA-----ELVQKYI--------G  224 (405)
T ss_dssp             HHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT--------------CEEEEEEGG-----GGSCSST--------T
T ss_pred             HHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC--------------CCceEEEhH-----Hhhcccc--------c
Confidence            35555444  46999999999999999999998765              345555543     3333321        2


Q ss_pred             HHHHHHHHhhcc-CCCCceEEEEcC-----CC--------ChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecC
Q psy4730        1421 ILAKTFREMAVS-TTPDRKWIMFDG-----PI--------DAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN 1486 (1513)
Q Consensus      1421 ~l~~~lR~~~~~-~~~~~~WivfDG-----~~--------d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~ 1486 (1513)
                      --.+.+|+.... ....+.-|.||.     +-        +...--.+|.+|.      --+|  +.-.+++.+|..|..
T Consensus       225 ese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~------~lDg--~~~~~~V~vIaATNr  296 (405)
T 4b4t_J          225 EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLN------QLDG--FETSKNIKIIMATNR  296 (405)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHH------HHHT--TTCCCCEEEEEEESC
T ss_pred             hHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHH------hhhc--cCCCCCeEEEeccCC
Confidence            224445543211 112345566672     10        1111122344431      1111  111345677888888


Q ss_pred             CCCCCcchhh--ccE-EEEeeCCC
Q psy4730        1487 LEFASPATVS--RVG-MIYFELKC 1507 (1513)
Q Consensus      1487 l~~asPatvs--Rcg-~v~~~~~~ 1507 (1513)
                      ....-||..-  |.- .|+++.-+
T Consensus       297 pd~LDpAllRpGRfD~~I~i~lPd  320 (405)
T 4b4t_J          297 LDILDPALLRPGRIDRKIEFPPPS  320 (405)
T ss_dssp             SSSSCHHHHSTTSSCCEEECCCCC
T ss_pred             hhhCCHhHcCCCcCceEEEcCCcC
Confidence            8888899874  653 56665443

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=95.08  E-value=0.05  Score=63.07  Aligned_cols=55  Identities=15%  Similarity=0.194  Sum_probs=38.0

Q ss_pred             HHHHHHhc--ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC
Q psy4730        1344 VYEMILVR--HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT 1402 (1513)
Q Consensus      1344 L~~~~~~~--~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t 1402 (1513)
                      |..++...  .+++|.||||+|||++++.+++.+..-....    +...+.+..||+..++
T Consensus        36 L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~----~~~~~~~v~INc~~~~   92 (318)
T 3te6_A           36 IYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARK----ELPIFDYIHIDALELA   92 (318)
T ss_dssp             HHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTT----SSCCEEEEEEETTCCC
T ss_pred             HHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhc----cCCceEEEEEeccccC
Confidence            44444433  4799999999999999999998886532111    1113567788887766

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.00  E-value=0.027  Score=63.27  Aligned_cols=27  Identities=26%  Similarity=0.412  Sum_probs=23.7

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ...||+|+|||||||||+.+.++..++
T Consensus        44 ~~~~vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           44 IPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence            356999999999999999999987653

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=94.91  E-value=0.01  Score=62.79  Aligned_cols=27  Identities=26%  Similarity=0.546  Sum_probs=23.6

Q ss_pred             cCCccceeccCCCccchHhHHHHHhcc
Q psy4730         727 QNDVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       727 ~~~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      ..+++++|+||+|||||++++.+...+
T Consensus        36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           36 EEGKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             GGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            567899999999999999999887654

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.87  E-value=0.025  Score=68.27  Aligned_cols=34  Identities=18%  Similarity=0.295  Sum_probs=27.4

Q ss_pred             HHHHHHH--hcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1343 QVYEMIL--VRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1343 qL~~~~~--~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ++|..+.  ..+||+|+||||||||++.+++|..++
T Consensus       233 e~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~  268 (467)
T 4b4t_H          233 ERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD  268 (467)
T ss_dssp             HHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred             HHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence            3455443  457999999999999999999998765

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=94.84  E-value=0.029  Score=62.10  Aligned_cols=27  Identities=22%  Similarity=0.185  Sum_probs=23.6

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      ..-|.+.|++||||||..+.|++.++.
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            346889999999999999999998864

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=94.83  E-value=0.098  Score=63.08  Aligned_cols=134  Identities=17%  Similarity=0.216  Sum_probs=87.0

Q ss_pred             CCccccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccccceEEecCceEEEEEecCCCCC-------CCCCchhHH
Q psy4730        1122 PGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPGYAG-------RTELPDNLK 1194 (1513)
Q Consensus      1122 ~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g~~i~~~p~~~iFiTmNp~y~g-------r~~LP~nLk 1194 (1513)
                      .|.-+|+||||+++..+++++       ..++.++.-.  ..|.  .++..|.+.+|+||-+..       ...||+.+-
T Consensus       300 dgGvl~lDEIn~~~~~~qsaL-------lEaMEe~~Vt--I~G~--~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alL  368 (506)
T 3f8t_A          300 DGGILAVDHLEGAPEPHRWAL-------MEAMDKGTVT--VDGI--ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFL  368 (506)
T ss_dssp             TTSEEEEECCTTCCHHHHHHH-------HHHHHHSEEE--ETTE--EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHH
T ss_pred             CCCeeehHhhhhCCHHHHHHH-------HHHHhCCcEE--ECCE--EcCCCeEEEEEeCcccccCCCCCccccCCChHHh
Confidence            567789999999999998766       4555555433  3366  888999999999995411       128999999


Q ss_pred             hhhhcccc--cCCC-------------hHHHHHHHHHhc----CccchHHHHHHHHHHHHHHHhhcc-----CCCCCCcc
Q psy4730        1195 VLFRSVAM--MVPD-------------YAMIGEISLYSM----GFQNAKILAEKIVYTYKLCSEQLS-----SQSHYDYG 1250 (1513)
Q Consensus      1195 ~lFR~v~~--~~PD-------------~~~I~ei~L~~~----GF~~a~~la~ki~~~~~l~~~~ls-----~q~~yd~g 1250 (1513)
                      ++|--+..  ..||             ...+.+...++.    .-.-+......|+.+|...+..-.     ....+-.+
T Consensus       369 DRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giS  448 (506)
T 3f8t_A          369 SHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVT  448 (506)
T ss_dssp             TTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             hheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCccccccccccccccc
Confidence            99943322  2332             234444444444    233445667788888887765211     11345567


Q ss_pred             hhhHHHHHHHhhhhhh
Q psy4730        1251 MRAVKSVLNAAGSLKI 1266 (1513)
Q Consensus      1251 lR~lk~vl~~a~~l~~ 1266 (1513)
                      -|++.++++.|....+
T Consensus       449 pR~leaLiRlA~A~A~  464 (506)
T 3f8t_A          449 RRQLESVERLAKAHAR  464 (506)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7999999998865543

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=94.82  E-value=0.043  Score=65.14  Aligned_cols=27  Identities=19%  Similarity=0.282  Sum_probs=23.7

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .+.++|+||+|+||||+++.+++.+..
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~~~~   71 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSKLHK   71 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            458999999999999999999887653

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.76  E-value=0.019  Score=68.57  Aligned_cols=128  Identities=19%  Similarity=0.294  Sum_probs=70.3

Q ss_pred             HHHHHHh--cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCH
Q psy4730        1344 VYEMILV--RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGI 1421 (1513)
Q Consensus      1344 L~~~~~~--~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~ 1421 (1513)
                      +|.....  ..||+|+||||||||++.+++|..++              ..+..++..     ++++.|-        |-
T Consensus       207 ~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~--------------~~fi~v~~s-----~l~sk~v--------Ge  259 (437)
T 4b4t_I          207 LYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS--------------ATFLRIVGS-----ELIQKYL--------GD  259 (437)
T ss_dssp             HHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT--------------CEEEEEESG-----GGCCSSS--------SH
T ss_pred             HHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC--------------CCEEEEEHH-----HhhhccC--------ch
Confidence            4554444  46999999999999999999998765              345555543     3333332        22


Q ss_pred             HHHHHHHhhcc-CCCCceEEEEcC-----C--------CChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCC
Q psy4730        1422 LAKTFREMAVS-TTPDRKWIMFDG-----P--------IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL 1487 (1513)
Q Consensus      1422 l~~~lR~~~~~-~~~~~~WivfDG-----~--------~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l 1487 (1513)
                      -.+.+|..... ....+.-|.||.     .        -+...--.++.+|+.      .+|  +.-.+++-+|..|...
T Consensus       260 sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~------lDg--~~~~~~ViVIaATNrp  331 (437)
T 4b4t_I          260 GPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ------LDG--FDDRGDVKVIMATNKI  331 (437)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHH------HHH--CCCSSSEEEEEEESCS
T ss_pred             HHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHH------hhC--cCCCCCEEEEEeCCCh
Confidence            24445543210 112335666661     0        011222233333310      011  1223456778888888


Q ss_pred             CCCCcchhh--ccE-EEEeeCC
Q psy4730        1488 EFASPATVS--RVG-MIYFELK 1506 (1513)
Q Consensus      1488 ~~asPatvs--Rcg-~v~~~~~ 1506 (1513)
                      ...=||.+-  |.- .|+++.-
T Consensus       332 d~LDpALlRpGRfD~~I~v~lP  353 (437)
T 4b4t_I          332 ETLDPALIRPGRIDRKILFENP  353 (437)
T ss_dssp             TTCCTTSSCTTTEEEEECCCCC
T ss_pred             hhcCHHHhcCCceeEEEEcCCc
Confidence            888888874  665 3555543

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=94.60  E-value=0.24  Score=55.69  Aligned_cols=67  Identities=12%  Similarity=0.114  Sum_probs=41.7

Q ss_pred             hHHHHHHHHhcCCc-cccCCceeeeecceEEEEeecCC--C--------CCCChhhhccceEeecC--------CCChHH
Q psy4730         907 AVELLRQIIDHKHL-YDFQTVTRVDLVDIIYITAMIPT--M--------NTITGRLLRHMNIISID--------SFNEAT  967 (1513)
Q Consensus       907 ~le~lr~~~~~~~~-yd~~~~~~~~~~~~~~~~a~~~~--~--------~~~~~r~~~~f~~~~~~--------~~~~~~  967 (1513)
                      ..+.+|.+++.+.. .|.+...-..+....++.++|..  +        ....+.|.+|..++..+        +.+.++
T Consensus       163 ~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~  242 (267)
T 1u0j_A          163 VVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQE  242 (267)
T ss_dssp             THHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEEEECCSCCCTTSCCCCHHH
T ss_pred             HHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhEEEEECCCcCCcccCCCCHHH
Confidence            34667888765443 35443333466777888888863  2        25567899999999988        566666


Q ss_pred             HHHHHH
Q psy4730         968 LSKIFT  973 (1513)
Q Consensus       968 l~~i~~  973 (1513)
                      ....|.
T Consensus       243 ~~~f~~  248 (267)
T 1u0j_A          243 VKDFFR  248 (267)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666665

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=94.44  E-value=0.12  Score=63.82  Aligned_cols=25  Identities=28%  Similarity=0.376  Sum_probs=22.5

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..||+|+||||||||++.++++...
T Consensus        64 p~GvLL~GppGtGKTtLaraIa~~~   88 (499)
T 2dhr_A           64 PKGVLLVGPPGVGKTHLARAVAGEA   88 (499)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998764

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=94.41  E-value=0.046  Score=69.55  Aligned_cols=36  Identities=22%  Similarity=0.272  Sum_probs=30.7

Q ss_pred             HHHHHHhcCCccceeccCCCccchHhHHHHHhccCc
Q psy4730         720 FFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSK  755 (1513)
Q Consensus       720 ~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~  755 (1513)
                      ..++..+..+.+++|+||+|||||++++.+...+..
T Consensus        51 ~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~   86 (604)
T 3k1j_A           51 EVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT   86 (604)
T ss_dssp             HHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred             hhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence            456667888999999999999999999999876643

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=94.41  E-value=0.051  Score=60.27  Aligned_cols=26  Identities=27%  Similarity=0.379  Sum_probs=23.6

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .-|.+.|++||||||.++.|++.+..
T Consensus        28 ~~i~~eG~~GsGKsT~~~~l~~~l~~   53 (236)
T 3lv8_A           28 KFIVIEGLEGAGKSTAIQVVVETLQQ   53 (236)
T ss_dssp             CEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            46899999999999999999998875

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=94.41  E-value=0.06  Score=64.07  Aligned_cols=28  Identities=21%  Similarity=0.318  Sum_probs=23.9

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      ...-|.|+|||||||||+++.|+..+..
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~  162 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDYINQ  162 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence            3446899999999999999999987754

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=94.40  E-value=0.046  Score=61.43  Aligned_cols=51  Identities=18%  Similarity=0.234  Sum_probs=32.9

Q ss_pred             HHHHHHHHcCccccHHHHHHHHHHHHHHHh----cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1321 QIKINLAKRNAQATDWYIEKIIQVYEMILV----RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1321 ~i~~~~~~~~l~~~~~~~~k~~qL~~~~~~----~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      .|.+-+...|+.+  ..+.+.  |+.-+..    +.+++|.||||+|||.+.++|+..+
T Consensus        74 ~i~~~l~~qg~~~--~~~~~~--l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A           74 RIYKILELNGYDP--QYAASV--FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             HHHHHHHHTTCCH--HHHHHH--HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCCH--HHHHHH--HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence            3455556666542  222222  3333333    4589999999999999999998653

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=94.40  E-value=0.012  Score=71.92  Aligned_cols=27  Identities=22%  Similarity=0.272  Sum_probs=23.9

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .++++|+||+|+||||+.+.++..+..
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~  156 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ  156 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            468999999999999999999987753

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=94.37  E-value=0.0098  Score=71.63  Aligned_cols=70  Identities=11%  Similarity=0.066  Sum_probs=46.3

Q ss_pred             HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC-C---------CCCChhhhccceE-
Q psy4730         889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT-M---------NTITGRLLRHMNI-  957 (1513)
Q Consensus       889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~-~---------~~~~~r~~~~f~~-  957 (1513)
                      +|+||+|.-..+      ..+-|++.++.|.+.-.+ .  ..-.++.++|||||- +         ..+|+.++.||-+ 
T Consensus       304 l~lDEIn~~~~~------~qsaLlEaMEe~~VtI~G-~--~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi  374 (506)
T 3f8t_A          304 LAVDHLEGAPEP------HRWALMEAMDKGTVTVDG-I--ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLI  374 (506)
T ss_dssp             EEEECCTTCCHH------HHHHHHHHHHHSEEEETT-E--EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEE
T ss_pred             eehHhhhhCCHH------HHHHHHHHHhCCcEEECC-E--EcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheeeE
Confidence            677999944322      578889999987664322 2  444599999999996 2         2899999999955 


Q ss_pred             -eecCCCChHH
Q psy4730         958 -ISIDSFNEAT  967 (1513)
Q Consensus       958 -~~~~~~~~~~  967 (1513)
                       +.+++|+.+.
T Consensus       375 ~i~~d~pd~e~  385 (506)
T 3f8t_A          375 AFLGVDPRPGE  385 (506)
T ss_dssp             EETTC------
T ss_pred             EEecCCCChhH
Confidence             4477777654

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=94.17  E-value=0.017  Score=60.41  Aligned_cols=25  Identities=32%  Similarity=0.442  Sum_probs=22.5

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|.|+|++||||||+.+.|+..++
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999998765

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=94.16  E-value=0.02  Score=61.19  Aligned_cols=24  Identities=25%  Similarity=0.325  Sum_probs=21.3

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ++|+|+||||+||||+++.|.+..
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            689999999999999999987654

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=94.15  E-value=0.019  Score=59.87  Aligned_cols=24  Identities=21%  Similarity=0.200  Sum_probs=21.8

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|+|.|++||||||+.+.|++.++
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~   26 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELK   26 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999998765

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=94.11  E-value=0.022  Score=61.53  Aligned_cols=26  Identities=23%  Similarity=0.290  Sum_probs=22.3

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ...+.|+||+||||||+++.|...+.
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            45799999999999999999987653

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=94.06  E-value=0.022  Score=60.34  Aligned_cols=25  Identities=24%  Similarity=0.292  Sum_probs=21.9

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+.|+|||||||||+++.|+..+
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3578999999999999999998764

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=94.06  E-value=0.042  Score=59.15  Aligned_cols=26  Identities=15%  Similarity=0.204  Sum_probs=23.2

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ++++++.||||+||||.+..|++.+.
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45899999999999999999988763

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=93.92  E-value=0.018  Score=65.70  Aligned_cols=28  Identities=21%  Similarity=0.306  Sum_probs=23.9

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ....|++|+|||||||||+.++++..++
T Consensus        42 ~~~~GvlL~Gp~GtGKTtLakala~~~~   69 (274)
T 2x8a_A           42 VTPAGVLLAGPPGCGKTLLAKAVANESG   69 (274)
T ss_dssp             CCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence            3457999999999999999999987643

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=93.92  E-value=0.042  Score=61.75  Aligned_cols=24  Identities=21%  Similarity=0.239  Sum_probs=21.7

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|+|+|||||||||+.+.|++.++
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~   26 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETG   26 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCC
Confidence            588999999999999999998765

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=93.90  E-value=0.045  Score=61.29  Aligned_cols=26  Identities=27%  Similarity=0.401  Sum_probs=23.0

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ...|++|+|||||||||+.++++..+
T Consensus        48 ~~~g~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           48 IPKGVLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999998765

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=93.82  E-value=0.072  Score=58.54  Aligned_cols=25  Identities=32%  Similarity=0.305  Sum_probs=22.5

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      -|.+.|++||||||..+.|++.+..
T Consensus        23 ~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           23 FITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhh
Confidence            5777899999999999999999875

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=93.74  E-value=0.069  Score=57.43  Aligned_cols=25  Identities=32%  Similarity=0.376  Sum_probs=23.1

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .+++|+||+|+|||++.+.++..+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~   79 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELA   79 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            7999999999999999999988765

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=93.71  E-value=0.081  Score=56.94  Aligned_cols=55  Identities=9%  Similarity=0.044  Sum_probs=32.6

Q ss_pred             HHHHHHHhcCCc-cccCCceeeeecceEEEEeecCC--CCCCChhhhccceEeecCCC
Q psy4730         909 ELLRQIIDHKHL-YDFQTVTRVDLVDIIYITAMIPT--MNTITGRLLRHMNIISIDSF  963 (1513)
Q Consensus       909 e~lr~~~~~~~~-yd~~~~~~~~~~~~~~~~a~~~~--~~~~~~r~~~~f~~~~~~~~  963 (1513)
                      +.+|.++|.... -|.....-..+....+|.++|-+  ....-+++.+|..++..+.|
T Consensus       122 ~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f~F~~~  179 (212)
T 1tue_A          122 TYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEFPNA  179 (212)
T ss_dssp             HHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEEEECCSC
T ss_pred             HHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEEEEcCCC
Confidence            567777775432 23333333445566788888876  33445788888888777643

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=93.70  E-value=0.022  Score=59.97  Aligned_cols=25  Identities=24%  Similarity=0.327  Sum_probs=22.6

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|+|.|+|||||||+.+.|++.++
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4689999999999999999998765

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=93.70  E-value=0.028  Score=59.51  Aligned_cols=26  Identities=23%  Similarity=0.217  Sum_probs=23.2

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ...|+|+|++||||||+.+.|++.++
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~   30 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTK   30 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35799999999999999999998875

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=93.70  E-value=0.03  Score=59.45  Aligned_cols=24  Identities=29%  Similarity=0.443  Sum_probs=21.8

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -+.|+||+||||||+++.|+..+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            368999999999999999998885

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=93.67  E-value=0.031  Score=59.38  Aligned_cols=25  Identities=32%  Similarity=0.275  Sum_probs=23.0

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|+|.|++||||||+.+.|++.++
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999886

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=93.66  E-value=0.03  Score=60.34  Aligned_cols=26  Identities=27%  Similarity=0.254  Sum_probs=23.3

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ...|+|+|++||||||+.+.|++.++
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~~l~   50 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFARKLN   50 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            45799999999999999999998775

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=93.60  E-value=0.079  Score=57.85  Aligned_cols=97  Identities=15%  Similarity=0.236  Sum_probs=55.0

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhcccccc--CC---CCCC---ccCHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFD--SA---SHEW---RDGILA 1423 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~--~~---t~eW---~DG~l~ 1423 (1513)
                      .-|.+.|++||||||.++.|++.+...+-.        .+ ...=.|......+..-.+-  +.   ..++   .+.+|-
T Consensus         4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~--------~v-~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~   74 (213)
T 4tmk_A            4 KYIVIEGLEGAGKTTARNVVVETLEQLGIR--------DM-VFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMF   74 (213)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCC--------CE-EEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCC--------cc-eeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHH
Confidence            357889999999999999999988753210        12 3334566544333322221  11   1222   233333


Q ss_pred             HHHHHhhcc-----CCCCceEEEEc----------C---CCChHHHHhhhcc
Q psy4730        1424 KTFREMAVS-----TTPDRKWIMFD----------G---PIDAVWIENMNTV 1457 (1513)
Q Consensus      1424 ~~lR~~~~~-----~~~~~~WivfD----------G---~~d~~wiE~LNsv 1457 (1513)
                      .+-|.-...     .-...+|+|+|          |   .+|..|++.+|..
T Consensus        75 ~A~R~~~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~  126 (213)
T 4tmk_A           75 YAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDA  126 (213)
T ss_dssp             HHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHH
Confidence            333321100     01234899999          3   3578999999974

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=93.47  E-value=0.035  Score=59.87  Aligned_cols=26  Identities=31%  Similarity=0.190  Sum_probs=23.4

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..-|.|+||+||||||+.+.|+..+.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45688999999999999999999886

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=93.45  E-value=0.035  Score=59.01  Aligned_cols=25  Identities=24%  Similarity=0.203  Sum_probs=22.9

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      -|+|.|++||||||+.+.|++.++.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~~   27 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5899999999999999999998874

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=93.34  E-value=0.063  Score=61.06  Aligned_cols=26  Identities=27%  Similarity=0.401  Sum_probs=23.0

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ...||+|+|||||||||+.++++..+
T Consensus        72 ~~~gvll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           72 IPKGVLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCcChHHHHHHHHHHHc
Confidence            35689999999999999999998765

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=93.27  E-value=0.036  Score=60.90  Aligned_cols=37  Identities=22%  Similarity=0.138  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1340 KIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1340 k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      |+.+-+.-+.....+.|+||+||||||+++.|+..+.
T Consensus         5 ~~~~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A            5 KIHHHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             ----------CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             ccccccccCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            3333344455566899999999999999999987653

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=93.27  E-value=0.035  Score=59.82  Aligned_cols=24  Identities=25%  Similarity=0.411  Sum_probs=22.2

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|+|+|++||||||+.+.|++.++
T Consensus        20 ~I~l~G~~GsGKSTla~~L~~~lg   43 (202)
T 3t61_A           20 SIVVMGVSGSGKSSVGEAIAEACG   43 (202)
T ss_dssp             CEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            699999999999999999998874

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=93.25  E-value=0.036  Score=59.03  Aligned_cols=25  Identities=40%  Similarity=0.442  Sum_probs=22.6

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|+|+|++||||||+.+.|++.++
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~~l~   30 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALATGLR   30 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4689999999999999999998774

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=93.18  E-value=0.043  Score=59.58  Aligned_cols=26  Identities=31%  Similarity=0.383  Sum_probs=23.2

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..-|.|+||+||||||+.+.|+..+.
T Consensus        22 g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           22 RQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            44688999999999999999998876

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=93.17  E-value=0.038  Score=58.07  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=22.1

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|+|+|++||||||+.+.|++.++
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~   29 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLD   29 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC
Confidence            589999999999999999998875

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=93.17  E-value=0.038  Score=58.55  Aligned_cols=25  Identities=28%  Similarity=0.387  Sum_probs=22.4

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|+|+|++||||||+.+.|++.++
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~~l~   29 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQELG   29 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999998765

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=93.16  E-value=0.03  Score=59.58  Aligned_cols=24  Identities=29%  Similarity=0.356  Sum_probs=20.9

Q ss_pred             cceEEEeccCCCCchHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      ..-+.|+||+||||||+.+.|+..
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            346899999999999999999764

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=93.13  E-value=0.036  Score=59.66  Aligned_cols=25  Identities=24%  Similarity=0.316  Sum_probs=21.7

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+.|+||+||||||+++.|+..+
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhC
Confidence            3468899999999999999998764

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=93.04  E-value=0.094  Score=53.77  Aligned_cols=26  Identities=19%  Similarity=0.294  Sum_probs=22.9

Q ss_pred             CCccceeccCCCccchHhHHHHHhcc
Q psy4730         728 NDVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       728 ~~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      .+.++.|+||+|+|||++++.+...+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            68899999999999999999887644

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=93.03  E-value=0.042  Score=59.21  Aligned_cols=26  Identities=35%  Similarity=0.362  Sum_probs=22.8

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..-|.|+||+||||||+.+.|+..++
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~~~g   54 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVADETG   54 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence            34689999999999999999998774

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=92.96  E-value=0.041  Score=57.80  Aligned_cols=22  Identities=18%  Similarity=0.218  Sum_probs=20.1

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|+|+|+|||||||+.+.|++
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3589999999999999999987

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=92.94  E-value=0.043  Score=57.55  Aligned_cols=25  Identities=28%  Similarity=0.361  Sum_probs=22.1

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|.|+|++||||||+.+.|+..++
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~~~g   33 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAHQLH   33 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhhC
Confidence            4689999999999999999988764

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=92.93  E-value=0.042  Score=60.25  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=22.4

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|.|+||+||||||+.+.|++.++
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~g   30 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEALQ   30 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999998763

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=92.91  E-value=0.054  Score=55.61  Aligned_cols=27  Identities=22%  Similarity=0.150  Sum_probs=24.1

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ...++.|+||+||||||+.++++..+.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~   61 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQAL   61 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456899999999999999999998775

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=92.91  E-value=0.042  Score=58.02  Aligned_cols=25  Identities=28%  Similarity=0.267  Sum_probs=22.6

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..|+|+|++||||||+.+.|++.++
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~~~~   36 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELASKSG   36 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHhC
Confidence            4699999999999999999998774

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=92.88  E-value=0.036  Score=57.64  Aligned_cols=23  Identities=17%  Similarity=0.228  Sum_probs=19.7

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      .-|+|+|++||||||+.+.| +.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~   24 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KER   24 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHC
Confidence            35899999999999999999 444

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=92.87  E-value=0.061  Score=57.81  Aligned_cols=26  Identities=23%  Similarity=0.399  Sum_probs=22.7

Q ss_pred             ccceeccCCCccchHhHHHHHhccCc
Q psy4730         730 VPMMFVGPTGTGKSTIVLNLLLNLSK  755 (1513)
Q Consensus       730 ~~~ll~G~~g~GKt~~v~~~~~~~~~  755 (1513)
                      .+++|+||+|||||+++..+...+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~   80 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAK   80 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            79999999999999999988776543

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=92.86  E-value=0.042  Score=59.74  Aligned_cols=26  Identities=19%  Similarity=0.100  Sum_probs=22.1

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..-|.|+||+||||||+++.|+..+.
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            34689999999999999999987653

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=92.78  E-value=0.047  Score=56.98  Aligned_cols=25  Identities=32%  Similarity=0.337  Sum_probs=22.5

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|+|.|++||||||+.+.|++.++
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg   27 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALG   27 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC
Confidence            3589999999999999999998875

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=92.75  E-value=0.18  Score=54.19  Aligned_cols=24  Identities=33%  Similarity=0.336  Sum_probs=22.1

Q ss_pred             EEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      |.+.|.-||||||.++.|++.+..
T Consensus         3 I~~EG~DGsGKsTq~~~L~~~L~~   26 (197)
T 3hjn_A            3 ITFEGIDGSGKSTQIQLLAQYLEK   26 (197)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            678899999999999999999875

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=92.73  E-value=0.044  Score=61.20  Aligned_cols=26  Identities=23%  Similarity=0.275  Sum_probs=23.1

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .-|.|+||+||||||+.+.|++.++.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La~~lg~   53 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIAQNFGL   53 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            46999999999999999999987753

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=92.72  E-value=0.04  Score=59.62  Aligned_cols=27  Identities=26%  Similarity=0.199  Sum_probs=23.1

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ....|+|+|||||||||+.+.|++.+.
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            345789999999999999999988763

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=92.70  E-value=0.092  Score=64.38  Aligned_cols=25  Identities=24%  Similarity=0.341  Sum_probs=23.6

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ++++|.||||||||++.+.+++.++
T Consensus        64 ~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           64 RAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHhC
Confidence            6999999999999999999999886

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=92.68  E-value=0.051  Score=58.47  Aligned_cols=26  Identities=23%  Similarity=0.316  Sum_probs=22.5

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ...|+|+|||||||||+++.|++.+.
T Consensus        19 g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           19 RKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            45789999999999999999987653

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=92.58  E-value=0.048  Score=59.37  Aligned_cols=23  Identities=17%  Similarity=0.328  Sum_probs=21.1

Q ss_pred             EEEeccCCCCchHHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      |+|.|++||||||+.+.|++.++
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3fb4_A            3 IVLMGLPGAGKGTQAEQIIEKYE   25 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999988765

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=92.57  E-value=0.052  Score=57.43  Aligned_cols=24  Identities=33%  Similarity=0.350  Sum_probs=22.0

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|+|.|++||||||+.+.|++.++
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg   27 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKALG   27 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcC
Confidence            489999999999999999998775

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=92.52  E-value=0.049  Score=58.44  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=21.9

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|.|+|++||||||+.+.|++.++
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            478999999999999999998875

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=92.50  E-value=0.05  Score=59.09  Aligned_cols=24  Identities=29%  Similarity=0.263  Sum_probs=21.7

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|+|+|||||||+|..+.|++.++
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g   25 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG   25 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            378999999999999999998875

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=92.50  E-value=0.05  Score=58.58  Aligned_cols=25  Identities=20%  Similarity=0.134  Sum_probs=21.6

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-|.|+||+||||||+.+.|+..+
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3468899999999999999998765

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=92.49  E-value=0.051  Score=57.81  Aligned_cols=21  Identities=29%  Similarity=0.338  Sum_probs=19.3

Q ss_pred             eEEEeccCCCCchHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      -+.|+||+||||||+.+.|+.
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999999975

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=92.46  E-value=0.051  Score=57.77  Aligned_cols=25  Identities=20%  Similarity=0.263  Sum_probs=22.4

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|+|+|++||||||+.+.|++.++
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~~~~   28 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVEKYG   28 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3589999999999999999998765

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=92.44  E-value=0.056  Score=58.63  Aligned_cols=29  Identities=24%  Similarity=0.314  Sum_probs=23.4

Q ss_pred             HHhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1348 ILVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1348 ~~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      +....-+.|+||+||||||++++|+..+.
T Consensus        17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            44456789999999999999999987763

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=92.43  E-value=0.056  Score=58.55  Aligned_cols=24  Identities=38%  Similarity=0.415  Sum_probs=21.8

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|-|+||+||||||+.+.|+..++
T Consensus         8 ~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            8 VIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999998775

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=92.41  E-value=0.051  Score=59.55  Aligned_cols=25  Identities=20%  Similarity=0.318  Sum_probs=22.7

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|+|+|++||||||+.+.|++.++
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3589999999999999999998875

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=92.39  E-value=0.053  Score=59.41  Aligned_cols=27  Identities=26%  Similarity=0.189  Sum_probs=22.6

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      .....+.|+||+||||||+++.|+..+
T Consensus        21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           21 NNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            345579999999999999999998754

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=92.36  E-value=0.057  Score=58.13  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=22.0

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|+|+|++||||||+.+.|++.++
T Consensus        22 ~I~l~G~~GsGKST~a~~La~~l~   45 (201)
T 2cdn_A           22 RVLLLGPPGAGKGTQAVKLAEKLG   45 (201)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999998875

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=92.30  E-value=0.068  Score=62.52  Aligned_cols=29  Identities=24%  Similarity=0.373  Sum_probs=24.5

Q ss_pred             HHHhcceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1347 MILVRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1347 ~~~~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      .+..+.-+.|+||+||||||++++|+..+
T Consensus       167 ~i~~g~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          167 GIAIGKNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             HHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34567789999999999999999997654

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=92.29  E-value=0.06  Score=56.07  Aligned_cols=25  Identities=28%  Similarity=0.328  Sum_probs=22.8

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|.|.|++||||||+.+.|++.++
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg   32 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALK   32 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC
Confidence            3789999999999999999998876

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=92.25  E-value=0.072  Score=56.91  Aligned_cols=27  Identities=19%  Similarity=0.277  Sum_probs=23.8

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ...-|.|.|++||||||+.+.|++.++
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~   37 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKYG   37 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            345799999999999999999998875

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=92.24  E-value=0.061  Score=55.88  Aligned_cols=24  Identities=29%  Similarity=0.386  Sum_probs=21.9

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|+|.|++||||||+.+.|++.++
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~   25 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLN   25 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            489999999999999999998775

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=92.23  E-value=0.059  Score=61.16  Aligned_cols=24  Identities=46%  Similarity=0.455  Sum_probs=21.6

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -++|+||+||||||++++|+....
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~   27 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQV   27 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            589999999999999999987764

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=92.20  E-value=0.057  Score=57.29  Aligned_cols=25  Identities=20%  Similarity=0.304  Sum_probs=22.4

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|.|+|++||||||+.+.|++.++
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~~l~   31 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3689999999999999999998765

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=92.11  E-value=0.24  Score=62.33  Aligned_cols=92  Identities=12%  Similarity=0.156  Sum_probs=56.4

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEe--------------cCCCCChhhccccccCCCC
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKII--------------NPKSITMGQLYGEFDSASH 1415 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~i--------------np~~~t~~eL~G~~~~~t~ 1415 (1513)
                      .+..++|.|+|||||||++..++..+...+.           .+...              .-.+.|...++|.. + + 
T Consensus       203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~-----------~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~-~-~-  268 (574)
T 3e1s_A          203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGL-----------EVGLCAPTGKAARRLGEVTGRTASTVHRLLGYG-P-Q-  268 (574)
T ss_dssp             TCSEEEEECCTTSCHHHHHHHHHHHHHHTTC-----------CEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEE-T-T-
T ss_pred             hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCC-----------eEEEecCcHHHHHHhHhhhcccHHHHHHHHcCC-c-c-
Confidence            4678999999999999999999887764221           11222              12334455555532 1 1 


Q ss_pred             CCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCcee
Q psy4730        1416 EWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLC 1465 (1513)
Q Consensus      1416 eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~ 1465 (1513)
                      .|...          .........+|.|  +.+|..+.+.|-+.+.++..+.
T Consensus       269 ~~~~~----------~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~~~~~li  310 (574)
T 3e1s_A          269 GFRHN----------HLEPAPYDLLIVDEVSMMGDALMLSLLAAVPPGARVL  310 (574)
T ss_dssp             EESCS----------SSSCCSCSEEEECCGGGCCHHHHHHHHTTSCTTCEEE
T ss_pred             hhhhh----------hcccccCCEEEEcCccCCCHHHHHHHHHhCcCCCEEE
Confidence            11110          1122345799999  7889999888877776554333

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=92.10  E-value=0.049  Score=57.43  Aligned_cols=25  Identities=28%  Similarity=0.212  Sum_probs=18.3

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|+|.|++||||||+.+.|++.++
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHHHST
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4689999999999999999988765

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=92.08  E-value=0.069  Score=57.77  Aligned_cols=26  Identities=23%  Similarity=0.291  Sum_probs=23.5

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .-|.|.|++||||||+.+.|++.++.
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~~~l~~   36 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLVEYLKN   36 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999998864

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=92.02  E-value=0.061  Score=58.80  Aligned_cols=25  Identities=20%  Similarity=0.335  Sum_probs=22.4

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|+|+|++||||||+.+.|++.++
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~~l~   29 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQERFH   29 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3589999999999999999998875

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=92.01  E-value=0.055  Score=62.88  Aligned_cols=25  Identities=24%  Similarity=0.283  Sum_probs=22.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|+|+|||||||||+...||+.++
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHCC
Confidence            3699999999999999999997764

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=91.96  E-value=0.053  Score=59.08  Aligned_cols=23  Identities=22%  Similarity=0.315  Sum_probs=20.8

Q ss_pred             EEEeccCCCCchHHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      |+|.|++||||||+.+.|++.++
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3dl0_A            3 LVLMGLPGAGKGTQGERIVEKYG   25 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999987664

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=91.90  E-value=0.066  Score=64.78  Aligned_cols=26  Identities=23%  Similarity=0.310  Sum_probs=23.6

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .++|+|+||||||||++.+.||+.++
T Consensus        50 ~~~iLl~GppGtGKT~lar~lA~~l~   75 (444)
T 1g41_A           50 PKNILMIGPTGVGKTEIARRLAKLAN   75 (444)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHcC
Confidence            36899999999999999999998875

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=91.89  E-value=0.098  Score=55.69  Aligned_cols=31  Identities=16%  Similarity=0.259  Sum_probs=24.2

Q ss_pred             CceEEEEc--CCCChHHHHhhhcccCCCCceee
Q psy4730        1436 DRKWIMFD--GPIDAVWIENMNTVLDDNKKLCL 1466 (1513)
Q Consensus      1436 ~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L 1466 (1513)
                      ....|++|  ..+++.|++.|+.+.|++..+.+
T Consensus        76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~  108 (184)
T 2orw_A           76 DTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFC  108 (184)
T ss_dssp             TEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECcccCCHHHHHHHHHHHHCCCCEEE
Confidence            35789999  45678899999999988655544

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=91.84  E-value=0.076  Score=57.51  Aligned_cols=26  Identities=23%  Similarity=0.335  Sum_probs=23.5

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .-|+|+|++||||||+.+.|++.++.
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~~l~~   35 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVEALCA   35 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999998864

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=91.78  E-value=0.055  Score=59.50  Aligned_cols=25  Identities=16%  Similarity=0.254  Sum_probs=22.3

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|+|+|++||||||+.+.|++.++
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~~l~   32 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITTHFE   32 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4699999999999999999998764

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=91.71  E-value=0.076  Score=56.38  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=21.3

Q ss_pred             ceEEEeccCCCCchHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      .-|+|+|++||||||+.+.|++.
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            46999999999999999999987

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=91.70  E-value=0.083  Score=56.02  Aligned_cols=26  Identities=35%  Similarity=0.279  Sum_probs=23.4

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .-|+|+|++||||||+.+.|++.+..
T Consensus        14 ~~i~l~G~~GsGKsT~~~~L~~~l~~   39 (186)
T 2yvu_A           14 IVVWLTGLPGSGKTTIATRLADLLQK   39 (186)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            46899999999999999999998864

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=91.69  E-value=0.063  Score=60.22  Aligned_cols=26  Identities=38%  Similarity=0.369  Sum_probs=22.5

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..-|.|+||+||||||+.+.|++.++
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~~Lg   52 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAESLN   52 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence            34689999999999999999996654

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=91.58  E-value=0.071  Score=56.86  Aligned_cols=25  Identities=40%  Similarity=0.780  Sum_probs=22.4

Q ss_pred             CccceeccCCCccchHhHHHHHhcc
Q psy4730         729 DVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       729 ~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      .+|++|+||+|+|||++++.++...
T Consensus         1 ~RpIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            1 SRPIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhC
Confidence            3799999999999999999998754

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=91.57  E-value=0.28  Score=56.47  Aligned_cols=26  Identities=42%  Similarity=0.570  Sum_probs=23.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .-++|+||+||||||+++.|+..+..
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag~l~~  126 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAHRLKN  126 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            46889999999999999999988764

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=91.51  E-value=0.074  Score=57.88  Aligned_cols=23  Identities=22%  Similarity=0.430  Sum_probs=21.3

Q ss_pred             EEEeccCCCCchHHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      |+|.|++||||||+.+.|++.++
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~g   25 (214)
T 1e4v_A            3 IILLGAPVAGKGTQAQFIMEKYG   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999998774

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=91.49  E-value=0.11  Score=57.07  Aligned_cols=25  Identities=20%  Similarity=0.315  Sum_probs=22.1

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-.-|.|+|||||||..+.|++.++
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~~g   33 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEKFG   33 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cceeeECCCCCCHHHHHHHHHHHhC
Confidence            3677899999999999999998875

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=91.46  E-value=0.077  Score=55.03  Aligned_cols=24  Identities=21%  Similarity=0.221  Sum_probs=21.8

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      .-+.|+||.||||||++++++..+
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            358899999999999999999887

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=91.42  E-value=0.073  Score=55.86  Aligned_cols=20  Identities=25%  Similarity=0.283  Sum_probs=17.5

Q ss_pred             ceEEEeccCCCCchHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTL 1371 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L 1371 (1513)
                      .-+.|+||+||||||+.+.+
T Consensus        10 ei~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A           10 SLVVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             EEEEEECCTTSCHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            45889999999999999953

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=91.29  E-value=0.081  Score=57.79  Aligned_cols=24  Identities=21%  Similarity=0.362  Sum_probs=22.1

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|+|+|++||||||+.+.|++.++
T Consensus         7 ~I~l~G~~GsGKsT~a~~La~~l~   30 (217)
T 3be4_A            7 NLILIGAPGSGKGTQCEFIKKEYG   30 (217)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999998875

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=91.27  E-value=0.081  Score=60.62  Aligned_cols=24  Identities=17%  Similarity=0.295  Sum_probs=21.5

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..|+|.|||||||||+.+.|++.+
T Consensus        34 ~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           34 TAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            469999999999999999998765

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=91.25  E-value=0.07  Score=57.42  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=21.6

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|+|.|++||||||+.+.|++.++
T Consensus        17 ~I~l~G~~GsGKsT~~~~L~~~~g   40 (203)
T 1ukz_A           17 VIFVLGGPGAGKGTQCEKLVKDYS   40 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            589999999999999999998764

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=91.24  E-value=0.31  Score=59.51  Aligned_cols=26  Identities=31%  Similarity=0.350  Sum_probs=23.0

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .-++|+|++||||||+++.|+..+..
T Consensus       294 eVI~LVGpNGSGKTTLl~~LAgll~~  319 (503)
T 2yhs_A          294 FVILMVGVNGVGKTTTIGKLARQFEQ  319 (503)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCcccHHHHHHHHHHHhhh
Confidence            46899999999999999999987753

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=91.21  E-value=0.1  Score=55.90  Aligned_cols=24  Identities=25%  Similarity=0.303  Sum_probs=22.0

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -+.|+||+||||||+++.|+..+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhcc
Confidence            478999999999999999998875

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=91.18  E-value=0.071  Score=58.78  Aligned_cols=24  Identities=29%  Similarity=0.137  Sum_probs=15.4

Q ss_pred             ceEEEeccCCCCchHHHHHHH-HHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLA-DSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~-~~~ 1375 (1513)
                      .-+.|+||+||||||+++.|+ ..+
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC---
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCC
Confidence            458899999999999999998 765

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=91.14  E-value=0.091  Score=58.86  Aligned_cols=26  Identities=35%  Similarity=0.360  Sum_probs=23.8

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..-|.|+|++||||||+.+.|++.++
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg   73 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLG   73 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            56899999999999999999998775

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=91.11  E-value=0.098  Score=55.52  Aligned_cols=25  Identities=28%  Similarity=0.230  Sum_probs=22.2

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      -|.|.|++||||||+.+.|++.+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~   26 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQ   26 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3789999999999999999988753

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=91.11  E-value=0.14  Score=55.19  Aligned_cols=26  Identities=35%  Similarity=0.319  Sum_probs=22.8

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .-|.|+|++||||||+.+.|+..+..
T Consensus        23 ~~i~i~G~~GsGKstl~~~l~~~~~~   48 (201)
T 1rz3_A           23 LVLGIDGLSRSGKTTLANQLSQTLRE   48 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            35889999999999999999988753

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=91.11  E-value=0.15  Score=55.32  Aligned_cols=26  Identities=19%  Similarity=0.003  Sum_probs=23.0

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHH
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      ....-+.|+||+||||||++++|+..
T Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           20 DTNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            45667899999999999999999876

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=91.05  E-value=0.33  Score=57.14  Aligned_cols=26  Identities=42%  Similarity=0.570  Sum_probs=23.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .-++|+||+||||||+++.|+..+..
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag~l~~  183 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAHRLKN  183 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHhhccc
Confidence            46899999999999999999988764

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=91.00  E-value=0.058  Score=58.47  Aligned_cols=25  Identities=20%  Similarity=0.252  Sum_probs=22.5

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      -|.|+|++||||||+++.|++.+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            4789999999999999999988863

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=90.95  E-value=0.062  Score=56.56  Aligned_cols=26  Identities=35%  Similarity=0.336  Sum_probs=23.1

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      ..|.|+|++||||||+++.|+..+..
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~   28 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRE   28 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            46889999999999999999988764

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=90.95  E-value=0.091  Score=58.56  Aligned_cols=24  Identities=25%  Similarity=0.245  Sum_probs=21.9

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|+|.|+|||||||+.+.|++.++
T Consensus        31 ~I~l~G~~GsGKsT~a~~L~~~~g   54 (243)
T 3tlx_A           31 RYIFLGAPGSGKGTQSLNLKKSHC   54 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            599999999999999999998764

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=90.90  E-value=0.11  Score=54.76  Aligned_cols=25  Identities=32%  Similarity=0.307  Sum_probs=22.4

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|.|+|++||||||+.+.|++.+.
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~~l~   30 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEEYLV   30 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4688999999999999999998874

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=90.88  E-value=0.1  Score=57.74  Aligned_cols=25  Identities=24%  Similarity=0.279  Sum_probs=22.7

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|+|+|++||||||+.+.|++.++
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~l~   41 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKNFC   41 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3699999999999999999998875

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=90.83  E-value=0.11  Score=60.02  Aligned_cols=26  Identities=31%  Similarity=0.321  Sum_probs=23.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .-|.|+||+||||||+++.|+..+..
T Consensus       103 ~vi~lvG~nGsGKTTll~~Lagll~~  128 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLGRYYQN  128 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            47899999999999999999988764

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=90.75  E-value=0.12  Score=64.05  Aligned_cols=31  Identities=29%  Similarity=0.394  Sum_probs=25.5

Q ss_pred             HHHHHhcceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1345 YEMILVRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1345 ~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..++..+..++|+|||||||||++++|+..+
T Consensus       254 ~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          254 WLAIEHKFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             HHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             HHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3445667789999999999999999987654

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=90.71  E-value=0.21  Score=54.02  Aligned_cols=24  Identities=25%  Similarity=0.214  Sum_probs=21.5

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      =|.+.|+-||||||.++.|++.+.
T Consensus         4 FI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            4 FITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHH
Confidence            377889999999999999999884

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=90.69  E-value=0.12  Score=57.21  Aligned_cols=26  Identities=27%  Similarity=0.240  Sum_probs=22.9

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..-|.|.||+||||||+.+.|++.++
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~lg   34 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARALG   34 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            44699999999999999999998764

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=90.64  E-value=0.12  Score=56.09  Aligned_cols=26  Identities=27%  Similarity=0.272  Sum_probs=23.3

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..-|+|+|++||||||+.+.|++.+.
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34688999999999999999999886

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=90.61  E-value=0.19  Score=52.95  Aligned_cols=27  Identities=30%  Similarity=0.122  Sum_probs=23.3

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      ...+.++|++||||||+++.|...+..
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~   32 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCA   32 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence            357899999999999999999887653

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=90.58  E-value=0.091  Score=56.69  Aligned_cols=21  Identities=29%  Similarity=0.213  Sum_probs=19.4

Q ss_pred             eEEEeccCCCCchHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      -|.|+|++||||||+.+.|++
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999986

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=90.58  E-value=0.1  Score=56.05  Aligned_cols=22  Identities=27%  Similarity=0.312  Sum_probs=20.2

Q ss_pred             eEEEeccCCCCchHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      -|.|+|++||||||+.+.|++ +
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~   24 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-L   24 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-T
T ss_pred             EEEEECCCCcCHHHHHHHHHH-C
Confidence            488999999999999999998 5

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=90.50  E-value=0.11  Score=59.78  Aligned_cols=28  Identities=25%  Similarity=0.319  Sum_probs=24.6

Q ss_pred             HHhcceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1348 ILVRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1348 ~~~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      +....-+.|+||+||||||++++|+..+
T Consensus       123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            4455679999999999999999999887

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=90.48  E-value=0.089  Score=58.37  Aligned_cols=25  Identities=20%  Similarity=0.135  Sum_probs=21.2

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+.|+||+||||||++++|+..+
T Consensus        31 Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           31 GEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3468899999999999999997554

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=90.42  E-value=0.11  Score=55.68  Aligned_cols=24  Identities=25%  Similarity=0.310  Sum_probs=21.8

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      .-|.|+|++||||||+.+.|++.+
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHH
Confidence            458999999999999999999876

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=90.41  E-value=0.13  Score=58.85  Aligned_cols=40  Identities=13%  Similarity=0.207  Sum_probs=29.7

Q ss_pred             cceEeecCCCChHHHHHHHHHHhhhhhhccchhHHHHHHH
Q psy4730         954 HMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSK  993 (1513)
Q Consensus       954 ~f~~~~~~~~~~~~l~~i~~~~l~~~~~~~f~~~~~~~~~  993 (1513)
                      .+..+.+..++.+.|..=+..-++.|+..|+.++++.+..
T Consensus       196 ~~~~i~L~~~~R~~L~~RI~~Rvd~Ml~~Gl~eEv~~L~~  235 (316)
T 3foz_A          196 QVHQFAIAPASRELLHQRIEQRFHQMLASGFEAEVRALFA  235 (316)
T ss_dssp             EEEEEEEECSSHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             ceEEEEecCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            3455677766788888777777788888888888887643

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=90.37  E-value=0.082  Score=59.29  Aligned_cols=25  Identities=24%  Similarity=0.286  Sum_probs=22.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|+|+|+|||||||+.+.|++.++
T Consensus        33 ~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           33 IAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             EEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4689999999999999999987764

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=90.32  E-value=0.58  Score=59.34  Aligned_cols=29  Identities=28%  Similarity=0.311  Sum_probs=25.2

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDI 1378 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l 1378 (1513)
                      .+.-+++.|+|||||||++..+..++..+
T Consensus       163 ~~~~~vi~G~pGTGKTt~l~~ll~~l~~~  191 (608)
T 1w36_D          163 TRRISVISGGPGTGKTTTVAKLLAALIQM  191 (608)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHHHHHHHHT
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence            46789999999999999999998888754

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=90.07  E-value=0.2  Score=57.85  Aligned_cols=26  Identities=27%  Similarity=0.402  Sum_probs=23.8

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..+++|.||||+|||++.+.++..+.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            57999999999999999999998775

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=90.01  E-value=0.14  Score=59.36  Aligned_cols=26  Identities=27%  Similarity=0.230  Sum_probs=23.0

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .-|-|+||+||||||+.+.|+..+..
T Consensus        91 ~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           91 FIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCchHHHHHHHHHhhccc
Confidence            45889999999999999999988764

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=89.92  E-value=0.15  Score=60.34  Aligned_cols=30  Identities=27%  Similarity=0.422  Sum_probs=25.4

Q ss_pred             HHHhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1347 MILVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1347 ~~~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .+..+.-+.|+|||||||||++++|+..+.
T Consensus       171 ~i~~G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          171 AVQLERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             HHHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             HHhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            456677899999999999999999976553

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=89.90  E-value=0.14  Score=59.61  Aligned_cols=27  Identities=37%  Similarity=0.362  Sum_probs=23.8

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      ..-++|+||+||||||+++.|+..+..
T Consensus       129 g~vi~lvG~nGaGKTTll~~Lag~l~~  155 (328)
T 3e70_C          129 PYVIMFVGFNGSGKTTTIAKLANWLKN  155 (328)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            357899999999999999999988764

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=89.87  E-value=0.2  Score=59.54  Aligned_cols=28  Identities=25%  Similarity=0.165  Sum_probs=24.1

Q ss_pred             HHhcceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1348 ILVRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1348 ~~~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      +..+..+.|+||+||||||+.+.|+..+
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4456789999999999999999999754

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=89.75  E-value=0.18  Score=52.75  Aligned_cols=26  Identities=27%  Similarity=0.274  Sum_probs=23.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      ..+.++|++||||||++..|+..+..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~   30 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVR   30 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence            46889999999999999999988764

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=89.74  E-value=0.24  Score=57.98  Aligned_cols=26  Identities=23%  Similarity=0.385  Sum_probs=23.6

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      ..|+|+|++||||||+.+.|++.++.
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~~l~~   50 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQIINE   50 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            45999999999999999999998874

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=89.74  E-value=0.23  Score=59.82  Aligned_cols=24  Identities=25%  Similarity=0.288  Sum_probs=21.5

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|.|+||+||||||++++++..+.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHHhhcC
Confidence            478999999999999999987765

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=89.71  E-value=0.13  Score=54.31  Aligned_cols=24  Identities=21%  Similarity=0.134  Sum_probs=21.5

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -++|+||+||||||+++++.-++.
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            568999999999999999987765

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=89.69  E-value=0.17  Score=58.13  Aligned_cols=73  Identities=25%  Similarity=0.230  Sum_probs=44.5

Q ss_pred             CCCCCCCCCccchHHHHHHhcCEEEEEEcCCC-----CCC---CCC------C--CCccccccchh-----h-hhHHHHH
Q psy4730         665 PEGPAGTGKTETSKDLAKAVAKQCIVFNCSDR-----PTF---PPN------L--RPSDLIIPTNV-----T-CMQNFFI  722 (1513)
Q Consensus       665 ~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~-----~~f---~~~------~--~~~~~~v~t~~-----~-~~~~~~~  722 (1513)
                      +.||+|+|||+++..||+.++-  .++||+..     ++.   +|.      .  -+-++.-|...     . ......+
T Consensus         8 i~GptgsGKt~la~~La~~~~~--~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a~~~i   85 (322)
T 3exa_A            8 IVGPTAVGKTKTSVMLAKRLNG--EVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLATPLI   85 (322)
T ss_dssp             EECCTTSCHHHHHHHHHHTTTE--EEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHHHHHH
T ss_pred             EECCCcCCHHHHHHHHHHhCcc--ceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHHHHHH
Confidence            5799999999999999999985  46677533     221   221      0  01222222211     1 1223345


Q ss_pred             HHHhcCCccceeccCCC
Q psy4730         723 NLYLQNDVPMMFVGPTG  739 (1513)
Q Consensus       723 ~~~~~~~~~~ll~G~~g  739 (1513)
                      +.+...|+.++|||.||
T Consensus        86 ~~i~~~gk~pIlVGGTg  102 (322)
T 3exa_A           86 TEIHERGRLPFLVGGTG  102 (322)
T ss_dssp             HHHHHTTCEEEEESCCH
T ss_pred             HHHHhCCCcEEEEcCcH
Confidence            55678899999999664

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=89.68  E-value=0.11  Score=57.13  Aligned_cols=24  Identities=25%  Similarity=0.148  Sum_probs=20.6

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      .-+.|+||+||||||++++++..+
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            457899999999999999997554

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=89.65  E-value=0.13  Score=57.17  Aligned_cols=24  Identities=17%  Similarity=0.247  Sum_probs=20.9

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      .-+-|+||+||||||++++++..+
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999998654

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=89.46  E-value=0.12  Score=57.37  Aligned_cols=25  Identities=24%  Similarity=0.264  Sum_probs=21.4

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+.|+||+||||||++++|+..+
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           31 GALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3568899999999999999997554

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=89.43  E-value=0.13  Score=55.60  Aligned_cols=24  Identities=29%  Similarity=0.304  Sum_probs=21.1

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      .-|.|+|++||||||+.+.|++.+
T Consensus        22 ~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           22 FIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            457899999999999999998765

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=89.43  E-value=0.16  Score=56.52  Aligned_cols=26  Identities=23%  Similarity=0.313  Sum_probs=22.6

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .-|-|.||+||||||+.+.|+..++.
T Consensus        26 ~iigI~G~~GsGKSTl~k~L~~~lG~   51 (245)
T 2jeo_A           26 FLIGVSGGTASGKSTVCEKIMELLGQ   51 (245)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhch
Confidence            35789999999999999999988753

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=89.41  E-value=0.15  Score=55.78  Aligned_cols=26  Identities=35%  Similarity=0.201  Sum_probs=22.2

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ...-+.|+||+||||||+++.++...
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34579999999999999999998643

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=89.38  E-value=0.16  Score=54.41  Aligned_cols=25  Identities=24%  Similarity=0.230  Sum_probs=21.9

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|.|.|++||||||+.+.|++.++
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~lg   37 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNKYG   37 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3788999999999999999998753

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=89.18  E-value=0.17  Score=54.38  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=21.8

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|.|.|++||||||+.+.|++.++
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg   27 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALG   27 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            588999999999999999998765

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=89.11  E-value=0.16  Score=54.34  Aligned_cols=24  Identities=21%  Similarity=0.092  Sum_probs=21.2

Q ss_pred             cceEEEeccCCCCchHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      ..-|.|+|++||||||+.+.|++.
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            346899999999999999999875

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=89.09  E-value=0.13  Score=56.04  Aligned_cols=25  Identities=28%  Similarity=0.208  Sum_probs=21.2

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+.|+||+||||||++++|+..+
T Consensus        35 Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           35 GNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468899999999999999997654

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=89.06  E-value=0.13  Score=59.55  Aligned_cols=25  Identities=32%  Similarity=0.505  Sum_probs=22.5

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..|+|+|||||||||+.+.|++.++
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4799999999999999999998765

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=89.02  E-value=0.73  Score=53.95  Aligned_cols=26  Identities=27%  Similarity=0.226  Sum_probs=23.0

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .-|.++|++|+||||+++.|+..+..
T Consensus        57 ~~i~i~G~~g~GKSTl~~~l~~~~~~   82 (341)
T 2p67_A           57 LRLGVTGTPGAGKSTFLEAFGMLLIR   82 (341)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            46889999999999999999988764

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=89.00  E-value=0.19  Score=57.63  Aligned_cols=26  Identities=15%  Similarity=0.162  Sum_probs=23.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .-|.|+|++||||||+.+.|+..+..
T Consensus        32 ~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           32 LFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            35789999999999999999999875

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=88.93  E-value=0.14  Score=58.23  Aligned_cols=24  Identities=25%  Similarity=0.322  Sum_probs=20.9

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      .-+-|+||+||||||++++|+..+
T Consensus        35 e~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           35 EVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC
Confidence            468899999999999999997654

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=88.87  E-value=0.16  Score=59.85  Aligned_cols=24  Identities=38%  Similarity=0.346  Sum_probs=20.9

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      .-+-|+||+||||||++++++...
T Consensus        31 e~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           31 EILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCchHHHHHHHHhcCC
Confidence            458899999999999999998654

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=88.86  E-value=0.2  Score=57.85  Aligned_cols=26  Identities=27%  Similarity=0.416  Sum_probs=23.1

Q ss_pred             CccceeccCCCccchHhHHHHHhccC
Q psy4730         729 DVPMMFVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       729 ~~~~ll~G~~g~GKt~~v~~~~~~~~  754 (1513)
                      +.+++|.||||||||+++..+...+.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999998877654

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=88.83  E-value=0.25  Score=54.57  Aligned_cols=26  Identities=23%  Similarity=0.224  Sum_probs=21.0

Q ss_pred             HHHhcceEEEeccCCCCchHHHHHHH
Q psy4730        1347 MILVRHGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1347 ~~~~~~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      .+....-++++|||||||||++....
T Consensus        72 ~i~~g~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           72 AISQNSVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             HHHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred             HHhcCCEEEEEeCCCCCcHHhHHHHH
Confidence            44557889999999999999877553

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=88.77  E-value=0.14  Score=57.69  Aligned_cols=24  Identities=21%  Similarity=0.203  Sum_probs=20.8

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      .-+-|+||+||||||++++|+..+
T Consensus        33 e~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           33 DVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            457899999999999999997654

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=88.76  E-value=0.14  Score=57.12  Aligned_cols=25  Identities=24%  Similarity=0.224  Sum_probs=21.4

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+.|+||+||||||++++|+..+
T Consensus        35 Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           35 GEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468899999999999999997654

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=88.73  E-value=0.15  Score=56.94  Aligned_cols=25  Identities=28%  Similarity=0.341  Sum_probs=21.5

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+.|+||+||||||++++|+..+
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           28 NSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468899999999999999997654

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=88.68  E-value=0.18  Score=54.89  Aligned_cols=22  Identities=27%  Similarity=0.267  Sum_probs=20.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|.|.|++||||||+.+.|++
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999986

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=88.64  E-value=0.15  Score=57.39  Aligned_cols=25  Identities=20%  Similarity=0.312  Sum_probs=21.3

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+.|+||+||||||++++|+..+
T Consensus        33 Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           33 GDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999997654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=88.59  E-value=0.18  Score=53.53  Aligned_cols=22  Identities=18%  Similarity=0.350  Sum_probs=19.5

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|.|+|++||||||+++.|+.
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~   51 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTR   51 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhc
Confidence            3689999999999999999864

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=88.57  E-value=0.15  Score=57.67  Aligned_cols=25  Identities=24%  Similarity=0.336  Sum_probs=21.2

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+-|+||+||||||++++|+..+
T Consensus        37 Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           37 GEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3468899999999999999997654

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=88.55  E-value=0.15  Score=56.66  Aligned_cols=24  Identities=25%  Similarity=0.373  Sum_probs=20.9

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      .-+.|+||+||||||++++|+..+
T Consensus        33 e~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           33 QIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            458899999999999999997654

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=88.49  E-value=0.18  Score=56.48  Aligned_cols=24  Identities=25%  Similarity=0.220  Sum_probs=20.9

Q ss_pred             cceEEEeccCCCCchHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      ..-+.|+||+||||||++++|+..
T Consensus        29 Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           29 GEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            346889999999999999999864

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=88.46  E-value=0.18  Score=57.08  Aligned_cols=24  Identities=29%  Similarity=0.275  Sum_probs=21.2

Q ss_pred             cceEEEeccCCCCchHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      ..-+.|+||+||||||++++|+..
T Consensus        46 Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           46 GEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            346889999999999999999865

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=88.33  E-value=0.45  Score=58.24  Aligned_cols=43  Identities=16%  Similarity=0.111  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHhcc-eEEEeccCCCCchHHHHHHHHHHHhH
Q psy4730        1336 WYIEKIIQVYEMILVRH-GLMVVGESFGGKTTAYQTLADSLTDI 1378 (1513)
Q Consensus      1336 ~~~~k~~qL~~~~~~~~-gvilvG~tgsGKTt~~~~L~~~~~~l 1378 (1513)
                      ....-+..+...+..+. .++|.|++|||||+++..+++.+...
T Consensus        29 ~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~   72 (459)
T 3upu_A           29 GQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIST   72 (459)
T ss_dssp             HHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence            33333333333333344 99999999999999999999888653

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=88.28  E-value=0.16  Score=55.99  Aligned_cols=25  Identities=28%  Similarity=0.316  Sum_probs=21.3

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+.|+||+||||||++++|+..+
T Consensus        34 Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           34 GQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999997554

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=88.26  E-value=0.18  Score=59.73  Aligned_cols=24  Identities=29%  Similarity=0.239  Sum_probs=21.0

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      .-+-|+||+||||||++++++..+
T Consensus        30 e~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           30 EFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEEcCCCchHHHHHHHHHcCC
Confidence            457899999999999999998654

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=88.26  E-value=0.16  Score=57.17  Aligned_cols=25  Identities=24%  Similarity=0.189  Sum_probs=21.9

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+.|+||+||||||++++|+..+
T Consensus        46 Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           46 GTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccC
Confidence            4578999999999999999998654

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=88.25  E-value=0.18  Score=56.41  Aligned_cols=24  Identities=21%  Similarity=0.274  Sum_probs=22.1

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|.|.|++||||||+.+.|++.++
T Consensus        24 iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           24 LIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            588999999999999999998876

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=88.25  E-value=0.2  Score=53.56  Aligned_cols=26  Identities=23%  Similarity=0.289  Sum_probs=22.3

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..+|+|+||||+||||+...|++...
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g~   59 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRGH   59 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence            35899999999999999998876644

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=88.23  E-value=0.18  Score=59.21  Aligned_cols=25  Identities=28%  Similarity=0.214  Sum_probs=21.3

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+.|+||+||||||++++++..+
T Consensus        41 Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           41 GEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3468899999999999999998654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=88.23  E-value=0.2  Score=53.45  Aligned_cols=22  Identities=18%  Similarity=0.350  Sum_probs=19.4

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|.|+|++|+||||+++.|..
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~   27 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTR   27 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHhc
Confidence            3589999999999999999864

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=88.22  E-value=0.36  Score=59.48  Aligned_cols=48  Identities=19%  Similarity=0.272  Sum_probs=34.9

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQ 1405 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~e 1405 (1513)
                      ...+++.|.||||||++++++...+-.-.       ....+.++.++||....+.
T Consensus       167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~-------~p~~v~l~liDpK~~el~~  214 (512)
T 2ius_A          167 MPHLLVAGTTGSGASVGVNAMILSMLYKA-------QPEDVRFIMIDPKMLELSV  214 (512)
T ss_dssp             SCSEEEECCTTSSHHHHHHHHHHHHHTTC-------CTTTEEEEEECCSSSGGGG
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhC-------CCceEEEEEECCchhhhhh
Confidence            35799999999999999999876543210       0124788999999865443

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=88.18  E-value=0.17  Score=57.18  Aligned_cols=25  Identities=28%  Similarity=0.226  Sum_probs=21.2

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+.|+||+||||||++++|+..+
T Consensus        50 Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           50 GEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            3468899999999999999997654

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=88.14  E-value=0.39  Score=57.65  Aligned_cols=53  Identities=23%  Similarity=0.235  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHcCccccHHHHHHHHHHHHHHHhcc-eEEEeccCCCCchHHHHHHHHH
Q psy4730        1319 IEQIKINLAKRNAQATDWYIEKIIQVYEMILVRH-GLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1319 ~~~i~~~~~~~~l~~~~~~~~k~~qL~~~~~~~~-gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      .+.+.-.+....+.   ....++.+..+...... -|.|+||+|+||||++++|+..
T Consensus        39 l~~is~~i~~Ge~~---~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           39 LNLIELRMRAGNIQ---LTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             HHHHHHHHHHTCHH---HHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             hhhccceecCCCCc---ccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCC
Confidence            34444444444432   22234444333333344 5679999999999999999754

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=88.09  E-value=0.16  Score=58.30  Aligned_cols=25  Identities=32%  Similarity=0.348  Sum_probs=22.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..|+|+|||||||||+...|++.++
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~~   28 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRLN   28 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhCc
Confidence            4688999999999999999998764

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=88.06  E-value=0.19  Score=58.64  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=22.6

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|.|.|||||||||+.+.|++.++
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            4689999999999999999998875

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=88.04  E-value=0.19  Score=53.08  Aligned_cols=26  Identities=19%  Similarity=0.390  Sum_probs=22.3

Q ss_pred             CCccceeccCCCccchHhHHHHHhcc
Q psy4730         728 NDVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       728 ~~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      .++.+.|+||+|||||++++.+....
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            36788999999999999999887654

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=88.03  E-value=0.17  Score=56.82  Aligned_cols=25  Identities=20%  Similarity=0.288  Sum_probs=21.2

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+.|+||+||||||++++|+..+
T Consensus        41 Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           41 GEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468899999999999999997554

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=88.02  E-value=0.17  Score=57.35  Aligned_cols=25  Identities=24%  Similarity=0.213  Sum_probs=21.5

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+.|+||+||||||++++|+..+
T Consensus        45 Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           45 GKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468899999999999999997654

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=87.94  E-value=0.2  Score=59.18  Aligned_cols=24  Identities=29%  Similarity=0.297  Sum_probs=20.9

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      .-+.|+||+||||||++++++..+
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           30 EFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCchHHHHHHHHhcCC
Confidence            457899999999999999998654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=87.93  E-value=0.2  Score=59.09  Aligned_cols=24  Identities=33%  Similarity=0.264  Sum_probs=20.9

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      .-+-|+||+||||||++++++..+
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           30 EFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEEcCCCchHHHHHHHHHCCC
Confidence            457899999999999999998654

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=87.89  E-value=0.22  Score=57.73  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=21.8

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|-|.||+||||||+.+.|+..+.
T Consensus        94 iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            588999999999999999988775

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=87.86  E-value=0.22  Score=57.60  Aligned_cols=25  Identities=24%  Similarity=0.251  Sum_probs=22.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|-|+||+||||||+.++|+..+.
T Consensus        81 ~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           81 YIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4588999999999999999998765

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=87.70  E-value=0.18  Score=57.34  Aligned_cols=24  Identities=25%  Similarity=0.199  Sum_probs=20.8

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      .-+.|+||+||||||++++|+..+
T Consensus        48 e~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           48 DKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            458899999999999999997654

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=87.67  E-value=0.19  Score=56.28  Aligned_cols=24  Identities=29%  Similarity=0.292  Sum_probs=21.0

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      .-+.|+||+||||||++++|+..+
T Consensus        27 e~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           27 EILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            457899999999999999998665

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=87.56  E-value=0.26  Score=53.78  Aligned_cols=26  Identities=19%  Similarity=0.038  Sum_probs=22.3

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..-++|+||+||||||+++.++....
T Consensus        23 G~~~~i~G~~GsGKTtl~~~l~~~~~   48 (235)
T 2w0m_A           23 GFFIALTGEPGTGKTIFSLHFIAKGL   48 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            45789999999999999999986654

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=87.54  E-value=0.21  Score=59.15  Aligned_cols=24  Identities=29%  Similarity=0.306  Sum_probs=20.9

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      .-+.|+||+||||||++++++..+
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           30 EFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCC
Confidence            468899999999999999998654

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=87.52  E-value=0.22  Score=59.07  Aligned_cols=25  Identities=32%  Similarity=0.284  Sum_probs=21.3

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+-|+||+||||||++++++..+
T Consensus        37 Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           37 GEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCC
Confidence            3467899999999999999998654

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=87.50  E-value=0.19  Score=57.60  Aligned_cols=25  Identities=24%  Similarity=0.379  Sum_probs=22.1

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..|+|+|||||||||+...|++.++
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~~~   35 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKILP   35 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCccCHHHHHHHHHHhCC
Confidence            4688999999999999999998764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=87.49  E-value=0.25  Score=50.59  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=19.5

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|+++|++|+||||+++.|..
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~   27 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCK   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHHc
Confidence            3689999999999999999864

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=87.40  E-value=0.22  Score=59.43  Aligned_cols=25  Identities=20%  Similarity=0.276  Sum_probs=21.9

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+.|+||+||||||++++++..+
T Consensus        47 Ge~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           47 GQRVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCC
Confidence            4578999999999999999998654

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=87.39  E-value=0.23  Score=56.89  Aligned_cols=23  Identities=17%  Similarity=0.211  Sum_probs=20.6

Q ss_pred             ceEEEeccCCCCchHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      .-|+|.|+|||||||+.+.|++.
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999999874

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=87.32  E-value=0.2  Score=56.22  Aligned_cols=25  Identities=28%  Similarity=0.226  Sum_probs=21.2

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+.|+||+||||||++++|+..+
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           31 GDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999997654

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=87.32  E-value=0.2  Score=56.63  Aligned_cols=25  Identities=32%  Similarity=0.422  Sum_probs=21.2

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+.|+||+||||||++++++..+
T Consensus        33 Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           33 GECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3468899999999999999997654

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=87.26  E-value=0.28  Score=56.60  Aligned_cols=26  Identities=42%  Similarity=0.469  Sum_probs=23.4

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .-|+++|++||||||++..||..+..
T Consensus       105 ~vi~ivG~~GsGKTTl~~~LA~~l~~  130 (306)
T 1vma_A          105 FVIMVVGVNGTGKTTSCGKLAKMFVD  130 (306)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHHHHHh
Confidence            46899999999999999999988864

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=87.21  E-value=0.26  Score=50.05  Aligned_cols=21  Identities=24%  Similarity=0.482  Sum_probs=18.9

Q ss_pred             eEEEeccCCCCchHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      -|+++|++|+||||+++.|..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~   23 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLK   23 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999864

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=87.18  E-value=0.25  Score=50.97  Aligned_cols=22  Identities=23%  Similarity=0.450  Sum_probs=19.4

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|.|+|++|+||||+++.|..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3589999999999999999863

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=87.18  E-value=0.35  Score=55.93  Aligned_cols=37  Identities=14%  Similarity=0.219  Sum_probs=28.4

Q ss_pred             ceEeecCCCChHHHHHHHHHHhhhhhhccchhHHHHH
Q psy4730         955 MNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKL  991 (1513)
Q Consensus       955 f~~~~~~~~~~~~l~~i~~~~l~~~~~~~f~~~~~~~  991 (1513)
                      +..+.++.++.+.|..=+..-++.|+..|+.++++.+
T Consensus       203 ~~~~~L~~~~r~~L~~RI~~Rvd~M~~~Gl~~Ev~~L  239 (323)
T 3crm_A          203 VAQLAIAPEQRQVLHARIAQRFRQMLEQGFIAEVEAL  239 (323)
T ss_dssp             EEEEEEECSSHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             eEEEEEcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            4567777777888888888777888877888877766

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=87.14  E-value=0.26  Score=50.06  Aligned_cols=21  Identities=33%  Similarity=0.332  Sum_probs=18.8

Q ss_pred             eEEEeccCCCCchHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      -|+++|++|+||||+++.|..
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~   25 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999998863

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=87.09  E-value=0.31  Score=56.56  Aligned_cols=75  Identities=19%  Similarity=0.167  Sum_probs=46.1

Q ss_pred             CCCCCCCCCCccchHHHHHHhcCEEEEEEcCCCC-----CC---CCCC------C--Ccccccc-ch-----hhh-hHHH
Q psy4730         664 APEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRP-----TF---PPNL------R--PSDLIIP-TN-----VTC-MQNF  720 (1513)
Q Consensus       664 ~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~~-----~f---~~~~------~--~~~~~v~-t~-----~~~-~~~~  720 (1513)
                      .+.||+|+|||++...||+.+|..  ++|++...     +.   +|..      .  +-++.-| ..     +.. .-..
T Consensus        44 vI~GPTgsGKTtLa~~LA~~l~~e--iIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~a~~  121 (339)
T 3a8t_A           44 VLMGATGTGKSRLSIDLAAHFPLE--VINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSLAGK  121 (339)
T ss_dssp             EEECSTTSSHHHHHHHHHTTSCEE--EEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHCCCc--EEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHHHHH
Confidence            568999999999999999999854  66766442     21   1211      0  1233333 21     111 1222


Q ss_pred             HHHHHhcCCccceeccCCCc
Q psy4730         721 FINLYLQNDVPMMFVGPTGT  740 (1513)
Q Consensus       721 ~~~~~~~~~~~~ll~G~~g~  740 (1513)
                      .+..+...++.+++||.||.
T Consensus       122 ~i~~i~~~g~~pIlvGGtgl  141 (339)
T 3a8t_A          122 AVSEITGRRKLPVLVGGSNS  141 (339)
T ss_dssp             HHHHHHHTTCEEEEECCCHH
T ss_pred             HHHHHHhcCCeEEEEcCHHH
Confidence            44556778899999998754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=87.06  E-value=0.25  Score=59.39  Aligned_cols=21  Identities=38%  Similarity=0.513  Sum_probs=19.5

Q ss_pred             EEEeccCCCCchHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      +.|+||+||||||++++|+..
T Consensus        45 vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           45 ILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             EEEECSTTSSSHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCc
Confidence            789999999999999999765

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=87.03  E-value=0.23  Score=53.32  Aligned_cols=26  Identities=35%  Similarity=0.687  Sum_probs=21.2

Q ss_pred             CCccceeccCCCccchHhHHHHHhcc
Q psy4730         728 NDVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       728 ~~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      .++.+.|+||+|+||||+++.+....
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            57889999999999999999887643

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=87.01  E-value=0.22  Score=52.46  Aligned_cols=21  Identities=48%  Similarity=0.604  Sum_probs=19.2

Q ss_pred             eEEEeccCCCCchHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      -|+|+|++|+||||+++.++.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999999875

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=87.00  E-value=0.41  Score=56.89  Aligned_cols=74  Identities=18%  Similarity=0.074  Sum_probs=44.9

Q ss_pred             CCCCCCCCCccchHHHHHHhcCEEEEEEcCCC-----CCC---CCC------CC--Cccccccc-----hhhh-hHHHHH
Q psy4730         665 PEGPAGTGKTETSKDLAKAVAKQCIVFNCSDR-----PTF---PPN------LR--PSDLIIPT-----NVTC-MQNFFI  722 (1513)
Q Consensus       665 ~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~-----~~f---~~~------~~--~~~~~v~t-----~~~~-~~~~~~  722 (1513)
                      +.||+|+|||+++..||+.++..  +++++..     ++.   +|.      ..  +-+..-|.     .+.. -....+
T Consensus         7 i~GptgsGKttla~~La~~~~~~--iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~~~i   84 (409)
T 3eph_A            7 IAGTTGVGKSQLSIQLAQKFNGE--VINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECMNAI   84 (409)
T ss_dssp             EEECSSSSHHHHHHHHHHHHTEE--EEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHHHHH
T ss_pred             EECcchhhHHHHHHHHHHHCCCe--EeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHHHHH
Confidence            46999999999999999999854  5776542     221   121      00  11122222     1111 123345


Q ss_pred             HHHhcCCccceeccCCCc
Q psy4730         723 NLYLQNDVPMMFVGPTGT  740 (1513)
Q Consensus       723 ~~~~~~~~~~ll~G~~g~  740 (1513)
                      ..+...|+..+|||.||-
T Consensus        85 ~~i~~~g~~pilVGGTgl  102 (409)
T 3eph_A           85 EDIHRRGKIPIVVGGTHY  102 (409)
T ss_dssp             HHHHTTTCEEEEECSCGG
T ss_pred             HHHHhcCCCEEEECChHH
Confidence            556788999999997764

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=86.95  E-value=0.26  Score=56.47  Aligned_cols=26  Identities=23%  Similarity=0.235  Sum_probs=20.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .-|.|.|++||||||+.+.|++.++.
T Consensus         6 ~iIgItG~sGSGKSTva~~L~~~lg~   31 (290)
T 1a7j_A            6 PIISVTGSSGAGTSTVKHTFDQIFRR   31 (290)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            46889999999999999999998874

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=86.93  E-value=0.22  Score=56.21  Aligned_cols=25  Identities=24%  Similarity=0.418  Sum_probs=21.2

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+.|+||+||||||++++|+..+
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            3458899999999999999997654

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=86.79  E-value=0.16  Score=58.67  Aligned_cols=26  Identities=31%  Similarity=0.273  Sum_probs=22.1

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ...-|-|+||+||||||++++|+..+
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCC
Confidence            34579999999999999999997654

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=86.78  E-value=0.27  Score=54.30  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=21.7

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|.|+|++||||||+.+.|++.++
T Consensus        18 ~i~i~G~~gsGKst~~~~l~~~lg   41 (236)
T 1q3t_A           18 QIAIDGPASSGKSTVAKIIAKDFG   41 (236)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            588999999999999999998764

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=86.74  E-value=0.18  Score=59.19  Aligned_cols=24  Identities=21%  Similarity=0.245  Sum_probs=20.9

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      .-+.|+||+||||||++++++..+
T Consensus        27 e~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           27 EYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCccHHHHHHHHHcCC
Confidence            468899999999999999998654

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=86.73  E-value=0.29  Score=49.87  Aligned_cols=21  Identities=19%  Similarity=0.249  Sum_probs=18.7

Q ss_pred             eEEEeccCCCCchHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      -|+++|++|+||||+++.|..
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~   25 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999988763

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=86.72  E-value=0.25  Score=53.07  Aligned_cols=26  Identities=27%  Similarity=0.473  Sum_probs=22.7

Q ss_pred             CCccceeccCCCccchHhHHHHHhcc
Q psy4730         728 NDVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       728 ~~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      .++.+.|+||+|+|||++++.++...
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            56788999999999999999988754

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=86.72  E-value=0.33  Score=49.67  Aligned_cols=24  Identities=17%  Similarity=0.282  Sum_probs=21.1

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -.+|+||+||||||++.++.-++.
T Consensus        25 ~~~I~G~NGsGKStil~Ai~~~l~   48 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAILVGLY   48 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHc
Confidence            578999999999999999987763

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=86.68  E-value=0.31  Score=55.97  Aligned_cols=26  Identities=27%  Similarity=0.299  Sum_probs=23.4

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..-|+++|++|+||||++..|+..+.
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~~l~  130 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAAISM  130 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34799999999999999999998876

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=86.66  E-value=0.21  Score=59.26  Aligned_cols=26  Identities=19%  Similarity=0.333  Sum_probs=22.9

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..-+.|+||+||||||+++.|+..+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            45789999999999999999988764

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=86.62  E-value=0.26  Score=60.15  Aligned_cols=31  Identities=29%  Similarity=0.304  Sum_probs=25.3

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhh
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAA 1380 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~ 1380 (1513)
                      ...-|.|+||+||||||++++|+.......+
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G  167 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFNA  167 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence            3456999999999999999999887654433

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=86.49  E-value=0.38  Score=55.42  Aligned_cols=22  Identities=23%  Similarity=0.209  Sum_probs=20.3

Q ss_pred             cceEEEeccCCCCchHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      ..-+.|+||+|+||||++++|+
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            5678999999999999999998

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=86.38  E-value=0.3  Score=51.54  Aligned_cols=23  Identities=22%  Similarity=0.419  Sum_probs=20.1

Q ss_pred             cceEEEeccCCCCchHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      ..-|+++|++|+||||+++.|..
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~   70 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTT   70 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            34799999999999999998864

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=86.37  E-value=0.31  Score=49.68  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=19.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|+++|++|+||||+++.|..
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~   26 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            3589999999999999998863

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=86.22  E-value=0.32  Score=49.86  Aligned_cols=21  Identities=14%  Similarity=0.309  Sum_probs=18.9

Q ss_pred             eEEEeccCCCCchHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      -|+++|++|+||||+++.|..
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~   28 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVE   28 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            589999999999999999853

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=86.20  E-value=0.31  Score=49.90  Aligned_cols=20  Identities=20%  Similarity=0.375  Sum_probs=18.5

Q ss_pred             eEEEeccCCCCchHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      -|+++|++|+||||+++.|.
T Consensus         5 ~i~v~G~~~~GKssli~~l~   24 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFV   24 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHH
Confidence            58999999999999999886

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=86.19  E-value=0.32  Score=49.76  Aligned_cols=20  Identities=25%  Similarity=0.418  Sum_probs=18.4

Q ss_pred             eEEEeccCCCCchHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      -|+++|++|+||||+++.|.
T Consensus         5 ~i~v~G~~~~GKssli~~l~   24 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFV   24 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            58999999999999999885

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=86.15  E-value=0.29  Score=52.93  Aligned_cols=28  Identities=21%  Similarity=0.495  Sum_probs=23.7

Q ss_pred             cCCccceeccCCCccchHhHHHHHhccC
Q psy4730         727 QNDVPMMFVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       727 ~~~~~~ll~G~~g~GKt~~v~~~~~~~~  754 (1513)
                      ..++.+.|+||+|+|||++++.+...++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            4567788999999999999999887653

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=86.14  E-value=0.35  Score=53.23  Aligned_cols=26  Identities=31%  Similarity=0.289  Sum_probs=20.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .-|++.|++||||||.++.|++.+..
T Consensus        26 ~~I~~eG~~GsGKsT~~~~l~~~l~~   51 (227)
T 3v9p_A           26 KFITFEGIDGAGKTTHLQWFCDRLQE   51 (227)
T ss_dssp             CEEEEECCC---CHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            35888999999999999999999875

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=86.14  E-value=0.32  Score=50.34  Aligned_cols=21  Identities=14%  Similarity=0.317  Sum_probs=19.0

Q ss_pred             ceEEEeccCCCCchHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      .-|+++|++|+||||+++.|.
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~   28 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYV   28 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            368999999999999999885

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=86.10  E-value=0.33  Score=49.60  Aligned_cols=21  Identities=24%  Similarity=0.298  Sum_probs=19.0

Q ss_pred             eEEEeccCCCCchHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      -|+++|++|+||||+++.|..
T Consensus         5 ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999999864

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=86.07  E-value=0.65  Score=50.26  Aligned_cols=42  Identities=14%  Similarity=0.084  Sum_probs=28.5

Q ss_pred             cHHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1334 TDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1334 ~~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      +......+..++.. ....-|+++|++|+||||+++.|+..+.
T Consensus        14 ~~~~~~~~~~~~~~-~~~~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           14 NKRLAEKNREALRE-SGTVAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             HHHHHHHHHHHHHH-HTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHhhcc-cCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            33444444444332 2345789999999999999999987753

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=86.04  E-value=0.25  Score=56.49  Aligned_cols=24  Identities=29%  Similarity=0.343  Sum_probs=20.8

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      .-+.|+||+||||||++++|+..+
T Consensus        65 e~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           65 QLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCC
Confidence            468899999999999999997554

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=86.01  E-value=0.33  Score=49.82  Aligned_cols=21  Identities=24%  Similarity=0.358  Sum_probs=18.9

Q ss_pred             ceEEEeccCCCCchHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      --|+++|++|+||||+++.|.
T Consensus         7 ~~i~v~G~~~~GKssli~~l~   27 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYC   27 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHH
Confidence            368999999999999998886

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=85.95  E-value=0.38  Score=52.42  Aligned_cols=26  Identities=27%  Similarity=0.280  Sum_probs=23.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .-|.+.|++||||||..+.|++.+..
T Consensus         7 ~~i~~eG~~gsGKsT~~~~l~~~l~~   32 (213)
T 4edh_A            7 LFVTLEGPEGAGKSTNRDYLAERLRE   32 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            45788999999999999999998875

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=85.89  E-value=0.3  Score=57.53  Aligned_cols=25  Identities=24%  Similarity=0.113  Sum_probs=21.1

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+-|+||+||||||++++++..+
T Consensus        54 Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           54 GQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEEcCCCchHHHHHHHHhcCC
Confidence            3468899999999999999997543

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=85.85  E-value=0.98  Score=54.60  Aligned_cols=26  Identities=31%  Similarity=0.368  Sum_probs=23.4

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .-|+++|++|+||||+...|+..+..
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l~~  125 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYIQK  125 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            36899999999999999999988865

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=85.83  E-value=0.32  Score=50.68  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=19.3

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|.|+|++|+||||+++.|..
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~   26 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAG   26 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3589999999999999999863

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=85.81  E-value=0.33  Score=49.82  Aligned_cols=22  Identities=18%  Similarity=0.172  Sum_probs=19.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|+++|++|+||||+++.|..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            3589999999999999998863

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=85.77  E-value=0.33  Score=50.11  Aligned_cols=22  Identities=23%  Similarity=0.286  Sum_probs=19.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|+++|++|+||||+++.|..
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCccHHHHHHHHhc
Confidence            3589999999999999998853

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=85.74  E-value=0.34  Score=50.24  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=19.4

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|+++|++|+||||+++.|..
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~~   30 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYVN   30 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999998853

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=85.61  E-value=0.28  Score=52.58  Aligned_cols=28  Identities=25%  Similarity=0.338  Sum_probs=22.8

Q ss_pred             hcCCccceeccCCCccchHhHHHHHhcc
Q psy4730         726 LQNDVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       726 ~~~~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      +..++.++|+|++|||||++.+.+...+
T Consensus        22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           22 SNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            3456789999999999999999887654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=85.58  E-value=0.32  Score=49.76  Aligned_cols=20  Identities=15%  Similarity=0.293  Sum_probs=18.1

Q ss_pred             eEEEeccCCCCchHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      =|+++|++|+||||+++.|.
T Consensus         4 ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            48999999999999999884

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=85.58  E-value=0.32  Score=52.41  Aligned_cols=28  Identities=29%  Similarity=0.662  Sum_probs=24.0

Q ss_pred             hcCCccceeccCCCccchHhHHHHHhcc
Q psy4730         726 LQNDVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       726 ~~~~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      ...++.++|+||+|||||++.+.+...+
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            3457789999999999999999988765

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=85.56  E-value=0.35  Score=50.12  Aligned_cols=22  Identities=32%  Similarity=0.365  Sum_probs=19.5

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|+++|++|+||||+++.|..
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~   31 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQ   31 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999998864

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=85.55  E-value=0.34  Score=50.86  Aligned_cols=22  Identities=23%  Similarity=0.450  Sum_probs=19.5

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|.|+|++|+||||+++.|..
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3589999999999999999863

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=85.49  E-value=0.34  Score=57.54  Aligned_cols=25  Identities=20%  Similarity=0.276  Sum_probs=22.5

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..|+|.|||||||||+...|++.++
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~   27 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFN   27 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCC
Confidence            4688999999999999999998875

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=85.44  E-value=0.19  Score=59.16  Aligned_cols=24  Identities=29%  Similarity=0.263  Sum_probs=20.9

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      .-+-|+||+||||||++++++..+
T Consensus        32 e~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           32 ERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            467899999999999999998654

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=85.41  E-value=0.32  Score=52.79  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=22.1

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|.|.|++||||||+.+.|++.++
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~g   28 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASELS   28 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3589999999999999999988764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=85.35  E-value=0.35  Score=49.58  Aligned_cols=20  Identities=45%  Similarity=0.476  Sum_probs=18.2

Q ss_pred             eEEEeccCCCCchHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      =|+++|++|+||||+++.|.
T Consensus         4 ki~ivG~~~~GKSsli~~l~   23 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFG   23 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            38899999999999999885

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=85.35  E-value=0.32  Score=50.76  Aligned_cols=25  Identities=32%  Similarity=0.331  Sum_probs=21.6

Q ss_pred             ccceeccCCCccchHhHHHHHhccC
Q psy4730         730 VPMMFVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       730 ~~~ll~G~~g~GKt~~v~~~~~~~~  754 (1513)
                      ..++|+|++|||||++.+.+...+.
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4688999999999999999887653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=85.32  E-value=0.37  Score=49.24  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=19.3

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|+++|++|+||||+++.|..
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            3689999999999999998863

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=85.24  E-value=0.48  Score=58.59  Aligned_cols=35  Identities=20%  Similarity=0.413  Sum_probs=29.5

Q ss_pred             HHHHHHHhcCCccceeccCCCccchHhHHHHHhcc
Q psy4730         719 NFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       719 ~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      ...++..+..+..++++|||||||||+++.++..+
T Consensus       250 l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          250 LAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             HHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            44567778899999999999999999999877644

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=85.24  E-value=0.35  Score=55.08  Aligned_cols=21  Identities=33%  Similarity=0.308  Sum_probs=19.5

Q ss_pred             eEEEeccCCCCchHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      -|.|.|++||||||+.+.|++
T Consensus        77 iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           77 VLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999983

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=85.23  E-value=0.31  Score=56.08  Aligned_cols=24  Identities=46%  Similarity=0.423  Sum_probs=19.9

Q ss_pred             cceEEEeccCCCCchHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      .--|+|+||+|+||||+++.|...
T Consensus        18 ~~~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           18 EFTLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCC
Confidence            346799999999999999998643

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=85.19  E-value=0.37  Score=52.11  Aligned_cols=23  Identities=26%  Similarity=0.001  Sum_probs=21.0

Q ss_pred             cceEEEeccCCCCchHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      ..-++|+|||||||||+.+.++.
T Consensus        20 G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           20 GVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999987

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=85.12  E-value=0.42  Score=55.01  Aligned_cols=23  Identities=17%  Similarity=0.094  Sum_probs=20.4

Q ss_pred             cceEEEeccCCCCchHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      ..-+.|+||+||||||++++|+.
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g  191 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINP  191 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHST
T ss_pred             CCeEEEECCCCCcHHHHHHHhcc
Confidence            56789999999999999999864

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=85.09  E-value=0.56  Score=49.23  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=20.2

Q ss_pred             hcceEEEeccCCCCchHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      ...-|+++|++|+||||+++.|.
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~   37 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFS   37 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHh
Confidence            34579999999999999999886

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=85.08  E-value=0.52  Score=56.32  Aligned_cols=28  Identities=11%  Similarity=0.012  Sum_probs=23.1

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .+..++++|+|||||||+++.++..+..
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~   61 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYM   61 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence            3457899999999999999999866543

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=85.00  E-value=0.36  Score=60.21  Aligned_cols=28  Identities=29%  Similarity=0.306  Sum_probs=24.1

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      ....|.|+|++||||||+.+.|+..+..
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L~~  395 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARLME  395 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence            3446889999999999999999998863

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=84.98  E-value=0.55  Score=55.23  Aligned_cols=25  Identities=24%  Similarity=0.248  Sum_probs=22.1

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|.|+|+||+||||+++.|...+.
T Consensus        75 ~~v~lvG~pgaGKSTLln~L~~~~~   99 (349)
T 2www_A           75 FRVGLSGPPGAGKSTFIEYFGKMLT   99 (349)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhh
Confidence            3688999999999999999988764

>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}

Probab=84.89  E-value=1.4  Score=47.90  Aligned_cols=47  Identities=21%  Similarity=0.229  Sum_probs=31.9

Q ss_pred             HHHHHHHHHcCcc-ccHHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHH
Q psy4730        1320 EQIKINLAKRNAQ-ATDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQT 1370 (1513)
Q Consensus      1320 ~~i~~~~~~~~l~-~~~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~ 1370 (1513)
                      ..+.+.+.+.|+. +++.. .+++   ..+..++.+++++|||||||.++-.
T Consensus        29 ~~l~~~l~~~g~~~~~~~Q-~~~i---~~~~~~~~~l~~apTGsGKT~~~~l   76 (228)
T 3iuy_A           29 PDLLKSIIRVGILKPTPIQ-SQAW---PIILQGIDLIVVAQTGTGKTLSYLM   76 (228)
T ss_dssp             HHHHHHHHHHTCCSCCHHH-HHHH---HHHHTTCCEEEECCTTSCHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCHHH-HHHH---HHHhCCCCEEEECCCCChHHHHHHH
Confidence            4566677777874 55544 3333   2233567899999999999988654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=84.86  E-value=0.41  Score=54.78  Aligned_cols=27  Identities=26%  Similarity=0.046  Sum_probs=23.3

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ...-+.|+||||+||||+++.++..+.
T Consensus        34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~   60 (296)
T 1cr0_A           34 GGEVIMVTSGSGMGKSTFVRQQALQWG   60 (296)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            345799999999999999999987764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=84.85  E-value=0.39  Score=51.87  Aligned_cols=23  Identities=22%  Similarity=0.419  Sum_probs=20.1

Q ss_pred             cceEEEeccCCCCchHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      ..-|+++|++|+||||+++.|..
T Consensus        12 ~~~i~~~G~~g~GKTsl~~~l~~   34 (218)
T 1nrj_B           12 QPSIIIAGPQNSGKTSLLTLLTT   34 (218)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            34799999999999999998864

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=84.84  E-value=0.4  Score=50.29  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=19.4

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|+|+|++|+||||+++.|..
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            3689999999999999998863

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=84.77  E-value=0.4  Score=49.55  Aligned_cols=21  Identities=29%  Similarity=0.376  Sum_probs=19.0

Q ss_pred             ceEEEeccCCCCchHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      .-|+++|++|+||||+++.|.
T Consensus        15 ~~i~v~G~~~~GKssli~~l~   35 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFM   35 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            368999999999999999886

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=84.75  E-value=0.55  Score=55.53  Aligned_cols=35  Identities=26%  Similarity=0.471  Sum_probs=30.4

Q ss_pred             HHHHHHhcCCccceeccCCCccchHhHHHHHhccC
Q psy4730         720 FFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       720 ~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~  754 (1513)
                      ..++..+..+..++++||+|+||||+++.++...+
T Consensus       166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            56677889999999999999999999998877543

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=84.73  E-value=0.42  Score=48.75  Aligned_cols=20  Identities=35%  Similarity=0.419  Sum_probs=18.3

Q ss_pred             EEEeccCCCCchHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      |+++|++|+||||+++.|..
T Consensus         3 i~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            78999999999999998864

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=84.71  E-value=0.58  Score=54.75  Aligned_cols=26  Identities=27%  Similarity=0.243  Sum_probs=22.6

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..-|.|+|+|||||||+++.|+..+.
T Consensus        55 g~~v~i~G~~GaGKSTLl~~l~g~~~   80 (337)
T 2qm8_A           55 AIRVGITGVPGVGKSTTIDALGSLLT   80 (337)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhh
Confidence            34688999999999999999987764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=84.70  E-value=0.41  Score=50.06  Aligned_cols=21  Identities=33%  Similarity=0.284  Sum_probs=19.0

Q ss_pred             ceEEEeccCCCCchHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      .-|+++|++|+||||+++.|.
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~   25 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLI   25 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            358999999999999999986

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=84.69  E-value=0.23  Score=53.33  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=19.8

Q ss_pred             ceEEEeccCCCCchHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      .-|.|+|++|+||||+++.|...
T Consensus        27 ~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           27 IEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            35899999999999999988643

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=84.68  E-value=0.38  Score=50.78  Aligned_cols=22  Identities=23%  Similarity=0.339  Sum_probs=19.6

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|+++|++|+||||+++.|..
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~   45 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4699999999999999999864

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=84.67  E-value=0.42  Score=49.06  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=19.5

Q ss_pred             cceEEEeccCCCCchHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      ..-|+++|++|+||||+++.|.
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~   28 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQ   28 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHh
Confidence            3469999999999999999885

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=84.61  E-value=0.42  Score=49.41  Aligned_cols=22  Identities=14%  Similarity=0.350  Sum_probs=19.5

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|+++|++|+||||+++.|..
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~   37 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTE   37 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            4699999999999999999863

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=84.41  E-value=0.41  Score=49.55  Aligned_cols=22  Identities=23%  Similarity=0.274  Sum_probs=19.5

Q ss_pred             cceEEEeccCCCCchHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      ..-|+++|++|+||||+++.|.
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~   29 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIR   29 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            3468999999999999999885

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=84.34  E-value=0.42  Score=52.56  Aligned_cols=25  Identities=32%  Similarity=0.209  Sum_probs=21.7

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      ...-+.|+||+||||||+++.++..
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3457999999999999999999864

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=84.34  E-value=0.39  Score=49.74  Aligned_cols=21  Identities=29%  Similarity=0.461  Sum_probs=18.9

Q ss_pred             ceEEEeccCCCCchHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      .-|+++|++|+||||+++.|.
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~   30 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFA   30 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            368999999999999999885

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=84.34  E-value=0.47  Score=49.52  Aligned_cols=23  Identities=30%  Similarity=0.499  Sum_probs=20.3

Q ss_pred             cceEEEeccCCCCchHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      ..||++.|+||+||||+.-.|.+
T Consensus        16 G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            46999999999999999888765

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=84.33  E-value=0.65  Score=52.05  Aligned_cols=21  Identities=29%  Similarity=0.552  Sum_probs=18.7

Q ss_pred             eEEEeccCCCCchHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      -|.|+|++||||||+++.|..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g   23 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTN   23 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHC
Confidence            488999999999999999853

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=84.29  E-value=0.72  Score=53.55  Aligned_cols=24  Identities=13%  Similarity=0.167  Sum_probs=21.4

Q ss_pred             cceEEEeccCCCCchHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      ...++|.||+|+||||+++.+++.
T Consensus        31 ~~~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           31 YPLTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHH
Confidence            478999999999999999988754

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=84.25  E-value=0.4  Score=56.40  Aligned_cols=24  Identities=21%  Similarity=0.160  Sum_probs=20.9

Q ss_pred             cceEEEeccCCCCchHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      ..-+.|+||+|+||||++++|+..
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g~  238 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLGL  238 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHCC
T ss_pred             CCEEEEECCCCccHHHHHHHHhcc
Confidence            457999999999999999999743

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=84.24  E-value=0.44  Score=50.10  Aligned_cols=22  Identities=32%  Similarity=0.283  Sum_probs=19.6

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      --|+++|++|+||||+++.|..
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~   43 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQ   43 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHc
Confidence            3689999999999999999864

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=84.21  E-value=0.44  Score=50.29  Aligned_cols=22  Identities=27%  Similarity=0.378  Sum_probs=19.4

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|+|+|++|+||||+++.|..
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~   47 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTR   47 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhc
Confidence            3699999999999999998864

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=84.19  E-value=0.27  Score=59.39  Aligned_cols=25  Identities=28%  Similarity=0.134  Sum_probs=21.4

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-|+|+|+|||||||+.+.|++.+
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhc
Confidence            3579999999999999999997644

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=84.12  E-value=0.43  Score=49.40  Aligned_cols=21  Identities=29%  Similarity=0.506  Sum_probs=19.0

Q ss_pred             eEEEeccCCCCchHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      -|+++|++|+||||+++.|..
T Consensus         8 ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHG
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            589999999999999999864

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=84.09  E-value=0.45  Score=49.54  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=19.6

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|+++|++|+||||+++.|..
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~   40 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMY   40 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhh
Confidence            4699999999999999998863

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=84.08  E-value=0.46  Score=49.31  Aligned_cols=22  Identities=36%  Similarity=0.430  Sum_probs=19.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|+++|++|+||||+++.|..
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~   32 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKD   32 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHh
Confidence            3689999999999999998853

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=84.08  E-value=0.45  Score=50.28  Aligned_cols=21  Identities=29%  Similarity=0.371  Sum_probs=19.1

Q ss_pred             eEEEeccCCCCchHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      -|+++|++|+||||+++.|..
T Consensus         9 ki~v~G~~~~GKSsli~~l~~   29 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTK   29 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999864

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=84.05  E-value=0.42  Score=50.06  Aligned_cols=21  Identities=29%  Similarity=0.349  Sum_probs=18.5

Q ss_pred             eEEEeccCCCCchHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      -|+++|++|+||||+++.|..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~   23 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTG   23 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            378999999999999998863

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=84.01  E-value=0.45  Score=49.70  Aligned_cols=21  Identities=19%  Similarity=0.388  Sum_probs=19.0

Q ss_pred             ceEEEeccCCCCchHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      .-|+++|++|+||||+++.|.
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~   31 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFI   31 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999885

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=83.99  E-value=0.42  Score=52.18  Aligned_cols=29  Identities=34%  Similarity=0.701  Sum_probs=22.9

Q ss_pred             HhcCCccceeccCCCccchHhHHHHHhcc
Q psy4730         725 YLQNDVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       725 ~~~~~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      -+..++.+.|+||+|+|||++++.+....
T Consensus        19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           19 SMNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             ---CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             ecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            35678899999999999999999877644

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A

Probab=83.88  E-value=1.2  Score=47.48  Aligned_cols=47  Identities=21%  Similarity=0.177  Sum_probs=30.2

Q ss_pred             HHHHHHHHHcCcc-ccHHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHH
Q psy4730        1320 EQIKINLAKRNAQ-ATDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQT 1370 (1513)
Q Consensus      1320 ~~i~~~~~~~~l~-~~~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~ 1370 (1513)
                      +.+.+.+.+.|+. +++.. ..++.   .+...+.+++.+|||||||.++-.
T Consensus        10 ~~l~~~l~~~~~~~~~~~Q-~~~i~---~~~~~~~~li~~~TGsGKT~~~~~   57 (207)
T 2gxq_A           10 PEILEALHGRGLTTPTPIQ-AAALP---LALEGKDLIGQARTGTGKTLAFAL   57 (207)
T ss_dssp             HHHHHHHHHTTCCSCCHHH-HHHHH---HHHTTCCEEEECCTTSCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCHHH-HHHHH---HHcCCCCEEEECCCCChHHHHHHH
Confidence            4455566667774 44443 33332   233457899999999999987543

>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19

Probab=83.87  E-value=1.2  Score=47.56  Aligned_cols=48  Identities=15%  Similarity=0.184  Sum_probs=31.0

Q ss_pred             HHHHHHHHHcCccccHHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHH
Q psy4730        1320 EQIKINLAKRNAQATDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQT 1370 (1513)
Q Consensus      1320 ~~i~~~~~~~~l~~~~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~ 1370 (1513)
                      +.+.+.+.+.|+..-..+...++.   .+...+.+++++|||||||.++-.
T Consensus        12 ~~l~~~l~~~g~~~~~~~Q~~~i~---~~~~~~~~lv~apTGsGKT~~~~~   59 (206)
T 1vec_A           12 RELLMGIFEMGWEKPSPIQEESIP---IALSGRDILARAKNGTGKSGAYLI   59 (206)
T ss_dssp             HHHHHHHHTTTCCSCCHHHHHHHH---HHHTTCCEEEECCSSSTTHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHH---HHccCCCEEEECCCCCchHHHHHH
Confidence            455666667777433333344433   233467899999999999977653

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=83.85  E-value=0.46  Score=49.80  Aligned_cols=22  Identities=36%  Similarity=0.508  Sum_probs=19.5

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|+++|++|+||||+++.|..
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~   29 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAK   29 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4689999999999999998864

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=83.83  E-value=0.47  Score=49.26  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=19.3

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|+++|++|+||||+++.|..
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~   34 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVK   34 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHc
Confidence            3689999999999999988863

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=83.79  E-value=0.44  Score=50.11  Aligned_cols=21  Identities=29%  Similarity=0.316  Sum_probs=18.8

Q ss_pred             ceEEEeccCCCCchHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      .-|+++|++|+||||+++.|.
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~   44 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALF   44 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            369999999999999999875

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=83.68  E-value=0.46  Score=55.08  Aligned_cols=23  Identities=22%  Similarity=0.203  Sum_probs=20.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      .-++|+|++||||||+++.|...
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cEEEEEecCCCCHHHHHHHHHhh
Confidence            35789999999999999999754

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=83.67  E-value=0.39  Score=50.52  Aligned_cols=25  Identities=20%  Similarity=0.282  Sum_probs=21.7

Q ss_pred             CccceeccCCCccchHhHHHHHhcc
Q psy4730         729 DVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       729 ~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      .+.++|+|++|||||++.+.+...+
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578899999999999999887755

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=83.55  E-value=0.49  Score=50.38  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=19.3

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|+|+|++|+||||+++.|..
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~   36 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMY   36 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999998863

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=83.53  E-value=0.38  Score=57.91  Aligned_cols=22  Identities=50%  Similarity=0.457  Sum_probs=19.3

Q ss_pred             eEEEeccCCCCchHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      -|+|+|++|+||||+++.|+..
T Consensus        33 ~I~lvG~sGaGKSTLln~L~g~   54 (418)
T 2qag_C           33 TLMVVGESGLGKSTLINSLFLT   54 (418)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4699999999999999999743

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=83.51  E-value=0.21  Score=54.99  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=19.7

Q ss_pred             EEeccCCCCchHHHHHHHHHHH
Q psy4730        1355 MVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1355 ilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .|+||+||||||++++++.++.
T Consensus        31 ~i~GpnGsGKSTll~~i~g~~~   52 (227)
T 1qhl_A           31 TLSGGNGAGKSTTMAAFVTALI   52 (227)
T ss_dssp             HHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEECCCCCCHHHHHHHHhcccc
Confidence            5789999999999999988764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=83.48  E-value=0.5  Score=49.28  Aligned_cols=20  Identities=30%  Similarity=0.320  Sum_probs=18.6

Q ss_pred             eEEEeccCCCCchHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      -|+++|++|+||||+++.|.
T Consensus        20 ki~v~G~~~~GKSsl~~~l~   39 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFF   39 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999886

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=83.32  E-value=0.51  Score=49.69  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=19.0

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|+|+|++|+||||+++.|..
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~   36 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYS   36 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999987754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=83.25  E-value=0.54  Score=49.76  Aligned_cols=23  Identities=30%  Similarity=0.414  Sum_probs=19.5

Q ss_pred             cceEEEeccCCCCchHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      ..-|+++|++|+||||+++.|..
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            34789999999999999998863

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=83.24  E-value=0.59  Score=50.41  Aligned_cols=26  Identities=15%  Similarity=0.176  Sum_probs=22.6

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .-.+|+||+||||||++.++.-++..
T Consensus        24 ~~~~I~G~NgsGKStil~ai~~~l~g   49 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAILVGLYW   49 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            36789999999999999999887763

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=83.13  E-value=0.48  Score=52.27  Aligned_cols=22  Identities=18%  Similarity=0.360  Sum_probs=19.5

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|+|+|++|+||||+++.|..
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g   51 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILG   51 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHcC
Confidence            4689999999999999998863

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=83.10  E-value=0.3  Score=53.76  Aligned_cols=23  Identities=22%  Similarity=0.278  Sum_probs=20.1

Q ss_pred             ceEEEeccCCCCchHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      .-|.|+|++||||||+++.|+..
T Consensus        21 ~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           21 FTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            35889999999999999998765

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=83.06  E-value=0.53  Score=49.55  Aligned_cols=22  Identities=36%  Similarity=0.454  Sum_probs=19.3

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      --|+|+|++|+||||+++.|..
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYAD   44 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            3689999999999999998853

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=83.06  E-value=0.38  Score=50.87  Aligned_cols=27  Identities=30%  Similarity=0.282  Sum_probs=22.2

Q ss_pred             hcCCccceeccCCCccchHhHHHHHhc
Q psy4730         726 LQNDVPMMFVGPTGTGKSTIVLNLLLN  752 (1513)
Q Consensus       726 ~~~~~~~ll~G~~g~GKt~~v~~~~~~  752 (1513)
                      +..+..+.|+||+||||||+.+.+...
T Consensus         6 i~~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            6 DLGGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence            345677899999999999999877653

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=83.01  E-value=0.53  Score=49.00  Aligned_cols=20  Identities=30%  Similarity=0.346  Sum_probs=18.4

Q ss_pred             eEEEeccCCCCchHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      -|+++|++|+||||+++.|.
T Consensus         7 ~i~~~G~~~~GKssl~~~l~   26 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYT   26 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999998885

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=83.00  E-value=0.52  Score=49.84  Aligned_cols=22  Identities=18%  Similarity=0.206  Sum_probs=19.6

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|+++|++|+||||+++.|..
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHc
Confidence            4699999999999999999864

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=82.91  E-value=0.66  Score=57.58  Aligned_cols=45  Identities=20%  Similarity=0.286  Sum_probs=33.9

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCCh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITM 1403 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~ 1403 (1513)
                      ..+++.|.||||||++++.+...+-.-..       ...+.++.|+||...+
T Consensus       215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~s-------P~ev~lilIDpKg~eL  259 (574)
T 2iut_A          215 PHLLVAGTTGSGKSVGVNAMLLSILFKST-------PSEARLIMIDPKMLEL  259 (574)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHHTTCC-------TTTEEEEEECSSSHHH
T ss_pred             CeeEEECCCCCCHHHHHHHHHHHHHHhCC-------CcceEEEEeCCChhhh
Confidence            57899999999999999998776542110       1147899999997543

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=82.83  E-value=0.59  Score=52.99  Aligned_cols=27  Identities=19%  Similarity=0.084  Sum_probs=23.2

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ...-++|+||+||||||+...++..+.
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            456899999999999999999987654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=82.79  E-value=0.55  Score=56.63  Aligned_cols=27  Identities=33%  Similarity=0.256  Sum_probs=24.0

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      ..-|+++|++||||||++..|+..+..
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~  123 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKK  123 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            357899999999999999999988865

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=82.79  E-value=0.52  Score=56.94  Aligned_cols=36  Identities=31%  Similarity=0.361  Sum_probs=31.1

Q ss_pred             CCCCCCCCCCCccchHHHHHHhcCEEEEEEcCCCCC
Q psy4730         663 GAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPT  698 (1513)
Q Consensus       663 ~~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~~~  698 (1513)
                      ..+.||+|||||++++.||+.+|.+++.++|+...+
T Consensus        53 iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~   88 (444)
T 1g41_A           53 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE   88 (444)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC-
T ss_pred             EEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcc
Confidence            345799999999999999999999999999975543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=82.75  E-value=0.55  Score=49.40  Aligned_cols=22  Identities=27%  Similarity=0.376  Sum_probs=19.4

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|+++|++|+||||+++.|..
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            4699999999999999998853

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=82.73  E-value=0.54  Score=49.70  Aligned_cols=22  Identities=14%  Similarity=0.231  Sum_probs=19.5

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      --|+++|++|+||||+++.|..
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~   45 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQ   45 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhc
Confidence            4699999999999999998853

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=82.72  E-value=0.82  Score=53.87  Aligned_cols=22  Identities=23%  Similarity=0.376  Sum_probs=19.6

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|+++|++|+||||+++.|+.
T Consensus       168 ~~v~lvG~~gvGKSTLin~L~~  189 (357)
T 2e87_A          168 PTVVIAGHPNVGKSTLLKALTT  189 (357)
T ss_dssp             CEEEEECSTTSSHHHHHHHHCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4689999999999999999864

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=82.67  E-value=0.56  Score=48.70  Aligned_cols=22  Identities=23%  Similarity=0.238  Sum_probs=19.3

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      --|+++|++|+||||+++.+..
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~   30 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTS   30 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4699999999999999988863

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=82.67  E-value=0.52  Score=48.88  Aligned_cols=25  Identities=44%  Similarity=0.634  Sum_probs=21.1

Q ss_pred             CccceeccCCCccchHhHHHHHhcc
Q psy4730         729 DVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       729 ~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      +..+.|+|++|||||++.+.+...+
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l   28 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQL   28 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4678899999999999998876654

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=82.67  E-value=0.59  Score=50.95  Aligned_cols=26  Identities=27%  Similarity=0.295  Sum_probs=23.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .-|++.|++||||||..+.|++.+..
T Consensus         6 ~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            6 KLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            46889999999999999999998864

>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}

Probab=82.56  E-value=1.4  Score=48.14  Aligned_cols=48  Identities=15%  Similarity=0.145  Sum_probs=32.4

Q ss_pred             HHHHHHHHHcCccccHHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHH
Q psy4730        1320 EQIKINLAKRNAQATDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQT 1370 (1513)
Q Consensus      1320 ~~i~~~~~~~~l~~~~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~ 1370 (1513)
                      ..+.+.+.+.|+..-..+...++.   .+..++.+++.+|||||||.++-.
T Consensus        34 ~~l~~~l~~~~~~~~~~~Q~~~i~---~~~~~~~~li~a~TGsGKT~~~~~   81 (236)
T 2pl3_A           34 KKTLKGLQEAQYRLVTEIQKQTIG---LALQGKDVLGAAKTGSGKTLAFLV   81 (236)
T ss_dssp             HHHHHHHHHTTCCBCCHHHHHHHH---HHHTTCCEEEECCTTSCHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHH---HHhCCCCEEEEeCCCCcHHHHHHH
Confidence            455666667777544444444443   234567899999999999997654

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=82.54  E-value=0.56  Score=49.36  Aligned_cols=21  Identities=19%  Similarity=0.227  Sum_probs=18.7

Q ss_pred             ceEEEeccCCCCchHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      -=|+|+|++|+||||+++.+.
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~   41 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYL   41 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            379999999999999998775

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=82.54  E-value=0.58  Score=55.41  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.5

Q ss_pred             eEEEeccCCCCchHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      -++|+||+||||||++.++.-++
T Consensus        25 ~~~i~G~NGaGKTTll~ai~~al   47 (365)
T 3qf7_A           25 ITVVEGPNGAGKSSLFEAISFAL   47 (365)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            57799999999999999998765

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=82.40  E-value=0.46  Score=49.07  Aligned_cols=23  Identities=30%  Similarity=0.359  Sum_probs=19.9

Q ss_pred             cceeccCCCccchHhHHHHHhcc
Q psy4730         731 PMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       731 ~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      .++|+|++|||||++.+.+...+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46799999999999999887654

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=82.39  E-value=0.57  Score=49.91  Aligned_cols=22  Identities=23%  Similarity=0.374  Sum_probs=19.4

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|+++|++|+||||+++.|..
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~   30 (207)
T 1vg8_A            9 LKVIILGDSGVGKTSLMNQYVN   30 (207)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHc
Confidence            4689999999999999998853

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=82.35  E-value=0.57  Score=50.06  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=19.3

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|+|+|++|+||||+++.|..
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~   30 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSD   30 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            3689999999999999998853

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=82.33  E-value=0.57  Score=49.40  Aligned_cols=21  Identities=38%  Similarity=0.498  Sum_probs=19.1

Q ss_pred             eEEEeccCCCCchHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      -|+|+|++|+||||+++.|..
T Consensus        25 ki~v~G~~~~GKSsli~~l~~   45 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYAD   45 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            689999999999999998864

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=82.32  E-value=0.52  Score=49.37  Aligned_cols=21  Identities=33%  Similarity=0.468  Sum_probs=19.0

Q ss_pred             ceEEEeccCCCCchHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      .-|+++|++|+||||+++.|.
T Consensus        17 ~ki~ivG~~~vGKSsL~~~l~   37 (181)
T 1fzq_A           17 VRILLLGLDNAGKTTLLKQLA   37 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            469999999999999999885

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=82.31  E-value=0.59  Score=57.10  Aligned_cols=25  Identities=20%  Similarity=0.205  Sum_probs=21.9

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..+-|+||+||||||++++|+..+.
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~   54 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALI   54 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCC
Confidence            4788999999999999999987653

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=82.30  E-value=0.59  Score=49.29  Aligned_cols=20  Identities=30%  Similarity=0.431  Sum_probs=18.6

Q ss_pred             eEEEeccCCCCchHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      -|+++|++|+||||+++.|.
T Consensus        18 ki~v~G~~~~GKSsli~~l~   37 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFA   37 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHH
Confidence            59999999999999999886

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=82.28  E-value=0.42  Score=49.78  Aligned_cols=22  Identities=27%  Similarity=0.357  Sum_probs=19.3

Q ss_pred             cceEEEeccCCCCchHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      ..-|+++|++|+||||+++.|.
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHh
Confidence            4579999999999999998774

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=82.28  E-value=0.59  Score=49.32  Aligned_cols=21  Identities=19%  Similarity=0.401  Sum_probs=18.9

Q ss_pred             eEEEeccCCCCchHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      -|+++|++|+||||+++.|..
T Consensus        23 ki~v~G~~~~GKSsli~~l~~   43 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTD   43 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            589999999999999998863

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=82.25  E-value=0.56  Score=48.80  Aligned_cols=21  Identities=14%  Similarity=0.224  Sum_probs=19.0

Q ss_pred             ceEEEeccCCCCchHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      .-|+++|++|+||||+++.|.
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~   27 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFV   27 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHH
Confidence            468999999999999999886

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=82.23  E-value=0.59  Score=49.20  Aligned_cols=22  Identities=36%  Similarity=0.513  Sum_probs=19.5

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-|+|+|++|+||||+++.|..
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~   44 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIAS   44 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHc
Confidence            4699999999999999998853

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=82.13  E-value=0.59  Score=49.83  Aligned_cols=23  Identities=17%  Similarity=0.320  Sum_probs=20.0

Q ss_pred             cceEEEeccCCCCchHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      ..-|+|+|++|+||||+++.|..
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l~~   46 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQFVE   46 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCcCHHHHHHHHHh
Confidence            34699999999999999998863

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=82.12  E-value=0.51  Score=52.21  Aligned_cols=24  Identities=25%  Similarity=0.282  Sum_probs=21.9

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|.+.|++||||||..+.|++.+.
T Consensus         4 ~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            4 RLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC
Confidence            488999999999999999998874

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=82.12  E-value=0.6  Score=49.20  Aligned_cols=22  Identities=18%  Similarity=0.258  Sum_probs=19.3

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      --|+++|++|+||||+++.|..
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~   43 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLT   43 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHh
Confidence            3699999999999999988863

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=82.08  E-value=0.6  Score=49.47  Aligned_cols=22  Identities=18%  Similarity=0.179  Sum_probs=19.6

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      --|+++|++|+||||+++.|..
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~~   50 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFLT   50 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999998864

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=82.08  E-value=0.62  Score=57.83  Aligned_cols=26  Identities=27%  Similarity=0.229  Sum_probs=23.6

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .-|+|+|.|||||||+.+.|++.++.
T Consensus        36 ~lIvlvGlpGSGKSTia~~La~~L~~   61 (520)
T 2axn_A           36 TVIVMVGLPARGKTYISKKLTRYLNW   61 (520)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            46999999999999999999998864

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=82.00  E-value=0.81  Score=54.64  Aligned_cols=27  Identities=19%  Similarity=0.218  Sum_probs=22.5

Q ss_pred             cceEEE--eccCCCCchHHHHHHHHHHHh
Q psy4730        1351 RHGLMV--VGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1351 ~~gvil--vG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      ...++|  +||+|+||||+++.+++.+..
T Consensus        50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~   78 (412)
T 1w5s_A           50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSE   78 (412)
T ss_dssp             CEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence            346788  899999999999999877653

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=81.88  E-value=1  Score=52.42  Aligned_cols=31  Identities=29%  Similarity=0.369  Sum_probs=26.0

Q ss_pred             CCCCCCCCCCccchHHHHHHhcCEEEEEEcCCC
Q psy4730         664 APEGPAGTGKTETSKDLAKAVAKQCIVFNCSDR  696 (1513)
Q Consensus       664 ~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~  696 (1513)
                      .+.||+|+|||++.+.||+.+|  +.++++++-
T Consensus        11 ~I~GptgSGKTtla~~La~~l~--~~iis~Ds~   41 (340)
T 3d3q_A           11 VIVGPTASGKTELSIEVAKKFN--GEIISGDSM   41 (340)
T ss_dssp             EEECSTTSSHHHHHHHHHHHTT--EEEEECCSS
T ss_pred             EEECCCcCcHHHHHHHHHHHcC--Cceeccccc
Confidence            4679999999999999999999  456777654

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=81.86  E-value=0.57  Score=50.06  Aligned_cols=27  Identities=22%  Similarity=0.537  Sum_probs=22.6

Q ss_pred             cCCccceeccCCCccchHhHHHHHhcc
Q psy4730         727 QNDVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       727 ~~~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      ..+..+.|+||+|||||++++.+...+
T Consensus         4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            4 EKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            356778899999999999999887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1513
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	98.65
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	98.13
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.06
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.98
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.91
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.89
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.83
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.81
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.76
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.68
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	97.67
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.6
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.6
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.56
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	97.51
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.47
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	97.47
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.45
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.4
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	97.37
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.32
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.31
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.29
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.28
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.24
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.2
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	97.18
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.12
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.09
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.03
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.88
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.87
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.86
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.82
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	96.81
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.8
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.71
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.69
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.61
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.61
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	96.55
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.48
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.42
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.39
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.26
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.09
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.0
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.0
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	95.98
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.98
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.92
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.8
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.76
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	95.69
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.65
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	95.64
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	95.61
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	95.49
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	95.46
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	95.39
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.36
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	95.2
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.18
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.16
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	95.08
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.08
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	95.05
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	95.04
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	95.01
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	95.0
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.88
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	94.85
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	94.81
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	94.8
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	94.65
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	94.63
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	94.62
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	94.49
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	94.48
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.43
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	94.39
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.37
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.36
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	94.34
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	94.3
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.25
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.23
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	94.2
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	94.11
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	94.06
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	94.05
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	94.03
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.51
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	93.51
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	93.42
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	93.32
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	93.2
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	93.12
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	93.1
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	93.02
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	92.86
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	92.79
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.79
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.77
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	92.6
d1j8yf2	211	GTPase domain of the signal sequence recognition p	92.54
d2qy9a2	211	GTPase domain of the signal recognition particle r	92.22
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	92.1
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	92.01
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	91.96
d1vmaa2	213	GTPase domain of the signal recognition particle r	91.93
d1okkd2	207	GTPase domain of the signal recognition particle r	91.87
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	91.76
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	91.72
d1ls1a2	207	GTPase domain of the signal sequence recognition p	91.56
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	91.5
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	91.31
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	91.27
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	91.13
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	91.02
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	90.94
d2awna2	232	Maltose transport protein MalK, N-terminal domain	90.93
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	90.91
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	90.83
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	90.75
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	90.63
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	90.61
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	90.61
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	90.55
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	90.51
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	90.48
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	90.37
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	90.31
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	90.26
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	90.12
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	90.1
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	90.09
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	90.08
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	90.04
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	90.01
d1g2912	240	Maltose transport protein MalK, N-terminal domain	90.01
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	89.96
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	89.91
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	89.91
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	89.85
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	89.75
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	89.73
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	89.7
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	89.56
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	89.56
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	89.53
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	89.53
d2qy9a2	211	GTPase domain of the signal recognition particle r	89.51
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	89.36
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	89.31
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	89.3
d1okkd2	207	GTPase domain of the signal recognition particle r	89.26
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	89.09
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	89.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	88.92
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	88.89
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	88.74
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	88.68
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	88.59
d1vmaa2	213	GTPase domain of the signal recognition particle r	88.56
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	88.36
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	88.34
d1nrjb_	209	Signal recognition particle receptor beta-subunit	88.2
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	88.08
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	88.03
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	87.64
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	87.6
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	87.46
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	87.4
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	87.33
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	87.15
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	87.12
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	87.08
d1ls1a2	207	GTPase domain of the signal sequence recognition p	87.03
d1j8yf2	211	GTPase domain of the signal sequence recognition p	87.01
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	86.99
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	86.95
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	86.95
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	86.94
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	86.61
d2fh5b1	207	Signal recognition particle receptor beta-subunit	86.5
d1tuea_	205	Replication protein E1 helicase domain {Human papi	86.48
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	86.48
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	86.47
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	86.41
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	86.33
d1tuea_	205	Replication protein E1 helicase domain {Human papi	86.25
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	86.19
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	86.09
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	86.01
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	86.01
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	85.96
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	85.73
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	85.73
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	85.71
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	85.68
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	85.67
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	85.49
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	85.48
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	85.47
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	85.32
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	85.31
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	85.27
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	85.18
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	85.07
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	85.04
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	85.02
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	85.01
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	85.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	84.95
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	84.87
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	84.82
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	84.82
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	84.78
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	84.74
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	84.66
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	84.61
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	84.56
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	84.54
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	84.46
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	84.14
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	84.07
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	84.05
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	84.01
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	83.97
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	83.87
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	83.87
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	83.86
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	83.79
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	83.73
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	83.67
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	83.6
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	83.54
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	83.54
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	83.5
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	83.46
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	83.43
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	83.41
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	83.39
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	83.25
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	83.22
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	83.18
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	83.17
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	83.14
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	82.93
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	82.93
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	82.92
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	82.86
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	82.82
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	82.79
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	82.75
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	82.72
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	82.72
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	82.67
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	82.63
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	82.57
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	82.53
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	82.5
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	82.49
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	82.44
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	82.38
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	82.26
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	82.18
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	82.17
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	82.15
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	82.09
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	81.98
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	81.79
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	81.73
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	81.71
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	81.71
d2fh5b1	207	Signal recognition particle receptor beta-subunit	81.65
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	81.6
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	81.6
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	81.58
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	81.54
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	81.51
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	81.5
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	81.44
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	81.41
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	81.35
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	81.35
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	81.35
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	81.28
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	81.25
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	81.03
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	81.03
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	80.96
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	80.91
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	80.82
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	80.75
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	80.72
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	80.69
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	80.64
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	80.57
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	80.55
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	80.29
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	80.25
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	80.17
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	80.15
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	80.11

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=6.6e-09  Score=111.60  Aligned_cols=154  Identities=13%  Similarity=0.059  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcc-cccccceeEEEecCCCCChhhccccccCC
Q psy4730        1335 DWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSA-TMKEFKTGYKIINPKSITMGQLYGEFDSA 1413 (1513)
Q Consensus      1335 ~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~-~~~~~~~~~~~inp~~~t~~eL~G~~~~~ 1413 (1513)
                      .....+..+.++.-+..|++++.||+|+||||+++.+++.+......... +..+       .++..+......+.+...
T Consensus         8 ~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~   80 (207)
T d1a5ta2           8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHC-------RGCQLMQAGTHPDYYTLA   80 (207)
T ss_dssp             HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCS-------HHHHHHHHTCCTTEEEEC
T ss_pred             HHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhccccccccccccccc-------chhhhhhhccccccchhh
Confidence            34456666666666677899999999999999999999988532111100 0000       000000001111111112


Q ss_pred             CCCCccCHHHHHHHHhhc-----cCCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCC
Q psy4730        1414 SHEWRDGILAKTFREMAV-----STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE 1488 (1513)
Q Consensus      1414 t~eW~DG~l~~~lR~~~~-----~~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~ 1488 (1513)
                      ..++...+-...+|+...     ......++||+| ++|....++.|++|-   .|-       ..|+++.|||-|.+++
T Consensus        81 ~~~~~~~i~~~~ir~l~~~~~~~~~~~~~kviIid-e~d~l~~~a~n~Llk---~lE-------ep~~~~~fIl~t~~~~  149 (207)
T d1a5ta2          81 PEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVT-DAALLTDAAANALLK---TLE-------EPPAETWFFLATREPE  149 (207)
T ss_dssp             CCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEES-CGGGBCHHHHHHHHH---HHT-------SCCTTEEEEEEESCGG
T ss_pred             hhhcccccccchhhHHhhhhhhccccCccceEEec-hhhhhhhhhhHHHHH---HHH-------hhcccceeeeeecChh
Confidence            223444444555554432     223567899999 577777788888761   111       0378899999999999


Q ss_pred             CCCcchhhccEEEEeeCC
Q psy4730        1489 FASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1489 ~asPatvsRcg~v~~~~~ 1506 (1513)
                      ..-|+-.|||-.|+|.+-
T Consensus       150 ~ll~tI~SRc~~i~~~~~  167 (207)
T d1a5ta2         150 RLLATLRSRCRLHYLAPP  167 (207)
T ss_dssp             GSCHHHHTTSEEEECCCC
T ss_pred             hhhhhhcceeEEEecCCC
Confidence            999999999999999754

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=2e-06  Score=89.53  Aligned_cols=66  Identities=15%  Similarity=0.146  Sum_probs=46.9

Q ss_pred             hccCC--CCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC--C--CCCChhhhccceEeecCCCCh
Q psy4730         892 DDLNM--PQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT--M--NTITGRLLRHMNIISIDSFNE  965 (1513)
Q Consensus       892 dd~n~--p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~--~--~~~~~r~~~~f~~~~~~~~~~  965 (1513)
                      ||++.  ......|+-.+-.+|+-++..|              ++++|||+-|.  +  ..-+|.|.|||..+.+++|+.
T Consensus       122 Deih~l~~~g~~~g~~d~~~~Lkp~L~rg--------------~l~~IgatT~eey~~~~e~d~aL~rrF~~I~V~Ep~~  187 (195)
T d1jbka_         122 DELHTMVGAGKADGAMDAGNMLKPALARG--------------ELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSV  187 (195)
T ss_dssp             ETGGGGTT------CCCCHHHHHHHHHTT--------------SCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCH
T ss_pred             chHHHHhcCCCCCCcccHHHHHHHHHhCC--------------CceEEecCCHHHHHHHHHcCHHHHhcCCEeecCCCCH
Confidence            77772  2222345566778888888754              45789999987  2  356899999999999999999


Q ss_pred             HHHHHH
Q psy4730         966 ATLSKI  971 (1513)
Q Consensus       966 ~~l~~i  971 (1513)
                      ++-.+|
T Consensus       188 e~t~~I  193 (195)
T d1jbka_         188 EDTIAI  193 (195)
T ss_dssp             HHHHTT
T ss_pred             HHHHHH
Confidence            876554

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=6.4e-06  Score=90.51  Aligned_cols=45  Identities=16%  Similarity=0.060  Sum_probs=38.4

Q ss_pred             ceEEEEeecCC--C--CCCChhhhccceEeecCCCChHHHHHHHHHHhh
Q psy4730         933 DIIYITAMIPT--M--NTITGRLLRHMNIISIDSFNEATLSKIFTSVLD  977 (1513)
Q Consensus       933 ~~~~~~a~~~~--~--~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~  977 (1513)
                      ++++||++.|.  +  -.-+|.|.|||..+.+++|+.++..+|...+..
T Consensus       147 ~i~vIgatT~eey~~~~e~d~al~rrF~~I~V~Eps~e~t~~IL~~~~~  195 (268)
T d1r6bx2         147 KIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKP  195 (268)
T ss_dssp             CCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHH
T ss_pred             CCeEEEeCCHHHHHHHHhhcHHHHhhhcccccCCCCHHHHHHHHHHhhH
Confidence            67899999997  2  356899999999999999999999999887443

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=8.9e-06  Score=89.30  Aligned_cols=46  Identities=17%  Similarity=0.133  Sum_probs=39.0

Q ss_pred             ceEEEEeecCCCCCCChhhhc--cc-eEeecCCCChHHHHHHHHHHhhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLR--HM-NIISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~--~f-~~~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      .+.+|||+|.|.. |+|.++|  || ..++++.|+.++...|+..++..+
T Consensus       150 ~v~vIatTn~~~~-ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~  198 (256)
T d1lv7a_         150 GIIVIAATNRPDV-LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV  198 (256)
T ss_dssp             CEEEEEEESCTTT-SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS
T ss_pred             CEEEEEeCCCccc-CCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCC
Confidence            5678888887744 8999998  89 789999999999999999887654

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=4.5e-06  Score=92.14  Aligned_cols=46  Identities=15%  Similarity=0.087  Sum_probs=38.3

Q ss_pred             ceEEEEeecCCCCCCChhhhc--cc-eEeecCCCChHHHHHHHHHHhhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLR--HM-NIISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~--~f-~~~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      ++.++||+|.+.. ++|.++|  || ..++++.|+.++-..|+..++...
T Consensus       140 ~vlvi~tTn~~~~-ld~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~  188 (258)
T d1e32a2         140 HVIVMAATNRPNS-IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM  188 (258)
T ss_dssp             CEEEEEEESCGGG-SCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTTS
T ss_pred             CccEEEeCCCccc-cchhhhhcccccceeECCCCCHHHHHHHhhhhccCc
Confidence            4778888887643 8888988  89 669999999999999999887653

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.89  E-value=2e-05  Score=87.04  Aligned_cols=46  Identities=22%  Similarity=0.238  Sum_probs=38.1

Q ss_pred             ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      ++.++||+|.+. .|+|.++|  ||. .+.++.|+.+....|+..++..+
T Consensus       146 ~v~vi~ttn~~~-~ld~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~  194 (265)
T d1r7ra3         146 NVFIIGATNRPD-IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS  194 (265)
T ss_dssp             CCEEEECCBSCT-TTSCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC
T ss_pred             CEEEEEeCCCch-hCCHHHhCCCCccEEEEecchHHHHHHHHHHHHhccC
Confidence            467888888776 49999987  787 49999999999999998876543

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.83  E-value=1.1e-05  Score=93.58  Aligned_cols=74  Identities=16%  Similarity=0.164  Sum_probs=44.3

Q ss_pred             hhccCCC--CCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC---CCCCChhhhccceEeecCCCCh
Q psy4730         891 LDDLNMP--QKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT---MNTITGRLLRHMNIISIDSFNE  965 (1513)
Q Consensus       891 ~dd~n~p--~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~---~~~~~~r~~~~f~~~~~~~~~~  965 (1513)
                      +|+++.-  ....-|+-.+-.+|+-++..|              ++++|||+.|.   ...=++.|.|||..+.+++|+.
T Consensus       121 ide~h~l~~~g~~~g~~d~a~~Lkp~L~rg--------------~~~~I~~tT~~ey~~~e~d~al~rrF~~v~v~ep~~  186 (387)
T d1qvra2         121 IDELHTVVGAGKAEGAVDAGNMLKPALARG--------------ELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTV  186 (387)
T ss_dssp             ECCC-------------------HHHHHTT--------------CCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCH
T ss_pred             eccHHHHhcCCCCCCcccHHHHHHHHHhCC--------------CcceeeecCHHHHHHhcccHHHHHhcccccCCCCcH
Confidence            3666622  111223344556777777654              45788999986   1223789999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q psy4730         966 ATLSKIFTSVLDW  978 (1513)
Q Consensus       966 ~~l~~i~~~~l~~  978 (1513)
                      ++..+|...+-..
T Consensus       187 ~~~~~il~~~~~~  199 (387)
T d1qvra2         187 EETISILRGLKEK  199 (387)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998876544

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.81  E-value=1.2e-05  Score=87.92  Aligned_cols=45  Identities=20%  Similarity=0.226  Sum_probs=37.5

Q ss_pred             ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+.++||+|.| ..++|.++|  ||. .++++.|+.+....|+..++..
T Consensus       147 ~vivi~tTn~~-~~ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~  194 (247)
T d1ixza_         147 AIVVMAATNRP-DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG  194 (247)
T ss_dssp             CEEEEEEESCG-GGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTT
T ss_pred             CEEEEEeCCCc-cccCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcc
Confidence            46678888874 468999997  895 8999999999999999988754

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.76  E-value=2.6e-05  Score=83.74  Aligned_cols=122  Identities=15%  Similarity=0.155  Sum_probs=73.0

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
                      +.++|.|||||||||+++.+++.+..-..         ...+..+|.........+           ...+.........
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~l~~~~~---------~~~~~~~n~~~~~~~~~i-----------~~~~~~~~~~~~~   96 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHELLGRSY---------ADGVLELNASDDRGIDVV-----------RNQIKHFAQKKLH   96 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHHGGGH---------HHHEEEECTTSCCSHHHH-----------HTHHHHHHHBCCC
T ss_pred             CeEEEECCCCCCchhhHHHHHHHHhcccc---------ccccccccccccCCceeh-----------hhHHHHHHHhhcc
Confidence            35899999999999999999998763111         122344454432211000           0011111111112


Q ss_pred             cCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeCC
Q psy4730        1432 STTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1432 ~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
                      ......+.+|+|.  .+...+...|-..++             ..+.+..+++-+.+.....|+..|||-.|.|.+-
T Consensus        97 ~~~~~~kviiiDe~d~~~~~~~~~ll~~~e-------------~~~~~~~~i~~~~~~~~i~~~l~sr~~~i~~~~~  160 (224)
T d1sxjb2          97 LPPGKHKIVILDEADSMTAGAQQALRRTME-------------LYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKL  160 (224)
T ss_dssp             CCTTCCEEEEEESGGGSCHHHHHTTHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred             CCCcceEEEEEecccccchhHHHHHhhhcc-------------ccccceeeeeccCchhhhhhHHHHHHHHhhhccc
Confidence            2234668999995  223333322222221             2466788999999999999999999999998874

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.68  E-value=0.00012  Score=78.70  Aligned_cols=45  Identities=9%  Similarity=0.195  Sum_probs=36.8

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .+.++++++.+ ..+.+.+.+||..+.+++|+...+..+...++..
T Consensus       139 ~~~~i~~~n~~-~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~  183 (231)
T d1iqpa2         139 NVRFILSCNYS-SKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAEN  183 (231)
T ss_dssp             TEEEEEEESCG-GGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHT
T ss_pred             ceEEEeccCCh-hhchHhHhCccccccccccchhhHHHHHHHHHHH
Confidence            45667777764 3578889999999999999999999999887653

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=97.67  E-value=1.7e-05  Score=90.87  Aligned_cols=150  Identities=19%  Similarity=0.258  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccc------------c--c----cceeEEEecCCCC
Q psy4730        1340 KIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATM------------K--E----FKTGYKIINPKSI 1401 (1513)
Q Consensus      1340 k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~------------~--~----~~~~~~~inp~~~ 1401 (1513)
                      ..+.|..+....|+|+|+||||+|||++.+.++..+-.+........            .  .    ......+-.+...
T Consensus        17 ral~laa~~~~~h~vLl~G~pG~GKT~lar~~~~iLp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (333)
T d1g8pa_          17 LALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGV   96 (333)
T ss_dssp             HHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTC
T ss_pred             HHHHHHHhccCCCeEEEECCCCccHHHHHHHHHHhCCCchhhccCccccCccccccchhhccccCcccccCceeeccCCC
Confidence            33444444445689999999999999999999987743221110000            0  0    0011234557788


Q ss_pred             ChhhccccccCC------CCCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeec-CCCee
Q psy4730        1402 TMGQLYGEFDSA------SHEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLI-NGEII 1472 (1513)
Q Consensus      1402 t~~eL~G~~~~~------t~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~-nGe~i 1472 (1513)
                      +...++|.+|..      ...+..|.++.+=          ..-+++|  +..++...+.|-.+|++. ..++. .|..+
T Consensus        97 ~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A~----------~gvl~iDEi~~~~~~~~~aLl~~me~~-~v~i~r~g~~~  165 (333)
T d1g8pa_          97 SEDRVVGALDIERAISKGEKAFEPGLLARAN----------RGYLYIDECNLLEDHIVDLLLDVAQSG-ENVVERDGLSI  165 (333)
T ss_dssp             CHHHHHCEECHHHHHHHCGGGEECCHHHHHT----------TEEEEETTGGGSCHHHHHHHHHHHHHS-EEEECCTTCCE
T ss_pred             CcccccCcchhhhccccCcceeecccccccc----------ccEeecccHHHHHHHHHHHHhhhhcCC-eEEecccCcee
Confidence            899999988742      2235568877652          2567788  677899999999999876 55655 68889


Q ss_pred             ecCCCCeEEEeecCC-CCCCcchhhccEE
Q psy4730        1473 KMSNTMNLIFECENL-EFASPATVSRVGM 1500 (1513)
Q Consensus      1473 ~~~~~~~~iFE~~~l-~~asPatvsRcg~ 1500 (1513)
                      .+|..+.++..+..- ...+||-..|+.+
T Consensus       166 ~~p~~f~liaa~Np~~~~l~~~llDRf~~  194 (333)
T d1g8pa_         166 RHPARFVLVGSGNPEEGDLRPQLLDRFGL  194 (333)
T ss_dssp             EEECCEEEEEEECSCSCCCCHHHHTTCSE
T ss_pred             cCCCCEEEEEecCccccccccchhhhhcc
Confidence            999887666644332 4589999999976

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.60  E-value=7e-05  Score=80.29  Aligned_cols=45  Identities=13%  Similarity=0.199  Sum_probs=36.3

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ...++.++++. ..+.+.+++|+..+.+++|+.+++..+...++..
T Consensus       131 ~~~~i~~~~~~-~~i~~~l~sr~~~i~~~~~~~~~i~~~l~~i~~~  175 (224)
T d1sxjb2         131 STRFAFACNQS-NKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKL  175 (224)
T ss_dssp             TEEEEEEESCG-GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             ceeeeeccCch-hhhhhHHHHHHHHhhhcccchhhhHHHHHHHHHh
Confidence            44556666553 4588999999999999999999999999988753

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.60  E-value=0.00024  Score=76.63  Aligned_cols=46  Identities=13%  Similarity=0.200  Sum_probs=36.1

Q ss_pred             cceEEEEeecCCCCCCChhhhccceE-eecCCCChHHHHHHHHHHhhh
Q psy4730         932 VDIIYITAMIPTMNTITGRLLRHMNI-ISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       932 ~~~~~~~a~~~~~~~~~~r~~~~f~~-~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ..+.+|+|++.+.. +++.+++||.. +.++.|+.+.+..+...+...
T Consensus       133 ~~~~~I~at~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~  179 (238)
T d1in4a2         133 QPFTLVGATTRSGL-LSSPLRSRFGIILELDFYTVKELKEIIKRAASL  179 (238)
T ss_dssp             CCCEEEEEESCGGG-SCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEecCCCcc-ccccceeeeeEEEEecCCCHHHHHHHHHHhhhh
Confidence            46778888887643 56677777765 799999999999999887654

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.56  E-value=0.00031  Score=76.29  Aligned_cols=43  Identities=7%  Similarity=-0.113  Sum_probs=32.8

Q ss_pred             EEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         936 YITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       936 ~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ++.+++.+.....+.+.|++..+.+++|+.+.+..+...++..
T Consensus       157 ii~i~~~~~~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~i~~~  199 (253)
T d1sxja2         157 LILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR  199 (253)
T ss_dssp             EEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccceeeeeeccccchhHHHHHHHHHHHH
Confidence            4455555444444568899999999999999999999888753

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.51  E-value=0.0007  Score=73.40  Aligned_cols=71  Identities=13%  Similarity=0.188  Sum_probs=46.9

Q ss_pred             HHHHHHHHhcCCccccCCceeeeecceEEEEeecCC------CCCCChhhhccceEeecCCCC----hHHHHHHHHHHhh
Q psy4730         908 VELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------MNTITGRLLRHMNIISIDSFN----EATLSKIFTSVLD  977 (1513)
Q Consensus       908 le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------~~~~~~r~~~~f~~~~~~~~~----~~~l~~i~~~~l~  977 (1513)
                      .+.|-++++.+.++..++.... ..|+++|++++.+      ...+.++|+.++..+.+.-|+    .+++..|+..++.
T Consensus       111 Q~~L~~~l~~~~~~~~~~~~~~-~~~~RlI~~s~~~l~~l~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~l~~~~l~  189 (247)
T d1ny5a2         111 QAKLLRVIESGKFYRLGGRKEI-EVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLK  189 (247)
T ss_dssp             HHHHHHHHHHSEECCBTCCSBE-ECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCEEECCCCCce-ecCeEEEEecCCCHHHHHHcCCCcHHHHhhcCeeeecCCChhhchhhHhhhhhhhhh
Confidence            4555566666666655433222 3378999988875      457889999988765555444    2478888888777


Q ss_pred             hh
Q psy4730         978 WH  979 (1513)
Q Consensus       978 ~~  979 (1513)
                      ..
T Consensus       190 ~~  191 (247)
T d1ny5a2         190 KF  191 (247)
T ss_dssp             HH
T ss_pred             hh
Confidence            54

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.47  E-value=5.3e-05  Score=82.58  Aligned_cols=32  Identities=19%  Similarity=0.264  Sum_probs=28.4

Q ss_pred             CCCCeEEEeecCCCCCCcchhhccEEEEeeCC
Q psy4730        1475 SNTMNLIFECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1475 ~~~~~~iFE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
                      ++++++++-+.++...-|+..|||..|+|.+-
T Consensus       159 ~~~~~~Il~tn~~~~i~~~l~sR~~~i~~~~~  190 (252)
T d1sxje2         159 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAP  190 (252)
T ss_dssp             TTTEEEEEEESCSCSSCHHHHTTSEEEECCCC
T ss_pred             cccccceeeeccccchhhhhhcchheeeeccc
Confidence            56788999999999999999999999998764

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=97.47  E-value=0.00035  Score=79.53  Aligned_cols=73  Identities=12%  Similarity=0.231  Sum_probs=56.8

Q ss_pred             HHhhccCCCCCccCCCCChHHHHHHHHhcCCcc-ccCCceeeeecceEEEEeecCCCCCCChhhhccceE-eecCCCChH
Q psy4730         889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLY-DFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNI-ISIDSFNEA  966 (1513)
Q Consensus       889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~y-d~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~-~~~~~~~~~  966 (1513)
                      +|+||+|.-..+      .++.|++.++.|-.- .+.......-.++.++||+||....+++.++.||.+ +.+++|...
T Consensus       131 l~iDEi~~~~~~------~~~aLl~~me~~~v~i~r~g~~~~~p~~f~liaa~Np~~~~l~~~llDRf~~~i~v~~~~~~  204 (333)
T d1g8pa_         131 LYIDECNLLEDH------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDV  204 (333)
T ss_dssp             EEETTGGGSCHH------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSH
T ss_pred             eecccHHHHHHH------HHHHHhhhhcCCeEEecccCceecCCCCEEEEEecCccccccccchhhhhcceeeccCcchh
Confidence            567999955543      789999999987553 444455556669999999999888899999999977 778888654


Q ss_pred             H
Q psy4730         967 T  967 (1513)
Q Consensus       967 ~  967 (1513)
                      .
T Consensus       205 ~  205 (333)
T d1g8pa_         205 E  205 (333)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.45  E-value=0.0014  Score=70.49  Aligned_cols=47  Identities=11%  Similarity=-0.026  Sum_probs=37.8

Q ss_pred             cceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         932 VDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       932 ~~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ..+.++++++.+-....+-+.|+-..+.+.+|+.+.+..|...++..
T Consensus       134 ~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~  180 (239)
T d1ixsb2         134 PRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARL  180 (239)
T ss_dssp             CCCEEEEEESCCSSCSCGGGGGCSEEEECCCCCHHHHHHHHHHHHGG
T ss_pred             CCEEEEeeccCcccccchhhcccceeeEeeccChhhhhHHHHHHHHH
Confidence            36778888888766666777777777899999999999999987654

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=0.00031  Score=76.22  Aligned_cols=45  Identities=16%  Similarity=0.175  Sum_probs=37.5

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ++.||++++.+. .+++.+.+||..+.+++|+.+.+..+...++..
T Consensus       161 ~~~~Il~tn~~~-~i~~~l~sR~~~i~~~~~~~~~~~~~l~~i~~~  205 (252)
T d1sxje2         161 NIRLIMVCDSMS-PIIAPIKSQCLLIRCPAPSDSEISTILSDVVTN  205 (252)
T ss_dssp             TEEEEEEESCSC-SSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             cccceeeecccc-chhhhhhcchheeeecccchhhHHHHHHHHHHH
Confidence            456788888763 567889999999999999999999999888654

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=0.00013  Score=79.04  Aligned_cols=134  Identities=15%  Similarity=0.157  Sum_probs=73.6

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEE-ecCCCCChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKI-INPKSITMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~-inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
                      .|+++|.||+|+||||+++.+++.+..-......... ....+.. -++...+   ++ .++..+   ..|+  ..+|+.
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~-~~~~~~~i~~~~~~~---~~-~~~~~~---~~~i--~~ir~~  103 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG-VCDNCREIEQGRFVD---LI-EIDAAS---RTKV--EDTRDL  103 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCS-CSHHHHHHHHTCCTT---EE-EEETTC---SSSH--HHHHHH
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccc-cchHHHHHHcCCCCe---EE-Eecchh---cCCH--HHHHHH
Confidence            5679999999999999999999887642111000000 0000000 0011111   11 111110   1121  233433


Q ss_pred             h----ccC-CCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEE
Q psy4730        1430 A----VST-TPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIY 1502 (1513)
Q Consensus      1430 ~----~~~-~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~ 1502 (1513)
                      .    ..+ ....+-+|+|.  .++..-...|-..+++             .+++++|++-+.+....-|+-.|||-++.
T Consensus       104 ~~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~-------------~~~~~~~il~tn~~~~i~~~i~SRc~~i~  170 (239)
T d1njfa_         104 LDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-------------PPEHVKFLLATTDPQKLPVTILSRCLQFH  170 (239)
T ss_dssp             HHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHS-------------CCTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred             HHHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhc-------------CCCCeEEEEEcCCccccChhHhhhhcccc
Confidence            2    222 24567899995  2333222333333332             36788899999999999999999999999


Q ss_pred             eeCCC
Q psy4730        1503 FELKC 1507 (1513)
Q Consensus      1503 ~~~~~ 1507 (1513)
                      +.+-.
T Consensus       171 ~~~~~  175 (239)
T d1njfa_         171 LKALD  175 (239)
T ss_dssp             CCCCC
T ss_pred             cccCc
Confidence            87643

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.32  E-value=0.00022  Score=76.58  Aligned_cols=119  Identities=19%  Similarity=0.188  Sum_probs=68.4

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
                      +.++|.||||+||||+++++++.+..-..         ......+|.....     |        +.+.  .....+...
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l~~~~~---------~~~~~e~n~s~~~-----~--------~~~~--~~~~~~~~~  101 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARELFGENW---------RHNFLELNASDER-----G--------INVI--REKVKEFAR  101 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHHGGGH---------HHHEEEEETTCHH-----H--------HHTT--HHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHhccc---------CCCeeEEecCccc-----c--------hhHH--HHHHHHHHh
Confidence            46999999999999999999998753111         1233445543211     0        1000  111111111


Q ss_pred             ---cCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeCC
Q psy4730        1432 ---STTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1432 ---~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
                         .......-+++|.  .+...-...|-.+++.             .+.++.+++.+.+....-++..|||.++.+.+-
T Consensus       102 ~~~~~~~~~~iilide~d~~~~~~~~~ll~~l~~-------------~~~~~~~i~~~n~~~~i~~~l~sR~~~i~~~~~  168 (231)
T d1iqpa2         102 TKPIGGASFKIIFLDEADALTQDAQQALRRTMEM-------------FSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPL  168 (231)
T ss_dssp             SCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHH-------------TTTTEEEEEEESCGGGSCHHHHHTEEEEECCCC
T ss_pred             hhhccCCCceEEeehhhhhcchhHHHHHhhhccc-------------CCcceEEEeccCChhhchHhHhCcccccccccc
Confidence               1123445677773  2222222333333322             134567888888888899999999999998874


Q ss_pred             C
Q psy4730        1507 C 1507 (1513)
Q Consensus      1507 ~ 1507 (1513)
                      .
T Consensus       169 ~  169 (231)
T d1iqpa2         169 R  169 (231)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.31  E-value=0.00014  Score=81.84  Aligned_cols=37  Identities=30%  Similarity=0.354  Sum_probs=32.2

Q ss_pred             CCCCCCCCCCCCccchHHHHHHhcCEEEEEEcCCCCC
Q psy4730         662 GGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPT  698 (1513)
Q Consensus       662 g~~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~~~  698 (1513)
                      |-.+.||+|||||+++|.+|+.++.+++.+++++-++
T Consensus        51 ~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~~   87 (309)
T d1ofha_          51 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE   87 (309)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSS
T ss_pred             eEEEECCCCCCHHHHHHHHhhccccchhccccccccc
Confidence            3355899999999999999999999999999986654

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.29  E-value=0.00042  Score=74.01  Aligned_cols=45  Identities=11%  Similarity=0.169  Sum_probs=36.1

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ...++.+++.+ ..+.+.+.+|+..+.+.+|+.+++.++...++..
T Consensus       129 ~~~~~~~~~~~-~~i~~~i~sr~~~i~~~~~~~~~i~~~l~~I~~~  173 (227)
T d1sxjc2         129 NTRFCVLANYA-HKLTPALLSQCTRFRFQPLPQEAIERRIANVLVH  173 (227)
T ss_dssp             TEEEEEEESCG-GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHT
T ss_pred             ceeeccccCcH-HHhHHHHHHHHhhhcccccccccccccccccccc
Confidence            34555666554 4578889999999999999999999999988754

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=0.00068  Score=76.27  Aligned_cols=81  Identities=14%  Similarity=0.291  Sum_probs=60.1

Q ss_pred             hccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC------------------------CCCC
Q psy4730         892 DDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------------------------MNTI  947 (1513)
Q Consensus       892 dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------------------------~~~~  947 (1513)
                      |++-...++      +...|=|+++.|.+.|... ..+...+..++.+.|-.                        +..+
T Consensus       128 DeieKa~~~------V~~~lLqild~G~ltd~~G-r~vdf~n~iiI~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f  200 (315)
T d1r6bx3         128 DEIEKAHPD------VFNILLQVMDNGTLTDNNG-RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIF  200 (315)
T ss_dssp             ETGGGSCHH------HHHHHHHHHHHSEEEETTT-EEEECTTEEEEEEECSSCC-----------------CHHHHHHHS
T ss_pred             cccccccch------HhhhhHHhhccceecCCCC-CccCccceEEEeccchhhHHHHhhhccchhhhhhHhHHHHHHHhc
Confidence            666554444      6788889999998887754 35677788888887742                        1358


Q ss_pred             Chhhhccce-EeecCCCChHHHHHHHHHHhhhh
Q psy4730         948 TGRLLRHMN-IISIDSFNEATLSKIFTSVLDWH  979 (1513)
Q Consensus       948 ~~r~~~~f~-~~~~~~~~~~~l~~i~~~~l~~~  979 (1513)
                      +|.|++|+. ++...+.+.+.+.+|....+...
T Consensus       201 ~pEflnRid~ii~f~~l~~~~~~~I~~~~l~~~  233 (315)
T d1r6bx3         201 TPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVEL  233 (315)
T ss_dssp             CHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHhhhhhhhcccchhhhHHHHHHHHHHHHH
Confidence            999999997 57778889999999988766543

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.24  E-value=0.00037  Score=74.47  Aligned_cols=119  Identities=14%  Similarity=0.121  Sum_probs=69.6

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhcc
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVS 1432 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~~ 1432 (1513)
                      .++|.||+|+||||+++.+++.+......         ..+...|.....     |.      ........... .....
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~~~~~~---------~~~~e~~~~~~~-----~~------~~~~~~~~~~~-~~~~~   95 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIYGKNYS---------NMVLELNASDDR-----GI------DVVRNQIKDFA-STRQI   95 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHHTTSHH---------HHEEEECTTSCC-----SH------HHHHTHHHHHH-HBCCS
T ss_pred             eEEEECCCCCChhHHHHHHHHHhhcCCCc---------ceeEEecccccC-----Ce------eeeecchhhcc-ccccc
Confidence            48999999999999999999876531110         111222222111     10      01111111111 11112


Q ss_pred             CCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeC
Q psy4730        1433 TTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1433 ~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
                      .....+-||+|.  .+.......|-..|++             .++++.+++=+.+.....|+..|||-.+.|.+
T Consensus        96 ~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~-------------~~~~~~~~~~~~~~~~i~~~i~sr~~~i~~~~  157 (227)
T d1sxjc2          96 FSKGFKLIILDEADAMTNAAQNALRRVIER-------------YTKNTRFCVLANYAHKLTPALLSQCTRFRFQP  157 (227)
T ss_dssp             SSCSCEEEEETTGGGSCHHHHHHHHHHHHH-------------TTTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred             cCCCeEEEEEeccccchhhHHHHHHHHhhh-------------cccceeeccccCcHHHhHHHHHHHHhhhcccc
Confidence            234557899994  3344444555555543             24577888888889999999999999998865

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.20  E-value=0.00089  Score=75.21  Aligned_cols=133  Identities=23%  Similarity=0.284  Sum_probs=86.8

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCCCCCCccCHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSASHEWRDGILAKTFRE 1428 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~t~eW~DG~l~~~lR~ 1428 (1513)
                      .++++||||+|||.+.+.||+.+-.-           .....++|-...+    ...|+|.-.--.+.=..|.|+..+++
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~~~-----------~~~~~~~~~~~~~~~~~~~~L~g~~~gyvG~~~~~~l~~~~~~  123 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLFDT-----------EEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR  123 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHHSS-----------GGGEEEECTTTCCSSGGGGGC--------------CHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHhcCC-----------CcceEEEeccccccchhhhhhcCCCCCCcCcccCChHHHHHHh
Confidence            35777999999999999999998310           1345666665555    56777742100111123788888886


Q ss_pred             hhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCC-------------------
Q psy4730        1429 MAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL------------------- 1487 (1513)
Q Consensus      1429 ~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l------------------- 1487 (1513)
                      .      ...-|+||  .=+++...+.|-.+||+. .++-.+|..+.+. + .+++-|+|+                   
T Consensus       124 ~------p~~Vvl~DEieK~~~~v~~~ll~~l~~g-~~~~~~gr~v~~~-~-~i~i~tsnlG~~~i~~~~~~~~~~~~~~  194 (315)
T d1qvra3         124 R------PYSVILFDEIEKAHPDVFNILLQILDDG-RLTDSHGRTVDFR-N-TVIILTSNLGSPLILEGLQKGWPYERIR  194 (315)
T ss_dssp             C------SSEEEEESSGGGSCHHHHHHHHHHHTTT-EECCSSSCCEECT-T-EEEEEECCTTHHHHHHHHHTTCCHHHHH
T ss_pred             C------CCcEEEEehHhhcCHHHHHHHHHHhccC-ceeCCCCcEecCc-c-eEEEEecccChHHHhhhcccccchhhhh
Confidence            4      24679999  456889999999999875 6777888888865 3 344447776                   


Q ss_pred             --------CCCCcchhhccEEE-EeeC
Q psy4730        1488 --------EFASPATVSRVGMI-YFEL 1505 (1513)
Q Consensus      1488 --------~~asPatvsRcg~v-~~~~ 1505 (1513)
                              +...|..++|+..| .|.|
T Consensus       195 ~~~~~~l~~~f~pEflnRid~Ii~F~~  221 (315)
T d1qvra3         195 DEVFKVLQQHFRPEFLNRLDEIVVFRP  221 (315)
T ss_dssp             HHHHHHHHTTSCHHHHHTCSBCCBCCC
T ss_pred             HHHHHHHHhhcCHHHHhcCCeeeeccc
Confidence                    45888888998754 3443

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.0014  Score=70.65  Aligned_cols=45  Identities=7%  Similarity=0.192  Sum_probs=37.0

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      +..|+.+++.+ ..+.+.+.+|+..+.+++|+.+++..+...+...
T Consensus       145 ~~~~il~tn~~-~~i~~~i~SRc~~i~~~~~~~~~i~~~l~~i~~~  189 (239)
T d1njfa_         145 HVKFLLATTDP-QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE  189 (239)
T ss_dssp             TEEEEEEESCG-GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCc-cccChhHhhhhcccccccCcHHHhhhHHHHHHhh
Confidence            45677777754 4578889999999999999999999988887654

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.12  E-value=0.00078  Score=72.38  Aligned_cols=121  Identities=17%  Similarity=0.250  Sum_probs=72.4

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
                      ++++++|||||||||+.++|++.++.              ....+|.....               .-|-+..++...  
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~--------------~~~~~~~~~~~---------------~~~~~~~~~~~~--   84 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQT--------------NIHVTSGPVLV---------------KQGDMAAILTSL--   84 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTC--------------CEEEEETTTCC---------------SHHHHHHHHHHC--
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCC--------------CcccccCcccc---------------cHHHHHHHHHhh--
Confidence            57999999999999999999988752              33334422111               112233343332  


Q ss_pred             cCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeec----CCCeeec-CCCCeEEEeecCCCCCCcchhhccEEE-Ee
Q psy4730        1432 STTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLI----NGEIIKM-SNTMNLIFECENLEFASPATVSRVGMI-YF 1503 (1513)
Q Consensus      1432 ~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~----nGe~i~~-~~~~~~iFE~~~l~~asPatvsRcg~v-~~ 1503 (1513)
                         ....-+++|  -.++...-+.+..++++.....+.    +...+.. .+++.+++-+.+.....|+..+||..+ ++
T Consensus        85 ---~~~~~~~ide~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~at~~~~~~~~~~~~r~~~~~~~  161 (238)
T d1in4a2          85 ---ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILEL  161 (238)
T ss_dssp             ---CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEEC
T ss_pred             ---ccCCchHHHHHHHhhhHHHhhcccceeeeeeeeeecCcccccccccCCCCeEEEEecCCCccccccceeeeeEEEEe
Confidence               223455667  344566666677677665443332    2223332 457889999999999999999999864 56


Q ss_pred             eCC
Q psy4730        1504 ELK 1506 (1513)
Q Consensus      1504 ~~~ 1506 (1513)
                      ++.
T Consensus       162 ~~~  164 (238)
T d1in4a2         162 DFY  164 (238)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            543

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00022  Score=80.53  Aligned_cols=113  Identities=16%  Similarity=0.160  Sum_probs=76.6

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCCCCCCccCHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSASHEWRDGILAKTFRE 1428 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~t~eW~DG~l~~~lR~ 1428 (1513)
                      .++++||||+|||.+.+.||+++.              ....+++....+    ..+|.|.-..-.+.=..|.++..+++
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l~--------------~~~i~~d~s~~~~~~~~~~l~g~~~gy~g~~~~~~l~~~~~~  119 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKALG--------------IELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK  119 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT--------------CEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHhhcc--------------CCeeEeccccccchhhhhhhcccCCCccccccCChhhHHHHh
Confidence            588999999999999999999975              245666655544    46677752110001123667777765


Q ss_pred             hhccCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCC
Q psy4730        1429 MAVSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE 1488 (1513)
Q Consensus      1429 ~~~~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~ 1488 (1513)
                      .      ...-++||.  -+++++...|-.+||+. .++-.+|..+.+.+  .+++-|.|+.
T Consensus       120 ~------~~~vvl~DeieKa~~~V~~~lLqild~G-~ltd~~Gr~vdf~n--~iiI~Tsnig  172 (315)
T d1r6bx3         120 H------PHAVLLLDEIEKAHPDVFNILLQVMDNG-TLTDNNGRKADFRN--VVLVMTTNAG  172 (315)
T ss_dssp             C------SSEEEEEETGGGSCHHHHHHHHHHHHHS-EEEETTTEEEECTT--EEEEEEECSS
T ss_pred             C------ccchhhhcccccccchHhhhhHHhhccc-eecCCCCCccCccc--eEEEeccchh
Confidence            4      236788994  56788888888888654 78888898877653  3444477763

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.03  E-value=9.8e-05  Score=80.37  Aligned_cols=35  Identities=26%  Similarity=0.301  Sum_probs=30.7

Q ss_pred             CCCCCCCCCCCccchHHHHHHhcCEEEEEEcCCCC
Q psy4730         663 GAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRP  697 (1513)
Q Consensus       663 ~~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~~  697 (1513)
                      ..+.||+|||||.+++.+|+.+|.+++.++|++.+
T Consensus        43 vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~   77 (246)
T d1d2na_          43 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM   77 (246)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGC
T ss_pred             EEEECcCCCCHHHHHHHHhhccccccccccccccc
Confidence            45689999999999999999999999999987543

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.88  E-value=0.00052  Score=73.58  Aligned_cols=130  Identities=14%  Similarity=0.101  Sum_probs=71.0

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhcccccc-C--CCCCCccCHHHHHHHHh
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFD-S--ASHEWRDGILAKTFREM 1429 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~-~--~t~eW~DG~l~~~lR~~ 1429 (1513)
                      .++|.|||||||||+++.+++.+......        ......+|.......+..+.-. .  .......+...     .
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  101 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKELYGPDLM--------KSRILELNASDERGISIVREKVKNFARLTVSKPSKHD-----L  101 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHHHHHH--------TTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTH-----H
T ss_pred             eEEEECCCCCChHHHHHHHHHHHcCCccc--------ccchhheeccccccchHHHHHHHHHhhhhhhhhhHHH-----H
Confidence            48999999999999999999877542221        1233445544333111111100 0  00001111100     0


Q ss_pred             hccCCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeCC
Q psy4730        1430 AVSTTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus      1430 ~~~~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
                      ........+.+|+|. +|...-+..|.++-   .+       -.-+.+..+++-+.+....-|+..|||..|.|++-
T Consensus       102 ~~~~~~~~~viiiDe-~d~l~~~~~~~l~~---~~-------~~~~~~~~~i~~~~~~~~~~~~l~sr~~~i~f~~~  167 (237)
T d1sxjd2         102 ENYPCPPYKIIILDE-ADSMTADAQSALRR---TM-------ETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKAL  167 (237)
T ss_dssp             HHSCCCSCEEEEETT-GGGSCHHHHHHHHH---HH-------HHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCC
T ss_pred             hhccccCceEEEEec-ccccCHHHHHHHhh---cc-------ccccccccccccccccccccccccchhhhhccccc
Confidence            112234567899995 22222233333321   00       01224567888888999999999999999988764

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.87  E-value=0.0021  Score=68.63  Aligned_cols=43  Identities=5%  Similarity=0.015  Sum_probs=33.7

Q ss_pred             EEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730         935 IYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       935 ~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      .++.+.+.. ..+.+++.+||..+.+++|+.+++..+...++..
T Consensus       140 ~~i~~~~~~-~~~~~~l~sr~~~i~f~~~~~~~~~~~L~~i~~~  182 (237)
T d1sxjd2         140 RFCLICNYV-TRIIDPLASQCSKFRFKALDASNAIDRLRFISEQ  182 (237)
T ss_dssp             EEEEEESCG-GGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHT
T ss_pred             ccccccccc-ccccccccchhhhhccccccccccchhhhhhhhh
Confidence            344444433 4567889999999999999999999999888754

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.86  E-value=0.0028  Score=67.90  Aligned_cols=121  Identities=19%  Similarity=0.176  Sum_probs=67.4

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
                      ++++|.||||+||||+.+++++.++              ......+-.....               -|.....+++.  
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~~~--------------~~~~~~~~~~~~~---------------~~~~~~~~~~~--   84 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHELG--------------VNLRVTSGPAIEK---------------PGDLAAILANS--   84 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHT--------------CCEEEEETTTCCS---------------HHHHHHHHHTT--
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC--------------CCeEeccCCcccc---------------chhhHHHHHhh--
Confidence            5899999999999999999997764              2334444222211               11122222322  


Q ss_pred             cCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecC-C----CeeecCCCCeEEEeecCCCCCCcchhhc-cEEEEe
Q psy4730        1432 STTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLIN-G----EIIKMSNTMNLIFECENLEFASPATVSR-VGMIYF 1503 (1513)
Q Consensus      1432 ~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~n-G----e~i~~~~~~~~iFE~~~l~~asPatvsR-cg~v~~ 1503 (1513)
                        .....-+++|.  -....--+.+-+++++...-...+ +    ....-++++.+++.+.+.....|++.+| |-.+.+
T Consensus        85 --~~~~~i~~iDe~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~  162 (239)
T d1ixsb2          85 --LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHL  162 (239)
T ss_dssp             --CCTTCEEEEETGGGCCHHHHHHHHHHHHHSEEEEECSCTTCCCEEEEECCCCEEEEEESCCSSCSCGGGGGCSEEEEC
T ss_pred             --ccCCCeeeeecccccchhHHHhhhhhhhhhhhhhhhccchhhhhcccCCCCEEEEeeccCcccccchhhcccceeeEe
Confidence              12234666773  223334455555554432211111 1    1122356778899999999988888777 444444


Q ss_pred             eC
Q psy4730        1504 EL 1505 (1513)
Q Consensus      1504 ~~ 1505 (1513)
                      .+
T Consensus       163 ~~  164 (239)
T d1ixsb2         163 EY  164 (239)
T ss_dssp             CC
T ss_pred             ec
Confidence            43

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.82  E-value=0.0018  Score=70.73  Aligned_cols=56  Identities=7%  Similarity=0.110  Sum_probs=36.7

Q ss_pred             ceEEEEeecCC-----CCCCChhhhccc-eEeecCCCChHHHHHHHHHHhhhhhhc-cchhHH
Q psy4730         933 DIIYITAMIPT-----MNTITGRLLRHM-NIISIDSFNEATLSKIFTSVLDWHFSK-GFADSI  988 (1513)
Q Consensus       933 ~~~~~~a~~~~-----~~~~~~r~~~~f-~~~~~~~~~~~~l~~i~~~~l~~~~~~-~f~~~~  988 (1513)
                      ...+++.++.+     .....+++.+|| ..+.+++|+.+++..|....+...+.. .|+++.
T Consensus       173 ~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~~~~~~~~~~~~~a  235 (287)
T d1w5sa2         173 RIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRH  235 (287)
T ss_dssp             BEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHH
T ss_pred             ceeEEeecccHHHHHHHHhhccchhcccceeeeccCCcHHHHHHHHhhhHHHhhccCCCCHHH
Confidence            34455555543     234556777665 569999999999999999887654332 455543

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.81  E-value=0.0013  Score=68.72  Aligned_cols=120  Identities=13%  Similarity=0.210  Sum_probs=79.2

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
                      .-+.+++.||+|||||++...|++.+.....        .+.++..|+|..-+    .| .|.         +-.+.+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~--------~h~D~~~i~~~~~~----I~-Id~---------IR~i~~~~   71 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVEKFPP--------KASDVLEIDPEGEN----IG-IDD---------IRTIKDFL   71 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHHTSCC--------CTTTEEEECCSSSC----BC-HHH---------HHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHhcccc--------CCCCEEEEeCCcCC----CC-HHH---------HHHHHHHH
Confidence            3469999999999999999999987654221        12356777774211    11 110         11222222


Q ss_pred             hccC-CCCceEEEEcCCCChHHHHhhhccc---CCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeC
Q psy4730        1430 AVST-TPDRKWIMFDGPIDAVWIENMNTVL---DDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus      1430 ~~~~-~~~~~WivfDG~~d~~wiE~LNsvL---Ddn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
                      ...+ .+..+-+|+|+ +|..=.++-|++|   ++             .|+++.|++=|++....-|+-.|||-++++.+
T Consensus        72 ~~~~~~~~~KviIId~-ad~l~~~aqNaLLK~LEE-------------Pp~~t~fiLit~~~~~ll~TI~SRC~~i~~~~  137 (198)
T d2gnoa2          72 NYSPELYTRKYVIVHD-CERMTQQAANAFLKALEE-------------PPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNV  137 (198)
T ss_dssp             TSCCSSSSSEEEEETT-GGGBCHHHHHHTHHHHHS-------------CCTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred             hhCcccCCCEEEEEeC-ccccchhhhhHHHHHHhC-------------CCCCceeeeccCChhhCHHHHhcceEEEeCCC
Confidence            2222 35678899986 3333335555554   33             46789999999999999999999999999864

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.80  E-value=0.00089  Score=75.22  Aligned_cols=83  Identities=17%  Similarity=0.313  Sum_probs=63.6

Q ss_pred             HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC-------------------------
Q psy4730         889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT-------------------------  943 (1513)
Q Consensus       889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~-------------------------  943 (1513)
                      +++||+....++      +...|-++++.|-+-|. ....+...+..+++++|-.                         
T Consensus       129 vl~DEieK~~~~------v~~~ll~~l~~g~~~~~-~gr~v~~~~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l  201 (315)
T d1qvra3         129 ILFDEIEKAHPD------VFNILLQILDDGRLTDS-HGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVL  201 (315)
T ss_dssp             EEESSGGGSCHH------HHHHHHHHHTTTEECCS-SSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             EEEehHhhcCHH------HHHHHHHHhccCceeCC-CCcEecCcceEEEEecccChHHHhhhcccccchhhhhHHHHHHH
Confidence            456888866544      88999999998765543 3445777899999998842                         


Q ss_pred             CCCCChhhhccceEe-ecCCCChHHHHHHHHHHhhh
Q psy4730         944 MNTITGRLLRHMNII-SIDSFNEATLSKIFTSVLDW  978 (1513)
Q Consensus       944 ~~~~~~r~~~~f~~~-~~~~~~~~~l~~i~~~~l~~  978 (1513)
                      ...++|.|++||..+ ...+.+.+++.+|....+..
T Consensus       202 ~~~f~pEflnRid~Ii~F~~L~~~~~~~I~~~~l~~  237 (315)
T d1qvra3         202 QQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSY  237 (315)
T ss_dssp             HTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred             HhhcCHHHHhcCCeeeeccchhhhhhHHHHHHHHHH
Confidence            356999999999964 68888999999998876544

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.002  Score=69.90  Aligned_cols=123  Identities=15%  Similarity=0.201  Sum_probs=70.5

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
                      .+|++|+||||||||++++.+|+.++              ..+..+++..+. +.++|.    +    ..-+.++++.+.
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~~~--------------~~~~~i~~~~l~-~~~~g~----~----~~~l~~~f~~A~  101 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGEAK--------------VPFFTISGSDFV-EMFVGV----G----ASRVRDMFEQAK  101 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHT--------------CCEEEECSCSST-TSCCCC----C----HHHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHHcC--------------CCEEEEEhHHhh-hcchhH----H----HHHHHHHHHHHH
Confidence            46999999999999999999998875              356777776653 223331    1    223455565553


Q ss_pred             ccCCCCceEEEEcC-----CC--------ChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchh--
Q psy4730        1431 VSTTPDRKWIMFDG-----PI--------DAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATV-- 1495 (1513)
Q Consensus      1431 ~~~~~~~~WivfDG-----~~--------d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatv-- 1495 (1513)
                      .   ..+.-+++|.     +-        ++..-..+|.+|..     +   +.+.-.+++-+|..|.+....-||..  
T Consensus       102 ~---~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~-----~---d~~~~~~~v~vIatTn~~~~ld~al~R~  170 (256)
T d1lv7a_         102 K---AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVE-----M---DGFEGNEGIIVIAATNRPDVLDPALLRP  170 (256)
T ss_dssp             T---TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHH-----H---HTCCSSSCEEEEEEESCTTTSCGGGGST
T ss_pred             H---cCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHH-----h---hCCCCCCCEEEEEeCCCcccCCHhHcCC
Confidence            2   2334555663     00        01111122333210     0   01112345667777788888888887  


Q ss_pred             hcc-EEEEeeCCC
Q psy4730        1496 SRV-GMIYFELKC 1507 (1513)
Q Consensus      1496 sRc-g~v~~~~~~ 1507 (1513)
                      +|. -.|++++-+
T Consensus       171 gRfd~~i~i~~P~  183 (256)
T d1lv7a_         171 GRFDRQVVVGLPD  183 (256)
T ss_dssp             TSSCEEEECCCCC
T ss_pred             CCCCEEEECCCcC
Confidence            355 577776644

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.0057  Score=64.09  Aligned_cols=41  Identities=7%  Similarity=0.028  Sum_probs=33.5

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHH
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTS  974 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~  974 (1513)
                      ++.||.+++.+. .|.|.+++|+..+.+++|+.+++..+...
T Consensus       138 ~~~fIl~t~~~~-~ll~tI~SRc~~i~~~~~~~~~~~~~L~~  178 (207)
T d1a5ta2         138 ETWFFLATREPE-RLLATLRSRCRLHYLAPPPEQYAVTWLSR  178 (207)
T ss_dssp             TEEEEEEESCGG-GSCHHHHTTSEEEECCCCCHHHHHHHHHH
T ss_pred             cceeeeeecChh-hhhhhhcceeEEEecCCCCHHHHHHHHHH
Confidence            566777777653 48889999999999999999998877654

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.61  E-value=0.00094  Score=72.32  Aligned_cols=122  Identities=16%  Similarity=0.235  Sum_probs=68.5

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
                      .+||+|+||||||||++.+.++..++              ..+..+++     .+|.+.|-..+    ..-+.++++.+.
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~~--------------~~~~~i~~-----~~l~~~~~g~~----~~~l~~~f~~a~   98 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEAR--------------VPFITASG-----SDFVEMFVGVG----AARVRDLFETAK   98 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHTT--------------CCEEEEEH-----HHHHHSCTTHH----HHHHHHHHHHHT
T ss_pred             CceEEEecCCCCChhHHHHHHHHHcC--------------CCEEEEEh-----HHhhhccccHH----HHHHHHHHHHHH
Confidence            35899999999999999999997664              34555554     34544332111    122344444442


Q ss_pred             ccCCCCceEEEEcCCCC--------------hHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchh-
Q psy4730        1431 VSTTPDRKWIMFDGPID--------------AVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATV- 1495 (1513)
Q Consensus      1431 ~~~~~~~~WivfDG~~d--------------~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatv- 1495 (1513)
                         ...+.-|++|. +|              +.--..+|.+|      ...+|  +.-.+++-+|.-|.+....-||.. 
T Consensus        99 ---~~~p~Ii~iDe-id~l~~~r~~~~~~~~~~~~~~~~~ll------~~~d~--~~~~~~vivi~tTn~~~~ld~al~R  166 (247)
T d1ixza_          99 ---RHAPCIVFIDE-IDAVGRKRGSGVGGGNDEREQTLNQLL------VEMDG--FEKDTAIVVMAATNRPDILDPALLR  166 (247)
T ss_dssp             ---TSSSEEEEEET-HHHHHC---------CHHHHHHHHHHH------HHHHT--CCTTCCEEEEEEESCGGGSCGGGGS
T ss_pred             ---HcCCEEEEEEC-hhhhCccCCCCCCCCcHHHHHHHHHHH------HHhhC--CCCCCCEEEEEeCCCccccCHhHcC
Confidence               23346777884 11              11111122221      11111  122345556667888888889887 


Q ss_pred             -hccE-EEEeeCCC
Q psy4730        1496 -SRVG-MIYFELKC 1507 (1513)
Q Consensus      1496 -sRcg-~v~~~~~~ 1507 (1513)
                       +|.. .|++++-+
T Consensus       167 ~~Rf~~~i~~~~P~  180 (247)
T d1ixza_         167 PGRFDRQIAIDAPD  180 (247)
T ss_dssp             TTSSCEEEECCSCC
T ss_pred             CCCCcEEEEECCcC
Confidence             5775 77777643

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.61  E-value=0.0014  Score=70.95  Aligned_cols=37  Identities=27%  Similarity=0.211  Sum_probs=29.7

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT 1402 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t 1402 (1513)
                      ++++|+|||||||||+++++|+.++              ..+..+|+....
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~--------------~~~~~~~~~~~~   89 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELG--------------YDILEQNASDVR   89 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTT--------------CEEEEECTTSCC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH--------------hhhhccccccch
Confidence            5799999999999999999998765              355667765543

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.55  E-value=0.003  Score=68.24  Aligned_cols=126  Identities=16%  Similarity=0.183  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccC
Q psy4730        1337 YIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDS 1412 (1513)
Q Consensus      1337 ~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~ 1412 (1513)
                      +..-..++..+...+.+|+|.||+|||||.+.+.+......           .......+++..++    .++|||.-..
T Consensus         9 ~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~~s~~-----------~~~~~~~~~~~~~~~~~~~~~lfg~~~~   77 (247)
T d1ny5a2           9 MKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDR-----------SKEPFVALNVASIPRDIFEAELFGYEKG   77 (247)
T ss_dssp             HHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTT-----------TTSCEEEEETTTSCHHHHHHHHHCBCTT
T ss_pred             HHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC-----------cccccccchhhhhhhcccHHHhcCcccC
Confidence            33444556667778899999999999999988888753221           12456778888888    4567885321


Q ss_pred             C---CCCCccCHHHHHHHHhhccCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeec
Q psy4730        1413 A---SHEWRDGILAKTFREMAVSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE 1485 (1513)
Q Consensus      1413 ~---t~eW~DG~l~~~lR~~~~~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~ 1485 (1513)
                      .   ......|+|.++          ..-.++||+  .+++.--+.|-.+|++....-+.+...+  +.++|+||-+.
T Consensus        78 ~~~~~~~~~~g~l~~a----------~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~~~~~~~--~~~~RlI~~s~  143 (247)
T d1ny5a2          78 AFTGAVSSKEGFFELA----------DGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEI--EVNVRILAATN  143 (247)
T ss_dssp             SSTTCCSCBCCHHHHT----------TTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBE--ECCCEEEEEES
T ss_pred             CcCCcccccCCHHHcc----------CCCEEEEeChHhCCHHHHHHHHHHHHhCCEEECCCCCce--ecCeEEEEecC
Confidence            1   123556776442          125788885  5677777777777766544444322223  44689999763

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.48  E-value=0.011  Score=63.72  Aligned_cols=56  Identities=11%  Similarity=0.208  Sum_probs=39.3

Q ss_pred             ceEEEEeecCC--CCCCChhhhccc--eEeecCCCChHHHHHHHHHHhhhhhhc-cchhHH
Q psy4730         933 DIIYITAMIPT--MNTITGRLLRHM--NIISIDSFNEATLSKIFTSVLDWHFSK-GFADSI  988 (1513)
Q Consensus       933 ~~~~~~a~~~~--~~~~~~r~~~~f--~~~~~~~~~~~~l~~i~~~~l~~~~~~-~f~~~~  988 (1513)
                      .+.++++.++.  ...+.+++.+++  ..+.+++|+.+.+..|+...+...... .+.++.
T Consensus       158 ~~~~i~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~~~~~~~~~~~~~~  218 (276)
T d1fnna2         158 RIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDI  218 (276)
T ss_dssp             CEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHH
T ss_pred             ceEEeecCCchhhhhhcchhhhhhhcchhccccchhHHHHHHHHHHHHHHhcccccccHHH
Confidence            34566777765  456888888876  458899999999999998876543322 355543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.42  E-value=0.0039  Score=67.58  Aligned_cols=26  Identities=23%  Similarity=0.272  Sum_probs=23.6

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .+++|+||||+|||++++.+++.+..
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~~   69 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYKD   69 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHhc
Confidence            58999999999999999999988853

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.39  E-value=0.00097  Score=69.15  Aligned_cols=24  Identities=17%  Similarity=0.266  Sum_probs=21.5

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      =|+|+|||||||||..+.|++.++
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~g   31 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHFE   31 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHBC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHC
Confidence            578899999999999999998764

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.00069  Score=67.54  Aligned_cols=25  Identities=32%  Similarity=0.442  Sum_probs=23.1

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..|+|+|||||||||+.+.||+.++
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4799999999999999999999875

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.09  E-value=0.0029  Score=68.85  Aligned_cols=122  Identities=19%  Similarity=0.212  Sum_probs=67.2

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
                      .+||+|+||||||||++++.++..++              ..++.+++..+     ...+-..    ...-+.++++.+.
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~~--------------~~~~~i~~~~l-----~~~~~g~----~~~~l~~~f~~A~   94 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANETG--------------AFFFLINGPEI-----MSKLAGE----SESNLRKAFEEAE   94 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHTT--------------CEEEEECHHHH-----TTSCTTH----HHHHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHHhC--------------CeEEEEEchhh-----ccccccc----HHHHHHHHHHHHH
Confidence            46999999999999999999988764              34555554433     2221100    0112233333332


Q ss_pred             ccCCCCceEEEEcCCCCh----------H-HHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhh--c
Q psy4730        1431 VSTTPDRKWIMFDGPIDA----------V-WIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVS--R 1497 (1513)
Q Consensus      1431 ~~~~~~~~WivfDG~~d~----------~-wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvs--R 1497 (1513)
                      .   ..+.-|++|. +|.          + .-..++.++      ..  -+...-++++-+|..|.+....-||...  |
T Consensus        95 ~---~~p~il~iDe-id~l~~~r~~~~~~~~~~~~~~~~------~~--~~~~~~~~~vlvi~tTn~~~~ld~al~r~gR  162 (258)
T d1e32a2          95 K---NAPAIIFIDE-LDAIAPKREKTHGEVERRIVSQLL------TL--MDGLKQRAHVIVMAATNRPNSIDPALRRFGR  162 (258)
T ss_dssp             H---TCSEEEEESS-GGGTCCHHHHCCCTTHHHHHHHHH------HH--HHTCCCSSCEEEEEEESCGGGSCGGGTSTTS
T ss_pred             h---cCCeEEEehh-hhhhccCCCCCCCchHHHHHHHhc------cc--cccccccCCccEEEeCCCccccchhhhhccc
Confidence            2   2446777883 111          1 111111111      11  1223445567778888888889999875  5


Q ss_pred             c-EEEEeeCCC
Q psy4730        1498 V-GMIYFELKC 1507 (1513)
Q Consensus      1498 c-g~v~~~~~~ 1507 (1513)
                      . -.|+++.-+
T Consensus       163 fd~~i~~~~P~  173 (258)
T d1e32a2         163 FDREVDIGIPD  173 (258)
T ss_dssp             SCEEEECCCCC
T ss_pred             ccceeECCCCC
Confidence            6 456666543

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.00  E-value=0.0013  Score=71.80  Aligned_cols=25  Identities=16%  Similarity=0.283  Sum_probs=22.9

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .||+|+|||||||||+.+.||..++
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhh
Confidence            5899999999999999999998764

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.00  E-value=0.0015  Score=72.81  Aligned_cols=41  Identities=15%  Similarity=0.098  Sum_probs=27.5

Q ss_pred             cceEEEEeecCC--CCCCCh---hhhccceEeecCCCChHHHHHHH
Q psy4730         932 VDIIYITAMIPT--MNTITG---RLLRHMNIISIDSFNEATLSKIF  972 (1513)
Q Consensus       932 ~~~~~~~a~~~~--~~~~~~---r~~~~f~~~~~~~~~~~~l~~i~  972 (1513)
                      .++.++||+||.  ...+++   |.-|.+..+++++|+.+.-..|.
T Consensus       225 ~~v~viaatN~~~~~~~i~~~~~r~~Rf~~~v~v~~pd~~~r~~il  270 (321)
T d1w44a_         225 RGCVVIASLNPTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQVL  270 (321)
T ss_dssp             HTCEEEEECCCCCCCHHHHHHHHHHHHHSCSEEEEECSSTTEEEEE
T ss_pred             CCeEEEEeCCCcccccchhhhhhccCcccceeecCCCChHHHHHHH
Confidence            468899999975  233554   33456666999999888644333

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=95.98  E-value=0.0019  Score=66.19  Aligned_cols=23  Identities=17%  Similarity=0.312  Sum_probs=21.7

Q ss_pred             EEEeccCCCCchHHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      |+|+|||||||||..+.||+.++
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~g   25 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKYG   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            78999999999999999999885

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0022  Score=66.39  Aligned_cols=24  Identities=21%  Similarity=0.300  Sum_probs=21.9

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|+|.|||||||||..+.|++.++
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~g   26 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKYG   26 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            378999999999999999998875

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.92  E-value=0.0022  Score=65.48  Aligned_cols=23  Identities=22%  Similarity=0.430  Sum_probs=21.2

Q ss_pred             EEEeccCCCCchHHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      |+|+|||||||||..+.|++.++
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~~   25 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKYG   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78899999999999999998875

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.80  E-value=0.012  Score=61.86  Aligned_cols=28  Identities=21%  Similarity=0.297  Sum_probs=23.0

Q ss_pred             cCCccceeccCCCccchHhHHHHHhccC
Q psy4730         727 QNDVPMMFVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       727 ~~~~~~ll~G~~g~GKt~~v~~~~~~~~  754 (1513)
                      +...|+++.||+|||||.+.+.+...+.
T Consensus        34 ~~~n~l~l~G~~G~GKTHLl~A~~~~~~   61 (213)
T d1l8qa2          34 SLYNPIFIYGSVGTGKTHLLQAAGNEAK   61 (213)
T ss_dssp             TSCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCcHHHHHHHHHHHhc
Confidence            3346799999999999999998877653

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.76  E-value=0.002  Score=72.18  Aligned_cols=26  Identities=23%  Similarity=0.310  Sum_probs=23.9

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..|++|+||||||||.+.+.||+.++
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHhhccc
Confidence            46999999999999999999998875

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=95.69  E-value=0.0019  Score=64.98  Aligned_cols=25  Identities=28%  Similarity=0.267  Sum_probs=22.1

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      +=|+|.|||||||||+.+.|++.++
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Confidence            3578999999999999999998775

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.65  E-value=0.0044  Score=66.80  Aligned_cols=25  Identities=20%  Similarity=0.343  Sum_probs=22.9

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      +||+|+||||||||++.+.+|+.++
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~~~   65 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEESN   65 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECcCCCCHHHHHHHHhhccc
Confidence            4899999999999999999998765

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.64  E-value=0.0036  Score=61.66  Aligned_cols=23  Identities=17%  Similarity=0.248  Sum_probs=19.3

Q ss_pred             cceEEEeccCCCCchHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      +.-|+|+|+|||||||+.+.|++
T Consensus         2 kklIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           2 KKIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999887754

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.0024  Score=64.23  Aligned_cols=27  Identities=26%  Similarity=0.306  Sum_probs=24.1

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .++-++|+|+|||||||+.+.|++.++
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            457889999999999999999998875

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.49  E-value=0.0027  Score=64.28  Aligned_cols=27  Identities=30%  Similarity=0.276  Sum_probs=24.2

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      ..+|+|+|+|||||||+.+.||+.++.
T Consensus         2 ~~~Iil~G~~GsGKSTia~~LA~~Lg~   28 (170)
T d1e6ca_           2 TEPIFMVGARGCGMTTVGRELARALGY   28 (170)
T ss_dssp             CCCEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence            367999999999999999999998863

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=95.46  E-value=0.0022  Score=64.32  Aligned_cols=26  Identities=27%  Similarity=0.369  Sum_probs=23.0

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      +.-|+|.|||||||||+.+.|++.++
T Consensus         2 ~klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           2 KKLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            35699999999999999999998765

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.39  E-value=0.0021  Score=65.28  Aligned_cols=25  Identities=20%  Similarity=0.355  Sum_probs=22.8

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|+|.|||||||||+++.|++.++
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4699999999999999999998875

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.0095  Score=62.43  Aligned_cols=26  Identities=31%  Similarity=0.542  Sum_probs=21.9

Q ss_pred             ceEEEe--ccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVV--GESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilv--G~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      +|.+|+  |+.||||||.++.|++.+..
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~   29 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCA   29 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            455555  99999999999999999875

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.20  E-value=0.0039  Score=63.15  Aligned_cols=24  Identities=29%  Similarity=0.465  Sum_probs=21.9

Q ss_pred             EEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      |+|+||+||||||+++.++..+..
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCC
Confidence            789999999999999999988753

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.18  E-value=0.0035  Score=64.82  Aligned_cols=24  Identities=21%  Similarity=0.300  Sum_probs=21.7

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|+|+|||||||||+.+.|++.++
T Consensus         8 iI~i~G~pGSGKsT~a~~La~~~g   31 (194)
T d1qf9a_           8 VVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            478899999999999999998875

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.16  E-value=0.0082  Score=67.21  Aligned_cols=32  Identities=22%  Similarity=0.376  Sum_probs=27.2

Q ss_pred             HHHHHHhcceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      |..++..+..|++.|+|||||||+.++|...+
T Consensus       159 l~~~v~~~~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         159 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             HHHHHHHTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             HHHHHHhCCCEEEEeeccccchHHHHHHhhhc
Confidence            55567778899999999999999999987554

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.08  E-value=0.0039  Score=63.46  Aligned_cols=23  Identities=22%  Similarity=0.316  Sum_probs=21.5

Q ss_pred             EEEeccCCCCchHHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      |+|.|||||||||+.+.|++.++
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~~   25 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAYG   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            78999999999999999998875

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.08  E-value=0.0042  Score=63.96  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=21.5

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|+|+|||||||||..+.||+.++
T Consensus         5 riil~G~pGSGKsT~a~~La~~~g   28 (190)
T d1ak2a1           5 RAVLLGPPGAGKGTQAPKLAKNFC   28 (190)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            467889999999999999998875

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.05  E-value=0.0048  Score=62.21  Aligned_cols=25  Identities=20%  Similarity=0.298  Sum_probs=22.8

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .|.|+|+|||||||+.+.|++.++.
T Consensus         8 ~I~l~G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           8 TIFLTGYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4889999999999999999999874

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.04  E-value=0.0035  Score=64.05  Aligned_cols=23  Identities=30%  Similarity=0.429  Sum_probs=21.4

Q ss_pred             EEEeccCCCCchHHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      |+|.|||||||||..+.|++.++
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~g   25 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKLG   25 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            78999999999999999998885

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=95.01  E-value=0.0038  Score=62.79  Aligned_cols=26  Identities=23%  Similarity=0.312  Sum_probs=23.3

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ...|+|.|+|||||||+.+.|++.++
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            45789999999999999999998875

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=95.00  E-value=0.0037  Score=62.88  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=21.8

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|+|.|||||||||+.+.|++.++
T Consensus         7 ~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           7 NILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHST
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHhC
Confidence            399999999999999999998765

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.88  E-value=0.016  Score=62.78  Aligned_cols=136  Identities=13%  Similarity=0.140  Sum_probs=73.6

Q ss_pred             HHHHHHHHH--hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChh-hccccccCCCCCC
Q psy4730        1341 IIQVYEMIL--VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMG-QLYGEFDSASHEW 1417 (1513)
Q Consensus      1341 ~~qL~~~~~--~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~-eL~G~~~~~t~eW 1417 (1513)
                      +-+|.+++.  .++.++||||||+|||++++.||.-+..-    ..+..-....++.+++.++-.. .+.       ++|
T Consensus        27 i~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~----~vp~~l~~~~i~~l~~~~liag~~~~-------g~~   95 (268)
T d1r6bx2          27 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQG----DVPEVMADCTIYSLDIGSLLAGTKYR-------GDF   95 (268)
T ss_dssp             HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHT----CSCGGGTTCEEEECCCC---CCCCCS-------SCH
T ss_pred             HHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHHHhC----CcccccccceeEEeeechHhccCccc-------hhH
Confidence            344444443  34689999999999999999999876541    1111122356788887776421 222       234


Q ss_pred             ccCHHHHHHHHhhccCCCCceEEEEcCCCChHHHHhhhcccCCCC----ce--------eecCCCeeecCCCCeEEEeec
Q psy4730        1418 RDGILAKTFREMAVSTTPDRKWIMFDGPIDAVWIENMNTVLDDNK----KL--------CLINGEIIKMSNTMNLIFECE 1485 (1513)
Q Consensus      1418 ~DG~l~~~lR~~~~~~~~~~~WivfDG~~d~~wiE~LNsvLDdn~----~L--------~L~nGe~i~~~~~~~~iFE~~ 1485 (1513)
                      ..- +..++.+...   ....-+++|.         +.+++.-..    .+        .|..       ..+++|-+|+
T Consensus        96 e~r-~~~i~~~~~~---~~~iIlfiDe---------ih~l~~~g~~~g~~~d~a~~Lkp~L~r-------g~i~vIgatT  155 (268)
T d1r6bx2          96 EKR-FKALLKQLEQ---DTNSILFIDE---------IHTIIGAGAASGGQVDAANLIKPLLSS-------GKIRVIGSTT  155 (268)
T ss_dssp             HHH-HHHHHHHHSS---SSCEEEEETT---------TTTTTTSCCSSSCHHHHHHHHSSCSSS-------CCCEEEEEEC
T ss_pred             HHH-HHHHHHHhhc---cCCceEEecc---------hHHHhcCCCCCCccccHHHHhhHHHhC-------CCCeEEEeCC
Confidence            322 2344444421   1223333452         122221100    00        2223       3578888885


Q ss_pred             CC-----CCCCcchhhccEEEEeeCCC
Q psy4730        1486 NL-----EFASPATVSRVGMIYFELKC 1507 (1513)
Q Consensus      1486 ~l-----~~asPatvsRcg~v~~~~~~ 1507 (1513)
                      .=     -.--||...|...|.+++.+
T Consensus       156 ~eey~~~~e~d~al~rrF~~I~V~Eps  182 (268)
T d1r6bx2         156 YQEFSNIFEKDRALARRFQKIDITEPS  182 (268)
T ss_dssp             HHHHHCCCCCTTSSGGGEEEEECCCCC
T ss_pred             HHHHHHHHhhcHHHHhhhcccccCCCC
Confidence            43     34568999999999988754

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.85  E-value=0.0049  Score=63.40  Aligned_cols=24  Identities=21%  Similarity=0.357  Sum_probs=22.0

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|+|.|||||||||..+.|++.++
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~~   28 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKYQ   28 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            488999999999999999998875

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.0061  Score=61.55  Aligned_cols=26  Identities=23%  Similarity=0.294  Sum_probs=23.5

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      +.|+|+|||||||||+++.+++.+..
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~   27 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKS   27 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHH
Confidence            45999999999999999999988865

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.80  E-value=0.0057  Score=61.46  Aligned_cols=24  Identities=33%  Similarity=0.325  Sum_probs=21.9

Q ss_pred             EEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      |+|+|+|||||||+-+.||+.++.
T Consensus         4 IvliG~~G~GKSTig~~La~~l~~   27 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALGV   27 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            788899999999999999998863

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.65  E-value=0.006  Score=71.30  Aligned_cols=44  Identities=18%  Similarity=0.238  Sum_probs=34.0

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccc
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYG 1408 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G 1408 (1513)
                      ...|+|+||||||||-+.+.||+.++              +.+...+.-.+|-.-+.|
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~--------------VPFv~~daT~fTeaGYvG   92 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLAN--------------APFIKVEATKFTEVGYVG   92 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT--------------CCEEEEEGGGGC----CC
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhC--------------CCEEEeecceeeecceee
Confidence            45899999999999999999998774              667788877777655555

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.63  E-value=0.0076  Score=61.02  Aligned_cols=27  Identities=30%  Similarity=0.265  Sum_probs=23.8

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      +.-|+|.|++||||||+++.|++.++.
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~   27 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRK   27 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            356899999999999999999988864

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=94.62  E-value=0.0066  Score=60.77  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=22.7

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .|+|+|+|||||||+-+.||+.++.
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~   26 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDL   26 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4889999999999999999999863

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.49  E-value=0.0069  Score=61.75  Aligned_cols=24  Identities=21%  Similarity=0.379  Sum_probs=21.5

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|+|.|||||||||..+.|++.++
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~g   27 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERFH   27 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            378889999999999999998875

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.48  E-value=0.0057  Score=63.22  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=22.5

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..|+|+|||||||||..+.|++.++
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~~~g   33 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVKDYS   33 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4688999999999999999998775

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.43  E-value=0.011  Score=67.14  Aligned_cols=27  Identities=22%  Similarity=0.137  Sum_probs=24.6

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .+++++++||||||||++.+.|++.++
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            456999999999999999999998886

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=94.39  E-value=0.009  Score=59.61  Aligned_cols=25  Identities=32%  Similarity=0.178  Sum_probs=22.6

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      -+.++|++||||||+++.|++.+..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~   28 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCA   28 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999988764

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.37  E-value=0.016  Score=59.52  Aligned_cols=140  Identities=13%  Similarity=0.193  Sum_probs=73.7

Q ss_pred             HHHHHHH--hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC-hhhccccccCCCCCCcc
Q psy4730        1343 QVYEMIL--VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-MGQLYGEFDSASHEWRD 1419 (1513)
Q Consensus      1343 qL~~~~~--~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t-~~eL~G~~~~~t~eW~D 1419 (1513)
                      ++.+.+.  .+..++||||||+|||++++.||.-+..  +.  .+..-....++.+++.++- -..+-|       +|..
T Consensus        33 ~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~--~~--vp~~L~~~~i~~ld~~~LiAg~~~rG-------~~E~  101 (195)
T d1jbka_          33 RTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN--GE--VPEGLKGRRVLALDMGALVAGAKYRG-------EFEE  101 (195)
T ss_dssp             HHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH--TC--SCGGGTTCEEEEECHHHHHTTTCSHH-------HHHH
T ss_pred             HHHHHHhccCCCCeEEEecCCcccHHHHHHHHHHHHh--CC--CCHHHcCceEEEeeHHHHhccCCccH-------HHHH
Confidence            3344443  3458999999999999999999987653  11  1111123456767665542 111222       3332


Q ss_pred             CHHHHHHHHhhccCCCCceEEEEcCCCChHHHHhhhcccCCCCc---eeecCCCeee---cCCCCeEEEeecCC-----C
Q psy4730        1420 GILAKTFREMAVSTTPDRKWIMFDGPIDAVWIENMNTVLDDNKK---LCLINGEIIK---MSNTMNLIFECENL-----E 1488 (1513)
Q Consensus      1420 G~l~~~lR~~~~~~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~---L~L~nGe~i~---~~~~~~~iFE~~~l-----~ 1488 (1513)
                       -+..++.+....  ...-.+++|         .+.++++-...   +.+  ++.++   -...+++|.+|+.-     -
T Consensus       102 -rl~~il~e~~~~--~~~iILfID---------eih~l~~~g~~~g~~d~--~~~Lkp~L~rg~l~~IgatT~eey~~~~  167 (195)
T d1jbka_         102 -RLKGVLNDLAKQ--EGNVILFID---------ELHTMVGAGKADGAMDA--GNMLKPALARGELHCVGATTLDEYRQYI  167 (195)
T ss_dssp             -HHHHHHHHHHHS--TTTEEEEEE---------TGGGGTT------CCCC--HHHHHHHHHTTSCCEEEEECHHHHHHHT
T ss_pred             -HHHHHHHHHhcC--CCcEEEEcc---------hHHHHhcCCCCCCcccH--HHHHHHHHhCCCceEEecCCHHHHHHHH
Confidence             234455544221  112344444         33444432211   000  01111   13568889888643     3


Q ss_pred             CCCcchhhccEEEEeeCCC
Q psy4730        1489 FASPATVSRVGMIYFELKC 1507 (1513)
Q Consensus      1489 ~asPatvsRcg~v~~~~~~ 1507 (1513)
                      .--||...|...|.+++.+
T Consensus       168 e~d~aL~rrF~~I~V~Ep~  186 (195)
T d1jbka_         168 EKDAALERRFQKVFVAEPS  186 (195)
T ss_dssp             TTCHHHHTTEEEEECCCCC
T ss_pred             HcCHHHHhcCCEeecCCCC
Confidence            3468999999999887643

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.36  E-value=0.0084  Score=65.28  Aligned_cols=26  Identities=23%  Similarity=0.331  Sum_probs=23.8

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..||+|+||||||||++.+.+|..++
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHhC
Confidence            46999999999999999999998875

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.34  E-value=0.0087  Score=61.74  Aligned_cols=28  Identities=21%  Similarity=0.238  Sum_probs=23.8

Q ss_pred             HhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1349 LVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ....-|+|.|||||||||..+.|++.++
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~g   33 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKYG   33 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3445688999999999999999998765

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.30  E-value=0.0081  Score=61.66  Aligned_cols=24  Identities=25%  Similarity=0.325  Sum_probs=21.5

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ++|+|+|||||||||+.+.|++-.
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhC
Confidence            579999999999999999997654

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.25  E-value=0.0063  Score=67.63  Aligned_cols=26  Identities=27%  Similarity=0.538  Sum_probs=22.5

Q ss_pred             cceEEE-eccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMV-VGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvil-vG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ..|++| +||||||||.+.+.||..++
T Consensus       122 ~~g~~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         122 ASGMVIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             ESEEEEEECSSSSCHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHhc
Confidence            457776 79999999999999998876

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.23  E-value=0.013  Score=66.52  Aligned_cols=89  Identities=19%  Similarity=0.258  Sum_probs=53.1

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
                      ..++++||||||||.+.+.||+.+.              ..+.+++....+-..+.|+.       .+|.++.++.....
T Consensus        69 ~niLfiGPTGvGKTElAk~LA~~~~--------------~~~ir~D~s~~~e~gyvg~d-------v~~~i~~l~~~~~~  127 (364)
T d1um8a_          69 SNILLIGPTGSGKTLMAQTLAKHLD--------------IPIAISDATSLTEAGYVGED-------VENILTRLLQASDW  127 (364)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTT--------------CCEEEEEGGGCC---------------CTHHHHHHHHHTTT
T ss_pred             cceeeeCCCCccHHHHHHHHHhhcc--------------cceeehhhhhcccchhhHhh-------hccchhhhhhhchh
Confidence            3599999999999999999998753              34566777777766566642       34667776654321


Q ss_pred             c-CCCCceEEEEcCC----------------CChHHHHhhhcccCCC
Q psy4730        1432 S-TTPDRKWIMFDGP----------------IDAVWIENMNTVLDDN 1461 (1513)
Q Consensus      1432 ~-~~~~~~WivfDG~----------------~d~~wiE~LNsvLDdn 1461 (1513)
                      . ......-++||-.                ..+.+-+.|=.+||+.
T Consensus       128 ~v~~~~~~iv~lDEieK~~~~s~~~~~~~d~a~~~V~~~lLqild~~  174 (364)
T d1um8a_         128 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGS  174 (364)
T ss_dssp             CHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCC
T ss_pred             HHHHhhcccchhhhhhhhccccccccccccccchHHHHhhhhhhcCc
Confidence            1 0112345666621                4566777787888875

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.20  E-value=0.0087  Score=61.68  Aligned_cols=25  Identities=24%  Similarity=0.313  Sum_probs=22.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ++|+|+|||||||||+.+.|++-..
T Consensus         1 rpIvl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           1 RPVVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCC
Confidence            4799999999999999999987764

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.11  E-value=0.0078  Score=60.44  Aligned_cols=25  Identities=28%  Similarity=0.311  Sum_probs=21.5

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-|+|.|||||||||+.+.|++.+
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3568999999999999999998654

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.06  E-value=0.011  Score=61.38  Aligned_cols=25  Identities=28%  Similarity=0.236  Sum_probs=22.9

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      -|+++|.|||||||+.+.|++.++.
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l~~   28 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYLNF   28 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4899999999999999999998875

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.05  E-value=0.0098  Score=60.63  Aligned_cols=26  Identities=23%  Similarity=0.302  Sum_probs=22.4

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      .+.+|+|+||||+||||+++.|.+-.
T Consensus         2 m~k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           2 MRKTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHhC
Confidence            46799999999999999999887543

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.03  E-value=0.0064  Score=62.34  Aligned_cols=25  Identities=32%  Similarity=0.282  Sum_probs=22.0

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .|+|+|+|||||||+.+.|++.++.
T Consensus        21 vI~L~G~pGSGKTTiAk~La~~l~~   45 (195)
T d1x6va3          21 TVWLTGLSGAGKTTVSMALEEYLVC   45 (195)
T ss_dssp             EEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4558899999999999999998874

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.51  E-value=0.046  Score=59.16  Aligned_cols=114  Identities=14%  Similarity=0.126  Sum_probs=74.3

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccC-CCCCCccCHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDS-ASHEWRDGILAKTFRE 1428 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~-~t~eW~DG~l~~~lR~ 1428 (1513)
                      .+..++++||+++|||+++.++++.++.             +                |.++. .++-|--.        
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~~lg~-------------~----------------~~~~~~~~~f~l~~--------  145 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAHTVPF-------------Y----------------GCVNWTNENFPFND--------  145 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHSSC-------------E----------------EECCTTCSSCTTGG--------
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHHHhcc-------------h----------------hhccccCCCccccc--------
Confidence            3569999999999999999999887753             1                11110 01112111        


Q ss_pred             hhccCCCCceEEEEcCC-CChHHHHhhhcccCCCCceeec--CCCeeecCCCCeEEEeecCCCC----------CCcchh
Q psy4730        1429 MAVSTTPDRKWIMFDGP-IDAVWIENMNTVLDDNKKLCLI--NGEIIKMSNTMNLIFECENLEF----------ASPATV 1495 (1513)
Q Consensus      1429 ~~~~~~~~~~WivfDG~-~d~~wiE~LNsvLDdn~~L~L~--nGe~i~~~~~~~~iFE~~~l~~----------asPatv 1495 (1513)
                           -.....+++|.+ ......|.+-++++.+. ++..  ..+-+.+.+...+|+-..|+..          -+.+.-
T Consensus       146 -----l~~k~~~~~~e~~~~~~~~~~~K~l~gGd~-i~v~~K~k~~~~~~~~p~li~s~n~i~~~~~~~~~~~~~~~~l~  219 (267)
T d1u0ja_         146 -----CVDKMVIWWEEGKMTAKVVESAKAILGGSK-VRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQ  219 (267)
T ss_dssp             -----GSSCSEEEECSCCEETTTHHHHHHHHTTCC-EEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHH
T ss_pred             -----cCCCEEEEEeCCCccccHHHHHHHhcCCCc-eEeecccCCCcEeeCCeEEEEeCCCcccccCCCccccccchHhh
Confidence                 112355666643 34456788888888764 4443  3666788888999999988854          257889


Q ss_pred             hccEEEEeeCC
Q psy4730        1496 SRVGMIYFELK 1506 (1513)
Q Consensus      1496 sRcg~v~~~~~ 1506 (1513)
                      +|.-++.|+..
T Consensus       220 ~R~~~~~F~~~  230 (267)
T d1u0ja_         220 DRMFKFELTRR  230 (267)
T ss_dssp             TTEEEEECCSC
T ss_pred             hhEEEEECCCc
Confidence            99999998764

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=93.51  E-value=0.013  Score=57.64  Aligned_cols=25  Identities=44%  Similarity=0.634  Sum_probs=22.5

Q ss_pred             CccceeccCCCccchHhHHHHHhcc
Q psy4730         729 DVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       729 ~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      .++++|+||+||||||+.+.+...+
T Consensus         2 ~k~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           2 KRNIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4789999999999999999998765

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=93.42  E-value=0.017  Score=58.67  Aligned_cols=25  Identities=24%  Similarity=0.203  Sum_probs=22.2

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      -|+|.|++||||||+.+.|++.++.
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~~   27 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3678999999999999999998874

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=93.32  E-value=0.012  Score=66.89  Aligned_cols=35  Identities=20%  Similarity=0.201  Sum_probs=30.3

Q ss_pred             CCCCCCCCCCCccchHHHHHHhcCEEEEEEcCCCC
Q psy4730         663 GAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRP  697 (1513)
Q Consensus       663 ~~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~~  697 (1513)
                      -.+.||+|||||.+++.+|+.+|.+++.+|+++..
T Consensus       157 ~~~~g~~~~gk~~~~~~~~~~~~~~~i~in~s~~r  191 (362)
T d1svma_         157 WLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR  191 (362)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCEEEEECcchh
Confidence            35589999999999999999999999999988653

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.20  E-value=0.015  Score=58.53  Aligned_cols=27  Identities=26%  Similarity=0.470  Sum_probs=23.5

Q ss_pred             ccceeccCCCccchHhHHHHHhccCcC
Q psy4730         730 VPMMFVGPTGTGKSTIVLNLLLNLSKD  756 (1513)
Q Consensus       730 ~~~ll~G~~g~GKt~~v~~~~~~~~~~  756 (1513)
                      ++|+++||+|||||+++..++..+..+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~   28 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSS   28 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence            689999999999999999998776543

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.12  E-value=0.022  Score=58.07  Aligned_cols=24  Identities=38%  Similarity=0.418  Sum_probs=21.5

Q ss_pred             EEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      |-|.|++||||||+.+.|++.++.
T Consensus        25 IgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_          25 LGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcc
Confidence            448999999999999999988875

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.10  E-value=0.018  Score=58.65  Aligned_cols=25  Identities=24%  Similarity=0.359  Sum_probs=21.3

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|+|+|||||||||+++.|.+-..
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4689999999999999999876543

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.02  E-value=0.014  Score=59.02  Aligned_cols=22  Identities=27%  Similarity=0.151  Sum_probs=19.1

Q ss_pred             ceEEEeccCCCCchHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .-||++|+|||||||+.+.|+.
T Consensus        15 ~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          15 EVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTG
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999887754

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=92.86  E-value=0.02  Score=59.75  Aligned_cols=24  Identities=29%  Similarity=0.473  Sum_probs=20.5

Q ss_pred             eEEEe-ccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVV-GESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilv-G~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      ||+.+ |||||||||..+.|++.++
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            44544 9999999999999999876

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=92.79  E-value=0.018  Score=62.35  Aligned_cols=26  Identities=23%  Similarity=0.160  Sum_probs=22.4

Q ss_pred             EEEeccCCCCchHHHHHHHHHHHhHh
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLTDIA 1379 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~~l~ 1379 (1513)
                      ++++||||+|||++++.+++.+....
T Consensus        49 l~l~GppGtGKT~l~~~l~~~l~~~~   74 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKRVSEAA   74 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHHHHhhc
Confidence            45679999999999999999987644

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.79  E-value=0.054  Score=61.71  Aligned_cols=134  Identities=19%  Similarity=0.235  Sum_probs=66.2

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
                      .++.++||||||+|||++++.||.-+..  +  ..+..-....++.+++.++-.    |.  .-.++|...+ ..++.+.
T Consensus        42 ~k~n~llvG~~GvGKtaiv~~la~~i~~--~--~vp~~l~~~~i~~ld~~~l~a----g~--~~~g~~e~r~-~~i~~~~  110 (387)
T d1qvra2          42 TKNNPVLIGEPGVGKTAIVEGLAQRIVK--G--DVPEGLKGKRIVSLQMGSLLA----GA--KYRGEFEERL-KAVIQEV  110 (387)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHHHHHHH--T--CSCTTSTTCEEEEECC-----------------CHHHHH-HHHHHHH
T ss_pred             CCCCCeEECCCCCCHHHHHHHHHHHHHh--C--CCCHHHcCceEEEeeHhhhhc----cc--CcchhHHHHH-HHHHHHh
Confidence            3457899999999999999999876543  1  111112235678888777642    11  0124566554 4455554


Q ss_pred             hccCCCCceEEEEcCCCChHHHHhhhcccCCCC---ceeecCCCeee---cCCCCeEEEeecCCC----CCCcchhhccE
Q psy4730        1430 AVSTTPDRKWIMFDGPIDAVWIENMNTVLDDNK---KLCLINGEIIK---MSNTMNLIFECENLE----FASPATVSRVG 1499 (1513)
Q Consensus      1430 ~~~~~~~~~WivfDG~~d~~wiE~LNsvLDdn~---~L~L~nGe~i~---~~~~~~~iFE~~~l~----~asPatvsRcg 1499 (1513)
                      ...  ....-+++|.         +.++++-..   .+.+  +..++   -...+++|-+|+.-.    .--||...|..
T Consensus       111 ~~~--~~~~ilfide---------~h~l~~~g~~~g~~d~--a~~Lkp~L~rg~~~~I~~tT~~ey~~~e~d~al~rrF~  177 (387)
T d1qvra2         111 VQS--QGEVILFIDE---------LHTVVGAGKAEGAVDA--GNMLKPALARGELRLIGATTLDEYREIEKDPALERRFQ  177 (387)
T ss_dssp             HTT--CSSEEEEECC---------C---------------------HHHHHTTCCCEEEEECHHHHHHHTTCTTTCSCCC
T ss_pred             ccC--CCceEEEecc---------HHHHhcCCCCCCcccH--HHHHHHHHhCCCcceeeecCHHHHHHhcccHHHHHhcc
Confidence            221  1223455553         333333211   0111  11111   234578888885421    12488889999


Q ss_pred             EEEeeCCC
Q psy4730        1500 MIYFELKC 1507 (1513)
Q Consensus      1500 ~v~~~~~~ 1507 (1513)
                      .|.+++.+
T Consensus       178 ~v~v~ep~  185 (387)
T d1qvra2         178 PVYVDEPT  185 (387)
T ss_dssp             CEEECCCC
T ss_pred             cccCCCCc
Confidence            99888754

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.77  E-value=0.26  Score=55.38  Aligned_cols=29  Identities=28%  Similarity=0.311  Sum_probs=23.0

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHHHhH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSLTDI 1378 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l 1378 (1513)
                      .++-++|.|||||||||++..+..++...
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~~l~~l~~~  190 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAKLLAALIQM  190 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHHHHHHHHT
T ss_pred             cCCeEEEEcCCCCCceehHHHHHHHHHHH
Confidence            46789999999999999987766665543

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=92.60  E-value=0.02  Score=66.81  Aligned_cols=36  Identities=31%  Similarity=0.361  Sum_probs=32.0

Q ss_pred             CCCCCCCCCCCccchHHHHHHhcCEEEEEEcCCCCC
Q psy4730         663 GAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPT  698 (1513)
Q Consensus       663 ~~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~~~  698 (1513)
                      ..+.||+|||||++++.||+.++-|++..+|+.-+.
T Consensus        52 ILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~fTe   87 (443)
T d1g41a_          52 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE   87 (443)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC-
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEEeecceeee
Confidence            355899999999999999999999999999987665

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=92.54  E-value=0.029  Score=58.38  Aligned_cols=26  Identities=31%  Similarity=0.222  Sum_probs=18.3

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      +-|+++||||+||||.+--||..+..
T Consensus        13 ~vi~lvGptGvGKTTTiAKLA~~~~~   38 (211)
T d1j8yf2          13 YVIMLVGVQGTGKATTAGKLAYFYKK   38 (211)
T ss_dssp             EEEEEECSCCC----HHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            56889999999999999999877653

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=92.22  E-value=0.033  Score=57.84  Aligned_cols=26  Identities=31%  Similarity=0.350  Sum_probs=22.3

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      +-|+++||||+||||.+--||..+.+
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA~~~~~   35 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLARQFEQ   35 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            46889999999999999999877654

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=92.10  E-value=0.028  Score=58.85  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=20.4

Q ss_pred             EEEeccCCCCchHHHHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      |.|-|||||||||..+.||+.++
T Consensus         6 IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           6 IAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             EEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            44669999999999999999876

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=92.01  E-value=0.021  Score=57.47  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=21.7

Q ss_pred             ccceeccCCCccchHhHHHHHhcc
Q psy4730         730 VPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       730 ~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      +.++++||+||||||+++.+...+
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            678999999999999999998765

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.96  E-value=0.22  Score=51.10  Aligned_cols=32  Identities=3%  Similarity=-0.064  Sum_probs=25.2

Q ss_pred             ceEEEEeecCCCCCCChhhhccceEeecCCCCh
Q psy4730         933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNE  965 (1513)
Q Consensus       933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~  965 (1513)
                      ++.|+.+++.+. .|.|-+++|...+.++.|+.
T Consensus       109 ~t~fiLit~~~~-~ll~TI~SRC~~i~~~~p~~  140 (198)
T d2gnoa2         109 YAVIVLNTRRWH-YLLPTIKSRVFRVVVNVPKE  140 (198)
T ss_dssp             TEEEEEEESCGG-GSCHHHHTTSEEEECCCCHH
T ss_pred             CceeeeccCChh-hCHHHHhcceEEEeCCCchH
Confidence            566777766653 58899999999999998864

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=91.93  E-value=0.039  Score=57.50  Aligned_cols=25  Identities=40%  Similarity=0.425  Sum_probs=21.6

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      +.|+++||||+||||.+--||..+.
T Consensus        12 ~vi~lvGptGvGKTTTiAKLAa~~~   36 (213)
T d1vmaa2          12 FVIMVVGVNGTGKTTSCGKLAKMFV   36 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999998887764

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=91.87  E-value=0.04  Score=57.14  Aligned_cols=26  Identities=31%  Similarity=0.321  Sum_probs=22.0

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      ..|+++||||+||||.+--||..+.+
T Consensus         7 ~vi~lvGptGvGKTTTiaKLA~~~~~   32 (207)
T d1okkd2           7 RVVLVVGVNGVGKTTTIAKLGRYYQN   32 (207)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999889876653

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.76  E-value=0.03  Score=57.22  Aligned_cols=25  Identities=40%  Similarity=0.779  Sum_probs=22.4

Q ss_pred             ccceeccCCCccchHhHHHHHhccC
Q psy4730         730 VPMMFVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       730 ~~~ll~G~~g~GKt~~v~~~~~~~~  754 (1513)
                      +|++|+||+|+|||++++.++...+
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCC
Confidence            7999999999999999999987653

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=91.72  E-value=0.039  Score=61.43  Aligned_cols=38  Identities=18%  Similarity=0.201  Sum_probs=32.8

Q ss_pred             hHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccC
Q psy4730         717 MQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       717 ~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~  754 (1513)
                      ....++..++..++++|++|+||||||++++.++...+
T Consensus       154 ~~~~~l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         154 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             HHHHHHHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             HHHHHHHHHHHhCCCEEEEeeccccchHHHHHHhhhcc
Confidence            44567888899999999999999999999998887554

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=91.56  E-value=0.046  Score=56.73  Aligned_cols=27  Identities=33%  Similarity=0.256  Sum_probs=22.8

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      ++-++|+||+|+||||.+--||..+.+
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~   36 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYYKG   36 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            456788999999999999999887754

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=91.50  E-value=0.062  Score=52.95  Aligned_cols=39  Identities=15%  Similarity=0.244  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHhcce--EEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1339 EKIIQVYEMILVRHG--LMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1339 ~k~~qL~~~~~~~~g--vilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .++.+.......+.|  |.|.|+=|+||||.+|.++++++.
T Consensus        19 ~~la~~l~~~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhccCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence            333333333334555  778999999999999999999875

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=91.31  E-value=0.04  Score=53.86  Aligned_cols=19  Identities=37%  Similarity=0.511  Sum_probs=17.7

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+|+|++||||||+++.|.
T Consensus         3 ivlvG~~~vGKSsLi~~l~   21 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLK   21 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7899999999999999885

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=91.27  E-value=0.032  Score=55.39  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=20.3

Q ss_pred             cceeccCCCccchHhHHHHHhcc
Q psy4730         731 PMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       731 ~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      .++|+|||||||||+.+.+..++
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57799999999999999988765

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=91.13  E-value=0.041  Score=57.12  Aligned_cols=25  Identities=24%  Similarity=0.204  Sum_probs=21.3

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .-|+|+|||||||||+.+.|.+...
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3488999999999999999987653

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=91.02  E-value=0.038  Score=54.78  Aligned_cols=25  Identities=36%  Similarity=0.529  Sum_probs=21.2

Q ss_pred             ccceeccCCCccchHhHHHHHhccC
Q psy4730         730 VPMMFVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       730 ~~~ll~G~~g~GKt~~v~~~~~~~~  754 (1513)
                      +-++++|||||||||+++.+...+.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3478999999999999999987653

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=90.94  E-value=0.038  Score=53.80  Aligned_cols=24  Identities=25%  Similarity=0.369  Sum_probs=19.9

Q ss_pred             ccceeccCCCccchHhHHHHHhcc
Q psy4730         730 VPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       730 ~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      +-++++|+||||||++++.+++..
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            347789999999999999887643

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.93  E-value=0.042  Score=57.89  Aligned_cols=25  Identities=28%  Similarity=0.216  Sum_probs=21.1

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+-|+||+||||||++++++..+
T Consensus        26 Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          26 GEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCC
Confidence            3468899999999999999987543

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=90.91  E-value=0.037  Score=62.74  Aligned_cols=33  Identities=27%  Similarity=0.411  Sum_probs=30.4

Q ss_pred             CCCCCCCCccchHHHHHHhcCEEEEEEcCCCCC
Q psy4730         666 EGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPT  698 (1513)
Q Consensus       666 ~G~~gtGKte~vk~La~~lG~~~~v~ncs~~~~  698 (1513)
                      .||+|+||||++|.||+.++.+++.++|+.-++
T Consensus        74 iGPTGvGKTElAk~LA~~~~~~~ir~D~s~~~e  106 (364)
T d1um8a_          74 IGPTGSGKTLMAQTLAKHLDIPIAISDATSLTE  106 (364)
T ss_dssp             ECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-
T ss_pred             eCCCCccHHHHHHHHHhhcccceeehhhhhccc
Confidence            799999999999999999999999999987766

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.83  E-value=0.038  Score=58.25  Aligned_cols=24  Identities=21%  Similarity=0.196  Sum_probs=20.5

Q ss_pred             cceEEEeccCCCCchHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      ..-+-|+||+||||||++++++..
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          31 GEFVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCcchhhHhccCC
Confidence            346889999999999999988654

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.75  E-value=0.082  Score=52.44  Aligned_cols=25  Identities=28%  Similarity=0.268  Sum_probs=22.1

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      -+-++|++||||||++..|++.+..
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~~   27 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAVR   27 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            3569999999999999999988875

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=90.63  E-value=0.042  Score=55.09  Aligned_cols=32  Identities=25%  Similarity=0.319  Sum_probs=26.0

Q ss_pred             HHHHHHHHHhcceEEEeccCCCCchHHHHHHH
Q psy4730        1341 IIQVYEMILVRHGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1341 ~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      +++++..-+...=|+|+|++|+||||+++.|.
T Consensus         3 ~~~~~~~~~k~~kI~lvG~~~vGKTsLl~~l~   34 (186)
T d1f6ba_           3 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLK   34 (186)
T ss_dssp             HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHS
T ss_pred             hHHhccccCCCCEEEEECCCCCCHHHHHHHHh
Confidence            45566666666789999999999999998874

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.61  E-value=0.047  Score=57.70  Aligned_cols=23  Identities=17%  Similarity=0.252  Sum_probs=19.7

Q ss_pred             eEEEeccCCCCchHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      -+.|+||+||||||++++++..+
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            45689999999999999998654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.61  E-value=0.064  Score=53.92  Aligned_cols=21  Identities=29%  Similarity=0.333  Sum_probs=18.8

Q ss_pred             eEEEeccCCCCchHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      -|.|+|.+|+||||+++.|..
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999998853

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=90.55  E-value=0.092  Score=52.27  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=19.1

Q ss_pred             eEEEeccCCCCchHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      .|.|+|++|+||||+++.|...
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999998643

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=90.51  E-value=0.042  Score=54.76  Aligned_cols=26  Identities=31%  Similarity=0.335  Sum_probs=22.0

Q ss_pred             CCccceeccCCCccchHhHHHHHhcc
Q psy4730         728 NDVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       728 ~~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      .++.++|+|||||||||+...+...+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            36778999999999999998887654

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=90.48  E-value=0.021  Score=61.69  Aligned_cols=33  Identities=21%  Similarity=0.290  Sum_probs=29.5

Q ss_pred             CCCCCCCCCCccchHHHHHHhcCEEEEEEcCCC
Q psy4730         664 APEGPAGTGKTETSKDLAKAVAKQCIVFNCSDR  696 (1513)
Q Consensus       664 ~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~  696 (1513)
                      .+.||+|||||++++.+|..++.+++.+|+++-
T Consensus        36 lL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~   68 (273)
T d1gvnb_          36 LLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF   68 (273)
T ss_dssp             EEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHhhcceEEEecHHH
Confidence            468999999999999999999999999988643

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=90.37  E-value=0.044  Score=58.30  Aligned_cols=26  Identities=23%  Similarity=0.197  Sum_probs=22.0

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ...-|.|+||+||||||++++|+..+
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            34579999999999999999997554

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=90.31  E-value=0.08  Score=60.79  Aligned_cols=33  Identities=24%  Similarity=0.279  Sum_probs=24.9

Q ss_pred             HHHHHhcc-eEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1345 YEMILVRH-GLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1345 ~~~~~~~~-gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .+++...+ .|++.|||||||||.+..+.+.+++
T Consensus       151 ~~l~~~~~GliLvtGpTGSGKSTTl~~~l~~~~~  184 (401)
T d1p9ra_         151 RRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNS  184 (401)
T ss_dssp             HHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             HHHHhhhhceEEEEcCCCCCccHHHHHHhhhhcC
Confidence            34444455 5778899999999999998777653

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=90.26  E-value=0.051  Score=54.54  Aligned_cols=30  Identities=23%  Similarity=0.287  Sum_probs=24.4

Q ss_pred             CccceeccCCCccchHhHHHHHhccCcCcc
Q psy4730         729 DVPMMFVGPTGTGKSTIVLNLLLNLSKDKY  758 (1513)
Q Consensus       729 ~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~  758 (1513)
                      |+-+++.|++||||||++..+...+.....
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~   30 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGV   30 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            467889999999999999999877654443

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.12  E-value=0.046  Score=58.60  Aligned_cols=26  Identities=23%  Similarity=0.249  Sum_probs=22.0

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ...-+.|+||+||||||++++|+..+
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhccc
Confidence            34679999999999999999997544

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.10  E-value=0.043  Score=54.95  Aligned_cols=24  Identities=29%  Similarity=0.603  Sum_probs=20.5

Q ss_pred             cceeccCCCccchHhHHHHHhccC
Q psy4730         731 PMMFVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       731 ~~ll~G~~g~GKt~~v~~~~~~~~  754 (1513)
                      .++++||+|||||++++.++..++
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~   25 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCC
Confidence            478999999999999998877553

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=90.09  E-value=0.076  Score=55.97  Aligned_cols=24  Identities=29%  Similarity=0.279  Sum_probs=20.9

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|+++|++||||||+++.|.+.+.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Confidence            478999999999999999987653

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.08  E-value=0.049  Score=55.76  Aligned_cols=24  Identities=38%  Similarity=0.749  Sum_probs=21.5

Q ss_pred             ccceeccCCCccchHhHHHHHhcc
Q psy4730         730 VPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       730 ~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      +|+.|+||+|||||++++.++...
T Consensus         1 rpIvl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           1 RPVVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhC
Confidence            689999999999999999887754

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.04  E-value=0.055  Score=56.18  Aligned_cols=24  Identities=21%  Similarity=0.347  Sum_probs=21.1

Q ss_pred             EEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      |-|.|++||||||+.+.|++.++.
T Consensus         5 IgI~G~~gSGKSTla~~L~~~l~~   28 (213)
T d1uj2a_           5 IGVSGGTASGKSSVCAKIVQLLGQ   28 (213)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTTG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhch
Confidence            457899999999999999988764

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=90.01  E-value=0.048  Score=57.76  Aligned_cols=24  Identities=25%  Similarity=0.156  Sum_probs=20.6

Q ss_pred             cceEEEeccCCCCchHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      ..-+-|+||+||||||++++++..
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          31 GQIYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCC
Confidence            346889999999999999999654

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=90.01  E-value=0.057  Score=57.18  Aligned_cols=25  Identities=28%  Similarity=0.280  Sum_probs=21.3

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+-|+||+||||||+.++++..+
T Consensus        29 Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          29 GEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCC
Confidence            3468899999999999999997554

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=89.96  E-value=0.04  Score=57.92  Aligned_cols=25  Identities=20%  Similarity=0.222  Sum_probs=21.4

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+-|+||+||||||++++|+..+
T Consensus        26 Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          26 GEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCc
Confidence            3468999999999999999998654

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=89.91  E-value=0.05  Score=57.91  Aligned_cols=25  Identities=28%  Similarity=0.341  Sum_probs=21.5

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-|-|+||+||||||++++|+..+
T Consensus        28 Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          28 NSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            4578899999999999999997554

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.91  E-value=0.055  Score=54.79  Aligned_cols=25  Identities=20%  Similarity=0.434  Sum_probs=22.1

Q ss_pred             CccceeccCCCccchHhHHHHHhcc
Q psy4730         729 DVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       729 ~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      ++|++|+||+|+||+++++.++...
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHhC
Confidence            5899999999999999999888653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=89.85  E-value=0.2  Score=55.43  Aligned_cols=49  Identities=24%  Similarity=0.288  Sum_probs=31.0

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC-hhhccc
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-MGQLYG 1408 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t-~~eL~G 1408 (1513)
                      .+-|-|.||||+||||++..|..++..-+         .+|-+..++|.+-- -..++|
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~g---------~~vavlavDpss~~~ggailg  103 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFGMLLIREG---------LKVAVIAVDPSSPVTGGSILG  103 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHHHHHTT---------CCEEEEEECCC----------
T ss_pred             ceEEEeeCCCCCCHHHHHHHHHHHHHhcC---------CceeeecCCCceeeecccccc
Confidence            44689999999999999999998876522         23566667776632 333444

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=89.75  E-value=0.07  Score=57.17  Aligned_cols=26  Identities=19%  Similarity=0.178  Sum_probs=21.9

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      .+.|+|+||+|+||||+++.+++..+
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~~~~   54 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGINELN   54 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence            46899999999999999998776543

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=89.73  E-value=0.062  Score=56.82  Aligned_cols=25  Identities=32%  Similarity=0.284  Sum_probs=21.2

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+-|+||+||||||++++++..+
T Consensus        32 Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          32 GEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCC
Confidence            3468899999999999999997554

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.70  E-value=0.079  Score=53.71  Aligned_cols=19  Identities=37%  Similarity=0.431  Sum_probs=17.5

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+|+|++|+||||+++.+.
T Consensus        12 i~lvG~~~vGKTsLi~r~~   30 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYA   30 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            8999999999999998874

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=89.56  E-value=0.053  Score=54.00  Aligned_cols=27  Identities=22%  Similarity=0.421  Sum_probs=22.4

Q ss_pred             CCccceeccCCCccchHhHHHHHhccC
Q psy4730         728 NDVPMMFVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       728 ~~~~~ll~G~~g~GKt~~v~~~~~~~~  754 (1513)
                      .|..|+|+|+|||||||+.+.+...+.
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            345688999999999999998877653

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.56  E-value=0.055  Score=57.89  Aligned_cols=26  Identities=23%  Similarity=0.179  Sum_probs=22.0

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ...-|-|+||+||||||++++|+..+
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhccc
Confidence            34578999999999999999997554

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=89.53  E-value=0.054  Score=53.54  Aligned_cols=28  Identities=29%  Similarity=0.430  Sum_probs=22.6

Q ss_pred             ceeccCCCccchHhHHHHHhccCcCccc
Q psy4730         732 MMFVGPTGTGKSTIVLNLLLNLSKDKYL  759 (1513)
Q Consensus       732 ~ll~G~~g~GKt~~v~~~~~~~~~~~~~  759 (1513)
                      +.++|++||||||++..++..+....+.
T Consensus         5 i~itG~~GSGKTTL~~~L~~~l~~~g~~   32 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLIPALCARGIR   32 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHCCCe
Confidence            3489999999999999999876554443

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.53  E-value=0.088  Score=51.59  Aligned_cols=20  Identities=30%  Similarity=0.514  Sum_probs=18.3

Q ss_pred             EEEeccCCCCchHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      |.|+|+||+||||+++.|..
T Consensus         3 I~liG~~n~GKSSLin~l~g   22 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLN   22 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999864

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=89.51  E-value=0.067  Score=55.45  Aligned_cols=23  Identities=30%  Similarity=0.557  Sum_probs=19.9

Q ss_pred             ceeccCCCccchHhHHHHHhccC
Q psy4730         732 MMFVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       732 ~ll~G~~g~GKt~~v~~~~~~~~  754 (1513)
                      ++|+||+|+|||+++-.+...+.
T Consensus        12 i~lvGptGvGKTTTiAKLA~~~~   34 (211)
T d2qy9a2          12 ILMVGVNGVGKTTTIGKLARQFE   34 (211)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            77899999999999998876554

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.36  E-value=0.059  Score=55.62  Aligned_cols=25  Identities=28%  Similarity=0.208  Sum_probs=21.2

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+-|+||+||||||++++++..+
T Consensus        27 Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          27 GNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhccc
Confidence            3467899999999999999997554

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=89.31  E-value=0.068  Score=53.05  Aligned_cols=26  Identities=31%  Similarity=0.318  Sum_probs=22.5

Q ss_pred             CccceeccCCCccchHhHHHHHhccC
Q psy4730         729 DVPMMFVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       729 ~~~~ll~G~~g~GKt~~v~~~~~~~~  754 (1513)
                      ++-|+|+|++|||||++.+.+...+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            45688999999999999999988764

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=89.30  E-value=0.075  Score=52.19  Aligned_cols=19  Identities=32%  Similarity=0.457  Sum_probs=17.6

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+++|++|+||||+++.+.
T Consensus         8 I~ivG~~~vGKSSLi~~~~   26 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQ   26 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            8999999999999999874

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=89.26  E-value=0.1  Score=54.03  Aligned_cols=39  Identities=21%  Similarity=0.242  Sum_probs=26.9

Q ss_pred             CccceeccCCCccchHhHHHHHhccCcCcccceeecccccc
Q psy4730         729 DVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSART  769 (1513)
Q Consensus       729 ~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t  769 (1513)
                      .+.++|+||||+|||+++-.+...+...+.  .....+..|
T Consensus         6 ~~vi~lvGptGvGKTTTiaKLA~~~~~~g~--kV~lit~Dt   44 (207)
T d1okkd2           6 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGK--KVMFCAGDT   44 (207)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHHHTTTC--CEEEECCCC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCC--cEEEEEecc
Confidence            456789999999999999988765543332  233444555

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=89.09  E-value=0.063  Score=54.79  Aligned_cols=22  Identities=27%  Similarity=0.581  Sum_probs=19.2

Q ss_pred             ceeccCCCccchHhHHHHHhcc
Q psy4730         732 MMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       732 ~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      ++++|||||||||+.+.+...+
T Consensus         9 I~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           9 VFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999887754

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=89.00  E-value=0.07  Score=52.98  Aligned_cols=25  Identities=24%  Similarity=0.542  Sum_probs=21.4

Q ss_pred             ccceeccCCCccchHhHHHHHhccC
Q psy4730         730 VPMMFVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       730 ~~~ll~G~~g~GKt~~v~~~~~~~~  754 (1513)
                      .+++|.|||||||||+...+..++.
T Consensus         6 ~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           6 INILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            4589999999999999998887653

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.92  E-value=0.074  Score=57.86  Aligned_cols=25  Identities=24%  Similarity=0.295  Sum_probs=21.2

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-|.|+||+||||||++++++..+
T Consensus        62 Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          62 GEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCC
Confidence            4578899999999999999987543

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=88.89  E-value=0.072  Score=53.22  Aligned_cols=24  Identities=33%  Similarity=0.551  Sum_probs=21.7

Q ss_pred             ccceeccCCCccchHhHHHHHhcc
Q psy4730         730 VPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       730 ~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      +|++|+|++||||||+.+.+...+
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHh
Confidence            689999999999999999888765

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.74  E-value=0.12  Score=51.77  Aligned_cols=22  Identities=36%  Similarity=0.536  Sum_probs=18.7

Q ss_pred             cceeccCCCccchHhHHHHHhc
Q psy4730         731 PMMFVGPTGTGKSTIVLNLLLN  752 (1513)
Q Consensus       731 ~~ll~G~~g~GKt~~v~~~~~~  752 (1513)
                      -++++|+||||||++++.++..
T Consensus        16 liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          16 VVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4678999999999999988654

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.68  E-value=0.13  Score=53.41  Aligned_cols=24  Identities=29%  Similarity=0.321  Sum_probs=21.6

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      =|.+.|+-||||||.++.|++.+.
T Consensus         5 ~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           5 LILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHH
Confidence            478999999999999999998875

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=88.59  E-value=0.047  Score=57.80  Aligned_cols=25  Identities=28%  Similarity=0.239  Sum_probs=21.4

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+-|+||+||||||++++++...
T Consensus        31 Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          31 GERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCc
Confidence            3578999999999999999997543

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=88.56  E-value=0.076  Score=55.17  Aligned_cols=22  Identities=41%  Similarity=0.510  Sum_probs=19.2

Q ss_pred             ceeccCCCccchHhHHHHHhcc
Q psy4730         732 MMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       732 ~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      ++|+||+|+|||+++-.+...+
T Consensus        14 i~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2          14 IMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999998887654

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=88.36  E-value=0.086  Score=52.08  Aligned_cols=19  Identities=32%  Similarity=0.513  Sum_probs=17.5

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+++|++||||||+++.|.
T Consensus         5 i~ivG~~~~GKTsLi~~l~   23 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFN   23 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHc
Confidence            8899999999999999874

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=88.34  E-value=0.074  Score=52.68  Aligned_cols=24  Identities=25%  Similarity=0.457  Sum_probs=20.5

Q ss_pred             ccceeccCCCccchHhHHHHHhcc
Q psy4730         730 VPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       730 ~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      +-++|+|+||||||++.+.+...+
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            456789999999999999987765

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.20  E-value=0.1  Score=53.48  Aligned_cols=23  Identities=22%  Similarity=0.419  Sum_probs=20.1

Q ss_pred             cceEEEeccCCCCchHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      ..-|+|+|+||+||||+++.|..
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~   25 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTT   25 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            35799999999999999998863

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.08  E-value=0.1  Score=50.76  Aligned_cols=20  Identities=35%  Similarity=0.507  Sum_probs=18.0

Q ss_pred             EEEeccCCCCchHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      |+|+|++|+||||+++.|..
T Consensus         3 I~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999998754

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.03  E-value=0.094  Score=52.67  Aligned_cols=21  Identities=29%  Similarity=0.349  Sum_probs=18.9

Q ss_pred             eEEEeccCCCCchHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      -|+|+|+||+||||+++.|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999853

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=87.64  E-value=0.057  Score=57.84  Aligned_cols=26  Identities=27%  Similarity=0.267  Sum_probs=21.8

Q ss_pred             hcceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ...-|.|+||+||||||++++|+..+
T Consensus        43 ~Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          43 KGETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhcC
Confidence            34689999999999999999886543

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.60  E-value=0.11  Score=51.55  Aligned_cols=19  Identities=32%  Similarity=0.466  Sum_probs=17.8

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+++|++|+||||+++.|.
T Consensus         8 i~vvG~~~vGKTsLi~~l~   26 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYA   26 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            8999999999999999885

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.46  E-value=0.053  Score=55.43  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=21.3

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -|.|.|+.||||||+++.|++.++
T Consensus        11 ~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1          11 TVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             EEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            488999999999999999987664

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=87.40  E-value=0.14  Score=53.11  Aligned_cols=26  Identities=27%  Similarity=0.281  Sum_probs=23.0

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      ..|.|.|.|||||||+.+.|++.+..
T Consensus        25 ~vIwltGlsGsGKTTia~~L~~~l~~   50 (208)
T d1m7ga_          25 LTIWLTGLSASGKSTLAVELEHQLVR   50 (208)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            36999999999999999999988754

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.33  E-value=0.21  Score=51.74  Aligned_cols=26  Identities=19%  Similarity=0.267  Sum_probs=23.0

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .+++|.||+|||||-+.++++..+..
T Consensus        37 n~l~l~G~~G~GKTHLl~A~~~~~~~   62 (213)
T d1l8qa2          37 NPIFIYGSVGTGKTHLLQAAGNEAKK   62 (213)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHhcc
Confidence            47999999999999999999887654

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.15  E-value=0.12  Score=51.97  Aligned_cols=26  Identities=31%  Similarity=0.465  Sum_probs=22.4

Q ss_pred             CccceeccCCCccchHhHHHHHhccC
Q psy4730         729 DVPMMFVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       729 ~~~~ll~G~~g~GKt~~v~~~~~~~~  754 (1513)
                      |+-++|+||+|+|||++++.+....+
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            67789999999999999998877654

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=87.12  E-value=0.12  Score=51.52  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=19.3

Q ss_pred             cceEEEeccCCCCchHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      ..=|+|+|.+||||||+++.|.
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~   36 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFS   36 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHh
Confidence            3569999999999999998774

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.08  E-value=0.13  Score=50.85  Aligned_cols=19  Identities=32%  Similarity=0.490  Sum_probs=17.4

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+|+|++|+||||+++.|.
T Consensus         5 v~liG~~~vGKSsLi~rl~   23 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYC   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7899999999999998775

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=87.03  E-value=0.093  Score=54.31  Aligned_cols=27  Identities=30%  Similarity=0.423  Sum_probs=21.7

Q ss_pred             CCccceeccCCCccchHhHHHHHhccC
Q psy4730         728 NDVPMMFVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       728 ~~~~~ll~G~~g~GKt~~v~~~~~~~~  754 (1513)
                      ..+.++|+||+|+|||+++-.+...+.
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            344567899999999999998876554

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=87.01  E-value=0.11  Score=53.71  Aligned_cols=24  Identities=42%  Similarity=0.534  Sum_probs=16.5

Q ss_pred             ceeccCCCccchHhHHHHHhccCc
Q psy4730         732 MMFVGPTGTGKSTIVLNLLLNLSK  755 (1513)
Q Consensus       732 ~ll~G~~g~GKt~~v~~~~~~~~~  755 (1513)
                      ++|+||||+|||+++-.+...+..
T Consensus        15 i~lvGptGvGKTTTiAKLA~~~~~   38 (211)
T d1j8yf2          15 IMLVGVQGTGKATTAGKLAYFYKK   38 (211)
T ss_dssp             EEEECSCCC----HHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            778999999999999988876543

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=86.99  E-value=0.25  Score=54.64  Aligned_cols=41  Identities=24%  Similarity=0.270  Sum_probs=30.6

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCC
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI 1401 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~ 1401 (1513)
                      +-|-|.|+||+||||++..|..++..-+         .++-+..++|.+-
T Consensus        52 ~~igitG~pGaGKSTli~~l~~~~~~~g---------~~vaViavDpss~   92 (323)
T d2qm8a1          52 IRVGITGVPGVGKSTTIDALGSLLTAAG---------HKVAVLAVDPSST   92 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHHTT---------CCEEEEEECGGGG
T ss_pred             eEEeeeCCCCCCHHHHHHHHHHHHhhcC---------CceeeeecccccH
Confidence            4588999999999999999998765422         2455666676654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=86.95  E-value=0.12  Score=50.75  Aligned_cols=20  Identities=25%  Similarity=0.494  Sum_probs=18.0

Q ss_pred             eEEEeccCCCCchHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      -|+++|+|++||||+++.|.
T Consensus         3 kI~lvG~~nvGKSsLin~l~   22 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALA   22 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            37899999999999999885

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.95  E-value=0.13  Score=51.33  Aligned_cols=19  Identities=16%  Similarity=0.380  Sum_probs=17.3

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+++|++|+||||+++.+.
T Consensus         6 ivvvG~~~vGKTsli~r~~   24 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFT   24 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHh
Confidence            7899999999999998764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=86.94  E-value=0.12  Score=52.66  Aligned_cols=20  Identities=25%  Similarity=0.355  Sum_probs=18.7

Q ss_pred             eEEEeccCCCCchHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      -|.|+|+||+||||+++.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~   44 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHhc
Confidence            48999999999999999996

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.61  E-value=0.13  Score=51.90  Aligned_cols=19  Identities=37%  Similarity=0.403  Sum_probs=17.3

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+|+|++|+||||+++.|.
T Consensus         8 i~ivG~~~vGKTsLi~~l~   26 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYT   26 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHh
Confidence            8999999999999998774

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.50  E-value=0.15  Score=52.46  Aligned_cols=21  Identities=29%  Similarity=0.388  Sum_probs=19.0

Q ss_pred             eEEEeccCCCCchHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .|+|+|++|+||||+++.|..
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999998864

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=86.48  E-value=0.36  Score=49.03  Aligned_cols=26  Identities=27%  Similarity=0.503  Sum_probs=21.1

Q ss_pred             CCccceeccCCCccchHhHHHHHhcc
Q psy4730         728 NDVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       728 ~~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      ..+.++|+||++||||+++..++.-+
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHHHh
Confidence            34467799999999999998877655

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.48  E-value=0.12  Score=52.79  Aligned_cols=27  Identities=22%  Similarity=0.395  Sum_probs=22.3

Q ss_pred             cCCccceeccCCCccchHhHHHHHhcc
Q psy4730         727 QNDVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       727 ~~~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      +..+.++|.|||||||||+...+...+
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            455678899999999999999887654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.47  E-value=0.2  Score=52.12  Aligned_cols=22  Identities=18%  Similarity=0.108  Sum_probs=19.8

Q ss_pred             cceEEEeccCCCCchHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      .+..+++|+||+||||+++.|.
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~  116 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAIN  116 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHS
T ss_pred             CCeEEEECCCCCCHHHHHHhhc
Confidence            5678999999999999999984

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.41  E-value=0.11  Score=55.53  Aligned_cols=24  Identities=21%  Similarity=0.228  Sum_probs=20.7

Q ss_pred             cceEEEeccCCCCchHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      ..-+-|+||+||||||++++++..
T Consensus        28 GEi~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          28 GDVISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcC
Confidence            346889999999999999999754

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.33  E-value=0.071  Score=54.01  Aligned_cols=25  Identities=28%  Similarity=0.456  Sum_probs=20.8

Q ss_pred             ccceeccCCCccchHhHHHHHhccC
Q psy4730         730 VPMMFVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       730 ~~~ll~G~~g~GKt~~v~~~~~~~~  754 (1513)
                      ..++|+|+|||||||+.+.+...+.
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3567999999999999998877653

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=86.25  E-value=0.29  Score=49.72  Aligned_cols=115  Identities=19%  Similarity=0.266  Sum_probs=65.7

Q ss_pred             HHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHH
Q psy4730        1348 ILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFR 1427 (1513)
Q Consensus      1348 ~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR 1427 (1513)
                      .-.+.+++++|||++|||+.+..|++.+.-                .+|+           +.+...+-|--.+      
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G----------------~vis-----------~~N~~s~F~Lq~l------   96 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQG----------------AVIS-----------FVNSTSHFWLEPL------   96 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHHTC----------------EECC-----------CCCSSSCGGGGGG------
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHHhCC----------------EEEe-----------ccCCCCCcccccc------
Confidence            335579999999999999999999888641                1111           1111111121111      


Q ss_pred             HhhccCCCCceEEEEcCCCCh--HHHHh-hhcccCCCCceeec----CCCeeecCCCCeEEEee-cCC--CCCCcchhhc
Q psy4730        1428 EMAVSTTPDRKWIMFDGPIDA--VWIEN-MNTVLDDNKKLCLI----NGEIIKMSNTMNLIFEC-ENL--EFASPATVSR 1497 (1513)
Q Consensus      1428 ~~~~~~~~~~~WivfDG~~d~--~wiE~-LNsvLDdn~~L~L~----nGe~i~~~~~~~~iFE~-~~l--~~asPatvsR 1497 (1513)
                             ...+-+++|-.-.+  .++|. |-.+||.+ .+++.    +-..++.||   +++-+ .|.  ...+++.-||
T Consensus        97 -------~~~kv~l~dD~t~~~~~~~d~~lK~ll~G~-~vsvd~KhK~~vqi~~pP---liITsN~~~~~~d~~~~L~sR  165 (205)
T d1tuea_          97 -------TDTKVAMLDDATTTCWTYFDTYMRNALDGN-PISIDRKHKPLIQLKCPP---ILLTTNIHPAKDNRWPYLESR  165 (205)
T ss_dssp             -------TTCSSEEEEEECHHHHHHHHHHCHHHHHTC-CEEEC----CCEEECCCC---EEEEESSCTTSSSSCHHHHTS
T ss_pred             -------cCCeEEEEeccccchHHHHHHHHHhccCCC-eeeeecccCCcccccCCC---EEEEcCCCCCccccchhhhhe
Confidence                   11244556644333  34554 78888877 55554    222344443   45533 122  3456788999


Q ss_pred             cEEEEeeCC
Q psy4730        1498 VGMIYFELK 1506 (1513)
Q Consensus      1498 cg~v~~~~~ 1506 (1513)
                      .-++.|+..
T Consensus       166 i~~f~F~~~  174 (205)
T d1tuea_         166 ITVFEFPNA  174 (205)
T ss_dssp             CEEEECCSC
T ss_pred             EEEEECCCc
Confidence            999998843

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=86.19  E-value=0.17  Score=52.22  Aligned_cols=24  Identities=29%  Similarity=0.444  Sum_probs=21.8

Q ss_pred             EEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      |.+.|+.||||||.++.|++.+..
T Consensus         5 IviEG~dGsGKsT~~~~L~~~L~~   28 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVETLEQ   28 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHh
Confidence            677899999999999999998875

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.09  E-value=0.15  Score=50.34  Aligned_cols=20  Identities=20%  Similarity=0.262  Sum_probs=17.9

Q ss_pred             eEEEeccCCCCchHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      =|+|+|++|+||||+++.+.
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~   24 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFV   24 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            38999999999999998874

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=86.01  E-value=0.12  Score=52.33  Aligned_cols=25  Identities=36%  Similarity=0.597  Sum_probs=21.0

Q ss_pred             CccceeccCCCccchHhHHHHHhcc
Q psy4730         729 DVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       729 ~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      +-.++|.|||||||||+.+.+...+
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHh
Confidence            4567889999999999999887654

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.01  E-value=0.15  Score=50.61  Aligned_cols=20  Identities=30%  Similarity=0.288  Sum_probs=18.2

Q ss_pred             eEEEeccCCCCchHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      =|+|+|++|+||||+++.+.
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~   26 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFI   26 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999875

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.96  E-value=0.15  Score=50.58  Aligned_cols=20  Identities=20%  Similarity=0.363  Sum_probs=18.2

Q ss_pred             eEEEeccCCCCchHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      =|+|+|++|+||||+++.|.
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~   26 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFT   26 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            38999999999999999885

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.73  E-value=0.19  Score=51.51  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=21.9

Q ss_pred             EEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1354 LMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      |.|.|..||||||+++.|++.+..
T Consensus         3 I~ieG~dGsGKST~~~~L~~~l~~   26 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSGAFRA   26 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            678999999999999999988865

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.73  E-value=0.16  Score=50.10  Aligned_cols=19  Identities=21%  Similarity=0.413  Sum_probs=17.6

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+++|++|+||||+++.+.
T Consensus         5 i~vvG~~~vGKTSli~~l~   23 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFV   23 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7899999999999999875

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=85.71  E-value=0.12  Score=54.39  Aligned_cols=24  Identities=29%  Similarity=0.317  Sum_probs=20.7

Q ss_pred             hcceEEEeccCCCCchHHHHHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      ...-+-|+||+||||||++++|+.
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Confidence            345788999999999999999876

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=85.68  E-value=0.18  Score=50.48  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=19.0

Q ss_pred             cceEEEeccCCCCchHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      ..||++.|++|+||||+.-.|.
T Consensus        14 g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHH
Confidence            4699999999999999876654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.67  E-value=0.16  Score=50.61  Aligned_cols=19  Identities=21%  Similarity=0.431  Sum_probs=17.6

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+++|++|+||||+++.+.
T Consensus         7 i~vvG~~~vGKTsLi~~~~   25 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFT   25 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            8999999999999998874

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=85.49  E-value=0.18  Score=53.72  Aligned_cols=38  Identities=21%  Similarity=0.126  Sum_probs=27.7

Q ss_pred             hHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccC
Q psy4730         717 MQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       717 ~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~  754 (1513)
                      |-..+-.+.-..++++++.||+|+|||+++..++..+.
T Consensus        17 R~~el~~l~~~~~~~i~i~G~~G~GKTsLl~~~~~~~~   54 (283)
T d2fnaa2          17 REKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELN   54 (283)
T ss_dssp             CHHHHHHHHHTCSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence            43333333334667888999999999999999887653

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.48  E-value=0.17  Score=50.03  Aligned_cols=19  Identities=26%  Similarity=0.417  Sum_probs=17.5

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+|+|.+|+||||+++.+.
T Consensus         6 ivlvG~~~vGKTsLi~r~~   24 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYC   24 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7899999999999999875

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=85.47  E-value=0.17  Score=49.82  Aligned_cols=19  Identities=42%  Similarity=0.621  Sum_probs=17.3

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+++|++|+||||+++.|.
T Consensus         5 i~i~G~~~~GKTsLl~~l~   23 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIA   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7899999999999999884

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.32  E-value=0.17  Score=49.90  Aligned_cols=19  Identities=37%  Similarity=0.370  Sum_probs=17.6

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+|+|++|+||||+++.|.
T Consensus         6 i~viG~~~vGKTsli~~l~   24 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLI   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            8999999999999999875

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=85.31  E-value=0.13  Score=52.10  Aligned_cols=23  Identities=22%  Similarity=0.284  Sum_probs=19.5

Q ss_pred             cceeccCCCccchHhHHHHHhcc
Q psy4730         731 PMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       731 ~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      .++|.|||||||||+.+.+..++
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999998877654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.27  E-value=0.18  Score=50.21  Aligned_cols=19  Identities=26%  Similarity=0.452  Sum_probs=17.4

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+++|++|+||||+++.+.
T Consensus         5 i~~vG~~~vGKSsLi~~~~   23 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYV   23 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7899999999999998874

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.18  E-value=0.18  Score=49.97  Aligned_cols=20  Identities=20%  Similarity=0.248  Sum_probs=17.8

Q ss_pred             EEEeccCCCCchHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      |+|+|++|+||||+++-+..
T Consensus         5 i~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999997753

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.07  E-value=0.18  Score=49.78  Aligned_cols=20  Identities=15%  Similarity=0.225  Sum_probs=17.9

Q ss_pred             eEEEeccCCCCchHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      =|+|+|++|+||||+++.|.
T Consensus         6 Kv~liG~~~vGKTsLl~~~~   25 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFV   25 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            38899999999999999874

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=85.04  E-value=0.14  Score=51.58  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=19.8

Q ss_pred             cceeccCCCccchHhHHHHHhcc
Q psy4730         731 PMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       731 ~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      .++|.|||||||||+...+...+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36899999999999998887765

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.02  E-value=0.18  Score=49.50  Aligned_cols=19  Identities=32%  Similarity=0.461  Sum_probs=17.6

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+|+|++|+||||+++.+.
T Consensus         5 v~liG~~~vGKTsLl~~~~   23 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFC   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            8899999999999999874

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.01  E-value=0.18  Score=50.20  Aligned_cols=20  Identities=30%  Similarity=0.287  Sum_probs=17.8

Q ss_pred             eEEEeccCCCCchHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      =|+|+|++|+||||+++-+.
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~   27 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFI   27 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            38999999999999998774

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.00  E-value=0.18  Score=50.05  Aligned_cols=19  Identities=21%  Similarity=0.246  Sum_probs=17.2

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+|+|++|+||||+++.+.
T Consensus         5 i~viG~~~vGKTsLi~r~~   23 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFV   23 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7899999999999998764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.95  E-value=0.19  Score=49.64  Aligned_cols=19  Identities=16%  Similarity=0.378  Sum_probs=17.4

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+|+|++|+||||+++.+.
T Consensus         7 ivlvG~~~vGKTsli~~~~   25 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFT   25 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7899999999999998774

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.82  E-value=0.14  Score=51.19  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=19.1

Q ss_pred             ceeccCCCccchHhHHHHHhcc
Q psy4730         732 MMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       732 ~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      +++.|||||||||+...+...+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999998777654

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=84.82  E-value=0.17  Score=50.35  Aligned_cols=19  Identities=32%  Similarity=0.510  Sum_probs=17.5

Q ss_pred             eEEEeccCCCCchHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTL 1371 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L 1371 (1513)
                      =|+++|++|+||||+++.|
T Consensus        18 kI~vvG~~~vGKSsLi~~l   36 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQL   36 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999876

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.78  E-value=0.19  Score=50.21  Aligned_cols=22  Identities=32%  Similarity=0.433  Sum_probs=18.7

Q ss_pred             cceEEEeccCCCCchHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+=|+|+|++|+||||+++.+.
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~   23 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNS   23 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEEECCCCcCHHHHHHHHH
Confidence            4458999999999999998774

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.74  E-value=0.19  Score=50.51  Aligned_cols=19  Identities=26%  Similarity=0.447  Sum_probs=17.5

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+|+|.+||||||+++.+.
T Consensus         5 v~vvG~~~vGKSSLi~~l~   23 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYV   23 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7899999999999999874

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.66  E-value=0.2  Score=49.93  Aligned_cols=19  Identities=16%  Similarity=0.371  Sum_probs=17.5

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+++|++|+||||+++.+.
T Consensus         9 I~vvG~~~vGKSSli~~~~   27 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYV   27 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            8999999999999998775

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.61  E-value=0.2  Score=49.67  Aligned_cols=20  Identities=30%  Similarity=0.429  Sum_probs=17.9

Q ss_pred             eEEEeccCCCCchHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      =|+++|++|+||||+++-|.
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~   27 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFV   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            37899999999999999875

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=84.56  E-value=0.16  Score=53.78  Aligned_cols=25  Identities=24%  Similarity=0.345  Sum_probs=21.3

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+-|+||+||||||++++++..+
T Consensus        32 Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          32 GQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            4468899999999999999997554

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.54  E-value=3.3  Score=43.98  Aligned_cols=54  Identities=19%  Similarity=0.134  Sum_probs=34.2

Q ss_pred             CccceeccCCCccchHhHHHHHhccC--cCc-cc-ceeeccccccChhHHHHHHHHHh
Q psy4730         729 DVPMMFVGPTGTGKSTIVLNLLLNLS--KDK-YL-PNIINFSARTSSNITQEMIMAKL  782 (1513)
Q Consensus       729 ~~~~ll~G~~g~GKt~~v~~~~~~~~--~~~-~~-~~~~~fs~~t~~~~~q~~i~~~~  782 (1513)
                      ...|.++|..|+|||++++.+++...  ... +. ..|++.+...+.......+...+
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~~~~~~~  101 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILL  101 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHHHHHHHHH
Confidence            34567999999999999999886533  122 22 23666666555555544444433

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=84.46  E-value=0.19  Score=50.79  Aligned_cols=18  Identities=28%  Similarity=0.337  Sum_probs=16.1

Q ss_pred             EeccCCCCchHHHHHHHH
Q psy4730        1356 VVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1356 lvG~tgsGKTt~~~~L~~ 1373 (1513)
                      |.|++||||||+.+.|.+
T Consensus         8 itG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           8 ITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEECTTSCHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            679999999999999854

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=84.14  E-value=0.15  Score=53.92  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=20.2

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      .-+=|+||.||||||++++|+..+
T Consensus        29 ei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          29 EIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            346699999999999999997554

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.07  E-value=0.21  Score=49.01  Aligned_cols=19  Identities=32%  Similarity=0.436  Sum_probs=17.5

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+++|++|+||||+++.+.
T Consensus         3 v~vvG~~~vGKTsLi~r~~   21 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFM   21 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7899999999999999874

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.05  E-value=0.75  Score=48.00  Aligned_cols=53  Identities=15%  Similarity=0.053  Sum_probs=32.9

Q ss_pred             hHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHH
Q psy4730        1316 DELIEQIKINLAKRNAQATDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1316 ~~l~~~i~~~~~~~~l~~~~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      +.+.+.+.+.+....-.|.+....-+-.    +...+.+++++|||||||.+.-..+
T Consensus        27 ~~~~~~~~~~~~~~~~~p~~~Q~~~i~~----~l~g~~~~i~apTGsGKT~~~~~~~   79 (237)
T d1gkub1          27 DFLLKEFVEFFRKCVGEPRAIQKMWAKR----ILRKESFAATAPTGVGKTSFGLAMS   79 (237)
T ss_dssp             HHHHHHHHHHHHTTTCSCCHHHHHHHHH----HHTTCCEECCCCBTSCSHHHHHHHH
T ss_pred             chhHHHHHHHHHhccCCCCHHHHHHHHH----HHCCCCEEEEecCCChHHHHHHHHH
Confidence            3444555555555444566544433322    2356789999999999998765544

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.01  E-value=0.22  Score=50.09  Aligned_cols=20  Identities=30%  Similarity=0.346  Sum_probs=18.0

Q ss_pred             eEEEeccCCCCchHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      =|+|+|++|+||||+++.+.
T Consensus         7 KivviG~~~vGKTsli~~~~   26 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYT   26 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            38999999999999999875

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.97  E-value=0.36  Score=52.14  Aligned_cols=28  Identities=18%  Similarity=0.221  Sum_probs=22.0

Q ss_pred             hcceEE--EeccCCCCchHHHHHHHHHHHh
Q psy4730        1350 VRHGLM--VVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1350 ~~~gvi--lvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      .+.+.+  |.|++||||||+...|...+..
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~   53 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME   53 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHHHHHHH
Confidence            344544  6899999999999999888755

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=83.87  E-value=0.24  Score=46.68  Aligned_cols=21  Identities=14%  Similarity=0.039  Sum_probs=17.4

Q ss_pred             HHhcceEEEeccCCCCchHHH
Q psy4730        1348 ILVRHGLMVVGESFGGKTTAY 1368 (1513)
Q Consensus      1348 ~~~~~gvilvG~tgsGKTt~~ 1368 (1513)
                      +..+.-++|++|||||||.++
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            455678899999999999664

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.87  E-value=0.2  Score=49.89  Aligned_cols=20  Identities=30%  Similarity=0.433  Sum_probs=18.2

Q ss_pred             EEEeccCCCCchHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      |.|+|.||+||||+++.|..
T Consensus         8 I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           8 IAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEECSSSSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999953

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=83.86  E-value=0.96  Score=47.14  Aligned_cols=53  Identities=17%  Similarity=-0.036  Sum_probs=38.6

Q ss_pred             HHHHHHHcCccccHHHHHHHHHHHHHHHhcc--eEEEeccCCCCchHHHHHHHHH
Q psy4730        1322 IKINLAKRNAQATDWYIEKIIQVYEMILVRH--GLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1322 i~~~~~~~~l~~~~~~~~k~~qL~~~~~~~~--gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      .........+..++....-+-++.+.+...+  ..+|.|++|||||-++-..+..
T Consensus        45 ~~~~~~~lP~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~   99 (233)
T d2eyqa3          45 YQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL   99 (233)
T ss_dssp             HHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHH
T ss_pred             HHhhhhccccccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHH
Confidence            3444455667777777777777777777666  6799999999999987655433

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=83.79  E-value=0.83  Score=48.78  Aligned_cols=25  Identities=24%  Similarity=0.430  Sum_probs=20.5

Q ss_pred             CccceeccCCCccchHhHHHHHhcc
Q psy4730         729 DVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       729 ~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      ..-+.|.||+++|||+++..+...+
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3456789999999999998877754

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=83.73  E-value=0.21  Score=50.03  Aligned_cols=22  Identities=27%  Similarity=0.314  Sum_probs=19.2

Q ss_pred             cceEEEeccCCCCchHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      ..||++.|++|+||||+.-.|.
T Consensus        15 g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHH
Confidence            4699999999999999887664

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.67  E-value=0.22  Score=49.32  Aligned_cols=19  Identities=16%  Similarity=0.328  Sum_probs=17.3

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+|+|++|+||||+++.+.
T Consensus         4 i~lvG~~~vGKTsLi~~~~   22 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFG   22 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHh
Confidence            7899999999999998774

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.60  E-value=0.25  Score=48.91  Aligned_cols=28  Identities=29%  Similarity=0.461  Sum_probs=22.3

Q ss_pred             cceeccCCCccchHhHHHHHhccCcCcc
Q psy4730         731 PMMFVGPTGTGKSTIVLNLLLNLSKDKY  758 (1513)
Q Consensus       731 ~~ll~G~~g~GKt~~v~~~~~~~~~~~~  758 (1513)
                      .++++|++|||||+++..+..+--.+.+
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~~f~~~~   31 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTKRFIWEY   31 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSCCCSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCcc
Confidence            5899999999999999999875433333

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=83.54  E-value=0.26  Score=52.72  Aligned_cols=21  Identities=19%  Similarity=0.379  Sum_probs=19.4

Q ss_pred             ceEEEeccCCCCchHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      --|+|+|.||+||||+++.|.
T Consensus        33 l~I~LvG~tg~GKSSliN~il   53 (257)
T d1h65a_          33 LTILVMGKGGVGKSSTVNSII   53 (257)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHh
Confidence            479999999999999999985

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=83.54  E-value=0.18  Score=50.49  Aligned_cols=27  Identities=26%  Similarity=0.338  Sum_probs=21.9

Q ss_pred             ceeccCCCccchHhHHHHHhccCcCcc
Q psy4730         732 MMFVGPTGTGKSTIVLNLLLNLSKDKY  758 (1513)
Q Consensus       732 ~ll~G~~g~GKt~~v~~~~~~~~~~~~  758 (1513)
                      ++++|++||||||+++.+...+....+
T Consensus         4 ivi~G~~GsGKTT~~~~La~~L~~~~~   30 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVKEILDNQGI   30 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHTTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            568999999999999988877654444

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.50  E-value=0.2  Score=50.98  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=19.4

Q ss_pred             cceeccCCCccchHhHHHHHhcc
Q psy4730         731 PMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       731 ~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      -+++.||||||||+++..+...+
T Consensus        10 iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_          10 VIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            35588999999999999887754

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.46  E-value=0.23  Score=50.47  Aligned_cols=19  Identities=26%  Similarity=0.419  Sum_probs=17.6

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+|+|++|+||||+++.+.
T Consensus         9 ivvvG~~~vGKTsli~~l~   27 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFS   27 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHh
Confidence            8999999999999999875

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.43  E-value=0.25  Score=48.58  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=19.7

Q ss_pred             cceeccCCCccchHhHHHHHhc
Q psy4730         731 PMMFVGPTGTGKSTIVLNLLLN  752 (1513)
Q Consensus       731 ~~ll~G~~g~GKt~~v~~~~~~  752 (1513)
                      .|+++|++|+|||+++..+..+
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999988864

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=83.41  E-value=0.19  Score=48.77  Aligned_cols=22  Identities=36%  Similarity=0.629  Sum_probs=19.3

Q ss_pred             cceeccCCCccchHhHHHHHhc
Q psy4730         731 PMMFVGPTGTGKSTIVLNLLLN  752 (1513)
Q Consensus       731 ~~ll~G~~g~GKt~~v~~~~~~  752 (1513)
                      .|+++|++|||||+++..+..+
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988754

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=83.39  E-value=0.21  Score=51.57  Aligned_cols=26  Identities=27%  Similarity=0.497  Sum_probs=22.3

Q ss_pred             CccceeccCCCccchHhHHHHHhccC
Q psy4730         729 DVPMMFVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       729 ~~~~ll~G~~g~GKt~~v~~~~~~~~  754 (1513)
                      |+-++|+||+|+|||++++.++...+
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            56688999999999999999887643

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.25  E-value=0.22  Score=49.29  Aligned_cols=24  Identities=29%  Similarity=0.505  Sum_probs=20.7

Q ss_pred             ccceeccCCCccchHhHHHHHhcc
Q psy4730         730 VPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       730 ~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      -.|+++|++|||||+++..++.+-
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~~~   26 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVKGT   26 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            468999999999999999888643

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=83.22  E-value=0.27  Score=48.89  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=18.6

Q ss_pred             cceEEEeccCCCCchHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      ..||++.|++|+||||+.-.|.
T Consensus        15 g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHH
Confidence            4699999999999999875554

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=83.18  E-value=0.25  Score=48.93  Aligned_cols=20  Identities=20%  Similarity=0.258  Sum_probs=17.9

Q ss_pred             eEEEeccCCCCchHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      =|+|+|++|+||||+++.+.
T Consensus         6 KivlvG~~~vGKTsli~~~~   25 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFM   25 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            38899999999999998874

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.17  E-value=0.17  Score=50.37  Aligned_cols=20  Identities=30%  Similarity=0.494  Sum_probs=8.6

Q ss_pred             EEEeccCCCCchHHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      |+++|.+||||||+++.|..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999987753

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.14  E-value=0.24  Score=49.14  Aligned_cols=19  Identities=21%  Similarity=0.450  Sum_probs=17.4

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+|+|.+|+||||+++.+.
T Consensus         8 I~lvG~~~vGKTsll~~~~   26 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFI   26 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            8999999999999998774

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.93  E-value=0.81  Score=48.67  Aligned_cols=51  Identities=12%  Similarity=0.019  Sum_probs=40.3

Q ss_pred             HHHHHHcCccccHHHHHHHHHHHHHHHhcc--eEEEeccCCCCchHHHHHHHH
Q psy4730        1323 KINLAKRNAQATDWYIEKIIQVYEMILVRH--GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1323 ~~~~~~~~l~~~~~~~~k~~qL~~~~~~~~--gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      .+......+..|+....-+-++..-+....  .-+|.|.+|||||-++-..+.
T Consensus        74 ~~f~~~LPFeLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~  126 (264)
T d1gm5a3          74 EEFIKSLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAIL  126 (264)
T ss_dssp             HHHHHHSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHH
T ss_pred             HHHHhhccccCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHH
Confidence            334466788889998888888888877665  569999999999998766543

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.93  E-value=0.27  Score=48.46  Aligned_cols=23  Identities=22%  Similarity=0.530  Sum_probs=20.5

Q ss_pred             cceeccCCCccchHhHHHHHhcc
Q psy4730         731 PMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       731 ~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      .|+++|++|||||+++..+..+-
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~~   27 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            58999999999999999998653

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=82.92  E-value=0.21  Score=47.11  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=19.9

Q ss_pred             HhcCCccceeccCCCccchHhHH
Q psy4730         725 YLQNDVPMMFVGPTGTGKSTIVL  747 (1513)
Q Consensus       725 ~~~~~~~~ll~G~~g~GKt~~v~  747 (1513)
                      ++..++.++|++|||+|||.++.
T Consensus         3 ~l~~~~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           3 MLKKGMTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             TTSTTCEEEECCCTTSSTTTTHH
T ss_pred             HHHcCCcEEEEcCCCCChhHHHH
Confidence            56789999999999999997654

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=82.86  E-value=0.15  Score=50.24  Aligned_cols=25  Identities=28%  Similarity=0.352  Sum_probs=23.1

Q ss_pred             CCCCCCCCCccchHHHHHHhcCEEE
Q psy4730         665 PEGPAGTGKTETSKDLAKAVAKQCI  689 (1513)
Q Consensus       665 ~~G~~gtGKte~vk~La~~lG~~~~  689 (1513)
                      +.|++|+|||++.+.||+.+|.+++
T Consensus         5 liG~~GsGKsTi~k~La~~l~~~~~   29 (161)
T d1viaa_           5 FIGFMGSGKSTLARALAKDLDLVFL   29 (161)
T ss_dssp             EECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred             EECCCCCCHHHHHHHHHHHhCCCEE
Confidence            5699999999999999999999866

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=82.82  E-value=0.18  Score=50.07  Aligned_cols=20  Identities=30%  Similarity=0.443  Sum_probs=17.9

Q ss_pred             eEEEeccCCCCchHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      =|+++|++|+||||+++.+.
T Consensus        14 kIvlvG~~~vGKTSli~rl~   33 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLK   33 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            49999999999999998763

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=82.79  E-value=0.18  Score=50.42  Aligned_cols=23  Identities=17%  Similarity=0.320  Sum_probs=19.3

Q ss_pred             cceeccCCCccchHhHHHHHhcc
Q psy4730         731 PMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       731 ~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      .++|.|||||||||+...+..++
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999998887654

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=82.75  E-value=0.19  Score=50.47  Aligned_cols=19  Identities=32%  Similarity=0.443  Sum_probs=17.5

Q ss_pred             eEEEeccCCCCchHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTL 1371 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L 1371 (1513)
                      =|+++|++|+||||+++.|
T Consensus        19 KI~lvG~~~vGKTsLi~~l   37 (182)
T d1moza_          19 RILILGLDGAGKTTILYRL   37 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999876

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.72  E-value=0.26  Score=48.54  Aligned_cols=19  Identities=26%  Similarity=0.333  Sum_probs=17.5

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+|+|.+|+||||+++-+.
T Consensus         6 ivvvG~~~vGKTsli~r~~   24 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFV   24 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            8899999999999999874

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.72  E-value=0.26  Score=48.54  Aligned_cols=19  Identities=16%  Similarity=0.314  Sum_probs=17.4

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+|+|.+|+||||+++-|.
T Consensus         7 i~lvG~~~vGKTsli~rl~   25 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFV   25 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7899999999999999874

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.67  E-value=0.26  Score=49.10  Aligned_cols=19  Identities=26%  Similarity=0.494  Sum_probs=17.7

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+++|++|+||||+++.|.
T Consensus        10 i~vvG~~~vGKTsli~~l~   28 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFT   28 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            8999999999999999875

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.63  E-value=0.25  Score=49.06  Aligned_cols=20  Identities=30%  Similarity=0.403  Sum_probs=17.8

Q ss_pred             eEEEeccCCCCchHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      =|+|+|++|+||||+++.+.
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~   24 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFA   24 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            38999999999999998774

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.57  E-value=0.26  Score=49.34  Aligned_cols=19  Identities=42%  Similarity=0.622  Sum_probs=17.3

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+++|++|+||||+++.+.
T Consensus         5 ivliG~~~vGKTsli~r~~   23 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFA   23 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7899999999999998774

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.53  E-value=0.27  Score=48.68  Aligned_cols=19  Identities=32%  Similarity=0.356  Sum_probs=17.3

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+|+|++|+||||+++.+.
T Consensus         7 i~lvG~~~vGKTsll~~~~   25 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFF   25 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7899999999999998775

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.50  E-value=0.2  Score=50.19  Aligned_cols=23  Identities=35%  Similarity=0.683  Sum_probs=19.7

Q ss_pred             cceeccCCCccchHhHHHHHhcc
Q psy4730         731 PMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       731 ~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      .++|.|||||||||+...+...+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36788999999999999887765

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.49  E-value=0.21  Score=51.09  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=19.2

Q ss_pred             ceeccCCCccchHhHHHHHhcc
Q psy4730         732 MMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       732 ~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      ++++|.||||||++.+.+...+
T Consensus         5 i~l~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           5 IVMVGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999999887654

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=82.44  E-value=0.26  Score=50.71  Aligned_cols=20  Identities=25%  Similarity=0.252  Sum_probs=17.5

Q ss_pred             eEEEeccCCCCchHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      -|-|+|++||||||+.++|.
T Consensus         5 iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHH
Confidence            35589999999999999885

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=82.26  E-value=0.22  Score=53.09  Aligned_cols=25  Identities=20%  Similarity=0.312  Sum_probs=21.0

Q ss_pred             cceEEEeccCCCCchHHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
                      ..-+-|+||+||||||++++++..+
T Consensus        30 Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          30 GDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHCCC
Confidence            3468899999999999999997554

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.18  E-value=0.11  Score=54.79  Aligned_cols=25  Identities=24%  Similarity=0.287  Sum_probs=22.1

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      =|.|.|+.||||||.++.|++.+..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~l~~   28 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQLCED   28 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhc
Confidence            4789999999999999999987653

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.17  E-value=0.28  Score=48.45  Aligned_cols=20  Identities=35%  Similarity=0.396  Sum_probs=17.8

Q ss_pred             eEEEeccCCCCchHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      =|+++|++|+||||+++.+.
T Consensus         8 Ki~vvG~~~vGKTsli~~~~   27 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFK   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            38999999999999998764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.15  E-value=0.29  Score=48.39  Aligned_cols=19  Identities=26%  Similarity=0.459  Sum_probs=17.1

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+++|++|+||||+++-+.
T Consensus         6 i~vvG~~~vGKTsLi~~~~   24 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFV   24 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7899999999999998774

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.09  E-value=0.22  Score=50.43  Aligned_cols=22  Identities=23%  Similarity=0.454  Sum_probs=19.1

Q ss_pred             ceeccCCCccchHhHHHHHhcc
Q psy4730         732 MMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       732 ~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      +++.|||||||||+.+.+...+
T Consensus         4 I~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           4 VFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999887754

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=81.98  E-value=0.29  Score=53.58  Aligned_cols=26  Identities=23%  Similarity=0.243  Sum_probs=22.8

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHhH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTDI 1378 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~l 1378 (1513)
                      -|-|.|++||||||+.+.|+..+++.
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~~~  107 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLSRW  107 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHTTS
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHHhhh
Confidence            56689999999999999999988753

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.79  E-value=0.21  Score=51.21  Aligned_cols=48  Identities=15%  Similarity=0.049  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHcCcc-ccHHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHH
Q psy4730        1318 LIEQIKINLAKRNAQ-ATDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQ 1369 (1513)
Q Consensus      1318 l~~~i~~~~~~~~l~-~~~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~ 1369 (1513)
                      +.+.+...+.+.|+. +.+....-    ...+..+.-+++++|||||||+++.
T Consensus        10 ~~~~~~~~l~~~g~~~l~~~Q~~a----i~~l~~~~~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          10 ISSYAVGILKEEGIEELFPPQAEA----VEKVFSGKNLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             HHHHHHHHHHCC---CCCCCCHHH----HHHHTTCSCEEEECSSHHHHHHHHH
T ss_pred             hhHHHHHHHHHcCCCCCCHHHHHH----HHHHHcCCCEEEEcCCCCchhHHHH
Confidence            455556666666642 22222211    2223346678999999999998864

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.73  E-value=0.26  Score=49.10  Aligned_cols=24  Identities=17%  Similarity=0.289  Sum_probs=20.8

Q ss_pred             ccceeccCCCccchHhHHHHHhcc
Q psy4730         730 VPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       730 ~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      +.|+++|++|||||+++..+..+-
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~   26 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQ   26 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            568999999999999999887653

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=81.71  E-value=0.24  Score=50.19  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=20.0

Q ss_pred             cceeccCCCccchHhHHHHHhcc
Q psy4730         731 PMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       731 ~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      .++|.|||||||||+...+..++
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            57788999999999999887764

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.71  E-value=0.29  Score=49.74  Aligned_cols=24  Identities=33%  Similarity=0.217  Sum_probs=20.2

Q ss_pred             cceEEEeccCCCCchHHHHHHHHH
Q psy4730        1351 RHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1351 ~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      ..-++|.||||||||++..-++..
T Consensus        23 G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          23 GSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHH
Confidence            568999999999999998877643

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.65  E-value=0.31  Score=49.81  Aligned_cols=24  Identities=29%  Similarity=0.542  Sum_probs=21.1

Q ss_pred             ccceeccCCCccchHhHHHHHhcc
Q psy4730         730 VPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       730 ~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      |.|+++|++|+|||+++..+...-
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~~   24 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTGQ   24 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC
Confidence            578999999999999999998653

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.60  E-value=0.71  Score=52.45  Aligned_cols=54  Identities=26%  Similarity=0.311  Sum_probs=35.6

Q ss_pred             hHHHHHHHHHHHHcCccccHHHHHHHHHHHHHH-HhcceEEEeccCCCCchHHHHHHH
Q psy4730        1316 DELIEQIKINLAKRNAQATDWYIEKIIQVYEMI-LVRHGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1316 ~~l~~~i~~~~~~~~l~~~~~~~~k~~qL~~~~-~~~~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      .+....+...+.+.+++..   +..+.+..+.+ ...--|.|+|.||+||||+++.|.
T Consensus        23 ~e~~~~i~~~~~~~~~~~~---~~~i~~~l~~~~~~~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          23 QEILNLIELRMRAGNIQLT---NSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             HHHHHHHHHHHHHTCHHHH---HHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHH---HHHHHHHHHhcccCCcEEEEECCCCCCHHHHHHHHh
Confidence            3456667777777766533   33333333333 233469999999999999999985

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.60  E-value=0.2  Score=49.74  Aligned_cols=21  Identities=33%  Similarity=0.360  Sum_probs=18.0

Q ss_pred             ceEEEeccCCCCchHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      -=|+++|++|+||||+++.+.
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~   24 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHL   24 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC
T ss_pred             EEEEEECCCCcCHHHHHHHHH
Confidence            348999999999999998764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=81.58  E-value=0.41  Score=54.98  Aligned_cols=23  Identities=30%  Similarity=0.372  Sum_probs=18.7

Q ss_pred             ceEEEeccCCCCchHHHHHHHHH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
                      +.++++|+||||||++++.+...
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHH
Confidence            35799999999999998766543

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.54  E-value=0.25  Score=48.92  Aligned_cols=25  Identities=24%  Similarity=0.533  Sum_probs=21.4

Q ss_pred             CccceeccCCCccchHhHHHHHhcc
Q psy4730         729 DVPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       729 ~~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      +..|+|+|++|||||+++..+..+-
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~   29 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSY   29 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC
Confidence            3469999999999999999988653

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.51  E-value=0.33  Score=47.74  Aligned_cols=24  Identities=25%  Similarity=0.421  Sum_probs=20.8

Q ss_pred             ccceeccCCCccchHhHHHHHhcc
Q psy4730         730 VPMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       730 ~~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      ..++++|.+|||||+++..+..+-
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~~~   27 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCENK   27 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            358999999999999999988653

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=81.50  E-value=0.29  Score=48.98  Aligned_cols=21  Identities=24%  Similarity=0.482  Sum_probs=18.4

Q ss_pred             eEEEeccCCCCchHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
                      =|.++|.+|+||||+++.|..
T Consensus        10 kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHC
Confidence            378999999999999998853

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=81.44  E-value=0.11  Score=52.67  Aligned_cols=24  Identities=21%  Similarity=0.263  Sum_probs=20.9

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
                      -++|+||.||||||++.++.-++.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            457889999999999999987764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.41  E-value=0.31  Score=49.31  Aligned_cols=19  Identities=32%  Similarity=0.384  Sum_probs=17.2

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |+|+|++|+||||+++-+.
T Consensus         6 vvllG~~~vGKTSli~r~~   24 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYT   24 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            8899999999999988774

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.35  E-value=0.24  Score=49.71  Aligned_cols=23  Identities=39%  Similarity=0.665  Sum_probs=19.8

Q ss_pred             cceeccCCCccchHhHHHHHhcc
Q psy4730         731 PMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       731 ~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      .++|.||||||||++...+...+
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47788999999999999887654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=81.35  E-value=0.23  Score=49.83  Aligned_cols=19  Identities=26%  Similarity=0.286  Sum_probs=17.4

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |-|+|+|++||||+++.|.
T Consensus         4 VaiiG~~nvGKSSLin~L~   22 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVS   22 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSE
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7899999999999998874

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.35  E-value=0.39  Score=48.20  Aligned_cols=38  Identities=18%  Similarity=0.295  Sum_probs=26.6

Q ss_pred             hHHHHHHHH--hcCCccce--eccCCCccchHhHHHHHhccC
Q psy4730         717 MQNFFINLY--LQNDVPMM--FVGPTGTGKSTIVLNLLLNLS  754 (1513)
Q Consensus       717 ~~~~~~~~~--~~~~~~~l--l~G~~g~GKt~~v~~~~~~~~  754 (1513)
                      |..++.+..  ++...|++  +.|++|||||++.+.+...+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_           6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            444544443  34555654  789999999999999876654

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.28  E-value=0.25  Score=48.75  Aligned_cols=31  Identities=16%  Similarity=0.293  Sum_probs=24.6

Q ss_pred             eeccCCCccchHhHHHHHhccCcCcccceee
Q psy4730         733 MFVGPTGTGKSTIVLNLLLNLSKDKYLPNII  763 (1513)
Q Consensus       733 ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~  763 (1513)
                      -++|++||||||++..++..+....+....+
T Consensus         5 ~I~G~~gSGKTTli~~l~~~L~~~g~~v~vi   35 (165)
T d1xjca_           5 QVVGYKHSGKTTLMEKWVAAAVREGWRVGTV   35 (165)
T ss_dssp             EEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            4899999999999999998877665544333

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=81.25  E-value=0.33  Score=46.03  Aligned_cols=20  Identities=15%  Similarity=-0.001  Sum_probs=16.7

Q ss_pred             hcceEEEeccCCCCchHHHH
Q psy4730        1350 VRHGLMVVGESFGGKTTAYQ 1369 (1513)
Q Consensus      1350 ~~~gvilvG~tgsGKTt~~~ 1369 (1513)
                      .++..+|++|||||||+++-
T Consensus         7 ~~~~~ll~apTGsGKT~~~~   26 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVP   26 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHH
Confidence            45678999999999998753

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=81.03  E-value=0.36  Score=52.10  Aligned_cols=27  Identities=22%  Similarity=0.193  Sum_probs=20.3

Q ss_pred             ceEEEeccCCCCchHHHHHHHHHHHhH
Q psy4730        1352 HGLMVVGESFGGKTTAYQTLADSLTDI 1378 (1513)
Q Consensus      1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l 1378 (1513)
                      .-|-|.|+|||||||+.+.|...++..
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~i~~~~   31 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQIFRRE   31 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHhhc
Confidence            356789999999999999999988753

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.03  E-value=0.34  Score=48.46  Aligned_cols=28  Identities=18%  Similarity=0.389  Sum_probs=22.5

Q ss_pred             cceeccCCCccchHhHHHHHhccCcCcc
Q psy4730         731 PMMFVGPTGTGKSTIVLNLLLNLSKDKY  758 (1513)
Q Consensus       731 ~~ll~G~~g~GKt~~v~~~~~~~~~~~~  758 (1513)
                      .|+++|++|+|||+++..++.+--.+.+
T Consensus         4 KivliG~~~vGKTsli~r~~~~~f~~~~   31 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKDCFPENY   31 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCCCSSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCCcc
Confidence            5799999999999999999876433333

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=80.96  E-value=0.29  Score=53.15  Aligned_cols=22  Identities=18%  Similarity=0.149  Sum_probs=18.5

Q ss_pred             HHHhcceEEEeccCCCCchHHH
Q psy4730        1347 MILVRHGLMVVGESFGGKTTAY 1368 (1513)
Q Consensus      1347 ~~~~~~gvilvG~tgsGKTt~~ 1368 (1513)
                      ++..++-++|.||||||||+++
T Consensus         5 ~~~~~~~~lv~~~TGsGKT~~~   26 (305)
T d2bmfa2           5 IFRKKRLTIMDLHPGAGKTKRY   26 (305)
T ss_dssp             SSSTTCEEEECCCTTSSTTTTH
T ss_pred             HhhcCCcEEEEECCCCCHHHHH
Confidence            4556788999999999999865

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.91  E-value=0.27  Score=51.61  Aligned_cols=25  Identities=24%  Similarity=0.307  Sum_probs=22.1

Q ss_pred             eEEEeccCCCCchHHHHHHHHHHHh
Q psy4730        1353 GLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
                      =|.+.|+-||||||.++.|++.+..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhh
Confidence            3789999999999999999988754

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.82  E-value=0.32  Score=48.24  Aligned_cols=22  Identities=32%  Similarity=0.593  Sum_probs=19.8

Q ss_pred             cceeccCCCccchHhHHHHHhc
Q psy4730         731 PMMFVGPTGTGKSTIVLNLLLN  752 (1513)
Q Consensus       731 ~~ll~G~~g~GKt~~v~~~~~~  752 (1513)
                      .++++|++|||||+++..++.+
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            5889999999999999998865

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.75  E-value=0.3  Score=49.35  Aligned_cols=18  Identities=22%  Similarity=0.528  Sum_probs=17.2

Q ss_pred             EEEeccCCCCchHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTL 1371 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L 1371 (1513)
                      |+|+|++|+||||+++-+
T Consensus         5 ivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999999988

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.72  E-value=0.49  Score=48.45  Aligned_cols=48  Identities=21%  Similarity=0.094  Sum_probs=32.8

Q ss_pred             HHHHHHHHHcCccccHHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHH
Q psy4730        1320 EQIKINLAKRNAQATDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQT 1370 (1513)
Q Consensus      1320 ~~i~~~~~~~~l~~~~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~ 1370 (1513)
                      +.+.+.+.+.|+.-...+...++..   +...+-|++..|||||||.++-.
T Consensus        10 ~~l~~~l~~~g~~~pt~iQ~~aip~---~l~G~dvii~a~TGSGKTlayll   57 (209)
T d1q0ua_          10 PFIIEAIKTLRFYKPTEIQERIIPG---ALRGESMVGQSQTGTGKTHAYLL   57 (209)
T ss_dssp             HHHHHHHHHTTCCSCCHHHHHHHHH---HHHTCCEEEECCSSHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHH---HHCCCCeEeecccccccceeeee
Confidence            4566666777886444444555442   33467799999999999998743

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.69  E-value=0.34  Score=48.12  Aligned_cols=23  Identities=26%  Similarity=0.592  Sum_probs=20.4

Q ss_pred             cceeccCCCccchHhHHHHHhcc
Q psy4730         731 PMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       731 ~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      .|+++|++|||||+++..+..+-
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~~   30 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQSY   30 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            68999999999999999888653

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=80.64  E-value=0.29  Score=50.25  Aligned_cols=19  Identities=26%  Similarity=0.232  Sum_probs=16.8

Q ss_pred             EEEeccCCCCchHHHHHHH
Q psy4730        1354 LMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1354 vilvG~tgsGKTt~~~~L~ 1372 (1513)
                      |-|.|++||||||+.+.|.
T Consensus         5 IgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           5 VGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEECSTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5589999999999999884

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=80.57  E-value=0.4  Score=47.30  Aligned_cols=29  Identities=24%  Similarity=0.520  Sum_probs=23.2

Q ss_pred             HHHhcCCccceeccCCCccchHhHHHHHh
Q psy4730         723 NLYLQNDVPMMFVGPTGTGKSTIVLNLLL  751 (1513)
Q Consensus       723 ~~~~~~~~~~ll~G~~g~GKt~~v~~~~~  751 (1513)
                      +.+-+....++++|.+|||||+++..+..
T Consensus         9 ~~~~~k~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1           9 RLFNHQEHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             HHHTTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             HHhCCCeEEEEEECCCCCCHHHHHHHHhc
Confidence            33335556899999999999999998765

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=80.55  E-value=0.57  Score=45.79  Aligned_cols=48  Identities=19%  Similarity=0.252  Sum_probs=33.6

Q ss_pred             ccc-hhhhhHHHHHHHHh-----cCCccceeccCCCccchHhHHHHHhccCcCc
Q psy4730         710 IPT-NVTCMQNFFINLYL-----QNDVPMMFVGPTGTGKSTIVLNLLLNLSKDK  757 (1513)
Q Consensus       710 v~t-~~~~~~~~~~~~~~-----~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~  757 (1513)
                      +|. ..|.+...-+...+     +.+--++|.|+=|+|||+.++.+++.+....
T Consensus         8 l~~e~~t~~lg~~la~~l~~~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~   61 (158)
T d1htwa_           8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQG   61 (158)
T ss_dssp             ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCS
T ss_pred             CCCHHHHHHHHHHHHHHHHhccCCCCeEEEEecCCCccHHHHHHHHHhhccccc
Confidence            444 34555555555544     3344588999999999999999999886543

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.29  E-value=0.35  Score=48.62  Aligned_cols=28  Identities=18%  Similarity=0.395  Sum_probs=22.1

Q ss_pred             cceeccCCCccchHhHHHHHhccCcCcc
Q psy4730         731 PMMFVGPTGTGKSTIVLNLLLNLSKDKY  758 (1513)
Q Consensus       731 ~~ll~G~~g~GKt~~v~~~~~~~~~~~~  758 (1513)
                      .|+++|++|+|||+++..+..+.-.+.+
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~   38 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYANDAFPEEY   38 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSSCCCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCcC
Confidence            4789999999999999998875433333

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=80.25  E-value=0.2  Score=49.89  Aligned_cols=20  Identities=35%  Similarity=0.503  Sum_probs=18.1

Q ss_pred             eEEEeccCCCCchHHHHHHH
Q psy4730        1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus      1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
                      =|.|+|+|++||||+++.|.
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTC
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            49999999999999998884

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.17  E-value=0.39  Score=47.37  Aligned_cols=23  Identities=26%  Similarity=0.583  Sum_probs=20.3

Q ss_pred             cceeccCCCccchHhHHHHHhcc
Q psy4730         731 PMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       731 ~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      .|+++|++|||||+++..+...-
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~~   30 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKGQ   30 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            57899999999999999988653

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.15  E-value=0.41  Score=47.08  Aligned_cols=23  Identities=22%  Similarity=0.602  Sum_probs=20.5

Q ss_pred             cceeccCCCccchHhHHHHHhcc
Q psy4730         731 PMMFVGPTGTGKSTIVLNLLLNL  753 (1513)
Q Consensus       731 ~~ll~G~~g~GKt~~v~~~~~~~  753 (1513)
                      .|+++|.+|||||+++..+..+-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~~   27 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998754

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=80.11  E-value=0.3  Score=47.53  Aligned_cols=23  Identities=30%  Similarity=0.650  Sum_probs=20.0

Q ss_pred             ccceeccCCCccchHhHHHHHhc
Q psy4730         730 VPMMFVGPTGTGKSTIVLNLLLN  752 (1513)
Q Consensus       730 ~~~ll~G~~g~GKt~~v~~~~~~  752 (1513)
                      -.++++|++|||||+++..+..+
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            45899999999999999988754