Psyllid ID: psy4731

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430------
Protein Sequence
MIQNKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNELPKKIKARGKDAHLNHEELVQLMKWKQTLNYLVKVNTPRAVMMETKKAFKKLPNLELALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIEGIDYTTKEYLKFVNFINNTVERLNKESKNGTGTWNAHQVELALWTHYVAAELKPELLEDIRSLSSNNTNNTNGNSTTHVNGTNQALDTCSDESNLEPATQNNKPDESTVPAASSLPSEPEDTSSLQSLPSEKSLDDGSIGNNHTDDVTNDSVMTLGAESDTNTNDLPDPSTPTNNPPAPSQVEMDGADDNASAEPPLKKTKLSEPENEVANNGESSEAAKPEKNGASEPESVSESEAPVTKEGEQKVPVEPTAPVPVESKTETLRVMLINNSSSLLLE
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHcHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHcccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEHEcccccEEcc
Coil and Loop (DISEMBL)
miqnkkhyhkHHLWFIIIIIIIIIIIIIIIIIIIIIIIIInripihsnisnigwyqneLPKKIKARGKDAHLNHEELVQLMKWKQTLNYLVKVNTPRAVMMETKKAFKKLPNLELALSALSNLKGVGTTLASALLAaatpevapfmadeclmaipeiegidytTKEYLKFVNFINNTVERLNkeskngtgtwNAHQVELALWTHYVAAELKPELLEDIRSlssnntnntngnstthvngtnqaldtcsdesnlepatqnnkpdestvpaasslpsepedtsslqslpsekslddgsignnhtddvtndsvmtlgaesdtntndlpdpstptnnppapsqvemdgaddnasaepplkktklsepenevanngesseaakpekngasepesvseseapvtkegeqkvpveptapvpvesktETLRVMLINnsssllle
Flexible Loop (DISEMBL)
MIQNKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNELPKKIKARGKDAHLNHEELVQLMKWKQTLNYLVKVNTPRAVMMETKKAFKKLPNLELALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIEGIDYTTKEYLKFVNFINNTVERLNKESKNGTGTWNAHQVELALWTHYVAAELKPELLEDIRSLSSnntnntngnstthvngtNQALDTCSDESNLEPatqnnkpdesTVPAASSLPSEPEDTSSLQSLPSEKSLDDGSIGNNHTDDVTNDSVMTLGAESdtntndlpdpstPTNNPPAPSQVEMDGADDNASAEpplkktklsepenevanngesseaakpekngasepesvseseapvtkegeqkvpveptapvpvesktetlrvMLINNSSSLLLE
Low Complexity Region (SEG)
MIQNKKHYHKHHLWFiiiiiiiiiiiiiiiiiiiiiiiiiNRIPIHSNISNIGWYQNELPKKIKARGKDAHLNHEELVQLMKWKQTLNYLVKVNTPRAVMMETKKAFKKlpnlelalsalsnlKGVGttlasallaaatPEVAPFMADECLMAIPEIEGIDYTTKEYLKFVNFINNTVERLNKESKNGTGTWNAHQVELALWTHYVAAELKPELLEDIRSLssnntnntngnstthvngtnQALDTCSDESNLEPATQNNKPDESTVPAASSLPSEPEDTSSLQSLPSEKSLDDGSIGNNHTDDVTNDSVMTLGAESdtntndlpdpstptnnppapSQVEMDGADDNASAEPPLKKTKLSEPENEVANNGESSEAAKPEKNGasepesvseseapvTKEGEQKvpveptapvpveSKTETLRVMLINNSSSLLLE
Disordered region (IsUnstruct)
******HYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNELPKKIKARGKDAHLNHEELVQLMKWKQTLNYLVKVNTPRAVMMETKKAFKKLPNLELALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIEGIDYTTKEYLKFVNFINNTVERLNKESKNGTGTWNAHQVELALWTHYVAAELKPELL*****************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
*********KHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNELPKKIKARGK*AHLNHEELVQLMKWKQTLNYLVKVNTPRAVMMETKKAFKKLPNLELALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIEGIDYTTKEYLKFVNFINNTVERL**************QVELALWTH************************************************************************************************************************************************************************************************************************************LLLE
Disordered Region (DISEMBL)
********HKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNELPKKIKARGKDAHLNHEELVQLMKWKQTLNYLVKVNTPRAVMMETKKAFKKLPNLELALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIEGIDYTTKEYLKFVNFINNTVERLNKESKNGTGTWNAHQVELALWTHYVAAELKPELLEDIRSLSSNNTNNTNGNSTTHVNGTNQALDTC***********************************************GSIGNNHTDDVTNDSVMTLGAESDTNTNDLPDPSTPTNNPPAPSQVEMDGADDNASAEPPLK***************************************************EPTAPVPVESKTETLRVMLINNSSSLLLE
Disordered Region (DISPRO)
*I*NKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNELPKKIKARGKDAHLNHEELVQLMKWKQTLNYLVKVNTPRAVMMETKKAFKKLPNLELALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIEGIDYTTKEYLKFVNFINNTVERLNKESKNGTGTWNAHQVELALWTHYVAAELKPELLED**********************************************************************************************************************************************************************************************************ETLRVM*INNSSSLLL*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIQNKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNELPKKIKARGKDAHLNHEELVQLMKWKQTLNYLVKVNTPRAVMMETKKAFKKLPNLELALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIEGIDYTTKEYLKFVNFINNTVERLNKESKNGTGTWNAHQVELALWTHYVAAELKPELLEDIRSLSSNNTNNTNGNSTTHVNGTNQALDTCSDESNLEPATQNNKPDESTVPAASSLPSEPEDTSSLQSLPSEKSLDDGSIGNNHTDDVTNDSVMTLGAESDTNTNDLPDPSTPTNNPPAPSQVEMDGADDNASAEPPLKKTKLSEPENEVANNGESSEAAKPEKNGASEPESVSESEAPVTKEGEQKVPVEPTAPVPVESKTETLRVMLINNSSSLLLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	436
322797015	344	hypothetical protein SINV_05549 [Solenop	0.637	0.808	0.574	3e-74
332022829	339	hypothetical protein G5I_08549 [Acromyrm	0.646	0.831	0.581	6e-74
383865245	335	PREDICTED: uncharacterized protein LOC10	0.628	0.817	0.577	7e-74
307207655	342	hypothetical protein EAI_17407 [Harpegna	0.642	0.818	0.569	2e-73
380012050	333	PREDICTED: uncharacterized protein LOC10	0.628	0.822	0.587	2e-73
307179458	338	hypothetical protein EAG_02729 [Camponot	0.644	0.831	0.571	2e-73
350422115	412	PREDICTED: hypothetical protein LOC10074	0.628	0.665	0.587	2e-73
340725023	403	PREDICTED: hypothetical protein LOC10064	0.628	0.679	0.587	3e-73
242017398	311	conserved hypothetical protein [Pediculu	0.506	0.710	0.659	3e-72
48098060	334	PREDICTED: hypothetical protein LOC41048	0.630	0.823	0.574	5e-71

>gi|322797015|gb|EFZ19329.1| hypothetical protein SINV_05549 [Solenopsis invicta]

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 185/322 (57%), Positives = 216/322 (67%), Gaps = 44/322 (13%)

Query: 54  WYQNELPKKIKARGKDAHLNHEELVQLMKWKQ-------TLNYLVKVNTPRAVMMETKKA 106
           WYQNELPKKIK+RGKDAHLNHEELVQ MKWKQ        L+YLVKVNTPRAVM ETKKA
Sbjct: 50  WYQNELPKKIKSRGKDAHLNHEELVQTMKWKQIRGKFYPQLSYLVKVNTPRAVMAETKKA 109

Query: 107 FKKLPNLELALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIEGIDYTTKE 166
           FKKLPNLE A++ALSNLKGVGTT+ASALLAAA+PE APFMADECLMAIPEIEGIDYTTKE
Sbjct: 110 FKKLPNLEQAITALSNLKGVGTTMASALLAAASPENAPFMADECLMAIPEIEGIDYTTKE 169

Query: 167 YLKFVNFINNTVERLNKESKNGTGTWNAHQVELALWTHYVAAELKPELLEDIRSLSSNNT 226
           YL FV  I NTVERLNK++ NG  TW+ H+VELALWTHYVA+ELKPELL+ I   +    
Sbjct: 170 YLNFVQHIQNTVERLNKQTSNGK-TWSPHRVELALWTHYVASELKPELLDGIPGSTE--- 225

Query: 227 NNTNGNSTTHVNGTNQALDTCSDESNLEPATQNNKPDESTVPAASSLPSEPEDTSSLQSL 286
              NGNS    NG  +A +  SD+SN E  T  N  D    PAA   P+  ++ S+  S 
Sbjct: 226 ---NGNSHGASNG--EATE-PSDDSNQE--TVANGKD---TPAALD-PAAIDENSTTTSF 273

Query: 287 PSEKSLD---------DGSIGNNHTDDVTNDSVMTLGAESDTNTNDLPDPSTPTNNPPAP 337
            +E SLD         D  I  +H  + TNDS++T    +D++ N  P P+   +     
Sbjct: 274 -TEDSLDKPATPITAGDHPIVGDHPSEDTNDSLIT----NDSSNNATPRPTDSED----- 323

Query: 338 SQVEMDGADDNASAEPPLKKTK 359
              E D  D   + EPP KK K
Sbjct: 324 --TEEDSQDAQDTQEPPTKKNK 343

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022829|gb|EGI63102.1| hypothetical protein G5I_08549 [Acromyrmex echinatior]

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 182/313 (58%), Positives = 214/313 (68%), Gaps = 31/313 (9%)

Query: 54  WYQNELPKKIKARGKDAHLNHEELVQLMKWKQ-------TLNYLVKVNTPRAVMMETKKA 106
           WYQNELPKKIKARGKDAHLNHEELVQ MKWKQ        L+YLVKVNTPRAVM ETKKA
Sbjct: 50  WYQNELPKKIKARGKDAHLNHEELVQTMKWKQIRGKFYPQLSYLVKVNTPRAVMAETKKA 109

Query: 107 FKKLPNLELALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIEGIDYTTKE 166
           FKKLPNLE A++ALSNLKGVGTT+ASALLAAA+PE APFMADECLMAIPEIEGIDYTTKE
Sbjct: 110 FKKLPNLEQAITALSNLKGVGTTMASALLAAASPENAPFMADECLMAIPEIEGIDYTTKE 169

Query: 167 YLKFVNFINNTVERLNKESKNGTGTWNAHQVELALWTHYVAAELKPELLEDIRSLSSNNT 226
           YL FV  I NTVERLNK++ NG  TW+ H+VELALWTHYVA+ELKPELL+ I   +    
Sbjct: 170 YLNFVQHIQNTVERLNKQASNGK-TWSPHRVELALWTHYVASELKPELLDGIPGSTE--- 225

Query: 227 NNTNGNSTTHVNGTNQALDTCSDESNLEPATQNNKPDESTVPAASSLPSEPEDTSSLQSL 286
              NGNS +  NG  +A +  SD+SN E  T  N  D    PAA   P+  ++ S+  S 
Sbjct: 226 ---NGNSHSASNG--EATE-PSDDSNQE--TVANGKD---TPAALD-PAAIDENSTTTSF 273

Query: 287 PSEKSLDDGSIGNNHTDDVTNDSVMTLGAESDTNTNDLPDPSTPTNNPPAPSQVEMDGAD 346
            +E S+D  +        +T      +GA  DTN + + + S+  N  P P+  E    D
Sbjct: 274 -TEDSMDKPATP------ITASDHPVVGASEDTNDSLITNDSS-NNATPRPTDSEDTEED 325

Query: 347 DNASAEPPLKKTK 359
              + EPP KK+K
Sbjct: 326 SQDAQEPPTKKSK 338

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865245|ref|XP_003708085.1| PREDICTED: uncharacterized protein LOC100882642 [Megachile rotundata]

 Score =  284 bits (726), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 183/317 (57%), Positives = 210/317 (66%), Gaps = 43/317 (13%)

Query: 54  WYQNELPKKIKARGKDAHLNHEELVQLMKWKQ-------TLNYLVKVNTPRAVMMETKKA 106
           WYQNELPKKIK+RGKDAHLNHEELVQ MKWKQ        L+YLVKVNTPRAVM ETKKA
Sbjct: 50  WYQNELPKKIKSRGKDAHLNHEELVQTMKWKQIRGKFYPQLSYLVKVNTPRAVMAETKKA 109

Query: 107 FKKLPNLELALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIEGIDYTTKE 166
           FKKLPNLE A++ALSNLKGVGTT+ASALLAAA+PE APFMADECLMAIPEIEGIDYTTKE
Sbjct: 110 FKKLPNLEQAITALSNLKGVGTTMASALLAAASPENAPFMADECLMAIPEIEGIDYTTKE 169

Query: 167 YLKFVNFINNTVERLNKESKNGTGTWNAHQVELALWTHYVAAELKPELLEDIRSLSSNNT 226
           YL FV  I NTVERLNK++ NG  TW+ H+VELALWTHYVA+ELKPELL+ I   +    
Sbjct: 170 YLNFVQHIQNTVERLNKQTSNGK-TWSPHRVELALWTHYVASELKPELLDGIPGSTE--- 225

Query: 227 NNTNGNSTTHVNGTNQALDTCSDESNLEPATQNNKPDESTVPAASSLPSEPEDTSSLQSL 286
              NGNS  H   +N      SD+SN E A  N K   S  PAA        D +S+ + 
Sbjct: 226 ---NGNS--HPAASNGEATEPSDDSNQEVAV-NGKELGSIDPAAI-------DENSMTTS 272

Query: 287 PSEKSLDDG----SIGNNHTDDVTNDSVMTLGAESDTNTNDLPDPSTPTNNPPAPSQVEM 342
            +E S+D      ++G    D  TNDS+        TN ND       +NN P P+  E 
Sbjct: 273 FTEDSMDKPATPITVGVASED--TNDSLA-------TNEND------DSNNTPRPTDSED 317

Query: 343 DGADDNASAEPPLKKTK 359
                +   EPP KK+K
Sbjct: 318 TEDSQDVVQEPPTKKSK 334

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207655|gb|EFN85293.1| hypothetical protein EAI_17407 [Harpegnathos saltator]

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 181/318 (56%), Positives = 211/318 (66%), Gaps = 38/318 (11%)

Query: 54  WYQNELPKKIKARGKDAHLNHEELVQLMKWKQ-------TLNYLVKVNTPRAVMMETKKA 106
           WYQNELPKKIK+RGKDAHLNHEELVQ MKWKQ        L+YLVKVNTPRAVM ETKKA
Sbjct: 50  WYQNELPKKIKSRGKDAHLNHEELVQTMKWKQIRGKFYPQLSYLVKVNTPRAVMAETKKA 109

Query: 107 FKKLPNLELALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIEGIDYTTKE 166
           FKKLPNLE A++ALSNLKGVGTT+ASALLAAA+PE APFMADECLMAIPEIEGIDYTTKE
Sbjct: 110 FKKLPNLEQAITALSNLKGVGTTMASALLAAASPENAPFMADECLMAIPEIEGIDYTTKE 169

Query: 167 YLKFVNFINNTVERLNKESKNGTGTWNAHQVELALWTHYVAAELKPELLEDIRSLSSNNT 226
           YL FV  I NTVERLNK++ NG  TW+ H+VELALWTHYVA+ELK ELL+ I   +    
Sbjct: 170 YLNFVQHIQNTVERLNKQTSNGK-TWSPHRVELALWTHYVASELKSELLDGIPGSTE--- 225

Query: 227 NNTNGNSTTHVNGTNQALDTCSDESNLEPATQNNKPDESTVPAASSLPSEPEDTSSLQSL 286
              NGNS    NG  +A +  SD+SN E    N K  E+    A  L     D +S  + 
Sbjct: 226 ---NGNSHGPSNG--EATE-PSDDSNQETMMANGK--ETPAAVAGMLDPAAIDENSTTTS 277

Query: 287 PSEKSLDDGSIGNNHTDDV-----TNDSVMTLGAESDTNTNDLPDPSTPTNNPPAPSQVE 341
            +E S+D  +     +D V     TNDS++       TN +D       +NN P P+  E
Sbjct: 278 FTEDSMDKPATPITASDAVVASEDTNDSLI-------TNDDD-------SNNTPRPTDSE 323

Query: 342 MDGADDNASAEPPLKKTK 359
               D   + EPP KK+K
Sbjct: 324 DTEEDSQDAQEPPSKKSK 341

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012050|ref|XP_003690103.1| PREDICTED: uncharacterized protein LOC100865574 [Apis florea]

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 185/315 (58%), Positives = 212/315 (67%), Gaps = 41/315 (13%)

Query: 54  WYQNELPKKIKARGKDAHLNHEELVQLMKWKQ-------TLNYLVKVNTPRAVMMETKKA 106
           WYQNELPKKIK+RGKDAHLNHEELVQ MKWKQ        L+YLVKVNTPRAVM ETKKA
Sbjct: 50  WYQNELPKKIKSRGKDAHLNHEELVQTMKWKQIRGKFYPQLSYLVKVNTPRAVMAETKKA 109

Query: 107 FKKLPNLELALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIEGIDYTTKE 166
           FKKLPNLE A++ALSNLKGVGTT+ASALLAAA+PE APFMADECLMAIPEIEGIDYTTKE
Sbjct: 110 FKKLPNLEQAITALSNLKGVGTTMASALLAAASPENAPFMADECLMAIPEIEGIDYTTKE 169

Query: 167 YLKFVNFINNTVERLNKESKNGTGTWNAHQVELALWTHYVAAELKPELLEDIRSLSSNNT 226
           YL FV  I NTVERLNK++ NG  TW+ H+VELALWTHYVA+ELKPELL+ I   +    
Sbjct: 170 YLNFVQHIQNTVERLNKQTSNGK-TWSPHRVELALWTHYVASELKPELLDGIPGSTE--- 225

Query: 227 NNTNGNSTTHVNGTNQALDTCSDESNLEPATQNNKPDESTVPAASSLPSEPEDTSSLQSL 286
              NGNS    NG  +A +  SD+SN E A  N K   S  PAA        D +S+ + 
Sbjct: 226 ---NGNSHPPSNG--EATEP-SDDSNQE-AALNGKELGSIDPAAI-------DENSMTTS 271

Query: 287 PSEKSLDDGS--IGNNHTDDVTNDSVMTLGAESDTNTNDLPDPSTPTNNPPAPSQVEMDG 344
            +E S+D  +  I      + TNDS+        TN ND       +NN P P+  E D 
Sbjct: 272 FTEDSMDKPATPITAAVASEDTNDSLA-------TNDND------DSNNTPRPTDSE-DT 317

Query: 345 ADDNASAEPPLKKTK 359
            D     EPP KK+K
Sbjct: 318 EDSQDVQEPPTKKSK 332

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307179458|gb|EFN67782.1| hypothetical protein EAG_02729 [Camponotus floridanus]

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 179/313 (57%), Positives = 209/313 (66%), Gaps = 32/313 (10%)

Query: 54  WYQNELPKKIKARGKDAHLNHEELVQLMKWKQ-------TLNYLVKVNTPRAVMMETKKA 106
           WYQNELPKKIK+RGKDAHLNHEELVQ MKWKQ        L+YLVKVNTPRAVM ETKKA
Sbjct: 50  WYQNELPKKIKSRGKDAHLNHEELVQTMKWKQIRGKFYPQLSYLVKVNTPRAVMAETKKA 109

Query: 107 FKKLPNLELALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIEGIDYTTKE 166
           FKKLPNLE A++ALSNLKGVGTT+ASALLAAA+PE APFMADECLMAIPEIEGIDYTTKE
Sbjct: 110 FKKLPNLEQAITALSNLKGVGTTMASALLAAASPENAPFMADECLMAIPEIEGIDYTTKE 169

Query: 167 YLKFVNFINNTVERLNKESKNGTGTWNAHQVELALWTHYVAAELKPELLEDIRSLSSNNT 226
           YL FV  I NTVERLNK++ NG  TW+ H+VELALWTHYVA+ELKPELL+ I   +    
Sbjct: 170 YLNFVQHIQNTVERLNKQTSNGK-TWSPHRVELALWTHYVASELKPELLDGIPGSTE--- 225

Query: 227 NNTNGNSTTHVNGTNQALDTCSDESNLEPATQNNKPDESTVPAASSLPSEPEDTSSLQSL 286
              NGNS    NG  +A +  SD+SN E    N K      PAA        D +S  + 
Sbjct: 226 ---NGNSHGASNG--EATE-PSDDSNQE-TVANGKDTAPLDPAAI-------DENSTTTS 271

Query: 287 PSEKSLDDGSIGNNHTDDVTNDSVMTLGAESDTNTNDLPDPSTPTNNPPAPSQVEMDGAD 346
            +E S+D  +        +T      +GA  DTN + + + S+  N  P P+  E    D
Sbjct: 272 FTEDSMDKPAT------PITAGDHAVVGASEDTNDSIITNDSS-NNATPRPTDSEDTEED 324

Query: 347 DNASAEPPLKKTK 359
              + EPP KK+K
Sbjct: 325 SQDAQEPPTKKSK 337

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422115|ref|XP_003493061.1| PREDICTED: hypothetical protein LOC100742446 [Bombus impatiens]

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 185/315 (58%), Positives = 212/315 (67%), Gaps = 41/315 (13%)

Query: 54  WYQNELPKKIKARGKDAHLNHEELVQLMKWKQ-------TLNYLVKVNTPRAVMMETKKA 106
           WYQNELPKKIK+RGKDAHLNHEELVQ MKWKQ        L+YLVKVNTPRAVM ETKKA
Sbjct: 50  WYQNELPKKIKSRGKDAHLNHEELVQTMKWKQIRGKFYPQLSYLVKVNTPRAVMAETKKA 109

Query: 107 FKKLPNLELALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIEGIDYTTKE 166
           FKKLPNLE A++ALSNLKGVGTT+ASALLAAA+PE APFMADECLMAIPEIEGIDYTTKE
Sbjct: 110 FKKLPNLEQAITALSNLKGVGTTMASALLAAASPENAPFMADECLMAIPEIEGIDYTTKE 169

Query: 167 YLKFVNFINNTVERLNKESKNGTGTWNAHQVELALWTHYVAAELKPELLEDIRSLSSNNT 226
           YL FV  I NTVERLNK++ NG  TW+ H+VELALWTHYVA+ELKPELL+ I   +    
Sbjct: 170 YLNFVQHIQNTVERLNKQTSNGK-TWSPHRVELALWTHYVASELKPELLDGIPGSTE--- 225

Query: 227 NNTNGNSTTHVNGTNQALDTCSDESNLEPATQNNKPDESTVPAASSLPSEPEDTSSLQSL 286
              NGNS    NG  +A +  SD+SN E A  N K   S  PAA        D +S+ + 
Sbjct: 226 ---NGNSHPPSNG--EATEP-SDDSNQEVAV-NGKELGSIDPAAI-------DENSMTTS 271

Query: 287 PSEKSLDDGS--IGNNHTDDVTNDSVMTLGAESDTNTNDLPDPSTPTNNPPAPSQVEMDG 344
            +E S+D  +  I      + TNDS+        TN ND       +NN P P+  E D 
Sbjct: 272 FTEDSMDKPATPITAAVASEDTNDSLA-------TNDND------DSNNTPRPTDSE-DT 317

Query: 345 ADDNASAEPPLKKTK 359
            D     EPP KK+K
Sbjct: 318 EDSQDVQEPPTKKSK 332

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725023|ref|XP_003400874.1| PREDICTED: hypothetical protein LOC100648913 [Bombus terrestris]

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 185/315 (58%), Positives = 212/315 (67%), Gaps = 41/315 (13%)

Query: 54  WYQNELPKKIKARGKDAHLNHEELVQLMKWKQ-------TLNYLVKVNTPRAVMMETKKA 106
           WYQNELPKKIK+RGKDAHLNHEELVQ MKWKQ        L+YLVKVNTPRAVM ETKKA
Sbjct: 50  WYQNELPKKIKSRGKDAHLNHEELVQTMKWKQIRGKFYPQLSYLVKVNTPRAVMAETKKA 109

Query: 107 FKKLPNLELALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIEGIDYTTKE 166
           FKKLPNLE A++ALSNLKGVGTT+ASALLAAA+PE APFMADECLMAIPEIEGIDYTTKE
Sbjct: 110 FKKLPNLEQAITALSNLKGVGTTMASALLAAASPENAPFMADECLMAIPEIEGIDYTTKE 169

Query: 167 YLKFVNFINNTVERLNKESKNGTGTWNAHQVELALWTHYVAAELKPELLEDIRSLSSNNT 226
           YL FV  I NTVERLNK++ NG  TW+ H+VELALWTHYVA+ELKPELL+ I   +    
Sbjct: 170 YLNFVQHIQNTVERLNKQTSNGK-TWSPHRVELALWTHYVASELKPELLDGIPGSTE--- 225

Query: 227 NNTNGNSTTHVNGTNQALDTCSDESNLEPATQNNKPDESTVPAASSLPSEPEDTSSLQSL 286
              NGNS    NG  +A +  SD+SN E A  N K   S  PAA        D +S+ + 
Sbjct: 226 ---NGNSHPPSNG--EATEP-SDDSNQEVAV-NGKELGSIDPAAI-------DENSMTTS 271

Query: 287 PSEKSLDDGS--IGNNHTDDVTNDSVMTLGAESDTNTNDLPDPSTPTNNPPAPSQVEMDG 344
            +E S+D  +  I      + TNDS+        TN ND       +NN P P+  E D 
Sbjct: 272 FTEDSMDKPATPITAAVASEDTNDSLA-------TNDND------DSNNTPRPTDSE-DT 317

Query: 345 ADDNASAEPPLKKTK 359
            D     EPP KK+K
Sbjct: 318 EDSQDVQEPPTKKSK 332

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242017398|ref|XP_002429176.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212514054|gb|EEB16438.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 157/238 (65%), Positives = 176/238 (73%), Gaps = 17/238 (7%)

Query: 54  WYQNELPKKIKARGKDAHLNHEELVQLMKWKQT-------LNYLVKVNTPRAVMMETKKA 106
           WYQNELP KIK RGKDAHLNHEELVQLMKWKQ        LNYLVKVNTPRAVM ETKKA
Sbjct: 50  WYQNELPMKIKQRGKDAHLNHEELVQLMKWKQCRGKAYPQLNYLVKVNTPRAVMAETKKA 109

Query: 107 FKKLPNLELALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIEGIDYTTKE 166
           F+KLPNLE A++ALSNLKGVGTT+ASALLAAA PE APFMADECLMAIPEIEGIDYTTKE
Sbjct: 110 FRKLPNLEQAITALSNLKGVGTTMASALLAAAAPETAPFMADECLMAIPEIEGIDYTTKE 169

Query: 167 YLKFVNFINNTVERLNKESKNGTGTWNAHQVELALWTHYVAAELKPELLEDIRSLSSNNT 226
           YL FV  I +T ERLNKES NG GTWN HQVELALWTH+VA EL P+LL  I S      
Sbjct: 170 YLNFVQHIQSTAERLNKESNNGHGTWNPHQVELALWTHFVANELDPDLLNAIPS------ 223

Query: 227 NNTNGNST-THVNG-TNQALDTCSDESNLEPATQNNKPDESTVPAASSLPSEPEDTSS 282
              NG S+ TH NG    A +  +D S+ E + +  K +E T  + +S  S   D+++
Sbjct: 224 --ANGKSSVTHQNGEVKNASNNENDHSDNESSIEAGKNEEETNDSLASGTSATNDSTT 279

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48098060|ref|XP_393966.1| PREDICTED: hypothetical protein LOC410487 [Apis mellifera]

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 181/315 (57%), Positives = 210/315 (66%), Gaps = 40/315 (12%)

Query: 54  WYQNELPKKIKARGKDAHLNHEELVQLMKWKQ-------TLNYLVKVNTPRAVMMETKKA 106
           WYQNELPKKIK+RGKDAHLNHEELVQ MKWKQ        L+YLVKVNTPRAVM ETKKA
Sbjct: 50  WYQNELPKKIKSRGKDAHLNHEELVQTMKWKQIRGKFYPQLSYLVKVNTPRAVMAETKKA 109

Query: 107 FKKLPNLELALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIEGIDYTTKE 166
           FKKLPNLE A++ALSNLKGVGTT+ASALLAAA+PE APFMADECLMAIPEIEGIDYTTKE
Sbjct: 110 FKKLPNLEQAITALSNLKGVGTTMASALLAAASPENAPFMADECLMAIPEIEGIDYTTKE 169

Query: 167 YLKFVNFINNTVERLNKESKNGTGTWNAHQVELALWTHYVAAELKPELLEDIRSLSSNNT 226
           YL FV  I NTVERLNK++ NG  TW+ H+VELALWTHYVA+ELKPELL+ I        
Sbjct: 170 YLNFVQHIQNTVERLNKQTSNGK-TWSPHRVELALWTHYVASELKPELLDGIPG------ 222

Query: 227 NNTNGNSTTHVNGTNQALDTCSDESNLEPATQNNKPDESTVPAASSLPSEPEDTSSLQSL 286
           +  NGNS    NG  +A +  SD+SN E A  N K      PAA        D +S+ + 
Sbjct: 223 STENGNSHPPSNG--EATEP-SDDSNQE-AALNGKELGGIDPAAI-------DENSMTTS 271

Query: 287 PSEKSLDDGS--IGNNHTDDVTNDSVMTLGAESDTNTNDLPDPSTPTNNPPAPSQVEMDG 344
            +E S+D  +  I      + TNDS+ T   ++D+N              P P+  E D 
Sbjct: 272 FTEDSMDKPATPITAAVASEDTNDSLATNDNDNDSNNT------------PRPTDSE-DT 318

Query: 345 ADDNASAEPPLKKTK 359
            D     EPP KK+K
Sbjct: 319 EDSQDVQEPPTKKSK 333

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	436
FB|FBgn0030328	550	Amun "Amun" [Drosophila melano	0.378	0.3	0.610	4.2e-53
UNIPROTKB|F1RG53	232	LOC100524737 "Uncharacterized	0.371	0.698	0.319	6.3e-21
ZFIN|ZDB-GENE-050320-25	238	zgc:112496 "zgc:112496" [Danio	0.371	0.680	0.319	5.1e-19
TAIR|locus:2082224	209	AT3G12210 [Arabidopsis thalian	0.350	0.732	0.284	5.3e-12

FB|FBgn0030328 Amun "Amun" [Drosophila melanogaster (taxid:7227)]

 Score = 528 (190.9 bits), Expect = 4.2e-53, Sum P(2) = 4.2e-53
 Identities = 105/172 (61%), Positives = 120/172 (69%)

Query:    54 WYQNELPKKIKARGKDAHLNHEELVQLMKWKQT-------LNYLVKVNTPRAVMMETKKA 106
             WYQNELPK IKARGKDAH+ ++ELVQ MKWKQ+       L+YLVKVNTPRAV+ ETKKA
Sbjct:    50 WYQNELPKLIKARGKDAHMVYDELVQSMKWKQSRGKFYPQLSYLVKVNTPRAVIQETKKA 109

Query:   107 FKKXXXXXXXXXXXXXXKGVGXXXXXXXXXXXXPEVAPFMADECLMAIPEIEGIDYTTKE 166
             F+K              KGVG            P+ APFMADECLMAIPEIEGIDYTTKE
Sbjct:   110 FRKLPNLEQAITALSNLKGVGTTMASALLAAAAPDSAPFMADECLMAIPEIEGIDYTTKE 169

Query:   167 YLKFVNFINNTVERLNKESKNGTGTWNAHQVELALWTHYVAAELKPELLEDI 218
             YL FVN I  TVERLN E    T  W+ H+VELALW+HYVA +L PE+L+D+
Sbjct:   170 YLNFVNHIQATVERLNAEVGGDTPHWSPHRVELALWSHYVANDLSPEMLDDM 221

GO:0035220 "wing disc development" evidence=IGI

GO:0048749 "compound eye development" evidence=IGI

GO:0005634 "nucleus" evidence=IDA

GO:0022416 "chaeta development" evidence=IMP

UNIPROTKB|F1RG53 LOC100524737 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 55/172 (31%), Positives = 82/172 (47%)

Query:    54 WYQNELPKKIKARGKDAHLNHEELVQLMKWKQT-------LNYLVKVNTPRAVMMETKKA 106
             WY+  LP  I+ R ++ H+  EEL QL+ WK         L+ LV  N P  V+  +  A
Sbjct:    43 WYREALPAAIEGR-EEKHVTREELGQLLAWKLARGRFRPRLHQLVSANAPELVVQHSAAA 101

Query:   107 FKKXXXXXXXXXXXXXXKGVGXXXXXXXXXXXXPEVAPFMADECLMAIPEIEGIDYTTKE 166
             F                +GVG            PEVA FM++E + A+P +  + YT K 
Sbjct:   102 FPLLPDMHAAVTELRALRGVGPATASAVLAAGAPEVAAFMSEEAVAAVPGLPALQYTLKH 161

Query:   167 YLKFVNFINNTVERLNKESKNGTGTWNAHQVELALWTHYVAAELKPELLEDI 218
             YL +++ +      L+  S   +G W  H+VE ALWT  +  +L P+LL D+
Sbjct:   162 YLLYLSRVQERATALSHGS--ASGLWTPHRVETALWTWAIGQKLCPDLLPDL 211

GO:0006281 "DNA repair" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

ZFIN|ZDB-GENE-050320-25 zgc:112496 "zgc:112496" [Danio rerio (taxid:7955)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 55/172 (31%), Positives = 79/172 (45%)

Query:    54 WYQNELPKKIKARGKDAHLNHEELVQLMKWKQT-------LNYLVKVNTPRAVMMETKKA 106
             W+Q +LP  I AR  +  L H ELV++M+WK T       L  L+  N   AV   + KA
Sbjct:    43 WFQEDLPAAITAR-PERFLTHAELVKIMEWKLTKGKFRPRLQQLIGSNNEEAVQSSSSKA 101

Query:   107 FKKXXXXXXXXXXXXXXKGVGXXXXXXXXXXXXPEVAPFMADECLMAIPEIEGIDYTTKE 166
             F                KGVG            P+   FMADE + +I E+  ++YT K 
Sbjct:   102 FSLLPDVQAAIKELCKLKGVGSATASAVLVAGAPDKVAFMADEAVESIAELRPVEYTDKH 161

Query:   167 YLKFVNFINNTVERLNKESKNGTGTWNAHQVELALWTHYVAAELKPELLEDI 218
             Y  ++  +      LNK   +    W  H+VE  LWT  VA +++P LL+ +
Sbjct:   162 YALYLQKMLWKTSELNKV--DAQQDWTPHRVEQCLWTWTVANQIQPSLLQGV 211

GO:0003677 "DNA binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

TAIR|locus:2082224 AT3G12210 [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 5.3e-12, P = 5.3e-12
 Identities = 48/169 (28%), Positives = 77/169 (45%)

Query:    54 WYQNELPKKIKARGKDAHLNHEELVQLMKWK--------QTLNYLVKVNTPRAVMMETKK 105
             +Y+ +LP  +  R  + +L   EL QLMKWK        + L+++  ++    V   ++K
Sbjct:    38 FYRIKLPCLLHDRDPNPYLTTSELSQLMKWKLSRGKWRPRLLDFVSSLDDS-VVKSASEK 96

Query:   106 AFKKXXXXXXXXXXXXXXKGVGXXXXXXXXXXXXPEVAPFMADECLMAIPEIEGIDYTTK 165
             AFK               KGVG            P++APFM+DE  M +      DY+ K
Sbjct:    97 AFKSLPDISKAVKELTVLKGVGAATASAVLAAYAPDIAPFMSDEA-MEVALGNSKDYSLK 155

Query:   166 EYLKFVNFINNTVERLNKESKNGTGTWNA-HQVELALWTHYVAAELKPE 213
             +YL F   + +  + L  +     G W+    +E ALW+  V A+ +PE
Sbjct:   156 QYLLFATKLQDKAKELKLK-----GEWDGPSDIERALWSCTVRAKSQPE 199


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.307   0.125   0.352    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      436       319   0.00084  116 3  11 23  0.39    35
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  225 KB (2123 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.03u 0.09s 27.12t   Elapsed:  00:00:06
  Total cpu time:  27.03u 0.09s 27.12t   Elapsed:  00:00:06
  Start:  Thu Aug 15 16:08:28 2013   End:  Thu Aug 15 16:08:34 2013

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006281 "DNA repair" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	436
pfam05110	1154	pfam05110, AF-4, AF-4 proto-oncoprotein	2e-05
pfam11337	85	pfam11337, DUF3139, Protein of unknown function (D	1e-04
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	3e-04
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	0.003
pfam01529	167	pfam01529, zf-DHHC, DHHC palmitoyltransferase	0.003
pfam06656	785	pfam06656, Tenui_PVC2, Tenuivirus PVC2 protein	0.003
COG0762	96	COG0762, COG0762, Predicted integral membrane prot	0.003
pfam00957	89	pfam00957, Synaptobrevin, Synaptobrevin	0.003
pfam02118	275	pfam02118, Srg, Srg family chemoreceptor	0.004
pfam13630	72	pfam13630, SdpI, SdpI/YhfL protein family	0.004

>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 39/180 (21%), Positives = 73/180 (40%), Gaps = 25/180 (13%)

Query: 248 SDESNLEPATQNNKPDESTVPAASSLPSEPEDTSSLQSLPSEKSLDDGSIGNNHTDDVTN 307
           S++S+ E AT+      +   A SS P     +S   S  S      GS      D  + 
Sbjct: 365 SEDSDEEQATEKPPSRNTPPSAPSSNPEPAASSSGSSSSSSGSESSSGS------DSESE 418

Query: 308 DSVMTLGAESDTNTNDLPDPSTPTNNPPAPSQVEMDG-----------ADDNASAEPPLK 356
            S       SD+  N+ P  ++P   PP+ ++ ++D              ++ S+ PP+K
Sbjct: 419 SS------SSDSEENEPPRTASPEPEPPSTNKWQLDNWLNKVNPHKVSPAESVSSNPPIK 472

Query: 357 KTKLSEPENEVANNGESSEAAKPEKNGASEPESVSE--SEAPVTKEGEQKVPVEPTAPVP 414
           +    E + + + +    E+ +P    +S+ +       + P +  G+QK P +  AP  
Sbjct: 473 QPMEKEGKVKSSGSQYHPESKEPPPKSSSKEKRRPRTAQKGPESGRGKQKSPAQSEAPPQ 532

This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental retardation syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental retardation. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila. Length = 1154

>gnl|CDD|221085 pfam11337, DUF3139, Protein of unknown function (DUF3139)

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 17 IIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWY 55
           +I I+II+I+I + + I++    N+   H  +  I WY
Sbjct: 5  KVIFIVIILIVISLFVGIVLFFAGNQYQRHKALKAIDWY 43

This family of proteins with unknown function appears to be restricted to Firmicutes. Length = 85

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 27/153 (17%), Positives = 44/153 (28%), Gaps = 10/153 (6%)

Query: 274 PSEPEDTSSLQSLPSEKSLDDGSIGN---NHTDDVTNDSVMTLGAESDTNTNDLPDPSTP 330
             E E      +  +  +   G +G    N  DDV       +   +D    +       
Sbjct: 295 ALEREPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESVVQVAD 354

Query: 331 TNNPPAPSQVEMDGADDNASAEPPLKKTKLSEPENEVANNGE---SSEAAKPEKNGASEP 387
            +    P+  E   AD        L     +  + +            A   E +  +EP
Sbjct: 355 RDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEP 414

Query: 388 ESVSESEAPVTKEGEQKVPVEPTAPVPVESKTE 420
           E V E  AP+    +   P E     P +   E
Sbjct: 415 E-VPEKAAPIPDPAK---PDELAVAGPGDDPAE 443

Length = 460

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 39.6 bits (92), Expect = 0.003
 Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 9/117 (7%)

Query: 314 GAESDTNTNDLPDPSTPTNNPPAPSQVEMDGADDNA--SAEPPLKKTKLSEPENEVANNG 371
              S  +     +P+ P ++ P+P+Q        +   S E P   T   EP++      
Sbjct: 136 PPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQS 195

Query: 372 ESSEAAKPEKNGASEP-----ESVSESEAPVTKEG--EQKVPVEPTAPVPVESKTET 421
           E+  ++ P ++   EP      +  ++ +P T++    +  P EP    P      +
Sbjct: 196 ETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFPGHRS 252

Length = 413

>gnl|CDD|216554 pfam01529, zf-DHHC, DHHC palmitoyltransferase

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 7/47 (14%), Positives = 23/47 (48%)

Query: 9   HKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWY 55
           HK+ L F++ + + +I+++++    ++ +I    +     +S     
Sbjct: 84  HKYFLLFLLYLTLYLILLLVLSFYYLVYLIRNIELFFFLILSLFSSI 130

This family includes the well known DHHC zinc binding domain as well as three of the four conserved transmembrane regions found in this family of palmitoyltransferase enzymes. Length = 167

>gnl|CDD|148326 pfam06656, Tenui_PVC2, Tenuivirus PVC2 protein

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 1   MIQNKKHYH--KHHLWFIIIIIIIIIIIIIIIIIIIIIIIII 40
            I   K+Y   K + + +  II+++III+    I II I+I 
Sbjct: 209 FIMRIKNYECSKTYRYSLYSIILLLIIIVCFTGITIINILIF 250

This family consists of several Tenuivirus PVC2 proteins from Rice grassy stunt virus, Maize stripe virus and Rice hoja blanca virus. The function of this family is unknown. Length = 785

>gnl|CDD|223833 COG0762, COG0762, Predicted integral membrane protein [Function unknown]

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 7/38 (18%), Positives = 24/38 (63%)

Query: 16 IIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIG 53
          +++ +++++I+I + I +++I  +++  P     + IG
Sbjct: 7  LLLSLLVLLILIGVYIFLLLIRALLSWFPPAGETNPIG 44

Length = 96

>gnl|CDD|201526 pfam00957, Synaptobrevin, Synaptobrevin

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 11/32 (34%), Positives = 23/32 (71%)

Query: 10 KHHLWFIIIIIIIIIIIIIIIIIIIIIIIIIN 41
          K  +W+  + + II+ ++++I+I+IIII+I  
Sbjct: 58 KRKMWWKNMKLKIILGLVVLILILIIIIVICG 89

Length = 89

>gnl|CDD|216883 pfam02118, Srg, Srg family chemoreceptor

 Score = 38.7 bits (91), Expect = 0.004
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 8   YHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSN 48
           Y K   W    +  +I  I+I++  II  I+   ++   S 
Sbjct: 160 YEKAVPWASTSLFQLIYFILILVFTIITSIVTSYKLAKLSK 200

Length = 275

>gnl|CDD|205807 pfam13630, SdpI, SdpI/YhfL protein family

 Score = 35.6 bits (83), Expect = 0.004
 Identities = 7/28 (25%), Positives = 22/28 (78%)

Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIII 40
          L+ I  +I++++ ++I+ I+ +I++++I
Sbjct: 33 LFIIGGLILLLLGLLILDILFLILLLLI 60

This family of proteins includes the SdpI and YhfL proteins from B. subtilis. The SdpI protein is a multipass integral membrane protein that protects toxin-producing cells from being killed. Killing is mediated by the exported toxic protein SdpC an extracellular protein that induces the synthesis of an immunity protein. Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	436
PF00633	30	HHH: Helix-hairpin-helix motif; InterPro: IPR00044	96.83
COG0177	211	Nth Predicted EndoIII-related endonuclease [DNA re	96.23
PRK01229	208	N-glycosylase/DNA lyase; Provisional	95.26
cd00056	158	ENDO3c endonuclease III; includes endonuclease III	94.51
PF15102	146	TMEM154: TMEM154 protein family	94.46
PHA03240	258	envelope glycoprotein M; Provisional	94.4
TIGR01084	275	mutY A/G-specific adenine glycosylase. This equiva	92.97
PRK13913	218	3-methyladenine DNA glycosylase; Provisional	92.78
PRK10702	211	endonuclease III; Provisional	92.59
smart00478	149	ENDO3c endonuclease III. includes endonuclease III	91.97
COG0122	285	AlkA 3-methyladenine DNA glycosylase/8-oxoguanine	91.89
PRK02515	132	psbU photosystem II complex extrinsic protein prec	91.09
COG1194	342	MutY A/G-specific DNA glycosylase [DNA replication	90.89
PRK04778	569	septation ring formation regulator EzrA; Provision	90.89
TIGR01083	191	nth endonuclease III. This equivalog model identif	90.85
TIGR00588	310	ogg 8-oxoguanine DNA-glycosylase (ogg). All protei	90.62
PRK10880	350	adenine DNA glycosylase; Provisional	89.93
PRK13910	289	DNA glycosylase MutY; Provisional	89.72
PRK10308	283	3-methyl-adenine DNA glycosylase II; Provisional	89.54
TIGR03252	177	uncharacterized HhH-GPD family protein. This model	88.68
PF02371	87	Transposase_20: Transposase IS116/IS110/IS902 fami	87.69
TIGR01259	120	comE comEA protein. This model describes the ComEA	84.35
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	83.06
smart00278	26	HhH1 Helix-hairpin-helix DNA-binding motif class 1	81.48
PF05297	381	Herpes_LMP1: Herpesvirus latent membrane protein 1	80.65

>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]

Probab=96.83  E-value=0.00093  Score=46.32  Aligned_cols=24  Identities=29%  Similarity=0.497  Sum_probs=20.1

Q ss_pred             HHHHHHhhcCCCCcHHHHHHHHhh
Q psy4731         114 ELALSALSNLKGVGTTLASALLAA  137 (436)
Q Consensus       114 ~aAL~~LTkLKGVGPATASAILAa  137 (436)
                      .+.++.|++|+||||.||.+||+.
T Consensus         7 pas~eeL~~lpGIG~~tA~~I~~~   30 (30)
T PF00633_consen    7 PASIEELMKLPGIGPKTANAILSF   30 (30)
T ss_dssp             TSSHHHHHTSTT-SHHHHHHHHHH
T ss_pred             CCCHHHHHhCCCcCHHHHHHHHhC
Confidence            346889999999999999999973

The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....

>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]

Probab=96.23  E-value=0.013  Score=56.29  Aligned_cols=61  Identities=26%  Similarity=0.258  Sum_probs=45.9

Q ss_pred             CHHHHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHHHHHhcCCCCCCccCHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q psy4731         112 NLELALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIEGIDYTTKEYLKFVNFINNTVERLNKESKNGTGT  191 (436)
Q Consensus       112 DV~aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDEAf~~lpg~~kIKYTlKEYlell~~vr~LakRLn~e~~~g~~~  191 (436)
                      ++...++.|.+|+|||+-||..+|+.+.  ..|.|.                      .-.++.++++|++-.     ..
T Consensus       103 ~vP~~~~eL~~LPGVGrKTAnvVL~~a~--g~p~i~----------------------VDTHV~Rvs~R~gl~-----~~  153 (211)
T COG0177         103 EVPDTREELLSLPGVGRKTANVVLSFAF--GIPAIA----------------------VDTHVHRVSNRLGLV-----PG  153 (211)
T ss_pred             CCCchHHHHHhCCCcchHHHHHHHHhhc--CCCccc----------------------ccchHHHHHHHhCCC-----CC
Confidence            4678999999999999999999999975  223221                      114778888888543     35


Q ss_pred             cChhHHHHHH
Q psy4731         192 WNAHQVELAL  201 (436)
Q Consensus       192 wT~~dVEKAL  201 (436)
                      .++..+|+.|
T Consensus       154 ~~p~~ve~~L  163 (211)
T COG0177         154 KTPEEVEEAL  163 (211)
T ss_pred             CCHHHHHHHH
Confidence            7888888875

>PRK01229 N-glycosylase/DNA lyase; Provisional

Probab=95.26  E-value=0.054  Score=51.85  Aligned_cols=81  Identities=23%  Similarity=0.347  Sum_probs=58.5

Q ss_pred             CHHHHHHHhh-cCCCCcHHHHHHHH-hhcCCCCCccccHHHHHhc---CCC-CCC--ccCHHHHHHHHHHHHHHHHHHhh
Q psy4731         112 NLELALSALS-NLKGVGTTLASALL-AAATPEVAPFMADECLMAI---PEI-EGI--DYTTKEYLKFVNFINNTVERLNK  183 (436)
Q Consensus       112 DV~aAL~~LT-kLKGVGPATASAIL-Aa~~Pe~vPFFSDEAf~~l---pg~-~kI--KYTlKEYlell~~vr~LakRLn~  183 (436)
                      ++..+.+.|. +||||||=||+.|| .++.  ..-|.-|--..-+   -|. ...  .-|.+.|.+.-..+++.++.+  
T Consensus       112 ~~~~~R~~Ll~~lpGIG~KTAd~vL~~~~~--~~~~iVDtHv~Ri~~RlG~~~~~~~~lt~~~y~~~E~~l~~~~~~~--  187 (208)
T PRK01229        112 DQFEAREFLVKNIKGIGYKEASHFLRNVGY--EDLAILDRHILRFLKRYGLIEEIPKTLSKKRYLEIEEILREIAEEL--  187 (208)
T ss_pred             CchHHHHHHHHcCCCCcHHHHHHHHHHccC--CCeeeeeHHHHHHHHHhCCCcccccccCcCCHHHHHHHHHHHHHHc--
Confidence            5678999999 99999999999999 4544  2335567644322   121 111  345689999999999999986  


Q ss_pred             hccCCCCCcChhHHHHHHHH
Q psy4731         184 ESKNGTGTWNAHQVELALWT  203 (436)
Q Consensus       184 e~~~g~~~wT~~dVEKALWA  203 (436)
                             .+.+..+-..+|-
T Consensus       188 -------~~~~~~Ldl~~w~  200 (208)
T PRK01229        188 -------GISLGELDLYIWY  200 (208)
T ss_pred             -------CCCHHHHHHHHHH
Confidence                   4678888888875

>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases

Probab=94.51  E-value=0.21  Score=43.54  Aligned_cols=38  Identities=29%  Similarity=0.224  Sum_probs=28.4

Q ss_pred             HHHHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHHHH
Q psy4731         113 LELALSALSNLKGVGTTLASALLAAATPEVAPFMADECL  151 (436)
Q Consensus       113 V~aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDEAf  151 (436)
                      ...+.+.|++||||||-||+.+|..+.- .--|-.|-..
T Consensus        78 ~~~~~~~L~~l~GIG~~tA~~~l~~~~~-~~~~pvD~~v  115 (158)
T cd00056          78 DPDAREELLALPGVGRKTANVVLLFALG-PDAFPVDTHV  115 (158)
T ss_pred             CcccHHHHHcCCCCCHHHHHHHHHHHCC-CCCCccchhH
Confidence            3678999999999999999999987653 2233336533

>PF15102 TMEM154: TMEM154 protein family

Probab=94.46  E-value=0.011  Score=54.49  Aligned_cols=34  Identities=12%  Similarity=0.478  Sum_probs=15.4

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy4731           7 HYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPI   45 (436)
Q Consensus         7 ~~~~~~~~~~i~i~ii~~~ii~~i~~~~~~iiiin~ip~   45 (436)
                      .|+|   ++||+|+.|.+  .++|+++|++|+++.|...
T Consensus        54 q~ef---iLmIlIP~VLL--vlLLl~vV~lv~~~kRkr~   87 (146)
T PF15102_consen   54 QLEF---ILMILIPLVLL--VLLLLSVVCLVIYYKRKRT   87 (146)
T ss_pred             Ccce---EEEEeHHHHHH--HHHHHHHHHheeEEeeccc
Confidence            4555   34444443333  3334444455555566544

>PHA03240 envelope glycoprotein M; Provisional

Probab=94.40  E-value=0.019  Score=56.38  Aligned_cols=24  Identities=42%  Similarity=0.632  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHhccCCcccccchhhHH
Q psy4731          30 IIIIIIIIIIINRIPIHSNISNIGWYQ   56 (436)
Q Consensus        30 i~~~~~~iiiin~ip~~~L~eLD~Wry   56 (436)
                      ||||||||+++++|||+-+   |+|..
T Consensus       220 IIiIiIIIL~cfKiPQKl~---dKw~~  243 (258)
T PHA03240        220 IIIIIVIILFFFKIPQKLF---DKWDL  243 (258)
T ss_pred             HHHHHHHHHHHHhccHHHH---HHHhh
Confidence            4445667788999999654   56654

>TIGR01084 mutY A/G-specific adenine glycosylase

Probab=92.97  E-value=0.16  Score=50.11  Aligned_cols=36  Identities=31%  Similarity=0.408  Sum_probs=28.2

Q ss_pred             HHHHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHH
Q psy4731         113 LELALSALSNLKGVGTTLASALLAAATPEVAPFMADE  149 (436)
Q Consensus       113 V~aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDE  149 (436)
                      +...++.|++|+||||-||++||+.+.-...| +-|-
T Consensus       100 ~p~~~~~L~~LpGIG~~TA~~Il~~a~~~~~~-~vD~  135 (275)
T TIGR01084       100 FPQDFEDLAALPGVGRYTAGAILSFALNKPYP-ILDG  135 (275)
T ss_pred             CcHHHHHHHhCCCCCHHHHHHHHHHHCCCCCC-cchH
Confidence            34578999999999999999999998743344 4555

This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

>PRK13913 3-methyladenine DNA glycosylase; Provisional

Probab=92.78  E-value=0.54  Score=45.36  Aligned_cols=39  Identities=21%  Similarity=0.253  Sum_probs=30.6

Q ss_pred             HHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHHHHHhc
Q psy4731         115 LALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAI  154 (436)
Q Consensus       115 aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDEAf~~l  154 (436)
                      ...+.|.+||||||-||.+||..+. .+.-|.-|--..-+
T Consensus       118 ~~re~Ll~l~GIG~kTAd~iLlya~-~rp~fvVDty~~Rv  156 (218)
T PRK13913        118 VTREWLLDQKGIGKESADAILCYVC-AKEVMVVDKYSYLF  156 (218)
T ss_pred             hHHHHHHcCCCccHHHHHHHHHHHc-CCCccccchhHHHH
Confidence            4668899999999999999998876 34557778755443

>PRK10702 endonuclease III; Provisional

Probab=92.59  E-value=0.19  Score=47.80  Aligned_cols=36  Identities=28%  Similarity=0.306  Sum_probs=28.5

Q ss_pred             HHHHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHH
Q psy4731         113 LELALSALSNLKGVGTTLASALLAAATPEVAPFMADE  149 (436)
Q Consensus       113 V~aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDE  149 (436)
                      +..+.+.|.+|+||||-||.+||..+.- ..-|.-|-
T Consensus       104 ~p~~~~~Ll~lpGVG~ktA~~ill~a~~-~~~~~VDt  139 (211)
T PRK10702        104 VPEDRAALEALPGVGRKTANVVLNTAFG-WPTIAVDT  139 (211)
T ss_pred             CCchHHHHhcCCcccHHHHHHHHHHHcC-CCcccccc
Confidence            4578999999999999999999998863 33455554

>smart00478 ENDO3c endonuclease III

Probab=91.97  E-value=0.16  Score=43.93  Aligned_cols=35  Identities=31%  Similarity=0.425  Sum_probs=27.5

Q ss_pred             HHHHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHH
Q psy4731         113 LELALSALSNLKGVGTTLASALLAAATPEVAPFMADE  149 (436)
Q Consensus       113 V~aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDE  149 (436)
                      +....+.|++||||||-||+++|..+.-.  +||-.+
T Consensus        67 ~~~~~~~L~~l~GIG~~tA~~~l~~~~~~--~~~~~D  101 (149)
T smart00478       67 VPDDREELLKLPGVGRKTANAVLSFALGK--PFIPVD  101 (149)
T ss_pred             ccHHHHHHHcCCCCcHHHHHHHHHHHCCC--CCCccc
Confidence            44678899999999999999999988644  444433

includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases

>COG0122 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]

Probab=91.89  E-value=1.3  Score=44.15  Aligned_cols=71  Identities=23%  Similarity=0.151  Sum_probs=50.7

Q ss_pred             CcCHHHHHHHHHHhhh--hHHHHhhcCHHHHHHHHHHHHhhCc--------CHHHHHHHhhcCCCCcHHHHHHHHhhcC-
Q psy4731          71 HLNHEELVQLMKWKQT--LNYLVKVNTPRAVMMETKKAFKKLP--------NLELALSALSNLKGVGTTLASALLAAAT-  139 (436)
Q Consensus        71 ~LTKDELVkLMEWKLt--L~kLVkSN~e~~Ve~~TkkAF~~Lp--------DV~aAL~~LTkLKGVGPATASAILAa~~-  139 (436)
                      +.|-+.|..+=++-|+  .+..-|   .+.++.+++...+..+        +.+.+++.|++||||||-||-.+|-..- 
T Consensus       144 fptpe~l~~~~~~~l~~~g~s~~K---a~yi~~~A~~~~~g~~~~~~l~~~~~e~a~e~L~~i~GIG~WTAe~~llf~lg  220 (285)
T COG0122         144 FPTPEQLAAADEEALRRCGLSGRK---AEYIISLARAAAEGELDLSELKPLSDEEAIEELTALKGIGPWTAEMFLLFGLG  220 (285)
T ss_pred             CCCHHHHHhcCHHHHHHhCCcHHH---HHHHHHHHHHHHcCCccHHHhccCCHHHHHHHHHcCCCcCHHHHHHHHHHcCC
Confidence            6888888888888776  111112   3567777776665422        3578999999999999999999987653 


Q ss_pred             -CCCCc
Q psy4731         140 -PEVAP  144 (436)
Q Consensus       140 -Pe~vP  144 (436)
                       |+.+|
T Consensus       221 r~dvfP  226 (285)
T COG0122         221 RPDVFP  226 (285)
T ss_pred             CCCCCC
Confidence             55544

>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional

Probab=91.09  E-value=0.14  Score=46.73  Aligned_cols=50  Identities=20%  Similarity=0.319  Sum_probs=37.2

Q ss_pred             HHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHHHHHhcCCCCCC-ccCHHHHHH
Q psy4731         115 LALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIEGI-DYTTKEYLK  169 (436)
Q Consensus       115 aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDEAf~~lpg~~kI-KYTlKEYle  169 (436)
                      +..+.|..|+||||++|..|.     .+.||-|=|-+..++|.... +=.++.|+.
T Consensus        58 A~~~el~~lpGigP~~A~~IV-----~nGpf~sveDL~~V~GIgekqk~~l~k~~~  108 (132)
T PRK02515         58 SSVRAFRQFPGMYPTLAGKIV-----KNAPYDSVEDVLNLPGLSERQKELLEANLD  108 (132)
T ss_pred             cCHHHHHHCCCCCHHHHHHHH-----HCCCCCCHHHHHcCCCCCHHHHHHHHHhhc
Confidence            455678889999999999999     37899998888888885432 334444443

>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]

Probab=90.89  E-value=0.25  Score=50.94  Aligned_cols=37  Identities=27%  Similarity=0.328  Sum_probs=28.6

Q ss_pred             HHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHHHHH
Q psy4731         116 ALSALSNLKGVGTTLASALLAAATPEVAPFMADECLM  152 (436)
Q Consensus       116 AL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDEAf~  152 (436)
                      -.+.|.+|+||||.||+||||.+.-...|+..--+..
T Consensus       111 ~~~~l~~LpGiG~yTa~Ail~~a~~~~~~~lDgNV~R  147 (342)
T COG1194         111 DEEELAALPGVGPYTAGAILSFAFNQPEPVLDGNVKR  147 (342)
T ss_pred             CHHHHHhCCCCcHHHHHHHHHHHhCCCCceeecchhe
Confidence            3455667999999999999999987677766554444

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=90.89  E-value=0.16  Score=54.06  Aligned_cols=55  Identities=15%  Similarity=0.127  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHhccCCcccccchhhHHhhcch----hHhhcCCCCCcCHHHHHHHHHHhhh
Q psy4731          31 IIIIIIIIIINRIPIHSNISNIGWYQNELPK----KIKARGKDAHLNHEELVQLMKWKQT   86 (436)
Q Consensus        31 ~~~~~~iiiin~ip~~~L~eLD~WryeELP~----~Ik~R~k~~~LTKDELVkLMEWKLt   86 (436)
                      ||++++.+++.|--.+.+.+|+.|..+-.-.    -|..- +.-+||=+-+.+.=+|+-.
T Consensus        14 i~~~~~~~~~rr~~~~~i~~Le~~k~~l~~~pv~~el~kv-k~l~l~Ges~~~f~~w~~~   72 (569)
T PRK04778         14 IIAYLAGLILRKRNYKRIDELEERKQELENLPVNDELEKV-KKLNLTGQSEEKFEEWRQK   72 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-hcCCCCcccHHHHHHHHHH
Confidence            3333444777788888899999998853322    23222 3568888888888889886

>TIGR01083 nth endonuclease III

Probab=90.85  E-value=0.4  Score=44.11  Aligned_cols=38  Identities=24%  Similarity=0.261  Sum_probs=28.4

Q ss_pred             HHHHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHHHH
Q psy4731         113 LELALSALSNLKGVGTTLASALLAAATPEVAPFMADECL  151 (436)
Q Consensus       113 V~aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDEAf  151 (436)
                      +..+.+.|++||||||-||.+||..+.-. .-|.-|--.
T Consensus       101 ~~~~~~~L~~l~GIG~ktA~~ill~~~~~-~~~~vD~~v  138 (191)
T TIGR01083       101 VPEDREELVKLPGVGRKTANVVLNVAFGI-PAIAVDTHV  138 (191)
T ss_pred             CchHHHHHHhCCCCcHHHHHHHHHHHcCC-CccccchhH
Confidence            44578899999999999999999887532 225556533

This equivalog model identifes nth members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

>TIGR00588 ogg 8-oxoguanine DNA-glycosylase (ogg)

Probab=90.62  E-value=0.74  Score=45.93  Aligned_cols=63  Identities=24%  Similarity=0.284  Sum_probs=41.0

Q ss_pred             CHHHHHHHhhcCCCCcHHHHHHHHhhcC--CCCCccccHHHHHh-----cCCCCCC-c---cCHHHHHHHHHHHHH
Q psy4731         112 NLELALSALSNLKGVGTTLASALLAAAT--PEVAPFMADECLMA-----IPEIEGI-D---YTTKEYLKFVNFINN  176 (436)
Q Consensus       112 DV~aAL~~LTkLKGVGPATASAILAa~~--Pe~vPFFSDEAf~~-----lpg~~kI-K---YTlKEYlell~~vr~  176 (436)
                      +...+.+.|+.||||||-||.+||..+.  |+.+|  .|-...-     +....+. +   =+-+.|.++.+..++
T Consensus       214 ~~~~~~~~L~~l~GIG~~tAd~vll~~l~~~d~~P--vD~~v~r~~~r~y~~~~~~~~~~~~~~~~~~~i~~~~~~  287 (310)
T TIGR00588       214 SYEDAREALCELPGVGPKVADCICLMGLDKPQAVP--VDVHVWRIANRDYPWHPKTSRAKGPSPFARKELGNFFRS  287 (310)
T ss_pred             ChHHHHHHHHhCCCccHHHHHHHHHHhCCCCCcee--ecHHHHHHHHHHhcccccccccccCChhHHHHHHHHHHH
Confidence            4668999999999999999999997764  66666  3754332     2221122 1   245677666555444

All proteins in this family for which functions are known are 8-oxo-guanaine DNA glycosylases that function in base excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is distantly realted to the Nth-MutY superfamily.

>PRK10880 adenine DNA glycosylase; Provisional

Probab=89.93  E-value=0.25  Score=50.54  Aligned_cols=35  Identities=26%  Similarity=0.401  Sum_probs=28.3

Q ss_pred             HHHHHHHhhcCCCCcHHHHHHHHhhcCCCCCcccc-HH
Q psy4731         113 LELALSALSNLKGVGTTLASALLAAATPEVAPFMA-DE  149 (436)
Q Consensus       113 V~aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFS-DE  149 (436)
                      +....+.|.+|+||||-||.+||+.+.-.  ||+- |=
T Consensus       104 ~p~~~~~L~~LpGIG~~TA~aIl~~af~~--~~~iVD~  139 (350)
T PRK10880        104 FPETFEEVAALPGVGRSTAGAILSLSLGK--HFPILDG  139 (350)
T ss_pred             chhhHHHHhcCCCccHHHHHHHHHHHCCC--CeecccH
Confidence            45788999999999999999999988733  4544 54

>PRK13910 DNA glycosylase MutY; Provisional

Probab=89.72  E-value=0.26  Score=49.18  Aligned_cols=73  Identities=23%  Similarity=0.350  Sum_probs=42.7

Q ss_pred             CCcCHHHHHHHHHHhhhhHHHHhhcCHHHHHHHHHHHHhh-CcCHHHHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccH
Q psy4731          70 AHLNHEELVQLMKWKQTLNYLVKVNTPRAVMMETKKAFKK-LPNLELALSALSNLKGVGTTLASALLAAATPEVAPFMAD  148 (436)
Q Consensus        70 ~~LTKDELVkLMEWKLtL~kLVkSN~e~~Ve~~TkkAF~~-LpDV~aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSD  148 (436)
                      ...+.+||.++  |+=- =++-|   ...+.++++.-.+. .-.+....+.|.+|+||||-||.+||+.+.-.. -|.-|
T Consensus        29 a~a~~~el~~~--~~gl-Gyy~R---Ar~L~~~A~~i~~~~~g~~P~~~~~L~~LpGIG~kTA~aIl~~af~~~-~~~VD  101 (289)
T PRK13910         29 ANAPLEEVLLL--WRGL-GYYSR---AKNLKKSAEICVKEHHSQLPNDYQSLLKLPGIGAYTANAILCFGFREK-SACVD  101 (289)
T ss_pred             HCCCHHHHHHH--HHcC-CcHHH---HHHHHHHHHHHHHHhCCCCChhHHHHHhCCCCCHHHHHHHHHHHCCCC-cCccc
Confidence            35677888776  5432 11111   33444444432221 112234689999999999999999999987432 23455


Q ss_pred             H
Q psy4731         149 E  149 (436)
Q Consensus       149 E  149 (436)
                      -
T Consensus       102 ~  102 (289)
T PRK13910        102 A  102 (289)
T ss_pred             H
Confidence            4

>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional

Probab=89.54  E-value=0.38  Score=47.55  Aligned_cols=34  Identities=21%  Similarity=0.294  Sum_probs=27.9

Q ss_pred             cCHHHHHHHhhcCCCCcHHHHHHHHhhc--CCCCCc
Q psy4731         111 PNLELALSALSNLKGVGTTLASALLAAA--TPEVAP  144 (436)
Q Consensus       111 pDV~aAL~~LTkLKGVGPATASAILAa~--~Pe~vP  144 (436)
                      .+...+++.|+.||||||-||..||-.+  .|+.+|
T Consensus       200 ~~~~~~~~~L~~LpGIGpwTA~~vllr~lg~~D~fp  235 (283)
T PRK10308        200 GDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFL  235 (283)
T ss_pred             CCHHHHHHHHhcCCCcCHHHHHHHHHHhCCCCCCCC
Confidence            3567899999999999999999988654  576655

>TIGR03252 uncharacterized HhH-GPD family protein

Probab=88.68  E-value=0.37  Score=45.60  Aligned_cols=41  Identities=24%  Similarity=0.207  Sum_probs=30.7

Q ss_pred             cCHHHHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHHHHHh
Q psy4731         111 PNLELALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMA  153 (436)
Q Consensus       111 pDV~aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDEAf~~  153 (436)
                      |+-....+.|.+|+||||-||..||+...-+  =-.-||-|.-
T Consensus       108 p~t~~lre~Ll~LpGVG~KTAnvVL~~l~~~--~~~~~~~~~~  148 (177)
T TIGR03252       108 PDGKELLRRLKALPGFGKQKAKIFLALLGKQ--LGVTPEGWRE  148 (177)
T ss_pred             CCcHHHHHHHHcCCCCCHHHHHHHHHHHHHH--hCCCCcchHH
Confidence            4556668999999999999999999976522  1245677764

This model describes a small, well-conserved bacterial protein family. Its sequence largely consists of a domain, HhH-GPD, found in a variety of related base excision DNA repair enzymes (see pfam00730).

>PF02371 Transposase_20: Transposase IS116/IS110/IS902 family; InterPro: IPR003346 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA

Probab=87.69  E-value=0.47  Score=38.66  Aligned_cols=44  Identities=23%  Similarity=0.414  Sum_probs=32.0

Q ss_pred             HHhhcCCCCcHHHHHHHHhhcCCCCCccccHHHHHhcCCCCCCcc
Q psy4731         118 SALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIEGIDY  162 (436)
Q Consensus       118 ~~LTkLKGVGPATASAILAa~~Pe~vPFFSDEAf~~lpg~~kIKY  162 (436)
                      +.|+.++||||-||..||+.. .+---|=+...|..+.|..+..|
T Consensus         2 ~~l~sipGig~~~a~~llaei-gd~~rF~~~~~l~~~~Gl~P~~~   45 (87)
T PF02371_consen    2 ELLTSIPGIGPITAATLLAEI-GDISRFKSAKQLASYAGLAPRPY   45 (87)
T ss_pred             chhcCCCCccHHHHHHHHHHH-cCchhcccchhhhhccccccccc
Confidence            468899999999999999987 33335667777777655444333

This family includes transposases for IS116, IS110 and IS902. It is often found with the transposase IS111A/IS1328/IS1533 family (see IPR002525 from INTERPRO) [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>TIGR01259 comE comEA protein

Probab=84.35  E-value=0.76  Score=40.20  Aligned_cols=43  Identities=26%  Similarity=0.376  Sum_probs=35.1

Q ss_pred             HHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHHHHHhcCCCC
Q psy4731         115 LALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIE  158 (436)
Q Consensus       115 aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDEAf~~lpg~~  158 (436)
                      +....|..|+||||.+|..||.-.. ...+|-|-|-+..++|..
T Consensus        65 A~~~eL~~lpGIG~~~A~~Ii~~R~-~~g~f~s~eeL~~V~GIg  107 (120)
T TIGR01259        65 ASLEELQALPGIGPAKAKAIIEYRE-ENGAFKSVDDLTKVSGIG  107 (120)
T ss_pred             CCHHHHhcCCCCCHHHHHHHHHHHH-hcCCcCCHHHHHcCCCCC
Confidence            5667899999999999999998864 577898877777777643

This model describes the ComEA protein in bacteria. The com E locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA. Lesions in the loci has been variously described for the appearance of competence-related pheonotypes and impairment of competence, suggesting their intimate functional role in bacterial transformation.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=83.06  E-value=0.6  Score=49.95  Aligned_cols=57  Identities=16%  Similarity=0.142  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHhccCCcccccchhhHHhhcchhHhhc---CCCCCcCHHHHHHHHHHhhh
Q psy4731          30 IIIIIIIIIIINRIPIHSNISNIGWYQNELPKKIKAR---GKDAHLNHEELVQLMKWKQT   86 (436)
Q Consensus        30 i~~~~~~iiiin~ip~~~L~eLD~WryeELP~~Ik~R---~k~~~LTKDELVkLMEWKLt   86 (436)
                      +|+++++++++.|--...+.+|+.|+.+-.-.-+..+   -+.-+|+-+-+.+.=.|+-.
T Consensus         9 ~l~~~~~~~~~rk~~~k~i~~Le~~k~~l~~~pv~~el~kvk~l~l~Gqt~~~fe~w~~~   68 (560)
T PF06160_consen    9 VLIIYIIGYIYRKRYYKEIDELEERKNELMNLPVADELSKVKKLNLTGQTEEKFEEWRQK   68 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            3344445556677777889999999885332222221   13458898888888899887

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1

Probab=81.48  E-value=1.2  Score=29.42  Aligned_cols=19  Identities=32%  Similarity=0.536  Sum_probs=16.9

Q ss_pred             HhhcCCCCcHHHHHHHHhh
Q psy4731         119 ALSNLKGVGTTLASALLAA  137 (436)
Q Consensus       119 ~LTkLKGVGPATASAILAa  137 (436)
                      .|.+++|||+.+|..|+..
T Consensus         2 ~L~~i~GiG~k~A~~il~~   20 (26)
T smart00278        2 ELLKVPGIGPKTAEKILEA   20 (26)
T ss_pred             hhhhCCCCCHHHHHHHHHh
Confidence            4789999999999999974

>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4)

Probab=80.65  E-value=0.51  Score=48.50  Aligned_cols=8  Identities=13%  Similarity=0.447  Sum_probs=0.0

Q ss_pred             ccchhhHH
Q psy4731          49 ISNIGWYQ   56 (436)
Q Consensus        49 ~eLD~Wry   56 (436)
                      ..|--|+|
T Consensus       118 LaL~vW~Y  125 (381)
T PF05297_consen  118 LALGVWFY  125 (381)
T ss_dssp             --------
T ss_pred             HHHHHHHH
Confidence            34444555

LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	436
3fhg_A	207	Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel	97.59
3fhf_A	214	Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel	97.28
3n0u_A	219	Probable N-glycosylase/DNA lyase; structural genom	96.92
4e9f_A	161	Methyl-CPG-binding domain protein 4; HHH DNA glyco	94.24
3s6i_A	228	DNA-3-methyladenine glycosylase 1; DNA glycosylase	94.2
2h56_A	233	DNA-3-methyladenine glycosidase; 10174367, EC 3.2.	94.17
3i0w_A	290	8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-	94.12
2xhi_A	360	N-glycosylase/DNA lyase; lyase-DNA complex, lyase/	93.93
2yg9_A	225	DNA-3-methyladenine glycosidase II, putative; hydr	93.21
1mpg_A	282	ALKA, 3-methyladenine DNA glycosylase II; DNA repa	93.14
3n5n_X	287	A/G-specific adenine DNA glycosylase; alpha-helice	93.07
4b21_A	232	Probable DNA-3-methyladenine glycosylase 2; hydrol	93.03
2jhn_A	295	ALKA, 3-methyladenine DNA-glycosylase; DNA repair,	92.59
1kg2_A	225	A/G-specific adenine glycosylase; DNA repair, hydr	92.51
1pu6_A	218	3-methyladenine DNA glycosylase; helix-hairpin-hel	92.23
3arc_U	97	Photosystem II 12 kDa extrinsic protein; PSII, mem	91.19
1kea_A	221	Possible G-T mismatches repair enzyme; DNA repair,	90.67
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	89.55
2abk_A	211	Endonuclease III; DNA-repair, DNA glycosylase; 1.8	89.3
1s5l_U	134	Photosystem II 12 kDa extrinsic protein; photosynt	88.52
1orn_A	226	Endonuclease III; DNA repair, DNA glycosylase, [4F	88.28
2duy_A	75	Competence protein comea-related protein; helix-ha	85.66
2i5h_A	205	Hypothetical protein AF1531; PFAM:DUF655, PSI-2, s	82.89

>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}

Probab=97.59  E-value=0.00062  Score=61.88  Aligned_cols=83  Identities=23%  Similarity=0.341  Sum_probs=61.7

Q ss_pred             CHHHHHHHhhcCCCCcHHHHHHHHhh-cCCCCCccccHHHH-H---hc---CCCCCCccCHHHHHHHHHHHHHHHHHHhh
Q psy4731         112 NLELALSALSNLKGVGTTLASALLAA-ATPEVAPFMADECL-M---AI---PEIEGIDYTTKEYLKFVNFINNTVERLNK  183 (436)
Q Consensus       112 DV~aAL~~LTkLKGVGPATASAILAa-~~Pe~vPFFSDEAf-~---~l---pg~~kIKYTlKEYlell~~vr~LakRLn~  183 (436)
                      +...+.+.|++||||||-||++||.. +.++ + |.-|--. .   .+   ++......+.+.|.++...++..++.+  
T Consensus       111 ~~~~~~~~L~~lpGIG~kTA~~il~~~~~~~-~-~~vD~~v~Ri~~rlg~~~~~~~k~~~~k~y~~~~~~l~~~~~~~--  186 (207)
T 3fhg_A          111 DQQLARERLLNIKGIGMQEASHFLRNVGYFD-L-AIIDRHIIDFMRRIGAIGETNVKQLSKSLYISFENILKSIASNL--  186 (207)
T ss_dssp             CHHHHHHHHTTSTTCCHHHHHHHHHHTTCCS-S-CCCCHHHHHHHHHTTSSCCCCCSCCCHHHHHHHHHHHHHHHHHT--
T ss_pred             CHHHHHHHHHcCCCcCHHHHHHHHHHhCCCC-c-ceecHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHHHHHHHh--
Confidence            45689999999999999999999995 5532 2 2334422 2   22   221234668999999999999999885  


Q ss_pred             hccCCCCCcChhHHHHHHHHHH
Q psy4731         184 ESKNGTGTWNAHQVELALWTHY  205 (436)
Q Consensus       184 e~~~g~~~wT~~dVEKALWAa~  205 (436)
                             .+++..+..++|...
T Consensus       187 -------~~~~~~lDl~lw~~~  201 (207)
T 3fhg_A          187 -------NMSVGILDLFIWYKE  201 (207)
T ss_dssp             -------TSCHHHHHHHHHHHH
T ss_pred             -------CCCHHHHHHHHHHHH
Confidence                   588999999999764

>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*

Probab=97.28  E-value=0.0021  Score=59.67  Aligned_cols=89  Identities=20%  Similarity=0.316  Sum_probs=66.8

Q ss_pred             HHHhhCcCHHHHHHHhh-cCCCCcHHHHHHHHhhcCCCCCccc-cHHHHHh----c---CCCCCCccCHHHHHHHHHHHH
Q psy4731         105 KAFKKLPNLELALSALS-NLKGVGTTLASALLAAATPEVAPFM-ADECLMA----I---PEIEGIDYTTKEYLKFVNFIN  175 (436)
Q Consensus       105 kAF~~LpDV~aAL~~LT-kLKGVGPATASAILAa~~Pe~vPFF-SDEAf~~----l---pg~~kIKYTlKEYlell~~vr  175 (436)
                      +-|..+.++..+.+.|. +|+||||-||++||..+.  ..+|+ -|--..-    +   +. .+-..+-+.|.++-..++
T Consensus       111 ~~~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~g--~~~~~vVDthv~Ri~~RlG~~~~-~~k~lt~~~y~e~~~~l~  187 (214)
T 3fhf_A          111 DIVESFENEKVAREFLVRNIKGIGYKEASHFLRNVG--YDDVAIIDRHILRELYENNYIDE-IPKTLSRRKYLEIENILR  187 (214)
T ss_dssp             HHHHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHTT--CCSCCCCCHHHHHHHHHTTSSSS-CCSSCCHHHHHHHHHHHH
T ss_pred             HHhcccCCcHHHHHHHHHhCCCCCHHHHHHHHHHcC--CCCcccCcHHHHHHHHHcCCCCC-CCCcCCHHHHHHHHHHHH
Confidence            34444457889999999 999999999999998653  24555 6763332    2   22 234567899999999999


Q ss_pred             HHHHHHhhhccCCCCCcChhHHHHHHHHHH
Q psy4731         176 NTVERLNKESKNGTGTWNAHQVELALWTHY  205 (436)
Q Consensus       176 ~LakRLn~e~~~g~~~wT~~dVEKALWAa~  205 (436)
                      ..++++         .+++..+-..+|...
T Consensus       188 ~~g~~~---------g~~~g~lDl~lW~~~  208 (214)
T 3fhf_A          188 DIGEEV---------NLKLSELDLYIWYLR  208 (214)
T ss_dssp             HHHHHT---------TCCHHHHHHHHHHHH
T ss_pred             HHHHHH---------CCCHHHHHHHHHHHH
Confidence            999997         478899999999763

>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}

Probab=96.92  E-value=0.0053  Score=57.05  Aligned_cols=82  Identities=23%  Similarity=0.294  Sum_probs=61.8

Q ss_pred             cCHHHHHHHhh-cCCCCcHHHHHHHHhh-cCCCCCccccHH-HHHh------cCCCCCCccCHHHHHHHHHHHHHHHHHH
Q psy4731         111 PNLELALSALS-NLKGVGTTLASALLAA-ATPEVAPFMADE-CLMA------IPEIEGIDYTTKEYLKFVNFINNTVERL  181 (436)
Q Consensus       111 pDV~aAL~~LT-kLKGVGPATASAILAa-~~Pe~vPFFSDE-Af~~------lpg~~kIKYTlKEYlell~~vr~LakRL  181 (436)
                      .++..+.+.|+ +|+||||-||+.||.. +.++.  |.-|- +...      +++ .+...|-|.|+++-+.++++++++
T Consensus       122 ~~~~~~r~~L~~~l~GVG~kTA~~vL~~~g~~~~--~~VDthv~Ri~~rlg~~~~-~~k~~t~k~y~~ie~~~~~~a~~~  198 (219)
T 3n0u_A          122 GDPFQSREFLVRNAKGIGWKEASHFLRNTGVEDL--AILDKHVLRLMKRHGLIQE-IPKGWSKKRYLYVEEILRKVAEAF  198 (219)
T ss_dssp             SCHHHHHHHHHHHSTTCCHHHHHHHHHTTTCCSC--CCCCHHHHHHHHHTTSCSS-CCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCe--eeecHHHHHHHHHcCCCCc-CcCcCCHHHHHHHHHHHHHHHHHH
Confidence            35778999999 9999999999999975 33223  33454 3322      122 234678899999999999999997


Q ss_pred             hhhccCCCCCcChhHHHHHHHHH
Q psy4731         182 NKESKNGTGTWNAHQVELALWTH  204 (436)
Q Consensus       182 n~e~~~g~~~wT~~dVEKALWAa  204 (436)
                               .+++..+-..+|..
T Consensus       199 ---------g~~~~~ldl~lW~~  212 (219)
T 3n0u_A          199 ---------GESPGKFDLYLWYL  212 (219)
T ss_dssp             ---------TCCHHHHHHHHHHH
T ss_pred             ---------CCCHHHHHHHHHHH
Confidence                     47899999999875

>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A

Probab=94.24  E-value=0.026  Score=50.21  Aligned_cols=26  Identities=12%  Similarity=0.038  Sum_probs=22.1

Q ss_pred             HHHHHHhhcCCCCcHHHHHHHHhhcC
Q psy4731         114 ELALSALSNLKGVGTTLASALLAAAT  139 (436)
Q Consensus       114 ~aAL~~LTkLKGVGPATASAILAa~~  139 (436)
                      ....+.|.+|+||||-||.++++++.
T Consensus       100 p~~~~~L~~LpGVG~yTAdav~~F~~  125 (161)
T 4e9f_A          100 TKQWKYPIELHGIGKYGNDSYRIFCV  125 (161)
T ss_dssp             HSCCSSGGGSTTCCHHHHHHHHHHTS
T ss_pred             CCChhhhhcCCCchHHHHHHHHHHHC
Confidence            34567889999999999999998865

>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}

Probab=94.20  E-value=0.034  Score=51.47  Aligned_cols=32  Identities=28%  Similarity=0.420  Sum_probs=26.5

Q ss_pred             HHHHHHHhhcCCCCcHHHHHHHHhhc--CCCCCc
Q psy4731         113 LELALSALSNLKGVGTTLASALLAAA--TPEVAP  144 (436)
Q Consensus       113 V~aAL~~LTkLKGVGPATASAILAa~--~Pe~vP  144 (436)
                      ...+++.|+.||||||-||..||..+  .|+.+|
T Consensus       134 ~~e~~~~L~~l~GIG~~TA~~ill~~lg~pd~fp  167 (228)
T 3s6i_A          134 NEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMP  167 (228)
T ss_dssp             HHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCC
T ss_pred             HHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCEEe
Confidence            46789999999999999999999765  455555

>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}

Probab=94.17  E-value=0.081  Score=48.89  Aligned_cols=32  Identities=19%  Similarity=0.318  Sum_probs=26.3

Q ss_pred             HHHHHHHhhcCCCCcHHHHHHHHhhc--CCCCCc
Q psy4731         113 LELALSALSNLKGVGTTLASALLAAA--TPEVAP  144 (436)
Q Consensus       113 V~aAL~~LTkLKGVGPATASAILAa~--~Pe~vP  144 (436)
                      ...+++.|++|+||||-||.+||..+  .|+.+|
T Consensus       133 ~~~~~~~L~~lpGIG~kTA~~ill~alg~pd~~p  166 (233)
T 2h56_A          133 ATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLS  166 (233)
T ss_dssp             HHHHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCC
T ss_pred             HHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeee
Confidence            35799999999999999999999875  355444

>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A

Probab=94.12  E-value=0.035  Score=53.01  Aligned_cols=38  Identities=21%  Similarity=0.301  Sum_probs=31.4

Q ss_pred             CHHHHHHHhhcCCCCcHHHHHHHHhh--cCCCCCccccHHHH
Q psy4731         112 NLELALSALSNLKGVGTTLASALLAA--ATPEVAPFMADECL  151 (436)
Q Consensus       112 DV~aAL~~LTkLKGVGPATASAILAa--~~Pe~vPFFSDEAf  151 (436)
                      +...+.+.|++||||||-||..||..  ..|+.+|.  |=..
T Consensus       205 ~~~~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpv--D~~v  244 (290)
T 3i0w_A          205 NDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPV--DTWV  244 (290)
T ss_dssp             CHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCC--CHHH
T ss_pred             CHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCccee--cHHH
Confidence            46789999999999999999999865  46888885  7543

>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...

Probab=93.93  E-value=0.25  Score=48.73  Aligned_cols=61  Identities=26%  Similarity=0.325  Sum_probs=40.2

Q ss_pred             CHHHHHHHhhcCCCCcHHHHHHHHhhc--CCCCCccccHH----HHHh-c---CCCCC-CccCHHHHHHHHHHH
Q psy4731         112 NLELALSALSNLKGVGTTLASALLAAA--TPEVAPFMADE----CLMA-I---PEIEG-IDYTTKEYLKFVNFI  174 (436)
Q Consensus       112 DV~aAL~~LTkLKGVGPATASAILAa~--~Pe~vPFFSDE----Af~~-l---pg~~k-IKYTlKEYlell~~v  174 (436)
                      +...+++.|++|+||||-||..||..+  .|+.+|.  |-    .+.. +   ++... ...+.+.|.++...+
T Consensus       247 ~~~~~~~~L~~LpGIGp~TA~~ill~alg~pd~fpv--DthV~Ri~~r~~gl~~~~~~~k~~~~~~~~~l~~~~  318 (360)
T 2xhi_A          247 SYEEAHKALCILPGVGTCVADKICLMALDKPQAVPV--NVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFF  318 (360)
T ss_dssp             CHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCC--SHHHHHHHHHHHCCCCSSCSCSSCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCEEEe--cHHHHHHHHHHhCcccccccccCCChHHHHHHHHHH
Confidence            356899999999999999999999765  5766664  62    1111 1   22111 223567787776655

>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A

Probab=93.21  E-value=0.15  Score=46.94  Aligned_cols=33  Identities=33%  Similarity=0.429  Sum_probs=27.1

Q ss_pred             CHHHHHHHhhcCCCCcHHHHHHHHhhcC--CCCCc
Q psy4731         112 NLELALSALSNLKGVGTTLASALLAAAT--PEVAP  144 (436)
Q Consensus       112 DV~aAL~~LTkLKGVGPATASAILAa~~--Pe~vP  144 (436)
                      +...+++.|+.||||||-||..||....  |+.+|
T Consensus       140 ~~~e~~~~L~~l~GIG~~TA~~ill~~lg~~d~fp  174 (225)
T 2yg9_A          140 PDELVIAELVQLPGIGRWTAEMFLLFALARPDVFS  174 (225)
T ss_dssp             CHHHHHHHHHTSTTCCHHHHHHHHHHTSCCSCCCC
T ss_pred             CHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCeee
Confidence            4567899999999999999999998753  55545

>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*

Probab=93.14  E-value=0.15  Score=47.97  Aligned_cols=41  Identities=20%  Similarity=0.204  Sum_probs=30.8

Q ss_pred             cCHHHHHHHhhcCCCCcHHHHHHHHhhcC--CCCCccccHHHHH
Q psy4731         111 PNLELALSALSNLKGVGTTLASALLAAAT--PEVAPFMADECLM  152 (436)
Q Consensus       111 pDV~aAL~~LTkLKGVGPATASAILAa~~--Pe~vPFFSDEAf~  152 (436)
                      .+...+++.|++||||||-||..||..+.  |+.+| ..|=.+.
T Consensus       200 ~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~~d~~p-vdd~~~r  242 (282)
T 1mpg_A          200 GDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFL-PDDYLIK  242 (282)
T ss_dssp             SCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCC-TTCHHHH
T ss_pred             CCHHHHHHHHhcCCCcCHHHHHHHHHHhCCCCCcCc-cccHHHH
Confidence            36788999999999999999999998764  54443 3444433

>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}

Probab=93.07  E-value=0.15  Score=49.22  Aligned_cols=35  Identities=29%  Similarity=0.306  Sum_probs=26.4

Q ss_pred             HHHHhhc-CCCCcHHHHHHHHhhcCCCCCccccHHHH
Q psy4731         116 ALSALSN-LKGVGTTLASALLAAATPEVAPFMADECL  151 (436)
Q Consensus       116 AL~~LTk-LKGVGPATASAILAa~~Pe~vPFFSDEAf  151 (436)
                      .++.|.+ |+||||-||.+||..+.-. ..|.-|--.
T Consensus       126 ~~~~Ll~~LpGIG~kTA~~iL~~a~g~-p~~~VDt~V  161 (287)
T 3n5n_X          126 TAETLQQLLPGVGRYTAGAIASIAFGQ-ATGVVDGNV  161 (287)
T ss_dssp             SHHHHHHHSTTCCHHHHHHHHHHHSCC-CCCCCCHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHhcCC-CCccccHHH
Confidence            5788887 9999999999999987632 235556533

>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*

Probab=93.03  E-value=0.075  Score=49.46  Aligned_cols=32  Identities=22%  Similarity=0.221  Sum_probs=26.6

Q ss_pred             HHHHHHHhhcCCCCcHHHHHHHHhhcC--CCCCc
Q psy4731         113 LELALSALSNLKGVGTTLASALLAAAT--PEVAP  144 (436)
Q Consensus       113 V~aAL~~LTkLKGVGPATASAILAa~~--Pe~vP  144 (436)
                      ...+++.|+.||||||-||..||..+.  |+.+|
T Consensus       145 ~~~~~~~L~~l~GIG~~TA~~ill~alg~pd~fp  178 (232)
T 4b21_A          145 EEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMP  178 (232)
T ss_dssp             HHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCC
T ss_pred             HHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeee
Confidence            457899999999999999999998764  55555

>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A

Probab=92.59  E-value=0.12  Score=49.05  Aligned_cols=72  Identities=19%  Similarity=0.168  Sum_probs=44.1

Q ss_pred             CcCHHHHHHHHHHhhhhHHHHhhcCHHHHHHHHHH-HHh---hCcCHHHHHHHhhcCCCCcHHHHHHHHhhcC-CCCCc
Q psy4731          71 HLNHEELVQLMKWKQTLNYLVKVNTPRAVMMETKK-AFK---KLPNLELALSALSNLKGVGTTLASALLAAAT-PEVAP  144 (436)
Q Consensus        71 ~LTKDELVkLMEWKLtL~kLVkSN~e~~Ve~~Tkk-AF~---~LpDV~aAL~~LTkLKGVGPATASAILAa~~-Pe~vP  144 (436)
                      +.|-++|..+=.|.|+-.++-.. -...+.++++. -|.   .++ ...+.+.|++||||||-||..||..+. |+.+|
T Consensus       161 fPtp~~la~~~~~~Lr~~G~~~r-Ka~~i~~~A~~g~l~~l~~~~-~~e~~~~L~~lpGIG~~TA~~ill~~lg~d~fp  237 (295)
T 2jhn_A          161 FPTQEAILKAGVEGLRECGLSRR-KAELIVEIAKEENLEELKEWG-EEEAYEYLTSFKGIGRWTAELVLSIALGKNVFP  237 (295)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCCHH-HHHHHHHHHTCSSGGGGGGSC-HHHHHHHHHTSTTCCHHHHHHHHHHTTCCCCCC
T ss_pred             CCCHHHHHcCCHHHHHHcCCCHH-HHHHHHHHHHCCCHhhhhcCC-HHHHHHHHhcCCCcCHHHHHHHHHHccCCCccc
Confidence            67889998887777761111000 01223333222 122   233 367899999999999999999998643 54444

>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A

Probab=92.51  E-value=0.19  Score=45.98  Aligned_cols=34  Identities=24%  Similarity=0.303  Sum_probs=25.9

Q ss_pred             HHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHH
Q psy4731         115 LALSALSNLKGVGTTLASALLAAATPEVAPFMADE  149 (436)
Q Consensus       115 aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDE  149 (436)
                      .+++.|.+|+||||-||.+||..+.-. .-|.-|-
T Consensus       106 ~~~~~L~~lpGIG~~TA~~il~~a~~~-~~~~vD~  139 (225)
T 1kg2_A          106 ETFEEVAALPGVGRSTAGAILSLSLGK-HFPILDG  139 (225)
T ss_dssp             CSHHHHHTSTTCCHHHHHHHHHHHHCC-SCCCCCH
T ss_pred             HHHHHHhcCCCCcHHHHHHHHHHhCCC-CcceeCH
Confidence            368899999999999999999876422 2345665

>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*

Probab=92.23  E-value=0.12  Score=47.33  Aligned_cols=37  Identities=27%  Similarity=0.356  Sum_probs=28.1

Q ss_pred             HHHHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHHH
Q psy4731         113 LELALSALSNLKGVGTTLASALLAAATPEVAPFMADEC  150 (436)
Q Consensus       113 V~aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDEA  150 (436)
                      ...+.+.|++||||||-||.+||..+.-. ..|--|--
T Consensus       116 ~~~~~~~L~~lpGIG~kTA~~il~~a~~~-~~~~vD~~  152 (218)
T 1pu6_A          116 QEVTREWLLDQKGIGKESADAILCYACAK-EVMVVDKY  152 (218)
T ss_dssp             HHCCHHHHHTSTTCCHHHHHHHHHHTTCC-SCCCCCHH
T ss_pred             chHHHHHHHcCCCcCHHHHHHHHHHHCCC-CccccCHH
Confidence            45678899999999999999999976532 24445653

>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*

Probab=91.19  E-value=0.029  Score=46.76  Aligned_cols=40  Identities=25%  Similarity=0.429  Sum_probs=33.5

Q ss_pred             HHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHHHHHhcCCCCC
Q psy4731         115 LALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIEG  159 (436)
Q Consensus       115 aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDEAf~~lpg~~k  159 (436)
                      +..+.|+.|+||||++|..|+.     .-||-|=|-+.-++|...
T Consensus        23 As~~eL~~lpGIG~~~A~~IV~-----~GpF~s~edL~~V~Gig~   62 (97)
T 3arc_U           23 TNIAAFIQYRGLYPTLAKLIVK-----NAPYESVEDVLNIPGLTE   62 (97)
T ss_dssp             SCGGGGGGSTTCTTHHHHHHHH-----HCCCSSGGGGGGCTTCCH
T ss_pred             CCHHHHhHCCCCCHHHHHHHHH-----cCCCCCHHHHHhccCCCH
Confidence            4567899999999999999998     469999888887877543

>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2

Probab=90.67  E-value=0.14  Score=46.70  Aligned_cols=34  Identities=26%  Similarity=0.302  Sum_probs=26.0

Q ss_pred             HHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHH
Q psy4731         115 LALSALSNLKGVGTTLASALLAAATPEVAPFMADE  149 (436)
Q Consensus       115 aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDE  149 (436)
                      .+++.|.+|+||||-||.+||..+.-.. -|.-|-
T Consensus       112 ~~~~~L~~lpGIG~~TA~~il~~~~~~~-~~~vD~  145 (221)
T 1kea_A          112 RNRKAILDLPGVGKYTCAAVMCLAFGKK-AAMVDA  145 (221)
T ss_dssp             SCHHHHHTSTTCCHHHHHHHHHHTTCCC-CCCCCH
T ss_pred             HHHHHHHhCCCCcHHHHHHHHHHhcCCC-cceecH
Confidence            4678899999999999999999875322 344454

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=89.55  E-value=0.65  Score=45.03  Aligned_cols=34  Identities=29%  Similarity=0.217  Sum_probs=26.3

Q ss_pred             HHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHH
Q psy4731         115 LALSALSNLKGVGTTLASALLAAATPEVAPFMADE  149 (436)
Q Consensus       115 aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDE  149 (436)
                      .+++.|.+|+||||-||.+||..+.-.. -|.-|-
T Consensus       115 ~~~~~L~~l~GIG~~tA~~il~~~~~~~-~~~vD~  148 (369)
T 3fsp_A          115 DDPDEFSRLKGVGPYTVGAVLSLAYGVP-EPAVDG  148 (369)
T ss_dssp             CSHHHHHTSTTCCHHHHHHHHHHHHCCC-CCCCCH
T ss_pred             hHHHHHhcCCCcCHHHHHHHHHHHCCCC-cccccH
Confidence            4788899999999999999999875332 344454

>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1

Probab=89.30  E-value=0.15  Score=46.11  Aligned_cols=27  Identities=33%  Similarity=0.393  Sum_probs=23.0

Q ss_pred             HHHHHHHhhcCCCCcHHHHHHHHhhcC
Q psy4731         113 LELALSALSNLKGVGTTLASALLAAAT  139 (436)
Q Consensus       113 V~aAL~~LTkLKGVGPATASAILAa~~  139 (436)
                      +..+++.|.+||||||-||.+||..+.
T Consensus       104 ~~~~~~~L~~l~GIG~~tA~~il~~~~  130 (211)
T 2abk_A          104 VPEDRAALEALPGVGRKTANVVLNTAF  130 (211)
T ss_dssp             CCSCHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred             chHHHHHHHhCCCCChHHHHHHHHHHC
Confidence            345778899999999999999998763

>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}

Probab=88.52  E-value=0.13  Score=45.60  Aligned_cols=39  Identities=26%  Similarity=0.460  Sum_probs=32.3

Q ss_pred             HHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHHHHHhcCCCC
Q psy4731         115 LALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIE  158 (436)
Q Consensus       115 aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDEAf~~lpg~~  158 (436)
                      +..+.|+.|+||||++|.+|.     ++.||-|=|=++-++|..
T Consensus        60 A~~~eL~~LpGiGp~~A~~II-----~~GpF~svedL~~V~GIg   98 (134)
T 1s5l_U           60 TNIAAFIQYRGLYPTLAKLIV-----KNAPYESVEDVLNIPGLT   98 (134)
T ss_dssp             SCGGGGGGSTTCTHHHHHHHH-----HTCCCSSGGGGGGCTTCC
T ss_pred             cCHHHHHHCCCCCHHHHHHHH-----HcCCCCCHHHHHhCCCCC
Confidence            466789999999999999999     367999977777787754

>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*

Probab=88.28  E-value=0.23  Score=45.71  Aligned_cols=26  Identities=27%  Similarity=0.331  Sum_probs=22.6

Q ss_pred             HHHHHHhhcCCCCcHHHHHHHHhhcC
Q psy4731         114 ELALSALSNLKGVGTTLASALLAAAT  139 (436)
Q Consensus       114 ~aAL~~LTkLKGVGPATASAILAa~~  139 (436)
                      ..+++.|.+|+||||-||.+||..+.
T Consensus       109 p~~~~~L~~lpGIG~~TA~~il~~a~  134 (226)
T 1orn_A          109 PRDRDELMKLPGVGRKTANVVVSVAF  134 (226)
T ss_dssp             CSCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCccHHHHHHHHHHHC
Confidence            34788999999999999999998753

>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7

Probab=85.66  E-value=0.42  Score=36.46  Aligned_cols=38  Identities=29%  Similarity=0.507  Sum_probs=30.0

Q ss_pred             HHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHHHHHhcCCCC
Q psy4731         116 ALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIE  158 (436)
Q Consensus       116 AL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDEAf~~lpg~~  158 (436)
                      ....|..++||||.+|..|+...     +|-+-|-+..++|.+
T Consensus        25 ~~~~L~~ipGIG~~~A~~Il~~r-----~~~s~~eL~~v~Gig   62 (75)
T 2duy_A           25 SLEELMALPGIGPVLARRIVEGR-----PYARVEDLLKVKGIG   62 (75)
T ss_dssp             CHHHHTTSTTCCHHHHHHHHHTC-----CCSSGGGGGGSTTCC
T ss_pred             CHHHHHhCCCCCHHHHHHHHHHc-----ccCCHHHHHhCCCCC
Confidence            45678899999999999999864     677766666677643

>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1

Probab=82.89  E-value=0.23  Score=46.70  Aligned_cols=79  Identities=22%  Similarity=0.293  Sum_probs=53.7

Q ss_pred             CcCHHHHHHHHHHhhh--hHHHHhhcCHHHHHHHHHHHHhhCcCHHHHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccH
Q psy4731          71 HLNHEELVQLMKWKQT--LNYLVKVNTPRAVMMETKKAFKKLPNLELALSALSNLKGVGTTLASALLAAATPEVAPFMAD  148 (436)
Q Consensus        71 ~LTKDELVkLMEWKLt--L~kLVkSN~e~~Ve~~TkkAF~~LpDV~aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSD  148 (436)
                      .|+-++|..--.--|.  +.+.|+.|....|. .    |..-..+.+.+..|..|+||||++|-+|+.-..  .-||-|=
T Consensus        88 ~i~y~~Lt~~Ak~~Lp~~v~~iV~~~E~~fv~-f----~n~a~pITA~~~eL~~LpGIG~k~A~~IIeyRe--~G~F~s~  160 (205)
T 2i5h_A           88 RLRYEDLTPAAKTELPYVIEHIIKQDEKKYVD-F----FNKADSITTRMHQLELLPGVGKKMMWAIIEERK--KRPFESF  160 (205)
T ss_dssp             ECCGGGSCHHHHHHHHHHHHHHHHTTHHHHHH-H----HC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHH--HSCCCSH
T ss_pred             eecHHHccHHHHhchHHHHHHHHHhchhhhhh-h----ccccCCccCCHHHHhcCCCcCHHHHHHHHHHHh--cCCCCCH
Confidence            4666666665444444  67777777555543 2    443334567788899999999999999998864  2799995


Q ss_pred             HHH-HhcCC
Q psy4731         149 ECL-MAIPE  156 (436)
Q Consensus       149 EAf-~~lpg  156 (436)
                      |-+ .-++|
T Consensus       161 eDL~~RV~G  169 (205)
T 2i5h_A          161 EDIAQRVKG  169 (205)
T ss_dssp             HHHHHHSTT
T ss_pred             HHHHHhcCC
Confidence            544 44776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	436
d2noha1	190	8-oxoguanine glycosylase {Human (Homo sapiens) [Ta	96.05
d1kg2a_	224	Catalytic domain of MutY {Escherichia coli [TaxId:	94.88
d1keaa_	217	Thymine-DNA glycosylase {Archaeon Methanobacterium	94.64
d1rrqa1	221	Catalytic domain of MutY {Bacillus stearothermophi	94.54
d1mpga1	183	3-Methyladenine DNA glycosylase II (gene alkA or a	94.03
d1orna_	214	Endonuclease III {Escherichia coli [TaxId: 562]}	93.16
d1pu6a_	217	3-Methyladenine DNA glycosylase III (MagIII) {Heli	92.97
d2axtu1	98	Photosystem II 12 kDa extrinsic protein PsbU {Ther	92.36
d2abka_	211	Endonuclease III {Escherichia coli [TaxId: 562]}	90.99
d1ngna_	144	Mismatch-specific thymine glycosylase domain of th	90.17
d2fmpa2	57	DNA polymerase beta {Human (Homo sapiens) [TaxId:	85.09
d1pzna1	61	DNA repair protein Rad51, N-terminal domain {Archa	81.7
d1cuka2	78	DNA helicase RuvA subunit, middle domain {Escheric	81.31

>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: DNA repair glycosylase, 2 C-terminal domains
domain: 8-oxoguanine glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0099  Score=50.79  Aligned_cols=63  Identities=27%  Similarity=0.372  Sum_probs=41.5

Q ss_pred             CHHHHHHHhhcCCCCcHHHHHHHHhhc--CCCCCccccHHHH-H----hc---CC-CCCCccCHHHHHHHHHHHHH
Q psy4731         112 NLELALSALSNLKGVGTTLASALLAAA--TPEVAPFMADECL-M----AI---PE-IEGIDYTTKEYLKFVNFINN  176 (436)
Q Consensus       112 DV~aAL~~LTkLKGVGPATASAILAa~--~Pe~vPFFSDEAf-~----~l---pg-~~kIKYTlKEYlell~~vr~  176 (436)
                      +...+++.|++||||||-||..+|..+  .|+.+|.  |--. .    ++   +. ....+-+.+.|.++.+..++
T Consensus        97 ~~~~~~~~L~~l~GIG~wTA~~il~~~~~~~d~fpv--D~~v~R~~~r~~~~~~~~~~~k~~~~~~~~~~~~~~~~  170 (190)
T d2noha1          97 SYEEAHKALCILPGVGTQVADCICLMALDKPQAVPV--DVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRS  170 (190)
T ss_dssp             CHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCC--CHHHHHHHHHHHCCCCSSSSCSSSCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCchHHHHHHHHHHHcCCCCeEee--cHHHHHHHHHHhcccCcchhhccccHHHHHHHHHHHHH
Confidence            467899999999999999999988765  4767773  5422 2    11   11 11234456777766665544

>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Mismatch glycosylase
domain: Catalytic domain of MutY
species: Escherichia coli [TaxId: 562]

Probab=94.88  E-value=0.053  Score=47.52  Aligned_cols=25  Identities=28%  Similarity=0.458  Sum_probs=22.2

Q ss_pred             HHHHHhhcCCCCcHHHHHHHHhhcC
Q psy4731         115 LALSALSNLKGVGTTLASALLAAAT  139 (436)
Q Consensus       115 aAL~~LTkLKGVGPATASAILAa~~  139 (436)
                      ...+.|.+|+||||-||.+||+.+.
T Consensus       106 ~~~~~L~~LpGVG~kTA~~il~~a~  130 (224)
T d1kg2a_         106 ETFEEVAALPGVGRSTAGAILSLSL  130 (224)
T ss_dssp             CSHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhhhhhhhHHHHHHhh
Confidence            4567899999999999999999876

>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Mismatch glycosylase
domain: Thymine-DNA glycosylase
species: Archaeon Methanobacterium thermoformicicum [TaxId: 145262]

Probab=94.64  E-value=0.022  Score=50.07  Aligned_cols=34  Identities=26%  Similarity=0.287  Sum_probs=27.1

Q ss_pred             HHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHH
Q psy4731         115 LALSALSNLKGVGTTLASALLAAATPEVAPFMADE  149 (436)
Q Consensus       115 aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDE  149 (436)
                      ...+.|.+|+||||-||++||+.+.- ...|.-|-
T Consensus       110 ~~~~~L~~LpGVG~kTA~~il~~~~~-~~~~~vD~  143 (217)
T d1keaa_         110 RNRKAILDLPGVGKYTCAAVMCLAFG-KKAAMVDA  143 (217)
T ss_dssp             SCHHHHHTSTTCCHHHHHHHHHHTTC-CCCCCCCH
T ss_pred             hhhHHHHHHHhhhhhhhHHHHHHhcC-Cccccccc
Confidence            46778999999999999999999874 34455555

>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Mismatch glycosylase
domain: Catalytic domain of MutY
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.54  E-value=0.041  Score=48.12  Aligned_cols=35  Identities=29%  Similarity=0.240  Sum_probs=27.3

Q ss_pred             HHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHHH
Q psy4731         115 LALSALSNLKGVGTTLASALLAAATPEVAPFMADEC  150 (436)
Q Consensus       115 aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDEA  150 (436)
                      ...+.|.+|+||||-||.+||+.+.- ..-|.-|--
T Consensus       104 ~~~~~Ll~LpGIG~kTA~~il~~a~~-~p~~~VDt~  138 (221)
T d1rrqa1         104 DDPDEFSRLKGVGPYTVGAVLSLAYG-VPEPAVNGN  138 (221)
T ss_dssp             CSHHHHHTSTTCCHHHHHHHHHHHTC-CCCCCCCHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHhc-CcccccCcc
Confidence            46678999999999999999999874 333555653

>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: DNA repair glycosylase, 2 C-terminal domains
domain: 3-Methyladenine DNA glycosylase II (gene alkA or aidA)
species: Escherichia coli [TaxId: 562]

Probab=94.03  E-value=0.021  Score=48.77  Aligned_cols=34  Identities=21%  Similarity=0.294  Sum_probs=28.7

Q ss_pred             cCHHHHHHHhhcCCCCcHHHHHHHHhhc--CCCCCc
Q psy4731         111 PNLELALSALSNLKGVGTTLASALLAAA--TPEVAP  144 (436)
Q Consensus       111 pDV~aAL~~LTkLKGVGPATASAILAa~--~Pe~vP  144 (436)
                      .+...+++.|++||||||-||..||-.+  .|+.+|
T Consensus       101 ~~~~e~~~~L~~l~GIGpwTAd~illf~lg~~dvfP  136 (183)
T d1mpga1         101 GDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFL  136 (183)
T ss_dssp             SCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCC
T ss_pred             ccHHHHHHHHHHhhcccHHHHHHHHHhhCCCCCccc
Confidence            4677899999999999999999998654  577666

>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Endonuclease III
domain: Endonuclease III
species: Escherichia coli [TaxId: 562]

Probab=93.16  E-value=0.018  Score=50.36  Aligned_cols=33  Identities=27%  Similarity=0.363  Sum_probs=25.3

Q ss_pred             HHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHH
Q psy4731         116 ALSALSNLKGVGTTLASALLAAATPEVAPFMADE  149 (436)
Q Consensus       116 AL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDE  149 (436)
                      ..+.|.+|+||||-||++||+.+.- ..-|.-|-
T Consensus       108 ~~~~L~~LpGVG~kTA~~il~~a~~-~~~~~VDt  140 (214)
T d1orna_         108 DRDELMKLPGVGRKTANVVVSVAFG-VPAIAVDT  140 (214)
T ss_dssp             CHHHHTTSTTCCHHHHHHHHHHHHC-CCCCCCCH
T ss_pred             CHHHHHhCcCcccchHHHHHHHHhc-CCcccccc
Confidence            4678999999999999999999863 33344444

>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: 3-Methyladenine DNA glycosylase III (MagIII)
domain: 3-Methyladenine DNA glycosylase III (MagIII)
species: Helicobacter pylori [TaxId: 210]

Probab=92.97  E-value=0.038  Score=48.64  Aligned_cols=39  Identities=26%  Similarity=0.294  Sum_probs=30.0

Q ss_pred             HHHHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHHHHH
Q psy4731         113 LELALSALSNLKGVGTTLASALLAAATPEVAPFMADECLM  152 (436)
Q Consensus       113 V~aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDEAf~  152 (436)
                      ...+.+.|++|+||||-||++||....- ..-|.-|--..
T Consensus       115 ~~~~~~~L~~lpGIG~kTA~~vl~~~~~-~~~~~vD~hv~  153 (217)
T d1pu6a_         115 QEVTREWLLDQKGIGKESADAILCYACA-KEVMVVDKYSY  153 (217)
T ss_dssp             HHCCHHHHHTSTTCCHHHHHHHHHHTTC-CSCCCCCHHHH
T ss_pred             cHHHHHHHHHHhhhhhHHHHHHHHHHcC-CeeeecChHHH
Confidence            4567889999999999999999988753 33455576443

>d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus elongatus [TaxId: 146786]}

class: All alpha proteins
fold: SAM domain-like
superfamily: PsbU/PolX domain-like
family: PsbU-like
domain: Photosystem II 12 kDa extrinsic protein PsbU
species: Thermosynechococcus elongatus [TaxId: 146786]

Probab=92.36  E-value=0.024  Score=45.70  Aligned_cols=50  Identities=24%  Similarity=0.374  Sum_probs=38.7

Q ss_pred             HHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHHHHHhcCCCCCCcc-CHHHHHH
Q psy4731         115 LALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIEGIDY-TTKEYLK  169 (436)
Q Consensus       115 aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDEAf~~lpg~~kIKY-TlKEYle  169 (436)
                      +....|+.|+||||++|-.|+.     .-||-|=|=++.++|....++ .++.|+.
T Consensus        24 As~~eL~~lpGIg~~~A~~Iv~-----~gpf~s~edL~~V~GIg~~~~e~lk~yl~   74 (98)
T d2axtu1          24 TNIAAFIQYRGLYPTLAKLIVK-----NAPYESVEDVLNIPGLTERQKQILRENLE   74 (98)
T ss_dssp             SCGGGGTTSTTCTHHHHHHHHH-----SCCCSSGGGGGGCTTCCTTHHHHHHHHGG
T ss_pred             ccHHHHHHhhhhcHHHHHHHHH-----cCCcCCHHHHhhCCCCCHHHHHHHHHHHh
Confidence            4667899999999999999994     469999888888888666544 3455543

>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Endonuclease III
domain: Endonuclease III
species: Escherichia coli [TaxId: 562]

Probab=90.99  E-value=0.041  Score=48.09  Aligned_cols=34  Identities=29%  Similarity=0.295  Sum_probs=26.4

Q ss_pred             HHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHH
Q psy4731         115 LALSALSNLKGVGTTLASALLAAATPEVAPFMADE  149 (436)
Q Consensus       115 aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDE  149 (436)
                      ...+.|..|+||||-||++||+.+.-. .-|.-|-
T Consensus       106 ~~~~~L~~LpGVG~~TA~~Il~~a~~~-p~~~vD~  139 (211)
T d2abka_         106 EDRAALEALPGVGRKTANVVLNTAFGW-PTIAVDT  139 (211)
T ss_dssp             SCHHHHHHSTTCCHHHHHHHHHHHHCC-CCCCCCH
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHhcC-ccccccH
Confidence            456778899999999999999998743 3455564

>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Mismatch glycosylase
domain: Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.17  E-value=0.083  Score=43.78  Aligned_cols=24  Identities=13%  Similarity=0.068  Sum_probs=19.8

Q ss_pred             HHHHhhcCCCCcHHHHHHHHhhcC
Q psy4731         116 ALSALSNLKGVGTTLASALLAAAT  139 (436)
Q Consensus       116 AL~~LTkLKGVGPATASAILAa~~  139 (436)
                      ..+.|++|+||||-||.+++.+..
T Consensus        91 ~~~~l~~LpGVG~~tad~~~if~~  114 (144)
T d1ngna_          91 QWRYPIELHGIGKYGNDSYRIFCV  114 (144)
T ss_dssp             CCSSGGGSTTCCHHHHHHHHHHTS
T ss_pred             hhhhHHhcCCccHHHHHHHHHHHc
Confidence            345688999999999999987754

>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: PsbU/PolX domain-like
family: DNA polymerase beta-like, second domain
domain: DNA polymerase beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.09  E-value=0.19  Score=36.75  Aligned_cols=26  Identities=15%  Similarity=0.379  Sum_probs=22.5

Q ss_pred             HHHHHHHhhcCCCCcHHHHHHHHhhc
Q psy4731         113 LELALSALSNLKGVGTTLASALLAAA  138 (436)
Q Consensus       113 V~aAL~~LTkLKGVGPATASAILAa~  138 (436)
                      -..+|+.|++.-||||+||--+..-+
T Consensus         2 ~~~~l~~l~~I~GvGp~~A~~l~~~G   27 (57)
T d2fmpa2           2 TSSSINFLTRVSGIGPSAARKFVDEG   27 (57)
T ss_dssp             HHHHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred             cchHHHHHhccccccHHHHHHHHHhC
Confidence            35689999999999999999887665

>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.70  E-value=0.3  Score=35.08  Aligned_cols=38  Identities=24%  Similarity=0.287  Sum_probs=26.5

Q ss_pred             HhhcCCCCcHHHHHHHHhhcCC--CCCccccHHHHHhcCC
Q psy4731         119 ALSNLKGVGTTLASALLAAATP--EVAPFMADECLMAIPE  156 (436)
Q Consensus       119 ~LTkLKGVGPATASAILAa~~P--e~vPFFSDEAf~~lpg  156 (436)
                      .|..++||||+||..++..+..  +.+-..+-|-...++|
T Consensus         2 ~L~~i~GIG~~~a~~L~~~g~~sv~~l~~a~~~eL~~i~G   41 (61)
T d1pzna1           2 SIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAG   41 (61)
T ss_dssp             CSSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHC
T ss_pred             ccccCCCCCHHHHHHHHHhcCCCHHHHHhCCHHHHHHCCC
Confidence            4789999999999999987642  2344444454555665

>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: SAM domain-like
superfamily: RuvA domain 2-like
family: DNA helicase RuvA subunit, middle domain
domain: DNA helicase RuvA subunit, middle domain
species: Escherichia coli [TaxId: 562]

Probab=81.31  E-value=0.3  Score=37.50  Aligned_cols=28  Identities=29%  Similarity=0.444  Sum_probs=23.8

Q ss_pred             HHHHHHhhcCCCCcHHHHHHHHhhcCCC
Q psy4731         114 ELALSALSNLKGVGTTLASALLAAATPE  141 (436)
Q Consensus       114 ~aAL~~LTkLKGVGPATASAILAa~~Pe  141 (436)
                      +.-+..|....||||-||=+||+.+.|+
T Consensus         5 r~~F~~Li~V~GIGpK~Al~iLs~~~~~   32 (78)
T d1cuka2           5 RTLFKELIKTNGVGPKLALAILSGMSAQ   32 (78)
T ss_dssp             HHHHHHHHHSSSCCHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHccCCccHHHHHHHHHhCCHH
Confidence            3456789999999999999999987763