Psyllid ID: psy4735

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230--
MVLINRVDKTCPKLTVLFIELRHSLGLDMRRKDKPVYLIPHEYAHYHLDLTATAEKFRLSGLPYTWLTESPEMPHPDWLKLFLNKDQSLQEMYKLNDDSLLPFLCQVGISQLSSLDLTESPEMPHPDWLKLFLNKDQSLQEMYKLNGDSLLPFLCQSGQNLHHHFRVPGKKTFNLIPGLDKSFYGSIRFGQVLLWGQTDRPTDRRHRSDYNSPSLIPFFITIFLSRASQSEWNLLCERLSTSECLVVVNAVRVLIQLVESRTHAPCTVEPYVNCLHQTMICFINVLKNQLPYVCTTSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKSKTCNPLLSRMTLHSILDSTDPSDDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEGTGSVLSNLGDMTHIEDIIEKCKHLKQQTDISSTHETKAKKMRLNEEAQTQLSGEGEKKTHDEMVKDAQNRADLEKKILDERVKDAQNRVDLEKNPEETVNDASNSNVITTNITEINQNETKSKHIARTNESEAKREEIAPNATGAYQNQENSVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECQFPPDCSDKARYKLLGNSINVHVVAYCICLMLCEPAPMIDNSSTDETKAKKIKLDVEDTETQFGDEGEREILDEMVKDAQNRVDLEKKTLDEKVNDTLNQDDLVEKELLNGKVNDTLNKANSKDITTDVTGTNQNEAKSKQVTDIARTNESEAKREDISPNVMGAYQKDGSVTALGTNENAGNSVTTTRTNQNEENGVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDDCRFPPDCSDKSRYKLLGNSINVHVVAYCICLMLCEPAPMMTELPKLKANTCNPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNRKASSTNCFTKAYTHYAEGTGSVLSNLGDMTQIEEIIEKCKHLKQQIDNSSTDETKAKKIKLDVEDTETQFGDEGEREILDEMVKDAQNRVNLEKKTLDEKVNDTLNQDDLVEKELLNEKVNDTLNKANSKDITTNVTGTNQNEAKSKHVTEIARTNEREAKREDISPNVTGANQRDGSVNALGTNENAGNSVTTTRTNQNEESSVNTLETNQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECRFPPDCSDKSRYKLLGNSINVHVVAYCICLMLCEPAPMV
cccccccccccccEEEEEEHHHcccccccccccccEEEcccccccccccccccHHHHccccccccccccccccccHHHHHHHccccHHHHHHHHcccccccHHHHHHccccccccccccccccccHHHHHHHccccHHHHHHHHHccccccHHHccccccccccccccccccccccccccccccccEEccEEEEEccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHcccccEEEEEHHHHHHHHHHHHHcccccccccccccccccEEEEEEccccccHHHHHHHHHHHcccEEEEEEEcccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccHHHHHHHHcccccccccccccEEEccccccEEEcccccccccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHccccccccccHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHccccccEEcccccccccccccccHHHHHccccHHHHHHHHHccccccccHHHHHHHccccccccccccccHHHHHHHHcccEEHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHccccHHHHHcccccccccccccccccHHHcccccccccccccccccccccccccEEEEccccccccccccccccEEEEcccccccccccccccccccHHHHHHHHHccccccccHHHHHHHccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccEEEEccccccEEEccccccEEEccccEEcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccccccccccHHcHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHccccccEEEEccccccccccccccccccccccccccEEEEcccccccccccccccccccHHHHHHHHHccccccccHHHHHHHccccccccccccccHHHHHHHHcccEEHHHHHHHHHHHcccccccc
cEEEEccccccccHEEHEEEEHHccccccccccccEEEEccHHHHHHHHHHHHHHHHcccccccEEccccccccccHHHHHHHcHcccHHHHHHHcccccHHHHHHHcHcHcccccccccccccccHHHHHHHcHccHHHHHHHHccccccHEEccccccccccEEccccccEEcccccccccEEEEEccEEEEEcccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccEcccHccccccEEEEHHHHHcccHHHHHHHHHHHcccEEEEEEEccccccccccccEEEEEEEccccccccccccccccccccHcccccccccccccccccccHHHHHHcccccHHHHHHccccHHHHHHHHHHHcEEccccccEEEEEccccEEEEccccEEcccccHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHccccccccccHHHHHHHHHHHHHccccccHHHHHccccccccccccEEccccccccccccccccccccccccHHHccccccccHHHHHcccccccHHHHHccHHHHHccccHHHHHHHHHHcccccccHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHccccHHccccccccccHHHccccHHccccccccccccccccccccccccEEEHcccccccccccccccccccHHHHHccccccccccccHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHcccccccEEEcccEEEccccccccccEEEEcccccEHHHHHHHHHccccHHHHHHHHHHcccEEccHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEccccccccccccccHHcHHHHHHcccccccHHHHccccHHHHHHHHHEEEEEcccccccEEEEEEEEEEEcccccEEccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccccccccccccHHHHHHHcccccccccccccccccccccccHHHHHHccccccccccccHHHHHHcccccccccccccccHHHccccHHHHHHHHccccccccccEEcEEEccccccccccEEEEcccHHHHHHHHHcccccccHHHHHHHHHHcccEcccHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHccccccc
mvlinrvdktcpKLTVLFIELRHslgldmrrkdkpvylipheyahyhlDLTATAEKFRlsglpytwltespemphpdwLKLFLNKDQSLQEMYKLNDDSLLPFLCQVGisqlssldltespemphpdwLKLFLNKDQSLQEMYKLNgdsllpflcqsgqnlhhhfrvpgkktfnlipgldksfygsiRFGQVllwgqtdrptdrrhrsdynspslipFFITIFLSRASQSEWNLLCERLSTSECLVVVNAVRVLIQLVEsrthapctvepyvnCLHQTMICFINVlknqlpyvcttsmltragfrfqefllsptqfgvpnsrTRYYLIAkrspaahsseasfcFETSSELMtelpklksktcnpllsrmtlhsildstdpsddlyrRYLVSDKDLLRRFHVfdivngkasstncFTKAYThyaegtgsvlsnlgdmtHIEDIIEKCKHLKQQTDISSTHETKAKKMRLNEEAQTqlsgegekktHDEMVKDAQNRADLEKKILDERVKDAQNrvdleknpeetvndasnsnvITTNITEINQNETKSKHIARTneseakreeiapnatgayqnqENSVNTLLANQNEATLLQELKRlnlryfspdeirklmcfpdecqfppdcsdkaRYKLLGNSINVHVVAYCICLMlcepapmidnsstdetKAKKIKldvedtetqfgdegEREILDEMVKDAQNRVDLEKKTLDEKVNDTLNQDDLVEKELLngkvndtlnkanskdittdvtgtnqneakskQVTDIARTneseakredispnvmgayqkdgsvtalgtnenagnsvtttrtnqneengVNTLLANQNEATLLQELKRlnlryfspdeirklmcfpddcrfppdcsdksrykllgNSINVHVVAYCICLmlcepapmmtelpklkantcnpllsrmtlhgildsthpsgdlyrrylvsdkdllrrfhvfdivnrkasstncfTKAYThyaegtgsvlsnlgdmTQIEEIIEKCKHLKQQIDNSSTDETKAKKIkldvedtetqfgdegEREILDEMVKDAQNRVNLEKKTLDEKVNDTLNQDDLVEKELLNEKVNDTLnkanskdittnvtgtnqneaksKHVTEIARTNereakredispnvtganqrdgsvnalgtnenagnsvtttrtnqneessvnTLETNQNEATLLQELKRlnlryfspdeirklmcfpdecrfppdcsdksrykllgNSINVHVVAYCICLmlcepapmv
mvlinrvdktcpklTVLFIELrhslgldmrrkDKPVYLIPHEYAHYHLDLTATAEKFRLSGLPYTWLTESPEMPHPDWLKLFLNKDQSLQEMYKLNDDSLLPFLCQVGISQLSSLDLTESPEMPHPDWLKLFLNKDQSLQEMYKLNGDSLLPFLCQSGQNLHHHFRVPGKKTFNLIPGLDKSFYGSIRFGQVLLwgqtdrptdrrhrsdynspslIPFFITIFLSRASQSEWNLLCERLSTSECLVVVNAVRVLIQLVESRTHAPCTVEPYVNCLHQTMICFINVLKNQLPYVCTTSMLTRAGFRFQEfllsptqfgvpnSRTRYYLIAKrspaahsseaSFCFETSSELMTELPKLKSKTCNPLLSRMTLHSildstdpsddLYRRYLVSDKDLLRRFHVFdivngkasstnCFTKAYTHYAEGTGSVLSNLGDMTHIEDIIEKCKHLKQQTDISSTHETKAKKMRLNEEaqtqlsgegekkthdeMVKDAQNRADLEKKILDERVKdaqnrvdleknpeetvndasnsnvittniteinqnetkskhiartneseakreeiapnatgayqNQENSVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECQFPPDCSDKARYKLLGNSINVHVVAYCICLMLCEPAPMIDNSSTDETKAKkikldvedtetqfgdegereILDEMVKDAQNRVDlekktldekvndtlnqddlvekellngkvndtlnkanskdittdvtgtnqneakskqvtdiartneseakredispnvMGAYQKDGSVTALGTNENAGNSVTttrtnqneengVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDDCRFPPDCSDKSRYKLLGNSINVHVVAYCICLMLCEPAPMMTELPKLKANTCNPLLSRMTLHGIldsthpsgdLYRRYLVSDKDLLRRFHVFdivnrkasstncFTKAYTHYAegtgsvlsnLGDMTQIEEIIEKCKHLKqqidnsstdetkakkikldvedtetqfgdegereILDEMVKDAQNRVNlekktldekvndtlnqddlVEKELLNEKVNDtlnkanskdittnvtgtnqneakskhvteiartnereakredispnvtganqrdgsvnalgtnenagnsvtttrtnqneessvntletnqNEATLLQELKRLNLRYFSPDEIRKLMCFPDECRFPPDCSDKSRYKLLGNSINVHVVAYCICLMLCEPAPMV
MVLINRVDKTCPKLTVLFIELRHSLGLDMRRKDKPVYLIPHEYAHYHLDLTATAEKFRLSGLPYTWLTESPEMPHPDWLKLFLNKDQSLQEMYKLNDDSLLPFLCQVGISQLSSLDLTESPEMPHPDWLKLFLNKDQSLQEMYKLNGDSLLPFLCQSGQNLHHHFRVPGKKTFNLIPGLDKSFYGSIRFGQVLLWGQTDRPTDRRHRSDYNSPSLIPFFITIFLSRASQSEWNLLCERLSTSECLVVVNAVRVLIQLVESRTHAPCTVEPYVNCLHQTMICFINVLKNQLPYVCTTSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKSKTCNPLLSRMTLHSILDSTDPSDDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEGTGSVLSNLGDMTHIEDIIEKCKHLKQQTDISSTHETKAKKMRLNEEAQTQLSGEGEKKTHDEMVKDAQNRADLEKKILDERVKDAQNRVDLEKNPEETVNDAsnsnvittniteinqnetKSKHIARTNESEAKREEIAPNATGAYQNQENSVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECQFPPDCSDKARYKLLGNSINVHVVAYCICLMLCEPAPMIDNSSTDETKAKKIKLDVEDTETQFGDEGEREILDEMVKDAQNRVDLEKKTLDEKVNDTLNQDDLVEKELLNGKVNDTLNKANSKDITTDVTGTNQNEAKSKQVTDIARTNESEAKREDISPNVMGAYQKDGSVTALGTNENAGNSVTTTRTNQNEENGVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDDCRFPPDCSDKSRYKLLGNSINVHVVAYCICLMLCEPAPMMTELPKLKANTCNPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNRKASSTNCFTKAYTHYAEGTGSVLSNLGDMTQIEEIIEKCKHLKQQIDNSSTDETKAKKIKLDVEDTETQFGDEGEREILDEMVKDAQNRVNLEKKTLDEKVNDTLNQDDLVEKELLNEKVNDTLNKANSKDITTNVTGTNQNEAKSKHVTEIARTNEREAKREDISPNVTGANQRDGSVNALGTNENAGNSVTTTRTNQNEESSVNTLETNQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECRFPPDCSDKSRYKLLGNSINVHVVAYCICLMLCEPAPMV
**LINRVDKTCPKLTVLFIELRHSLGLDMRRKDKPVYLIPHEYAHYHLDLTATAEKFRLSGLPYTWLTESPEMPHPDWLKLFLNKDQSLQEMYKLNDDSLLPFLCQVGISQLSSLDL********PDWLKLFLNKDQSLQEMYKLNGDSLLPFLCQSGQNLHHHFRVPGKKTFNLIPGLDKSFYGSIRFGQVLLWGQT**************PSLIPFFITIFLSRASQSEWNLLCERLSTSECLVVVNAVRVLIQLVESRTHAPCTVEPYVNCLHQTMICFINVLKNQLPYVCTTSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAK***********FCF*****************CNPLLSRMTLHSILDST**SDDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEGTGSVLSNLGDMTHIEDIIEKCKHL*****************************************************************************************************************************************EATLLQELKRLNLRYFSPDEIRKLMCFPDECQFPPDCSDKARYKLLGNSINVHVVAYCICLMLCEPA********************************************************************************************************************************************************************LLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDDCRFPPDCSDKSRYKLLGNSINVHVVAYCICLMLCEPAPMMTELPKLKANTCNPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNRKASSTNCFTKAYTHYAEGTGSVLSNLGDMTQIEEIIEKCKHL******************************************************************************************************************************************************************************LLQELKRLNLRYFSPDEIRKLMCFPDECRFPPDCSDKSRYKLLGNSINVHVVAYCICLMLCE*****
**LINR*DKTCPKLTVLFIELRHSLGLDMRRKDKPVYLIPHEYAHYHLDLTATAEKFRLSGLPYTWLTESPEMPHPDWLKLFLNKDQSLQEMYKLNDDSLLPFLCQVGISQLSSLDLTESPEMPHPDWLKLFLNKDQSLQEMYKLNGDSLLPFLCQSGQNLHHHFRVPGKKTFNLIPGLDKSFYGSIRFGQVLLWGQTD***********NSPSLIPFFITIFLSRASQSEWNLLCERLSTSECLVVVNAVRVLIQLVESRTHAPCTVEPYVNCLHQTMICFINVLKNQLPYVCTTSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELP*************MTLHSILDSTDPSDDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEGTGSVLSNLGDMTHIEDII*******************AKKMRLNEEAQTQLSGEGEKKTHDE**********LEKKILDERVKDAQNRVDLEKNPEETVNDASNSNVITTNITEINQNETKSKHIARTNESEAKREEIAPNATGAYQNQENSVNTLLA**********LKRLNLRYFSPDEIRKLMCFPDECQFPPDCSDKARYKLLGNSINVHVVAYCICLMLCEPAP****************L*****************************************************L**********************G*NQNEAKSKQVTDIARTNESEAKREDISPNVMGAYQKDGSVTALGTNENAGNSVTTTRTNQNEENGVNTLLA**********LKRLNLRYFSPDEIRKLMCFPDDCRFPPDCSDKSRYKLLGNSINVHVVAYCICLMLCEPAPMMTELPKLKANTCN*****MTL*GILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNRKASSTNCFTKAYTHYAEGTGSVLSNLGDMTQIEEII******************************************************************************************A**KDITTNV***************IARTNEREAKREDISPNVTGANQRDGSVNALGTNENAGNSVTTTRTNQNEESSVN**************LKRLNLRYFSPDEIRKLMCFPDECRFPPDCSDKSRYKLLGNSINVHVVAYCICLMLCEPA***
MVLINRVDKTCPKLTVLFIELRHSLGLDMRRKDKPVYLIPHEYAHYHLDLTATAEKFRLSGLPYTWLTESPEMPHPDWLKLFLNKDQSLQEMYKLNDDSLLPFLCQVGISQLSSLDLTESPEMPHPDWLKLFLNKDQSLQEMYKLNGDSLLPFLCQSGQNLHHHFRVPGKKTFNLIPGLDKSFYGSIRFGQVLLWGQTDRPTDRRHRSDYNSPSLIPFFITIFLSRASQSEWNLLCERLSTSECLVVVNAVRVLIQLVESRTHAPCTVEPYVNCLHQTMICFINVLKNQLPYVCTTSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAK**********SFCFETSSELMTELPKLKSKTCNPLLSRMTLHSILDSTDPSDDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEGTGSVLSNLGDMTHIEDIIEKCKHLKQQTDISSTHETKAKKMRLN******************MVKDAQNRADLEKKILDERVKDAQNRVDLEK********ASNSNVITTNITEINQNETKSKHIARTNESEAKREEIAPNATGAYQNQENSVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECQFPPDCSDKARYKLLGNSINVHVVAYCICLMLCEPAPMIDNSSTDETKAKKIKLDVEDTETQFGDEGEREILDEMVKDAQNRVDLEKKTLDEKVNDTLNQDDLVEKELLNGKVNDTLNKANSKDITTDVTGTNQNEAKSKQVTDIARTNESEAKREDISPNVMGAYQKDGSVTALGTNENAGNSVTTTRTNQNEENGVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDDCRFPPDCSDKSRYKLLGNSINVHVVAYCICLMLCEPAPMMTELPKLKANTCNPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNRKASSTNCFTKAYTHYAEGTGSVLSNLGDMTQIEEIIEKCKHLKQQIDNSSTDETKAKKIKLDVEDTETQFGDEGEREILDEMVKDAQNRVNLEKKTLDEKVNDTLNQDDLVEKELLNEKVNDTLNKANSKDITTNVTGTNQNEAKSKHVTEIARTNEREAKREDISPNVTGANQRDGSVNALGTNENAG********************TNQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECRFPPDCSDKSRYKLLGNSINVHVVAYCICLMLCEPAPMV
MVLINRVDKTCPKLTVLFIELRHSLGLDMRRKDKPVYLIPHEYAHYHLDLTATAEKFRLSGLPYTWLTESPEMPHPDWLKLFLNKDQSLQEMYKLNDDSLLPFLCQVGISQLSSLDLTESPEMPHPDWLKLFLNKDQSLQEMYKLNGDSLLPFLCQSGQNLHHHFRVPGKKTFNLIPGLDKSFYGSIRFGQVLLWGQTD********SDYNSPSLIPFFITIFLSRASQSEWNLLCERLSTSECLVVVNAVRVLIQLVESRTHAPCTVEPYVNCLHQTMICFINVLKNQLPYVCTTSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKSKTCNPLLSRMTLHSILDSTDPSDDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEGTGSVLSNLGDMTHIEDIIEKCKHLKQQTDISSTHETKAKKMRLNEEAQTQLSGEGEKKTHDEMVKDAQNRADLEKKILDERVKDAQNRVDLEKNPEETVNDASNSNVITTNITEIN**************SEAKREEIAPNATGAYQNQENSVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECQFPPDCSDKARYKLLGNSINVHVVAYCICLMLCEPAP*I******************************************RVD*EKKTLDEKVNDTLNQDDLVEKE**NGKVNDTLNKANSKDITTDVTGTNQNEAKSKQVTDIARTNESEAKREDISPNVMGAYQKDGSVTALGTNENAGNSVTTTRTNQNEENGVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDDCRFPPDCSDKSRYKLLGNSINVHVVAYCICLMLCEPAPMMTELPKLKANTCNPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNRKASSTNCFTKAYTHYAEGTGSVLSNLGDMTQIEEIIEKCKHLKQQID****************************************************************E**************************************************EDISPNVTGANQRDGSVNALGTNENAGNSVTTTRTNQNEESSVNTLETNQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECRFPPDCSDKSRYKLLGNSINVHVVAYCICLMLCEP****
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MVLINRVDKTCPKLTVLFIELRHSLGLDMRRKDKPVYLIPHEYAHYHLDLTATAEKFRLSGLPYTWLTESPEMPHPDWLKLFLNKDQSLQEMYKLNDDSLLPFLCQVGISQLSSLDLTESPEMPHPDWLKLFLNKDQSLQEMYKLNGDSLLPFLCQSGQNLHHHFRVPGKKTFNLIPGLDKSFYGSIRFGQVLLWGQTDRPTDRRHRSDYNSPSLIPFFITIFLSRASQSEWNLLCERLSTSECLVVVNAVRVLIQLVESRTHAPCTVEPYVNCLHQTMICFINVLKNQLPYVCTTSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKSKTCNPLLSRMTLHSILDSTDPSDDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEGTGSVLSNLGDMTHIEDIIEKCKHLKQQTDISSTHETKAKKMRLNEEAQTQLSGEGEKKTHDEMVKDAxxxxxxxxxxxxxxxxxxxxxVDLEKNPEETVNDASNSNVITTNITEINQNETKSKHIARTNESEAKREEIAPNATGAYQNQENSVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECQFPPDCSDKARYKLLGNSINVHVVAYCICLMLCEPAPMIDNSSTDETKAKKIKLDVEDTETQFGDEGEREILDEMxxxxxxxxxxxxxxxxxxxxxTLNQDDLVEKELLNGKVNDTLNKANSKDITTDVTGTNQNEAKSKQVTDIARTNESEAKREDISPNVMGAYQKDGSVTALGTNENAGNSVTTTRTNQNEENGVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDDCRFPPDCSDKSRYKLLGNSINVHVVAYCICLMLCEPAPMMTELPKLKANTCNPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNRKASSTNCFTKAYTHYAEGTGSVLSNLGDMTQxxxxxxxxxxxxxxxxxxxxxETKAKKIKLDVEDTETQFGDEGEREILDEMxxxxxxxxxxxxxxxxxxxxxTLNQDDxxxxxxxxxxxxxxxxxxxxxDITTNVTGTNQNEAKSKHVTEIARTNEREAKREDISPNVTGANQRDGSVNALGTNENAGNSVTTTRTNQNEESSVNTLETNQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECRFPPDCSDKSRYKLLGNSINVHVVAYCICLMLCEPAPMV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1232 2.2.26 [Sep-21-2011]
Q7YS61391 tRNA (cytosine-5-)-methyl yes N/A 0.118 0.373 0.316 7e-15
O14717391 tRNA (cytosine(38)-C(5))- yes N/A 0.119 0.375 0.3 1e-14
Q4G073391 tRNA (cytosine(38)-C(5))- yes N/A 0.132 0.416 0.310 2e-14
P40999330 tRNA (cytosine(38)-C(5))- yes N/A 0.093 0.348 0.305 2e-09
O55055415 tRNA (cytosine(38)-C(5))- yes N/A 0.135 0.402 0.298 2e-09
Q54JH6379 DNA (cytosine-5)-methyltr yes N/A 0.105 0.343 0.294 4e-09
>sp|Q7YS61|TRDMT_BOVIN tRNA (cytosine-5-)-methyltransferase OS=Bos taurus GN=TRDMT1 PE=2 SV=1 Back     alignment and function desciption
 Score = 84.0 bits (206), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 85/199 (42%), Gaps = 53/199 (26%)

Query: 303 GFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKS--- 359
           GF++QEFLLSPT  G+PNSR RY+LIAK  P        F F+   +++ E PK +S   
Sbjct: 141 GFQYQEFLLSPTSLGIPNSRLRYFLIAKLQPEP------FPFQAPGQVLMEFPKTESEHP 194

Query: 360 ------------------KTC----------NPLLSRMTLHSILDSTDPSD-DLYRR--- 387
                             K C            +L ++     +D     D DL  R   
Sbjct: 195 PKYAINAEKKTEEKKTGPKICFDSSTQCSGKEAILFKLETAGEIDRKHQQDSDLSVRMLK 254

Query: 388 -----------YLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEGTGSVLSNLGDM 436
                      + +  K LLR   + DIV   +  + CFTK Y  Y EGTGSVL    D+
Sbjct: 255 DFLEDDIDKHSFFLPPKSLLRYALLLDIVKPTSRRSMCFTKGYGRYIEGTGSVLQTTEDV 314

Query: 437 THIEDIIEKCKHLKQQTDI 455
             IE+I +    L Q+  I
Sbjct: 315 -QIENIYKSLTSLSQEEKI 332
Specifically methylates cytosine 38 in the anticodon loop of tRNA(Asp).
Bos taurus (taxid: 9913)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 0EC: 4
>sp|O14717|TRDMT_HUMAN tRNA (cytosine(38)-C(5))-methyltransferase OS=Homo sapiens GN=TRDMT1 PE=1 SV=1 Back     alignment and function description
>sp|Q4G073|TRDMT_RAT tRNA (cytosine(38)-C(5))-methyltransferase OS=Rattus norvegicus GN=Trdmt1 PE=2 SV=1 Back     alignment and function description
>sp|P40999|PMT1M_SCHPO tRNA (cytosine(38)-C(5))-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmt1 PE=1 SV=1 Back     alignment and function description
>sp|O55055|TRDMT_MOUSE tRNA (cytosine(38)-C(5))-methyltransferase OS=Mus musculus GN=Trdmt1 PE=2 SV=2 Back     alignment and function description
>sp|Q54JH6|CMT1_DICDI DNA (cytosine-5)-methyltransferase OS=Dictyostelium discoideum GN=dnmA PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1232
112983066336 DNA cytosine-5 methyltransferase [Bombyx 0.117 0.431 0.397 5e-19
321476287341 hypothetical protein DAPPUDRAFT_187425 [ 0.113 0.410 0.358 5e-18
157112484344 DNA (cytosine-5)-methyltransferase [Aede 0.094 0.340 0.414 5e-18
328782909360 PREDICTED: tRNA (cytosine-5-)-methyltran 0.125 0.427 0.366 4e-17
13096616343 Chain A, Structure Of Human Dnmt2, An En 0.118 0.425 0.370 5e-17
340725061354 PREDICTED: tRNA (cytosine(38)-C(5))-meth 0.116 0.406 0.366 5e-17
350398300354 PREDICTED: tRNA (cytosine(38)-C(5))-meth 0.114 0.398 0.366 8e-17
170063953345 DNA (cytosine-5)-methyltransferase [Cule 0.095 0.342 0.416 8e-17
198430517343 PREDICTED: similar to DNA methyltransfer 0.101 0.364 0.380 2e-16
194861352331 GG23765 [Drosophila erecta] gi|190661632 0.126 0.471 0.340 2e-16
>gi|112983066|ref|NP_001036934.1| DNA cytosine-5 methyltransferase [Bombyx mori] gi|54888741|dbj|BAD67190.1| DNA cytosine-5 methyltransferase [Bombyx mori] Back     alignment and taxonomy information
 Score =  103 bits (258), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/171 (39%), Positives = 93/171 (54%), Gaps = 26/171 (15%)

Query: 299 LTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLK 358
           LT  GF +QEF+LSP   GVPNSR RYY IAKR+   +       F+   EL+T LPK  
Sbjct: 139 LTYCGFVYQEFMLSPVSVGVPNSRLRYYCIAKRNNTWN-------FKRKDELITCLPKTF 191

Query: 359 SKTCNPLLSRMTLHSILDSTDPSDDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKA 418
           +K          L  I+++  P D     YLV DK +LR+ ++FDI    ++ + CFTKA
Sbjct: 192 AKP-------HCLKDIIENNVPDD-----YLVPDK-MLRKANIFDICYADSNRSCCFTKA 238

Query: 419 YTHYAEGTGSVLSNLGDMTHIEDIIEKCKHLKQQTDISSTHETKA-KKMRL 468
           YTHY EGTGSV +         DI++K   L    ++ S    +  KK++L
Sbjct: 239 YTHYVEGTGSVFTETS-----YDIVQKYLKLANYFEVGSDEFLQTLKKLKL 284

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|321476287|gb|EFX87248.1| hypothetical protein DAPPUDRAFT_187425 [Daphnia pulex] Back     alignment and taxonomy information
>gi|157112484|ref|XP_001657555.1| DNA (cytosine-5)-methyltransferase [Aedes aegypti] gi|108878059|gb|EAT42284.1| AAEL006166-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|328782909|ref|XP_393991.3| PREDICTED: tRNA (cytosine-5-)-methyltransferase [Apis mellifera] Back     alignment and taxonomy information
>gi|13096616|pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna Methyltransferase Homologue Back     alignment and taxonomy information
>gi|340725061|ref|XP_003400893.1| PREDICTED: tRNA (cytosine(38)-C(5))-methyltransferase-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350398300|ref|XP_003485152.1| PREDICTED: tRNA (cytosine(38)-C(5))-methyltransferase-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|170063953|ref|XP_001867327.1| DNA (cytosine-5)-methyltransferase [Culex quinquefasciatus] gi|167881402|gb|EDS44785.1| DNA (cytosine-5)-methyltransferase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|198430517|ref|XP_002128135.1| PREDICTED: similar to DNA methyltransferase 2 [Ciona intestinalis] Back     alignment and taxonomy information
>gi|194861352|ref|XP_001969765.1| GG23765 [Drosophila erecta] gi|190661632|gb|EDV58824.1| GG23765 [Drosophila erecta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1232
ZFIN|ZDB-GENE-041008-138381 trdmt1 "tRNA aspartic acid met 0.051 0.167 0.546 4.9e-27
UNIPROTKB|E2RM86391 TRDMT1 "Uncharacterized protei 0.071 0.225 0.433 5.4e-18
RGD|1306292391 Trdmt1 "tRNA aspartic acid met 0.073 0.230 0.419 1.3e-15
MGI|MGI:1274787415 Trdmt1 "tRNA aspartic acid met 0.048 0.144 0.524 6.4e-22
UNIPROTKB|E7EMI8310 TRDMT1 "tRNA (cytosine(38)-C(5 0.071 0.283 0.433 8.4e-18
UNIPROTKB|Q7YS61391 TRDMT1 "tRNA (cytosine-5-)-met 0.073 0.230 0.419 1.5e-17
UNIPROTKB|O14717391 TRDMT1 "tRNA (cytosine(38)-C(5 0.071 0.225 0.433 2.6e-16
DICTYBASE|DDB_G0288047379 dnmA "DNA (cytosine-5-)-methyl 0.069 0.226 0.347 3.2e-16
UNIPROTKB|F1NJ02398 TRDMT1 "Uncharacterized protei 0.072 0.223 0.450 8.4e-16
TAIR|locus:2179469383 DNMT2 "DNA methyltransferase-2 0.060 0.195 0.389 3.2e-11
ZFIN|ZDB-GENE-041008-138 trdmt1 "tRNA aspartic acid methyltransferase 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 171 (65.3 bits), Expect = 4.9e-27, Sum P(3) = 4.9e-27
 Identities = 35/64 (54%), Positives = 46/64 (71%)

Query:  1162 NEATLLQELKRLNLRYFSPDEIRKLMCFPDECRFPPDCSDKSRYKLLGNSINVHVVAYCI 1221
             +E   L++L RL LRYF+P EI +LM FPD   FP   S K +Y++LGNS+NVHVV++ I
Sbjct:   316 SEEDKLKQLLRLKLRYFTPREISRLMGFPDHFTFPKHISFKQQYRVLGNSLNVHVVSHLI 375

Query:  1222 CLML 1225
              LML
Sbjct:   376 RLML 379
GO:0006306 "DNA methylation" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA
GO:0008168 "methyltransferase activity" evidence=IEA
GO:0005575 "cellular_component" evidence=ND
GO:0016740 "transferase activity" evidence=IEA
GO:0032259 "methylation" evidence=IEA
UNIPROTKB|E2RM86 TRDMT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1306292 Trdmt1 "tRNA aspartic acid methyltransferase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1274787 Trdmt1 "tRNA aspartic acid methyltransferase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E7EMI8 TRDMT1 "tRNA (cytosine(38)-C(5))-methyltransferase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q7YS61 TRDMT1 "tRNA (cytosine-5-)-methyltransferase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O14717 TRDMT1 "tRNA (cytosine(38)-C(5))-methyltransferase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288047 dnmA "DNA (cytosine-5-)-methyltransferase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1NJ02 TRDMT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
TAIR|locus:2179469 DNMT2 "DNA methyltransferase-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1232
cd00315275 cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specifi 3e-11
cd00315275 cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specifi 3e-10
cd00315275 cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specifi 6e-10
cd00315275 cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specifi 6e-05
pfam00145320 pfam00145, DNA_methylase, C-5 cytosine-specific DN 4e-04
pfam00145320 pfam00145, DNA_methylase, C-5 cytosine-specific DN 0.002
>gnl|CDD|238192 cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology Back     alignment and domain information 
 Score = 64.9 bits (159), Expect = 3e-11
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 8/83 (9%)

Query: 561 EEIAPNATGAYQNQENSVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECQFP 620
           +E +P  T +Y     SV+               K  N+R  +P E  +L  FPD+ +FP
Sbjct: 194 DEPSPTLTASYGKGTGSVH-------PTAPDMIGKESNIRRLTPRECARLQGFPDDFEFP 246

Query: 621 PDCSDKARYKLLGNSINVHVVAY 643
              S    Y+ +GNS+ V V   
Sbjct: 247 GK-SVTQAYRQIGNSVPVPVAEA 268

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. Length = 275
>gnl|CDD|238192 cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology Back     alignment and domain information
>gnl|CDD|238192 cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology Back     alignment and domain information
>gnl|CDD|238192 cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology Back     alignment and domain information
>gnl|CDD|215747 pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase Back     alignment and domain information
>gnl|CDD|215747 pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1232
KOG0919|consensus338 100.0
KOG0919|consensus338 100.0
PRK10458467 DNA cytosine methylase; Provisional 100.0
PF00145335 DNA_methylase: C-5 cytosine-specific DNA methylase 99.97
cd00315275 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth 99.96
TIGR00675315 dcm DNA-methyltransferase (dcm). All proteins in t 99.95
COG0270328 Dcm Site-specific DNA methylase [DNA replication, 99.92
PRK10458467 DNA cytosine methylase; Provisional 99.69
PF00145335 DNA_methylase: C-5 cytosine-specific DNA methylase 99.4
cd00315275 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth 99.23
TIGR00675315 dcm DNA-methyltransferase (dcm). All proteins in t 99.17
COG0270328 Dcm Site-specific DNA methylase [DNA replication, 98.92
>KOG0919|consensus Back     alignment and domain information 
Probab=100.00  E-value=1e-53  Score=447.10  Aligned_cols=241  Identities=36%  Similarity=0.560  Sum_probs=192.3

Q ss_pred             hccCCCcccchhhhhc--cCCcEEEEEEccc--CCchHHHHHHHHHhCCCeeEEEEeCCCCCCCCcccceEEEEEEeCCC
Q psy4735         259 ESRTHAPCTVEPYVNC--LHQTMICFINVLK--NQLPYVCTTSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPA  334 (1232)
Q Consensus       259 ~~R~~l~~~~v~~V~a--lrPr~~VfENV~K--~~~~fkeIietLeslGY~VqEfILNPaDFGVPQSR~RYFLIAkRk~l  334 (1232)
                      .+|..+|-++...+-.  .-|..|++|||++  ....-+.++++|++|||+++||||+|++|||||+|.||||||+..- 
T Consensus        93 D~Rs~aflhil~~lP~~q~LPeYIL~ENVkGFE~S~ar~~~i~~lencGf~~~EfiLsPtqfniPNsR~Ryy~iArl~~-  171 (338)
T KOG0919|consen   93 DKRSDAFLHILGLLPECQELPEYILMENVKGFESSQARNQFIESLENCGFHWREFILSPTQFNIPNSRYRYYCIARLGA-  171 (338)
T ss_pred             CchhHHHHHHHhhhhhhhhhhHHHHHhhcccchhhhHHHHHHHHHHhcCchhhheeccccccCCCCcchheeehhhhCC-
Confidence            4555555444444333  4589999999974  6678899999999999999999999999999999999999998863 


Q ss_pred             CCCCCCcccccCCccccccccccccccCCCCccccchhhhccCCCCCcccccccccCHHHHhhhcccceEeeCCCCcccc
Q psy4735         335 AHSSEASFCFETSSELMTELPKLKSKTCNPLLSRMTLHSILDSTDPSDDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNC  414 (1232)
Q Consensus       335 ~~sd~ndF~Fp~psqIl~e~Pk~~sksC~PIlsvkpLsDFLEedVDs~E~~eKYLLPDKLLeRyG~lfDIVtPsSrRScC  414 (1232)
                            +|+|+. +..|..+|.++..- ..--.++.|+||||++.+    +++|+||+++|.||+.+||||.|.++||||
T Consensus       172 ------~F~~~G-~~s~d~~~qFseia-qk~g~Vk~i~d~lE~~~d----~s~ylvp~~vL~k~~l~~DIv~P~~srs~C  239 (338)
T KOG0919|consen  172 ------DFPFAG-GKSWDEMPQFSEIA-QKQGLVKQIADILEENVD----PSDYLVPDDVLTKRVLVMDIVHPAQSRSMC  239 (338)
T ss_pred             ------CCCCCC-CcccccccchHHHH-HhcchHHHHHHHHHhcCC----HHHccCCHHHHHHhHhheeecccccccceE
Confidence                  677753 33566677643100 001136789999999987    679999999999999999999999999999


Q ss_pred             ccccceeeeeeccceeeccCCCchhHHHHHHHhhhcccccccchhhhHHHhhhhhHHHhhhccCCCcccchhhhhhhhhh
Q psy4735         415 FTKAYTHYAEGTGSVLSNLGDMTHIEDIIEKCKHLKQQTDISSTHETKAKKMRLNEEAQTQLSGEGEKKTHDEMVKDAQN  494 (1232)
Q Consensus       415 FTKGYGhYVEGTGSVLQ~~~d~t~~e~~~~~~~~~~~~~~~sS~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~~~~~~~  494 (1232)
                      ||||||||+||||||||..++..    ..             -++.+                                 
T Consensus       240 FTkGYthy~eGtGSilq~~~~i~----~e-------------N~~~s---------------------------------  269 (338)
T KOG0919|consen  240 FTKGYTHYTEGTGSILQLVKEID----TE-------------NQDAS---------------------------------  269 (338)
T ss_pred             eecCccceeecchHHHHHHhhhc----cc-------------chhHH---------------------------------
Confidence            99999999999999998665411    00             00000                                 


Q ss_pred             hhhHHHHHHHHHHhhhhccccccCCCcccccccCCCcccccccccccccccccccccccchhhhhhhccCcccccccccc
Q psy4735         495 RADLEKKILDERVKDAQNRVDLEKNPEETVNDASNSNVITTNITEINQNETKSKHIARTNESEAKREEIAPNATGAYQNQ  574 (1232)
Q Consensus       495 ~~d~ek~~l~~~~k~a~~~~D~~~~~~d~~~d~~~~~~~~~~~~e~~~~e~~s~~~ar~~e~~a~~~~~~~~~~~~~~~~  574 (1232)
                         ++                                                                           
T Consensus       270 ---~~---------------------------------------------------------------------------  271 (338)
T KOG0919|consen  270 ---KS---------------------------------------------------------------------------  271 (338)
T ss_pred             ---HH---------------------------------------------------------------------------
Confidence               00                                                                           


Q ss_pred             cccchhhhhcchhhhhhhhhcCCCcccccHHHHHhhCCCCCCCCCCCCCCHHHHHHHhCCcccHHHHHHHHHHHh
Q psy4735         575 ENSVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECQFPPDCSDKARYKLLGNSINVHVVAYCICLML  649 (1232)
Q Consensus       575 ~n~Vs~tl~~~~e~~~l~~LhplkLRyFTPREvARLQGFPDdF~FP~~IS~KQrYKLLGNSVnV~VVa~Lak~LL  649 (1232)
                               +...+.++..+|.++||||||||+|||||||++|.||++++.+|+||++|||+||+||++|++.|.
T Consensus       272 ---------~~~~~~~~~~l~~l~LRYFTprEvArLmgFPe~fefp~~~T~kq~YRLLGNSiNVkVV~~LIklL~  337 (338)
T KOG0919|consen  272 ---------EKILQQRLDLLHQLRLRYFTPREVARLMGFPENFEFPPETTNKQKYRLLGNSINVKVVGELIKLLT  337 (338)
T ss_pred             ---------HHHHHHHHHHHHHHHhhccCHHHHHHHcCCCcccCCCcchhHHHHHHHhcCcccceeHHHHHHHhc
Confidence                     111234567788899999999999999999999999999999999999999999999999999885

>KOG0919|consensus Back     alignment and domain information
>PRK10458 DNA cytosine methylase; Provisional Back     alignment and domain information
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 Back     alignment and domain information
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology Back     alignment and domain information
>TIGR00675 dcm DNA-methyltransferase (dcm) Back     alignment and domain information
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10458 DNA cytosine methylase; Provisional Back     alignment and domain information
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 Back     alignment and domain information
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology Back     alignment and domain information
>TIGR00675 dcm DNA-methyltransferase (dcm) Back     alignment and domain information
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1232
1g55_A343 Structure Of Human Dnmt2, An Enigmatic Dna Methyltr 4e-20
1g55_A343 Structure Of Human Dnmt2, An Enigmatic Dna Methyltr 4e-11
4h0n_A333 Crystal Structure Of Spodoptera Frugiperda Dnmt2 E2 1e-17
4h0n_A333 Crystal Structure Of Spodoptera Frugiperda Dnmt2 E2 4e-08
4h0n_A333 Crystal Structure Of Spodoptera Frugiperda Dnmt2 E2 1e-07
3qv2_A327 Structure Analysis Of Entamoeba Histolytica Methylt 8e-09
>pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna Methyltransferase Homologue Length = 343 Back     alignment and structure 
Iteration: 1

 Score = 97.4 bits (241), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 303 GFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKSKTC 362
           GF++QEFLLSPT  G+PNSR RY+LIAK             F+   +++ E PK++    
Sbjct: 140 GFQYQEFLLSPTSLGIPNSRLRYFLIAKL------QSEPLPFQAPGQVLMEFPKIEIHRK 193
Query: 363 NPLLSRMTLHSILDSTDPSDDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHY 422
           N   S +++  + D  +   D+  +YL+  K LLR   + DIV      + CFTK Y  Y
Sbjct: 194 NQQDSDLSVKMLKDFLEDDTDV-NQYLLPPKSLLRYALLLDIVQPTXRRSVCFTKGYGSY 252
Query: 423 AEGTGSVLSNLGDMTHIEDIIEKCKHLKQQTDIS 456
            EGTGSVL    D+  +E+I +   +L Q+  I+
Sbjct: 253 IEGTGSVLQTAEDV-QVENIYKSLTNLSQEEQIT 285
>pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna Methyltransferase Homologue Length = 343 Back     alignment and structure
>pdb|4H0N|A Chain A, Crystal Structure Of Spodoptera Frugiperda Dnmt2 E260a/e261a/k263a Mutant Length = 333 Back     alignment and structure
>pdb|4H0N|A Chain A, Crystal Structure Of Spodoptera Frugiperda Dnmt2 E260a/e261a/k263a Mutant Length = 333 Back     alignment and structure
>pdb|4H0N|A Chain A, Crystal Structure Of Spodoptera Frugiperda Dnmt2 E260a/e261a/k263a Mutant Length = 333 Back     alignment and structure
>pdb|3QV2|A Chain A, Structure Analysis Of Entamoeba Histolytica Methyltransferase Ehmeth Length = 327 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1232
1g55_A343 DNA cytosine methyltransferase DNMT2; human DNA me 4e-17
1g55_A343 DNA cytosine methyltransferase DNMT2; human DNA me 1e-13
1g55_A343 DNA cytosine methyltransferase DNMT2; human DNA me 2e-13
1g55_A343 DNA cytosine methyltransferase DNMT2; human DNA me 2e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-14
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
3qv2_A327 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H 3e-12
3qv2_A327 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H 2e-11
3qv2_A327 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H 1e-09
3qv2_A327 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H 2e-09
2qrv_A295 DNA (cytosine-5)-methyltransferase 3A; DNA methylt 5e-06
2qrv_A295 DNA (cytosine-5)-methyltransferase 3A; DNA methylt 8e-06
2qrv_A295 DNA (cytosine-5)-methyltransferase 3A; DNA methylt 1e-05
2c7p_A327 Modification methylase HHAI; DNA methyltransferase 1e-04
2c7p_A327 Modification methylase HHAI; DNA methyltransferase 3e-04
2c7p_A327 Modification methylase HHAI; DNA methyltransferase 5e-04
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 Length = 343 Back     alignment and structure
 Score = 83.3 bits (206), Expect = 4e-17
 Identities = 56/171 (32%), Positives = 82/171 (47%), Gaps = 11/171 (6%)

Query: 297 SMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPK 356
             +   GF++QEFLLSPT  G+PNSR RY+LIAK             F+   +++ E PK
Sbjct: 134 QTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKL------QSEPLPFQAPGQVLMEFPK 187

Query: 357 LKSKTCNPLLSRMTLHSILDSTDPSDDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFT 416
           ++    N   S +++  + D  +   D+  +YL+  K LLR   + DIV      + CFT
Sbjct: 188 IEIHRKNQQDSDLSVKMLKDFLEDDTDVN-QYLLPPKSLLRYALLLDIVQPTCRRSVCFT 246

Query: 417 KAYTHYAEGTGSVLSNLGDMTHIEDIIEKCKHLKQQTDISSTHETKAKKMR 467
           K Y  Y EGTGSVL    D+     +    K L   +      +    K+R
Sbjct: 247 KGYGSYIEGTGSVLQTAEDV----QVENIYKSLTNLSQEEQITKLLILKLR 293
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 Length = 343 Back     alignment and structure
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 Length = 343 Back     alignment and structure
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 Length = 343 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} Length = 327 Back     alignment and structure
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} Length = 327 Back     alignment and structure
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} Length = 327 Back     alignment and structure
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} Length = 327 Back     alignment and structure
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} Length = 295 Back     alignment and structure
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} Length = 295 Back     alignment and structure
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} Length = 295 Back     alignment and structure
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... Length = 327 Back     alignment and structure
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... Length = 327 Back     alignment and structure
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... Length = 327 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1232
4h0n_A333 DNMT2; SAH binding, transferase; HET: SAH; 2.71A { 100.0
3qv2_A327 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H 100.0
1g55_A343 DNA cytosine methyltransferase DNMT2; human DNA me 100.0
3me5_A482 Cytosine-specific methyltransferase; structural ge 99.97
3ubt_Y331 Modification methylase HAEIII; protein-DNA complex 99.96
4dkj_A403 Cytosine-specific methyltransferase; CG-specificit 99.96
2c7p_A327 Modification methylase HHAI; DNA methyltransferase 99.96
4ft4_B784 DNA (cytosine-5)-methyltransferase 1; chromodomain 99.95
4h0n_A333 DNMT2; SAH binding, transferase; HET: SAH; 2.71A { 99.95
3g7u_A376 Cytosine-specific methyltransferase; DNA-binding, 99.94
3qv2_A327 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H 99.92
3swr_A1002 DNA (cytosine-5)-methyltransferase 1; epigenetics, 99.88
3av4_A1330 DNA (cytosine-5)-methyltransferase 1; CXXC-type zi 99.87
2qrv_A295 DNA (cytosine-5)-methyltransferase 3A; DNA methylt 99.86
1g55_A343 DNA cytosine methyltransferase DNMT2; human DNA me 99.86
3me5_A482 Cytosine-specific methyltransferase; structural ge 99.5
3ubt_Y331 Modification methylase HAEIII; protein-DNA complex 99.42
4dkj_A403 Cytosine-specific methyltransferase; CG-specificit 99.37
2qrv_A295 DNA (cytosine-5)-methyltransferase 3A; DNA methylt 99.32
2c7p_A327 Modification methylase HHAI; DNA methyltransferase 99.32
4ft4_B784 DNA (cytosine-5)-methyltransferase 1; chromodomain 99.27
3g7u_A376 Cytosine-specific methyltransferase; DNA-binding, 99.17
3av4_A1330 DNA (cytosine-5)-methyltransferase 1; CXXC-type zi 98.88
3swr_A1002 DNA (cytosine-5)-methyltransferase 1; epigenetics, 98.72
2pv0_B386 DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, 98.22
2qrv_B230 DNA (cytosine-5)-methyltransferase 3-like; DNA met 98.01
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} Back     alignment and structure
Probab=100.00  E-value=1.2e-47  Score=408.60  Aligned_cols=238  Identities=35%  Similarity=0.568  Sum_probs=199.8

Q ss_pred             hccCCCcccchhhhhccC-CcEEEEEEcc--cCCchHHHHHHHHHhCCCeeEEEEeCCCCCCCCcccceEEEEEEeCCCC
Q psy4735         259 ESRTHAPCTVEPYVNCLH-QTMICFINVL--KNQLPYVCTTSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAA  335 (1232)
Q Consensus       259 ~~R~~l~~~~v~~V~alr-Pr~~VfENV~--K~~~~fkeIietLeslGY~VqEfILNPaDFGVPQSR~RYFLIAkRk~l~  335 (1232)
                      ..|++||.+|+++|+.++ |++|++|||.  .++..++.|++.|+++||.+.+++|||.+|||||+|+|+||||+|.+. 
T Consensus        93 d~r~~L~~~~~r~i~~~~~P~~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~~-  171 (333)
T 4h0n_A           93 DPRTNSFLYLIGILDQLDNVDYILMENVKGFENSTVRNLFIDKLKECNFIYQEFLLCPSTVGVPNSRLRYYCTARRNNL-  171 (333)
T ss_dssp             CTTSCCHHHHHHHGGGCTTCCEEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEEEECTTTTTCSCCCCEEEEEEEETTS-
T ss_pred             CcccccHHHHHHHHHHhcCCCEEEEecchhhhhhhHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEeCCC-
Confidence            469999999999999997 9999999995  466789999999999999999999999999999999999999999997 


Q ss_pred             CCCCCcccccCCccccccccccccccCCCCccccchhhhccCCCCCcccccccccCHHHHhhhcccceEeeCCCCccccc
Q psy4735         336 HSSEASFCFETSSELMTELPKLKSKTCNPLLSRMTLHSILDSTDPSDDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCF  415 (1232)
Q Consensus       336 ~sd~ndF~Fp~psqIl~e~Pk~~sksC~PIlsvkpLsDFLEedVDs~E~~eKYLLPDKLLeRyG~lfDIVtPsSrRScCF  415 (1232)
                           +|.|+.+..++..+|...       ....+|+||||++++     ++|++|++++ ||+..|||++|++++++||
T Consensus       172 -----~~~f~~~~~~~~~~P~~~-------~~~~~l~d~Le~~~~-----~~y~~~~~~~-~~~~~~d~~~~~~~~~~~~  233 (333)
T 4h0n_A          172 -----TWPFKRRDEIITRLPKDF-------GVPHSLESIIEEDVD-----EKFLVPEKML-RCAKVFDICYKTSKRSCCF  233 (333)
T ss_dssp             -----CCCSCCCSSCBSSCSSCC-------CSCCCSSTTCCSSCC-----GGGBCCHHHH-TTGGGCCEECTTCSCCCCC
T ss_pred             -----CCCCCcccchhhhCCCCc-------cccccHHHHhccCCc-----ccccCCHHHH-HHHHHhccCChhhhhhhhh
Confidence                 678876666777777521       124579999998754     6899999999 9999999999999999999


Q ss_pred             cccceeeeeeccceeeccCCCchhHHHHHHHhhhcccccccchhhhHHHhhhhhHHHhhhccCCCcccchhhhhhhhhhh
Q psy4735         416 TKAYTHYAEGTGSVLSNLGDMTHIEDIIEKCKHLKQQTDISSTHETKAKKMRLNEEAQTQLSGEGEKKTHDEMVKDAQNR  495 (1232)
Q Consensus       416 TKGYGhYVEGTGSVLQ~~~d~t~~e~~~~~~~~~~~~~~~sS~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~~~~~~~~  495 (1232)
                      ||||++|++||||+++...+    +....+++.+.                                             
T Consensus       234 ~k~~~~~~~g~gs~~~~~~~----~~~~~~~~~~~---------------------------------------------  264 (333)
T 4h0n_A          234 TKAYTHYADGTGSIFTDKPR----EVVQKCYAAAA---------------------------------------------  264 (333)
T ss_dssp             CTTBTTBSSSSCCEECSSCH----HHHHHHHHHGG---------------------------------------------
T ss_pred             ccccceEEeccCceeccccc----cchhhhhcccc---------------------------------------------
Confidence            99999999999999975433    12222222111                                             


Q ss_pred             hhHHHHHHHHHHhhhhccccccCCCcccccccCCCcccccccccccccccccccccccchhhhhhhccCccccccccccc
Q psy4735         496 ADLEKKILDERVKDAQNRVDLEKNPEETVNDASNSNVITTNITEINQNETKSKHIARTNESEAKREEIAPNATGAYQNQE  575 (1232)
Q Consensus       496 ~d~ek~~l~~~~k~a~~~~D~~~~~~d~~~d~~~~~~~~~~~~e~~~~e~~s~~~ar~~e~~a~~~~~~~~~~~~~~~~~  575 (1232)
                                                 +                   .                                
T Consensus       265 ---------------------------~-------------------~--------------------------------  266 (333)
T 4h0n_A          265 ---------------------------Q-------------------N--------------------------------  266 (333)
T ss_dssp             ---------------------------G-------------------S--------------------------------
T ss_pred             ---------------------------c-------------------C--------------------------------
Confidence                                       0                   0                                


Q ss_pred             ccchhhhhcchhhhhhhhhcCCCcccccHHHHHhhCCCCCCCCCCCCCCHHHHHHHhCCcccHHHHHHHHHHHhc
Q psy4735         576 NSVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECQFPPDCSDKARYKLLGNSINVHVVAYCICLMLC  650 (1232)
Q Consensus       576 n~Vs~tl~~~~e~~~l~~LhplkLRyFTPREvARLQGFPDdF~FP~~IS~KQrYKLLGNSVnV~VVa~Lak~LL~  650 (1232)
                              ..+..+.+..+++.++|+||||||+|||||||+|.||..+|++|+|+|+||||+|+||++|++.|++
T Consensus       267 --------~~G~~~~~~~~~~~~~R~lt~~E~~rl~gfp~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~~  333 (333)
T 4h0n_A          267 --------EIGGEKFVELFKELKLRYFTPKEVLMIMCFPKSYNLPTNISMKQCYRLLGNSVNVKVISELLKILFE  333 (333)
T ss_dssp             --------CTTCHHHHHHHHTTTCBCCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHTSCCHHHHHHHHHHHHC
T ss_pred             --------CCCcccceeeccCCCcCCCCHHHHHHhCCCCccccCCCCCCHHHHHHHhCCccCHHHHHHHHHHHhC
Confidence                    0011223445678899999999999999999999999999999999999999999999999999974
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} Back     alignment and structure
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 Back     alignment and structure
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A Back     alignment and structure
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* Back     alignment and structure
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} Back     alignment and structure
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... Back     alignment and structure
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* Back     alignment and structure
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} Back     alignment and structure
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} Back     alignment and structure
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} Back     alignment and structure
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* Back     alignment and structure
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* Back     alignment and structure
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} Back     alignment and structure
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 Back     alignment and structure
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A Back     alignment and structure
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* Back     alignment and structure
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} Back     alignment and structure
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} Back     alignment and structure
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... Back     alignment and structure
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* Back     alignment and structure
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} Back     alignment and structure
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* Back     alignment and structure
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* Back     alignment and structure
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* Back     alignment and structure
>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1232
d1g55a_343 c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 4e-11
d1g55a_343 c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 4e-11
d1g55a_343 c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 3e-10
d2c7pa1327 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilu 2e-07
d2c7pa1327 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilu 5e-07
d2c7pa1327 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilu 9e-07
d1dcta_324 c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus a 3e-07
d1dcta_324 c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus a 2e-06
d1dcta_324 c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus a 6e-06
>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} Length = 343 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.9 bits (154), Expect = 4e-11
 Identities = 38/128 (29%), Positives = 58/128 (45%)

Query: 516 LEKNPEETVNDASNSNVITTNITEINQNETKSKHIARTNESEAKREEIAPNATGAYQNQE 575
           LE + +         +++   +       T  + +  T    +  E        A   Q 
Sbjct: 209 LEDDTDVNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDVQV 268

Query: 576 NSVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECQFPPDCSDKARYKLLGNS 635
            ++   L N ++   + +L  L LRYF+P EI  L+ FP E  FP   + K RY+LLGNS
Sbjct: 269 ENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNS 328

Query: 636 INVHVVAY 643
           +NVHVVA 
Sbjct: 329 LNVHVVAK 336
>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} Length = 343 Back     information, alignment and structure
>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} Length = 343 Back     information, alignment and structure
>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} Length = 327 Back     information, alignment and structure
>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} Length = 327 Back     information, alignment and structure
>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} Length = 327 Back     information, alignment and structure
>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} Length = 324 Back     information, alignment and structure
>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} Length = 324 Back     information, alignment and structure
>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} Length = 324 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1232
d1g55a_343 DNMT2 {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2c7pa1327 DNA methylase HhaI {Haemophilus haemolyticus [TaxI 99.97
d1dcta_324 DNA methylase HaeIII {Haemophilus aegyptius [TaxId 99.96
d1g55a_343 DNMT2 {Human (Homo sapiens) [TaxId: 9606]} 99.8
d1dcta_324 DNA methylase HaeIII {Haemophilus aegyptius [TaxId 99.46
d2c7pa1327 DNA methylase HhaI {Haemophilus haemolyticus [TaxI 99.4
>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-41  Score=337.48  Aligned_cols=246  Identities=38%  Similarity=0.580  Sum_probs=189.3

Q ss_pred             HhccCCCcccchhhhhcc--CCcEEEEEEcc--cCCchHHHHHHHHHhCCCeeEEEEeCCCCCCCCcccceEEEEEEeCC
Q psy4735         258 VESRTHAPCTVEPYVNCL--HQTMICFINVL--KNQLPYVCTTSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSP  333 (1232)
Q Consensus       258 ~~~R~~l~~~~v~~V~al--rPr~~VfENV~--K~~~~fkeIietLeslGY~VqEfILNPaDFGVPQSR~RYFLIAkRk~  333 (1232)
                      -..|++||..++++|+.+  +|++|++|||.  .++..++.|++.|+++||.+.+++||+.+|||||+|+|+|+||.|++
T Consensus        91 ~d~r~~l~~~~~~~i~~~~~kPk~~i~ENV~~l~~~~~~~~i~~~l~~~GY~v~~~vlna~dyGvPQ~R~Rvfivg~r~~  170 (343)
T d1g55a_          91 TDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQS  170 (343)
T ss_dssp             -----CHHHHHHHHGGGCSSCCSEEEEEEETTGGGSHHHHHHHHHHHHTTEEEEEEEECGGGGTCSCCCCEEEEEEEESS
T ss_pred             ccccccccchhhhhHhhhcCCCceeeeeccCCcccchhhHHHHhhhhccccccceeeeeccccCCcccceeEEEEEEeCC
Confidence            467999999999999987  79999999994  57778999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCcccccCCcccccccccccc--ccC-CCCccccchhhhccCCCCCcccccccccCHHHHhhhcccceEeeCCCC
Q psy4735         334 AAHSSEASFCFETSSELMTELPKLKS--KTC-NPLLSRMTLHSILDSTDPSDDLYRRYLVSDKDLLRRFHVFDIVNGKAS  410 (1232)
Q Consensus       334 l~~sd~ndF~Fp~psqIl~e~Pk~~s--ksC-~PIlsvkpLsDFLEedVDs~E~~eKYLLPDKLLeRyG~lfDIVtPsSr  410 (1232)
                      .      .+.|+.+......+|....  ... ........+.++|+...+    ..+|.++.+...+++..++.+.+.++
T Consensus       171 ~------~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (343)
T d1g55a_         171 E------PLPFQAPGQVLMEFPKIEIHRKNQQDSDLSVKMLKDFLEDDTD----VNQYLLPPKSLLRYALLLDIVQPTCR  240 (343)
T ss_dssp             S------CCTTCCTTCEESSCCC------------CCCCCGGGGCCTTCC----HHHHBCCHHHHHHHGGGCCEECTTCS
T ss_pred             c------cccCCCcccccccCCcccccccccccccccccchhhhcccccc----hhhcccChHhhhhhhhhccccccccc
Confidence            6      2333333323333443210  000 012345678999987765    47899999999999999999999999


Q ss_pred             ccccccccceeeeeeccceeeccCCCchhHHHHHHHhhhcccccccchhhhHHHhhhhhHHHhhhccCCCcccchhhhhh
Q psy4735         411 STNCFTKAYTHYAEGTGSVLSNLGDMTHIEDIIEKCKHLKQQTDISSTHETKAKKMRLNEEAQTQLSGEGEKKTHDEMVK  490 (1232)
Q Consensus       411 RScCFTKGYGhYVEGTGSVLQ~~~d~t~~e~~~~~~~~~~~~~~~sS~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~~~  490 (1232)
                      ++.||+|+|+++++|+|+++....+...    ...+.                                           
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-------------------------------------------  273 (343)
T d1g55a_         241 RSVCFTKGYGSYIEGTGSVLQTAEDVQV----ENIYK-------------------------------------------  273 (343)
T ss_dssp             CCCCCCTTTTTCCTTSCCEEECCSSCCH----HHHHH-------------------------------------------
T ss_pred             ccchhcccccccccCCCccccccccccc----CCccc-------------------------------------------
Confidence            9999999999999999999875544110    00000                                           


Q ss_pred             hhhhhhhHHHHHHHHHHhhhhccccccCCCcccccccCCCcccccccccccccccccccccccchhhhhhhccCcccccc
Q psy4735         491 DAQNRADLEKKILDERVKDAQNRVDLEKNPEETVNDASNSNVITTNITEINQNETKSKHIARTNESEAKREEIAPNATGA  570 (1232)
Q Consensus       491 ~~~~~~d~ek~~l~~~~k~a~~~~D~~~~~~d~~~d~~~~~~~~~~~~e~~~~e~~s~~~ar~~e~~a~~~~~~~~~~~~  570 (1232)
                                                                                                      
T Consensus       274 --------------------------------------------------------------------------------  273 (343)
T d1g55a_         274 --------------------------------------------------------------------------------  273 (343)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccchhhhhcchhhhhhhhhcCCCcccccHHHHHhhCCCCCCCCCCCCCCHHHHHHHhCCcccHHHHHHHHHHHhc
Q psy4735         571 YQNQENSVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECQFPPDCSDKARYKLLGNSINVHVVAYCICLMLC  650 (1232)
Q Consensus       571 ~~~~~n~Vs~tl~~~~e~~~l~~LhplkLRyFTPREvARLQGFPDdF~FP~~IS~KQrYKLLGNSVnV~VVa~Lak~LL~  650 (1232)
                                ++...........+|+.++|+|||||+||||||||+|.||..+|.+|+|+||||||+|+|+++|++.|++
T Consensus       274 ----------~~~~~~~~~~~~~~~~~~~R~LT~rE~arLQgFPd~f~~~~~~s~~~~ykqiGNaVp~~v~~~i~k~l~e  343 (343)
T d1g55a_         274 ----------SLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILYE  343 (343)
T ss_dssp             ----------TTTTCCHHHHHHHHHTTCEECCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHHSCCHHHHHHHHHHHHC
T ss_pred             ----------ccccCCCCCCcccCCCCCCcCCCHHHHHHhCCCCCCCEECCCCCHHHHhhhEeCCccHHHHHHHHHHhcC
Confidence                      0000011122345788899999999999999999999999889999999999999999999999999974
>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} Back     information, alignment and structure
>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} Back     information, alignment and structure
>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} Back     information, alignment and structure
>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} Back     information, alignment and structure