Psyllid ID: psy4738
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1188 | 2.2.26 [Sep-21-2011] | |||||||
| Q9V7S5 | 529 | Putative inorganic phosph | no | N/A | 0.340 | 0.765 | 0.396 | 1e-87 | |
| O61369 | 483 | Putative inorganic phosph | N/A | N/A | 0.322 | 0.792 | 0.403 | 5e-85 | |
| Q9NRA2 | 495 | Sialin OS=Homo sapiens GN | yes | N/A | 0.329 | 0.791 | 0.376 | 9e-78 | |
| Q9MZD1 | 495 | Sialin OS=Ovis aries GN=S | N/A | N/A | 0.323 | 0.775 | 0.364 | 2e-75 | |
| Q8BN82 | 495 | Sialin OS=Mus musculus GN | yes | N/A | 0.323 | 0.775 | 0.357 | 3e-71 | |
| Q03567 | 493 | Uncharacterized transport | yes | N/A | 0.342 | 0.825 | 0.338 | 2e-63 | |
| Q62634 | 560 | Vesicular glutamate trans | no | N/A | 0.314 | 0.667 | 0.300 | 2e-60 | |
| Q3TXX4 | 560 | Vesicular glutamate trans | no | N/A | 0.314 | 0.667 | 0.300 | 2e-60 | |
| A4FV52 | 560 | Vesicular glutamate trans | no | N/A | 0.314 | 0.667 | 0.300 | 4e-60 | |
| Q9P2U7 | 560 | Vesicular glutamate trans | no | N/A | 0.314 | 0.667 | 0.300 | 4e-60 |
| >sp|Q9V7S5|PICO_DROME Putative inorganic phosphate cotransporter OS=Drosophila melanogaster GN=Picot PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 325 bits (833), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 173/436 (39%), Positives = 254/436 (58%), Gaps = 31/436 (7%)
Query: 3 QGCISQRYILGFMGFLAVANAYAMRGCLSLAITEMV--VVHHKGPVKIDPNGCPGDLDSR 60
Q C + RY + FM FL +ANAY MR +S+AI MV G + + C GD D
Sbjct: 34 QRCFATRYFVTFMLFLGMANAYVMRTNMSVAIVAMVNHTAIKSGEAEEYDDEC-GDRDIP 92
Query: 61 NHTNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLL 120
+ D EF W QG ILS+F++GYVI IP G+LA+K+G LG+G+L ++F L
Sbjct: 93 IDDSQDGEFAWSSALQGYILSSFFYGYVITQIPFGILAKKYGSLRFLGYGMLINSVFAFL 152
Query: 121 TPFAARQSANW-LIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTV 179
P AAR W L A+RF +GLGEG P + +LA+W+PP ER ++G+ V+AG Q GT+
Sbjct: 153 VPVAARGGGVWGLCAVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAVYAGAQFGTI 212
Query: 180 FSSFLSGFLLKYT-DGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLAD 238
S LSG L +Y DG WP IFY+FGI+G +W +A+ + DP+SHP I +REK+Y+ D
Sbjct: 213 ISMPLSGLLAEYGFDGGWPSIFYVFGIVGTVWSIAFLIFVHEDPSSHPTIDEREKKYIND 272
Query: 239 TI-------------GCLARN---------KIGHDWGLFMISADLPKYMKSVMKFSIAKN 276
++ + ++ +GH++G + +LP YMK V++FS+ N
Sbjct: 273 SLWGTDVVKSPPIPFKAIIKSLPFYAILFAHMGHNYGYETLMTELPTYMKQVLRFSLKSN 332
Query: 277 GVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGC 336
G+LSSLP+L MWL ++ +D+++S FS T RK+ +I GP +I ASY GC
Sbjct: 333 GLLSSLPYLAMWLFSMFISVVADWMISSKRFSHTATRKLINSIGQYGPGVALIAASYTGC 392
Query: 337 DQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGIL 396
D+ L + + T+G+ G Y K+N LDL+P +AG LM+I N ++G+++P G L
Sbjct: 393 DRALTLAILTIGVGLNGGIYSGFKINHLDLTPRFAGFLMSITNCSANLAGLLAPIAAGHL 452
Query: 397 VPNNGVLSSLPFLLMW 412
+ + S P + W
Sbjct: 453 ISD----PSKPMMGQW 464
|
May be an inorganic phosphate cotransporter. Drosophila melanogaster (taxid: 7227) |
| >sp|O61369|PICO_DROAN Putative inorganic phosphate cotransporter OS=Drosophila ananassae GN=Picot PE=3 SV=1 | Back alignment and function description |
|---|
Score = 317 bits (811), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 166/411 (40%), Positives = 247/411 (60%), Gaps = 28/411 (6%)
Query: 15 MGFLAVANAYAMRGCLSLAITEMV--VVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWD 72
M FL +ANAY MR +S+AI MV G + D + C GD D + D EF W+
Sbjct: 1 MLFLGMANAYVMRTNMSVAIVAMVNHTAIKSGEEEYD-DEC-GDRDIPIDDSQDGEFPWN 58
Query: 73 EKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANW- 131
QG ILS+F++GYVI IP G+LA+K+G LG+G+L ++F L P AAR+ W
Sbjct: 59 AALQGYILSSFFYGYVITQIPFGILAKKYGSLRFLGYGMLINSVFAFLVPVAAREGGVWG 118
Query: 132 LIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY 191
L A+RF +GLGEG P + +LA+W+PP ER ++G+ V+AG Q GT+ S LSG L +Y
Sbjct: 119 LCAVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAVYAGAQFGTIISMPLSGLLAEY 178
Query: 192 T-DGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTI---------- 240
DG WP IFY+FGI+G +W +A+ Y DP++HP I +REK+Y+ +++
Sbjct: 179 GFDGGWPSIFYVFGIVGTVWSIAFLIFVYEDPSTHPKIDEREKKYINESLWGTDVIKSPP 238
Query: 241 ---GCLARN---------KIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMW 288
+ ++ +GH++G + +LP YMK V++FS+ NG+LSSLP+L MW
Sbjct: 239 IPFKSIVKSLPFYAILFAHMGHNYGYETLMTELPTYMKQVLRFSLKSNGLLSSLPYLAMW 298
Query: 289 LTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVG 348
L ++ +D+++S FS+T RKI +I GP +I ASY GCD+ L + + T+G
Sbjct: 299 LLSMFISVIADWMISSKRFSLTATRKIINSIGQYGPGLALIAASYTGCDRALTLAILTIG 358
Query: 349 MAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPN 399
+ G Y K+N LDL+P +AG LM+I N ++G+++P G L+ +
Sbjct: 359 VGLNGGIYSGFKINHLDLTPRFAGFLMSITNCSANLAGLLAPIAAGNLISD 409
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May be an inorganic phosphate cotransporter. Drosophila ananassae (taxid: 7217) |
| >sp|Q9NRA2|S17A5_HUMAN Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 292 bits (748), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 160/425 (37%), Positives = 228/425 (53%), Gaps = 33/425 (7%)
Query: 5 CISQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLD--SRNH 62
C S RY L + F YA+R LS+A+ +MV + CP +H
Sbjct: 35 CCSARYNLAILAFFGFFIVYALRVNLSVALVDMVDSNTTLEDNRTSKACPEHSAPIKVHH 94
Query: 63 TNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTP 122
++ WD +TQG IL +F++GY+I IPGG +A K GGK LGFGIL TA+ TL TP
Sbjct: 95 NQTGKKYQWDAETQGWILGSFFYGYIITQIPGGYVASKIGGKMLLGFGILGTAVLTLFTP 154
Query: 123 FAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSS 182
AA LI LR EGLGEG TFPA++ + + W PP ER K+ S +AG Q+GTV S
Sbjct: 155 IAADLGVGPLIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISL 214
Query: 183 FLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGC 242
LSG + Y +W +FY FG +G+ WF+ W +L + P H IS EKEY+ ++
Sbjct: 215 PLSGIICYYM--NWTYVFYFFGTIGIFWFLLWIWLVSDTPQKHKRISHYEKEYILSSL-- 270
Query: 243 LARNKI-------------------------GHDWGLFMISADLPKYMKSVMKFSIAKNG 277
RN++ ++W + + LP YMK +++F++ +NG
Sbjct: 271 --RNQLSSQKSVPWVPILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENG 328
Query: 278 VLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCD 337
LSSLP+L WL I++G +D L +K FS +R+IF+ I +GPA ++ A + GCD
Sbjct: 329 FLSSLPYLGSWLCMILSGQAADNLRAKWNFSTLCVRRIFSLIGMIGPAVFLVAAGFIGCD 388
Query: 338 QILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILV 397
L V T+ GF +N LD++P+YAG L+ I N I G++ P + L
Sbjct: 389 YSLAVAFLTISTTLGGFCSSGFSINHLDIAPSYAGILLGITNTFATIPGMVGPVIAKSLT 448
Query: 398 PNNGV 402
P+N V
Sbjct: 449 PDNTV 453
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Primary solute translocator for anionic substances; particularly it is a free sialic acid transporter in the lysosomes. Homo sapiens (taxid: 9606) |
| >sp|Q9MZD1|S17A5_SHEEP Sialin OS=Ovis aries GN=SLC17A5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (728), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 158/433 (36%), Positives = 232/433 (53%), Gaps = 49/433 (11%)
Query: 5 CISQRYILGFMGFLAVANAYAMRGCLSLAITEMV--------------VVHHKGPVKIDP 50
C S RY L F+ F Y++R LS+A+ +MV H P+K+
Sbjct: 35 CCSARYNLAFLSFFGFFVLYSLRVNLSVALVDMVDSNTTAKDNRTSYECAEHSAPIKVL- 93
Query: 51 NGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFG 110
H ++ WD +TQG IL +F++GY+I IPGG +A + GGK LGFG
Sbjct: 94 -----------HNQTGKKYRWDAETQGWILGSFFYGYIITQIPGGYVASRSGGKLLLGFG 142
Query: 111 ILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 170
I +TAIFTL TP AA L+ALR EGLGEG T+PA++ + + W PP ER K+ S
Sbjct: 143 IFATAIFTLFTPLAADFGVGALVALRALEGLGEGVTYPAMHAMWSSWAPPLERSKLLSIS 202
Query: 171 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQ 230
+AG Q+GTV S LSG + Y +W +FY FGI+G++WF+ W L + P +H I+
Sbjct: 203 YAGAQLGTVVSLPLSGVICYYM--NWTYVFYFFGIVGIIWFILWICLVSDTPETHKTITP 260
Query: 231 REKEYLADTI-GCLARNK--------------------IGHDWGLFMISADLPKYMKSVM 269
EKEY+ ++ L+ K ++W + + LP YMK V+
Sbjct: 261 YEKEYILSSLKNQLSSQKSVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVL 320
Query: 270 KFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVI 329
+F+I +NG LS++P+L WL I++G +D L ++ FS +R++F+ I +GPA ++
Sbjct: 321 RFNIQENGFLSAVPYLGCWLCMILSGQAADNLRARWNFSTLWVRRVFSLIGMIGPAIFLV 380
Query: 330 LASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIIS 389
A + GCD L V T+ GF +N LD++P+YAG L+ I N I G+I
Sbjct: 381 AAGFIGCDYSLAVAFLTISTTLGGFCSSGFSINHLDIAPSYAGILLGITNTFATIPGMIG 440
Query: 390 PYLIGILVPNNGV 402
P + L P N +
Sbjct: 441 PIIARSLTPENTI 453
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Primary solute translocator for anionic substances; particularly it is a free sialic acid transporter in the lysosomes (Probable). Receptor for CM101, a polysaccharide produced by group B Streptococcus with antipathoangiogenic properties. Ovis aries (taxid: 9940) |
| >sp|Q8BN82|S17A5_MOUSE Sialin OS=Mus musculus GN=Slc17a5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 271 bits (692), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 155/433 (35%), Positives = 232/433 (53%), Gaps = 49/433 (11%)
Query: 5 CISQRYILGFMGFLAVANAYAMRGCLSLAITEMV--------------VVHHKGPVKIDP 50
C S RY L + F YA+R LS+A+ +MV H P+K+
Sbjct: 35 CCSARYNLAILAFCGFFVLYALRVNLSVALVDMVDSNTTLTDNRTSKECAEHSAPIKV-- 92
Query: 51 NGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFG 110
+H + ++ WD +TQG IL +F++GY++ IPGG +A + GGK LG G
Sbjct: 93 ----------HHNHTGKKYKWDAETQGWILGSFFYGYIVTQIPGGYIASRVGGKLLLGLG 142
Query: 111 ILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 170
IL T++FTL TP AA L+ LR EGLGEG TFPA++ + + W PP ER K+ +
Sbjct: 143 ILGTSVFTLFTPLAADLGVVTLVVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLTIS 202
Query: 171 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQ 230
+AG Q+GTV S LSG + Y +W +FYLFGI+G++WF+ W ++ + P +H IS
Sbjct: 203 YAGAQLGTVISLPLSGIICYYM--NWTYVFYLFGIVGIVWFILWMWIVSDTPETHKTISH 260
Query: 231 REKEYLADTI-GCLARNKI--------------------GHDWGLFMISADLPKYMKSVM 269
EKEY+ ++ L+ K+ ++W + + LP YMK ++
Sbjct: 261 YEKEYIVSSLKNQLSSQKVVPWGSILKSLPLWAIVVAHFSYNWSFYTLLTLLPTYMKEIL 320
Query: 270 KFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVI 329
+F++ +NG LS+LP+ WL I+ G +DYL K FS +R+IF+ + VGPA ++
Sbjct: 321 RFNVQENGFLSALPYFGCWLCMILCGQAADYLRVKWNFSTISVRRIFSLVGMVGPAVFLV 380
Query: 330 LASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIIS 389
A + GCD L V T+ GF +N LD++P+YAG L+ I N I G+
Sbjct: 381 AAGFIGCDYSLAVAFLTISTTLGGFASSGFSINHLDIAPSYAGILLGITNTFATIPGMTG 440
Query: 390 PYLIGILVPNNGV 402
P + L P+N +
Sbjct: 441 PIIAKSLTPDNTI 453
|
Primary solute translocator for anionic substances; particularly it is a free sialic acid transporter in the lysosomes. Mus musculus (taxid: 10090) |
| >sp|Q03567|YLD2_CAEEL Uncharacterized transporter C38C10.2 OS=Caenorhabditis elegans GN=C38C10.2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 244 bits (624), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 148/437 (33%), Positives = 224/437 (51%), Gaps = 30/437 (6%)
Query: 7 SQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDS-RNHTNP 65
S R+ L + F Y MR +S A+ MV + + C ++ ++++
Sbjct: 13 STRFALSLVMFFGCLVTYMMRTNMSFAVVCMVNENKTDTGVEKVSRCGKEMTPVESNSSV 72
Query: 66 DNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA 125
EFDWD++T G++LS+F++GY+ I GG LA ++GGK + IL +A+ TLL P AA
Sbjct: 73 IGEFDWDKQTTGMVLSSFFYGYIGSQIIGGHLASRYGGKRVVFVTILGSALLTLLNPVAA 132
Query: 126 RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLS 185
R S L LR G +G TFPA++T+ + W PP E + +AG QIG V LS
Sbjct: 133 RTSEYALAILRAAIGFLQGATFPAMHTMWSVWGPPLELSVLTGVTYAGAQIGNVIVLPLS 192
Query: 186 GFLLKYT-DGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLA 244
GFL +Y DG WP IFY+ G+ GVLW W ++ + PA+HP I+ EK+Y+ +
Sbjct: 193 GFLCEYGFDGGWPSIFYIIGVFGVLWTAVWWYVSSDKPATHPRITPEEKQYIVTAVEASM 252
Query: 245 RNKIGH-------------------------DWGLFMISADLPKYMKSVMKFSIAKNGVL 279
G DWG + + LP ++K V+ +++ G +
Sbjct: 253 GKDTGKVPSTPWIKILTSPAVWACWAGHFAGDWGAYTMLVSLPSFLKDVLGLNLSSLGAV 312
Query: 280 SSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQ- 338
+S+P++ +L G +D L SK I S R+ +A +G ++ + Y GC Q
Sbjct: 313 ASIPYIAYFLAINAGGVLADTLRSKGILSTLNTRRAAMLVALIGQGIFLVASGYCGCGQD 372
Query: 339 ILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVP 398
+LV+ T GMA G Y VN L+++P ++GT+M N I A++GIISP + L P
Sbjct: 373 VLVIIFITCGMAISGLQYAGFVVNYLEIAPPFSGTVMGTGNTISALAGIISPAVSSYLTP 432
Query: 399 NNGVLSSLPFLLMWLTA 415
NG +L WLTA
Sbjct: 433 -NGTQEEWQMVL-WLTA 447
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|Q62634|VGLU1_RAT Vesicular glutamate transporter 1 OS=Rattus norvegicus GN=Slc17a7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 235 bits (599), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/422 (30%), Positives = 211/422 (50%), Gaps = 48/422 (11%)
Query: 8 QRYILGFMGFLAVANAYAMRGCLSLAITEMV---VVHHKGPVKIDPNGCPGDLDSRNHTN 64
+RYI+ M L ++ +R L +AI MV H G V +
Sbjct: 61 RRYIIAIMSGLGFCISFGIRCNLGVAIVSMVNNSTTHRGGHVVVQ--------------- 105
Query: 65 PDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA 124
+F+WD +T GLI +F+WGY++ IPGG + QKF GF I++T+ +L P A
Sbjct: 106 -KAQFNWDPETVGLIHGSFFWGYIVTQIPGGFICQKFAANRVFGFAIVATSTLNMLIPSA 164
Query: 125 ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFL 184
AR +I +R +GL EG T+PA + + ++W PP ER ++ + F G+ G V + L
Sbjct: 165 ARVHYGCVIFVRILQGLVEGVTYPACHGIWSKWAPPLERSRLATTAFCGSYAGAVVAMPL 224
Query: 185 SGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLA 244
+G L++Y+ W +FY++G G+ W++ W + Y PA HP IS+ E++Y+ D IG A
Sbjct: 225 AGVLVQYS--GWSSVFYVYGSFGIFWYLFWLLVSYESPALHPSISEEERKYIEDAIGESA 282
Query: 245 R--------------------------NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGV 278
+ W +++ P Y + V F I+K G+
Sbjct: 283 KLMNPVTKFNTPWRRFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEISKVGL 342
Query: 279 LSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQ 338
+S+LP L+M + + G +D+L S+ I S T +RK+ A+ +++ Y+
Sbjct: 343 VSALPHLVMTIIVPIGGQIADFLRSRHIMSTTNVRKLMNCGGFGMEATLLLVVGYSHSKG 402
Query: 339 ILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVP 398
+ ++ + + F GF VN LD++P YA LM I NG+G +SG++ P ++G +
Sbjct: 403 V-AISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTK 461
Query: 399 NN 400
+
Sbjct: 462 HK 463
|
Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also mediate the transport of inorganic phosphate. Rattus norvegicus (taxid: 10116) |
| >sp|Q3TXX4|VGLU1_MOUSE Vesicular glutamate transporter 1 OS=Mus musculus GN=Slc17a7 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 234 bits (598), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/422 (30%), Positives = 211/422 (50%), Gaps = 48/422 (11%)
Query: 8 QRYILGFMGFLAVANAYAMRGCLSLAITEMV---VVHHKGPVKIDPNGCPGDLDSRNHTN 64
+RYI+ M L ++ +R L +AI MV H G V +
Sbjct: 61 RRYIIAIMSGLGFCISFGIRCNLGVAIVSMVNNSTTHRGGHVVVQ--------------- 105
Query: 65 PDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA 124
+F+WD +T GLI +F+WGY++ IPGG + QKF GF I++T+ +L P A
Sbjct: 106 -KAQFNWDPETVGLIHGSFFWGYIVTQIPGGFICQKFAANRVFGFAIVATSTLNMLIPSA 164
Query: 125 ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFL 184
AR +I +R +GL EG T+PA + + ++W PP ER ++ + F G+ G V + L
Sbjct: 165 ARVHYGCVIFVRILQGLVEGVTYPACHGIWSKWAPPLERSRLATTAFCGSYAGAVVAMPL 224
Query: 185 SGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLA 244
+G L++Y+ W +FY++G G+ W++ W + Y PA HP IS+ E++Y+ D IG A
Sbjct: 225 AGVLVQYS--GWSSVFYVYGSFGIFWYLFWLLVSYESPALHPSISEEERKYIEDAIGESA 282
Query: 245 R--------------------------NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGV 278
+ W +++ P Y + V F I+K G+
Sbjct: 283 KLMNPVTKFNTPWRRFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEISKVGL 342
Query: 279 LSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQ 338
+S+LP L+M + + G +D+L S+ I S T +RK+ A+ +++ Y+
Sbjct: 343 VSALPHLVMTIIVPIGGQIADFLRSRHIMSTTNVRKLMNCGGFGMEATLLLVVGYSHSKG 402
Query: 339 ILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVP 398
+ ++ + + F GF VN LD++P YA LM I NG+G +SG++ P ++G +
Sbjct: 403 V-AISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTK 461
Query: 399 NN 400
+
Sbjct: 462 HK 463
|
Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also mediate the transport of inorganic phosphate. Mus musculus (taxid: 10090) |
| >sp|A4FV52|VGLU1_BOVIN Vesicular glutamate transporter 1 OS=Bos taurus GN=SLC17A7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (597), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 127/422 (30%), Positives = 211/422 (50%), Gaps = 48/422 (11%)
Query: 8 QRYILGFMGFLAVANAYAMRGCLSLAITEMV---VVHHKGPVKIDPNGCPGDLDSRNHTN 64
+RYI+ M L ++ +R L +AI MV H G V +
Sbjct: 61 RRYIIAIMSGLGFCISFGIRCNLGVAIVSMVNNSTTHRGGHVVMQ--------------- 105
Query: 65 PDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA 124
+F+WD +T GLI +F+WGY++ IPGG + QKF GF I++T+ +L P A
Sbjct: 106 -KAQFNWDPETVGLIHGSFFWGYIVTQIPGGFICQKFAANRVFGFAIVATSTLNMLIPSA 164
Query: 125 ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFL 184
AR +I +R +GL EG T+PA + + ++W PP ER ++ + F G+ G V + L
Sbjct: 165 ARVHYGCVIFVRILQGLVEGVTYPACHGIWSKWAPPLERSRLATTAFCGSYAGAVVAMPL 224
Query: 185 SGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLA 244
+G L++Y+ W +FY++G G+ W++ W + Y PA HP IS+ E++Y+ D IG A
Sbjct: 225 AGVLVQYS--GWSSVFYVYGSFGIFWYLFWLLVSYESPALHPSISEEERKYIEDAIGESA 282
Query: 245 R--------------------------NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGV 278
+ W +++ P Y + V F I+K G+
Sbjct: 283 KLMNPVTKFNTPWRRFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEISKVGL 342
Query: 279 LSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQ 338
+S+LP L+M + + G +D+L S+ I S T +RK+ A+ +++ Y+
Sbjct: 343 VSALPHLVMTIIVPIGGQIADFLRSRRIMSTTNVRKLMNCGGFGMEATLLLVVGYSHSKG 402
Query: 339 ILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVP 398
+ ++ + + F GF VN LD++P YA LM I NG+G +SG++ P ++G +
Sbjct: 403 V-AISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTK 461
Query: 399 NN 400
+
Sbjct: 462 HK 463
|
Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also mediate the transport of inorganic phosphate. Bos taurus (taxid: 9913) |
| >sp|Q9P2U7|VGLU1_HUMAN Vesicular glutamate transporter 1 OS=Homo sapiens GN=SLC17A7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (596), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 127/422 (30%), Positives = 210/422 (49%), Gaps = 48/422 (11%)
Query: 8 QRYILGFMGFLAVANAYAMRGCLSLAITEMV---VVHHKGPVKIDPNGCPGDLDSRNHTN 64
+RYI+ M L ++ +R L +AI MV H G V +
Sbjct: 61 RRYIIAIMSGLGFCISFGIRCNLGVAIVSMVNNSTTHRGGHVVVQ--------------- 105
Query: 65 PDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA 124
+F WD +T GLI +F+WGY++ IPGG + QKF GF I++T+ +L P A
Sbjct: 106 -KAQFSWDPETVGLIHGSFFWGYIVTQIPGGFICQKFAANRVFGFAIVATSTLNMLIPSA 164
Query: 125 ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFL 184
AR +I +R +GL EG T+PA + + ++W PP ER ++ + F G+ G V + L
Sbjct: 165 ARVHYGCVIFVRILQGLVEGVTYPACHGIWSKWAPPLERSRLATTAFCGSYAGAVVAMPL 224
Query: 185 SGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLA 244
+G L++Y+ W +FY++G G+ W++ W + Y PA HP IS+ E++Y+ D IG A
Sbjct: 225 AGVLVQYS--GWSSVFYVYGSFGIFWYLFWLLVSYESPALHPSISEEERKYIEDAIGESA 282
Query: 245 R--------------------------NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGV 278
+ W +++ P Y + V F I+K G+
Sbjct: 283 KLMNPLTKFSTPWRRFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEISKVGL 342
Query: 279 LSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQ 338
+S+LP L+M + + G +D+L S+ I S T +RK+ A+ +++ Y+
Sbjct: 343 VSALPHLVMTIIVPIGGQIADFLRSRRIMSTTNVRKLMNCGGFGMEATLLLVVGYSHSKG 402
Query: 339 ILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVP 398
+ ++ + + F GF VN LD++P YA LM I NG+G +SG++ P ++G +
Sbjct: 403 V-AISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTK 461
Query: 399 NN 400
+
Sbjct: 462 HK 463
|
Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also mediate the transport of inorganic phosphate. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1188 | ||||||
| 328702822 | 485 | PREDICTED: putative inorganic phosphate | 0.338 | 0.828 | 0.546 | 1e-131 | |
| 328713763 | 514 | PREDICTED: sialin-like [Acyrthosiphon pi | 0.344 | 0.795 | 0.509 | 1e-130 | |
| 270012476 | 496 | hypothetical protein TcasGA2_TC006631 [T | 0.334 | 0.800 | 0.554 | 1e-129 | |
| 189240403 | 487 | PREDICTED: similar to sodium-dependent p | 0.334 | 0.815 | 0.554 | 1e-128 | |
| 312379474 | 501 | hypothetical protein AND_08672 [Anophele | 0.357 | 0.848 | 0.504 | 1e-127 | |
| 91089231 | 486 | PREDICTED: similar to sodium-dependent p | 0.351 | 0.860 | 0.517 | 1e-126 | |
| 328709879 | 514 | PREDICTED: sialin-like [Acyrthosiphon pi | 0.345 | 0.797 | 0.506 | 1e-126 | |
| 345482563 | 503 | PREDICTED: putative inorganic phosphate | 0.335 | 0.793 | 0.531 | 1e-126 | |
| 322794510 | 486 | hypothetical protein SINV_12524 [Solenop | 0.330 | 0.808 | 0.528 | 1e-125 | |
| 157121079 | 497 | sodium-dependent phosphate transporter [ | 0.363 | 0.869 | 0.492 | 1e-124 |
| >gi|328702822|ref|XP_001946515.2| PREDICTED: putative inorganic phosphate cotransporter-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 478 bits (1230), Expect = e-131, Method: Compositional matrix adjust.
Identities = 234/428 (54%), Positives = 296/428 (69%), Gaps = 26/428 (6%)
Query: 1 MLQGCISQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSR 60
++ S+RY++ MGF+ +ANAYAMR LS+AITEMV H+ IDPNGCPG L +
Sbjct: 14 IIDSACSKRYVIAIMGFIGIANAYAMRSVLSVAITEMVEDIHR--TAIDPNGCPGPLKTA 71
Query: 61 NHTNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLL 120
N TNP+ EFDW E QG IL AFY+GYV IPGG+LAQK+GGKH G GI TA+ TLL
Sbjct: 72 NTTNPNAEFDWSETLQGHILGAFYYGYVFAQIPGGILAQKYGGKHVFGVGIFLTAVLTLL 131
Query: 121 TPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVF 180
TP AAR ++I +R EG+GEG T PA+N LLAQWVP ER +IGSFVFAGN IGT+
Sbjct: 132 TPIAARIGPAYMIGVRVLEGVGEGPTIPAMNALLAQWVPIGERSRIGSFVFAGNMIGTIV 191
Query: 181 SSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTI 240
+ +G+LLK TD +WP +FY+ G++G++W+V W L Y+ P HP I+ E YL +
Sbjct: 192 AQSSAGYLLKITDDNWPLVFYVCGVVGLIWYVFWNLLVYSSPNEHPTITDYELAYLERNL 251
Query: 241 GCLARNK------------------------IGHDWGLFMISADLPKYMKSVMKFSIAKN 276
+ +NK I HDW LFMI+ADLPKYMKSVMKFSIA+
Sbjct: 252 KGVNKNKNTLKSTPWMSMLSSGPMWGLMIGQIAHDWALFMINADLPKYMKSVMKFSIAET 311
Query: 277 GVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGC 336
GV SS+P +LMW+ AI+ GW SDYL+S + R++F+TIA +GP G + ASYAGC
Sbjct: 312 GVWSSMPHVLMWVFAILTGWLSDYLISNGKLGILQQRRLFSTIACIGPMLGTLAASYAGC 371
Query: 337 DQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGIL 396
D+I VV LFT+GMA MGFFY S+KVN +DLSPNYAG MA+VNG+GA++GI+SP LIG L
Sbjct: 372 DKIKVVVLFTIGMATMGFFYSSMKVNVMDLSPNYAGPAMAMVNGVGAVAGIVSPPLIGYL 431
Query: 397 VPNNGVLS 404
+PNN +L
Sbjct: 432 IPNNTLLE 439
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328713763|ref|XP_001947560.2| PREDICTED: sialin-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/451 (50%), Positives = 307/451 (68%), Gaps = 42/451 (9%)
Query: 6 ISQRYILGFMGFLAVANAYAMRGCLSLAITEMV----VVHHKGPVKIDPNGCPGDLDSRN 61
+SQR+++ MG + + AY MR CL + +T+MV VV +G + + CP S +
Sbjct: 8 VSQRWVMAVMGMMGLTMAYVMRACLGITLTQMVKPVVVVVDRGAKSVRHDYCPMQ-KSSS 66
Query: 62 HTNP------------DNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGF 109
H +P + FDWDEKTQG ILS+FY+GY++ H+PGG+L+Q+FGGKHT+G
Sbjct: 67 HGHPKSNRTVIVEGEFQHRFDWDEKTQGEILSSFYYGYILTHLPGGVLSQRFGGKHTMGI 126
Query: 110 GILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 169
GILSTAIFTL+TP+ A L LRF EGLGEGTTFPAL TLLAQW PP E+G++ +
Sbjct: 127 GILSTAIFTLMTPYVANMGPRPLTILRFVEGLGEGTTFPALYTLLAQWAPPEEKGRLSTV 186
Query: 170 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYIS 229
VFAG QIG +FS+FLSGF+++YT G WP +FY FGI ++WFV WC L YNDP SHP+IS
Sbjct: 187 VFAGTQIGNIFSNFLSGFIIQYTPGGWPNVFYFFGITSLIWFVLWCVLVYNDPKSHPFIS 246
Query: 230 QREKEYLADTIGCLARNK-----------------------IGHDWGLFMISADLPKYMK 266
E+EYL +IG L R + +GHDWG F I +DLPKYM
Sbjct: 247 DTEREYLKKSIGSLERKRELPSTPWKSILTSWKIWALIFIEVGHDWGAFTIISDLPKYMS 306
Query: 267 SVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPAS 326
V+ FSI++NG+LSS+PF+ W+T+I+A +D+L+SK I +VT +RKIF I +VGP
Sbjct: 307 DVLHFSISENGLLSSVPFIAQWVTSILASILADWLISKRIMTVTAVRKIFAIIGNVGPGI 366
Query: 327 GVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISG 386
GV+ AS+ GCD+++ FT+GMA MGF YPS++VN+LDLSPNY+ T+MA+VNGIG +SG
Sbjct: 367 GVMCASFVGCDKMIATLCFTLGMALMGFCYPSIRVNSLDLSPNYSSTIMALVNGIGCLSG 426
Query: 387 IISPYLIGILVPNNGVLSSLPFLLMWLTAIV 417
+ +PY+ GIL PN VL L+ W+ IV
Sbjct: 427 MATPYIAGILTPNRTVLEWR--LVFWIMMIV 455
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270012476|gb|EFA08924.1| hypothetical protein TcasGA2_TC006631 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 235/424 (55%), Positives = 296/424 (69%), Gaps = 27/424 (6%)
Query: 6 ISQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDL-DSRNHTN 64
I QRY+LG MGFLA+ NAY MR LS+AITEMV K DP+ CPG L ++ + TN
Sbjct: 24 IPQRYVLGVMGFLAIVNAYTMRVTLSVAITEMVE-PSKASTHYDPDSCPGSLANTSSVTN 82
Query: 65 PDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF- 123
D + W QGLILS+FYWGYVI HIPGG++A++FGGK++LG GIL TAIFT +TPF
Sbjct: 83 SDKLYPWTSTQQGLILSSFYWGYVITHIPGGMIAERFGGKYSLGLGILCTAIFTFITPFV 142
Query: 124 --AARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFS 181
A+ W++ +R EGLGEGTTFPALN LLAQWVP ER KIG+ VFAG+QIGTV
Sbjct: 143 IYASDGHWGWVVFVRVIEGLGEGTTFPALNVLLAQWVPLHERSKIGTLVFAGSQIGTVAG 202
Query: 182 SFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIG 241
+ +SG L+ T DW +FY+FG L +LW W LCY DP +HP+IS EKEYL I
Sbjct: 203 NAISGALISVTQ-DWASVFYVFGALAILWVFLWMVLCYPDPETHPFISDEEKEYLRKHIA 261
Query: 242 CLARNK---------------------IGHDWGLFMISADLPKYMKSVMKFSIAKNGVLS 280
+ R K IGHDWG F + DLPKYMK V+KF++A+NGV S
Sbjct: 262 HVTRKKRQVPWYSIMTSAPVLALIAAQIGHDWGFFTMVTDLPKYMKDVLKFNVAQNGVWS 321
Query: 281 SLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQIL 340
S+P++ MWL ++ +GW D+LV+K SVT+ RKIFTTIAS+GPA +I ASY+GCD+ L
Sbjct: 322 SVPYIFMWLVSMTSGWVCDHLVAKRYLSVTLARKIFTTIASMGPAIFIIAASYSGCDRDL 381
Query: 341 VVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNN 400
V +FT+ M+FMG FY +KVNALDL+PN+AGTLMAIVNGIGAI+GII PYL+G L ++
Sbjct: 382 AVVMFTIAMSFMGSFYCGMKVNALDLAPNFAGTLMAIVNGIGAITGIIVPYLVGALTEDH 441
Query: 401 GVLS 404
++
Sbjct: 442 TLMQ 445
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|189240403|ref|XP_001809051.1| PREDICTED: similar to sodium-dependent phosphate transporter [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1204), Expect = e-128, Method: Compositional matrix adjust.
Identities = 235/424 (55%), Positives = 296/424 (69%), Gaps = 27/424 (6%)
Query: 6 ISQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDL-DSRNHTN 64
I QRY+LG MGFLA+ NAY MR LS+AITEMV K DP+ CPG L ++ + TN
Sbjct: 15 IPQRYVLGVMGFLAIVNAYTMRVTLSVAITEMVE-PSKASTHYDPDSCPGSLANTSSVTN 73
Query: 65 PDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF- 123
D + W QGLILS+FYWGYVI HIPGG++A++FGGK++LG GIL TAIFT +TPF
Sbjct: 74 SDKLYPWTSTQQGLILSSFYWGYVITHIPGGMIAERFGGKYSLGLGILCTAIFTFITPFV 133
Query: 124 --AARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFS 181
A+ W++ +R EGLGEGTTFPALN LLAQWVP ER KIG+ VFAG+QIGTV
Sbjct: 134 IYASDGHWGWVVFVRVIEGLGEGTTFPALNVLLAQWVPLHERSKIGTLVFAGSQIGTVAG 193
Query: 182 SFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIG 241
+ +SG L+ T DW +FY+FG L +LW W LCY DP +HP+IS EKEYL I
Sbjct: 194 NAISGALISVTQ-DWASVFYVFGALAILWVFLWMVLCYPDPETHPFISDEEKEYLRKHIA 252
Query: 242 CLARNK---------------------IGHDWGLFMISADLPKYMKSVMKFSIAKNGVLS 280
+ R K IGHDWG F + DLPKYMK V+KF++A+NGV S
Sbjct: 253 HVTRKKRQVPWYSIMTSAPVLALIAAQIGHDWGFFTMVTDLPKYMKDVLKFNVAQNGVWS 312
Query: 281 SLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQIL 340
S+P++ MWL ++ +GW D+LV+K SVT+ RKIFTTIAS+GPA +I ASY+GCD+ L
Sbjct: 313 SVPYIFMWLVSMTSGWVCDHLVAKRYLSVTLARKIFTTIASMGPAIFIIAASYSGCDRDL 372
Query: 341 VVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNN 400
V +FT+ M+FMG FY +KVNALDL+PN+AGTLMAIVNGIGAI+GII PYL+G L ++
Sbjct: 373 AVVMFTIAMSFMGSFYCGMKVNALDLAPNFAGTLMAIVNGIGAITGIIVPYLVGALTEDH 432
Query: 401 GVLS 404
++
Sbjct: 433 TLMQ 436
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|312379474|gb|EFR25736.1| hypothetical protein AND_08672 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 235/466 (50%), Positives = 311/466 (66%), Gaps = 41/466 (8%)
Query: 6 ISQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNP 65
I QR IL MGFLA+ NAY MR LS+AITEMV G ++ D CP D D+
Sbjct: 12 IPQRVILAIMGFLAIMNAYTMRISLSIAITEMVNKTTGGAIEEDGGVCPIDEDADPEDFT 71
Query: 66 DNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA 125
EFDWDE+ QG+ILS+FYWGYVI HIPGG+LA+KFGGK TL GILSTAIFTL+TP+A
Sbjct: 72 GGEFDWDEELQGIILSSFYWGYVITHIPGGMLAEKFGGKWTLSLGILSTAIFTLITPWAV 131
Query: 126 RQS-ANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFL 184
+ LI +R GLGEGTTFPAL+ L+A W+P ER K+GS VF G Q+GT+ + L
Sbjct: 132 TSGGSTALIVIRVLMGLGEGTTFPALSALMATWIPAKERSKLGSLVFGGGQVGTILGNLL 191
Query: 185 SGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLA 244
SG LL DG W +FY FG LG+LWFV + LCY+DP SHP+IS++EK YL +G L
Sbjct: 192 SGVLLHNIDG-WSSVFYFFGGLGILWFVIFTLLCYSDPESHPFISEKEKAYLKQELGTLE 250
Query: 245 RNK-----------------------IGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSS 281
R++ IGHDWG F++ DLPKYM V++FSI NG+ SS
Sbjct: 251 RDRTLPPTPWRYILTSVPMMALVCAQIGHDWGFFIMVTDLPKYMSDVLRFSIKDNGLYSS 310
Query: 282 LPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILV 341
LP+L+MW+ ++ G SD+L++ ++T RK+FTTIAS+GPA ++ ASYAGC++++V
Sbjct: 311 LPYLVMWIVSLSTGVLSDWLITSGRMTITFGRKLFTTIASIGPACFIVGASYAGCEKVIV 370
Query: 342 VTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNNG 401
V LFT M MG FYP +KVN LDLSPNYAGTLMAI NGIGAI+GII+PY++G++ PN+
Sbjct: 371 VMLFTFAMGLMGTFYPGMKVNPLDLSPNYAGTLMAITNGIGAITGIIAPYVVGVMTPNHT 430
Query: 402 V---------------LSSLPFLLMWLTAIVAGWFSDYLVSKNIFS 432
+ +++L +++ W + V W + +L++K++ S
Sbjct: 431 LEEWRIVFWISFAIFNVTNLAYII-WASGEVQPWNTPHLMNKSVES 475
|
Source: Anopheles darlingi Species: Anopheles darlingi Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91089231|ref|XP_968382.1| PREDICTED: similar to sodium-dependent phosphate transporter [Tribolium castaneum] gi|270012477|gb|EFA08925.1| hypothetical protein TcasGA2_TC006632 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 236/456 (51%), Positives = 315/456 (69%), Gaps = 38/456 (8%)
Query: 6 ISQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGD---LDSRNH 62
I QRYI+G MGFLA+ NAY MR LS+AITEMV+ + +P+ CP D +S
Sbjct: 16 IPQRYIMGIMGFLAIVNAYTMRVSLSVAITEMVLPPNTTQAN-NPDSCPSDDGITNSSTI 74
Query: 63 TNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTP 122
T+PD +DW E TQGLILS+FYWGY+I H+PGG+LA+KFGG++TLG GILSTA FTL+TP
Sbjct: 75 TDPDKLYDWSESTQGLILSSFYWGYLITHLPGGILAEKFGGRYTLGLGILSTAFFTLITP 134
Query: 123 FAARQSA-NW--LIALRFFEGLGEGTTFPALNTLLAQW-VPPTERGKIGSFVFAGNQIGT 178
S NW L+ LR EGLGEGTT+PALNTLLA+W VP ER K+GS V+AG QIGT
Sbjct: 135 LVIHASGGNWVALVVLRLVEGLGEGTTYPALNTLLAKWWVPLHERAKMGSLVYAGGQIGT 194
Query: 179 VFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLAD 238
+ S+F+SG L+K T+ DW +FYLFG LGVLW V W LCY+DP SHP+I + E +YL
Sbjct: 195 IISNFISGSLIKATE-DWSSVFYLFGGLGVLWVVLWFLLCYSDPQSHPFIKESELKYLQT 253
Query: 239 TIGCLARNK---------------------IGHDWGLFMISADLPKYMKSVMKFSIAKNG 277
+ + K IGHDWG + + DLPKYMK V+KF + +NG
Sbjct: 254 ELSGVTNEKKTIPWRAIFTSVPLWALVAAQIGHDWGFYTMVTDLPKYMKDVLKFRVDENG 313
Query: 278 VLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCD 337
+ SSLP+ +MW+ ++++G+ D+L+ + + +T RK FT +ASVGPA +I+ASY GCD
Sbjct: 314 LWSSLPYAVMWIVSMISGFVCDWLIRRKLIGLTFARKFFTVVASVGPAIFIIIASYVGCD 373
Query: 338 QILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILV 397
+++ V +FT+GM FMG +Y +KVNALDLSPN+AGTLMAI NGIGAI+GII+PYL G L
Sbjct: 374 RMMAVYMFTIGMGFMGTYYCGMKVNALDLSPNFAGTLMAITNGIGAITGIITPYLTGALT 433
Query: 398 PNNGVLSSLPFLLMWLTAIVAGWFSDYLVSKNIFSV 433
N+ + S ++MW++ ++ ++VS I+S+
Sbjct: 434 ENHTM--SEWRIVMWISFVI------FMVSSVIYSI 461
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328709879|ref|XP_001947589.2| PREDICTED: sialin-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 228/450 (50%), Positives = 301/450 (66%), Gaps = 40/450 (8%)
Query: 6 ISQRYILGFMGFLAVANAYAMRGCLSLAITEMV----VVHHKGPVKIDPNGCP-GDLDSR 60
ISQR+++ MG + V AY MR CL + +T+MV VV G + + CP S
Sbjct: 8 ISQRWVMAVMGMMGVTMAYVMRACLGITLTQMVRPVVVVVDGGARSVRHDYCPMPQSSSH 67
Query: 61 NHTNPD----------NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFG 110
H+ + N FDWDEKTQG ILS+FY+GY++ H+PGG+L+Q+FGGK+T+G G
Sbjct: 68 GHSKSNRTVVVEDVFKNRFDWDEKTQGEILSSFYYGYILTHLPGGVLSQRFGGKYTMGLG 127
Query: 111 ILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 170
ILSTAIFTL+TP+ A + L LRF EGLGEGTTFPAL TLLAQW PP E+GK+ + V
Sbjct: 128 ILSTAIFTLMTPYVAYMGSRPLTILRFVEGLGEGTTFPALCTLLAQWAPPEEKGKLSTLV 187
Query: 171 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQ 230
FAG QIG +FS+FLSGF+++Y G WP +FY FGI ++WFV WC YNDP SHP+IS
Sbjct: 188 FAGVQIGNIFSNFLSGFIIQYIPGGWPNVFYFFGITSLIWFVLWCIFVYNDPNSHPFISD 247
Query: 231 REKEYLADTIGCLARNK-----------------------IGHDWGLFMISADLPKYMKS 267
E++YL +IG L R K GHDWG F I +DLPKYM
Sbjct: 248 MERDYLKQSIGSLERKKDLAPTPWKSILTSWPVWALIIVEAGHDWGGFTIISDLPKYMSD 307
Query: 268 VMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASG 327
V+ FSI +NG+LSS+P++ W+T+I+A +D L+SK I SVT +RK++ I +VGP G
Sbjct: 308 VLHFSITENGLLSSIPYIAQWVTSILASILADRLISKRIMSVTAVRKVYAIIGTVGPGMG 367
Query: 328 VILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGI 387
V+ AS+ GCD+++ FT+GMA MGF YPS+++N+LDLSPNYA T+MA+VNGIG +SG+
Sbjct: 368 VMCASFVGCDKMIATLCFTLGMALMGFCYPSIRINSLDLSPNYAPTIMALVNGIGCLSGM 427
Query: 388 ISPYLIGILVPNNGVLSSLPFLLMWLTAIV 417
+PY+ GIL PN VL L+ W+ IV
Sbjct: 428 ATPYVAGILTPNRTVLEWR--LVFWIMMIV 455
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345482563|ref|XP_001607837.2| PREDICTED: putative inorganic phosphate cotransporter-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 229/431 (53%), Positives = 292/431 (67%), Gaps = 32/431 (7%)
Query: 4 GCISQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHH---------KGPVKIDPNGCP 54
CI QR++ MGFLA+ NAYAMR CLS+AITEM V + + V G
Sbjct: 10 ACIPQRWVFALMGFLALLNAYAMRVCLSIAITEMTVPLNNSVAGDNICEAEVSSPGAGAG 69
Query: 55 GDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILST 114
S + T ++W E+ QG+ILS+FYWGY++ H+PGG+LA++FGGK++LG GILST
Sbjct: 70 NSSASESITANKYTYEWSEELQGIILSSFYWGYILTHLPGGMLAERFGGKYSLGLGILST 129
Query: 115 AIFTLLTPFAAR-QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAG 173
AIFTLLTP A + A LI LR GLGEGTTFPALN +LAQW PP ER KIGS VFAG
Sbjct: 130 AIFTLLTPVAVKWGDATALIVLRVLMGLGEGTTFPALNAMLAQWTPPEERSKIGSLVFAG 189
Query: 174 NQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREK 233
Q+GTVF++ LSGF+L ++ WP +FY+FG +GVLWF+ W LCYN+P HP+IS E
Sbjct: 190 AQLGTVFATTLSGFILHHSTMGWPAVFYVFGSVGVLWFIVWVVLCYNNPREHPFISDAEA 249
Query: 234 EYLADTIGC----------------------LARNKIGHDWGLFMISADLPKYMKSVMKF 271
+YL + + L +IGHDWG F + DLPKYM SV+KF
Sbjct: 250 KYLDERMSANTHQNPPPVPWRHILRSVPLWALIAAQIGHDWGFFTMVTDLPKYMGSVLKF 309
Query: 272 SIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILA 331
SI NG+ SSLP+L MW ++ W +D++++K I S T +RK+ TTIASVGP +I A
Sbjct: 310 SIKDNGIYSSLPYLCMWFCSLFTSWLADWMITKGIMSTTNVRKLGTTIASVGPGLFIIGA 369
Query: 332 SYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPY 391
SYAGCD+ +VV LFTVGM MG FYP +KVNALDLSPNY+GTLMAI NGI A++GI++PY
Sbjct: 370 SYAGCDKTVVVILFTVGMTLMGTFYPGMKVNALDLSPNYSGTLMAITNGIAALTGIVTPY 429
Query: 392 LIGILVPNNGV 402
++GIL P+ V
Sbjct: 430 IVGILTPHQTV 440
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322794510|gb|EFZ17563.1| hypothetical protein SINV_12524 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 458 bits (1178), Expect = e-125, Method: Compositional matrix adjust.
Identities = 223/422 (52%), Positives = 291/422 (68%), Gaps = 29/422 (6%)
Query: 4 GCISQRYILGFMGFLAVANAYAMRGCLSLAITEMVV-VHHKGPVKIDPNGCPG-DLDSRN 61
G +SQR+I MGFLA+ NAY MR CLS+ ITEM + +HH D CP D+D +
Sbjct: 16 GRLSQRWIFAIMGFLAILNAYTMRICLSITITEMTIPIHHN--YSNDTERCPKIDVDEKQ 73
Query: 62 HTNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLT 121
+ N +DWDE TQGLILS+FYWGYVI H+PGG+LA+KFGGK+TL GILSTA+FTLLT
Sbjct: 74 EIDITNRYDWDEHTQGLILSSFYWGYVITHLPGGILAEKFGGKYTLSLGILSTAVFTLLT 133
Query: 122 PFAAR-QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVF 180
P A LI LR GLGEGTTFPALN +LAQW PP ER IGS VFAG Q+GTVF
Sbjct: 134 PLVVDWGQATGLIVLRILMGLGEGTTFPALNAMLAQWTPPEERSVIGSLVFAGAQLGTVF 193
Query: 181 SSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTI 240
++ +SG +L DWP +FY+FG +GV+WF+ + +CYN+P HP+IS REK++L D +
Sbjct: 194 ANAISGLILH--SYDWPAVFYVFGSIGVVWFIVFVLICYNNPDEHPFISDREKKFLHDRM 251
Query: 241 G----------------------CLARNKIGHDWGLFMISADLPKYMKSVMKFSIAKNGV 278
L ++GHDWG F + DLPKYM SV+++SI NG
Sbjct: 252 NEHTHKTPPSVPWRHMLTSAPIWALIAAQVGHDWGFFTLVTDLPKYMSSVLRYSIKNNGY 311
Query: 279 LSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQ 338
+S+LP+L+MW ++I W +D+++ K + S T +RK+ TTIAS+GP +I ASY+ CD+
Sbjct: 312 VSALPYLVMWFSSIGTSWLADWMIVKGVMSRTNVRKLGTTIASIGPGVFIIAASYSKCDR 371
Query: 339 ILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVP 398
LVV +FT+GMA MG FYP +KVN LDLSPNY+GTLMA+VNG+GA +GII+PY++G + P
Sbjct: 372 TLVVAMFTIGMALMGTFYPGMKVNGLDLSPNYSGTLMALVNGMGAFTGIITPYIVGEIAP 431
Query: 399 NN 400
Sbjct: 432 EQ 433
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157121079|ref|XP_001653764.1| sodium-dependent phosphate transporter [Aedes aegypti] gi|108883010|gb|EAT47235.1| AAEL001656-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 234/475 (49%), Positives = 315/475 (66%), Gaps = 43/475 (9%)
Query: 6 ISQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNP 65
I QR IL GFLA+ NAY MR CLS+AITEMV + V+ D CP D ++
Sbjct: 15 IPQRVILAIFGFLAILNAYTMRICLSIAITEMV--NKTTSVEEDEGVCPIDDNANMEDFT 72
Query: 66 DNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA 125
EF+WD++ QG+ILS+FYWGYVI H+PGG+LA+KFGGK TL GILSTA FTL+TP+A
Sbjct: 73 GGEFNWDQELQGVILSSFYWGYVITHLPGGILAEKFGGKWTLSLGILSTAFFTLITPWAV 132
Query: 126 R-QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFL 184
+ LI +R GLGEGTTFPAL+ LLA W+P ER K+GS VF G Q+GT+ + +
Sbjct: 133 GIGGSTALIIIRVLMGLGEGTTFPALSALLASWIPLKERSKLGSLVFGGGQVGTILGNLI 192
Query: 185 SGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLA 244
SG+LL DG W +FY FG +GV+WF+ + LCY+DP SHP+IS +EK++L +G L
Sbjct: 193 SGYLLHSFDG-WSSVFYFFGGMGVVWFILFTLLCYSDPQSHPFISDKEKDFLQKELGALT 251
Query: 245 RNK-----------------------IGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSS 281
R+K IGHDWG F++ DLPKYM V++FSI NG+ SS
Sbjct: 252 RDKTLPPTPWRYILTSVPMIALVCAQIGHDWGFFIMVTDLPKYMSDVLRFSIKDNGLYSS 311
Query: 282 LPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILV 341
LP+L+MW+ ++ G SD+L+S S+T RK+FTTIAS GPA ++ ASYAGCD++LV
Sbjct: 312 LPYLVMWIVSLSTGVLSDWLISSGKMSITFGRKLFTTIASAGPAFFIVGASYAGCDRVLV 371
Query: 342 VTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNNG 401
V LFT+ M MG FYP +KVN LDLSPNYAG+LMA+ NGIGAI+GII+PY++GI+ PN+
Sbjct: 372 VALFTIAMGLMGTFYPGMKVNPLDLSPNYAGSLMAVTNGIGAITGIIAPYVVGIMTPNHS 431
Query: 402 V---------------LSSLPFLLMWLTAIVAGWFSDYLVSKNIFSVTVIRKIFT 441
+ +++L + +MW + V W + +L++K++ S V + F+
Sbjct: 432 LEEWRIVFWISFAVFHVTNLAY-VMWASGEVQPWNTPHLMNKSVESGDVNQDTFS 485
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1188 | ||||||
| FB|FBgn0010497 | 496 | dmGlut "Dietary and metabolic | 0.197 | 0.473 | 0.548 | 5.5e-121 | |
| FB|FBgn0028513 | 481 | CG9254 [Drosophila melanogaste | 0.202 | 0.498 | 0.465 | 4e-107 | |
| FB|FBgn0030452 | 559 | MFS10 "Major Facilitator Super | 0.244 | 0.520 | 0.409 | 4.1e-90 | |
| FB|FBgn0024315 | 529 | Picot "Picot" [Drosophila mela | 0.199 | 0.448 | 0.454 | 1.2e-89 | |
| UNIPROTKB|O61369 | 483 | Picot "Putative inorganic phos | 0.188 | 0.463 | 0.456 | 2.7e-86 | |
| ZFIN|ZDB-GENE-060929-1158 | 489 | slc17a5 "solute carrier family | 0.194 | 0.472 | 0.424 | 3e-79 | |
| UNIPROTKB|Q5ZL94 | 484 | SLC17A5 "Uncharacterized prote | 0.196 | 0.483 | 0.441 | 3.9e-78 | |
| UNIPROTKB|E2R8R4 | 495 | SLC17A5 "Uncharacterized prote | 0.219 | 0.527 | 0.406 | 4.6e-77 | |
| UNIPROTKB|Q9NRA2 | 495 | SLC17A5 "Sialin" [Homo sapiens | 0.222 | 0.533 | 0.4 | 5.6e-76 | |
| RGD|1311388 | 495 | Slc17a5 "solute carrier family | 0.218 | 0.525 | 0.394 | 7.1e-76 |
| FB|FBgn0010497 dmGlut "Dietary and metabolic glutamate transporter" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 671 (241.3 bits), Expect = 5.5e-121, Sum P(2) = 5.5e-121
Identities = 135/246 (54%), Positives = 167/246 (67%)
Query: 6 ISQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNG-C-PGDLDSRNHT 63
I QR IL MGFLA+ NAY MR CLS AIT +VV K D C P D+D T
Sbjct: 17 IPQRVILAIMGFLAILNAYTMRVCLSQAITVLVV--KKNSTDDDSEAICEPDDIDEG--T 72
Query: 64 NPDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF 123
+ +F+W E+ QGLILS+FY GY++ HIPGGLLA+KFGGK TLG GILSTA+FT+LTP
Sbjct: 73 SVGGDFEWSEELQGLILSSFYIGYIVTHIPGGLLAEKFGGKWTLGLGILSTAVFTMLTPL 132
Query: 124 AARQS-ANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSS 182
A + ++WLI R GLGEGTTFPAL+ LLA WVP ERGK+G+ V G Q+GT+ +
Sbjct: 133 AINKGDSDWLIVTRVLMGLGEGTTFPALSVLLAAWVPANERGKLGALVLGGGQVGTIMGN 192
Query: 183 FLSG-FLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIG 241
LSG F+ Y W +FY FG LGV+WF + FLCY+DP SHP+I E+EYL IG
Sbjct: 193 LLSGVFIDAY---GWEFVFYFFGGLGVVWFAIFMFLCYSDPTSHPFIKPSEREYLVKEIG 249
Query: 242 CLARNK 247
++RN+
Sbjct: 250 TISRNE 255
|
|
| FB|FBgn0028513 CG9254 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 583 (210.3 bits), Expect = 4.0e-107, Sum P(2) = 4.0e-107
Identities = 113/243 (46%), Positives = 156/243 (64%)
Query: 6 ISQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNP 65
+ QR+IL MGF A+ NAY MR CLS AIT +VV + + P D + T
Sbjct: 20 LPQRWILAIMGFFAIFNAYTMRICLSQAITVLVVKRNYTIFHTEAICEPDDQSDPSSTFE 79
Query: 66 DNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA- 124
++DW ++ QGLIL++FY GY++ H+PGG+LA KFGGK TL GI TAIFTLLTP
Sbjct: 80 GGDYDWSQEKQGLILASFYIGYIVTHLPGGILADKFGGKWTLSLGIFFTAIFTLLTPVCI 139
Query: 125 ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFL 184
A+ LI LR GLGEGTTFPAL+ LLA WVP ERG +G+ V G Q+G++ + +
Sbjct: 140 VYGGADALIVLRVLMGLGEGTTFPALSVLLASWVPANERGMLGALVLGGGQMGSIAGNII 199
Query: 185 SGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLA 244
SG++L + DWP +FY+F I+ ++WFV + +C++ P +HPYI E+ +LA +
Sbjct: 200 SGYVL--SSMDWPWVFYVFAIIALVWFVVFTLVCFSSPFTHPYIKPEERAFLAQEVPPPD 257
Query: 245 RNK 247
+NK
Sbjct: 258 KNK 260
|
|
| FB|FBgn0030452 MFS10 "Major Facilitator Superfamily Transporter 10" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 607 (218.7 bits), Expect = 4.1e-90, Sum P(2) = 4.1e-90
Identities = 124/303 (40%), Positives = 181/303 (59%)
Query: 4 GCISQ-RYILGFMGFLAVANAYAMRGCLSLAITEMV---VVHHKGPVKIDPNGCPGDLDS 59
GC + R+I GFMGFL A YAMR LS+AI MV + H ID + CP
Sbjct: 62 GCGPKTRHIFGFMGFLGFAVVYAMRVNLSVAIVAMVNQTAIPHSNSSVIDTDTCPLPAPH 121
Query: 60 RNHTNP----DNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTA 115
N ++P + EF WDE TQGL+L +F++GYV+ +PGG +A+ +GGK G+G+L TA
Sbjct: 122 HNGSDPNPQKEGEFVWDEATQGLVLGSFFYGYVLTQVPGGRMAELYGGKKIYGYGVLITA 181
Query: 116 IFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQ 175
+FTL+TP AA L+ +R EG+GEG T+PA++ +LA W+PP ER K + V+AG+
Sbjct: 182 VFTLITPLAAHWDLPLLVLVRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGSN 241
Query: 176 IGTVFSSFLSGFLLKYTD-GDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKE 234
IGTV S L+G+L G WP FY+FG+LG+LWF+AW +L Y+ P+ HP IS+ E+E
Sbjct: 242 IGTVISMPLAGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPSDHPRISESERE 301
Query: 235 YLADTIGCLARNKIGHDWGLFMISADLPKY-MKSVMKFSIAKNGVLSSLPFLLMWLTAIV 293
Y+ ++ + I D + +++ + I + +L+S+P + LT
Sbjct: 302 YIERSLQ--VQRLINQDLAEAEEEEGQDEVSLRAPPEEPIPWSSLLTSVPLWAILLTQCG 359
Query: 294 AGW 296
GW
Sbjct: 360 QGW 362
|
|
| FB|FBgn0024315 Picot "Picot" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 558 (201.5 bits), Expect = 1.2e-89, Sum P(2) = 1.2e-89
Identities = 110/242 (45%), Positives = 152/242 (62%)
Query: 3 QGCISQRYILGFMGFLAVANAYAMRGCLSLAITEMV--VVHHKGPVKIDPNGCPGDLDSR 60
Q C + RY + FM FL +ANAY MR +S+AI MV G + + C GD D
Sbjct: 34 QRCFATRYFVTFMLFLGMANAYVMRTNMSVAIVAMVNHTAIKSGEAEEYDDEC-GDRDIP 92
Query: 61 NHTNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLL 120
+ D EF W QG ILS+F++GYVI IP G+LA+K+G LG+G+L ++F L
Sbjct: 93 IDDSQDGEFAWSSALQGYILSSFFYGYVITQIPFGILAKKYGSLRFLGYGMLINSVFAFL 152
Query: 121 TPFAARQSANW-LIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTV 179
P AAR W L A+RF +GLGEG P + +LA+W+PP ER ++G+ V+AG Q GT+
Sbjct: 153 VPVAARGGGVWGLCAVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAVYAGAQFGTI 212
Query: 180 FSSFLSGFLLKYT-DGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLAD 238
S LSG L +Y DG WP IFY+FGI+G +W +A+ + DP+SHP I +REK+Y+ D
Sbjct: 213 ISMPLSGLLAEYGFDGGWPSIFYVFGIVGTVWSIAFLIFVHEDPSSHPTIDEREKKYIND 272
Query: 239 TI 240
++
Sbjct: 273 SL 274
|
|
| UNIPROTKB|O61369 Picot "Putative inorganic phosphate cotransporter" [Drosophila ananassae (taxid:7217)] | Back alignment and assigned GO terms |
|---|
Score = 533 (192.7 bits), Expect = 2.7e-86, Sum P(2) = 2.7e-86
Identities = 105/230 (45%), Positives = 147/230 (63%)
Query: 15 MGFLAVANAYAMRGCLSLAITEMV--VVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWD 72
M FL +ANAY MR +S+AI MV G + D C GD D + D EF W+
Sbjct: 1 MLFLGMANAYVMRTNMSVAIVAMVNHTAIKSGEEEYDDE-C-GDRDIPIDDSQDGEFPWN 58
Query: 73 EKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANW- 131
QG ILS+F++GYVI IP G+LA+K+G LG+G+L ++F L P AAR+ W
Sbjct: 59 AALQGYILSSFFYGYVITQIPFGILAKKYGSLRFLGYGMLINSVFAFLVPVAAREGGVWG 118
Query: 132 LIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY 191
L A+RF +GLGEG P + +LA+W+PP ER ++G+ V+AG Q GT+ S LSG L +Y
Sbjct: 119 LCAVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAVYAGAQFGTIISMPLSGLLAEY 178
Query: 192 T-DGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTI 240
DG WP IFY+FGI+G +W +A+ Y DP++HP I +REK+Y+ +++
Sbjct: 179 GFDGGWPSIFYVFGIVGTVWSIAFLIFVYEDPSTHPKIDEREKKYINESL 228
|
|
| ZFIN|ZDB-GENE-060929-1158 slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 501 (181.4 bits), Expect = 3.0e-79, Sum P(2) = 3.0e-79
Identities = 101/238 (42%), Positives = 146/238 (61%)
Query: 5 CISQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPG-DLDSRNHT 63
C S RY L F+ AYA+R LS+A+ +M+ + + CP ++ H
Sbjct: 33 CGSSRYGLAFLSCYGFFVAYALRVNLSVAMVDML--KNSSKANTSSSICPPHNIPVPKHN 90
Query: 64 NPDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF 123
+ +DW+ +TQG IL +F++GY+I IPGG LA+K+G K LG GIL T IFTLLTP
Sbjct: 91 HTAMVYDWNSETQGWILGSFFYGYIITQIPGGYLARKYGAKWLLGLGILCTVIFTLLTPL 150
Query: 124 AARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSF 183
AA A +LIA+R EG+GEG T+PA++ + A W PP ER ++ + + G Q+GTV +
Sbjct: 151 AADLGAGYLIAVRVLEGIGEGVTYPAMHAMWASWAPPLERSRLLTISYTGAQLGTVVALP 210
Query: 184 LSGFLLKYTDGDWPEIFYLFGILGVLWFVAW-CFLCYNDPASHPYISQREKEYLADTI 240
LSG + Y D W +FY+FG +G+LWF W CF+ N P+SH I++ EK Y+ ++
Sbjct: 211 LSGQICFYLD--WTYVFYIFGAVGLLWFFLWICFVS-NSPSSHKRITEAEKTYIMSSL 265
|
|
| UNIPROTKB|Q5ZL94 SLC17A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 519 (187.8 bits), Expect = 3.9e-78, Sum P(2) = 3.9e-78
Identities = 105/238 (44%), Positives = 142/238 (59%)
Query: 5 CISQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRN--H 62
C S RY L + F YA+R LS+A+ +MV + N CP + N
Sbjct: 24 CCSARYNLALLAFFGFFLLYALRVNLSVALVDMVEPNTSLAKNTTSNVCPEHSSTINVPR 83
Query: 63 TNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTP 122
++ WD TQG IL +F++GY+I IPGG LA K GGK LGFGI T++FTLLTP
Sbjct: 84 NTTGKKYSWDADTQGWILGSFFYGYIITQIPGGYLASKIGGKLLLGFGIFGTSVFTLLTP 143
Query: 123 FAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSS 182
AA +LIA+R EGLGEG TFPA++++ + W PP ER K+ S +AG Q+GTV S
Sbjct: 144 LAADLGVGYLIAVRALEGLGEGVTFPAMHSMWSSWAPPLERSKLLSISYAGAQLGTVVSL 203
Query: 183 FLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTI 240
LSG + Y + W +FY+FG LGVLWF W +L + P +H IS+ E+EY+ ++
Sbjct: 204 PLSGLICYYMN--WVYVFYIFGALGVLWFFFWMWLVSDKPETHKSISRIEREYILSSL 259
|
|
| UNIPROTKB|E2R8R4 SLC17A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 513 (185.6 bits), Expect = 4.6e-77, Sum P(2) = 4.6e-77
Identities = 111/273 (40%), Positives = 156/273 (57%)
Query: 5 CISQRYILGFMGFLAVANAYAMRGCLSLAITEMV-----VVHHKGPVKIDPNGCPGDLDS 59
C S RY L + F YA+R LS+A+ +MV + ++ + + P +
Sbjct: 35 CCSARYNLAVLAFFGFFVLYALRVNLSVALVDMVDSNTTLADNRTSKECAEHSAPIKV-- 92
Query: 60 RNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTL 119
H + WD +TQG IL +F++GY+I IPGG +A K GGK LGFGIL TA+FTL
Sbjct: 93 -LHNQTGKRYQWDAETQGWILGSFFYGYIITQIPGGYIASKVGGKLLLGFGILGTAVFTL 151
Query: 120 LTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTV 179
TP AA LI LR EGLGEG TFPA++ + + W PP ER K+ S +AG Q+GTV
Sbjct: 152 FTPIAADFGVGALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTV 211
Query: 180 FSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADT 239
S LSG + Y + W +FYLFGI+G++WF+ W FL P +H IS++EKEY+ +
Sbjct: 212 ISLPLSGIICFYMN--WTYVFYLFGIVGIIWFILWIFLVSETPETHKTISRQEKEYILSS 269
Query: 240 IGCLARNKIGHDWGLFMISADLPKYMKSVMKFS 272
+ ++ W + M+ + LP + V FS
Sbjct: 270 LKNQLSSQKSVPW-IPMLKS-LPLWAIVVAHFS 300
|
|
| UNIPROTKB|Q9NRA2 SLC17A5 "Sialin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 500 (181.1 bits), Expect = 5.6e-76, Sum P(2) = 5.6e-76
Identities = 108/270 (40%), Positives = 145/270 (53%)
Query: 5 CISQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLD--SRNH 62
C S RY L + F YA+R LS+A+ +MV + CP +H
Sbjct: 35 CCSARYNLAILAFFGFFIVYALRVNLSVALVDMVDSNTTLEDNRTSKACPEHSAPIKVHH 94
Query: 63 TNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTP 122
++ WD +TQG IL +F++GY+I IPGG +A K GGK LGFGIL TA+ TL TP
Sbjct: 95 NQTGKKYQWDAETQGWILGSFFYGYIITQIPGGYVASKIGGKMLLGFGILGTAVLTLFTP 154
Query: 123 FAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSS 182
AA LI LR EGLGEG TFPA++ + + W PP ER K+ S +AG Q+GTV S
Sbjct: 155 IAADLGVGPLIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISL 214
Query: 183 FLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGC 242
LSG + Y + W +FY FG +G+ WF+ W +L + P H IS EKEY+ ++
Sbjct: 215 PLSGIICYYMN--WTYVFYFFGTIGIFWFLLWIWLVSDTPQKHKRISHYEKEYILSSLRN 272
Query: 243 LARNKIGHDWGLFMISADLPKYMKSVMKFS 272
++ W I LP + V FS
Sbjct: 273 QLSSQKSVPW--VPILKSLPLWAIVVAHFS 300
|
|
| RGD|1311388 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 499 (180.7 bits), Expect = 7.1e-76, Sum P(2) = 7.1e-76
Identities = 108/274 (39%), Positives = 156/274 (56%)
Query: 5 CISQRYILGFMGFLAVANAYAMRGCLSLAITEMV-----VVHHKGPVKIDPNGCPGDLDS 59
C S RY L + F YA+R LS+A+ +MV + ++ + + P +
Sbjct: 35 CCSARYNLALLAFCGFFVLYALRVNLSVALVDMVDSNSTLTDNRTSKECAEHSAPVKVH- 93
Query: 60 RNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTL 119
NHT ++ WD +TQG IL +F++GY++ IPGG +A + GGK LG GIL TA+FTL
Sbjct: 94 HNHTG--KKYQWDAETQGWILGSFFYGYIVTQIPGGYMASRIGGKLLLGLGILGTAVFTL 151
Query: 120 LTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTV 179
TP AA LI LR EGLGEG TFPA++ + + W PP ER K+ + +AG Q+GTV
Sbjct: 152 FTPLAADLGVVALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGTV 211
Query: 180 FSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADT 239
S LSG + Y + W +FYLFG++G++WF+ W ++ + P +H IS EKEY+ +
Sbjct: 212 ISLPLSGIICYYMN--WTYVFYLFGLVGIVWFILWMWIVSDTPETHKTISHYEKEYIVSS 269
Query: 240 I-GCLARNKIGHDWGLFMISADLPKYMKSVMKFS 272
+ L+ K+ W I LP + V FS
Sbjct: 270 LKNQLSSQKVV-PW--VSILKSLPLWAIVVAHFS 300
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1188 | |||
| TIGR00894 | 465 | TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph | 5e-74 | |
| TIGR00894 | 465 | TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph | 1e-41 | |
| TIGR00894 | 465 | TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph | 4e-36 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 5e-32 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 9e-30 | |
| TIGR00894 | 465 | TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph | 1e-29 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-27 | |
| TIGR00881 | 379 | TIGR00881, 2A0104, phosphoglycerate transporter fa | 6e-20 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 9e-20 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 1e-17 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-16 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 2e-15 | |
| TIGR00881 | 379 | TIGR00881, 2A0104, phosphoglycerate transporter fa | 5e-13 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 7e-09 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 8e-09 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 3e-08 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 3e-08 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 1e-07 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-07 | |
| COG2271 | 448 | COG2271, UhpC, Sugar phosphate permease [Carbohydr | 2e-07 | |
| COG2271 | 448 | COG2271, UhpC, Sugar phosphate permease [Carbohydr | 2e-07 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 8e-07 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 3e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-06 | |
| COG2223 | 417 | COG2223, NarK, Nitrate/nitrite transporter [Inorga | 4e-06 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 6e-06 | |
| TIGR02332 | 412 | TIGR02332, HpaX, 4-hydroxyphenylacetate permease | 7e-06 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 8e-06 | |
| TIGR00886 | 366 | TIGR00886, 2A0108, nitrite extrusion protein (nitr | 4e-05 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 9e-05 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 1e-04 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 2e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-04 | |
| TIGR02332 | 412 | TIGR02332, HpaX, 4-hydroxyphenylacetate permease | 7e-04 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 0.001 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 0.002 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 0.002 |
| >gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Score = 253 bits (648), Expect = 5e-74
Identities = 124/413 (30%), Positives = 201/413 (48%), Gaps = 31/413 (7%)
Query: 7 SQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCP-GDLDSRNHTNP 65
S R L F+ + A R CLSL + MV K + ++
Sbjct: 15 SFRLFLSFLLHICNVIIIAQRICLSLTMVAMVN-------KENSTDLACLSAENELDNIK 67
Query: 66 DNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA 125
+ F W QGLILS+ ++G +I+ IP G LA K+ K ++G G+ +++ +++ P+AA
Sbjct: 68 NPNFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA 127
Query: 126 RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLS 185
++ R +GL +G+ PA + ++ +W PP ER ++ +G Q+GT +S
Sbjct: 128 GGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPIS 187
Query: 186 GFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTI---GC 242
G+L + G WP IFY+FGI+G W + W +DP+ HP IS+ EK+Y+ ++
Sbjct: 188 GWLCES-WGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKG 246
Query: 243 LARNKI-------------------GHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLP 283
R + GH W ++ LP ++ V++ S +NG+LSSLP
Sbjct: 247 STRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLP 306
Query: 284 FLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVT 343
+L WL +I AG+ +D+L S S+T RKIF I +GP Y L +
Sbjct: 307 YLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTII 366
Query: 344 LFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGIL 396
+ T+ A + +N+LDL+P + G + I G I G+I+ L G +
Sbjct: 367 ILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNI 419
|
[Transport and binding proteins, Anions]. Length = 465 |
| >gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 1e-41
Identities = 81/390 (20%), Positives = 139/390 (35%), Gaps = 89/390 (22%)
Query: 567 EESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILT 626
+ + F W QGLIL S ++G +I+ IP G LA K+ K ++G G+ +++ +I+
Sbjct: 64 DNIKNPNFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVI 123
Query: 627 PMAAYMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVIS 686
P AA G ++ R +GL +G+ PA ++++ W P ER ++ +G +GT I
Sbjct: 124 PWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIF 183
Query: 687 SSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFISQKEMDYLEETIG 746
++G L + WP++FY+FG V W ++W +P +P IS+ E Y+ ++
Sbjct: 184 LPISGWLCESWGG-WPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSL- 241
Query: 747 SLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTPWKEM 806
T P K +
Sbjct: 242 ------------------QGQKGSTRQ--------------------------SLPIKAI 257
Query: 807 ATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSV--------------------- 845
S PV A+ GH W + LP + + V+ S
Sbjct: 258 PKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFA 317
Query: 846 ----------------------HSATSMGPAVGIILASYSGCNKVLAVMFFAIGMGFMGF 883
+ +GP + Y L ++ +
Sbjct: 318 GYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSG 377
Query: 884 YYPSIRINSLDLSPNYAATLMAIVNGVQIF 913
+ INSLDL+P + + I
Sbjct: 378 PLAGVLINSLDLAPRFLGFIKGITGLPGFI 407
|
[Transport and binding proteins, Anions]. Length = 465 |
| >gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 4e-36
Identities = 62/211 (29%), Positives = 96/211 (45%), Gaps = 8/211 (3%)
Query: 964 PPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFAS--------NGLLSALPFLF 1015
P K + S PV A+ GH W + LP + + NGLLS+LP+LF
Sbjct: 250 QSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLF 309
Query: 1016 MWIFSQGAGCLSDFIVERQWFSMTLTRKIFATAASMGPAVGIILASYSGCNKVLAVMFFA 1075
W+ S AG L+DF+ + S+T RKIF +GP + Y L ++
Sbjct: 310 AWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILT 369
Query: 1076 IGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGLGAVSGIFSAPLIGIMTPNSTMSEWR 1135
+ + INSLDL+P + + I G + G+ ++ L G + + + W
Sbjct: 370 LANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWL 429
Query: 1136 LVFWLTFIILAVTNLFYLVFGSAEIQPWNDP 1166
+VF + + + +FYL+FGSAE Q W
Sbjct: 430 IVFLIMAFVNILCVIFYLIFGSAERQDWAKE 460
|
[Transport and binding proteins, Anions]. Length = 465 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 5e-32
Identities = 91/380 (23%), Positives = 149/380 (39%), Gaps = 39/380 (10%)
Query: 68 EFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ 127
+ G + SAF WGYV+ PGG L +FG + TL I+ +FT L FA
Sbjct: 23 DLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAY 82
Query: 128 SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGF 187
+ L LR G E FP + ++A W P +ER S + +G + L G+
Sbjct: 83 VS--LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGW 140
Query: 188 LLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLARNK 247
+L W F + G+LG++W V W DP E++Y+ +G L +
Sbjct: 141 IL--IHFSWQWAFIIEGVLGIIWGVLW-LKFIPDPPQKAKWLTEEEKYI--VVGGLLAEQ 195
Query: 248 IGHD------------------WGLF-----------MISADLPKYMKSVMKFSIAKNGV 278
G WGL P Y+ SI + G
Sbjct: 196 QGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGF 255
Query: 279 LSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQ 338
++SLP ++ ++ I+ G SD L+ + V + IA + + + +Y
Sbjct: 256 MASLPGIVGFIGMILGGRLSDLLLRR--GKSLVFARKTAIIAGLVLSLLMFATNYVN-IP 312
Query: 339 ILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVP 398
+ L +G +G + + + N AG ++N +G + GI+ P +IG +
Sbjct: 313 YAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAA 372
Query: 399 NNGVLSSLPFLLMWLTAIVA 418
G + ++ L I A
Sbjct: 373 TTGSFAGALMVVAALALIGA 392
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 9e-30
Identities = 98/356 (27%), Positives = 152/356 (42%), Gaps = 34/356 (9%)
Query: 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR 126
+ GLI+SAF GY + + G L+ +FG + L G+L A+ +LL FA
Sbjct: 27 EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-- 84
Query: 127 QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSG 186
S L+ RF GLG G +PA L+A+W PP ERG+ AG +G + L G
Sbjct: 85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGG 144
Query: 187 FLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLARN 246
L + W +F + ILG+L + FL L +
Sbjct: 145 LLAES--LGWRWLFLILAILGLLLALLLLFL------------------LRLLLLLALAF 184
Query: 247 KIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDI 306
+G + + LP Y++ V+ S A+ G+L SL L L A++ G SD L
Sbjct: 185 -FLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGR--- 240
Query: 307 FSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDL 366
R++ I + A G++L + A +L+V L +G F L + +
Sbjct: 241 ------RRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELA 294
Query: 367 SPNYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFS 422
P GT + N G++ G + P L G+L+ G FL++ A++A
Sbjct: 295 PPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGY--GGVFLILAALALLAALLL 348
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 1e-29
Identities = 52/162 (32%), Positives = 81/162 (50%)
Query: 400 NGVLSSLPFLLMWLTAIVAGWFSDYLVSKNIFSVTVIRKIFTTIASVGPASGVILASYAG 459
NG+LSSLP+L WL +I AG+ +D+L S S+T RKIF I +GP Y
Sbjct: 299 NGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLS 358
Query: 460 CDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGI 519
L + + T+ A + +N+LDL+P + G + I G I G+I+ L G
Sbjct: 359 AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGN 418
Query: 520 LVPNSTMLEWRLVFWISFGVIMITNVAYVFMGSGKIQSWNEP 561
++ + W +VF I V ++ + Y+ GS + Q W +
Sbjct: 419 ILSQDSKNVWLIVFLIMAFVNILCVIFYLIFGSAERQDWAKE 460
|
[Transport and binding proteins, Anions]. Length = 465 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 2e-27
Identities = 88/334 (26%), Positives = 129/334 (38%), Gaps = 22/334 (6%)
Query: 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR 126
+ GL+L+AF GY + G L+ +FG + L G+L A+ LL FA+
Sbjct: 25 EDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFAS- 83
Query: 127 QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSG 186
S L+ LR +GLG G FPA L+A W PP ERG+ + AG +G L G
Sbjct: 84 -SLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGG 142
Query: 187 FLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQRE----------KEYL 236
L W F + IL +L V L P E K L
Sbjct: 143 LLASL--FGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWKLLL 200
Query: 237 ADTIGCLARNKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGW 296
D + L + + F + LP Y + V+ S G+L L LL + ++ G
Sbjct: 201 RDPVLWLLLALLLFGFAFFALLTYLPLYQE-VLGLSALLAGLLLGLAGLLGAIGRLLLGR 259
Query: 297 FSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFY 356
SD L + R + + + A G+ L S L+V L +G F
Sbjct: 260 LSDRLGRR-------RRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFP 312
Query: 357 PSLKVNALDLSPNYAGTLMAIVNGIGAISGIISP 390
+ + GT + N G++ G + P
Sbjct: 313 ALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346
|
Length = 346 |
| >gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 6e-20
Identities = 76/358 (21%), Positives = 129/358 (36%), Gaps = 39/358 (10%)
Query: 68 EFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ 127
E + GL+LS+F Y I G ++ + + L G++ AI L F
Sbjct: 24 EIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF--FGFST 81
Query: 128 SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGF 187
S + AL G+ +G +P + +W +ERG SF + +G L F
Sbjct: 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLF 141
Query: 188 LLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPAS--------------HPYISQREK 233
+ W +F + GI+ ++ + L + P S ++E+
Sbjct: 142 GIAEL-YSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEE 200
Query: 234 EYLADTIGC--LARNKIGHDWGL-----------FMISADLPKYMKSVMKFSIAKNGVLS 280
E I + NK+ W + I P Y+ FS K
Sbjct: 201 ELTKKQIFLQYVLLNKVL--WYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAF 258
Query: 281 SLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQIL 340
+L L + ++AGW SD L + + V + + V + A +
Sbjct: 259 TLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIV-----SLLVYWLNPAANPLMD 313
Query: 341 VVTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGTLMAIVNGIGAISGIISPYLIGILV 397
++ LF +G G + V A +L+P AGT V + GI++ +G L
Sbjct: 314 LICLFALGFLVYGPQM-LIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLA 370
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 9e-20
Identities = 48/171 (28%), Positives = 74/171 (43%), Gaps = 5/171 (2%)
Query: 571 QYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAA 630
Q + G + +F WGYV+ PGG L +FG + TL I+ +FT L A
Sbjct: 21 QEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGL--QAF 78
Query: 631 YMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLT 690
V L + R G E FP ++A+W P +ER + + +G +I L
Sbjct: 79 AGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLV 138
Query: 691 GLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFISQKEMDYL 741
G + L + W F + G + I+W V+WL +P +E Y+
Sbjct: 139 GWI--LIHFSWQWAFIIEGVLGIIWGVLWLK-FIPDPPQKAKWLTEEEKYI 186
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 1e-17
Identities = 66/341 (19%), Positives = 111/341 (32%), Gaps = 26/341 (7%)
Query: 571 QYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAA 630
+ T GL+L +F GY + G L+ +FG + L G+L A+ +L A+
Sbjct: 24 AEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFAS 83
Query: 631 YMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLT 690
L+V R +GLG G FPAA L+A W P ERG+ + AG +G + L
Sbjct: 84 --SLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLG 141
Query: 691 GLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFISQKEMDYLEETIGSLTR 750
GLL L W F + +A+L V+ + P + E
Sbjct: 142 GLLASLFG--WRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAE------------- 186
Query: 751 RKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTPWKEMATSW 810
A ++ L P + + + ++ Y +
Sbjct: 187 -----EAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGL 241
Query: 811 PVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSATSMGPAVGIILASYSGCNKVLA 870
+ + + L + + A+G+ L S + + L
Sbjct: 242 LLGLAGLLGA----IGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLL 297
Query: 871 VMFFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGVQ 911
V +G G + + S T + N
Sbjct: 298 VALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAG 338
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 4e-16
Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 4/152 (2%)
Query: 571 QYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAA 630
+ + GLI+ +F GY + + G L+ +FG + L G+L A+ ++L A+
Sbjct: 26 AEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFAS 85
Query: 631 YMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLT 690
L+V RF GLG G +PAA L+A W P ERG+ AG +G ++ L
Sbjct: 86 --SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLG 143
Query: 691 GLLLKLTNNYWPVVFYLFGAVAILWFVVWLFI 722
GLL + W +F + + +L ++ LF+
Sbjct: 144 GLLAESLG--WRWLFLILAILGLLLALLLLFL 173
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 2e-15
Identities = 84/372 (22%), Positives = 133/372 (35%), Gaps = 61/372 (16%)
Query: 68 EFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ 127
E+ D G + SA G + G LA + G + L + IL ++FTLL A
Sbjct: 46 EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALA--T 103
Query: 128 SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGF 187
+ L+ LRF GLG G P LN L++++ P RG +F G IG FL+G+
Sbjct: 104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGW 163
Query: 188 LLKYTDGDWPEIFYLFGI--LGVLWFVAWCFLCYNDPASHPY-ISQREKEYLADTIGCLA 244
L+ W +FY+ GI L +L + FL P S + +S+R +
Sbjct: 164 LI--PVFGWRSLFYVGGIAPLLLLLLL-MRFL----PESIDFLVSKRPETVRRIVNAIAP 216
Query: 245 RNKIGHDWGLFMISADLP------------KYMKSVMKF-------SIAKNGVLSSLPFL 285
+ + L A K + + + + + LP L
Sbjct: 217 QMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKL 276
Query: 286 L--------------------MWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPA 325
+ + +I+ GW +D L + + ++ +F +
Sbjct: 277 MVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLF 336
Query: 326 SGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAIS 385
S +L V + A M FYP T + GIG +
Sbjct: 337 SPTLLLLLGAIAGFFVNGGQSGLYALMALFYP----------TAIRATGVGWAIGIGRLG 386
Query: 386 GIISPYLIGILV 397
II P L G L+
Sbjct: 387 AIIGPILAGYLL 398
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 5e-13
Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 3/159 (1%)
Query: 571 QYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAA 630
E +T GL+L SF Y I G ++ + + L G++ AI +
Sbjct: 22 VEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF--FGF 79
Query: 631 YMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLT 690
+ G+ +G +P + + W ++ERG +F +G + L
Sbjct: 80 STSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLV 139
Query: 691 GLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSEPGS 729
+ + W VF + G +AI+ ++ + P S
Sbjct: 140 LFGIAELYS-WHWVFIVPGIIAIIVSLICFLLLRDSPQS 177
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 7e-09
Identities = 72/332 (21%), Positives = 130/332 (39%), Gaps = 27/332 (8%)
Query: 401 GVLSSLPFLLMWLTAIVAGWFSDYLVSKNIFSVTVIRKIFTTIASVGPASGVILASYAGC 460
G++ S L L +++AG+ SD R+ + + A G +L ++A
Sbjct: 37 GLIVSAFSLGYALGSLLAGYLSD----------RFGRRRVLLLGLLLFALGSLLLAFASS 86
Query: 461 DQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGIL 520
+L+V F +G+ + + + A P G + + + + ++ P L G+L
Sbjct: 87 LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLL 146
Query: 521 VPNSTMLEWRLVFWISFGVIMITNVAYVFMGSGKIQSW------NEPRHLLPEESQQY-- 572
L WR +F I + ++ + +F+ + + + L Y
Sbjct: 147 A---ESLGWRWLFLILAILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQ 203
Query: 573 -EFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGK-HTLGFGILSTAIFTILTPMAA 630
GL+L F G ++ + GGLL+ + G + L G+L A+ +L +A
Sbjct: 204 EVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLL--LAL 261
Query: 631 YMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLT 690
L+V G G G FPA L + P RG +G + L
Sbjct: 262 APSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLA 321
Query: 691 GLLLKLTNNYWPVVFYLFGAVAILWFVVWLFI 722
GLL L + VF + A+A+L ++ L +
Sbjct: 322 GLL--LDTGGYGGVFLILAALALLAALLLLLL 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 8e-09
Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 7/152 (4%)
Query: 573 EFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYM 632
E+ D G + + G + G LA + G + L + S +F++ T + A
Sbjct: 46 EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVL---LWSILLFSVFTLLCALA 102
Query: 633 GPVW-LIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTG 691
V L++ RF GLG G P N L++ + PK RG ++ G +G + L G
Sbjct: 103 TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAG 162
Query: 692 LLLKLTNNYWPVVFYLFGAV-AILWFVVWLFI 722
L+ + W +FY+ G +L ++ F+
Sbjct: 163 WLIPVFG--WRSLFYVGGIAPLLLLLLLMRFL 192
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 3e-08
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 582 GLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVW-LIVW 640
GL+L + G +I GLL +FG K L ++ IF + T M A + LI+
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVL---LVGLFIFVLSTAMFALSSNITVLIIA 57
Query: 641 RFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNY 700
RF +G G A L+A P ERG + AGI +G ++ L G+L +
Sbjct: 58 RFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-- 115
Query: 701 WPVVFYLFGAVAILWFVVWLFI 722
W F +A+ F++ F+
Sbjct: 116 WRAPFLFLAILALAAFILLAFL 137
|
Length = 141 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 3e-08
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 4/138 (2%)
Query: 68 EFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ 127
EF D G SA G + + GG LA + G K L + +F+L T A
Sbjct: 44 EFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDF 103
Query: 128 SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGF 187
+ L+ R G+G G P L L ++ V P RG S ++ G G +S +
Sbjct: 104 PS--LLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIG-- 159
Query: 188 LLKYTDGDWPEIFYLFGI 205
+L D W IFY+ G+
Sbjct: 160 VLAAGDAAWRHIFYVGGV 177
|
Length = 406 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 45/142 (31%), Positives = 62/142 (43%), Gaps = 6/142 (4%)
Query: 77 GLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLT-PFAARQSANWLIAL 135
GL+L+ + G +I GLL +FG K L ++ IF L T FA + LI
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVL---LVGLFIFVLSTAMFALSSNITVLIIA 57
Query: 136 RFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGD 195
RF +G G A L+A PP ERG + AG +G + L G L ++
Sbjct: 58 RFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL--G 115
Query: 196 WPEIFYLFGILGVLWFVAWCFL 217
W F IL + F+ FL
Sbjct: 116 WRAPFLFLAILALAAFILLAFL 137
|
Length = 141 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 2e-07
Identities = 55/309 (17%), Positives = 114/309 (36%), Gaps = 25/309 (8%)
Query: 252 WGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTV 311
G ++ LP Y+ + S + G+L + L L +AG SD + + + +
Sbjct: 10 LGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGL 69
Query: 312 IRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYA 371
+ + ++G + +S L++ L + G +P+ D P
Sbjct: 70 L------LFALGLLLLLFASSLW-----LLLVLRVLQGLGGGALFPAAAALIADWFPPEE 118
Query: 372 -GTLMAIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSDYLVSKNI 430
G + +++ + + P L G+L G FL++ + A++A + L+ +
Sbjct: 119 RGRALGLLSAGFGLGAALGPLLGGLLASLFGW--RAAFLILAILALLAAVLAALLLPRPP 176
Query: 431 FSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPS-LKVNALD 489
+ A + PA ++L L++ L G AF L L
Sbjct: 177 PESKRPKPAEEAPAPLVPAWKLLLRDPV---LWLLLALLLFGFAFFALLTYLPLYQEVLG 233
Query: 490 LSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNSTMLEWRLVFWISFGVIMITNVAYVF 549
LS AG L+ + +GAI ++ L L +L ++ ++++ +
Sbjct: 234 LSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLL-------LALLLLILAALGLAL 286
Query: 550 MGSGKIQSW 558
+ + W
Sbjct: 287 LSLTESSLW 295
|
Length = 346 |
| >gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-07
Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 2/157 (1%)
Query: 68 EFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ 127
+ + G++ SAF Y + G+L+ + ++ + FG++ +AI +L F
Sbjct: 58 DGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNIL--FGFSP 115
Query: 128 SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGF 187
S L G +G +P + W ERG S + IG + ++
Sbjct: 116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALL 175
Query: 188 LLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPAS 224
G W FY GI+ ++ + FL + P S
Sbjct: 176 AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQS 212
|
Length = 448 |
| >gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-07
Identities = 32/157 (20%), Positives = 63/157 (40%), Gaps = 2/157 (1%)
Query: 573 EFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYM 632
+ +T G++ +F Y + G+L+ + ++ + FG++ +AI IL
Sbjct: 58 DGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNIL--FGFSP 115
Query: 633 GPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGL 692
V G +G +P + + W + ERG + +G ++ + L
Sbjct: 116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALL 175
Query: 693 LLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSEPGS 729
+ W FY G +AI+ ++ LF+ P S
Sbjct: 176 AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQS 212
|
Length = 448 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 8e-07
Identities = 63/350 (18%), Positives = 115/350 (32%), Gaps = 56/350 (16%)
Query: 380 GIGAISGIISPYL---IGILVPNNGVLSSLPFLLMWLTAIVAGWFSDYLVSKNIFSVTVI 436
G + + YL +GI G+L + L L +AG SD + + + ++
Sbjct: 11 GRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLL 70
Query: 437 RKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYA- 495
+ ++G + +S L++ L + G +P+ D P
Sbjct: 71 ------LFALGLLLLLFASSLW-----LLLVLRVLQGLGGGALFPAAAALIADWFPPEER 119
Query: 496 GTLMAIVNGIGAISGIISPYLIGILVPNSTMLEWRLVFWISFGVIMITNVAYVFM----- 550
G + +++ + + P L G+L ++ WR F I + ++ V +
Sbjct: 120 GRALGLLSAGFGLGAALGPLLGGLLA---SLFGWRAAFLILAILALLAAVLAALLLPRPP 176
Query: 551 --GSGKIQSWNEPRHLLPEESQ------------------------------QYEFDWDE 578
+ P L+P Q
Sbjct: 177 PESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSA 236
Query: 579 TTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTI-LTPMAAYMGPVWL 637
GL+LG I + G L+ + G + L +L + + L ++ +WL
Sbjct: 237 LLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWL 296
Query: 638 IVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISS 687
+V G G G FPA N L++ PK ERG +G +
Sbjct: 297 LVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346
|
Length = 346 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 3e-06
Identities = 41/144 (28%), Positives = 59/144 (40%), Gaps = 3/144 (2%)
Query: 76 QGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIAL 135
GLI+S F G +I + G L +FG K +L G + I LL FA +S LI
Sbjct: 48 SGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVG 107
Query: 136 RFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGD 195
R GLG G + +++ P RG +GS G G + + + G L
Sbjct: 108 RVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILV-AAIIGLGLNKYSNS 166
Query: 196 --WPEIFYLFGILGVLWFVAWCFL 217
W L + +L + FL
Sbjct: 167 DGWRIPLGLQFVPAILLLIGLLFL 190
|
Length = 449 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 4e-06
Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 5/152 (3%)
Query: 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGK-HTLGFGILSTAIFTLLTPFAA 125
GL+LS F G ++ + GGLL+ + G + L G+L A+ LL A
Sbjct: 204 EVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP 263
Query: 126 RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLS 185
S L+ G G G FPAL TL ++ PP RG +G L+
Sbjct: 264 --SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLA 321
Query: 186 GFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL 217
G L G + +F + L +L + L
Sbjct: 322 GLL--LDTGGYGGVFLILAALALLAALLLLLL 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 4e-06
Identities = 66/341 (19%), Positives = 120/341 (35%), Gaps = 28/341 (8%)
Query: 92 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANW-LIALRFFEGLGEGTTFPAL 150
+P G L +FGG+ +L I L FA + W L+ + GL G +F
Sbjct: 67 LPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVG 125
Query: 151 NTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLK-YTDGDWPEIFYLFGILGVL 209
+ + P ++G AGN +G + ++ + + W + ++ + +
Sbjct: 126 MPNASFFFPKEKQGLALGIAGAGN-LGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAI 184
Query: 210 WFVAWCFLCYNDPASHPYISQREKEYLADTIGCLARNKIGHDWGLFM-----------IS 258
V + P + + L + NK W L + S
Sbjct: 185 AAVLAWLGMNDVPEHRASVKPQLPAQLKA----VFSNK--DTWLLSLLYFATFGGFVGFS 238
Query: 259 ADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSD-YLVSKDIFSVTVIRKIFT 317
A LP Y+ + S G+++ L L+ L + GW SD + +V V +
Sbjct: 239 AYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAA 298
Query: 318 TIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAI 377
+ S+ S+ + + G+ F K+ + P G + I
Sbjct: 299 ALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVF----KMIPVIF-PKETGAVTGI 353
Query: 378 VNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVA 418
V IG + G P G+ + G + F+L+ +VA
Sbjct: 354 VGAIGGLGGFFLPLAFGVSLDLTGS-YTGAFMLLLAFYLVA 393
|
Length = 417 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 6e-06
Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 3/144 (2%)
Query: 581 QGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVW 640
GLI+ F G +I + G L +FG K +L G + I +L A LIV
Sbjct: 48 SGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVG 107
Query: 641 RFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNN- 699
R GLG G ++ PK RG +G+ GI G ++ +++ GL L +N
Sbjct: 108 RVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILV-AAIIGLGLNKYSNS 166
Query: 700 -YWPVVFYLFGAVAILWFVVWLFI 722
W + L AIL + LF+
Sbjct: 167 DGWRIPLGLQFVPAILLLIGLLFL 190
|
Length = 449 |
| >gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 7e-06
Identities = 78/367 (21%), Positives = 143/367 (38%), Gaps = 49/367 (13%)
Query: 77 GLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALR 136
GL + FY YVI IP ++ G + + ++ I + T FA L LR
Sbjct: 46 GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFAT--GPESLYLLR 103
Query: 137 FFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDG-- 194
G+ E P + L W P R + + + LSG++L DG
Sbjct: 104 ILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILAL-DGLM 162
Query: 195 ---DWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLARNKIGHD 251
W +F L G V+ V F + P ++ + +K+ L + I +++ +
Sbjct: 163 ALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMI---DNDQLTLE 219
Query: 252 WGLFMIS-ADLPK-------YMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWF--SDYL 301
+ A +P+ + ++M +++A + ++L + +W I+ + S +
Sbjct: 220 QPEGAFAHAAMPQRSMLREIFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNI 279
Query: 302 VSKDIFSVTVI------------------RKIFTTIASVGPASGVILASYAGCDQILVVT 343
+ + ++ RK T + + A+G +LAS + I
Sbjct: 280 MIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLI---Q 336
Query: 344 LFTVGMAFMGFF-----YPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVP 398
L + MA MG F + + ++ L +A++N G I +SP+LIGIL
Sbjct: 337 LLGIIMASMGSFSAMAIFWTTPDQSISLQARAIA--IAVINATGNIGSALSPFLIGILKD 394
Query: 399 NNGVLSS 405
G +S
Sbjct: 395 ATGSFNS 401
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PMID:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. Length = 412 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 8e-06
Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 16/142 (11%)
Query: 77 GLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALR 136
G++L +F +GY L+ +FG K L L TA+ +LT F+ + + R
Sbjct: 139 GVLLGSFVFGY---------LSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYT--VFLVFR 187
Query: 137 FFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDW 196
G+G G + L +++P +R +G+ + +G V ++ F+ DW
Sbjct: 188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP-----DW 242
Query: 197 PEIFYLFGILGVLWFVAWCFLC 218
+ + L+F+ F+
Sbjct: 243 RWLQLAVSLPTFLFFLLSWFVP 264
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 4e-05
Identities = 50/251 (19%), Positives = 82/251 (32%), Gaps = 28/251 (11%)
Query: 88 VIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTF 147
++ I G L KFG ++T +L AI L A QS + L+ LR F G+ G +F
Sbjct: 51 AVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL-AVQSYSVLLLLRLFIGIA-GGSF 108
Query: 148 PALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSF----LSGFLLK------YTDGDW- 196
+ ++ + P +G +G + F + G L+ + W
Sbjct: 109 ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWA 168
Query: 197 ----PEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLARNKIGHDW 252
P L L + + A + R L + H W
Sbjct: 169 FVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTW 228
Query: 253 GLFM-----------ISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYL 301
L + +S+ + K S G +SL LL L + G SD L
Sbjct: 229 ILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL 288
Query: 302 VSKDIFSVTVI 312
++ +
Sbjct: 289 GGARKLLMSFL 299
|
[Transport and binding proteins, Anions]. Length = 366 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 9e-05
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 15/93 (16%)
Query: 582 GLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPV--WLIV 639
G++LGSF +GY L+ +FG K L L TA+ +LT + P +V
Sbjct: 139 GVLLGSFVFGY---------LSDRFGRKKVLLLSTLVTAVSGVLTAFS----PNYTVFLV 185
Query: 640 WRFFEGLGEGTTFPAANQLLAAWIPKTERGKVG 672
+R G+G G + A L ++PK +R VG
Sbjct: 186 FRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVG 218
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 32/149 (21%), Positives = 60/149 (40%), Gaps = 3/149 (2%)
Query: 1006 GLLSALPFLFMWIFSQGAGCLSDFIVERQWFSMTLTRKIFATAASMGPAVGIILASYSGC 1065
G +++LP + +I G LSD ++ R S+ RK A A + ++ + +Y
Sbjct: 254 GFMASLPGIVGFIGMILGGRLSDLLLRRGK-SLVFARK-TAIIAGLVLSLLMFATNYVN- 310
Query: 1066 NKVLAVMFFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGLGAVSGIFSAPLIGIM 1125
A+ A+G +G + S + N A ++N LG + GI +IG +
Sbjct: 311 IPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAI 370
Query: 1126 TPNSTMSEWRLVFWLTFIILAVTNLFYLV 1154
+ L+ ++ + LV
Sbjct: 371 AATTGSFAGALMVVAALALIGALSYLLLV 399
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 38/167 (22%), Positives = 63/167 (37%), Gaps = 5/167 (2%)
Query: 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR 126
+ E G +++A+ G + LL + + L + + LL+ A
Sbjct: 41 ADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA-- 98
Query: 127 QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSG 186
S L+ R GL G + L A+ VPP +RG+ + VF G + TV L
Sbjct: 99 PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGT 158
Query: 187 FLLKYTDGDWPEIFYLFGILGVL-WFVAWCFLCYNDPASHPYISQRE 232
FL + W F +L +L + W L ++ + R
Sbjct: 159 FLGQLF--GWRATFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRT 203
|
Length = 394 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 6e-04
Identities = 35/189 (18%), Positives = 68/189 (35%), Gaps = 20/189 (10%)
Query: 975 WPVIALVITQVGHDWGLFTIAADLPKYF--------ASNGLLSALPFLFMWIFSQGAGCL 1026
++ L + +G + + LP Y A GLL +L L + + G L
Sbjct: 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLL 234
Query: 1027 SDFIVERQWFSMTLTRKIFATAASMGPAVGIILASYSGCNKVLAVMFFAIGMGFMGFYYP 1086
SD + R ++ + A+G++L + + +L V +G G +
Sbjct: 235 SDRLGRR---------RLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPA 285
Query: 1087 SIRINSLDLSPNYAATLMAIVNGLGAVSGIFSAPLIGIMTPNSTMSEWRLVFWLTFIILA 1146
+ + S P T + N G++ G L G++ + VF + +
Sbjct: 286 LLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG---YGGVFLILAALAL 342
Query: 1147 VTNLFYLVF 1155
+ L L+
Sbjct: 343 LAALLLLLL 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 7e-04
Identities = 40/171 (23%), Positives = 66/171 (38%), Gaps = 6/171 (3%)
Query: 579 TTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLI 638
T GL FY YVI IP ++ G + + ++ I + T A GP L
Sbjct: 43 TMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFAT--GPESLY 100
Query: 639 VWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTN 698
+ R G+ E P L W P R + A + + + L+G +L L
Sbjct: 101 LLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDG 160
Query: 699 NY----WPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFISQKEMDYLEETI 745
W +F L G +++ V+ F P ++ +++ L+E I
Sbjct: 161 LMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMI 211
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PMID:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. Length = 412 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 67/306 (21%), Positives = 112/306 (36%), Gaps = 43/306 (14%)
Query: 132 LIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY 191
L+ R +G G + LA++ PP +RG GSF G +G + ++ L+ LL Y
Sbjct: 99 LLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAA-LTVLLLSY 157
Query: 192 TDGD-----W----PEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADT-IG 241
GD W P + +L L+ L N + + +EK I
Sbjct: 158 LLGDDALLEWGWRIPFLVSAVLVLIGLY------LRRNLEETPVFEKAQEKHKKKRGPIA 211
Query: 242 CLARNK-----------IGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLT 290
I ++I+ LP Y+ + S ++ L +L ++T
Sbjct: 212 ETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFIT 271
Query: 291 AIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGV-ILASYAGCDQILVVTLFTVGM 349
++G SD + R + + V +L + + +GM
Sbjct: 272 IPLSGALSDRIGR---------RPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGM 322
Query: 350 AFMGFFYPSLKVNAL-DLSP---NYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLSS 405
A +G Y + L +L P Y G +A N GAI G +PY+ LV G +
Sbjct: 323 ALIGGMYTGPMGSFLPELFPTEVRYTGASLA-YNLAGAIFGGFAPYIAAALVAMTGDWYA 381
Query: 406 LPFLLM 411
+ + L
Sbjct: 382 IGYYLA 387
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 3/140 (2%)
Query: 401 GVLSSLPFLLMWLTAIVAGWFSDYLVSKNIFSVTVIRKIFTTIASVGPASGVILASYAGC 460
G ++SLP ++ ++ I+ G SD L+ + V + IA + + + +Y
Sbjct: 254 GFMASLPGIVGFIGMILGGRLSDLLLRR--GKSLVFARKTAIIAGLVLSLLMFATNYVN- 310
Query: 461 DQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGIL 520
+ L +G +G + + + N AG ++N +G + GI+ P +IG +
Sbjct: 311 IPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAI 370
Query: 521 VPNSTMLEWRLVFWISFGVI 540
+ L+ + +I
Sbjct: 371 AATTGSFAGALMVVAALALI 390
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 599 GGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVW----LIVWRFFEGLGEGTTFPA 654
GG LA + G K L I+S A+F + + A W L+V R G+G G P
Sbjct: 70 GGRLADRIGRKRIL---IVSVALFGLFSLATAQ---AWDFPSLLVARLLTGVGLGGALPN 123
Query: 655 ANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAIL 714
L + + RG + ++ G+ G + +S+ G+L W +FY+ G +L
Sbjct: 124 LIALTSEAVGPRLRGTAVSLMYCGVPFGGAL-ASVIGVLAAGDAA-WRHIFYVGGVGPLL 181
|
Length = 406 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1188 | |||
| KOG2532|consensus | 466 | 100.0 | ||
| KOG2532|consensus | 466 | 100.0 | ||
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.98 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.98 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.98 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.97 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.97 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.97 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.97 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.97 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.97 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.97 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.97 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.97 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.97 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.97 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.97 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.97 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.97 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.97 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.97 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.97 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.97 | |
| KOG2533|consensus | 495 | 99.96 | ||
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.96 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.96 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.96 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.96 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.96 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.96 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.96 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.96 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.96 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.96 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.96 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.96 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.96 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.96 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.96 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.96 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.96 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.95 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.95 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.95 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.95 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.95 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.95 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.95 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.95 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.95 | |
| KOG2533|consensus | 495 | 99.95 | ||
| PRK12382 | 392 | putative transporter; Provisional | 99.95 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.95 | |
| KOG1330|consensus | 493 | 99.95 | ||
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.95 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.95 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.95 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.95 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.95 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.95 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.95 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.95 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.95 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.95 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.95 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.95 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.95 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.94 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.94 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.94 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.94 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.94 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.94 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.94 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.94 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.94 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.94 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.94 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.94 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.94 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.94 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.94 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.94 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.94 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.94 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.94 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.94 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.94 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.93 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.93 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.93 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.93 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.93 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.93 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.93 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.93 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.93 | |
| KOG1330|consensus | 493 | 99.93 | ||
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.93 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.92 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.92 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.92 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.92 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.92 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.92 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.92 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.92 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.92 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.92 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.92 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.92 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.92 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.92 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.91 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.91 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.91 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.91 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.91 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.9 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.9 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.9 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.9 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.9 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.9 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.9 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.89 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.89 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.89 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.89 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.89 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.89 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.89 | |
| KOG3764|consensus | 464 | 99.88 | ||
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.88 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.88 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.88 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.88 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.88 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.88 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.87 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.86 | |
| KOG0569|consensus | 485 | 99.86 | ||
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.85 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.85 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.85 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.85 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.85 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.85 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.85 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.85 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.84 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.84 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.84 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.84 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.83 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.83 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.83 | |
| KOG2504|consensus | 509 | 99.83 | ||
| KOG0255|consensus | 521 | 99.82 | ||
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.82 | |
| KOG2615|consensus | 451 | 99.82 | ||
| KOG0252|consensus | 538 | 99.82 | ||
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.82 | |
| KOG0255|consensus | 521 | 99.82 | ||
| KOG0253|consensus | 528 | 99.82 | ||
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.82 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.81 | |
| KOG0569|consensus | 485 | 99.81 | ||
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.8 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.8 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.8 | |
| KOG0254|consensus | 513 | 99.8 | ||
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.8 | |
| KOG3764|consensus | 464 | 99.79 | ||
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.79 | |
| KOG0254|consensus | 513 | 99.78 | ||
| KOG2504|consensus | 509 | 99.77 | ||
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.76 | |
| KOG0253|consensus | 528 | 99.75 | ||
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.75 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.74 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.74 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.74 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.73 | |
| KOG0252|consensus | 538 | 99.72 | ||
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.7 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.69 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.68 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.68 | |
| KOG2615|consensus | 451 | 99.67 | ||
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.65 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.64 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.64 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.62 | |
| KOG2563|consensus | 480 | 99.61 | ||
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.6 | |
| KOG4686|consensus | 459 | 99.6 | ||
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.58 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.57 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.56 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.56 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.55 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.55 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.53 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.53 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.52 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.52 | |
| KOG4686|consensus | 459 | 99.52 | ||
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.51 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.48 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.47 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.46 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.44 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.43 | |
| KOG2563|consensus | 480 | 99.43 | ||
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.42 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.42 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.39 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.38 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.38 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.32 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.31 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.29 | |
| KOG3626|consensus | 735 | 99.22 | ||
| KOG2325|consensus | 488 | 99.21 | ||
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.19 | |
| KOG2816|consensus | 463 | 99.14 | ||
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.08 | |
| KOG3626|consensus | 735 | 99.05 | ||
| KOG2325|consensus | 488 | 99.03 | ||
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.0 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.88 | |
| KOG2816|consensus | 463 | 98.83 | ||
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.75 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.68 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.62 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.61 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.59 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.55 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.5 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.46 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.39 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.1 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.0 | |
| KOG3098|consensus | 461 | 97.84 | ||
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.82 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.8 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.76 | |
| KOG3762|consensus | 618 | 97.74 | ||
| KOG3098|consensus | 461 | 97.66 | ||
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.62 | |
| KOG3762|consensus | 618 | 97.57 | ||
| KOG0637|consensus | 498 | 97.51 | ||
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.5 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.41 | |
| KOG4332|consensus | 454 | 97.37 | ||
| KOG4332|consensus | 454 | 97.31 | ||
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.23 | |
| KOG0637|consensus | 498 | 97.15 | ||
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.12 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.85 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.52 | |
| KOG3810|consensus | 433 | 96.5 | ||
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 96.38 | |
| KOG3574|consensus | 510 | 96.29 | ||
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.12 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 96.0 | |
| KOG3810|consensus | 433 | 95.51 | ||
| PRK03612 | 521 | spermidine synthase; Provisional | 95.1 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 94.79 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 93.8 | |
| KOG1237|consensus | 571 | 93.58 | ||
| PRK03612 | 521 | spermidine synthase; Provisional | 93.55 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 92.63 | |
| KOG1237|consensus | 571 | 92.35 | ||
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 91.22 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 88.01 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 87.98 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 86.85 | |
| KOG3574|consensus | 510 | 84.36 | ||
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 83.81 |
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-48 Score=458.87 Aligned_cols=372 Identities=40% Similarity=0.819 Sum_probs=341.8
Q ss_pred CCcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhcc
Q psy4738 66 DNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGT 145 (1188)
Q Consensus 66 ~~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~ 145 (1188)
+.+++||++|++++.+++++|+.++++|+|+++||||.|+++..+.++.++.+++.|++++.+++.+++.|++||+++|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 57999999999999999999999999999999999999999999999999999999999988989999999999999999
Q ss_pred chhHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCC
Q psy4738 146 TFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASH 225 (1188)
Q Consensus 146 ~~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~ 225 (1188)
.+|+...++++|+|++||++..++..++.++|++++.+++|++++. ++|||++||+.|.+++++.++|+++..|+|++|
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s-~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h 223 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES-SLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKH 223 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc-CCCCchHHHHHHHHHHHHHHHHHHHhcCCcccC
Confidence 9999999999999999999999999999999999999999999998 579999999999999999999999999999999
Q ss_pred CCCCHhHHHHHHHHHhhhhh----------------------hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy4738 226 PYISQREKEYLADTIGCLAR----------------------NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLP 283 (1188)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~ 283 (1188)
+.++++|++++++.+..... ++++.+++++.+..++|+|+++++|+|.+++|+++++|
T Consensus 224 ~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP 303 (466)
T KOG2532|consen 224 PNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALP 303 (466)
T ss_pred CCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHH
Confidence 99999999998766543211 88899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhh
Q psy4738 284 FLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNA 363 (1188)
Q Consensus 284 ~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (1188)
.+.+++..+++|+++||+.+| .++.+..
T Consensus 304 ~l~~~~~k~~~g~lsD~l~~~-~ls~t~~--------------------------------------------------- 331 (466)
T KOG2532|consen 304 FLAMAIVKFVAGQLSDRLTFR-ILSETTV--------------------------------------------------- 331 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhhc-cCchHhH---------------------------------------------------
Confidence 999999999999999999887 6555554
Q ss_pred cccCchhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCccchHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhHhhhhh
Q psy4738 364 LDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSDYLVSKNIFSVTVIRKIFTTI 443 (1188)
Q Consensus 364 ~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 443 (1188)
||+++++
T Consensus 332 -------------------------------------------------------------------------rkifn~i 338 (466)
T KOG2532|consen 332 -------------------------------------------------------------------------RKIFNTI 338 (466)
T ss_pred -------------------------------------------------------------------------HHHHHhH
Confidence 5555555
Q ss_pred ccccchhhhHhhhccCCch-HHHHHHHHHHHhhhcccccccceecccCCCcchhHHHHHHhhhhhccccccceeeeeecc
Q psy4738 444 ASVGPASGVILASYAGCDQ-ILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVP 522 (1188)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~igp~i~~~l~~ 522 (1188)
+..+++++++++.+.+|.+ .+++.++++...+.|+..+|++++++|.+|||++.++|+.|+..++++.++|.++|.+++
T Consensus 339 ~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~ 418 (466)
T KOG2532|consen 339 AFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT 418 (466)
T ss_pred HHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC
Confidence 5555666666666766655 467777788899999999999999999999999999999999999999999999999997
Q ss_pred CcccchhHHHHHHHHHHHHHhhhhheeeccccccccCCCCC
Q psy4738 523 NSTMLEWRLVFWISFGVIMITNVAYVFMGSGKIQSWNEPRH 563 (1188)
Q Consensus 523 ~~t~~~wr~vf~i~a~i~l~~~l~~l~~~~~~~q~w~~~~~ 563 (1188)
++++++||.+|.+.+++++++++.|.+++++|.|+|++...
T Consensus 419 ~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e~~~w~~~~~ 459 (466)
T KOG2532|consen 419 DNTREEWRIVFLIAAGILIVGNIIFLFFGSGEPAPWTKSEE 459 (466)
T ss_pred CCCHHHHHHHHHHHHHHHHHhchheeEeecCcccCccCCcc
Confidence 66899999999999999999999999999999999997443
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=395.10 Aligned_cols=393 Identities=40% Similarity=0.767 Sum_probs=360.5
Q ss_pred ccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhccc
Q psy4738 571 QYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGT 650 (1188)
Q Consensus 571 ~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g~ 650 (1188)
+.++++|++|.+++.+++.+|+.++++|.|++.||||.|+++..+.++.++.+++...+.+.+.+.+++.|++||+++|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 67999999999999999999999999999999999999999999999999999999999888888899999999999999
Q ss_pred chhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCchHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy4738 651 TFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKL-TNNYWPVVFYLFGAVAILWFVVWLFIGYSEPGS 729 (1188)
Q Consensus 651 ~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~-~g~gWr~~F~i~~~~~~~~~~~~~~~~~~~pe~ 729 (1188)
.+|+...+.++|.|++||++..++..++..+|++++.+++|.+.+. .| |+++||+.+.+++++.++++++..|+|++
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~G--W~sifY~~g~~g~i~~~~w~~~~~d~P~~ 222 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLG--WPSIFYVFGIVGLIWFILWFLFYSDSPSK 222 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC--CchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 9999999999999999999999999999999999999999999998 66 99999999999999999999999999999
Q ss_pred CcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeecCCCcccccccc
Q psy4738 730 NPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTPWKEMATS 809 (1188)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 (1188)
+++++++|++++++.......++ .. +.+|++++++
T Consensus 223 h~~is~~El~~I~~~k~~~~~~~---------------~~------------------------------~vP~~~i~ts 257 (466)
T KOG2532|consen 223 HPNISEKELKYIEKGKSEAHVKK---------------KP------------------------------PVPYKAILTS 257 (466)
T ss_pred CCCCCHHHHHHHHhcccccccCC---------------CC------------------------------CCCHHHHHcC
Confidence 99999999998877543211100 01 2466777788
Q ss_pred hhHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhcccccccccchhHHHhhhccCcchhHHHHHHHHhhcccccccCccc
Q psy4738 810 WPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSATSMGPAVGIILASYSGCNKVLAVMFFAIGMGFMGFYYPSIR 889 (1188)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (1188)
+++++..+..++..++.+.+..++|.|+++++|++..
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~------------------------------------------- 294 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVR------------------------------------------- 294 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChh-------------------------------------------
Confidence 8889999999999999999999999999999999964
Q ss_pred ccccCCChhhHHHHHHHHhcccccccccccccccccccccccccccCCCCCCCcchhHHHHhhhhhhcccCCCCCCCchh
Q psy4738 890 INSLDLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHGKQARYHWTNRAPYSFNFPLFKYVLRKHADKYNRFQDLPPTPWK 969 (1188)
Q Consensus 890 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 969 (1188)
T Consensus 295 -------------------------------------------------------------------------------- 294 (466)
T KOG2532|consen 295 -------------------------------------------------------------------------------- 294 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcccchhhHHhhHhhcccchhhhhhcccchhhhccCccchhhHHHHHHHHhhhchhhHHHHhhccchhHHHHHHHHHhh
Q psy4738 970 EMATSWPVIALVITQVGHDWGLFTIAADLPKYFASNGLLSALPFLFMWIFSQGAGCLSDFIVERQWFSMTLTRKIFATAA 1049 (1188)
Q Consensus 970 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~~~~~~i~~~~~g~lsd~~~~r~~~~~~~~r~~~~~~~ 1049 (1188)
++|+++.+|.+.+.+...++|.++||+.+| ..+.+..||.+..++
T Consensus 295 ----------------------------------~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls~t~~rkifn~i~ 339 (466)
T KOG2532|consen 295 ----------------------------------ETGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILSETTVRKIFNTIA 339 (466)
T ss_pred ----------------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCchHhHHHHHHhHH
Confidence 789999999999999999999999999988 789999999999999
Q ss_pred hhhhHHHHHhhhccCC-chHHHHHHHHHHhhhhccccccccccccCCCCcchhHHHHHhhhhhhhhhhhhhhhheeecCC
Q psy4738 1050 SMGPAVGIILASYSGC-NKVLAVMFFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGLGAVSGIFSAPLIGIMTPN 1128 (1188)
Q Consensus 1050 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 1128 (1188)
..+.+++++.+.+.++ +....+.++.+..+..+...+++....+|..|++.+..+|+.|+..++.++++|.++|.+.++
T Consensus 340 ~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~ 419 (466)
T KOG2532|consen 340 FGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTD 419 (466)
T ss_pred HHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCC
Confidence 9999999999988875 345788888888999999999999999998999999999999999999999999999999964
Q ss_pred CccchhHHHHHHHHHHHHHhhhhhheeccCccccCCCCCC
Q psy4738 1129 STMSEWRLVFWLTFIILAVTNLFYLVFGSAEIQPWNDPNP 1168 (1188)
Q Consensus 1129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1168 (1188)
.+..+|+.+|.+.+++.+++.+++.++.+.|+++|+++++
T Consensus 420 ~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e~~~w~~~~~ 459 (466)
T KOG2532|consen 420 NTREEWRIVFLIAAGILIVGNIIFLFFGSGEPAPWTKSEE 459 (466)
T ss_pred CCHHHHHHHHHHHHHHHHHhchheeEeecCcccCccCCcc
Confidence 4667899999999999999999999999999999987543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=372.96 Aligned_cols=385 Identities=32% Similarity=0.590 Sum_probs=296.0
Q ss_pred CccchHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHH
Q psy4738 4 GCISQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAF 83 (1188)
Q Consensus 4 ~~~~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~ 83 (1188)
...+.||.+..++++++.++|.||.+++++.++|.++.+ ++...|+..+ .+..+...+|+++|..+.|++.++|
T Consensus 12 ~~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~ 85 (465)
T TIGR00894 12 YFCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKEN-----STDLACLSAE-NELDNIKNPNFKWSGALQGLILSSH 85 (465)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCC-----CCCccccccc-cccccccCCCCCCCHHHhhHHHHHH
Confidence 456789999999999999999999999999999985322 1112232211 1222334568999999999999999
Q ss_pred HHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCch
Q psy4738 84 YWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTER 163 (1188)
Q Consensus 84 ~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~R 163 (1188)
++++.+++++.|+++||+|||+++..+++++++++++++++...+++.+++.|+++|++++..+|....++.||+|++||
T Consensus 86 ~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r 165 (465)
T TIGR00894 86 FYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKER 165 (465)
T ss_pred HHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999998776446788999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccCC-CCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHhHHHHHHHHHhh
Q psy4738 164 GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDG-DWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGC 242 (1188)
Q Consensus 164 g~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~-gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 242 (1188)
++++++...+..+|.++++++++.+.+. . |||++|++.+++++++.++++++.+|+|+++++.+++|++++++....
T Consensus 166 ~~~~~~~~~~~~~g~~i~~~l~~~l~~~--~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~ 243 (465)
T TIGR00894 166 SRLLGMSTSGFQLGTFIFLPISGWLCES--WGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQG 243 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhccc
Confidence 9999999999999999999999999887 5 999999999999999999999988898887776666555443322100
Q ss_pred -------------hhh---------hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 243 -------------LAR---------NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDY 300 (1188)
Q Consensus 243 -------------~~~---------~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr 300 (1188)
..+ ..++..+..+.+.+|+|.|+++.+|++..++++..+++.++..++.++.|+++||
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~ 323 (465)
T TIGR00894 244 QKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADF 323 (465)
T ss_pred ccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 4566667788889999999999999999999999999999999999999999999
Q ss_pred HhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCchhhHHHHHHHHH
Q psy4738 301 LVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNG 380 (1188)
Q Consensus 301 ~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~ 380 (1188)
+.+|+.......++....++....+..++.......+....+..+.+.....+...+.......+..|+.+|++.|+.|.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 403 (465)
T TIGR00894 324 LKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGL 403 (465)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHH
Confidence 98877665555555555555544443333333322333333334444444444344444444556666666666666666
Q ss_pred HHhhhhhhhhHHHHhh
Q psy4738 381 IGAISGIISPYLIGIL 396 (1188)
Q Consensus 381 ~~~lgg~i~p~l~g~l 396 (1188)
.+++++.++|.+.|.+
T Consensus 404 ~~~l~~~i~p~l~g~~ 419 (465)
T TIGR00894 404 PGFIGGLIASTLAGNI 419 (465)
T ss_pred HHHHHHHHHHHhhhee
Confidence 6666666666655543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=353.77 Aligned_cols=391 Identities=31% Similarity=0.600 Sum_probs=304.8
Q ss_pred cccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhcccc
Q psy4738 572 YEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTT 651 (1188)
Q Consensus 572 ~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g~~ 651 (1188)
.|++++..+.|++.+.|.+++.+++++.|+++||+|||+++..+.++++++++++.++.+.+.+.+++.|+++|++++..
T Consensus 69 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~ 148 (465)
T TIGR00894 69 PNFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSV 148 (465)
T ss_pred CCCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccc
Confidence 38999999999999999999999999999999999999999999999999999887654335667999999999999999
Q ss_pred hhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCchHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy4738 652 FPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLT-NNYWPVVFYLFGAVAILWFVVWLFIGYSEPGSN 730 (1188)
Q Consensus 652 ~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~-g~gWr~~F~i~~~~~~~~~~~~~~~~~~~pe~~ 730 (1188)
+|....++.||+|++||+++.++...+..+|.+++|++++.+.+.. + ||++|++.+++++++.+.++++.+|+|+.+
T Consensus 149 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g--w~~~f~i~~~~~~~~~~~~~~~~~~~p~~~ 226 (465)
T TIGR00894 149 SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGG--WPMIFYVFGIVGCAWSLLWFVFPADDPSIH 226 (465)
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCeehhhhhHHHHHHHHHHHHHhcCCcccC
Confidence 9999999999999999999999999999999999999999998874 7 999999999999988888888888888766
Q ss_pred cccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeecCCCcccccccch
Q psy4738 731 PFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTPWKEMATSW 810 (1188)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 (1188)
++.+++|+++.++... ++. + +.... .++++.++++
T Consensus 227 ~~~~~~~~~~i~~~~~------------~~~-~--~~~~~------------------------------~~~~~~~~~~ 261 (465)
T TIGR00894 227 PCISKFEKKYINSSLQ------------GQK-G--STRQS------------------------------LPIKAIPKSL 261 (465)
T ss_pred CCCCHHHHHHHHhhcc------------ccc-C--CCCCC------------------------------CCHHHHhcCH
Confidence 5554444433222110 000 0 00001 1245566777
Q ss_pred hHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhcccccccccchhHHHhhhccCcchhHHHHHHHHhhcccccccCcccc
Q psy4738 811 PVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSATSMGPAVGIILASYSGCNKVLAVMFFAIGMGFMGFYYPSIRI 890 (1188)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (1188)
+++...+..++..++.+.+..|+|.|+++++|++..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~-------------------------------------------- 297 (465)
T TIGR00894 262 PVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGK-------------------------------------------- 297 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChH--------------------------------------------
Confidence 788888888888889999999999999999998864
Q ss_pred cccCCChhhHHHHHHHHhcccccccccccccccccccccccccccCCCCCCCcchhHHHHhhhhhhcccCCCCCCCchhh
Q psy4738 891 NSLDLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHGKQARYHWTNRAPYSFNFPLFKYVLRKHADKYNRFQDLPPTPWKE 970 (1188)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 970 (1188)
T Consensus 298 -------------------------------------------------------------------------------- 297 (465)
T TIGR00894 298 -------------------------------------------------------------------------------- 297 (465)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccchhhHHhhHhhcccchhhhhhcccchhhhccCccchhhHHHHHHHHhhhchhhHHHHhhccchhHHHHHHHHHhhh
Q psy4738 971 MATSWPVIALVITQVGHDWGLFTIAADLPKYFASNGLLSALPFLFMWIFSQGAGCLSDFIVERQWFSMTLTRKIFATAAS 1050 (1188)
Q Consensus 971 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~~~~~~i~~~~~g~lsd~~~~r~~~~~~~~r~~~~~~~~ 1050 (1188)
++|++..++.++..++..++|+++||+.+|+..++...|+.....+.
T Consensus 298 ---------------------------------~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 344 (465)
T TIGR00894 298 ---------------------------------ENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGG 344 (465)
T ss_pred ---------------------------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 45666777889999999999999999987765444444555555544
Q ss_pred hhhHHHHHhhhccCCchHHHHHHHHHHhhhhccccccccccccCCCCcchhHHHHHhhhhhhhhhhhhhhhheeecCCCc
Q psy4738 1051 MGPAVGIILASYSGCNKVLAVMFFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGLGAVSGIFSAPLIGIMTPNST 1130 (1188)
Q Consensus 1051 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 1130 (1188)
....+..+.......+....+.++.+..++.+...+.......+..|+.+|++.++.|..++++++++|.+.|.+.+..+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~ 424 (465)
T TIGR00894 345 LGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQDS 424 (465)
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCC
Confidence 33333332222222233444444444444444444555556667888999999999999999999999999999887654
Q ss_pred cchhHHHHHHHHHHHHHhhhhhheeccCccccCCCC
Q psy4738 1131 MSEWRLVFWLTFIILAVTNLFYLVFGSAEIQPWNDP 1166 (1188)
Q Consensus 1131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1166 (1188)
.++|+.+|.+.++..+++.+++..+.+.++++|+++
T Consensus 425 ~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~w~~~ 460 (465)
T TIGR00894 425 KNVWLIVFLIMAFVNILCVIFYLIFGSAERQDWAKE 460 (465)
T ss_pred chHHHHHHHHHHHHHHHHHHHeeeeecceecCCCCC
Confidence 456999999999888888888888878888888753
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=320.81 Aligned_cols=380 Identities=21% Similarity=0.285 Sum_probs=311.4
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHH
Q psy4738 6 ISQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYW 85 (1188)
Q Consensus 6 ~~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~l 85 (1188)
.+.|+.+...++++|..-|+.|.+++.+.|.|. +|.++|.+|.|++.|+|.+
T Consensus 24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~----------------------------e~~~lsk~~lG~i~s~f~i 75 (448)
T COG2271 24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALI----------------------------EDGGLSKTQLGILGSAFSI 75 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHH----------------------------HhcCCCHHHHHHHHHHHHH
Confidence 345677889999999999999999999999999 7889999999999999999
Q ss_pred HHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhh
Q psy4738 86 GYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGK 165 (1188)
Q Consensus 86 g~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~ 165 (1188)
.|+++....|.++||.++|+.+..++++.++.+++.+++ ++++.+.++.+++|..||.-+|.+..++..|+|++|||+
T Consensus 76 ~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs--~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~ 153 (448)
T COG2271 76 TYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS--PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGT 153 (448)
T ss_pred HHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCc
Confidence 999999999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHh------------
Q psy4738 166 IGSFVFAGNQIGTVFSSFLS--GFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQR------------ 231 (1188)
Q Consensus 166 ~~gi~~~~~~lG~~ig~~lg--g~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~------------ 231 (1188)
..++++++-++|..+.|++. +.+..+ .+||..|++.+++++++.++.++..+|+|++.--.+.+
T Consensus 154 ~~siWn~shNiGGal~~~~~~la~~~~~--~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~ 231 (448)
T COG2271 154 WWSIWNTSHNIGGALAPLVALLAFFAFH--GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEE 231 (448)
T ss_pred eEEEehhhhhcccchHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhh
Confidence 99999999999999999999 899888 79999999999999999999999999999863211110
Q ss_pred HHHH--------HHHH-Hhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 232 EKEY--------LADT-IGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWF 297 (1188)
Q Consensus 232 ~~~~--------~~~~-~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~l 297 (1188)
|++. ..+. ++++.. +.+.....=+++..|.|.|+.|+.|+|..+++...+..-.+++.|++++|++
T Consensus 232 ~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~Gwl 311 (448)
T COG2271 232 EKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWL 311 (448)
T ss_pred hccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 0000 0000 001000 4455555678999999999999999999999999999999999999999999
Q ss_pred HHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcch--HHHHHHHHHHHHHHHhhhhhHHHHhhcccCc-hhhHHH
Q psy4738 298 SDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCD--QILVVTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGTL 374 (1188)
Q Consensus 298 sdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~ 374 (1188)
+||+.+.+ |.....++++...++++.....+.. ....+.+++++++..+... ..-..+.|+.| +..|++
T Consensus 312 SDklfkgr-------R~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqm-LiGl~a~e~~pK~AaGtA 383 (448)
T COG2271 312 SDKLFKGR-------RGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQM-LIGLAAAEFVPKKAAGTA 383 (448)
T ss_pred HHHhcccc-------cchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHH-HHHHHHhccccHhhccch
Confidence 99998654 5666677777777777776666544 4445555666666666553 33345556666 679999
Q ss_pred HHHHHHHHhh-hhhhhhHHHHhhccCCCccchHHHHHHHHHHHHHHHHHhhhhh
Q psy4738 375 MAIVNGIGAI-SGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSDYLVS 427 (1188)
Q Consensus 375 ~g~~~~~~~l-gg~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (1188)
.|+.+.++++ |++.+....|++.|.+|.. -.|.+..+.++++.++.....+
T Consensus 384 ~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~--g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 384 TGFVGLFAYLIGAALAGLPLGYIADTWGWD--GGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred hchhhhHHHHhhHHhcCCcceeeEecCCCc--chHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 8889999999999996644 4444444444444444433333
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=333.35 Aligned_cols=358 Identities=21% Similarity=0.253 Sum_probs=279.3
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHH
Q psy4738 7 SQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWG 86 (1188)
Q Consensus 7 ~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg 86 (1188)
+.||.+..+++++++++++||.+++.+.|.|. +|+|+|..+.|++.++|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~----------------------------~~~~~s~~~~g~~~s~~~~~ 55 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMG----------------------------KDLGLSATMFGLAATLFYAA 55 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhH----------------------------hhcCCCHHHHHHHHHHHHHH
Confidence 34788999999999999999999999999998 79999999999999999999
Q ss_pred HHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhH
Q psy4738 87 YVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI 166 (1188)
Q Consensus 87 ~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~ 166 (1188)
+++++++.|+++||+|||+++..+++++++++++++++ +|++++++.|+++|++++...|....++.||+|++||+++
T Consensus 56 ~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~ 133 (412)
T TIGR02332 56 YVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFA--TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARA 133 (412)
T ss_pred HHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHH
Confidence 99999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc----cCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHhHHHHHHHH---
Q psy4738 167 GSFVFAGNQIGTVFSSFLSGFLLKY----TDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADT--- 239 (1188)
Q Consensus 167 ~gi~~~~~~lG~~ig~~lgg~l~~~----~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~~~~~~~~~--- 239 (1188)
+++++.+..+|.++++++++++.+. ...|||+.|++.++++++..+++++++||+|+++++.+++|++...+.
T Consensus 134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~ 213 (412)
T TIGR02332 134 NALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDN 213 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999998742 115999999999999988888888888998877654433332211100
Q ss_pred ----------------------Hhh---h-----hhhHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHH
Q psy4738 240 ----------------------IGC---L-----ARNKIGHDWGLFMISADLPKYMKSV-MKFSIAKNGVLSSLPFLLMW 288 (1188)
Q Consensus 240 ----------------------~~~---~-----~~~~~~~~~~~~~~~~~lp~yl~~~-~g~s~~~~g~l~~~~~l~~~ 288 (1188)
.+. . ....++.....+++.+|+|.|+++. .+++..+.+....++.++..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~ 293 (412)
T TIGR02332 214 DQLTLEQPEGAFAHAAMPQRSMLREIFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTI 293 (412)
T ss_pred ccccccccccccccccccHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHH
Confidence 000 0 0034445566788899999999883 47888999999999999999
Q ss_pred HHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcc-cC
Q psy4738 289 LTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALD-LS 367 (1188)
Q Consensus 289 ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 367 (1188)
++.++.|+++||+++|+. ..........+.+........+. .....+.....+.....+.......+ .+
T Consensus 294 ~g~l~~g~l~dr~~~r~~---------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 363 (412)
T TIGR02332 294 FGMIWWSRHSDRLKERKH---------HTALPYLFAAAGWLLASATDHNL-IQLLGIIMASMGSFSAMAIFWTTPDQSIS 363 (412)
T ss_pred HHHHHHHHHhcccCccHH---------HHHHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHhhhhhhHHHhhcccccc
Confidence 999999999999986531 11122222222222222222222 22211222111111122333344444 45
Q ss_pred chhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCccc
Q psy4738 368 PNYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLS 404 (1188)
Q Consensus 368 p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~ 404 (1188)
++.|+++.|+.|..+++|++++|.+.|.+.|..|.+.
T Consensus 364 ~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~ 400 (412)
T TIGR02332 364 LQARAIAIAVINATGNIGSALSPFLIGILKDATGSFN 400 (412)
T ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCc
Confidence 6899999999999999999999999999999987533
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=324.14 Aligned_cols=404 Identities=18% Similarity=0.207 Sum_probs=321.0
Q ss_pred HHHHHHHHHHHHhhhhheeeccccccccCCCCCCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChh
Q psy4738 531 LVFWISFGVIMITNVAYVFMGSGKIQSWNEPRHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKH 610 (1188)
Q Consensus 531 ~vf~i~a~i~l~~~l~~l~~~~~~~q~w~~~~~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~ 610 (1188)
+.+.+...+++.+...|+ .|+..+.+.|.+.+|.++|.+|+|++.+.|.++|+++....|.++||.++|+
T Consensus 26 ~r~qif~~~fiGYa~fYl----------~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~ 95 (448)
T COG2271 26 WRIQIFLSIFIGYAAFYL----------TRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRY 95 (448)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCce
Confidence 344466667777777777 6777778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHH
Q psy4738 611 TLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLT 690 (1188)
Q Consensus 611 ~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~ 690 (1188)
.+..++++.++.+++.++++ +.+.+.++-+++|..+|..+|++...+++|||++|||+..++|+++.++|..+.|++.
T Consensus 96 fm~~gLilsai~nil~Gfs~--s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~ 173 (448)
T COG2271 96 FMAFGLILSAIVNILFGFSP--SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVA 173 (448)
T ss_pred eehHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHH
Confidence 99999999999999999999 7777999999999999999999999999999999999999999999999999999999
Q ss_pred --HHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhccCCCCCCcccChhhhH--HHHHHHhhhhhhhHHhhhhhccccccc
Q psy4738 691 --GLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFISQKEMD--YLEETIGSLTRRKYVLRKHADKYNRFQ 766 (1188)
Q Consensus 691 --g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1188)
+.+..+.+ ||..|++.+++++++.+..++..+|+||+....+.||.. ..+.. +++ +
T Consensus 174 ~la~~~~~~~--w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~------------~~~------~ 233 (448)
T COG2271 174 LLAFFAFHGG--WRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIY------------EEE------K 233 (448)
T ss_pred HHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhh------------hhh------c
Confidence 88888877 999999999999999999999999999987755444332 11100 000 0
Q ss_pred cCCCCchhhhhchhhHHHHHHHHhhhhheeecCCCcccccccchhHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhccc
Q psy4738 767 DLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVH 846 (1188)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~ 846 (1188)
+.+..+.+| ..++-+++|+..|...++++.....-|++.-|.|.|+.|+.|+|..
T Consensus 234 ~~~~ls~~~-------------------------i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~ 288 (448)
T COG2271 234 ENEGLTAWQ-------------------------IFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLV 288 (448)
T ss_pred cCCCccHHH-------------------------HHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHH
Confidence 000011222 1245578999999999999999999999999999999999999964
Q ss_pred ccccccchhHHHhhhccCcchhHHHHHHHHhhcccccccCcccccccCCChhhHHHHHHHHhcccccccccccccccccc
Q psy4738 847 SATSMGPAVGIILASYSGCNKVLAVMFFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHG 926 (1188)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1188)
T Consensus 289 -------------------------------------------------------------------------------- 288 (448)
T COG2271 289 -------------------------------------------------------------------------------- 288 (448)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCCCCCCcchhHHHHhhhhhhcccCCCCCCCchhhhcccchhhHHhhHhhcccchhhhhhcccchhhhccC
Q psy4738 927 KQARYHWTNRAPYSFNFPLFKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASNG 1006 (1188)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g 1006 (1188)
+++
T Consensus 289 -----------------------------------------------------------------------------~a~ 291 (448)
T COG2271 289 -----------------------------------------------------------------------------KAN 291 (448)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 233
Q ss_pred ccchhhHHHHHHHHhhhchhhHHHHhhccchhHHHHHHHHHhhhhhhHHHHHhhhccCCc-hHH-HHHHHHHHhhhhccc
Q psy4738 1007 LLSALPFLFMWIFSQGAGCLSDFIVERQWFSMTLTRKIFATAASMGPAVGIILASYSGCN-KVL-AVMFFAIGMGFMGFY 1084 (1188)
Q Consensus 1007 ~~~~~~~~~~~i~~~~~g~lsd~~~~r~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~ 1084 (1188)
.....+-.++..|++++|++|||+.+.+ |.+..++.++...+++..+...+.+ ..+ .+.++++++...| .
T Consensus 292 ~a~~lfE~agl~G~Ll~GwlSDklfkgr-------R~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyG-P 363 (448)
T COG2271 292 WAISLFEVAGLPGTLLAGWLSDKLFKGR-------RGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYG-P 363 (448)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcccc-------cchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhh-H
Confidence 3344555889999999999999996543 5666677666666666666555433 233 3333334433333 2
Q ss_pred cccccccccCCCCcc-hhHHHHHhhhhhhh-hhhhhhhhheeecCCCccchhHHHHHHHHHHHHHhhhhhheeccCc
Q psy4738 1085 YPSIRINSLDLSPNY-AATLMAIVNGLGAV-SGIFSAPLIGIMTPNSTMSEWRLVFWLTFIILAVTNLFYLVFGSAE 1159 (1188)
Q Consensus 1085 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1159 (1188)
.........|+.|++ .|++.|....++++ |++.+....|.+.|.. +|...|.+..+..+++.++++.+.+.+
T Consensus 364 qmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~---gW~g~Fi~~~~~a~l~~lll~~~~~~~ 437 (448)
T COG2271 364 QMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTW---GWDGGFIVLSIAALLAILLLLPVWNAE 437 (448)
T ss_pred HHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecC---CCcchHHHHHHHHHHHHHHHHHHHhhc
Confidence 233455566888877 89999999999999 8889999999998884 499999888887777777766654433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=337.30 Aligned_cols=378 Identities=17% Similarity=0.165 Sum_probs=278.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHH
Q psy4738 8 QRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGY 87 (1188)
Q Consensus 8 ~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~ 87 (1188)
.++.+..+++++++..|+||.+++++.|.+. +|+|+|..+.|++.++|+++|
T Consensus 26 ~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~----------------------------~~~~~s~~~~g~~~s~~~~~~ 77 (467)
T PRK09556 26 PFMQSYLVVFIGYLTMYLIRKNFKAAQNDMI----------------------------STYGLSTTELGMIGLGFSITY 77 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhhHHHH----------------------------HhcCCCHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999999 799999999999999999999
Q ss_pred HHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHh---hhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchh
Q psy4738 88 VIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA---ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERG 164 (1188)
Q Consensus 88 ~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a---~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg 164 (1188)
++++++.|+++||+|||+++..+++++++.+++.++. ..+|++.+++.|+++|++++...|...++++||+|++||+
T Consensus 78 ~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg 157 (467)
T PRK09556 78 GVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRG 157 (467)
T ss_pred HHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcccee
Confidence 9999999999999999999999988888877766652 1278999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHhH---------H-
Q psy4738 165 KIGSFVFAGNQIGTVFSSFLSGFLLKYT-DGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQRE---------K- 233 (1188)
Q Consensus 165 ~~~gi~~~~~~lG~~ig~~lgg~l~~~~-~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~~---------~- 233 (1188)
+++|++..+..+|.++++++..++.+.. ..+||..|.+.+++++++.++++++.+|+|+++++.+++| +
T Consensus 158 ~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 237 (467)
T PRK09556 158 RFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDK 237 (467)
T ss_pred eeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhh
Confidence 9999999999999999999988877651 1269999999999999888888888888776543221111 0
Q ss_pred -----H-H----HHH-HHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 234 -----E-Y----LAD-TIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWF 297 (1188)
Q Consensus 234 -----~-~----~~~-~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~l 297 (1188)
+ . ..+ .+++... ..++.....++...|+|.|+++.+|+|..+++...+...++..++.++.|++
T Consensus 238 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~l 317 (467)
T PRK09556 238 ETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWL 317 (467)
T ss_pred ccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 000 1111111 3334445566788899999999999999999999999999999999999999
Q ss_pred HHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHhhhhhHHHHhhcccCc-hhhHHHH
Q psy4738 298 SDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQ-ILVVTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGTLM 375 (1188)
Q Consensus 298 sdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~ 375 (1188)
+||+++|+.. ............++... ..++. ...+..+.++....+...... ....|..| +.+|++.
T Consensus 318 sDr~g~r~~~--------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~~~~~~~~~-~~~~~~~p~~~~g~a~ 387 (467)
T PRK09556 318 SDLANGRRAL--------VACIALALIIFTLGVYQ-HATSEYMYLASLFALGFLVFGPQLLIG-VAAVGFVPKKAIGVAN 387 (467)
T ss_pred HHHHCCCchH--------HHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHhhHHHHHH-HHHHhhcchhhHHHHH
Confidence 9999986431 11111111111111221 22222 222333333333333222222 23335545 7899999
Q ss_pred HHHHHHHhh-hhhhhhHHHHhhcc------------CCCccchHHHHHHHHHHHHHHHHHhhh
Q psy4738 376 AIVNGIGAI-SGIISPYLIGILVP------------NNGVLSSLPFLLMWLTAIVAGWFSDYL 425 (1188)
Q Consensus 376 g~~~~~~~l-gg~i~p~l~g~l~~------------~~G~~~~~~~~~~~~~~~~~~~~~~~~ 425 (1188)
|+.|..+++ |++++|.+.|.+.| ..| +...+....++++++.+....+
T Consensus 388 gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 388 GIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTG--WAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred HHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccC--hHHHHHHHHHHHHHHHHHHHHH
Confidence 999999997 66999999999999 333 4444555555555544444333
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-32 Score=307.67 Aligned_cols=381 Identities=16% Similarity=0.134 Sum_probs=303.6
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHH
Q psy4738 5 CISQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFY 84 (1188)
Q Consensus 5 ~~~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~ 84 (1188)
..+..+..+..+.++.|....+.......+|+|. +|||+|..+.|+++|.|.
T Consensus 7 ~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA----------------------------~dl~vs~~~aG~lis~yA 58 (394)
T COG2814 7 ARKPMWLALLALALAAFAIGTTEFVPVGLLPPIA----------------------------ADLGVSEGAAGQLITAYA 58 (394)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHhchHHHH----------------------------HHcCCCHHHHHHHHHHHH
Confidence 3444567778888889999999999999999999 799999999999999999
Q ss_pred HHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchh
Q psy4738 85 WGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERG 164 (1188)
Q Consensus 85 lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg 164 (1188)
+++.++.|+...+.||+.||++++..+.++.+++++++++ +||+.+++.|++.|+..|..++...++..|..||++|+
T Consensus 59 l~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alA--p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~ 136 (394)
T COG2814 59 LGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA--PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRG 136 (394)
T ss_pred HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchh
Confidence 9999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcc-cCCCCCCCCCH-hHHHHHH-HHHh
Q psy4738 165 KIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCY-NDPASHPYISQ-REKEYLA-DTIG 241 (1188)
Q Consensus 165 ~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~-~~p~~~~~~~~-~~~~~~~-~~~~ 241 (1188)
++++++.++..++.++|.|+|.++.+. +|||+.|++.+.++++..+..+..+| +++++++..+. ++.+..+ ..+.
T Consensus 137 ~Aiaiv~~G~tlA~v~GvPLGt~ig~~--~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~~~~~~~~~~~~~~~l~~p~v~ 214 (394)
T COG2814 137 RALALVFTGLTLATVLGVPLGTFLGQL--FGWRATFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRTLLRLLRRPGVL 214 (394)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCcchhHHHHHhcCchHH
Confidence 999999999999999999999999999 99999999999999998888888887 21111111111 1111111 1111
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHH
Q psy4738 242 CLARNKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIAS 321 (1188)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~ 321 (1188)
......+....+.|...+|+-.+++++.|+|....++....++++..+|+.++|+++|| +.| + ......
T Consensus 215 ~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~---------~-~l~~~~ 283 (394)
T COG2814 215 LGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR---------R-ALIAAL 283 (394)
T ss_pred HHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cch---------h-HHHHHH
Confidence 11225566677889999999999999999999999999999999999999999999999 543 2 222333
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCchhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCC
Q psy4738 322 VGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNNG 401 (1188)
Q Consensus 322 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G 401 (1188)
......++.+.+...+.......+.+..+..............+..|+.++.+.++++...|+|-.+|..++|.++|+.|
T Consensus 284 ~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g 363 (394)
T COG2814 284 LLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALG 363 (394)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444555555555555444444444444445555566666778999999999999999999999999999999966
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhhhhccc
Q psy4738 402 VLSSLPFLLMWLTAIVAGWFSDYLVSKNI 430 (1188)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (1188)
.....+..+...+.+..+.....++++
T Consensus 364 --~~~~~~~~a~l~~~a~~~~~~~~~~~~ 390 (394)
T COG2814 364 --YAATGWVGAALLLLALLLALLSARKDR 390 (394)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344445555555555555544444333
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=308.02 Aligned_cols=340 Identities=16% Similarity=0.083 Sum_probs=257.9
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccc
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTT 146 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~ 146 (1188)
+|+|+|+++.|++.+.|.+++.+++++.|+++||+|||+++..+.+++++++++++++ +|++++++.|+++|++.+..
T Consensus 37 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~~~G~~~~~~ 114 (390)
T PRK03545 37 QSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA--WNFTVLLISRIGIAFAHAIF 114 (390)
T ss_pred hHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hhHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCC
Q psy4738 147 FPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHP 226 (1188)
Q Consensus 147 ~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~ 226 (1188)
+|...+++.|++|+|||++++|++..+..+|.+++|++++.+.++ .|||+.|++.++++++..+..+...||+|++++
T Consensus 115 ~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~--~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~ 192 (390)
T PRK03545 115 WSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY--LGWRTTFLAIGGGALITLLLLIKLLPLLPSEHS 192 (390)
T ss_pred HHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH--hcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc
Confidence 999999999999999999999999999999999999999999998 899999999999888776666666666544332
Q ss_pred CCCHhHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 227 YISQREKEYLADTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYL 301 (1188)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~ 301 (1188)
. +.+...+..++... ..++.....+....++|.|+++..|++..+.+.+.....++..++++..++++||.
T Consensus 193 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~ 268 (390)
T PRK03545 193 G----SLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH 268 (390)
T ss_pred c----hHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1 11111122221111 22333444555667888899988999999999999999999999999999999998
Q ss_pred hccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCchhhHHHHHHHHHH
Q psy4738 302 VSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGI 381 (1188)
Q Consensus 302 ~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~ 381 (1188)
++| + .. .+................+.........+.+.......+.......+..|+.+++++|..+..
T Consensus 269 ~~~---------~-~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 337 (390)
T PRK03545 269 PSG---------F-LL-IAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPDATDVAMALFSGI 337 (390)
T ss_pred chh---------H-HH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 743 1 11 222222222222222222333222222222223333344455566677888999999999999
Q ss_pred HhhhhhhhhHHHHhhccCCCccchHHHHHHHHHHHHHHHHHhhhhh
Q psy4738 382 GAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSDYLVS 427 (1188)
Q Consensus 382 ~~lgg~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (1188)
.++|..++|.+.|.+.|..|.. ..+...+.+.+++.+......+
T Consensus 338 ~~~g~~~G~~~~G~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 338 FNIGIGAGALLGNQVSLHLGLS--SIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred HHHHHHHHHHHHHHHHhccChh--HHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999998753 4455555555555555544444
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-30 Score=309.01 Aligned_cols=377 Identities=17% Similarity=0.217 Sum_probs=278.9
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHH
Q psy4738 7 SQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWG 86 (1188)
Q Consensus 7 ~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg 86 (1188)
+.|+.+...++++++..++++..++..+|.+. +++|+|..+.+++.+.+.++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~g~s~~~~g~~~~~~~~~ 70 (434)
T PRK11663 19 YWRRHILITMYLGYALFYFTRKSFNAAMPEML----------------------------ADLGLSRSDIGLLATLFYIT 70 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHH----------------------------HhcCCCHHHHHHHHHHHHHH
Confidence 34667778889999999999999999999999 68999999999999999999
Q ss_pred HHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhH
Q psy4738 87 YVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI 166 (1188)
Q Consensus 87 ~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~ 166 (1188)
+.+++++.|+++||+|||+++.++.+++++++++++++ ++++.+++.|+++|++.|..+|...+++.||+|++||+++
T Consensus 71 ~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~ 148 (434)
T PRK11663 71 YGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS--SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGW 148 (434)
T ss_pred HHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCC------CCH-----hHH--
Q psy4738 167 GSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPY------ISQ-----REK-- 233 (1188)
Q Consensus 167 ~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~------~~~-----~~~-- 233 (1188)
+++.+.+..+|.++++++++.+.+. +|||+.|++.++++++.++++.+..+|+|++.+. ..+ +++
T Consensus 149 ~~~~~~~~~~g~~~~~~~~~~l~~~--~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 226 (434)
T PRK11663 149 WAIWNTAHNVGGALIPLVVGAIALH--YGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEG 226 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccc
Confidence 9999999999999999999999988 8999999999988877766666666776543210 000 000
Q ss_pred --HHHHHHHh-----hhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 234 --EYLADTIG-----CLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYL 301 (1188)
Q Consensus 234 --~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~ 301 (1188)
....+.++ .... ..+......+.+..|+|.|+++.+|++..+++...+...++..++.++.|+++||+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~ 306 (434)
T PRK11663 227 AGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKL 306 (434)
T ss_pred cCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 00111110 1110 22333445566778999999888999999999999999999999999999999999
Q ss_pred hccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccC-chhhHHHHHHHHH
Q psy4738 302 VSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLS-PNYAGTLMAIVNG 380 (1188)
Q Consensus 302 ~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~~~g~~~~ 380 (1188)
.+|+... .+....++......++.... ..+........+.++.+..+. .........+.. ++.+|+++|+.++
T Consensus 307 ~~~~r~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~ 380 (434)
T PRK11663 307 FNGNRGP----MNLIFAAGILLSVGSLWLMP-FASYVMQAACFFTIGFFVFGP-QMLIGMAAAECSHKEAAGAATGFVGL 380 (434)
T ss_pred ccCCccH----HHHHHHHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHHHhhH-HHHHHHHHHhcccHhhHHhHHHHHHH
Confidence 5443100 11111222222222222111 111112222222222221111 112223344544 5799999999999
Q ss_pred HHhhhhhhhhHHHHhhccCCCccchHHHHHHHHHHHHHHHHHh
Q psy4738 381 IGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSD 423 (1188)
Q Consensus 381 ~~~lgg~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~~ 423 (1188)
..++|++++|.+.|++.|..| +...+...+.+.++..+...
T Consensus 381 ~~~~g~~~~p~~~g~l~~~~g--~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 381 FAYLGAALSGYPLAKVLEIWH--WTGFFVVISIAAGISALLLL 421 (434)
T ss_pred HHHHHHHHhcccHHHHHHhcc--cHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887 44455555555555444443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=318.92 Aligned_cols=381 Identities=19% Similarity=0.228 Sum_probs=270.9
Q ss_pred CCCCCCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHH
Q psy4738 559 NEPRHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLI 638 (1188)
Q Consensus 559 ~~~~~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~ 638 (1188)
|+.......|.+++|+|++.++.+++.+.|.+++++++++.|+++||+|||+++..++++++++++++++++ +.++++
T Consensus 23 d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~ 100 (412)
T TIGR02332 23 DRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFAT--GPESLY 100 (412)
T ss_pred hhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc--CHHHHH
Confidence 555556667889999999999999999999999999999999999999999999999999999999999998 567799
Q ss_pred HHHHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcC----CCCchHHHHHHHHHHHH
Q psy4738 639 VWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLT----NNYWPVVFYLFGAVAIL 714 (1188)
Q Consensus 639 ~~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~----g~gWr~~F~i~~~~~~~ 714 (1188)
+.|+++|+++++..|....++.||+|+++||+++++++.+..+|.++++.+++.+.+.. ..|||++|++.++++++
T Consensus 101 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~ 180 (412)
T TIGR02332 101 LLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVI 180 (412)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887431 12499999999999888
Q ss_pred HHHHHHhhccCCCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhh
Q psy4738 715 WFVVWLFIGYSEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLIS 794 (1188)
Q Consensus 715 ~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1188)
..+..++++||+||+.+|++++|++...+....... +.++..+..++ +....++
T Consensus 181 ~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~------------------- 234 (412)
T TIGR02332 181 LGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQL------TLEQPEGAFAH-AAMPQRS------------------- 234 (412)
T ss_pred HHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccc------ccccccccccc-ccccHHH-------------------
Confidence 777777788999988787766554433322211000 00000000000 0000000
Q ss_pred eeecCCCcccccccchhHHHHHHHHhhchhhHHHHhhcchHHHHhh-hhhcccccccccchhHHHhhhccCcchhHHHHH
Q psy4738 795 LFYLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASV-IHFSVHSATSMGPAVGIILASYSGCNKVLAVMF 873 (1188)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 (1188)
.+++.+ ++.++...+..++.....+++..++|.|+++. .|+|..
T Consensus 235 -------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~--------------------------- 279 (412)
T TIGR02332 235 -------MLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNI--------------------------- 279 (412)
T ss_pred -------HHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH---------------------------
Confidence 122222 45667777777777888889999999999873 355542
Q ss_pred HHHhhcccccccCcccccccCCChhhHHHHHHHHhcccccccccccccccccccccccccccCCCCCCCcchhHHHHhhh
Q psy4738 874 FAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHGKQARYHWTNRAPYSFNFPLFKYVLRKH 953 (1188)
Q Consensus 874 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1188)
T Consensus 280 -------------------------------------------------------------------------------- 279 (412)
T TIGR02332 280 -------------------------------------------------------------------------------- 279 (412)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCCCCCchhhhcccchhhHHhhHhhcccchhhhhhcccchhhhccCccchhhHHHHHHHHhhhchhhHHHHhh
Q psy4738 954 ADKYNRFQDLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASNGLLSALPFLFMWIFSQGAGCLSDFIVER 1033 (1188)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~~~~~~i~~~~~g~lsd~~~~r 1033 (1188)
+.+.+..++.++..++.++.|+++||+++|
T Consensus 280 --------------------------------------------------~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r 309 (412)
T TIGR02332 280 --------------------------------------------------MIGLLAAIPQFCTIFGMIWWSRHSDRLKER 309 (412)
T ss_pred --------------------------------------------------HhHHHhhHHHHHHHHHHHHHHHHhcccCcc
Confidence 455667778899999999999999999554
Q ss_pred ccchhHHHHHHHHHhhhhhhHHHHHhhhccCCchHHHHHHHHHHhhhhccccccccccccC-CCCcchhHHHHHhhhhhh
Q psy4738 1034 QWFSMTLTRKIFATAASMGPAVGIILASYSGCNKVLAVMFFAIGMGFMGFYYPSIRINSLD-LSPNYAATLMAIVNGLGA 1112 (1188)
Q Consensus 1034 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 1112 (1188)
+ ...........+++....... +.......+.....+.....+.......+ .++++|+++.|+.|..++
T Consensus 310 ~---------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~ 379 (412)
T TIGR02332 310 K---------HHTALPYLFAAAGWLLASATD-HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGN 379 (412)
T ss_pred H---------HHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhh
Confidence 3 112222222333332222222 22222211111111111111222233334 456779999999999999
Q ss_pred hhhhhhhhhheeecCCCccchhHHHHHHHHHH
Q psy4738 1113 VSGIFSAPLIGIMTPNSTMSEWRLVFWLTFII 1144 (1188)
Q Consensus 1113 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1144 (1188)
+|++++|.+.|.+.+.. ++|+..|++.++.
T Consensus 380 ~g~~~~p~~~g~i~~~~--g~~~~~~~~~~~~ 409 (412)
T TIGR02332 380 IGSALSPFLIGILKDAT--GSFNSGLWFVAAL 409 (412)
T ss_pred hhhhhhhhhcccccccC--CCCchhHHHHHHH
Confidence 99999999999998875 3488888766554
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=7e-30 Score=299.25 Aligned_cols=351 Identities=11% Similarity=0.048 Sum_probs=252.7
Q ss_pred HHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccC
Q psy4738 23 AYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFG 102 (1188)
Q Consensus 23 ~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~G 102 (1188)
+......+++.+|.+. +|||+|++|.|++.++|+++|.+++++.|+++||+|
T Consensus 3 ~~~~~~~~~~~lp~i~----------------------------~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~g 54 (368)
T TIGR00903 3 SQAIWVTFSPVLSLVA----------------------------EDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAF 54 (368)
T ss_pred hhHHHHHHHhhHHHHH----------------------------HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4455667888999998 799999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHH
Q psy4738 103 GKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSS 182 (1188)
Q Consensus 103 rk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~ 182 (1188)
||+++..++.....+.+....+ +|++++++.|+++|++++. .+.....++||+|+|||++++++...+..+|.++++
T Consensus 55 rr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~ 131 (368)
T TIGR00903 55 KRWFLFGSLATFAAAAGRLLDP--FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFAL 131 (368)
T ss_pred chHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998776665554444333333 6899999999999999986 566667779999999999999999999999999999
Q ss_pred HHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCH-hH-HHHHHHHHhhhhh-----hHHHHHHHHH
Q psy4738 183 FLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQ-RE-KEYLADTIGCLAR-----NKIGHDWGLF 255 (1188)
Q Consensus 183 ~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~-~~-~~~~~~~~~~~~~-----~~~~~~~~~~ 255 (1188)
++++++.+. .|||+.|++.++++++..+++++..||+|++++...+ ++ .+...+.+++... ..++....++
T Consensus 132 ~~~~~l~~~--~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 209 (368)
T TIGR00903 132 AAGLKIYTA--GGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEGFGFKDAVKEFGALAGRKDLWIIGAILGFGVALFD 209 (368)
T ss_pred HHHHHHHHc--cchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcchHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH
Confidence 999999998 8999999999999999888888888988765432111 11 1112222221111 5667777889
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4738 256 MISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAG 335 (1188)
Q Consensus 256 ~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~ 335 (1188)
++.+|+|+|+++ .|++.. .+....++.+...++ .++++||..||+. |+..........+..+.......
T Consensus 210 ~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~------r~~~~~~~~~~~a~~~~~~~~~~ 278 (368)
T TIGR00903 210 NLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGL------RSIYIRAAALLIAAFFLALAFEL 278 (368)
T ss_pred HHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhh------HHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999976 678864 666666666655555 5789999876542 22222222222233333333332
Q ss_pred chHHHHHHHHHHHHHHHhhhhhHHHHhhcccCc-hhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCccchHHHHHHHHH
Q psy4738 336 CDQILVVTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLT 414 (1188)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~~~~~~~~~~~ 414 (1188)
+ ....+..+.+..++.....+....+..|..| +.||+++|+.|..+++++.++|.+.+.+.. | ....+...+..
T Consensus 279 ~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~--~~~~f~~~~~~ 353 (368)
T TIGR00903 279 N-RLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--S--AEAYFTFLAIL 353 (368)
T ss_pred c-cHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--C--HHHHHHHHHHH
Confidence 2 2233334444444444455556667777666 689999999999999999999999998873 2 22334444444
Q ss_pred HHHHHHHH
Q psy4738 415 AIVAGWFS 422 (1188)
Q Consensus 415 ~~~~~~~~ 422 (1188)
.+++.+..
T Consensus 354 ~~i~~~~~ 361 (368)
T TIGR00903 354 ITIAFAIA 361 (368)
T ss_pred HHHHHHHH
Confidence 44444443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-29 Score=301.67 Aligned_cols=376 Identities=19% Similarity=0.166 Sum_probs=283.5
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHH
Q psy4738 5 CISQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFY 84 (1188)
Q Consensus 5 ~~~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~ 84 (1188)
..+++|.+..+.+...++.++|+..+++..|.+. +|+|+|+++.+++.+.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~s~~~~g~~~~~~~ 60 (406)
T PRK11551 9 SSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMA----------------------------QEFGLDVAQMGWAFSAGI 60 (406)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHhCCCHHHHHHHHHHHH
Confidence 3456788888889999999999999999999999 689999999999999999
Q ss_pred HHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchh
Q psy4738 85 WGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERG 164 (1188)
Q Consensus 85 lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg 164 (1188)
+++.+++++.|+++||+|||+++..+.++.+++.++++++ ++++.+++.|+++|++.+...|...+++.|++|+|+|+
T Consensus 61 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~ 138 (406)
T PRK11551 61 LGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA--WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRG 138 (406)
T ss_pred HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHH
Confidence 9999999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCC-HhHHHHHHHH-Hhh
Q psy4738 165 KIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYIS-QREKEYLADT-IGC 242 (1188)
Q Consensus 165 ~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~-~~~~~~~~~~-~~~ 242 (1188)
+++++.+.+..+|..+++.+++.+.+. .+||+.|++.+++.++..+...++.||+|+.++... +++++...+. .+.
T Consensus 139 ~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (406)
T PRK11551 139 TAVSLMYCGVPFGGALASVIGVLAAGD--AAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGE 216 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccc--cCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhhHHHHhhh
Confidence 999999999999999999999998888 899999999888777766666666777654322111 1111111111 110
Q ss_pred h--------hhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHH
Q psy4738 243 L--------ARNKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRK 314 (1188)
Q Consensus 243 ~--------~~~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~ 314 (1188)
. ....+......+....++|.|+++ .|++..+.+...+...++..++.++.|++.||+++|+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-------- 287 (406)
T PRK11551 217 GRATATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRV-------- 287 (406)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------
Confidence 0 012333344566777889999987 79999999999999999999999999999999986422
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcc-cCchhhHHHHHHHHHHHhhhhhhhhHHH
Q psy4738 315 IFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALD-LSPNYAGTLMAIVNGIGAISGIISPYLI 393 (1188)
Q Consensus 315 ~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~g~~~g~~~~~~~lgg~i~p~l~ 393 (1188)
..++......+++......+........+..+... ....+.......+ .++++||++.|+.+...++++.++|.+.
T Consensus 288 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~ 364 (406)
T PRK11551 288 --VLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFV-VGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLA 364 (406)
T ss_pred --HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhH
Confidence 22233333333333333332222222223333322 2233444444444 4558899999999999999999999999
Q ss_pred HhhccCCCccchHHHHHHHHHHHHHHHHHhhh
Q psy4738 394 GILVPNNGVLSSLPFLLMWLTAIVAGWFSDYL 425 (1188)
Q Consensus 394 g~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 425 (1188)
|.+.+..+.+ ...+.....+.+++.+...+.
T Consensus 365 g~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 365 GQLLALGRST-VGVIGASIPVILVAALAALLL 395 (406)
T ss_pred hhhhccCCch-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999876543 333334444444444444433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-29 Score=310.26 Aligned_cols=350 Identities=14% Similarity=0.078 Sum_probs=275.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHH
Q psy4738 8 QRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGY 87 (1188)
Q Consensus 8 ~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~ 87 (1188)
++|.++..+++++++..+|++++++++|.+. +|+|.+.++.+|+.++|.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~----------------------------~~l~~s~~~~~~~~~~~~l~~ 54 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLS----------------------------MTLGASGNELLWIIDIYSLVM 54 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHhCCCHhHHHHHHHHHHHHH
Confidence 4677888999999999999999999999999 799999999999999999999
Q ss_pred HHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhcc-CCCchhhH
Q psy4738 88 VIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWV-PPTERGKI 166 (1188)
Q Consensus 88 ~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~-p~~~Rg~~ 166 (1188)
+++++++|+++||+|||+++..+.+++++++++|+++ +|++.++++|+++|++.+...|....++.+++ |++||+++
T Consensus 55 ~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a--~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~ 132 (495)
T PRK14995 55 AGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFS--PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMA 132 (495)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999999999999999 99999999999999999999999999888876 67999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCC-CCHhHHHH----------
Q psy4738 167 GSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPY-ISQREKEY---------- 235 (1188)
Q Consensus 167 ~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~-~~~~~~~~---------- 235 (1188)
+|++.....+|..+||++++++.++ .||||+|++..+++++..++..+..|++|++++. .+..+...
T Consensus 133 ~g~~~~~~~~g~~~gp~lgg~l~~~--~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~ 210 (495)
T PRK14995 133 LGVWAAVGSGGAAFGPLVGGILLEH--FYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVY 210 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc--CChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999 8999999999988888777777777776543221 11100000
Q ss_pred -H------------------------------H----------HHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHh
Q psy4738 236 -L------------------------------A----------DTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVM 269 (1188)
Q Consensus 236 -~------------------------------~----------~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~ 269 (1188)
. + +.++.+.. ..+......++...++|.|++.++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~ 290 (495)
T PRK14995 211 SAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVH 290 (495)
T ss_pred HHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0 0 00000000 223334456677789999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhh--cchHHHHHHHHHH
Q psy4738 270 KFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYA--GCDQILVVTLFTV 347 (1188)
Q Consensus 270 g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~--~~~~~~~~~~~~~ 347 (1188)
|+|+.++|....+..++..++.++.|++.||+++|+ ....+.....+++...... ..+.........+
T Consensus 291 g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~----------~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 360 (495)
T PRK14995 291 GLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRL----------VATGGMALSALSFYGLAMTDFSTQQWQAWGLMAL 360 (495)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH----------HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 999999999999999999999999999999998642 2333444444333333222 2233333333333
Q ss_pred HHHHHhhhh-hHHHHhhcccCchhhHHHHHHHHHHHhhhhhhhhHHHHhhccC
Q psy4738 348 GMAFMGFFY-PSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPN 399 (1188)
Q Consensus 348 ~~~~~~~~~-~~~~~~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~ 399 (1188)
.+.+.+... +.........+++++|.+.++.++.+++|+.+|+.+.|.+.++
T Consensus 361 ~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 361 LGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344443 3444455556678999999999999999999999999987654
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=326.22 Aligned_cols=402 Identities=15% Similarity=0.090 Sum_probs=282.9
Q ss_pred HHHHHHHHhhhhheeeccccccccCCCCCCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHH
Q psy4738 535 ISFGVIMITNVAYVFMGSGKIQSWNEPRHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGF 614 (1188)
Q Consensus 535 i~a~i~l~~~l~~l~~~~~~~q~w~~~~~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~ 614 (1188)
+.....+.....|. ++...+...|.+++|+|++.++.|++.+.|.+++++++++.|+++||+|||+++..
T Consensus 30 i~~~~~~~~~~~y~----------~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~ 99 (467)
T PRK09556 30 SYLVVFIGYLTMYL----------IRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPF 99 (467)
T ss_pred HHHHHHHHHHHHHH----------HhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHH
Confidence 34444555555566 67777777899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh-----hcccchhHHHHHHHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHH
Q psy4738 615 GILSTAIFTILTPM-----AAYMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSL 689 (1188)
Q Consensus 615 ~~~~~~i~~ll~a~-----a~~~~~~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l 689 (1188)
+++++++.+.+.++ ++ +.+++++.|+++|++++...|....+++||+|++|||+++|+++.+..+|.++++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i 177 (467)
T PRK09556 100 LLILSAICMLGFGASLGSGSV--SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGV 177 (467)
T ss_pred HHHHHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHH
Confidence 99988888877665 45 677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcC-CCCchHHHHHHHHHHHHHHHHHHhhccCCCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccC
Q psy4738 690 TGLLLKLT-NNYWPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDL 768 (1188)
Q Consensus 690 ~g~l~~~~-g~gWr~~F~i~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (1188)
...+.+.. +.+||..|.+.++++++..+..+++.+|+||++++.+++|. ..+.. ..+ + ++ .+.
T Consensus 178 ~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~--~~~~~----~~~----~-~~-----~~~ 241 (467)
T PRK09556 178 ALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEI--FGEPI----SEE----D-KE-----TES 241 (467)
T ss_pred HHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhc--ccCcc----chh----h-hc-----ccc
Confidence 88776653 23499999999999988887777888888887765443321 00000 000 0 00 000
Q ss_pred CCCchhhhhchhhHHHHHHHHhhhhheeecCCCcccccccchhHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhccccc
Q psy4738 769 PPTPWKEMATSWPVIALVITQVVLISLFYLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSA 848 (1188)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~ 848 (1188)
++.+.++. ..++.++++.++...+..++.....++...|+|.|+++.+|+|+.
T Consensus 242 ~~~~~~~~-------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~-- 294 (467)
T PRK09556 242 TDMTKWQI-------------------------FVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKE-- 294 (467)
T ss_pred ccCcHHHH-------------------------HHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHH--
Confidence 00000110 012256777888888888888888888889999999999998864
Q ss_pred ccccchhHHHhhhccCcchhHHHHHHHHhhcccccccCcccccccCCChhhHHHHHHHHhcccccccccccccccccccc
Q psy4738 849 TSMGPAVGIILASYSGCNKVLAVMFFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHGKQ 928 (1188)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1188)
T Consensus 295 -------------------------------------------------------------------------------- 294 (467)
T PRK09556 295 -------------------------------------------------------------------------------- 294 (467)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCCCcchhHHHHhhhhhhcccCCCCCCCchhhhcccchhhHHhhHhhcccchhhhhhcccchhhhccCcc
Q psy4738 929 ARYHWTNRAPYSFNFPLFKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASNGLL 1008 (1188)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~ 1008 (1188)
+++..
T Consensus 295 ---------------------------------------------------------------------------~a~~~ 299 (467)
T PRK09556 295 ---------------------------------------------------------------------------DAINT 299 (467)
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 23444
Q ss_pred chhhHHHHHHHHhhhchhhHHHHhhccchhHHHHHHHHHhhhhhhHHHHHhhhccCCchHHH-HHHHHHHhhhhcccccc
Q psy4738 1009 SALPFLFMWIFSQGAGCLSDFIVERQWFSMTLTRKIFATAASMGPAVGIILASYSGCNKVLA-VMFFAIGMGFMGFYYPS 1087 (1188)
Q Consensus 1009 ~~~~~~~~~i~~~~~g~lsd~~~~r~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 1087 (1188)
.....++..++.+++|+++||+++|+. .............+..... ..+.... +.++.++....+....
T Consensus 300 ~~~~~~~~~ig~~~~G~lsDr~g~r~~--------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~G~~~~~~~~~- 369 (467)
T PRK09556 300 FTLFEIGALVGSLLWGWLSDLANGRRA--------LVACIALALIIFTLGVYQH-ATSEYMYLASLFALGFLVFGPQLL- 369 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCch--------HHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhhHHHH-
Confidence 556668889999999999999966541 1111111111111112211 2233222 3333333222221111
Q ss_pred ccccccCCC-CcchhHHHHHhhhhhhh-hhhhhhhhheeecCC-C--------ccchhHHHHHHHHHHHHHhhhhhheec
Q psy4738 1088 IRINSLDLS-PNYAATLMAIVNGLGAV-SGIFSAPLIGIMTPN-S--------TMSEWRLVFWLTFIILAVTNLFYLVFG 1156 (1188)
Q Consensus 1088 ~~~~~~~~~-~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1156 (1188)
......|.. ++++|+++|+.|..+++ |++++|.+.|.+.|+ . ...+|+..|++..+..+++.+..+.+.
T Consensus 370 ~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 449 (467)
T PRK09556 370 IGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIVA 449 (467)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 112223544 55699999999999997 669999999999982 1 124599999988887777776665543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-29 Score=298.14 Aligned_cols=374 Identities=14% Similarity=0.119 Sum_probs=253.4
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcc---cCChhhHHHHHHHH
Q psy4738 7 SQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEF---DWDEKTQGLILSAF 83 (1188)
Q Consensus 7 ~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~---~~s~~~~g~l~s~~ 83 (1188)
++|+..+...+++++++++|+.+++.+.|.+. +|+ +.+..+.++..+.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~----------------------------~~~~~~~~~~~~~~~~~~~~ 69 (432)
T PRK10406 18 RRRIWAIVGASSGNLVEWFDFYVYSFCSLYFA----------------------------HIFFPSGNTTTQLLQTAGVF 69 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHhCCCCCchHHHHHHHHHH
Confidence 45666677778899999999999999999998 455 35566555555555
Q ss_pred HHHHH---HhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHH--------HHHHHHHHHHhhhccchhHHHH
Q psy4738 84 YWGYV---IMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSAN--------WLIALRFFEGLGEGTTFPALNT 152 (1188)
Q Consensus 84 ~lg~~---i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~--------~lli~R~l~Glg~g~~~p~~~~ 152 (1188)
.+++. ++++++|+++||+|||+++..+++++++++++++++ +++. .++++|+++|+++|..+|...+
T Consensus 70 ~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~ 147 (432)
T PRK10406 70 AAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACL--PGYETIGTWAPALLLLARLFQGLSVGGEYGTSAT 147 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhc--CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHH
Confidence 55555 999999999999999999999999999999999998 7654 6999999999999999999999
Q ss_pred HHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhc------cCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCC
Q psy4738 153 LLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY------TDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHP 226 (1188)
Q Consensus 153 li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~------~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~ 226 (1188)
+++||+|++||+++.++...+...|.++++.+...+... ..+|||++|++.++++++... +....||+|+.++
T Consensus 148 ~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~~~~~~ 226 (432)
T PRK10406 148 YMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALW-LRRQLDETSQQET 226 (432)
T ss_pred HHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHH-HHhcCCCCchHHH
Confidence 999999999999999999999889998888776665421 027999999988777765432 2233444433211
Q ss_pred CCCHhHHHHHHHHHhhhhh-----hH-HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 227 YISQREKEYLADTIGCLAR-----NK-IGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDY 300 (1188)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr 300 (1188)
.. ++++....+.++.... .. +.....++.+..|+|.|+++.+|++..+.+.......+...++.++.|+++||
T Consensus 227 ~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr 305 (432)
T PRK10406 227 RA-LKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK 305 (432)
T ss_pred hh-hcccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0111111111111111 11 22355678889999999999899999999998888888888999999999999
Q ss_pred HhccCccchhHHHHHHHHHHHHHHHHHH-HHH-HhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCc-hhhHHHHHH
Q psy4738 301 LVSKDIFSVTVIRKIFTTIASVGPASGV-ILA-SYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGTLMAI 377 (1188)
Q Consensus 301 ~~~r~~l~~~~~r~~~~~i~~~~~~~~l-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~ 377 (1188)
+++|+. ....+........ +.. .....+......++.+..+..+...+.......|..| +.|++++|+
T Consensus 306 ~grr~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~ 376 (432)
T PRK10406 306 IGRRTS---------MLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGL 376 (432)
T ss_pred cCchHH---------HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhH
Confidence 997532 1111111111111 111 1111122222222333333333333445555666665 789999999
Q ss_pred HHHHHhh-hhhhhhHHHHhhccCCCccchHHHHHHHHHHHHHHHHHh
Q psy4738 378 VNGIGAI-SGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSD 423 (1188)
Q Consensus 378 ~~~~~~l-gg~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~~ 423 (1188)
.+..+++ .+...|.+.+.+ +..|.+.. .+...++..++..+...
T Consensus 377 ~~~~g~~~~g~~~p~~~~~l-~~~g~~~~-~~~~~~~~~~i~~~~~~ 421 (432)
T PRK10406 377 SYAVANALFGGSAEYVALSL-KSIGMETA-FFWYVTLMAVVAFLVSL 421 (432)
T ss_pred HHHHHHHHHHhHHHHHHHHH-HHhCCCcH-HHHHHHHHHHHHHHHHH
Confidence 9988776 355688888854 65665433 33333344444433333
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-29 Score=295.54 Aligned_cols=363 Identities=14% Similarity=0.139 Sum_probs=261.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHH
Q psy4738 9 RYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYV 88 (1188)
Q Consensus 9 r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~ 88 (1188)
.|.....++++.+..... ..+++++|.+. +|+|+|.++.+++.|.|.+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~~~~lp~i~----------------------------~~~~~s~~~~g~~~s~~~~~~~ 58 (393)
T PRK09705 8 NFMLLVLVLIGLNMRPLL-TSVGPLLPQLR----------------------------QASGMSFSVAALLTALPVVTMG 58 (393)
T ss_pred HHHHHHHHHHHHHcchhh-hccchhHHHHH----------------------------HHhCCCHHHHHHHHHHHHHHHH
Confidence 444444444444433333 77889999999 7999999999999999999999
Q ss_pred HhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHH
Q psy4738 89 IMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS 168 (1188)
Q Consensus 89 i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~g 168 (1188)
+++++.|+++||+|||+++..+++++++++++++++ +|++.+++.|+++|++.+...+....++.||+| +||+++++
T Consensus 59 l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a--~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g 135 (393)
T PRK09705 59 GLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY--PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMG 135 (393)
T ss_pred HHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC--cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHH
Confidence 999999999999999999999999999999999999 999999999999999999999999999999997 88999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCC-CCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHhHHHHHH-HHHhhhhhh
Q psy4738 169 FVFAGNQIGTVFSSFLSGFLLKYTDG-DWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLA-DTIGCLARN 246 (1188)
Q Consensus 169 i~~~~~~lG~~ig~~lgg~l~~~~~~-gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~ 246 (1188)
++.++..+|..+++++++.+.++ . +||+.+.+.++..++....++...++.|++++..+.+.++... +........
T Consensus 136 ~~~~~~~~g~~~g~~~~~~l~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 213 (393)
T PRK09705 136 LWSAALMGGGGLGAAITPWLVQH--SETWYQTLAWWALPAVVALFAWWWQSAREVASSHKTTTTPVRVVFTPRAWTLGVY 213 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcCCcccccCHhHHHHHHH
Confidence 99999999999999999999887 4 8999998877766555444444434433322111000000000 000001113
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHH
Q psy4738 247 KIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPAS 326 (1188)
Q Consensus 247 ~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~ 326 (1188)
.+.....++....|+|.|+++ +|++..+.|...++..++..++++..+++.||.++|+. ..++......
T Consensus 214 ~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~----------~~~~~~l~~~ 282 (393)
T PRK09705 214 FGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKL----------LMLALVLQLV 282 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHH----------HHHHHHHHHH
Confidence 334455677888999999987 89999999999999999999999999999999986432 2223333333
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHH-hhcccC-chhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCccc
Q psy4738 327 GVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKV-NALDLS-PNYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLS 404 (1188)
Q Consensus 327 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~ 404 (1188)
+.......+.+.... .... ...+.+...+.... ...+.+ ++++|+..|+.+..+++++.++|.+.|++.|..|++
T Consensus 283 ~~~~~~~~~~~~~~~-~~~l-~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~- 359 (393)
T PRK09705 283 GFCGFIWLPLQLPVL-WAMV-CGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNY- 359 (393)
T ss_pred HHHHHHHccchHHHH-HHHH-HHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-
Confidence 332222222222111 1122 22223333343333 334444 368999999999999999999999999999998854
Q ss_pred hHHHHHHHHHHHHHH
Q psy4738 405 SLPFLLMWLTAIVAG 419 (1188)
Q Consensus 405 ~~~~~~~~~~~~~~~ 419 (1188)
...+....+++++..
T Consensus 360 ~~~~~~~~~~~~~~~ 374 (393)
T PRK09705 360 LMDWAFHALCVVGLM 374 (393)
T ss_pred hHHHHHHHHHHHHHH
Confidence 444444444444333
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-30 Score=290.18 Aligned_cols=380 Identities=18% Similarity=0.196 Sum_probs=297.2
Q ss_pred cccchhHHHHHHHHHHHHHhhhhheeeccccccccCCCCCCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhh
Q psy4738 524 STMLEWRLVFWISFGVIMITNVAYVFMGSGKIQSWNEPRHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLA 603 (1188)
Q Consensus 524 ~t~~~wr~vf~i~a~i~l~~~l~~l~~~~~~~q~w~~~~~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~ 603 (1188)
+++..|..++......+.....-+. ..--+|++.+|+|+|..+.|+..|.|.++++++.|+...+.
T Consensus 7 ~~~~~~~~l~aLa~~~F~igttEfv--------------~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt 72 (394)
T COG2814 7 ARKPMWLALLALALAAFAIGTTEFV--------------PVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLT 72 (394)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHH--------------HHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777766666665554444 22346899999999999999999999999999999999999
Q ss_pred hhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHH
Q psy4738 604 QKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGT 683 (1188)
Q Consensus 604 Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~ 683 (1188)
||+.||++++..+.+|.++++++++++ +++.++++|++.|+..|..++....+..+..||++|++++++..++..++.
T Consensus 73 ~r~~Rr~lLl~~l~lFi~~n~l~alAp--~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~ 150 (394)
T COG2814 73 GRLERRRLLLGLLALFIVSNLLSALAP--SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLAT 150 (394)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999 556699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhcc-C-CCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhcc
Q psy4738 684 VISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGY-S-EPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADK 761 (1188)
Q Consensus 684 ~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~-~-~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (1188)
++|.++|.++.+..| ||+.|+..++++++..+..+..+| + .+++++...+++
T Consensus 151 v~GvPLGt~ig~~~G--WR~~F~~ia~l~ll~~~~~~~~lP~~~~~~~~~~~~~~~------------------------ 204 (394)
T COG2814 151 VLGVPLGTFLGQLFG--WRATFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRTL------------------------ 204 (394)
T ss_pred HHhccHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCcchhHH------------------------
Confidence 999999999999999 999999999999999888888887 1 122111000000
Q ss_pred ccccccCCCCchhhhhchhhHHHHHHHHhhhhheeecCCCcccccccchhHHHHHHHHhhchhhHHHHhhcchHHHHhhh
Q psy4738 762 YNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASVI 841 (1188)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 841 (1188)
.+.++++.++...+..+....+.|+...++-.+++++.
T Consensus 205 ------------------------------------------~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~ 242 (394)
T COG2814 205 ------------------------------------------LRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVA 242 (394)
T ss_pred ------------------------------------------HHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHcc
Confidence 11345566666667777777888888999999999999
Q ss_pred hhcccccccccchhHHHhhhccCcchhHHHHHHHHhhcccccccCcccccccCCChhhHHHHHHHHhccccccccccccc
Q psy4738 842 HFSVHSATSMGPAVGIILASYSGCNKVLAVMFFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGVQIFVDDGIRTR 921 (1188)
Q Consensus 842 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 921 (1188)
|+|..+++
T Consensus 243 g~s~~~vs------------------------------------------------------------------------ 250 (394)
T COG2814 243 GFSVSAVS------------------------------------------------------------------------ 250 (394)
T ss_pred CCCHhHHH------------------------------------------------------------------------
Confidence 99986432
Q ss_pred ccccccccccccccCCCCCCCcchhHHHHhhhhhhcccCCCCCCCchhhhcccchhhHHhhHhhcccchhhhhhcccchh
Q psy4738 922 DLLHGKQARYHWTNRAPYSFNFPLFKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKY 1001 (1188)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ 1001 (1188)
T Consensus 251 -------------------------------------------------------------------------------- 250 (394)
T COG2814 251 -------------------------------------------------------------------------------- 250 (394)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCccchhhHHHHHHHHhhhchhhHHHHhhccchhHHHHHHHHHhhhhhhHHHHHhhhccCCchHHHHHHHHHHhhhh
Q psy4738 1002 FASNGLLSALPFLFMWIFSQGAGCLSDFIVERQWFSMTLTRKIFATAASMGPAVGIILASYSGCNKVLAVMFFAIGMGFM 1081 (1188)
Q Consensus 1002 ~~~~g~~~~~~~~~~~i~~~~~g~lsd~~~~r~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1081 (1188)
+....+.+++.+|+.++|+++|| +.|+ .........++.+..+.+...+.......+.+..+..
T Consensus 251 -----~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~----------~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~ 314 (394)
T COG2814 251 -----LVLLAFGIAGFIGNLLGGRLADR-GPRR----------ALIAALLLLALALLALTFTGASPALALALLFLWGFAF 314 (394)
T ss_pred -----HHHHHHHHHHHHHHHHHhhhccc-cchh----------HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 33444458899999999999999 3332 2333334444555555555555555555444433334
Q ss_pred ccccccccccccCCCCcchhHHHHHhhhhhhhhhhhhhhhheeecCCCccchhHHHHHHHHHHHHHhhhhhheeccC
Q psy4738 1082 GFYYPSIRINSLDLSPNYAATLMAIVNGLGAVSGIFSAPLIGIMTPNSTMSEWRLVFWLTFIILAVTNLFYLVFGSA 1158 (1188)
Q Consensus 1082 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1158 (1188)
............+..|+.+..+.++++..-|+|-.+|..+.|.+.|+. ++....+..+.+.+.+.++.+...++
T Consensus 315 ~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~---g~~~~~~~~a~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 315 SPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDAL---GYAATGWVGAALLLLALLLALLSARK 388 (394)
T ss_pred hhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444555555667899999999999999999999999999999984 48888998888888887776655443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-28 Score=294.47 Aligned_cols=375 Identities=18% Similarity=0.206 Sum_probs=265.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHH
Q psy4738 8 QRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGY 87 (1188)
Q Consensus 8 ~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~ 87 (1188)
++|.++...++.+...+++|.+++...|.+. ++ |+|..+.+++.+++.+++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~----------------------------~~-g~s~~~~g~~~~~~~i~~ 76 (452)
T PRK11273 26 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLV----------------------------EQ-GFSRGDLGFALSGISIAY 76 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----------------------------Hc-CCCHHHHHHHHHHHHHHH
Confidence 4566667777888999999999999999988 56 999999999999999999
Q ss_pred HHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhh--hccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhh
Q psy4738 88 VIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA--RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGK 165 (1188)
Q Consensus 88 ~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~--~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~ 165 (1188)
+++++++|+++||+|||+++..+.+++++++++++++. ..+++.+++.|+++|++++..+|.....+.||+|+|+|++
T Consensus 77 ~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~ 156 (452)
T PRK11273 77 GFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGG 156 (452)
T ss_pred HHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHH
Confidence 99999999999999999999999999999999888762 1378889999999999999999988899999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHh-------------
Q psy4738 166 IGSFVFAGNQIGTVF-SSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQR------------- 231 (1188)
Q Consensus 166 ~~gi~~~~~~lG~~i-g~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~------------- 231 (1188)
++++++.+..+|..+ +|+++..+... .|||+.|++.++++++..++..++.+|+|++....+++
T Consensus 157 ~~~~~~~~~~~g~~~~~~l~~~~~~~~--~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (452)
T PRK11273 157 IVSVWNCAHNVGGGLPPLLFLLGMAWF--NDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEK 234 (452)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccc
Confidence 999999999998754 55544444444 58999999999888887777777777776542111000
Q ss_pred --HHHHHHH----HH-hhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 232 --EKEYLAD----TI-GCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSD 299 (1188)
Q Consensus 232 --~~~~~~~----~~-~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsd 299 (1188)
++...++ .. +.... ..++.....+....++|.|++++.|++..+.+....+..++..++.++.|+++|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~d 314 (452)
T PRK11273 235 HEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD 314 (452)
T ss_pred cCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000111 11 11111 233344456778889999999999999999999998889999999999999999
Q ss_pred HHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhc-chHH-HHHHHHHHHHHHHhhhhhHHHHhhccc-CchhhHHHHH
Q psy4738 300 YLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAG-CDQI-LVVTLFTVGMAFMGFFYPSLKVNALDL-SPNYAGTLMA 376 (1188)
Q Consensus 300 r~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~~~g 376 (1188)
|+++++. +...........+.++...... .+.. ..+..+.++....+.. ........+. +++.+|+++|
T Consensus 315 r~~~~r~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~p~~~~g~~~g 386 (452)
T PRK11273 315 KVFRGNR-------GATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPV-MLIGLHALELAPKKAAGTAAG 386 (452)
T ss_pred HHccCCc-------chHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHH-HHHHHHHHHHcChhhhhhHHH
Confidence 9964321 1111111111111222111111 1222 2222222332222211 1222233344 4578999999
Q ss_pred HHHHHHhhhhhh-hhHHHHhhccCCCccchHHHHHHHHHHHHHHHHHh
Q psy4738 377 IVNGIGAISGII-SPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSD 423 (1188)
Q Consensus 377 ~~~~~~~lgg~i-~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~~ 423 (1188)
+.+...++++.+ +|.+.|.+.|..| +...+.+....++++.+...
T Consensus 387 ~~~~~~~~g~~~~g~~v~g~l~~~~g--~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 387 FTGLFGYLGGSVAASAIVGYTVDFFG--WDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhc--chHHHHHHHHHHHHHHHHHH
Confidence 999999998775 7999999999988 44445555555555544444
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-28 Score=296.99 Aligned_cols=352 Identities=16% Similarity=0.160 Sum_probs=245.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhh----HHH--HHHHH
Q psy4738 10 YILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKT----QGL--ILSAF 83 (1188)
Q Consensus 10 ~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~----~g~--l~s~~ 83 (1188)
+.+.....+++++.++|...++.+.|.+. ++|+.+.++ .+. +.+++
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 66 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALG----------------------------KVFFPGADPSVQMIAALATFSVP 66 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HhhCCCCCcHHHHHHHHHHHHHH
Confidence 45667778899999999999999999998 455432211 222 25888
Q ss_pred HHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHH--------HHHHHHHHHhhhccchhHHHHHHh
Q psy4738 84 YWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANW--------LIALRFFEGLGEGTTFPALNTLLA 155 (1188)
Q Consensus 84 ~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~--------lli~R~l~Glg~g~~~p~~~~li~ 155 (1188)
++++.++++++|+++||+|||+++..+++++++++++++++ +|+++ ++++|+++|++.|+.+|...+++.
T Consensus 67 ~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~--~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~ 144 (490)
T PRK10642 67 FLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLI--PSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVA 144 (490)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 88875 899999999999999999999999
Q ss_pred hccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhc------cCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Q psy4738 156 QWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY------TDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYIS 229 (1188)
Q Consensus 156 ~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~------~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~ 229 (1188)
||+|+++|+++.++...+..+|..+++.+...+... ..+|||++|++.++++++ .++.....||+|+.++...
T Consensus 145 e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~ 223 (490)
T PRK10642 145 EYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQHVD 223 (490)
T ss_pred HhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHHHH
Confidence 999999999999999988888888888776555421 127999999997766554 3333445677654211000
Q ss_pred ---H--------hHHHHHHHHHhhhhh-------hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q psy4738 230 ---Q--------REKEYLADTIGCLAR-------NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTA 291 (1188)
Q Consensus 230 ---~--------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~ 291 (1188)
+ +++....+.++...+ ..++....++++..|+|.|+++.+|++..+.+.......++..++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~ 303 (490)
T PRK10642 224 KLEQGDREGLQDGPKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQ 303 (490)
T ss_pred hhhhhccccccccccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 000011111111101 2233445678889999999998899998888888888889999999
Q ss_pred HHHHHHHHHHhccCccchhHHHHHHHHHHHHH-HHHHHHHHHh-hcchHHHHHHHHHHHHHHHhhhhhHHHHhhcc-cCc
Q psy4738 292 IVAGWFSDYLVSKDIFSVTVIRKIFTTIASVG-PASGVILASY-AGCDQILVVTLFTVGMAFMGFFYPSLKVNALD-LSP 368 (1188)
Q Consensus 292 ~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~-~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p 368 (1188)
++.|+++||++||+. ..++.+. ....+..... ...+.........+.....+...........+ .++
T Consensus 304 ~~~g~l~dr~grr~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~ 373 (490)
T PRK10642 304 PVMGLLSDRFGRRPF----------VILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPT 373 (490)
T ss_pred HHHHHHHHHhccHHH----------HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999997532 2222211 1111111111 11222222222222222222222223333333 455
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCc
Q psy4738 369 NYAGTLMAIVNGIGAISGIISPYLIGILVPNNGV 402 (1188)
Q Consensus 369 ~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~ 402 (1188)
+.||++.|+.+....+++.++|++.+++.+..+.
T Consensus 374 ~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~ 407 (490)
T PRK10642 374 HIRYSALAAAFNISVLVAGLTPTLAAWLVESTQN 407 (490)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8899999987777888899999999999887654
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=289.86 Aligned_cols=363 Identities=25% Similarity=0.398 Sum_probs=275.8
Q ss_pred HHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhHhhHHHhh
Q psy4738 19 AVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLA 98 (1188)
Q Consensus 19 ~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~La 98 (1188)
+++..++|+..++.+.|.+. +++|+|+.+.+++.+++.+++.+++++.|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~----------------------------~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~ 53 (399)
T TIGR00893 2 VTVINYLDRANLSFAAPMLQ----------------------------EDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLL 53 (399)
T ss_pred eehHHHHHHHhhhHhHHHHH----------------------------HhhCCChhhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 46788999999999999998 68999999999999999999999999999999
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHHHHHHHHHH
Q psy4738 99 QKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGT 178 (1188)
Q Consensus 99 Dr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~ 178 (1188)
||+|||+++..+.+++++++++++++ +|++.+++.|+++|++.+...|....++.|++|+|+|++++++......+|.
T Consensus 54 d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 131 (399)
T TIGR00893 54 DRFGARKTLAVFIVIWGVFTGLQAFA--GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGG 131 (399)
T ss_pred HhcCcceeeHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHH
Confidence 99999999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHhHHHHHH---------------------
Q psy4738 179 VFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLA--------------------- 237 (1188)
Q Consensus 179 ~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~~~~~~~--------------------- 237 (1188)
++++++++.+.+. .|||+.|++.+++.++..+..++..+|+|++++...+++++...
T Consensus 132 ~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (399)
T TIGR00893 132 IIGGPLVGWILIH--FSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIK 209 (399)
T ss_pred HHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchH
Confidence 9999999999988 89999999999988888777777777776654433222221110
Q ss_pred HHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHH
Q psy4738 238 DTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVI 312 (1188)
Q Consensus 238 ~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~ 312 (1188)
+..+++.. ..+...........+.|.|+++.+|.+..+.+...+...++..++.++.++++||+++|+.....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-- 287 (399)
T TIGR00893 210 ELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVF-- 287 (399)
T ss_pred HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH--
Confidence 11111110 33444556677888999999999999999999999999999999999999999999987521100
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhccc-CchhhHHHHHHHHHHHhhhhhhhhH
Q psy4738 313 RKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDL-SPNYAGTLMAIVNGIGAISGIISPY 391 (1188)
Q Consensus 313 r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~~~g~~~~~~~lgg~i~p~ 391 (1188)
......++............ .............++.+..+ ..+.......+. +++.||++.|+.+...++++.++|.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~ 365 (399)
T TIGR00893 288 ARKTAIIAGLVLSLLMFATN-YVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPI 365 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhH
Confidence 01111111111111111111 11223333333344444444 445555555555 4578999999999999999999999
Q ss_pred HHHhhccCCCccchHHHHHHHHHHHHH
Q psy4738 392 LIGILVPNNGVLSSLPFLLMWLTAIVA 418 (1188)
Q Consensus 392 l~g~l~~~~G~~~~~~~~~~~~~~~~~ 418 (1188)
+.|.+.|..|.+. ..+...++..++.
T Consensus 366 i~g~l~~~~g~~~-~~~~~~~~~~~~~ 391 (399)
T TIGR00893 366 VIGAIAATTGSFA-GALMVVAALALIG 391 (399)
T ss_pred HhhhhccCCCchh-HHHHHHHHHHHHH
Confidence 9999999887322 3333333333333
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=314.61 Aligned_cols=395 Identities=14% Similarity=0.083 Sum_probs=285.2
Q ss_pred HHHHHHHhhhhheeeccccccccCCCCCCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHH
Q psy4738 536 SFGVIMITNVAYVFMGSGKIQSWNEPRHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFG 615 (1188)
Q Consensus 536 ~a~i~l~~~l~~l~~~~~~~q~w~~~~~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~ 615 (1188)
...+++..++..+ |++..+.+.|++.+|+|.+.++.+|+.+.|.++++++++++|+++||+|||+++..+
T Consensus 8 ~~~~~~~~~~~~l----------d~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~ 77 (495)
T PRK14995 8 LVIIVLVYIPVAI----------DATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLG 77 (495)
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3444455555555 666677788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcccchhHHHHHHHHHHhhcccchhHHHHHHHhcc-CCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4738 616 ILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWI-PKTERGKVGAFVWAGIIMGTVISSSLTGLLL 694 (1188)
Q Consensus 616 ~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g~~~p~~~~~i~~~~-~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~ 694 (1188)
.+++++++++|++++ +.++++++|+++|+|.+...|.....+.+++ |+++|++++|++.....+|.++||.+++.+.
T Consensus 78 ~~~~~~~~~~~~~a~--~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~ 155 (495)
T PRK14995 78 GTLFGLASLAAAFSP--TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL 155 (495)
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999 6677999999999999999999999898876 6789999999999999999999999999999
Q ss_pred hcCCCCchHHHHHHHHHHHHHHHHHHhhccCCCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchh
Q psy4738 695 KLTNNYWPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWK 774 (1188)
Q Consensus 695 ~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1188)
++.+ |||+|+++.+++++..++..+.+|++|++++ ++.|................ ...+. ..++
T Consensus 156 ~~~g--wr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~----~~~d~~g~~~~~~~~~~l~~-~~~~~--------~~~~- 219 (495)
T PRK14995 156 EHFY--WGSVFLINVPIVLVVMGLTARYVPRQAGRRD----QPLNLGHALMLIVAILLLVY-SAKTA--------LKGF- 219 (495)
T ss_pred ccCC--hHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC----CCCChHhHHHHHHHHHHHHH-HHHhc--------cccC-
Confidence 9888 9999999999988877777777776654321 12232222111000000000 00000 0001
Q ss_pred hhhchhhHHHHHHHHhhhhheeecCCC------cccccccchhHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhccccc
Q psy4738 775 EMATSWPVIALVITQVVLISLFYLPPT------PWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSA 848 (1188)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~ 848 (1188)
..++.++............|...+. ...+.++++.+....+..+......++...++|.|+|+++|+|+.
T Consensus 220 --~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~-- 295 (495)
T PRK14995 220 --LSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPL-- 295 (495)
T ss_pred --CchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--
Confidence 1234445544444444444443322 223688999998888888888888888889999999999999975
Q ss_pred ccccchhHHHhhhccCcchhHHHHHHHHhhcccccccCcccccccCCChhhHHHHHHHHhcccccccccccccccccccc
Q psy4738 849 TSMGPAVGIILASYSGCNKVLAVMFFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHGKQ 928 (1188)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1188)
T Consensus 296 -------------------------------------------------------------------------------- 295 (495)
T PRK14995 296 -------------------------------------------------------------------------------- 295 (495)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCCCcchhHHHHhhhhhhcccCCCCCCCchhhhcccchhhHHhhHhhcccchhhhhhcccchhhhccCcc
Q psy4738 929 ARYHWTNRAPYSFNFPLFKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASNGLL 1008 (1188)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~ 1008 (1188)
++|+.
T Consensus 296 ---------------------------------------------------------------------------~ag~~ 300 (495)
T PRK14995 296 ---------------------------------------------------------------------------EAGMF 300 (495)
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 45666
Q ss_pred chhhHHHHHHHHhhhchhhHHHHhhccchhHHHHHHHHHhhhhhhHHHHHhhhcc--CCchHHHHHHHHHHhhhhccccc
Q psy4738 1009 SALPFLFMWIFSQGAGCLSDFIVERQWFSMTLTRKIFATAASMGPAVGIILASYS--GCNKVLAVMFFAIGMGFMGFYYP 1086 (1188)
Q Consensus 1009 ~~~~~~~~~i~~~~~g~lsd~~~~r~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 1086 (1188)
..+..++..+++++.|++.||+++| .....+....+++...+... ..+.........+...+.+...+
T Consensus 301 ~~~~~~~~~~~~~~~g~l~~r~g~~----------~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~ 370 (495)
T PRK14995 301 MLPVMVASGFSGPIAGILVSRLGLR----------LVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALL 370 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCch----------HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHH
Confidence 7777788999999999999999543 23445555555554433322 12222222222222222333333
Q ss_pred -cccccccCCCCcchhHHHHHhhhhhhhhhhhhhhhheeecC
Q psy4738 1087 -SIRINSLDLSPNYAATLMAIVNGLGAVSGIFSAPLIGIMTP 1127 (1188)
Q Consensus 1087 -~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 1127 (1188)
.......+.++++++.++++.|+.+++|+.+|+.+.|.+.+
T Consensus 371 ~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 371 ASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445667779999999999999999999999888754
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=289.92 Aligned_cols=354 Identities=16% Similarity=0.162 Sum_probs=269.2
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHH
Q psy4738 7 SQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWG 86 (1188)
Q Consensus 7 ~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg 86 (1188)
+.|+.+....++++++...+...++..+|++. +|+|+|+++.+++.+.+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~----------------------------~~~~~s~~~~g~~~s~~~~~ 54 (394)
T PRK03699 3 SNRIKLTWISFLSYALTGALVIVTGMVMGPIA----------------------------EYFNLPVSSMSNTFTFLNAG 54 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhHHHH----------------------------HHhCCCHHHHHHHHHHHHHH
Confidence 45677888888999999999999999999999 78999999999999999999
Q ss_pred HHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhH
Q psy4738 87 YVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI 166 (1188)
Q Consensus 87 ~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~ 166 (1188)
+.++++++|+++||+|||+++..+.++.++++++++++ ++++.+++.|+++|++.|...+...+++.|++|+++|+++
T Consensus 55 ~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~ 132 (394)
T PRK03699 55 ILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS--HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSR 132 (394)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc--chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHH
Confidence 99999999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-ccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHh-H-HHHHHHHHhhh
Q psy4738 167 GSFVFAGNQIGTVFSSFLSGFLLK-YTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQR-E-KEYLADTIGCL 243 (1188)
Q Consensus 167 ~gi~~~~~~lG~~ig~~lgg~l~~-~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~-~-~~~~~~~~~~~ 243 (1188)
++.......+|..++|++.+.+.+ . .|||++|++.+.+.++..+++++..++++++++..+++ + +....+.....
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~~--~gw~~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (394)
T PRK03699 133 LLFTDSFFSMAGMIFPIIAAYLLARS--IEWYWVYACIGLVYVAIFILTLFSEFPALGKHAPKADKPVAKEKWGIGVLFL 210 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHHHHhcCCccccccCccccCccccccCChHHHHH
Confidence 999999999999999999888764 4 69999999988887766554443221111111110000 0 00000000001
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Q psy4738 244 ARNKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVG 323 (1188)
Q Consensus 244 ~~~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~ 323 (1188)
....++.....+.+..|+|.|+++.+|+|..+.+.+.+...++..++.++.++++||+++|+. .. .....
T Consensus 211 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~---------l~-~~~~~ 280 (394)
T PRK03699 211 AIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRI---------LT-VLAGL 280 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhH---------HH-HHHHH
Confidence 113344455667888999999999999999999999999999999999999999999987542 11 22222
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCchhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCcc
Q psy4738 324 PASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVL 403 (1188)
Q Consensus 324 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~ 403 (1188)
..+.+......++.....+..+..+ ...+...+.......+..|+.++...+..+...++|+.++|.+.|++.|..|..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~G-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~ 359 (394)
T PRK03699 281 ALVLMYLFVNTDDPSHLLYAILGLG-FFSSAIYTTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQ 359 (394)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCch
Confidence 2222333333333333333333333 333344455555555666777788889999999999999999999999988753
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-28 Score=287.25 Aligned_cols=367 Identities=14% Similarity=0.112 Sum_probs=263.0
Q ss_pred HHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhHh
Q psy4738 13 GFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHI 92 (1188)
Q Consensus 13 ~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~~ 92 (1188)
+..+.+..+.....+..+++.+|.+. +|+|+|.++.+++.+.+.+++.++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~----------------------------~~~g~s~~~~g~~~s~~~~~~~~~~~ 56 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELA----------------------------HDVGISIPAAGHMISYYALGVVVGAP 56 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHH----------------------------HHcCCCHHHHhHHHHHHHHHHHHHHH
Confidence 34455677778888888888999998 78999999999999999999999999
Q ss_pred hHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHHHH
Q psy4738 93 PGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFA 172 (1188)
Q Consensus 93 ~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~~ 172 (1188)
++|+++||+|||+++..+.++++++.++++++ +|++++++.|+++|++.+...+....++.|++|++||++++++...
T Consensus 57 ~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (382)
T PRK10091 57 IIALFSSRYSLKHILLFLVALCVIGNAMFTLS--SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVS 134 (382)
T ss_pred HHHHHHccCccHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHH
Confidence 99999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHhHHHHHHHHHhhhhh-----hH
Q psy4738 173 GNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLAR-----NK 247 (1188)
Q Consensus 173 ~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-----~~ 247 (1188)
+..+|..++|++++.+.+. .|||++|++.+++.++..+..++..||.+++++. +.++ .. +.+++... ..
T Consensus 135 ~~~~g~~~g~~l~~~l~~~--~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~--~~-~~~~~~~~~~~~~~~ 208 (382)
T PRK10091 135 GMTVANLLGIPLGTYLSQE--FSWRYTFLLIAVFNIAVLASIYFWVPDIRDEAKG-GLRE--QF-HFLRSPAPWLIFAAT 208 (382)
T ss_pred HHHHHHHHhccHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHhCCCCCccccc-CHHH--HH-HHhcChHHHHHHHHH
Confidence 9999999999999999988 8999999999988877766666666765443221 1111 11 11111111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHH
Q psy4738 248 IGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASG 327 (1188)
Q Consensus 248 ~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~ 327 (1188)
+....+.+....++|.|+++.+|++..+.+.......++..++.++.+++.||+++|+. ...+....+++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~----------~~~~~~~~~i~ 278 (382)
T PRK10091 209 MFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRI----------AAVTDFIIVLA 278 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhH----------HHHHHHHHHHH
Confidence 22233444555677888888899999999999999999999999999999999987542 12222222333
Q ss_pred HHHHHhhcchHHH-HHHHHHHHHHHHhhhhhHHHHhhcccCc-hhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCccch
Q psy4738 328 VILASYAGCDQIL-VVTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLSS 405 (1188)
Q Consensus 328 l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~~ 405 (1188)
++......++... ....+..+.+..+...+.......+..+ +.++.+ ..+...++|.+++|.+.|.+.|..+.+..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~ 356 (382)
T PRK10091 279 LLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNY 356 (382)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcch
Confidence 3222222222222 2222222222223333333333333333 445544 34778899999999999999997654333
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q psy4738 406 LPFLLMWLTAIVAGWFSDYLVS 427 (1188)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~ 427 (1188)
..........+....+.....+
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~ 378 (382)
T PRK10091 357 VALPAALLSFAAMSSLLLYGRY 378 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3333333333333333333333
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-28 Score=292.73 Aligned_cols=352 Identities=13% Similarity=0.110 Sum_probs=242.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHH-HHH--H
Q psy4738 8 QRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLIL-SAF--Y 84 (1188)
Q Consensus 8 ~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~-s~~--~ 84 (1188)
.|+.....++++.++.++||.+++++.|.+. +|++.++.+.+.+. +.+ .
T Consensus 12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~----------------------------~~~~~~~~~~~~~~~~~~~~~ 63 (434)
T PRK15075 12 SKARAILRVTSGNFLEMFDFFLFGFYATAIA----------------------------KTFFPAGNEFASLMLTFAVFG 63 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHhCCCCCchHHHHHHHHHHH
Confidence 4556788889999999999999999999999 68888887765443 332 2
Q ss_pred HHH---HHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHH--------HHHHHHHHHHhhhccchhHHHHH
Q psy4738 85 WGY---VIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSAN--------WLIALRFFEGLGEGTTFPALNTL 153 (1188)
Q Consensus 85 lg~---~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~--------~lli~R~l~Glg~g~~~p~~~~l 153 (1188)
.++ .+++++.|+++||+|||+++..+.+++++++++++++ ++++ .+++.|+++|++.+..+|....+
T Consensus 64 ~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~ 141 (434)
T PRK15075 64 AGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFV--PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVY 141 (434)
T ss_pred HHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHH
Confidence 223 4789999999999999999999999999999999999 8877 46899999999999999999999
Q ss_pred HhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh--------hccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCC
Q psy4738 154 LAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLL--------KYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASH 225 (1188)
Q Consensus 154 i~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~--------~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~ 225 (1188)
++||+|+++|++++++...+..+|..+++.+++.+. +. .|||++|++..... +. .++..++.||++
T Consensus 142 ~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~--~gWr~~f~~~~~~~-~~---~~~~~~~~~e~~ 215 (434)
T PRK15075 142 LAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAE--WGWRIPFLIGCLIV-PF---IFLIRRSLEETE 215 (434)
T ss_pred HHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhc--cchHHHHHHHHHHH-HH---HHHHHHhcCCCH
Confidence 999999999999999999998888888888888764 34 79999998754332 11 111221222221
Q ss_pred CCCCH----hHHHHHHHHHhhhhh------hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 226 PYISQ----REKEYLADTIGCLAR------NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAG 295 (1188)
Q Consensus 226 ~~~~~----~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g 295 (1188)
+...+ +.++..++..+.... ..+.....++....|+|.|+++.+|++..+.++......++..++.++.|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 295 (434)
T PRK15075 216 EFLARKHRPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGG 295 (434)
T ss_pred HHHHhhhccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10000 001111111111111 22233456677889999999999999999999999899999999999999
Q ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHH-Hhhc-chHHHHHHHHHHHHHHHhhhhhHHHHhhccc-CchhhH
Q psy4738 296 WFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILA-SYAG-CDQILVVTLFTVGMAFMGFFYPSLKVNALDL-SPNYAG 372 (1188)
Q Consensus 296 ~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~g 372 (1188)
+++||+++|+. ............+... .... .+.........+.....+...+.......|. +++.||
T Consensus 296 ~l~Dr~g~r~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg 366 (434)
T PRK15075 296 ALSDRIGRRPV---------LIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRT 366 (434)
T ss_pred HHHHHhcchHH---------HHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccc
Confidence 99999997532 2211111111111111 1111 2221222212222222333333333444454 457899
Q ss_pred HHHHHHHHHHhh-hhhhhhHHHHhhccCCCccc
Q psy4738 373 TLMAIVNGIGAI-SGIISPYLIGILVPNNGVLS 404 (1188)
Q Consensus 373 ~~~g~~~~~~~l-gg~i~p~l~g~l~~~~G~~~ 404 (1188)
++.|+.+.++.. ++.++|.+.|++.|..|+.+
T Consensus 367 ~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~ 399 (434)
T PRK15075 367 AGFSLAYSLATAIFGGFTPAISTWLIHVTGDKA 399 (434)
T ss_pred hheeHHHHHHHHHHhhhHHHHHHHHHHhcCCch
Confidence 999997666655 68899999999999988643
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-29 Score=296.05 Aligned_cols=157 Identities=15% Similarity=0.210 Sum_probs=145.9
Q ss_pred ccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHh
Q psy4738 567 EESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGL 646 (1188)
Q Consensus 567 ~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gi 646 (1188)
.|.+++|+|.|+++.+++.+.|.+++.+++++.|+++||+||||++..+.++++++++.+++++ +++++++.|+++|+
T Consensus 32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~~~G~ 109 (390)
T PRK03545 32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAW--NFTVLLISRIGIAF 109 (390)
T ss_pred hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999 67789999999999
Q ss_pred hcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhccCC
Q psy4738 647 GEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSE 726 (1188)
Q Consensus 647 g~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~~~ 726 (1188)
+.+..+|...+++.|++|++||++++|++..+..+|.++||.+++.+.+..| ||+.|++.+++.++..+..++.+||+
T Consensus 110 ~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g--w~~~f~~~~~~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 110 AHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG--WRTTFLAIGGGALITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc--HHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999998888 99999999998887766665555554
Q ss_pred C
Q psy4738 727 P 727 (1188)
Q Consensus 727 p 727 (1188)
|
T Consensus 188 ~ 188 (390)
T PRK03545 188 P 188 (390)
T ss_pred C
Confidence 3
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-27 Score=287.42 Aligned_cols=378 Identities=12% Similarity=0.085 Sum_probs=257.4
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcc--cCChhhHHHHH----
Q psy4738 7 SQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEF--DWDEKTQGLIL---- 80 (1188)
Q Consensus 7 ~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~--~~s~~~~g~l~---- 80 (1188)
++|+......++++++++.|+..++...|...+ +++ +.++. .+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---------------------------~~~~~~~~~~-~~~~~~~~~ 69 (438)
T PRK09952 18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFN---------------------------REFFPQVSPA-MGTLAAFAT 69 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HhcCCCCCcH-HHHHHHHHH
Confidence 456678888899999999999999998876542 233 44544 35443
Q ss_pred -HHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHH--------HHHHHHHHHHhhhccchhHHH
Q psy4738 81 -SAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSAN--------WLIALRFFEGLGEGTTFPALN 151 (1188)
Q Consensus 81 -s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~--------~lli~R~l~Glg~g~~~p~~~ 151 (1188)
++.+++..+++++.|+++||+|||+++..+++++++++++++++ +|+. .++++|+++|++.|..+|...
T Consensus 70 ~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~ 147 (438)
T PRK09952 70 FGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLL--PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAA 147 (438)
T ss_pred HHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Confidence 34556778899999999999999999999999999999999999 8877 588999999999999999999
Q ss_pred HHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhc------cCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCC
Q psy4738 152 TLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY------TDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASH 225 (1188)
Q Consensus 152 ~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~------~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~ 225 (1188)
.++.||+|+|||++..+....+..+|.+++..+...+.+. ..+|||++|++.+++.++. +......||+|+..
T Consensus 148 ~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~~ 226 (438)
T PRK09952 148 LLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEFE 226 (438)
T ss_pred HHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCChhHH
Confidence 9999999999999999999999999999998888776532 0269999999887765442 22222334443311
Q ss_pred CCCCH--h--HHHHHHHHHhhhhh-------hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 226 PYISQ--R--EKEYLADTIGCLAR-------NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVA 294 (1188)
Q Consensus 226 ~~~~~--~--~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~ 294 (1188)
+...+ + ++....+.+.+..+ ..++..+..+....|.|.|+++.+|++............+...++.++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~ 306 (438)
T PRK09952 227 QQQHEQAAAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCF 306 (438)
T ss_pred HHHhhcccccccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 10000 0 00001111111111 2334455678888999999999899998766666666677788889999
Q ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHH--HHHh-hcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCc-hh
Q psy4738 295 GWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVI--LASY-AGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSP-NY 370 (1188)
Q Consensus 295 g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~ 370 (1188)
|+++||++||+. .. .+.+....+.+ .... ..+..........+..+..+...+.......|..| +.
T Consensus 307 g~l~Dr~grr~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~ 376 (438)
T PRK09952 307 AWLADRFGRRRV---------YI-TGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY 376 (438)
T ss_pred HHHHHHhCchHH---------HH-HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch
Confidence 999999997532 11 22222222111 1111 11222222223333334444445555566667555 78
Q ss_pred hHHHHHHHHHHHh-hhhhhhhHHHHhhccCCCccchHHHHHHHHHHHHHHHHHhhh
Q psy4738 371 AGTLMAIVNGIGA-ISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSDYL 425 (1188)
Q Consensus 371 ~g~~~g~~~~~~~-lgg~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 425 (1188)
|+++.|+.+..+. +++.++|.+.+++.|..+..+...+....++.++..+.....
T Consensus 377 r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 377 RYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 9999999766654 899999999999999765434455555555555555544443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-28 Score=289.65 Aligned_cols=355 Identities=15% Similarity=0.101 Sum_probs=258.2
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHH
Q psy4738 6 ISQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYW 85 (1188)
Q Consensus 6 ~~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~l 85 (1188)
.++|+.....++++++...+++...+...|.+. +|+|+|+.+.+++.+.+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----------------------------~~~~~s~~~~~~~~~~~~~ 64 (426)
T PRK12307 13 TRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIK----------------------------ADLGLTDMEGAFLATAAFI 64 (426)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----------------------------HHhCCCHHHHHHHHHHHHH
Confidence 345666778889999999999999999999998 7899999999999999999
Q ss_pred HHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhh
Q psy4738 86 GYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGK 165 (1188)
Q Consensus 86 g~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~ 165 (1188)
++.+++++.|+++||+|||+++..+.+++++++++++++ ++++.++++|+++|++.+..++....++.|++|+|+|++
T Consensus 65 ~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~ 142 (426)
T PRK12307 65 GRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA--SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSK 142 (426)
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhH
Confidence 999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCC----CCHhHH-------H
Q psy4738 166 IGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPY----ISQREK-------E 234 (1188)
Q Consensus 166 ~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~----~~~~~~-------~ 234 (1188)
++++...+..+|.++++.+.+.+.+. .|||+.|++.....++ .+......||+++.++. ..++++ .
T Consensus 143 ~~~~~~~~~~lg~~~~~~l~~~l~~~--~~w~~~f~i~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (426)
T PRK12307 143 ASAFLVSGFGIGNIIAAYFMPSFAEA--YGWRAAFFVGLLPVLL-VIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSL 219 (426)
T ss_pred hhhHHHHHHhHHHHHHHHHHHHHccc--CCHHHHHHHHHHHHHH-HHHHHHHCCCChHHHHhhhhccccccccchhhhhH
Confidence 99999999999999999999999888 8999999875433222 21111112222210000 000000 0
Q ss_pred HHHHHHhhhhh--------hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q psy4738 235 YLADTIGCLAR--------NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDI 306 (1188)
Q Consensus 235 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~ 306 (1188)
...+..+.... ..+......+.+..++|.|+++ .|++..+.+...+...++..++.++.+++.||+++|+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~- 297 (426)
T PRK12307 220 SMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK- 297 (426)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-
Confidence 11111111110 1111112233466789999987 6999999999999999999999999999999998642
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH-HhhhhhHHHHhhcccCc-hhhHHHHHHHHHHHhh
Q psy4738 307 FSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAF-MGFFYPSLKVNALDLSP-NYAGTLMAIVNGIGAI 384 (1188)
Q Consensus 307 l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~l 384 (1188)
....+.+...+.++.......+..........+... .....+.......|..| +.||+++|+.+...++
T Consensus 298 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~ 368 (426)
T PRK12307 298 ---------TFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAAT 368 (426)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhH
Confidence 222333333333322222222222222222222211 11122333344455555 7899999999999999
Q ss_pred hhhhhhHHHHhhccCCCccc
Q psy4738 385 SGIISPYLIGILVPNNGVLS 404 (1188)
Q Consensus 385 gg~i~p~l~g~l~~~~G~~~ 404 (1188)
++.++|.+.|++.|..|...
T Consensus 369 ~~~~gp~~~g~l~~~~g~~~ 388 (426)
T PRK12307 369 SGTFNSMAATWLGITMGLGA 388 (426)
T ss_pred HHHHHHHHHHHHHHcccHHH
Confidence 99999999999999987533
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-29 Score=293.14 Aligned_cols=214 Identities=13% Similarity=0.058 Sum_probs=170.1
Q ss_pred CcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q psy4738 565 LPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFE 644 (1188)
Q Consensus 565 ~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~ 644 (1188)
...|.+++|+|+|+++.|++.+.|.+++.+++++.|+++||+|||+++..++..+..+.+....++ ++++++++|+++
T Consensus 12 ~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~R~l~ 89 (368)
T TIGR00903 12 PVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPF--NYEWLLACQLLA 89 (368)
T ss_pred hhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHH
Confidence 345888999999999999999999999999999999999999999987666555544433223335 667899999999
Q ss_pred HhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q psy4738 645 GLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGY 724 (1188)
Q Consensus 645 Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~ 724 (1188)
|++++. .+.....++||+|++||++++++.+.+..+|.++++++++.+.+..| ||+.|++.++++++..++.++.+|
T Consensus 90 G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g--Wr~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 90 ALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG--LQLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred HhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999996 56677777999999999999999999999999999999999999877 999999999999888777777777
Q ss_pred CCCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeecCCCccc
Q psy4738 725 SEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTPWK 804 (1188)
Q Consensus 725 ~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1188)
|+|++++. +.+. ++.. ..++
T Consensus 167 ~~p~~~~~----~~~~-~~~~-------------------------------------------------------~~~~ 186 (368)
T TIGR00903 167 ALPFQAAE----GFGF-KDAV-------------------------------------------------------KEFG 186 (368)
T ss_pred CCCCCCCC----Ccch-HHHH-------------------------------------------------------HHHH
Confidence 76543221 0000 0000 0123
Q ss_pred ccccchhHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhc
Q psy4738 805 EMATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFS 844 (1188)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s 844 (1188)
+.++++.++...+..++....++++..|+|.|+++ .|+|
T Consensus 187 ~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s 225 (368)
T TIGR00903 187 ALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLE 225 (368)
T ss_pred HHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCC
Confidence 45667778888888888888999999999999965 4555
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-27 Score=279.84 Aligned_cols=334 Identities=14% Similarity=0.103 Sum_probs=242.4
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccc
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTT 146 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~ 146 (1188)
+|+|+|+++.++..+++.+++.+++++.|+++||+|||+++..+.+++++++++++++ +|++.+++.|+++|++.+..
T Consensus 48 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~ 125 (394)
T PRK10213 48 QDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA--NSFSLLLIGRACLGLALGGF 125 (394)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH--ChHHHHHHHHHHHHHhhHHH
Confidence 7899999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred hhHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCC
Q psy4738 147 FPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHP 226 (1188)
Q Consensus 147 ~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~ 226 (1188)
.|...+++.|++|+|||++++++...+.++|.+++|++++.+.++ +|||+.|++.++++++..+......||+|++++
T Consensus 126 ~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~--~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~ 203 (394)
T PRK10213 126 WAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL--IGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPS 203 (394)
T ss_pred HHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHHHHHHCCCCCcccc
Confidence 999999999999999999999999999999999999999999998 899999999988777655544444555443221
Q ss_pred CCCHhHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 227 YISQREKEYLADTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYL 301 (1188)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~ 301 (1188)
.. ++ ...+.++++.. ..+......+....+.+.++.+.+|++..+.+.......++..++.++.+++.||.
T Consensus 204 ~~---~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~ 279 (394)
T PRK10213 204 HQ---KQ-NTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS 279 (394)
T ss_pred cc---hh-HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11 11 11111221111 22333344555566764444456899999999999999999999999999999984
Q ss_pred hccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCchhhHHHHHHHHHH
Q psy4738 302 VSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGI 381 (1188)
Q Consensus 302 ~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~ 381 (1188)
.+ +.............++..... ++.+.......+.+.+.+...+.......+..|++++...+.....
T Consensus 280 ~~----------~~l~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (394)
T PRK10213 280 VK----------LALAGAPLVLAVSALVLTLWG-SDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAV 348 (394)
T ss_pred ch----------hHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 32 222222222222222222222 2233222233333334445555555555555567777888888888
Q ss_pred HhhhhhhhhHHHHhhccCCCccchHHHHHHHHHHHHHHHH
Q psy4738 382 GAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWF 421 (1188)
Q Consensus 382 ~~lgg~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~ 421 (1188)
.++|..+||.+.|.+.|..|.. ..+...++..++..+.
T Consensus 349 ~~lg~~~G~~l~G~l~~~~g~~--~~~~~~~~~~~~~~~~ 386 (394)
T PRK10213 349 IQLANTCGAAIGGYALDNIGLT--SPLMLSGTLMLLTALL 386 (394)
T ss_pred HHHHHHHHHHHHHHHHhccChh--hHHHHHHHHHHHHHHH
Confidence 8999999999999999987743 3333343333333433
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-28 Score=287.10 Aligned_cols=359 Identities=12% Similarity=0.097 Sum_probs=266.7
Q ss_pred CCccchHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHH
Q psy4738 3 QGCISQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSA 82 (1188)
Q Consensus 3 ~~~~~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~ 82 (1188)
++..+++|.....++++++..++++..++++.|.+. +++|+|+.+.+++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------------------------~~~~~s~~~~g~~~~~ 55 (405)
T TIGR00891 4 RHLTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVA----------------------------GEFGLTTVDAASLISA 55 (405)
T ss_pred CcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHhCCChhhHHHHHHH
Confidence 345677888999999999999999999999999998 6899999999999999
Q ss_pred HHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCc
Q psy4738 83 FYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTE 162 (1188)
Q Consensus 83 ~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~ 162 (1188)
+.+++.+++++.|+++||+|||+++..+.++.++++++++++ ++++.+++.|+++|++.+..++...+++.|++|++|
T Consensus 56 ~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~ 133 (405)
T TIGR00891 56 ALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFA--PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL 133 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh
Confidence 999999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCH-h-HHHHHHHHH
Q psy4738 163 RGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQ-R-EKEYLADTI 240 (1188)
Q Consensus 163 Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~-~-~~~~~~~~~ 240 (1188)
|+++.++...+..+|.++++.+++.+.+..+.+||+.|++.++..++. ++.....||+|+.++..++ + .++...+..
T Consensus 134 ~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (405)
T TIGR00891 134 RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA-LWLRKNIPEAEDWKEKHAGKALVRTMVDILY 212 (405)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHhhhhhhhhhHHHHHh
Confidence 999999999999999999999999998872224999998865554443 3333444554331111000 0 000000000
Q ss_pred ------h-----------h----hh--h-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q psy4738 241 ------G-----------C----LA--R-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAI 292 (1188)
Q Consensus 241 ------~-----------~----~~--~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~ 292 (1188)
+ . .. . .....+........++|.|+++.+|++..+.+.+.+...++..++.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~ 292 (405)
T TIGR00891 213 GGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGC 292 (405)
T ss_pred ccchhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 00 0 11112233345567789999998999999999999999999999999
Q ss_pred HHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccC-chhh
Q psy4738 293 VAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLS-PNYA 371 (1188)
Q Consensus 293 ~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~ 371 (1188)
+.+++.||+++|+. ..++................+.........+.........+.......+.. ++.|
T Consensus 293 ~~g~l~dr~g~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (405)
T TIGR00891 293 VFGFLGDWLGRRKA----------YVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQR 362 (405)
T ss_pred HHHHHHHHhCchhh----------hHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchh
Confidence 99999999997543 112222221111111111222222222212222222223333444445554 5789
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHhhccCCCc
Q psy4738 372 GTLMAIVNGIGAISGIISPYLIGILVPNNGV 402 (1188)
Q Consensus 372 g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~ 402 (1188)
|+++|+.+...++++.++|.+.|.+.|..|.
T Consensus 363 ~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~ 393 (405)
T TIGR00891 363 AAGLGFTYQLGNLGGALAPIIGALLAQRLDE 393 (405)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999884
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-27 Score=281.64 Aligned_cols=380 Identities=15% Similarity=0.086 Sum_probs=265.9
Q ss_pred CCCCccchHH--HHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHH
Q psy4738 1 MLQGCISQRY--ILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGL 78 (1188)
Q Consensus 1 ~~~~~~~~r~--~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~ 78 (1188)
|++...|++. .....+.+..+...+....+.+++|.+. +++|.+.++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~----------------------------~~~~~~~~~~~~ 55 (413)
T PRK15403 4 MPRFFARHAATLFFPMALILYDFAAYLTTDLIQPGIINVV----------------------------RDFNADVSLAPA 55 (413)
T ss_pred CCcccccccHHHHHHHHHHHHHHHHHHHHHhhccCHHHHH----------------------------HHhCCCHHHHHH
Confidence 4454433333 3344455566778888899999999998 789999999999
Q ss_pred HHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhcc
Q psy4738 79 ILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWV 158 (1188)
Q Consensus 79 l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~ 158 (1188)
..++|+++++++++++|+++||+|||+++..+.+++++++++++++ +|++.++++|+++|++.+...+....++.|++
T Consensus 56 ~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a--~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~ 133 (413)
T PRK15403 56 SVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT--TSMTQFLIARFIQGTSICFIATVGYVTVQEAF 133 (413)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999 99999999999999999877788888999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCC-CCHhH-HHHH
Q psy4738 159 PPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPY-ISQRE-KEYL 236 (1188)
Q Consensus 159 p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~-~~~~~-~~~~ 236 (1188)
|++||++++++...+..+|+++||++++.+.++ .|||+.|++.++++++..+..++..||++++++. .+.++ .+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~--~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~~~~~~~~~~ 211 (413)
T PRK15403 134 GQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF--VHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVPFSAKSVLRDF 211 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCChHHHHHHH
Confidence 999999999999999999999999999999988 8999999999998887766555556665432211 11111 1112
Q ss_pred HHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhH
Q psy4738 237 ADTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTV 311 (1188)
Q Consensus 237 ~~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~ 311 (1188)
.+.++++.. .........+.+..+.|.++++.+|++..+.++.......+..++..+.+++.++..+++.
T Consensus 212 ~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~----- 286 (413)
T PRK15403 212 RNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRF----- 286 (413)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhH-----
Confidence 222222111 2233444566777788999999999999999999888888888887777776544333221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCchhhHHHHHHHHHHHhhhhhhhhH
Q psy4738 312 IRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPY 391 (1188)
Q Consensus 312 ~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~ 391 (1188)
......+...+.....+......++.........+...+.+...+........-.+..+|++.++.+.....+...++.
T Consensus 287 -~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~~~~~G~a~a~~~~~~~~~~~~~~~ 365 (413)
T PRK15403 287 -IWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNNLPKGTVSASLNMVILMVMAVSVE 365 (413)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 0001111111111111111111222222223333334444444454443333333345799999999999999999999
Q ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHH
Q psy4738 392 LIGILVPNNGVLSSLPFLLMWLTAIVAGWF 421 (1188)
Q Consensus 392 l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~ 421 (1188)
..+++.+.. ...++....+++.+....
T Consensus 366 ~~g~~~~~~---~~~~~~~~~~~~~~~~~~ 392 (413)
T PRK15403 366 IGRWLWFNG---GRLPFHLLAVVAGVIVVF 392 (413)
T ss_pred HHHHHHHcC---CchHHHHHHHHHHHHHHH
Confidence 999887763 344444444444443333
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-29 Score=296.65 Aligned_cols=269 Identities=20% Similarity=0.266 Sum_probs=214.0
Q ss_pred ccchhHHHHHHHHHHHHHhhhhheeeccccccccCCCCCC-CcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhh
Q psy4738 525 TMLEWRLVFWISFGVIMITNVAYVFMGSGKIQSWNEPRHL-LPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLA 603 (1188)
Q Consensus 525 t~~~wr~vf~i~a~i~l~~~l~~l~~~~~~~q~w~~~~~~-~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~ 603 (1188)
++..||....+...++......+. |+.... ...-.+++|.+...++++++.++|+++|+++++|+|.|.
T Consensus 36 ~~l~~K~dl~i~~~~~~~y~~~~~----------d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~ 105 (495)
T KOG2533|consen 36 RKLLRKLDLFILPFLCYLYFHAYL----------DKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLG 105 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc----------chhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHH
Confidence 344466666666666666666665 443322 233457799999999999999999999999999999999
Q ss_pred hhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHH
Q psy4738 604 QKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGT 683 (1188)
Q Consensus 604 Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~ 683 (1188)
||++..+.+....+.|++..+++...+ +++.+++.|++.|+.+++.+|+...+++.||+++|||+++|++.+..++|+
T Consensus 106 ~r~~ls~~l~~~~~~w~~~~~~~~~~~--s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~ 183 (495)
T KOG2533|consen 106 DRFPLSKGLSVSGILWGLFGFLTAAVH--SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGN 183 (495)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhh
Confidence 999999999999999999999998888 567799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCC----CCchHHHHHHHHHHHHHHHHHHhhccCCCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhh
Q psy4738 684 VISSSLTGLLLKLTN----NYWPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHA 759 (1188)
Q Consensus 684 ~~g~~l~g~l~~~~g----~gWr~~F~i~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (1188)
++|+++++.+.++.+ .||||.|++.|+++++..++.++.+|+.|++.+.++++|++...++.+....+.
T Consensus 184 i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~------- 256 (495)
T KOG2533|consen 184 IFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGG------- 256 (495)
T ss_pred HHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCC-------
Confidence 999999999765322 259999999999999999999999999999988888777766544433211100
Q ss_pred ccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeecCCCcccccccchhHHHHHHHHhhchhhHHHHhhcchHHHHh
Q psy4738 760 DKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFAS 839 (1188)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 839 (1188)
...+.++.+++ +.++++.++...+..++.....+++..|+|+|+++
T Consensus 257 ----~~~~~~~~~~~------------------------------~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~ 302 (495)
T KOG2533|consen 257 ----IENKFKWKGFK------------------------------EALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKS 302 (495)
T ss_pred ----cccccCHHHHH------------------------------HHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHc
Confidence 00012223334 44555566666677778888889999999999998
Q ss_pred hhhhccc
Q psy4738 840 VIHFSVH 846 (1188)
Q Consensus 840 ~~~~s~~ 846 (1188)
..|+|..
T Consensus 303 ~~~~s~~ 309 (495)
T KOG2533|consen 303 NGGYSEL 309 (495)
T ss_pred CCCcChH
Confidence 6667754
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-28 Score=284.18 Aligned_cols=360 Identities=15% Similarity=0.135 Sum_probs=264.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHh
Q psy4738 11 ILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIM 90 (1188)
Q Consensus 11 ~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~ 90 (1188)
.+..+.++.....+..+...++..|.+. +|+|+|.++.+++.+++.+++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~s~~~~g~~~s~~~~~~~~~ 54 (377)
T TIGR00890 3 WYVLVGTVIMCFTSGYVYTWTLLAPPLG----------------------------RYFGVGVTAVAIWFTLLLIGLAMS 54 (377)
T ss_pred EEEeHHHHHHHHHhhHHhhhhhHHHHHH----------------------------HHhCCCHHHHHHHHHHHHHHHHHH
Confidence 3445555566666667888999999999 789999999999999999999999
Q ss_pred HhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHH
Q psy4738 91 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 170 (1188)
Q Consensus 91 ~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~ 170 (1188)
++++|+++||+|||+++..+.++.++++++++++ +|++.+++.|+++|++.+..++.....+.+|+| |||++++++.
T Consensus 55 ~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 131 (377)
T TIGR00890 55 MPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA--DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGII 131 (377)
T ss_pred hhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHH
Confidence 9999999999999999999999999999999999 999999999999999999999999999999997 6899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCC--CHhH-HHHHHHHHhhhhh--
Q psy4738 171 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYI--SQRE-KEYLADTIGCLAR-- 245 (1188)
Q Consensus 171 ~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~--~~~~-~~~~~~~~~~~~~-- 245 (1188)
..+..+|..+++++.+.+.+. .|||+.|++.++++++..+..+++.+++|++++.. +.++ +....+..++...
T Consensus 132 ~~~~~~g~~~~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (377)
T TIGR00890 132 IGGYGLGSFILSPLITSVINL--EGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWV 209 (377)
T ss_pred HHhcchhHhHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCcccchhhhhHHHHHcCccHHH
Confidence 999999999888888888877 79999999999998888777777766544322111 1111 1111222222111
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Q psy4738 246 ---NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASV 322 (1188)
Q Consensus 246 ---~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~ 322 (1188)
..+...........+.+.|.++ ++.+..+.+.......+...++++..|++.||+++|+. ..++..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~----------~~~~~~ 278 (377)
T TIGR00890 210 LYLSFFLNAVSGLLLIGLYKPYGQS-LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKT----------MSIVFG 278 (377)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----------hhHHHH
Confidence 2222223333444566667655 78898899999999999999999999999999986532 233333
Q ss_pred HHHHHHHHHHhhcch-HHHHHHHHHHHHHHHhhhhhHHHHhhccc-CchhhHHHHHHHHHHHhhhhhhhhHHHHhhccCC
Q psy4738 323 GPASGVILASYAGCD-QILVVTLFTVGMAFMGFFYPSLKVNALDL-SPNYAGTLMAIVNGIGAISGIISPYLIGILVPNN 400 (1188)
Q Consensus 323 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~ 400 (1188)
...++.+.....+.. .........+.....+...+.......|. ++++|+++.|+.+...++|+.++|.+.|.+.|..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 358 (377)
T TIGR00890 279 ISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI 358 (377)
T ss_pred HHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444444333333322 22222222222333333344444445554 4588999999999999999999999999999988
Q ss_pred CccchHHHHHHHHHHH
Q psy4738 401 GVLSSLPFLLMWLTAI 416 (1188)
Q Consensus 401 G~~~~~~~~~~~~~~~ 416 (1188)
|+ ...+...+++.+
T Consensus 359 g~--~~~f~~~~~~~~ 372 (377)
T TIGR00890 359 GF--EYTFIVTGAFAL 372 (377)
T ss_pred ch--hhHHHHHHHHHH
Confidence 74 334444444333
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=288.23 Aligned_cols=382 Identities=12% Similarity=0.082 Sum_probs=268.9
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHH
Q psy4738 7 SQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWG 86 (1188)
Q Consensus 7 ~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg 86 (1188)
++++.........++....+....++..|.+. +|+|+|..+.+++.+.++++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------------------------~~~gls~~~~g~~~~~~~~~ 83 (476)
T PLN00028 32 RPHMRAFHLSWISFFTCFVSTFAAAPLLPIIR----------------------------DNLNLTKSDIGNAGIASVSG 83 (476)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHcCCCHHHHHHHHHHHHHH
Confidence 33445666666777888888888888899998 79999999999999999999
Q ss_pred HHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhH
Q psy4738 87 YVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI 166 (1188)
Q Consensus 87 ~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~ 166 (1188)
+.+++++.|+++||+|||+++..+.++++++.++++++ ++++.++++|+++|++.+... ....+++||+|+++|+++
T Consensus 84 ~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a 160 (476)
T PLN00028 84 SIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV--SSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTA 160 (476)
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHH
Confidence 99999999999999999999999999999999999998 899999999999999988754 456789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh----c---cCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHh----HHHH
Q psy4738 167 GSFVFAGNQIGTVFSSFLSGFLLK----Y---TDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQR----EKEY 235 (1188)
Q Consensus 167 ~gi~~~~~~lG~~ig~~lgg~l~~----~---~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~----~~~~ 235 (1188)
+|+......+|..+++.+.+.+.. . ...|||+.|++.++++++.+++++++.+|.|+++....++ ++..
T Consensus 161 ~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~ 240 (476)
T PLN00028 161 NGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRELKKSGTMPKDS 240 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchhhHHhcCcccccc
Confidence 999987777777777666655432 1 0148999999999999988888877777766543110000 0101
Q ss_pred H----HHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q psy4738 236 L----ADTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDI 306 (1188)
Q Consensus 236 ~----~~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~ 306 (1188)
. .+.++.... ..+......+.+..++|.|+.+.+|++..+++.+.+...++..+++++.|+++||+++|..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~ 320 (476)
T PLN00028 241 FSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFG 320 (476)
T ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcC
Confidence 1 111111111 1122222345567789999998899999999999999999999999999999999998643
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCchhhHHHHHHHHHHHhhhh
Q psy4738 307 FSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISG 386 (1188)
Q Consensus 307 l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~lgg 386 (1188)
.. .|+....+.....+++++...... +.......+.+...+.+...+.......++.|+++|++.|+.+..+++|+
T Consensus 321 ~~---~r~~~~~~~~~l~~i~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~ 396 (476)
T PLN00028 321 MR---GRLWALWIVQTLGGVFCIWLGRAN-SLGAAIVVMILFSIFVQAACGATFGIVPFVSRRSLGVISGLTGAGGNVGA 396 (476)
T ss_pred cc---hhHHHHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHhhhhhcccCcccChhhchhhhhhhhccccHHH
Confidence 11 144444444444333333333332 22222222222233333333444455567788999999999988888888
Q ss_pred hhhhHHHHhhccCCCccchHHHHHHHHHHHHHHHHHhhhh
Q psy4738 387 IISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSDYLV 426 (1188)
Q Consensus 387 ~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (1188)
+++|.+.+ .+..+ .+...+...+++.+++.+...+.+
T Consensus 397 ~i~~~l~~--~~~~~-~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 397 VLTQLLFF--TGSSY-STETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HHHHHHHH--hcCCc-cHhhHHHHHHHHHHHHHHHHHhee
Confidence 88887765 11112 234456666666666665554443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=296.66 Aligned_cols=381 Identities=17% Similarity=0.167 Sum_probs=263.9
Q ss_pred CCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHH
Q psy4738 563 HLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRF 642 (1188)
Q Consensus 563 ~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~ 642 (1188)
.....|.+.+++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++.++.++++++++++++++ +.+.+++.|+
T Consensus 42 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 119 (434)
T PRK11663 42 FNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSS--SLWAFALLWV 119 (434)
T ss_pred HHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHh--HHHHHHHHHH
Confidence 34456888999999999999999999999999999999999999999999999999999999999998 6677999999
Q ss_pred HHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhh
Q psy4738 643 FEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFI 722 (1188)
Q Consensus 643 l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~ 722 (1188)
+.|++.|..++....++.||+|+++||+++++++.+..+|.+++|.+++.+.+..+ ||+.|++.+++.++..+...+.
T Consensus 120 l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--w~~~f~~~~i~~~~~~~~~~~~ 197 (434)
T PRK11663 120 LNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG--WRYGMMIAGIIAIVVGLFLCWR 197 (434)
T ss_pred HHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888 9999999998877766655566
Q ss_pred ccCCCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeecCCCc
Q psy4738 723 GYSEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTP 802 (1188)
Q Consensus 723 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1188)
+||+|++.+....++.+ ++... . + ++. +.+..++++.++
T Consensus 198 ~~~~p~~~~~~~~~~~~--~~~~~----~-----~-~~~-----~~~~~~~~~~~~------------------------ 236 (434)
T PRK11663 198 LRDKPQAMGLPSVGEWR--HDALE----L-----A-QQQ-----EGAGLSRKEILT------------------------ 236 (434)
T ss_pred cCCCHhhcCCCCccccc--ccccc----c-----c-hhc-----cccCCChhhhHH------------------------
Confidence 66665432211100000 00000 0 0 000 000011111110
Q ss_pred ccccccchhHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhcccccccccchhHHHhhhccCcchhHHHHHHHHhhcccc
Q psy4738 803 WKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSATSMGPAVGIILASYSGCNKVLAVMFFAIGMGFMG 882 (1188)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 882 (1188)
+..++++.++...+..+......+++..++|.|+++..|+|+.
T Consensus 237 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~------------------------------------ 279 (434)
T PRK11663 237 -KYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLV------------------------------------ 279 (434)
T ss_pred -HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHH------------------------------------
Confidence 1134566666666666666667777888999999888888864
Q ss_pred cccCcccccccCCChhhHHHHHHHHhcccccccccccccccccccccccccccCCCCCCCcchhHHHHhhhhhhcccCCC
Q psy4738 883 FYYPSIRINSLDLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHGKQARYHWTNRAPYSFNFPLFKYVLRKHADKYNRFQD 962 (1188)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 962 (1188)
T Consensus 280 -------------------------------------------------------------------------------- 279 (434)
T PRK11663 280 -------------------------------------------------------------------------------- 279 (434)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCchhhhcccchhhHHhhHhhcccchhhhhhcccchhhhccCccchhhHHHHHHHHhhhchhhHHHHhhccchhHHHH
Q psy4738 963 LPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASNGLLSALPFLFMWIFSQGAGCLSDFIVERQWFSMTLTR 1042 (1188)
Q Consensus 963 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~~~~~~i~~~~~g~lsd~~~~r~~~~~~~~r 1042 (1188)
+.+.......+++.++.++.|+++||+.+|++.. .
T Consensus 280 -----------------------------------------~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~----~ 314 (434)
T PRK11663 280 -----------------------------------------TANSAVSMFELGGFIGALVAGWGSDKLFNGNRGP----M 314 (434)
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccH----H
Confidence 2333455566888999999999999995443100 1
Q ss_pred HHHHHhhhhhhHHHHHhhhccCCchHHH-HHHHHHHhhhhccccccccccccCCC-CcchhHHHHHhhhhhhhhhhhhhh
Q psy4738 1043 KIFATAASMGPAVGIILASYSGCNKVLA-VMFFAIGMGFMGFYYPSIRINSLDLS-PNYAATLMAIVNGLGAVSGIFSAP 1120 (1188)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~ 1120 (1188)
+.....+.....+++.... ..+.... ..++.++.+..+. .........|.. ++++|+++|+.|...++|++++|.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~ 391 (434)
T PRK11663 315 NLIFAAGILLSVGSLWLMP--FASYVMQAACFFTIGFFVFGP-QMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGY 391 (434)
T ss_pred HHHHHHHHHHHHHHHHHcc--cccHHHHHHHHHHHHHHHhhH-HHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcc
Confidence 1111222222222222211 1122221 2222222211111 111122334544 567999999999999999999999
Q ss_pred hheeecCCCccchhHHHHHHHHHHHHHhhhhhheec
Q psy4738 1121 LIGIMTPNSTMSEWRLVFWLTFIILAVTNLFYLVFG 1156 (1188)
Q Consensus 1121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1156 (1188)
+.|.+.|..+ |+..|...+++.+++.+..+...
T Consensus 392 ~~g~l~~~~g---~~~~f~~~~~~~~~~~~~~~~~~ 424 (434)
T PRK11663 392 PLAKVLEIWH---WTGFFVVISIAAGISALLLLPFL 424 (434)
T ss_pred cHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988643 88899888777777665554443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-27 Score=278.39 Aligned_cols=355 Identities=15% Similarity=0.099 Sum_probs=267.9
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHH
Q psy4738 7 SQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWG 86 (1188)
Q Consensus 7 ~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg 86 (1188)
++.+.+...+.+..++.++++..+.+.+|.+. +|+|+|+.+.++..+.+.++
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~s~~~~~~~~~~~~~~ 60 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVV----------------------------EDFNAGAEWVPTSMTAYLAG 60 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHH----------------------------HHhCCCHHHHHHHHHHHHHH
Confidence 44456677778888888999999999999988 78999999999999999999
Q ss_pred HHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhH
Q psy4738 87 YVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI 166 (1188)
Q Consensus 87 ~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~ 166 (1188)
+.+++++.|+++||+|||+++..+..+.++++++++++ ++++.+++.|+++|++.+...+...+.+.|++|+++|.+.
T Consensus 61 ~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~ 138 (406)
T PRK15402 61 GMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA--QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKI 138 (406)
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHH
Confidence 99999999999999999999999999999999999998 8999999999999999999899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCC-CHhH-HHHHHHHHhhhh
Q psy4738 167 GSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYI-SQRE-KEYLADTIGCLA 244 (1188)
Q Consensus 167 ~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~-~~~~-~~~~~~~~~~~~ 244 (1188)
+++......+|..++|++++.+.++ .|||+.|++.+++.++..+..++..||++++++.. +.++ .+...+..++..
T Consensus 139 ~~~~~~~~~~~~~~g~~i~~~l~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (406)
T PRK15402 139 TALMANVALLAPLLGPLVGAALIHV--LPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKELGRDYKLVLKNRR 216 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc--cCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHHHHHHHHHHHHcCcH
Confidence 9999988899999999999999998 89999999998888877666666666654322211 1111 111111121111
Q ss_pred h-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHH
Q psy4738 245 R-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTI 319 (1188)
Q Consensus 245 ~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i 319 (1188)
. .........+....+.|.|+++.+|++..+.+.......++..++.++.++++||+++|+. ..+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~----------~~~ 286 (406)
T PRK15402 217 FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSL----------IRM 286 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH----------HHH
Confidence 1 1122223344555678999998899999999998888888899999999999999986432 223
Q ss_pred HHHHHHHHHHHHHhh----cchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCchhhHHHHHHHHHHHhhhhhhhhHHHHh
Q psy4738 320 ASVGPASGVILASYA----GCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGI 395 (1188)
Q Consensus 320 ~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~ 395 (1188)
+......+++..... ..+.........+...+.+...+..........++++|++.+..+....++..+++.+.+.
T Consensus 287 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~ 366 (406)
T PRK15402 287 GLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKH 366 (406)
T ss_pred HHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333332222221 1222222233333333334334444444445566899999999999999999999999999
Q ss_pred hccCCCcc
Q psy4738 396 LVPNNGVL 403 (1188)
Q Consensus 396 l~~~~G~~ 403 (1188)
+.+..+..
T Consensus 367 l~~~~~~~ 374 (406)
T PRK15402 367 AYLGGGNG 374 (406)
T ss_pred cccCCchH
Confidence 99887743
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-28 Score=295.76 Aligned_cols=374 Identities=14% Similarity=0.096 Sum_probs=256.3
Q ss_pred cccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH
Q psy4738 566 PEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEG 645 (1188)
Q Consensus 566 a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~G 645 (1188)
..|.+++|+|++.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++++++ +.+.++++|+++|
T Consensus 58 ~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--s~~~l~~~r~l~G 135 (476)
T PLN00028 58 LLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS--SATGFIAVRFFIG 135 (476)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999988 5667999999999
Q ss_pred hhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh----cC---CCCchHHHHHHHHHHHHHHHH
Q psy4738 646 LGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLK----LT---NNYWPVVFYLFGAVAILWFVV 718 (1188)
Q Consensus 646 ig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~----~~---g~gWr~~F~i~~~~~~~~~~~ 718 (1188)
++.+... ....+++||+|+++||++.|+.+....+|..+++.+...+.. .. ..|||+.|++.++++++..+.
T Consensus 136 ~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~ 214 (476)
T PLN00028 136 FSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGIL 214 (476)
T ss_pred HHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 9988754 466789999999999999999988777777777666655432 10 024999999999999887777
Q ss_pred HHhhccCCCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeec
Q psy4738 719 WLFIGYSEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYL 798 (1188)
Q Consensus 719 ~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1188)
.+++.+|.|+++. ++.+ +. . +. ++.+..+
T Consensus 215 ~~~~~~~~p~~~~----~~~~---~~-------~------~~--------~~~~~~~----------------------- 243 (476)
T PLN00028 215 VLTLGQDLPDGNY----RELK---KS-------G------TM--------PKDSFSK----------------------- 243 (476)
T ss_pred HHHHcCcCCCCch----hhHH---hc-------C------cc--------ccccHHH-----------------------
Confidence 7666555554320 0100 00 0 00 0000000
Q ss_pred CCCcccccccchhHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhcccccccccchhHHHhhhccCcchhHHHHHHHHhh
Q psy4738 799 PPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSATSMGPAVGIILASYSGCNKVLAVMFFAIGM 878 (1188)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (1188)
.+++.+++++++...+..+......++...++|.|+++..|+|+.
T Consensus 244 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~-------------------------------- 288 (476)
T PLN00028 244 ---VLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLE-------------------------------- 288 (476)
T ss_pred ---HHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHH--------------------------------
Confidence 122334555555555555444445556677899999888888764
Q ss_pred cccccccCcccccccCCChhhHHHHHHHHhcccccccccccccccccccccccccccCCCCCCCcchhHHHHhhhhhhcc
Q psy4738 879 GFMGFYYPSIRINSLDLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHGKQARYHWTNRAPYSFNFPLFKYVLRKHADKYN 958 (1188)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 958 (1188)
T Consensus 289 -------------------------------------------------------------------------------- 288 (476)
T PLN00028 289 -------------------------------------------------------------------------------- 288 (476)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCchhhhcccchhhHHhhHhhcccchhhhhhcccchhhhccCccchhhHHHHHHHHhhhchhhHHHHhhccchh
Q psy4738 959 RFQDLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASNGLLSALPFLFMWIFSQGAGCLSDFIVERQWFSM 1038 (1188)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~~~~~~i~~~~~g~lsd~~~~r~~~~~ 1038 (1188)
+++.+.....++..++.+++|+++||+++|...
T Consensus 289 ---------------------------------------------~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~-- 321 (476)
T PLN00028 289 ---------------------------------------------TAGAIAASFGLMNLFARPAGGYLSDVAARRFGM-- 321 (476)
T ss_pred ---------------------------------------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCc--
Confidence 345556667788999999999999999877421
Q ss_pred HHHHHHHHHhhhhhhHHHHHhhhccCCchHHHHHHHHHHhhhhccccccccccccCCCCcchhHHHHHhhhhhhhhhhhh
Q psy4738 1039 TLTRKIFATAASMGPAVGIILASYSGCNKVLAVMFFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGLGAVSGIFS 1118 (1188)
Q Consensus 1039 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 1118 (1188)
+.|+........+.++.+....... +....+..+.+...+.+...........+..|+++|++.|+.+..+++|++++
T Consensus 322 -~~r~~~~~~~~~l~~i~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~ 399 (476)
T PLN00028 322 -RGRLWALWIVQTLGGVFCIWLGRAN-SLGAAIVVMILFSIFVQAACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLT 399 (476)
T ss_pred -chhHHHHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHhhhhhcccCcccChhhchhhhhhhhccccHHHHHH
Confidence 1144444444443333333333322 22222222222222222222233334456778899999999999999999888
Q ss_pred hhhheeecCCCccchhHHHHHHHHHHHHHhhhhhheeccCccc
Q psy4738 1119 APLIGIMTPNSTMSEWRLVFWLTFIILAVTNLFYLVFGSAEIQ 1161 (1188)
Q Consensus 1119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1161 (1188)
+.+.+ ..+..+|+.+|.+.+++.+++.++.++.+..+++
T Consensus 400 ~~l~~----~~~~~~y~~~f~~~~~~~~i~~~~~~~~~~~~~~ 438 (476)
T PLN00028 400 QLLFF----TGSSYSTETGISLMGVMIIACTLPVAFIHFPQWG 438 (476)
T ss_pred HHHHH----hcCCccHhhHHHHHHHHHHHHHHHHHheeccchh
Confidence 87654 2222458999999888888887777666544443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-27 Score=292.20 Aligned_cols=378 Identities=16% Similarity=0.206 Sum_probs=283.2
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHH
Q psy4738 5 CISQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFY 84 (1188)
Q Consensus 5 ~~~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~ 84 (1188)
+.+++|.++++++++++...++...++.++|.+. ++++++..+.+++.++++
T Consensus 161 ~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~----------------------------~~~gls~~~~g~l~s~~~ 212 (742)
T TIGR01299 161 HGRFQWALFFVLGLALMADGVEVFVVGFVLPSAE----------------------------KDLCIPDSGKGMLGLIVY 212 (742)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHhCCCHHHHHHHHHHHH
Confidence 4567788888889999999999999999999998 689999999999999999
Q ss_pred HHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchh
Q psy4738 85 WGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERG 164 (1188)
Q Consensus 85 lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg 164 (1188)
++++++++++|+++||+|||++++.+++++++++++++++ ++++.++++|+++|++.|+..|....++.|++|+++|+
T Consensus 213 lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa--~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg 290 (742)
T TIGR01299 213 LGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFV--QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRG 290 (742)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 9999999999999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccC-----------CCCChhHHHHHHHHHHHHHHHhhhcccCCCC---C-C---
Q psy4738 165 KIGSFVFAGNQIGTVFSSFLSGFLLKYTD-----------GDWPEIFYLFGILGVLWFVAWCFLCYNDPAS---H-P--- 226 (1188)
Q Consensus 165 ~~~gi~~~~~~lG~~ig~~lgg~l~~~~~-----------~gWr~~F~i~g~i~li~~il~~~~~~~~p~~---~-~--- 226 (1188)
+.++++.++..+|.++++.++..+....+ .+||+.|++.++.+++. ++..+++||+|+- + +
T Consensus 291 ~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~-ll~~~~lPESPrwL~~~gr~~e 369 (742)
T TIGR01299 291 EHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFA-IGALTFMPESPRFFLENGKHDE 369 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHCCCHHH
Confidence 99999999999999999998877765311 36899988877665544 4555667887641 0 0
Q ss_pred -----------CCC---HhHHH----HHH-------------H---------------------HHhh----h-------
Q psy4738 227 -----------YIS---QREKE----YLA-------------D---------------------TIGC----L------- 243 (1188)
Q Consensus 227 -----------~~~---~~~~~----~~~-------------~---------------------~~~~----~------- 243 (1188)
... ..++. .++ + .+.. .
T Consensus 370 A~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~ 449 (742)
T TIGR01299 370 AWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIK 449 (742)
T ss_pred HHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHH
Confidence 000 00000 000 0 0000 0
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHH----h-----------------CCCH----------------------------
Q psy4738 244 -ARNKIGHDWGLFMISADLPKYMKSV----M-----------------KFSI---------------------------- 273 (1188)
Q Consensus 244 -~~~~~~~~~~~~~~~~~lp~yl~~~----~-----------------g~s~---------------------------- 273 (1188)
....++..+++|++..|+|.++++. + +++.
T Consensus 450 l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (742)
T TIGR01299 450 LMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDS 529 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccc
Confidence 0056677778999999999887552 0 0000
Q ss_pred -----------------------------------------------------------------HHHHHHHHHHHHHHH
Q psy4738 274 -----------------------------------------------------------------AKNGVLSSLPFLLMW 288 (1188)
Q Consensus 274 -----------------------------------------------------------------~~~g~l~~~~~l~~~ 288 (1188)
........+..++.+
T Consensus 530 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i 609 (742)
T TIGR01299 530 LFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVL 609 (742)
T ss_pred cccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHH
Confidence 012333556678889
Q ss_pred HHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCc
Q psy4738 289 LTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSP 368 (1188)
Q Consensus 289 ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 368 (1188)
++.++.|+++||+||| ....++.+..+++.+......+.....+..+ +..++.+...+.....+.++.|
T Consensus 610 ~G~il~g~L~Dr~GRr----------~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~-l~g~~~~~~~~~~~a~~aEl~P 678 (742)
T TIGR01299 610 PGNIVSALLMDKIGRL----------RMLAGSMVLSCISCFFLSFGNSESAMIALLC-LFGGLSIAAWNALDVLTVELYP 678 (742)
T ss_pred HHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999964 3345556666666555555544333333333 3333444455666677777766
Q ss_pred -hhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCccchHHHHHHHHHHHHHHHHHhhhhh
Q psy4738 369 -NYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSDYLVS 427 (1188)
Q Consensus 369 -~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (1188)
+.||+++|+.+...++|++++|++++.+.+.. ...++++.+++.++++++..++++
T Consensus 679 t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~---~~~pf~i~a~~lll~~ll~~~LPE 735 (742)
T TIGR01299 679 SDKRATAFGFLNALCKAAAVLGILIFGSFVGIT---KAAPILFASAALACGGLLALKLPD 735 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHhCCC
Confidence 78999999999999999999999999887653 356677777776776666666543
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=288.53 Aligned_cols=384 Identities=22% Similarity=0.336 Sum_probs=276.2
Q ss_pred CCCCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHH
Q psy4738 561 PRHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVW 640 (1188)
Q Consensus 561 ~~~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~ 640 (1188)
.......|.+++++|.++.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++++++ +.+.+++.
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 88 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG--AYVSLYIL 88 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc--CHHHHHHH
Confidence 3344556788999999999999999999999999999999999999999999999999999999999998 66779999
Q ss_pred HHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHH
Q psy4738 641 RFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWL 720 (1188)
Q Consensus 641 R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~ 720 (1188)
|+++|++.+...|....++.|++|+++|++..++.+....+|..++|.+++.+.+..+ ||+.|++.+++.++..+...
T Consensus 89 ~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~ 166 (399)
T TIGR00893 89 RVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS--WQWAFIIEGVLGIIWGVLWL 166 (399)
T ss_pred HHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999998888 99999999998888777777
Q ss_pred hhccCCCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeecCC
Q psy4738 721 FIGYSEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPP 800 (1188)
Q Consensus 721 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1188)
+..||+|+++++.++++++...+.... +.++ ++..+..+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~--~~~~~~~~~----------------------------- 206 (399)
T TIGR00893 167 KFIPDPPQKAKWLTEEEKYIVVGGLLA---------EQQG--KGPSTPKKY----------------------------- 206 (399)
T ss_pred heecCCCCccccCCHHHHhhcchhhcc---------cccc--ccccCCCcc-----------------------------
Confidence 777777766654433332211111000 0000 000000111
Q ss_pred CcccccccchhHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhcccccccccchhHHHhhhccCcchhHHHHHHHHhhcc
Q psy4738 801 TPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSATSMGPAVGIILASYSGCNKVLAVMFFAIGMGF 880 (1188)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (1188)
..++.+++++++...+..+...........+.|.|+++..|+|..
T Consensus 207 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 251 (399)
T TIGR00893 207 -QIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSIL---------------------------------- 251 (399)
T ss_pred -chHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHH----------------------------------
Confidence 123455667777777777777778888888999999988887754
Q ss_pred cccccCcccccccCCChhhHHHHHHHHhcccccccccccccccccccccccccccCCCCCCCcchhHHHHhhhhhhcccC
Q psy4738 881 MGFYYPSIRINSLDLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHGKQARYHWTNRAPYSFNFPLFKYVLRKHADKYNRF 960 (1188)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 960 (1188)
T Consensus 252 -------------------------------------------------------------------------------- 251 (399)
T TIGR00893 252 -------------------------------------------------------------------------------- 251 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCchhhhcccchhhHHhhHhhcccchhhhhhcccchhhhccCccchhhHHHHHHHHhhhchhhHHHHhhccchhHH
Q psy4738 961 QDLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASNGLLSALPFLFMWIFSQGAGCLSDFIVERQWFSMTL 1040 (1188)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~~~~~~i~~~~~g~lsd~~~~r~~~~~~~ 1040 (1188)
+.+.+.....+...++.++.|+++||+++|+. ....
T Consensus 252 -------------------------------------------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~ 287 (399)
T TIGR00893 252 -------------------------------------------EAGFMASLPGIVGFIGMILGGRLSDLLLRRGK-SLVF 287 (399)
T ss_pred -------------------------------------------HhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-chhH
Confidence 34455566668888999999999999977741 0000
Q ss_pred HHHHHHHhhhhhhHHHHHhhhccCCchHHHHHHHHHHhhhhccccccccccccC-CCCcchhHHHHHhhhhhhhhhhhhh
Q psy4738 1041 TRKIFATAASMGPAVGIILASYSGCNKVLAVMFFAIGMGFMGFYYPSIRINSLD-LSPNYAATLMAIVNGLGAVSGIFSA 1119 (1188)
Q Consensus 1041 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~ 1119 (1188)
.......+............. ..+.........++.+..+ ..+.......| .++++|+++.|+.+...++|+.++|
T Consensus 288 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~ 364 (399)
T TIGR00893 288 -ARKTAIIAGLVLSLLMFATNY-VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGP 364 (399)
T ss_pred -HHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhh
Confidence 011111111111111111111 1123333333333333333 33444444445 4566799999999999999999999
Q ss_pred hhheeecCCCccchhHHHHHHHHHHHHHhhhhh
Q psy4738 1120 PLIGIMTPNSTMSEWRLVFWLTFIILAVTNLFY 1152 (1188)
Q Consensus 1120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1152 (1188)
.+.|.+.+..+ .|+..|.+.+...+++.+..
T Consensus 365 ~i~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 365 IVIGAIAATTG--SFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHhhhhccCCC--chhHHHHHHHHHHHHHHHHH
Confidence 99999988642 37788887777766665544
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-27 Score=284.16 Aligned_cols=355 Identities=17% Similarity=0.139 Sum_probs=264.2
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHH
Q psy4738 7 SQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWG 86 (1188)
Q Consensus 7 ~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg 86 (1188)
.++|.+...+++.....+.++..++...|.+. +++|+|.++.+++.+.+.++
T Consensus 15 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~----------------------------~~~g~s~~~~~~~~s~~~~~ 66 (455)
T TIGR00892 15 GWGWVVLGATFVSIGFSYAFPKAVTVFFKELQ----------------------------QIFQATYSETAWISSIMLAV 66 (455)
T ss_pred CcchHHHHHHHHHHHHHHhhhcchhhhHHHHH----------------------------HHhCcchhHHHHHHHHHHHH
Confidence 56788888888888888999999999999999 79999999999999999999
Q ss_pred HHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHH-HHHHHHhhhccchhHHHHHHhhccCCCchhh
Q psy4738 87 YVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIA-LRFFEGLGEGTTFPALNTLLAQWVPPTERGK 165 (1188)
Q Consensus 87 ~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli-~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~ 165 (1188)
+.++.++.|+++||+|||++++.+.+++++++++++++ ++++.+++ .|+++|++.+...+...+++.+|+| ++|++
T Consensus 67 ~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~ 143 (455)
T TIGR00892 67 LYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFS--SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPL 143 (455)
T ss_pred HHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHH
Confidence 99999999999999999999999999999999999998 89998865 5799999999877888899999996 79999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCC--C---------CCCHhH--
Q psy4738 166 IGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASH--P---------YISQRE-- 232 (1188)
Q Consensus 166 ~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~--~---------~~~~~~-- 232 (1188)
++++...+..+|..++|++++.+.+. .|||++|++.+++.++..+.+++..++.++++ + ....++
T Consensus 144 a~g~~~~~~~~g~~~~~~l~~~l~~~--~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (455)
T TIGR00892 144 ANGLAMAGSPVFLSTLAPLNQYLFES--FGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLS 221 (455)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCcccccc
Confidence 99999999999999999999999998 89999999999988776665555544322110 0 000000
Q ss_pred ----HHHHH-----HHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 233 ----KEYLA-----DTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFS 298 (1188)
Q Consensus 233 ----~~~~~-----~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~ls 298 (1188)
.++.. +.++.... ..+....+.+....++|.|+++ .|++..+.+...++..++..+++++.++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~ 300 (455)
T TIGR00892 222 KKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIA 300 (455)
T ss_pred ccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00010 01111100 2233344556667889999987 799999999999999999999999999999
Q ss_pred HHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcc-cCchhhHHHHHH
Q psy4738 299 DYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALD-LSPNYAGTLMAI 377 (1188)
Q Consensus 299 dr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~g~~~g~ 377 (1188)
||...|+. |+.....+.+..+.+++...... +.+.......+.+...+...+.......+ .+++++|++.|+
T Consensus 301 d~~~~~~~------~~~~~~~~~~~~~l~~ll~~~~~-~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~ 373 (455)
T TIGR00892 301 GLKWIRPH------VQYLFSFALLFNGLTHLLCALAG-DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGL 373 (455)
T ss_pred cccccCHH------HHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhH
Confidence 97432211 22223333333333333333332 33332222223333344444444444444 456789999999
Q ss_pred HHHHHhhhhhhhhHHHHhhccCCCc
Q psy4738 378 VNGIGAISGIISPYLIGILVPNNGV 402 (1188)
Q Consensus 378 ~~~~~~lgg~i~p~l~g~l~~~~G~ 402 (1188)
.+...++|++++|.+.|.+.|..|.
T Consensus 374 ~~~~~~lg~~igp~i~G~l~~~~g~ 398 (455)
T TIGR00892 374 VTIVECCAVLIGPPLAGRLVDATKN 398 (455)
T ss_pred HHHHHHHHHHccccceeeeehhcCC
Confidence 9999999999999999999998864
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-26 Score=272.02 Aligned_cols=342 Identities=17% Similarity=0.200 Sum_probs=258.0
Q ss_pred HHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhHhhHH
Q psy4738 16 GFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGG 95 (1188)
Q Consensus 16 l~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~~~~G 95 (1188)
+.+..+........+.+.+|.+. +|+|.|+++.+++.+.+.+++.++++++|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~p~~~----------------------------~~~g~s~~~~g~~~~~~~~~~~~~~~~~g 61 (385)
T TIGR00710 10 LGCLSILGPLGIDMYLPAFPEIA----------------------------ADLSTPASIVQMTLTLYLLGFAAGQLLWG 61 (385)
T ss_pred HHHHHHHHHHHHHHhcccHHHHH----------------------------HHhCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33334556677778888889888 78999999999999999999999999999
Q ss_pred HhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHHHHHHH
Q psy4738 96 LLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQ 175 (1188)
Q Consensus 96 ~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~~~~~ 175 (1188)
+++||+|||+++..+.++.+++.++++++ ++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....
T Consensus 62 ~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (385)
T TIGR00710 62 PLSDRYGRRPVLLLGLFIFALSSLGLALS--NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLA 139 (385)
T ss_pred hHHHhcCChHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHhH-HHHHHHHHhhhhh-----hHHH
Q psy4738 176 IGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQRE-KEYLADTIGCLAR-----NKIG 249 (1188)
Q Consensus 176 lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~ 249 (1188)
+|..+++.+++.+.+. .|||+.|++.+++.++..+..++..||++++++..++++ .+...+..+++.. ....
T Consensus 140 ~g~~~g~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (385)
T TIGR00710 140 LAPAVAPLLGGYILVW--LSWHAIFAFLSLAGILLSALIFFILPETLPYEARIQISTYFETFLLLLKSKMFWGYALIYGA 217 (385)
T ss_pred HHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCCHHHHHHHHHHHHcCchhHHHHHHHHH
Confidence 9999999999999998 899999999988888777766666666544332221111 1222222222111 2223
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHH
Q psy4738 250 HDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVI 329 (1188)
Q Consensus 250 ~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~ 329 (1188)
.....+....+.|.|+++.+|++..+.+.+.....++..++.++.+++.||+++|+. ...+........+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~----------~~~~~~~~~~~~~ 287 (385)
T TIGR00710 218 SFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSL----------LRMGLILFAVSAV 287 (385)
T ss_pred HHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH----------HHHHHHHHHHHHH
Confidence 334456677788999998899999999999999999999999999999999986532 1122222222221
Q ss_pred HHHh---hc-chHHHHHHHHHHHHHHHhhhhhHHHHhhcccCchhhHHHHHHHHHHHhhhhhhhhHHHHhhccC
Q psy4738 330 LASY---AG-CDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPN 399 (1188)
Q Consensus 330 ~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~ 399 (1188)
.... .. ...........+...+.+...+.......|..|+++|++.++.+...+.++.+.+.+.+.+.+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~ 361 (385)
T TIGR00710 288 LLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVSLIHGN 361 (385)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1111 11 1122222223333344455555566666677788899999999999988777777777754443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=280.09 Aligned_cols=379 Identities=20% Similarity=0.248 Sum_probs=267.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHH
Q psy4738 8 QRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGY 87 (1188)
Q Consensus 8 ~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~ 87 (1188)
.|+.....+++.+...+.++.++....|.+. |+|.|+++.+++.+++.+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-----------------------------~~g~s~~~~g~~~~~~~~~~ 74 (438)
T TIGR00712 24 LRWQVFLGIFFGYAAYYLVRKNFALAMPYLV-----------------------------EQGFSKGELGFALSAISIAY 74 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHhhhHHHH-----------------------------HcCCCHhHhHHHHHHHHHHH
Confidence 3566677778889999999999999999887 35899999999999999999
Q ss_pred HHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhh--hccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhh
Q psy4738 88 VIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA--RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGK 165 (1188)
Q Consensus 88 ~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~--~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~ 165 (1188)
.+++++.|+++||+|||+++..+.++.++++++.++.. .++++.+.+.|++.|+++|..++.....+.|++|++||++
T Consensus 75 ~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~ 154 (438)
T TIGR00712 75 GFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGT 154 (438)
T ss_pred HHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchh
Confidence 99999999999999999999999999999988877641 1467788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-ccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCC-------------H-
Q psy4738 166 IGSFVFAGNQIGTVFSSFLSGFLLK-YTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYIS-------------Q- 230 (1188)
Q Consensus 166 ~~gi~~~~~~lG~~ig~~lgg~l~~-~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~-------------~- 230 (1188)
++++.+++..+|..+++++.+...+ . .|||+.|++.++++++..+.++++.+|+|++++..+ +
T Consensus 155 ~~~~~~~~~~~g~~~~~~l~~~~~~~~--~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (438)
T TIGR00712 155 IVSIWNCAHNIGGGIPPLLVLLGMAWF--NDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEK 232 (438)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccc
Confidence 9999999999999999988776544 4 689999999999988877777777777664321000 0
Q ss_pred hHHH-HHHH----HHhhhhh------hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 231 REKE-YLAD----TIGCLAR------NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSD 299 (1188)
Q Consensus 231 ~~~~-~~~~----~~~~~~~------~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsd 299 (1188)
++++ ...+ ...+... ..++.....+++..++|.|+++..|++..++++...+..+...++.++.|+++|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~d 312 (438)
T TIGR00712 233 AEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD 312 (438)
T ss_pred cccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0000 0111111 223334456788899999999999999999999999999999999999999999
Q ss_pred HHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhc-chHHH-HHHHHHHHHHHHhhhhhHHHHhhccc-CchhhHHHHH
Q psy4738 300 YLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAG-CDQIL-VVTLFTVGMAFMGFFYPSLKVNALDL-SPNYAGTLMA 376 (1188)
Q Consensus 300 r~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~~~g 376 (1188)
|+++++. .............+++...... .+... ....+.++....+.. ........+. +++.||+++|
T Consensus 313 r~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g 384 (438)
T TIGR00712 313 KVFKGNR-------GATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPV-MLIGLHALELAPKKAAGTAAG 384 (438)
T ss_pred HhccCcc-------cHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHH-HHHHHHHHHhcChhheeeehh
Confidence 9975432 1111111111111122111111 12222 122222222211111 1112233444 4578999999
Q ss_pred HHHHHHhhhh-hhhhHHHHhhccCCCccchHHHHHHHHHHHHHHHHHhhhhh
Q psy4738 377 IVNGIGAISG-IISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSDYLVS 427 (1188)
Q Consensus 377 ~~~~~~~lgg-~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (1188)
+.+...++++ +++|.+.|.+.|..|+ ...+.......+++.+......+
T Consensus 385 ~~~~~~~~gg~~~gp~l~G~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~ 434 (438)
T TIGR00712 385 FTGLFGYLGGSVAASAIVGYTVDFFGW--DGGFMVMIGGSILAVILLIVVMI 434 (438)
T ss_pred hhchHHHhhhhhhcchhHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999886 5899999999998873 33444444444444444444433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-27 Score=272.91 Aligned_cols=335 Identities=28% Similarity=0.451 Sum_probs=255.8
Q ss_pred HHHHHHHHHhhhhhHhhHHh-hhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhHhhH
Q psy4738 16 GFLAVANAYAMRGCLSLAIT-EMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHIPG 94 (1188)
Q Consensus 16 l~l~~~~~~~~~~~~s~ai~-~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~~~~ 94 (1188)
++++.++..++...+++.+| .+. +++|+|+.+.+++.+++.+++.+++++.
T Consensus 1 L~l~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 52 (352)
T PF07690_consen 1 LFLAFFLSGFGFSIISPALPLYLA----------------------------EELGLSPSQIGLLFSAFFLGSALFSPFA 52 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHH----------------------------CCSTTTSHCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH----------------------------HccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999 787 7899999999999999999999999999
Q ss_pred HHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHHHHHH
Q psy4738 95 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGN 174 (1188)
Q Consensus 95 G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~~~~ 174 (1188)
|+++||+|||+++..+.++.+++.++..++ +|.+.+++.|+++|++.+...|...+++.|++|+|||++++++...+.
T Consensus 53 g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 130 (352)
T PF07690_consen 53 GYLSDRFGRRRVLIIGLLLFALGSLLLAFA--SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGF 130 (352)
T ss_dssp HHHHHHS-HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCeeeEeehhhhhhhHHHHhhhh--hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchh
Confidence 999999999999999999999997777777 788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHhHH-----HHH----HHHHhhh--
Q psy4738 175 QIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREK-----EYL----ADTIGCL-- 243 (1188)
Q Consensus 175 ~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~~~-----~~~----~~~~~~~-- 243 (1188)
.+|.+++|++++.+.+. .|||+.|++.+++.++..++..++.+++|++++..+++++ +.. +...+..
T Consensus 131 ~~g~~~g~~l~~~l~~~--~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (352)
T PF07690_consen 131 SLGSILGPLLGGFLISY--FGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVL 208 (352)
T ss_dssp HHHHHHHHHHHHHCCCH--CHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCC
T ss_pred hhhhhcccchhhhhhhc--cccccccccccchhhhhhhhHhhhhhhcccccccccccccccccccccccccccccccchh
Confidence 99999999999999988 8999999999999998877655555554443332222111 110 1111111
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHH
Q psy4738 244 ---ARNKIGHDWGLFMISADLPKYMKSVMKFS-IAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTI 319 (1188)
Q Consensus 244 ---~~~~~~~~~~~~~~~~~lp~yl~~~~g~s-~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i 319 (1188)
....+...........++|.|+++.+|++ ..+.+.......+...++.++.+++.||+++|+ +......
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~ 281 (352)
T PF07690_consen 209 WILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR-------RLLIAIL 281 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH-------HHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-------HHHHHHH
Confidence 11233334466778899999988999999 899999999999999999999999999988642 1111222
Q ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCc-hhhHHHHHHHHHHHhhhhhhhh
Q psy4738 320 ASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGTLMAIVNGIGAISGIISP 390 (1188)
Q Consensus 320 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~lgg~i~p 390 (1188)
........+......++..+.....+..+. +.+...+.......+..| +++|++.|+.+...++++.++|
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 282 LLILGALGLLLLPFSSSPVWLIIALFLIGF-GFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHCCSHHHCHHHHHHHHHHHHHH-HHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 222222222222222222333333344444 566666666666666655 8999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-27 Score=284.92 Aligned_cols=346 Identities=18% Similarity=0.224 Sum_probs=271.6
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhH
Q psy4738 12 LGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMH 91 (1188)
Q Consensus 12 i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~ 91 (1188)
+...++++.++..+|....++++|.+. +++|.|..+.+++.+.|.+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~----------------------------~~~g~s~~~~~~~~~~~~~~~~~~~ 54 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIA----------------------------GDLGSSLSQVQWVITSYMLANAISI 54 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HhcCCChhhhhHHHHHHHHHHHHHH
Confidence 455677889999999999999999999 7899999999999999999999999
Q ss_pred hhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHHH
Q psy4738 92 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF 171 (1188)
Q Consensus 92 ~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~ 171 (1188)
++.|+++||+|||+++..+.+++++++++++++ +|++.+++.|+++|++.+...|...+++.|++|+++|+++++++.
T Consensus 55 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 132 (485)
T TIGR00711 55 PLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA--PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWG 132 (485)
T ss_pred HhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCC-CCHhH------------------
Q psy4738 172 AGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPY-ISQRE------------------ 232 (1188)
Q Consensus 172 ~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~-~~~~~------------------ 232 (1188)
.+..+|..++|.+++++.++ .|||+.|++.++++++..++..+..|+++++++. .+..+
T Consensus 133 ~~~~~g~~~g~~~~~~l~~~--~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~ 210 (485)
T TIGR00711 133 LTVLVAPALGPTLGGWIIEN--YHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEG 210 (485)
T ss_pred HHHHHHhhhhhccHhHhccC--cCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999998 8999999999988887776666666654332211 11000
Q ss_pred -H-----H-HH----------------H-----------HHHhhhh-----hhHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy4738 233 -K-----E-YL----------------A-----------DTIGCLA-----RNKIGHDWGLFMISADLPKYMKSVMKFSI 273 (1188)
Q Consensus 233 -~-----~-~~----------------~-----------~~~~~~~-----~~~~~~~~~~~~~~~~lp~yl~~~~g~s~ 273 (1188)
+ . .. . +.++... ...+......+....++|.|+++.+|++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~ 290 (485)
T TIGR00711 211 PERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTA 290 (485)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 0 0 00 0 0000000 03344455667778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHh-h--cchHHHHHHHHHHHHH
Q psy4738 274 AKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASY-A--GCDQILVVTLFTVGMA 350 (1188)
Q Consensus 274 ~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~-~--~~~~~~~~~~~~~~~~ 350 (1188)
.+.+....+..++..++.++.|++.||+++|+ ...++....+.+...... . ..+.........+...
T Consensus 291 ~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 360 (485)
T TIGR00711 291 LQAGLHILPVGLAPMLSSPIAGRMGDKIDPRK----------LVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGF 360 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHH----------HHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998642 233444444444443331 1 1222322222333333
Q ss_pred HHhhh-hhHHHHhhcccCchhhHHHHHHHHHHHhhhhhhhhHHHHhhccC
Q psy4738 351 FMGFF-YPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPN 399 (1188)
Q Consensus 351 ~~~~~-~~~~~~~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~ 399 (1188)
+.+.. .+.......+.+++++|++.|+.+..+++|+.+++.+.+.+.++
T Consensus 361 g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 361 GMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 34445555667779999999999999999999999999988765
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-26 Score=272.93 Aligned_cols=373 Identities=16% Similarity=0.114 Sum_probs=259.6
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhH
Q psy4738 12 LGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMH 91 (1188)
Q Consensus 12 i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~ 91 (1188)
-+..+.++.++..+......+.+|...+ +++|+|+.+.|++.+++.+++.+++
T Consensus 16 ~~~~l~~~~~~~~~~~~~~~~~l~~~i~---------------------------~~~g~s~~~~g~~~~~~~~~~~i~~ 68 (399)
T PRK05122 16 RIVSIVMFTFISYLTIGLPLAVLPGYVH---------------------------DQLGFSAFLAGLVISLQYLATLLSR 68 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HhcCccHHHHHHHHHHHHHHHHHhc
Confidence 3445677778888888888888887432 6899999999999999999999999
Q ss_pred hhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhh------ccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhh
Q psy4738 92 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR------QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGK 165 (1188)
Q Consensus 92 ~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~------~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~ 165 (1188)
++.|+++||+|||+++..+.++++++++.+.++.. .+++.+++.|+++|++.+...|...+++.|++|+|||++
T Consensus 69 ~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~ 148 (399)
T PRK05122 69 PHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGR 148 (399)
T ss_pred hhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhcc
Confidence 99999999999999999999999888777665421 256789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCH-hHHHHHHHHHhhhh
Q psy4738 166 IGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQ-REKEYLADTIGCLA 244 (1188)
Q Consensus 166 ~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~ 244 (1188)
++++...+..+|.++|+++++.+.+. .|||+.|++..++.++..+.. ++.|++++..++ ++.+...+......
T Consensus 149 ~~~~~~~~~~~g~~~g~~l~~~l~~~--~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (399)
T PRK05122 149 VISWNGIATYGALAIGAPLGVLLYHW--GGLAGLGLLIMLLALLGLLLA----RPRPAVPPVKGERLPFRRVLGRVWPYG 222 (399)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHHH----hcCCCCCCCCccchhHHHHHHHHHHHH
Confidence 99999999999999999999999998 899999987766554433222 222222111111 11111111111111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Q psy4738 245 RNKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGP 324 (1188)
Q Consensus 245 ~~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~ 324 (1188)
.........+.....++|.|+++ .++ .+.+.......++..++.+..+++.||+++|+ ....+....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~----------~~~~~~~~~ 289 (399)
T PRK05122 223 MGLALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLR----------VAIVSLLVE 289 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHH----------HHHHHHHHH
Confidence 12233445566677888988876 455 34566667778888899999999999998642 222333333
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHH-hhcccCchhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCcc
Q psy4738 325 ASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKV-NALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVL 403 (1188)
Q Consensus 325 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~ 403 (1188)
+.+++.....++ .........+...+.+...+.... ...+.++++||++.|+.+...++|+.++|.+.|.+.|..|
T Consensus 290 ~~~~~~~~~~~~-~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-- 366 (399)
T PRK05122 290 ILGLLLLWLAPS-PWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-- 366 (399)
T ss_pred HHHHHHHHHhcc-HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--
Confidence 334433333333 222222223333333334444333 3344566899999999999999999999999999999877
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhcccchh
Q psy4738 404 SSLPFLLMWLTAIVAGWFSDYLVSKNIFSV 433 (1188)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (1188)
+...+...+++.+++.+.....+++++++.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T PRK05122 367 YPSIFLAAALAALLGLALTWLLYRRAPRAV 396 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence 344555555555555555555555544443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=279.50 Aligned_cols=346 Identities=21% Similarity=0.244 Sum_probs=260.5
Q ss_pred HHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhHhhHHHh
Q psy4738 18 LAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLL 97 (1188)
Q Consensus 18 l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~L 97 (1188)
++++..+.+|..++++.|.+. +++|+|.++.+++.+++.+++.+++++.|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~----------------------------~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l 53 (379)
T TIGR00881 2 IGYAAYYLVRKNFALAMPYLV----------------------------EEIGLSKTDLGLLLSSFSIAYGISKFVMGSV 53 (379)
T ss_pred chhhHHHHhHHhhhhhhHHHH----------------------------HHhCCCHhHHHHHHHHHHHHHHhhhhhhhHH
Confidence 467899999999999999998 6899999999999999999999999999999
Q ss_pred hcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHHHHHHHHH
Q psy4738 98 AQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIG 177 (1188)
Q Consensus 98 aDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG 177 (1188)
+||+|||+++..+.++.+++.++++++ ++++.+++.|+++|++.+...|...+++.|++|++||++++++...+..+|
T Consensus 54 ~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 131 (379)
T TIGR00881 54 SDRSNPRVFLPIGLILCAIVNLFFGFS--TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVG 131 (379)
T ss_pred HHhhCCeehhHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhH
Confidence 999999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCC-------H---------hHHHH----H
Q psy4738 178 TVFSS-FLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYIS-------Q---------REKEY----L 236 (1188)
Q Consensus 178 ~~ig~-~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~-------~---------~~~~~----~ 236 (1188)
..+++ .+++.+.+. .|||+.|++.+.+.++..++.+++.+|+|++++..+ + ++++. .
T Consensus 132 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (379)
T TIGR00881 132 GGLLPPLVLFGIAEL--YSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFL 209 (379)
T ss_pred HHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHH
Confidence 99999 477777777 799999999998888877777777776554321100 0 00000 0
Q ss_pred HHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhH
Q psy4738 237 ADTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTV 311 (1188)
Q Consensus 237 ~~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~ 311 (1188)
.+..+.... ..+...........+.|.|+++.+|++..+.+.......++..++.++.+++.||..+|+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~----- 284 (379)
T TIGR00881 210 QYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRR----- 284 (379)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcc-----
Confidence 011111110 2333444566778899999999999999999999999999999999999999999755432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-cchH-HHHHHHHHHHHHHHhhhhhHHHHhhcc-cCchhhHHHHHHHHHHHhhhhhh
Q psy4738 312 IRKIFTTIASVGPASGVILASYA-GCDQ-ILVVTLFTVGMAFMGFFYPSLKVNALD-LSPNYAGTLMAIVNGIGAISGII 388 (1188)
Q Consensus 312 ~r~~~~~i~~~~~~~~l~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~g~~~g~~~~~~~lgg~i 388 (1188)
.............++...... ..+. ......+..+....+. .+.......+ .+++.||++.|+.+...++++.+
T Consensus 285 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~ 361 (379)
T TIGR00881 285 --GPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGP-QMLIGVIASELAPKKAAGTAAGFVGFFAYLGGIL 361 (379)
T ss_pred --hHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhh-hHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhh
Confidence 111111111112222222221 1122 2222222223222222 2222333444 45588999999999999999999
Q ss_pred hhHHHHhhccCCCcc
Q psy4738 389 SPYLIGILVPNNGVL 403 (1188)
Q Consensus 389 ~p~l~g~l~~~~G~~ 403 (1188)
+|.+.|.+.|..|+.
T Consensus 362 ~~~~~g~l~~~~g~~ 376 (379)
T TIGR00881 362 AGLPLGYLADGFGWA 376 (379)
T ss_pred hhhhHHHHHHhhccc
Confidence 999999999988753
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-26 Score=280.17 Aligned_cols=399 Identities=15% Similarity=0.150 Sum_probs=265.3
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHH
Q psy4738 6 ISQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYW 85 (1188)
Q Consensus 6 ~~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~l 85 (1188)
.+..+.+..+..++.+...+|...++...|.+.++- .+...+++++++.+.+++.+++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~s~~~i 66 (479)
T PRK10077 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVF--------------------VAPQNLSESAANSLLGFCVASALI 66 (479)
T ss_pred chHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHh--------------------cccccccccCChhHHHHHHHHHHH
Confidence 344566777777889999999999999999987311 112235679999999999999999
Q ss_pred HHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhh----------hccHHHHHHHHHHHHhhhccchhHHHHHHh
Q psy4738 86 GYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA----------RQSANWLIALRFFEGLGEGTTFPALNTLLA 155 (1188)
Q Consensus 86 g~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~----------~~s~~~lli~R~l~Glg~g~~~p~~~~li~ 155 (1188)
++.++++++|+++||+|||+++..+.+++++++++++++. .++++.+++.|+++|++.|...|...++++
T Consensus 67 g~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~ 146 (479)
T PRK10077 67 GCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIA 146 (479)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHH
Confidence 9999999999999999999999999999999998887631 123567899999999999999999999999
Q ss_pred hccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhc------cCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCC-
Q psy4738 156 QWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY------TDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYI- 228 (1188)
Q Consensus 156 ~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~------~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~- 228 (1188)
||+|++||++++++.+.+..+|.++++.+++.+.+. ...|||++|++.++..++..+. .+++||+|+.....
T Consensus 147 e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~~l~~~~ 225 (479)
T PRK10077 147 EIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETPRYLMSRG 225 (479)
T ss_pred hhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCcHHHHHcC
Confidence 999999999999999999999999998887765421 1269999999988887776544 45567776421000
Q ss_pred CHhH-----------------HHHHHHHHhhhh----h------h---------HHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy4738 229 SQRE-----------------KEYLADTIGCLA----R------N---------KIGHDWGLFMISADLPKYMKSVMKFS 272 (1188)
Q Consensus 229 ~~~~-----------------~~~~~~~~~~~~----~------~---------~~~~~~~~~~~~~~lp~yl~~~~g~s 272 (1188)
++++ .++..+...... . . .+....+++...++.|.++++ .|++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~ 304 (479)
T PRK10077 226 KQEQAEGILRKIMGNTLATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGAS 304 (479)
T ss_pred CHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCC
Confidence 0000 001111111000 0 0 000111122334566776655 7888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhh--cch-HHHHH-HHHHHH
Q psy4738 273 IAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYA--GCD-QILVV-TLFTVG 348 (1188)
Q Consensus 273 ~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~--~~~-~~~~~-~~~~~~ 348 (1188)
............+...++.++.++++||+++|+. ...+....+++.+.+... ... ..... .+...+
T Consensus 305 ~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~----------~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~ 374 (479)
T PRK10077 305 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL----------QIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV 374 (479)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH----------HHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 7777777778888999999999999999996532 233333333333332221 111 11221 122222
Q ss_pred HHHHhhhhhHHHHhhcccCc-hhhHHHHHHHHHHHhhhhhhhhHHHHhhc------cCCCccchHHHHHHHHHHHHHHHH
Q psy4738 349 MAFMGFFYPSLKVNALDLSP-NYAGTLMAIVNGIGAISGIISPYLIGILV------PNNGVLSSLPFLLMWLTAIVAGWF 421 (1188)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~lgg~i~p~l~g~l~------~~~G~~~~~~~~~~~~~~~~~~~~ 421 (1188)
.+......+.......+..| +.|++++|+.+..+++++++++.+.+.+. |..+. ...+...++.++++.+.
T Consensus 375 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 452 (479)
T PRK10077 375 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHN--GFSYWIYGCMGVLAALF 452 (479)
T ss_pred HHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccC--ccHHHHHHHHHHHHHHH
Confidence 22222223555566666655 78999999999999999999987776554 34443 33444444444444444
Q ss_pred Hhh-hhhcccchhhhhhH
Q psy4738 422 SDY-LVSKNIFSVTVIRK 438 (1188)
Q Consensus 422 ~~~-~~~~~~~~~~~~~k 438 (1188)
... .++.+++..++..+
T Consensus 453 ~~~~~~e~~~~~~~~~~~ 470 (479)
T PRK10077 453 MWKFVPETKGKTLEEMEA 470 (479)
T ss_pred HHhccccCCCCCHHHHHH
Confidence 333 33334444444443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-26 Score=266.00 Aligned_cols=344 Identities=13% Similarity=0.027 Sum_probs=258.3
Q ss_pred HHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhHhhHH
Q psy4738 16 GFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGG 95 (1188)
Q Consensus 16 l~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~~~~G 95 (1188)
+..+.++..+......+.+|... .|++.++.+.+++.+.+.+++.+++++.|
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~s~~~~g~~~~~~~~~~~i~~~~~G 55 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYV----------------------------LAGTGSASVLSLAALAGMLPYVVLSPIAG 55 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH----------------------------HHhhccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44566777777888888888887 67889999999999999999999999999
Q ss_pred HhhcccCchHHHHHHHHHHHHHHHHHHHhhhc-----cHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHH
Q psy4738 96 LLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ-----SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 170 (1188)
Q Consensus 96 ~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~-----s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~ 170 (1188)
+++||+|||+++..+.++.+++.++.+++ + +++.+++.|+++|++.+...|...+++.|++|++||++++++.
T Consensus 56 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (365)
T TIGR00900 56 ALADRYDRKKVMIGADLIRAVLVAVLPFV--ALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLS 133 (365)
T ss_pred HHHHhhchhHHHHHHHHHHHHHHHHHHHH--HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHH
Confidence 99999999999999999999999988888 6 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhc-ccCCCCCCC-CCHhHHHHHHHH----Hhhhh
Q psy4738 171 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLC-YNDPASHPY-ISQREKEYLADT----IGCLA 244 (1188)
Q Consensus 171 ~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~-~~~p~~~~~-~~~~~~~~~~~~----~~~~~ 244 (1188)
+.+..+|.+++|++++.+.+. .|||+.|++.++..++..+..+.+. |+++++++. .+++..++..+. .+++.
T Consensus 134 ~~~~~~g~~~g~~l~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (365)
T TIGR00900 134 QAVRSLFYIVGPGIGGLMYAT--LGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKNPL 211 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhHHHHHHhHHHHHHcCcH
Confidence 999999999999999999998 8999999998776665544444332 222221111 111111111111 11111
Q ss_pred h-----hHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHH
Q psy4738 245 R-----NKIGHDWGLFMIS-ADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTT 318 (1188)
Q Consensus 245 ~-----~~~~~~~~~~~~~-~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~ 318 (1188)
. ..+.......... .+.|.|.++.+|.+..+.+.......++..++.++.+++.||.++|+ ...
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~ 281 (365)
T TIGR00900 212 LRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMA----------LMT 281 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH----------HHH
Confidence 1 2222333344444 78899999889999999999999999999999999999999988542 233
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhccc-CchhhHHHHHHHHHHHhhhhhhhhHHHHhhc
Q psy4738 319 IASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDL-SPNYAGTLMAIVNGIGAISGIISPYLIGILV 397 (1188)
Q Consensus 319 i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~ 397 (1188)
.+....+.++.......++.....+...+...+.+...+.......+. ++++||++.|+.+...++++.++|.+.|.+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~ 361 (365)
T TIGR00900 282 GAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA 361 (365)
T ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444333332233333333333444444555555555554 5588999999999999999999999999998
Q ss_pred cCCC
Q psy4738 398 PNNG 401 (1188)
Q Consensus 398 ~~~G 401 (1188)
|..|
T Consensus 362 ~~~g 365 (365)
T TIGR00900 362 DHLG 365 (365)
T ss_pred HHcC
Confidence 8754
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=259.73 Aligned_cols=378 Identities=19% Similarity=0.224 Sum_probs=299.5
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHH
Q psy4738 7 SQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWG 86 (1188)
Q Consensus 7 ~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg 86 (1188)
+.++..+.+..+++.+.+.-...+++..+.|. +|+|.|+.|.+++.+.-.+.
T Consensus 10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~----------------------------~~~~LS~~q~~ll~aiPil~ 61 (417)
T COG2223 10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVFIK----------------------------SDFGLSEGQKGLLVAIPILV 61 (417)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhc----------------------------cccCCCHHHHHHHHHHHHHH
Confidence 34556777888899999999999999999998 79999999999999999999
Q ss_pred HHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhh
Q psy4738 87 YVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR-QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGK 165 (1188)
Q Consensus 87 ~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~-~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~ 165 (1188)
.++..++.|.+.||||.|++...++++..+-.+..+++.+ +|++++++++.+.|++ |+.+.++...+++|||||++|.
T Consensus 62 GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~ 140 (417)
T COG2223 62 GALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGL 140 (417)
T ss_pred hHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhH
Confidence 9999999999999999999999999999999999999832 3455999999999998 7778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCC---CChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHhHHHHHHHHHhh
Q psy4738 166 IGSFVFAGNQIGTVFSSFLSGFLLKYTDGD---WPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGC 242 (1188)
Q Consensus 166 ~~gi~~~~~~lG~~ig~~lgg~l~~~~~~g---Wr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 242 (1188)
++|+.. ..++|..+...++..++.. .| ||..-.+..+..++..+..++...|.|+..+..++.+..+.+...++
T Consensus 141 AlGI~g-~GN~G~av~q~~~P~v~~~--~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~~~~~~v~~~ 217 (417)
T COG2223 141 ALGIAG-AGNLGVAVAQLVAPLVAVA--FGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLPAQLKAVFSN 217 (417)
T ss_pred HHHHhc-cccccHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccchhHHHHHhcC
Confidence 999999 8889999999999999998 88 99999999999888888888899999885443333222223333322
Q ss_pred hhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHH
Q psy4738 243 LAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFT 317 (1188)
Q Consensus 243 ~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~ 317 (1188)
+.. .++....++.++..++|.|++++++.+..++|.......+...+.++.+|+++||++.++. +
T Consensus 218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv----------~ 287 (417)
T COG2223 218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRV----------T 287 (417)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhH----------H
Confidence 222 5666677888999999999999999999999999999999999999999999999997542 2
Q ss_pred HHHHHHHHHHHHHHHhhc------chHHHHHHHHHHHHHHHhhhhhHHHHhhcccCchhhHHHHHHHHHHHhhhhhhhhH
Q psy4738 318 TIASVGPASGVILASYAG------CDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPY 391 (1188)
Q Consensus 318 ~i~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~ 391 (1188)
...+....++........ .+.......+.....+.+.-.......+....|++.|.+.|++..++.+||+.-|.
T Consensus 288 ~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~ 367 (417)
T COG2223 288 LAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPL 367 (417)
T ss_pred HHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhhhhHHHHHHHHhccccccchhH
Confidence 223333333333333322 22344444444444455555555566677778889999999999999999999999
Q ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHHHhhhhh
Q psy4738 392 LIGILVPNNGVLSSLPFLLMWLTAIVAGWFSDYLVS 427 (1188)
Q Consensus 392 l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (1188)
..|...|.+|. +...+.....+.+++..+......
T Consensus 368 ~~g~~~~~tg~-~~~~f~~~~~~~~~a~v~~~~~y~ 402 (417)
T COG2223 368 AFGVSLDLTGS-YTGAFMLLLAFYLVALVLTWALYA 402 (417)
T ss_pred HHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999994 444445555555555544433333
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=281.04 Aligned_cols=354 Identities=16% Similarity=0.145 Sum_probs=258.0
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHH
Q psy4738 7 SQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWG 86 (1188)
Q Consensus 7 ~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg 86 (1188)
++++.....+++++++..+++..+++.+|.+. +++|+|+.+.+++.+.++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----------------------------~~~~~s~~~~~~~~~~~~~~ 67 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQ----------------------------GEFGLTTVQAASLISAAFIS 67 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHhCCCHHHHHHHHHHHHHH
Confidence 45667888889999999999999999999998 68999999999999999999
Q ss_pred HHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhH
Q psy4738 87 YVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI 166 (1188)
Q Consensus 87 ~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~ 166 (1188)
+.+++++.|+++||+|||+++..+.++.++++++++++ +|++.+++.|+++|++.+...+....++.|++|+++|+++
T Consensus 68 ~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~ 145 (496)
T PRK03893 68 RWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFA--PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKA 145 (496)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 99999999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCC--CH--hH-HHHHHH---
Q psy4738 167 GSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYI--SQ--RE-KEYLAD--- 238 (1188)
Q Consensus 167 ~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~--~~--~~-~~~~~~--- 238 (1188)
+++...+..+|..+++.+++.+.+. .|||+.|++..+. ++..+......||+++.++.. .+ ++ .+...+
T Consensus 146 ~~~~~~~~~~g~~~~~~~~~~l~~~--~~w~~~f~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (496)
T PRK03893 146 SGFLISGFSIGAVVAAQVYSLVVPV--WGWRALFFIGILP-IIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEH 222 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--CCHHHHHHHHHHH-HHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchh
Confidence 9999999999999999999999998 8999999874333 232322233334332111000 00 00 000000
Q ss_pred -HHhh----------------hh---------------------------h---------hHHHHHHHHHHHHHHHHHHH
Q psy4738 239 -TIGC----------------LA---------------------------R---------NKIGHDWGLFMISADLPKYM 265 (1188)
Q Consensus 239 -~~~~----------------~~---------------------------~---------~~~~~~~~~~~~~~~lp~yl 265 (1188)
.... .. + ..+......+....++|.|+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l 302 (496)
T PRK03893 223 RIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYL 302 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 0000 00 0 00000000112456889999
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcch-HHHHHHH
Q psy4738 266 KSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCD-QILVVTL 344 (1188)
Q Consensus 266 ~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~-~~~~~~~ 344 (1188)
++.+|++..+.+.+.+...++..++.++.|+++||+++|+. ..++.....+..+........ .......
T Consensus 303 ~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (496)
T PRK03893 303 KTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKA----------YVCSLLISQLLIIPVFAIGGANVWVLGLL 372 (496)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH----------HHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 98899999999999999999999999999999999987532 222222222222222222222 2222122
Q ss_pred -HHHHHHHHhhhhhHHHHhhcccC-chhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCccc
Q psy4738 345 -FTVGMAFMGFFYPSLKVNALDLS-PNYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLS 404 (1188)
Q Consensus 345 -~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~ 404 (1188)
+..+....+ ..+.......+.. ++.||+++|+.+...++|+.++|.+.|.+.|..|...
T Consensus 373 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~ 433 (496)
T PRK03893 373 LFFQQMLGQG-ISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGT 433 (496)
T ss_pred HHHHHHHhcc-cchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHH
Confidence 211222222 2233344455554 4789999999999999999999999999999988543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=288.67 Aligned_cols=384 Identities=15% Similarity=0.135 Sum_probs=258.5
Q ss_pred CcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcc--cchhHHHHHHH
Q psy4738 565 LPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAY--MGPVWLIVWRF 642 (1188)
Q Consensus 565 ~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~--~~~~~l~~~R~ 642 (1188)
...|.++++ |+++++.+++.+.+.+++++++++.|+++||+|||+++..+.++++++.+++++++. .+.+.+++.|+
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLF 128 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHH
Confidence 345677777 999999999999999999999999999999999999999999999999999887641 24567899999
Q ss_pred HHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHH-HHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHh
Q psy4738 643 FEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTV-ISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLF 721 (1188)
Q Consensus 643 l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~-~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~ 721 (1188)
++|++.+..+|.....+.||+|+++|++++++++.+..+|.. .+|+++..+....+ ||+.|++.+++.++..++..+
T Consensus 129 l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g--w~~~f~i~~~~~~~~~~l~~~ 206 (452)
T PRK11273 129 LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFND--WHAALYMPAFAAILVALFAFA 206 (452)
T ss_pred HHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999874 56655444443345 999999999988887777777
Q ss_pred hccCCCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeecCCC
Q psy4738 722 IGYSEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPT 801 (1188)
Q Consensus 722 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1188)
++||+|++.+..+++|.+ + .. .+ +.++ ++.++.+.++.+
T Consensus 207 ~~~~~~~~~~~~~~~~~~---~----~~-~~----~~~~-----~~~~~~~~~~~~------------------------ 245 (452)
T PRK11273 207 MMRDTPQSCGLPPIEEYK---N----DY-PD----DYNE-----KHEQELTAKQIF------------------------ 245 (452)
T ss_pred HccCCHhhcCCCChhhhh---h----cc-cc----cccc-----ccCCCccHHHHH------------------------
Confidence 777776654321111110 0 00 00 0000 000011111110
Q ss_pred cccccccchhHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhcccccccccchhHHHhhhccCcchhHHHHHHHHhhccc
Q psy4738 802 PWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSATSMGPAVGIILASYSGCNKVLAVMFFAIGMGFM 881 (1188)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 881 (1188)
.+...+++.++...+..+......++...++|.|++++.|+++.
T Consensus 246 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~----------------------------------- 289 (452)
T PRK11273 246 -MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD----------------------------------- 289 (452)
T ss_pred -HHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-----------------------------------
Confidence 12245677777777777777777788888999999999888854
Q ss_pred ccccCcccccccCCChhhHHHHHHHHhcccccccccccccccccccccccccccCCCCCCCcchhHHHHhhhhhhcccCC
Q psy4738 882 GFYYPSIRINSLDLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHGKQARYHWTNRAPYSFNFPLFKYVLRKHADKYNRFQ 961 (1188)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1188)
T Consensus 290 -------------------------------------------------------------------------------- 289 (452)
T PRK11273 290 -------------------------------------------------------------------------------- 289 (452)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCchhhhcccchhhHHhhHhhcccchhhhhhcccchhhhccCccchhhHHHHHHHHhhhchhhHHHHhhccchhHHH
Q psy4738 962 DLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASNGLLSALPFLFMWIFSQGAGCLSDFIVERQWFSMTLT 1041 (1188)
Q Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~~~~~~i~~~~~g~lsd~~~~r~~~~~~~~ 1041 (1188)
+++.+..+..++..++.+++|+++||+.+++
T Consensus 290 ------------------------------------------~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r------- 320 (452)
T PRK11273 290 ------------------------------------------KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN------- 320 (452)
T ss_pred ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------
Confidence 2333444555777888999999999995432
Q ss_pred HHHHHHhhhhhhHHHHHhhhcc-CCchHHH-HHHHHHHhhhhccccccccccccC-CCCcchhHHHHHhhhhhhhhhhh-
Q psy4738 1042 RKIFATAASMGPAVGIILASYS-GCNKVLA-VMFFAIGMGFMGFYYPSIRINSLD-LSPNYAATLMAIVNGLGAVSGIF- 1117 (1188)
Q Consensus 1042 r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~- 1117 (1188)
|+...........++...+... ..+.... +.++.++....+... .......| .+++++|+++|+.+..+++|+.+
T Consensus 321 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~ 399 (452)
T PRK11273 321 RGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA 399 (452)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHH-HHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHh
Confidence 1111111112222222222111 1122222 222222222111111 11122234 45567999999999999998765
Q ss_pred hhhhheeecCCCccchhHHHHHHHHHHHHHhhhhhheeccCccc
Q psy4738 1118 SAPLIGIMTPNSTMSEWRLVFWLTFIILAVTNLFYLVFGSAEIQ 1161 (1188)
Q Consensus 1118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1161 (1188)
+|.+.|.+.|..+ |+..|++..+.++++.+....+.+.|++
T Consensus 400 g~~v~g~l~~~~g---~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 440 (452)
T PRK11273 400 ASAIVGYTVDFFG---WDGGFMVMIGGSILAVILLIVVMIGEKR 440 (452)
T ss_pred hhhhHHHHHHHhc---chHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 7999998887743 8999998888877777766666544443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-26 Score=276.63 Aligned_cols=349 Identities=15% Similarity=0.141 Sum_probs=264.8
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhH
Q psy4738 12 LGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMH 91 (1188)
Q Consensus 12 i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~ 91 (1188)
...++++++++...+...+++.+|.+. +|+|+|+.+.+++.+.|.++..+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~----------------------------~~~g~s~~~~~~~~~~~~~~~~~~~ 62 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMA----------------------------QSLGESPLHMHMVIVSYVLTVAVML 62 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH----------------------------HHhCcCHHHHHHHHHHHHHHHHHHH
Confidence 456677888999999999999999998 6899999999999999999999999
Q ss_pred hhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHHH
Q psy4738 92 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF 171 (1188)
Q Consensus 92 ~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~ 171 (1188)
+++|+++||+|||+++..+.+++++++++++++ ++++.+++.|+++|++.+...|....++.|++|+++|+++.++..
T Consensus 63 ~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (471)
T PRK10504 63 PASGWLADRVGVRNIFFTAIVLFTLGSLFCALS--GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVT 140 (471)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999988 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHhH-------------------
Q psy4738 172 AGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQRE------------------- 232 (1188)
Q Consensus 172 ~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~~------------------- 232 (1188)
.+..+|..++|++++.+.++ .|||+.|++..++..+..+......|++++++++.+...
T Consensus 141 ~~~~~g~~~g~~~~g~l~~~--~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 218 (471)
T PRK10504 141 LPGQVGPLLGPALGGLLVEY--ASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSK 218 (471)
T ss_pred HHHHHHHHhhhHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998 899999999988877776666666665543332211100
Q ss_pred ---------------------------HHHH-----HHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Q psy4738 233 ---------------------------KEYL-----ADTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAK 275 (1188)
Q Consensus 233 ---------------------------~~~~-----~~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~ 275 (1188)
++.. .+.++++.. ..++..........+.|.|++...|.+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 298 (471)
T PRK10504 219 GLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFH 298 (471)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 0000 000000000 223333344455667899999889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHh
Q psy4738 276 NGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAG--CDQILVVTLFTVGMAFMG 353 (1188)
Q Consensus 276 ~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~ 353 (1188)
.++...+..++..++.++.+++.||+++|+. ...+....++..+...... .+.............+.+
T Consensus 299 ~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 368 (471)
T PRK10504 299 AGLMMIPMVLGSMGMKRIVVQVVNRFGYRRV----------LVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNS 368 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCchHH----------HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 9999988888888899999999999987532 2233333333322222222 222222222222223333
Q ss_pred hhhh-HHHHhhcccCchhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCc
Q psy4738 354 FFYP-SLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNNGV 402 (1188)
Q Consensus 354 ~~~~-~~~~~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~ 402 (1188)
...+ .......+.+++.+|.++|+.++...+|..++|.+.|.+.+..|+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 369 TRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333 333444556668999999999999999999999999999888765
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=265.94 Aligned_cols=369 Identities=13% Similarity=0.077 Sum_probs=254.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHh
Q psy4738 11 ILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIM 90 (1188)
Q Consensus 11 ~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~ 90 (1188)
..+.+..+++++.+.....+++..+.+.+ +|+|+|++|.+++.+++.++++++
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~---------------------------~~~~ls~~q~g~l~ai~~l~~al~ 86 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNK---------------------------IGFNFTTDQLFLLTALPSVSGALL 86 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------------------hhcCCCHHHHHHHHHHHHHHHHHH
Confidence 46777888999999999999999999873 489999999999999999999999
Q ss_pred HhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhh---ccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHH
Q psy4738 91 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR---QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG 167 (1188)
Q Consensus 91 ~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~---~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~ 167 (1188)
+++.|++.||||+|+++..+++++++.+++++++.+ +|++.+++.|++.|++ +..++.+.+.+++|+|++|||+++
T Consensus 87 rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~ 165 (462)
T PRK15034 87 RVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSAL 165 (462)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHH
Confidence 999999999999999999999999999999998632 6899999999999998 778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-----hcc-----------CCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHh
Q psy4738 168 SFVFAGNQIGTVFSSFLSGFLL-----KYT-----------DGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQR 231 (1188)
Q Consensus 168 gi~~~~~~lG~~ig~~lgg~l~-----~~~-----------~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~ 231 (1188)
|+......+|..+++++...++ +.. ..+||.++++..++.++..++.+++.+|.|+++. +.
T Consensus 166 Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~~--~~- 242 (462)
T PRK15034 166 GINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSRA--SI- 242 (462)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc--CH-
Confidence 9997666677766666555443 210 1347888888888887777766666666543221 11
Q ss_pred HHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q psy4738 232 EKEYLADTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDI 306 (1188)
Q Consensus 232 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~ 306 (1188)
++..+.+++... .+++....+.++..++|.|+++.+ +.........+..+...+..+++|+++||+++++.
T Consensus 243 --~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~v 318 (462)
T PRK15034 243 --ADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRV 318 (462)
T ss_pred --HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHH
Confidence 122222322221 445555566677789999998855 33333323344567788889999999999997532
Q ss_pred cchhHHHHHHHHHHHHHHHHHH-HHHHhhc----chHHHHHHHHHHHHHHHhhhhhHHHHhhcccCc-------------
Q psy4738 307 FSVTVIRKIFTTIASVGPASGV-ILASYAG----CDQILVVTLFTVGMAFMGFFYPSLKVNALDLSP------------- 368 (1188)
Q Consensus 307 l~~~~~r~~~~~i~~~~~~~~l-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------------- 368 (1188)
..++.+...++. ......+ .+.......+...+...+.........+.+..|
T Consensus 319 ----------l~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~ 388 (462)
T PRK15034 319 ----------TLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGS 388 (462)
T ss_pred ----------HHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccc
Confidence 222222222221 1111111 122222222222222333322222222222222
Q ss_pred ---------hhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCccchHHHHHHHHHHHHHHHHHhhh
Q psy4738 369 ---------NYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSDYL 425 (1188)
Q Consensus 369 ---------~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 425 (1188)
++.|.+.|+.+..+.+||++-|.+.|...+..|.+. ..+....+.-+++..+..+.
T Consensus 389 ~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~-~~~~~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 389 DEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPV-GAMKVFLIFYIVCVLLTWLV 453 (462)
T ss_pred hhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHH
Confidence 268999999999999999999999999999988744 33444444444444443333
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=267.41 Aligned_cols=342 Identities=13% Similarity=0.105 Sum_probs=239.4
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHH-hh-hccHHHHHHHHHHHHhhhc
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF-AA-RQSANWLIALRFFEGLGEG 144 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~-a~-~~s~~~lli~R~l~Glg~g 144 (1188)
+|+|+|+++.+++.+.|.+++.++++++|+++||+|||+++..+.++++++++++.. +. .++++.+++.|+++|++.+
T Consensus 41 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~ 120 (402)
T TIGR00897 41 KALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYP 120 (402)
T ss_pred HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchH
Confidence 578999999999999999999999999999999999999999999999998876643 11 2578899999999999998
Q ss_pred cchhHHHHHHhhccCCCchhhHHHHHHHHHHHHH-HHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCC
Q psy4738 145 TTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGT-VFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 223 (1188)
Q Consensus 145 ~~~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~-~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~ 223 (1188)
...+...+.+.+++|+|||++++|+..++..+|. +++|++++.+.+. .||+..+|......++..++.+++.+|.++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (402)
T TIGR00897 121 LFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA--FGEMNTLWSALAFVLTGGVIALFSNKDIFT 198 (402)
T ss_pred HHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cchHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 8888888899999999999999999999999997 6899999999888 787777665544444444445555555433
Q ss_pred CCCCCCHhHHHHHH----HHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 224 SHPYISQREKEYLA----DTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVA 294 (1188)
Q Consensus 224 ~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~ 294 (1188)
+++..++++.++.. ...+.+.. ..++.....+++.++.|.|+++ +|++..+.+.......++..++.+..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~ 277 (402)
T TIGR00897 199 PQHMQTREKFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIF 277 (402)
T ss_pred cccccCCcchhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 21111111111111 11111111 3345556778889999999976 89999999999999999999999999
Q ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHh-hcchHHH-HHHHHHHHHHHHhhhhhHHHHhhcccCchhhH
Q psy4738 295 GWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASY-AGCDQIL-VVTLFTVGMAFMGFFYPSLKVNALDLSPNYAG 372 (1188)
Q Consensus 295 g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g 372 (1188)
|+++||+++|+.. .....+........+..... ..++... ....+..+.+. +...+. .....+..|++||
T Consensus 278 g~l~dr~~~~~~~------~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~-~~~~~~~~~~~~g 349 (402)
T TIGR00897 278 GIVGDKLGWMNTV------RWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFL-AGYVPL-AAVFPTLAPKHKG 349 (402)
T ss_pred HHHHHhhcchhHH------HHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH-HHHHHH-HHHHHhhCcchhH
Confidence 9999999875421 01111111111111111111 1122222 22223333332 233333 3445678889999
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHhhccCCCccchHHHHHHHHHHHHHHHH
Q psy4738 373 TLMAIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWF 421 (1188)
Q Consensus 373 ~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~ 421 (1188)
++.|+.|...++++.++|.+.|.+.|..|. ...+...+++.++....
T Consensus 350 ~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~--~~~~~~~a~~~~i~~~~ 396 (402)
T TIGR00897 350 AAMSVLNLSAGLSAFLAPAIAVLFIGFFGA--IGVVWIFAALYVVSAFL 396 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcch--HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999873 33444444444444433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-27 Score=278.86 Aligned_cols=350 Identities=15% Similarity=0.133 Sum_probs=250.6
Q ss_pred CCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHH
Q psy4738 563 HLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRF 642 (1188)
Q Consensus 563 ~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~ 642 (1188)
.....|.+++|+|+|.++.+++.+.|.+++.+++++.|++.||+|||+++..++.+++++++.+++++ +++++++.|+
T Consensus 28 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~--~~~~ll~~r~ 105 (393)
T PRK09705 28 VGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYP--QSALLLSSAL 105 (393)
T ss_pred cchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCc--chHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999 5667999999
Q ss_pred HHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCchHHHHHHHHHHHHHHHHHHh
Q psy4738 643 FEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLT-NNYWPVVFYLFGAVAILWFVVWLF 721 (1188)
Q Consensus 643 l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~-g~gWr~~F~i~~~~~~~~~~~~~~ 721 (1188)
++|++.+...+....++.|++| +||+++++++.++..+|..+|+.+++.+.++. + ||+.+.+.++..++.....+.
T Consensus 106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~--w~~~~~~~~~~~~~~~~~~~~ 182 (393)
T PRK09705 106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSET--WYQTLAWWALPAVVALFAWWW 182 (393)
T ss_pred HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997 88999999999999999999999999988764 5 999988776665544433333
Q ss_pred hccCCCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeecCCC
Q psy4738 722 IGYSEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPT 801 (1188)
Q Consensus 722 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1188)
..+++|++++ +++.
T Consensus 183 ~~~~~~~~~~----~~~~-------------------------------------------------------------- 196 (393)
T PRK09705 183 QSAREVASSH----KTTT-------------------------------------------------------------- 196 (393)
T ss_pred HhcCCCcccc----CCCc--------------------------------------------------------------
Confidence 3222222110 0000
Q ss_pred cccccccchhHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhcccccccccchhHHHhhhccCcchhHHHHHHHHhhccc
Q psy4738 802 PWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSATSMGPAVGIILASYSGCNKVLAVMFFAIGMGFM 881 (1188)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 881 (1188)
..++.++++..+...+.......++++...++|.|+++ .|+|+.
T Consensus 197 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~----------------------------------- 240 (393)
T PRK09705 197 TPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQ----------------------------------- 240 (393)
T ss_pred CCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChh-----------------------------------
Confidence 00112233444444444455556777888899999987 677754
Q ss_pred ccccCcccccccCCChhhHHHHHHHHhcccccccccccccccccccccccccccCCCCCCCcchhHHHHhhhhhhcccCC
Q psy4738 882 GFYYPSIRINSLDLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHGKQARYHWTNRAPYSFNFPLFKYVLRKHADKYNRFQ 961 (1188)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1188)
T Consensus 241 -------------------------------------------------------------------------------- 240 (393)
T PRK09705 241 -------------------------------------------------------------------------------- 240 (393)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCchhhhcccchhhHHhhHhhcccchhhhhhcccchhhhccCccchhhHHHHHHHHhhhchhhHHHHhhccchhHHH
Q psy4738 962 DLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASNGLLSALPFLFMWIFSQGAGCLSDFIVERQWFSMTLT 1041 (1188)
Q Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~~~~~~i~~~~~g~lsd~~~~r~~~~~~~~ 1041 (1188)
+.|.+..+..+++.++.++.++++||.++|+
T Consensus 241 ------------------------------------------~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~------- 271 (393)
T PRK09705 241 ------------------------------------------YSGSLLALMTLGQAAGALLMPAMARHQDRRK------- 271 (393)
T ss_pred ------------------------------------------hhhHHHHHHHHHHHHHHHHHHHHHhhccchH-------
Confidence 3455566777889999999999999984442
Q ss_pred HHHHHHhhhhhhHHHHHhhhccCCchHHHHHHHHHHhhhhcccccccc-ccccCCC-CcchhHHHHHhhhhhhhhhhhhh
Q psy4738 1042 RKIFATAASMGPAVGIILASYSGCNKVLAVMFFAIGMGFMGFYYPSIR-INSLDLS-PNYAATLMAIVNGLGAVSGIFSA 1119 (1188)
Q Consensus 1042 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~ 1119 (1188)
....+..+.+++.......+.+... ...+..+.+ .+...+... ......+ ++++|++.++.+..+++++.++|
T Consensus 272 ---~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~l~g~g-~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp 346 (393)
T PRK09705 272 ---LLMLALVLQLVGFCGFIWLPLQLPV-LWAMVCGLG-LGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAP 346 (393)
T ss_pred ---HHHHHHHHHHHHHHHHHHccchHHH-HHHHHHHHh-ccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333444444444333222322221 112222222 222222222 2233343 35699999999999999999999
Q ss_pred hhheeecCCCccchhHHHHHHHHHHHHHhhhhhhee
Q psy4738 1120 PLIGIMTPNSTMSEWRLVFWLTFIILAVTNLFYLVF 1155 (1188)
Q Consensus 1120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1155 (1188)
.+.|++.|..+ .|+..|.+.....++..+....+
T Consensus 347 ~~~G~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~ 380 (393)
T PRK09705 347 WFSGVLRSISG--NYLMDWAFHALCVVGLMIITLRF 380 (393)
T ss_pred HHHHHHHHHhC--CchHHHHHHHHHHHHHHHHHHHh
Confidence 99999988753 47788888777766665555444
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=264.50 Aligned_cols=347 Identities=19% Similarity=0.197 Sum_probs=261.9
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhH
Q psy4738 12 LGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMH 91 (1188)
Q Consensus 12 i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~ 91 (1188)
...+..+..++..+......+.+|.+. +++|+|+.+.+++.+.+.+++.+++
T Consensus 9 ~l~~~~~~~~~~~~~~~~~~p~~~~i~----------------------------~~~~~s~~~~~~~~~~~~~~~~~~~ 60 (394)
T PRK11652 9 LLFMLVLLVAVGQMAQTIYVPAIADMA----------------------------RDLNVREGAVQAVMAAYLLTYGLSQ 60 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHH----------------------------HHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 344444555566677778888889988 7899999999999999999999999
Q ss_pred hhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHHH
Q psy4738 92 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF 171 (1188)
Q Consensus 92 ~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~ 171 (1188)
+++|+++||+|||+++..+.++.+++.+++.++ ++++.+++.|+++|++.+...+....+..|++++++|+++.++..
T Consensus 61 ~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (394)
T PRK11652 61 LFYGPLSDRVGRRPVILVGMSIFILGTLVALFA--HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLN 138 (394)
T ss_pred HhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999988 899999999999999999888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHhHHHHHHHHHhhhhh-----h
Q psy4738 172 AGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLAR-----N 246 (1188)
Q Consensus 172 ~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-----~ 246 (1188)
.+..+|..++|++++.+.+. .|||+.|++.+++.++..++..+..||++++++... +.++..++..++... .
T Consensus 139 ~~~~~~~~~g~~i~~~l~~~--~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 215 (394)
T PRK11652 139 MGILVSPLLAPLIGGLLTTL--FGWRACYLFLLLLGAGVTFSMARWMPETRPADARRT-RVLASYRTLLSNRRFNCYLLM 215 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhc--cChHHHHHHHHHHHHHHHHHHHHhCCccCccccchh-HHHHHHHHHHcChHHHHHHHH
Confidence 99999999999999999988 899999999988887766666666666544332211 112222222222111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHH
Q psy4738 247 KIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPAS 326 (1188)
Q Consensus 247 ~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~ 326 (1188)
.+........+..+.|.++++.+|++..+.+++.....++..+++.+.+++.||.++ +......+......
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~---------~~~~~~~~~~~~~~ 286 (394)
T PRK11652 216 LIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST---------LMWQSVICCLLAGL 286 (394)
T ss_pred HHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
Confidence 222223344445667889999899999999999888888888899999999888873 12222222222222
Q ss_pred HHHHHHhh-cchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCchhhHHHHHHHHHHHhhhhhhhhHHHHhhccCC
Q psy4738 327 GVILASYA-GCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNN 400 (1188)
Q Consensus 327 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~ 400 (1188)
.+...... ..+.+.......+...+.+...+.......+..|+++|++.++.+....+|+.+++.+.+.+.+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 361 (394)
T PRK11652 287 LMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLSAMLPQTG 361 (394)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 22222221 122333333344444555566777777777888899999999999999999999999999887653
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=266.26 Aligned_cols=346 Identities=16% Similarity=0.145 Sum_probs=257.2
Q ss_pred HHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhHh
Q psy4738 13 GFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHI 92 (1188)
Q Consensus 13 ~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~~ 92 (1188)
+.+..+.....++....+.+..|.+. +|+|+|+++.+++.+++.+++.++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~p~~~~i~----------------------------~~~~~s~~~~g~~~s~~~~~~~~~~~ 59 (401)
T PRK11043 8 LVYLAGLSMLGFLATDMYLPAFKAIQ----------------------------ADLQTSASAVSASLSLFLAGFALGQL 59 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH----------------------------HHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556667778888888888 68999999999999999999999999
Q ss_pred hHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHHHH
Q psy4738 93 PGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFA 172 (1188)
Q Consensus 93 ~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~~ 172 (1188)
++|+++||+|||+++..+.++.+++.++++++ ++++.+++.|+++|++.+...+...+++.|++|++++++..+....
T Consensus 60 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (401)
T PRK11043 60 LWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV--ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMP 137 (401)
T ss_pred hhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 9999999999999999888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHhHHHHHHHHHhhhhh-----hH
Q psy4738 173 GNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLAR-----NK 247 (1188)
Q Consensus 173 ~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-----~~ 247 (1188)
...+|..++|++++.+.+. .|||+.|++.+.+.++..+..+++.+++++++ +++++....+..++... ..
T Consensus 138 ~~~~~~~~g~~i~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 212 (401)
T PRK11043 138 LVALSPALAPLLGAWLLNH--FGWQAIFATLFAITLLLILPTLRLKPSKKARK---QSQDALTFKQLLKSKTYLGNVLIF 212 (401)
T ss_pred HHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHcCCCCCccc---cchHHHHHHHHHcChhHHHHHHHH
Confidence 9999999999999999998 89999999998888877666655544433221 11122222222222111 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHH
Q psy4738 248 IGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASG 327 (1188)
Q Consensus 248 ~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~ 327 (1188)
......++....+.|.|+++ .|++..+.|+......++..++.+..+++.||+++|+. .+.. .+........
T Consensus 213 ~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~------~~~~-~~~~~~~~~~ 284 (401)
T PRK11043 213 AACSAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQL------LPWL-LVLFAVSVIA 284 (401)
T ss_pred HHHHHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH------HHHH-HHHHHHHHHH
Confidence 23334456677788998876 79999999998888888888999999999999876532 1111 1111111121
Q ss_pred HHHHHhh-cchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCchhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCC
Q psy4738 328 VILASYA-GCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNNG 401 (1188)
Q Consensus 328 l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G 401 (1188)
+...... ..+.........+.....+...+.......+..|+++|++.|+.+..+..++..++.+.|.+.|...
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 359 (401)
T PRK11043 285 IWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSALISTPL 359 (401)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHHccCCCh
Confidence 2222221 2223333333334444555556666666666678899999999999999999999999999988543
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-27 Score=294.44 Aligned_cols=164 Identities=17% Similarity=0.319 Sum_probs=147.7
Q ss_pred cccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH
Q psy4738 566 PEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEG 645 (1188)
Q Consensus 566 a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~G 645 (1188)
..|.++++++++..+.+++.+++.+++.++++++|+++||+|||+++++++++++++++++++++ +.++++++|+++|
T Consensus 189 ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~--s~~~llv~R~l~G 266 (742)
T TIGR01299 189 VLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQ--GYGFFLFCRLLSG 266 (742)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHH
Confidence 45778889999999999999999999999999999999999999999999999999999999998 5677999999999
Q ss_pred hhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-----------CCchHHHHHHHHHHHH
Q psy4738 646 LGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTN-----------NYWPVVFYLFGAVAIL 714 (1188)
Q Consensus 646 ig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g-----------~gWr~~F~i~~~~~~~ 714 (1188)
++.|+..|....+++|++|+++||+.++++.+...+|.++++.++..+....+ .+||+.|++.+++.++
T Consensus 267 ~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll 346 (742)
T TIGR01299 267 FGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVF 346 (742)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888775432 2499999998888777
Q ss_pred HHHHHHhhccCCCCCCcccCh
Q psy4738 715 WFVVWLFIGYSEPGSNPFISQ 735 (1188)
Q Consensus 715 ~~~~~~~~~~~~pe~~~~~~~ 735 (1188)
..+..+++ ||+|+|+..
T Consensus 347 ~ll~~~~l----PESPrwL~~ 363 (742)
T TIGR01299 347 AIGALTFM----PESPRFFLE 363 (742)
T ss_pred HHHHHHHc----CCCHHHHHH
Confidence 76666666 888888644
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=272.75 Aligned_cols=362 Identities=21% Similarity=0.259 Sum_probs=267.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHh
Q psy4738 11 ILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIM 90 (1188)
Q Consensus 11 ~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~ 90 (1188)
.++..++..++..+.|+.+++-+...=. .+|.+....+.+.+.++|+.+|+++
T Consensus 45 ~i~~~~~~~y~~~~~d~~si~~a~l~g~---------------------------~edl~~~~~~l~~~~t~F~v~Yii~ 97 (495)
T KOG2533|consen 45 FILPFLCYLYFHAYLDKSSIVNASLSGL---------------------------KEDLKLVGNQLGVLDTVFYVGYIIG 97 (495)
T ss_pred HHHHHHHHHHHHHhcchhcchhHHHcCC---------------------------ccccchhhhhhhhHHHHHHHHHHHH
Confidence 4555667777888888877765443322 2688889999999999999999999
Q ss_pred HhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHH
Q psy4738 91 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 170 (1188)
Q Consensus 91 ~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~ 170 (1188)
++|+|.|.||++..+.+..+.+.+++.++++... +|++.+++.|++.|+.|++.+|+...+++.||.++||++.+|++
T Consensus 98 ~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~--~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~ 175 (495)
T KOG2533|consen 98 QFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV--HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIW 175 (495)
T ss_pred HhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHH
Confidence 9999999999999999999999999999988888 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhc----cCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHhHHHHHHHHHhhhhh-
Q psy4738 171 FAGNQIGTVFSSFLSGFLLKY----TDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLAR- 245 (1188)
Q Consensus 171 ~~~~~lG~~ig~~lgg~l~~~----~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~- 245 (1188)
.+..++|+++|.+++..+.+. ...||||.|.+.|+++++..++.++++|+.|++.+..+++|+....+..+....
T Consensus 176 ~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~ 255 (495)
T KOG2533|consen 176 YASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSG 255 (495)
T ss_pred HHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCC
Confidence 999999999999999997542 126999999999999999999999999999998877777765433222221000
Q ss_pred -------------------------hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 246 -------------------------NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDY 300 (1188)
Q Consensus 246 -------------------------~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr 300 (1188)
+.++.....+++.+|+|.|+++..|++..+++.+..+..++.+++.+++|.++||
T Consensus 256 ~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr 335 (495)
T KOG2533|consen 256 GIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDR 335 (495)
T ss_pred CcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHH
Confidence 6666777789999999999999778999999999999999999999999999999
Q ss_pred HhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCch-hhHHHHHHHH
Q psy4738 301 LVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPN-YAGTLMAIVN 379 (1188)
Q Consensus 301 ~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g~~~ 379 (1188)
+.. ....|..+.....+...++...+.....+.......+......................++ .+-+..+...
T Consensus 336 ~~~-----~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i 410 (495)
T KOG2533|consen 336 LKT-----IFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAII 410 (495)
T ss_pred Hhh-----hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhh
Confidence 640 0111333333334444444344433332333333333333333332333333333344554 4445555555
Q ss_pred HHHhhhhhhhhHHH-HhhccCCCccchH
Q psy4738 380 GIGAISGIISPYLI-GILVPNNGVLSSL 406 (1188)
Q Consensus 380 ~~~~lgg~i~p~l~-g~l~~~~G~~~~~ 406 (1188)
.....++.++|.+. +......+....+
T Consensus 411 ~~~~s~~~~~~~~~~~~~ap~y~~~~~f 438 (495)
T KOG2533|consen 411 DGTGSAGAISGQLFRSLDAPRYGWGAVF 438 (495)
T ss_pred cchhHHHHhhhhhcccccCcchhhhhHH
Confidence 66666666655554 3333434433333
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-25 Score=263.42 Aligned_cols=359 Identities=17% Similarity=0.139 Sum_probs=243.9
Q ss_pred HHHHHHHHHHHhhhhhHhhHHhh-hcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhHh
Q psy4738 14 FMGFLAVANAYAMRGCLSLAITE-MVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHI 92 (1188)
Q Consensus 14 ~ll~l~~~~~~~~~~~~s~ai~~-m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~~ 92 (1188)
..+.++.++.++......+.+|. +. +|+|+|.++.|++.+++.+++.++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~p~l~~~l~----------------------------~~lg~s~~~~g~~~s~~~~~~~i~~~ 69 (392)
T PRK12382 18 FRIAFAVFLTYMTVGLPLPVIPLFVH----------------------------HDLGFGNTMVGIAVGIQFLATVLTRG 69 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHH----------------------------HhcCCcHHHHHHHHHHHHHHHHHHhh
Confidence 33445566666666666666665 44 68999999999999999999999999
Q ss_pred hHHHhhcccCchHHHHHHHHHHHHHHHHHHH---h---hhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhH
Q psy4738 93 PGGLLAQKFGGKHTLGFGILSTAIFTLLTPF---A---ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI 166 (1188)
Q Consensus 93 ~~G~LaDr~Grk~vl~~~lll~~v~sll~a~---a---~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~ 166 (1188)
++|+++||+||||++..+.+...++++.... . ..++++.+++.|+++|++.+...|+..+++.|++|+|||+++
T Consensus 70 ~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a 149 (392)
T PRK12382 70 YAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKV 149 (392)
T ss_pred hhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchh
Confidence 9999999999999999998887776543322 1 015788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCH-hHHHHHHHHHhhhhh
Q psy4738 167 GSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQ-REKEYLADTIGCLAR 245 (1188)
Q Consensus 167 ~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~ 245 (1188)
+++.+.+...|.+++|++++.+.+. .|||+.+.+.....++... + .++.|++++..++ ++.++..+.......
T Consensus 150 ~~~~~~~~~~g~~~g~~~~~~l~~~--~g~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (392)
T PRK12382 150 MSWNGMAMYGALAAGAPLGLLLHSH--FGFAALALTTMVLPLLAWA---F-NGTVRKVPAHAGERPSLWSVVGLIWKPGL 223 (392)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc--cChHHHHHHHHHHHHHHHH---H-HHhccCCCCCcccCchHHHHHHHHHHhHH
Confidence 9999999999999999999999988 8999987765544333222 1 1222222111111 111111111111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHH
Q psy4738 246 NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPA 325 (1188)
Q Consensus 246 ~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~ 325 (1188)
..............+.|.|+++ .+++ +.+.......++..++++..|++.||+++|+. ...+.....
T Consensus 224 ~~~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~----------~~~~~~~~~ 290 (392)
T PRK12382 224 GLALQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKV----------AIVSLLVET 290 (392)
T ss_pred HHHHHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCee----------hHHHHHHHH
Confidence 2223334556677788888876 4554 35566666777788899999999999998654 122222333
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHh-hcccCchhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCccc
Q psy4738 326 SGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVN-ALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLS 404 (1188)
Q Consensus 326 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~ 404 (1188)
+.++.....++ .........+...+.+...+..... ..+.++++||++.|+.+...++++.++|.+.|.+.|..|+
T Consensus 291 ~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~-- 367 (392)
T PRK12382 291 VGLLLLWLAPT-AWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGY-- 367 (392)
T ss_pred HHHHHHHHccc-HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--
Confidence 33333333332 2222223333333334444444444 3445668999999999999999999999999999998874
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy4738 405 SLPFLLMWLTAIVAGWFS 422 (1188)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~ 422 (1188)
...+...+.+.++.....
T Consensus 368 ~~~~~~~~~~~~~~~~~~ 385 (392)
T PRK12382 368 PSVFLAGAISAVLGIIVT 385 (392)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-27 Score=285.83 Aligned_cols=161 Identities=17% Similarity=0.264 Sum_probs=127.9
Q ss_pred cccccccccCcchhh-hhH-----HHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccch-----
Q psy4738 566 PEESQQYEFDWDETT-QGL-----ILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGP----- 634 (1188)
Q Consensus 566 a~~~i~~~~~~s~~~-~~~-----i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~----- 634 (1188)
..|.+.++++.+.++ .++ +.+++.+++.+++++.|+++||+|||+++..++++++++++++++++|+..
T Consensus 38 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a 117 (490)
T PRK10642 38 VAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWA 117 (490)
T ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 346666777543322 223 257888999999999999999999999999999999999999999995431
Q ss_pred -hHHHHHHHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh--------cCCCCchHHH
Q psy4738 635 -VWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLK--------LTNNYWPVVF 705 (1188)
Q Consensus 635 -~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~--------~~g~gWr~~F 705 (1188)
.+++++|+++|++.|+.+|....++.||+|+++||+..++...+..+|..+|+.+...+.. ..| ||++|
T Consensus 118 ~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~g--WR~~f 195 (490)
T PRK10642 118 PILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWG--WRIPF 195 (490)
T ss_pred HHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCcc--HHHHH
Confidence 2489999999999999999999999999999999999999999888898888877665543 345 99999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCcc
Q psy4738 706 YLFGAVAILWFVVWLFIGYSEPGSNPF 732 (1188)
Q Consensus 706 ~i~~~~~~~~~~~~~~~~~~~pe~~~~ 732 (1188)
++.++++++..++ ...+ ||+|++
T Consensus 196 ~i~~~~~l~~~~~-~~~~---~esp~~ 218 (490)
T PRK10642 196 FIALPLGIIGLYL-RHAL---EETPAF 218 (490)
T ss_pred HHHHHHHHHHHHH-HHcC---CCChhH
Confidence 9987766654433 3333 555543
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=269.42 Aligned_cols=362 Identities=17% Similarity=0.172 Sum_probs=278.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHH
Q psy4738 9 RYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYV 88 (1188)
Q Consensus 9 r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~ 88 (1188)
..+..+++++...++++||..+..+.+++. +.||++++..|++.+.|.+.++
T Consensus 31 ~~~~l~il~~vnlmny~Dr~~iagv~~~v~----------------------------~~fni~~s~~Gll~~vf~v~~~ 82 (493)
T KOG1330|consen 31 PTLTLVILCLVNLMNYADRYTIAGVLKEVQ----------------------------TYFNISDSELGLLQTVFIVVFM 82 (493)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhHHHH----------------------------HhcCCCchhccchhHHHHHHHH
Confidence 456788889999999999999999999998 7899999999999999999999
Q ss_pred HhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHH
Q psy4738 89 IMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS 168 (1188)
Q Consensus 89 i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~g 168 (1188)
+..|+.|+|+|||.||+++..+..+|+++++++++. ..||+++++|.+.|+|++...|.+..+++|.||.++|++.++
T Consensus 83 i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs--~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ 160 (493)
T KOG1330|consen 83 IASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS--NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLG 160 (493)
T ss_pred HHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHH
Confidence 999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHh-------HHHHHHHHHh
Q psy4738 169 FVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQR-------EKEYLADTIG 241 (1188)
Q Consensus 169 i~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~-------~~~~~~~~~~ 241 (1188)
+++.+.++|..+|.+.+..+.+.. +.|||.|+..+++++++.++.+++.+|++++.+...++ ...+.++...
T Consensus 161 ify~~ipvGsglG~vvgs~va~~~-~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~ 239 (493)
T KOG1330|consen 161 IFYFAIPVGSGLGYVVGSVVASLT-FWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKV 239 (493)
T ss_pred HhhhhcccccceeEEeeeeeccCc-cceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHH
Confidence 999999999999999999999883 23999999999999999999999988866533222111 1122222221
Q ss_pred hhh-h-------hHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-ch
Q psy4738 242 CLA-R-------NKIGHDWGLFMISADLPKYMKS---VMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIF-SV 309 (1188)
Q Consensus 242 ~~~-~-------~~~~~~~~~~~~~~~lp~yl~~---~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l-~~ 309 (1188)
... + .....+....++..|.|.+... ..|++..+...+..+...++.+|.+.+|.++||+.++... ..
T Consensus 240 l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~ 319 (493)
T KOG1330|consen 240 LAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGT 319 (493)
T ss_pred HHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccc
Confidence 111 1 4444455555666777777654 3566777888888899999999999999999997663221 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHhhhhh-HHHHhhcccCchhhHHHHHHHHHHHhhhh-
Q psy4738 310 TVIRKIFTTIASVGPASGVILASYAGCD-QILVVTLFTVGMAFMGFFYP-SLKVNALDLSPNYAGTLMAIVNGIGAISG- 386 (1188)
Q Consensus 310 ~~~r~~~~~i~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~g~~~g~~~~~~~lgg- 386 (1188)
..........+......+++........ ....++++.++......... ........++|++|.++.++...+..+.|
T Consensus 320 ~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd 399 (493)
T KOG1330|consen 320 LRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGD 399 (493)
T ss_pred hhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhcc
Confidence 1122233333444444444444443332 34445555555554444433 33455566788999999999888777755
Q ss_pred hhhhHHHHhhccCCC
Q psy4738 387 IISPYLIGILVPNNG 401 (1188)
Q Consensus 387 ~i~p~l~g~l~~~~G 401 (1188)
+-+|++.|.+.|+.-
T Consensus 400 ~~~p~ivGilsd~l~ 414 (493)
T KOG1330|consen 400 AASPYIVGILSDKLR 414 (493)
T ss_pred CCCcceehhHHHHhh
Confidence 556779999998753
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=276.37 Aligned_cols=161 Identities=21% Similarity=0.285 Sum_probs=145.7
Q ss_pred CCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHH
Q psy4738 563 HLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRF 642 (1188)
Q Consensus 563 ~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~ 642 (1188)
.....|.+.+|+|.++++.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++++++ +.+.+++.|+
T Consensus 34 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 111 (406)
T PRK11551 34 AGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAW--DFPSLLVARL 111 (406)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc--cHHHHHHHHH
Confidence 34456888999999999999999999999999999999999999999999999999999999999988 6677999999
Q ss_pred HHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhh
Q psy4738 643 FEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFI 722 (1188)
Q Consensus 643 l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~ 722 (1188)
++|++.+...|...+++.|++|+++|+++.++.+.+..+|..+++.+++.+.+..+ ||+.|++.+++.++..+.....
T Consensus 112 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 189 (406)
T PRK11551 112 LTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA--WRHIFYVGGVGPLLLVPLLMRW 189 (406)
T ss_pred HHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC--HHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998888777 9999999888776666555555
Q ss_pred ccCCC
Q psy4738 723 GYSEP 727 (1188)
Q Consensus 723 ~~~~p 727 (1188)
+||+|
T Consensus 190 l~~~~ 194 (406)
T PRK11551 190 LPESR 194 (406)
T ss_pred CCCCh
Confidence 65544
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-25 Score=259.56 Aligned_cols=359 Identities=15% Similarity=0.063 Sum_probs=258.6
Q ss_pred HHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhHhhHHHhh
Q psy4738 19 AVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLA 98 (1188)
Q Consensus 19 ~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~La 98 (1188)
.++...+......+.+|...+ +++|+|+.+.|++.+++.+...+.+++.|+++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~---------------------------~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~ 57 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLS---------------------------EEVRARPAMIGLFYTGSAIVGIAVSQLLATRS 57 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHH---------------------------cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666665331 68999999999999999999999999999999
Q ss_pred cccCchHHHH-HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhH--HHHHHHHHH
Q psy4738 99 QKFGGKHTLG-FGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI--GSFVFAGNQ 175 (1188)
Q Consensus 99 Dr~Grk~vl~-~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~--~gi~~~~~~ 175 (1188)
||+||||.+. .+.++..++.++++++ ++++.+++.|+++|.+.+...|...+++.|+.|+++|++. .+....+..
T Consensus 58 Dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (375)
T TIGR00899 58 DYQGDRKGLILFCCLLAALACLLFAWN--RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQIS 135 (375)
T ss_pred hccCCchHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHh
Confidence 9999988755 5666667778888888 8999999999999988888899999999999988887755 578888889
Q ss_pred HHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHhHHHHHHHHHhhhh-h----hHHHH
Q psy4738 176 IGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLA-R----NKIGH 250 (1188)
Q Consensus 176 lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~ 250 (1188)
+|.+++|++++.+.+. .|||++|++.+++.++..++.+++.||+|++++...+ +.+.++..+++. . ..+..
T Consensus 136 ~g~~ig~~~~~~l~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 211 (375)
T TIGR00899 136 LAWVIGPPLAFWLALG--FGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGALT--RLEVRGLLASRDTRLLFVACTLM 211 (375)
T ss_pred HHHHHhhhHHHHHHHh--cccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccccC--cchhhhhhcCcchHHHHHHHHHH
Confidence 9999999999999988 8999999999998887777777767776654332111 111111111111 1 12222
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHH
Q psy4738 251 DWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVIL 330 (1188)
Q Consensus 251 ~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~ 330 (1188)
.........++|.|+++.+|.+..+.+...........++.++.|++.||+++|+. ..++.......+..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~----------~~~~~~~~~~~~~~ 281 (375)
T TIGR00899 212 WGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRL----------MLLAALAGVAFYTG 281 (375)
T ss_pred HHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhH----------HHHHHHHHHHHHHH
Confidence 22344456678999999899999999988887777788889999999999987542 12222222222222
Q ss_pred HHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCchhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCccchHHHHH
Q psy4738 331 ASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLL 410 (1188)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~~~~~~~ 410 (1188)
.... ++.+.......+...+.+...+.......+..|++++++.++.+...++|..++|.+.|.+.|..|+ ...+..
T Consensus 282 ~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~--~~~~~~ 358 (375)
T TIGR00899 282 LAAD-NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERWSY--HAVYWF 358 (375)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hhHHHH
Confidence 2222 2233333333333344455556666677788888889999999999999999999999999998774 334444
Q ss_pred HHHHHHHHHHHHh
Q psy4738 411 MWLTAIVAGWFSD 423 (1188)
Q Consensus 411 ~~~~~~~~~~~~~ 423 (1188)
.+++.+++.+...
T Consensus 359 ~~~~~~~~~~~~~ 371 (375)
T TIGR00899 359 AIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHHh
Confidence 5554444444433
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=264.75 Aligned_cols=333 Identities=17% Similarity=0.186 Sum_probs=245.3
Q ss_pred HHHHHHHHHHhhhhhHhhHHhh-hcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhHhh
Q psy4738 15 MGFLAVANAYAMRGCLSLAITE-MVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHIP 93 (1188)
Q Consensus 15 ll~l~~~~~~~~~~~~s~ai~~-m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~~~ 93 (1188)
..++++++.+.++..+++..|. +. +++|+|+.+.+++.+.+.+++.+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~s~~~~~~~~~~~~~~~~~~~~~ 56 (366)
T TIGR00886 5 FSWFGFFLSFSVWFAFSPLAVQMIK----------------------------DDLGLSTAQLGNLVAVPVLAGAVLRII 56 (366)
T ss_pred HHHHHHHHHHHHHHHhHHhhhHHHH----------------------------HHhCCCHHHhhHhhHHHHHHHHHHHHH
Confidence 4677888889999999999996 77 789999999999999999999999999
Q ss_pred HHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHHHH
Q psy4738 94 GGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ-SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFA 172 (1188)
Q Consensus 94 ~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~-s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~~ 172 (1188)
+|+++||+|||+++..+.++..++.++++++ + +++.+++.|+++|++.+ .++....+++|++|++||++++++...
T Consensus 57 ~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~ 133 (366)
T TIGR00886 57 LGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA--VQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAG 133 (366)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHH
Confidence 9999999999999999999999999999998 8 99999999999999955 467788999999999999999999997
Q ss_pred HHHHHHHHHHHHHHHhhhcc--------CCCCChhHH-HHHHHHHHHHHHHhhhcccCCCCCCCCCHhHHH---------
Q psy4738 173 GNQIGTVFSSFLSGFLLKYT--------DGDWPEIFY-LFGILGVLWFVAWCFLCYNDPASHPYISQREKE--------- 234 (1188)
Q Consensus 173 ~~~lG~~ig~~lgg~l~~~~--------~~gWr~~F~-i~g~i~li~~il~~~~~~~~p~~~~~~~~~~~~--------- 234 (1188)
...+|..+++.+++.+.+.. ..+||+.|+ ..+++..+..++.+...+|+|++++...+.+.+
T Consensus 134 ~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (366)
T TIGR00886 134 WGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTG 213 (366)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccch
Confidence 77788887777777666520 148999994 446666666666666666655432211110000
Q ss_pred ---HHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q psy4738 235 ---YLADTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDI 306 (1188)
Q Consensus 235 ---~~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~ 306 (1188)
...+.+++... ..+......+....+.|.|+++.+|++..+.+.+.....+...++.++.|+++||+++|+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~ 293 (366)
T TIGR00886 214 ALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARK 293 (366)
T ss_pred hHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchh
Confidence 11111111111 2233334556778899999999999999999999999999999999999999999997632
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhhhhHHHHhhcccCchhhHHHHHHHHHHHhhh
Q psy4738 307 FSVTVIRKIFTTIASVGPASGVILASYAGC-DQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAIS 385 (1188)
Q Consensus 307 l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~lg 385 (1188)
..........+..++....... +.......+.......+...+.......+..|+++|+++|+.+..+++|
T Consensus 294 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 294 --------LLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRRATGAVSGLVGAIGNLG 365 (366)
T ss_pred --------HHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhchhhcccHHHHHHHhccCC
Confidence 2222222222222222222221 3333344444444555555555666677788899999999999999887
Q ss_pred h
Q psy4738 386 G 386 (1188)
Q Consensus 386 g 386 (1188)
+
T Consensus 366 ~ 366 (366)
T TIGR00886 366 G 366 (366)
T ss_pred C
Confidence 4
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-25 Score=273.54 Aligned_cols=396 Identities=14% Similarity=0.095 Sum_probs=266.9
Q ss_pred CccchHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHH
Q psy4738 4 GCISQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAF 83 (1188)
Q Consensus 4 ~~~~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~ 83 (1188)
++.++++.+..++.++.+....|...++.+.|.+.++. ...+.+.+..+.+++.+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 65 (502)
T TIGR00887 9 PFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVY-----------------------YHGKGPLPSSVSAAVNGSA 65 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------ccCcccchHHHHHHHHHHH
Confidence 56677778888899999999999999999999876200 0012455677889999999
Q ss_pred HHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcc------HHHHHHHHHHHHhhhccchhHHHHHHhhc
Q psy4738 84 YWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQS------ANWLIALRFFEGLGEGTTFPALNTLLAQW 157 (1188)
Q Consensus 84 ~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s------~~~lli~R~l~Glg~g~~~p~~~~li~~~ 157 (1188)
.+++.++++++|+++||+|||+++..+++++.+++++++++ ++ ++.+++.|+++|++.|...|....+++|+
T Consensus 66 ~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~ 143 (502)
T TIGR00887 66 SIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLS--PGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEF 143 (502)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc--cCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999987 54 78999999999999999999999999999
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhc---------------------cCCCCChhHHHHHHHHHHHHHHHhh
Q psy4738 158 VPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY---------------------TDGDWPEIFYLFGILGVLWFVAWCF 216 (1188)
Q Consensus 158 ~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~---------------------~~~gWr~~F~i~g~i~li~~il~~~ 216 (1188)
+|+++|++++++.+....+|.++++.++..+... .+++||++|.+.++.+++ ..++.+
T Consensus 144 ~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i-~~~~~~ 222 (502)
T TIGR00887 144 ATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALL-ALYFRL 222 (502)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999999988776431 014799999777666654 444456
Q ss_pred hcccCCCC---CCCCCHh------------------H-----------HHHHHHHHhh----hh-h-------hHHHHHH
Q psy4738 217 LCYNDPAS---HPYISQR------------------E-----------KEYLADTIGC----LA-R-------NKIGHDW 252 (1188)
Q Consensus 217 ~~~~~p~~---~~~~~~~------------------~-----------~~~~~~~~~~----~~-~-------~~~~~~~ 252 (1188)
++||+|+- +.+..++ | +....+.++. .. + ..+....
T Consensus 223 ~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (502)
T TIGR00887 223 TIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDI 302 (502)
T ss_pred hCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 67887651 1110000 0 0001111110 00 1 1122333
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHH-----------H-HHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHH
Q psy4738 253 GLFMISADLPKYMKSVMKFSIAKNG-----------V-LSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIA 320 (1188)
Q Consensus 253 ~~~~~~~~lp~yl~~~~g~s~~~~g-----------~-l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~ 320 (1188)
.+|+...+.|.++++ .|++..+.+ . ......++.+++.++.+++.||++||+. ..++
T Consensus 303 ~~y~~~~~~p~i~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~----------l~~~ 371 (502)
T TIGR00887 303 AFYGVNLNQKVILSA-IGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPI----------QLMG 371 (502)
T ss_pred HHHccccccHHHHHH-HcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhH----------HHHH
Confidence 456677778999875 677643211 1 2233445666788999999999997532 2233
Q ss_pred HHHHHHHHHHHHhhc---chHHHHHHHHHHHHHHHhhhhhHHHHhhcccCc-hhhHHHHHHHHHHHhhhhhhhhHHHHhh
Q psy4738 321 SVGPASGVILASYAG---CDQILVVTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGTLMAIVNGIGAISGIISPYLIGIL 396 (1188)
Q Consensus 321 ~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~lgg~i~p~l~g~l 396 (1188)
....++++....... ..............+......+.......|..| +.|+++.|+.+.+++++++++|.+.+.+
T Consensus 372 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l 451 (502)
T TIGR00887 372 FFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYL 451 (502)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhh
Confidence 333333322222211 111111111111111122223444555567666 7899999999999999999999999999
Q ss_pred ccCCC--------ccchHHHHHHHHHHHHHHHHHhhhhhcccchhhhh
Q psy4738 397 VPNNG--------VLSSLPFLLMWLTAIVAGWFSDYLVSKNIFSVTVI 436 (1188)
Q Consensus 397 ~~~~G--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (1188)
.|..+ ......+.+.++.+++..+...+.++.+.+..++.
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~~~leei 499 (502)
T TIGR00887 452 AQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKGKSLEEL 499 (502)
T ss_pred hccccccccccccccchHHHHHHHHHHHHHHHHheEeccCCCCCHHhh
Confidence 98643 12234455555555555555555555555555443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.1e-27 Score=280.26 Aligned_cols=153 Identities=18% Similarity=0.215 Sum_probs=127.5
Q ss_pred CCCcccccccccC---cchhhhhHHHHHHHHHHH---HHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccc---
Q psy4738 563 HLLPEESQQYEFD---WDETTQGLILGSFYWGYV---IMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMG--- 633 (1188)
Q Consensus 563 ~~~a~~~i~~~~~---~s~~~~~~i~s~~~l~~~---~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~--- 633 (1188)
.....|.+.+|++ .+..+.++..+.+.+++. +++++.|+++||+||||++..++++++++++++++++|+.
T Consensus 41 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 120 (432)
T PRK10406 41 YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIG 120 (432)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHH
Confidence 3344577778874 555666666666666666 9999999999999999999999999999999999998653
Q ss_pred ---hhHHHHHHHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh--------cCCCCch
Q psy4738 634 ---PVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLK--------LTNNYWP 702 (1188)
Q Consensus 634 ---~~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~--------~~g~gWr 702 (1188)
..+++++|+++|+++|+.+|.+.+++.|++|+++||+..++.+.+...|..+++.++..+.. ..| ||
T Consensus 121 ~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g--Wr 198 (432)
T PRK10406 121 TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWG--WR 198 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccc--hH
Confidence 24699999999999999999999999999999999999999999999999988887766543 345 99
Q ss_pred HHHHHHHHHHHHHHH
Q psy4738 703 VVFYLFGAVAILWFV 717 (1188)
Q Consensus 703 ~~F~i~~~~~~~~~~ 717 (1188)
++|++.++++++...
T Consensus 199 ~~F~i~~~~~ll~~~ 213 (432)
T PRK10406 199 IPFALGAVLAVVALW 213 (432)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998887766543
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-24 Score=256.89 Aligned_cols=359 Identities=13% Similarity=0.061 Sum_probs=252.0
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhH
Q psy4738 12 LGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMH 91 (1188)
Q Consensus 12 i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~ 91 (1188)
-...++++.++..++...+++.+|.+. +|+|+|.++.|++.+.+.+++.+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~lp~~~----------------------------~~~~~s~~~~G~~~s~~~l~~~~~~ 58 (381)
T PRK03633 7 PVLLLLCGLLLLTLAIAVLNTLVPLWL----------------------------AQEHLPTWQVGVVSSSYFTGNLVGT 58 (381)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHH----------------------------HHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 355667888888999999999999999 6899999999999999999999999
Q ss_pred hhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHHH
Q psy4738 92 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF 171 (1188)
Q Consensus 92 ~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~ 171 (1188)
++.|+++||+|||+++..+.++.++++++++++ +|++.+++.|+++|++.+...|...+.+.++.|+++|+++++++.
T Consensus 59 ~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (381)
T PRK03633 59 LLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM--VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYM 136 (381)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHhHHHHHHHHHhhhhh-----h
Q psy4738 172 AGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLAR-----N 246 (1188)
Q Consensus 172 ~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-----~ 246 (1188)
.+..+|..+||++++.+.+. ..|+. ++..+........+. +. +.+|++++. ++ ++...+..++... .
T Consensus 137 ~~~~~g~~~g~~~~~~l~~~--~~~~~-~~~~~~~~~~~~~~~-~~-~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~ 208 (381)
T PRK03633 137 MVYYLGTVLGQLLVSKVSTE--LMSVL-PWVTGLVLAAILPLL-FT-RILNQQAEN-HD--STSIWPMLKLRQARLGVNG 208 (381)
T ss_pred HHHHHHHHHHHHHHhccccc--ccchH-HHHHHHHHHHHHHHH-Hh-cccCCCCCC-CC--CCCHHHHHHhcchHHHHHH
Confidence 99999999999999999876 43433 333333222222222 21 211211111 10 0111111111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHH
Q psy4738 247 KIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPAS 326 (1188)
Q Consensus 247 ~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~ 326 (1188)
.+...........++|.|+++ .|.+..+.+...+...++..++++..|++.||+++|+. ...+.....+
T Consensus 209 ~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~----------l~~~~~~~~~ 277 (381)
T PRK03633 209 CIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLV----------LRVQVFVVIL 277 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHH----------HHHHHHHHHH
Confidence 112222344556788999987 69999999999999999999999999999999987532 2222222222
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhccc-CchhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCccch
Q psy4738 327 GVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDL-SPNYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLSS 405 (1188)
Q Consensus 327 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~~ 405 (1188)
+.+... . ...........+.. .....|.......+. ++++++...+..+...++|+.++|.+.|++.|..|. .
T Consensus 278 ~~~~~~--~-~~~~~~~~~l~g~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~--~ 351 (381)
T PRK03633 278 GSIAML--S-QAAMAPALFILGAA-GFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSD--N 351 (381)
T ss_pred HHHHHh--h-hHHHHHHHHHHHHH-HHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--c
Confidence 222211 1 11111222222222 223455555555554 456778888888889999999999999999998873 3
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q psy4738 406 LPFLLMWLTAIVAGWFSDYL 425 (1188)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~ 425 (1188)
..+...+.+.++......+.
T Consensus 352 ~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 352 LLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34444444444444443333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.2e-25 Score=259.77 Aligned_cols=347 Identities=23% Similarity=0.308 Sum_probs=261.8
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHH
Q psy4738 6 ISQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYW 85 (1188)
Q Consensus 6 ~~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~l 85 (1188)
.++++......++.++....+....+...|.+. +++|+++.+.+++.+.+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~ 63 (398)
T TIGR00895 12 SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAIS----------------------------AEWGLDPVQLGFLFSAGLI 63 (398)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh----------------------------hccCCCHHHHHHHHHHHHH
Confidence 344566677777788888888999999999998 6899999999999999999
Q ss_pred HHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhh
Q psy4738 86 GYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGK 165 (1188)
Q Consensus 86 g~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~ 165 (1188)
++.+++++.|+++||+|||+++..+.++.+++.++.+++ ++++.+++.|+++|++.+...|...+++.|++|+++|++
T Consensus 64 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~ 141 (398)
T TIGR00895 64 GMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA--TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGT 141 (398)
T ss_pred HHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhch
Confidence 999999999999999999999999999999999999988 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHh--------------
Q psy4738 166 IGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQR-------------- 231 (1188)
Q Consensus 166 ~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~-------------- 231 (1188)
++++...+..+|..+++.+++.+.+. .|||+.|++.+.+.++..++.....|++|+.....+++
T Consensus 142 ~~~~~~~~~~~g~~~~~~~~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (398)
T TIGR00895 142 AVGLMFCGYPIGAAVGGFLAGWLIPV--FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQ 219 (398)
T ss_pred hHhhHhhHHHHHHHHHHHHHHHHhhc--ccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999998 89999999988777776666666666654311000000
Q ss_pred ---------------HHHHHHHHHhhhh--h-------hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q psy4738 232 ---------------EKEYLADTIGCLA--R-------NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLM 287 (1188)
Q Consensus 232 ---------------~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~ 287 (1188)
+.+...+...... + ..+......+....++| ++.+..|++..+.+.......++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~ 298 (398)
T TIGR00895 220 AEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGG 298 (398)
T ss_pred ccccccccccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHH
Confidence 0000011011000 0 22333445666777888 555568999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccC
Q psy4738 288 WLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLS 367 (1188)
Q Consensus 288 ~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (1188)
.++.++.++++||+++| ............+++...... +.........+...+.+...+.......+..
T Consensus 299 ~~~~~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 367 (398)
T TIGR00895 299 VIGSIIFGWLADRLGPR----------VTALLLLLGAVFAVLVGSTLF-SPTLLLLLGAIAGFFVNGGQSGLYALMALFY 367 (398)
T ss_pred HHHHHHHHHHHhhcchH----------HHHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999853 111111222222222222122 2333333333334444455555566666655
Q ss_pred -chhhHHHHHHHHHHHhhhhhhhhHHHHhh
Q psy4738 368 -PNYAGTLMAIVNGIGAISGIISPYLIGIL 396 (1188)
Q Consensus 368 -p~~~g~~~g~~~~~~~lgg~i~p~l~g~l 396 (1188)
++.||++.|+.+...+++++++|.+.|.+
T Consensus 368 ~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 368 PTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 47899999999999999999999999975
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-25 Score=261.21 Aligned_cols=367 Identities=13% Similarity=0.052 Sum_probs=254.5
Q ss_pred HHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhHhhHH
Q psy4738 16 GFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGG 95 (1188)
Q Consensus 16 l~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~~~~G 95 (1188)
++++.++..+....+.++.+.+. +|++.++.+.+++.+.|.+++.+.++++|
T Consensus 8 l~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~s~~~~~~~~~~~~l~~~l~~~~~G 59 (393)
T PRK11195 8 IMAAQFFSALADNALLFAAIALL----------------------------KELHYPDWSQPLLQMFFVLAYIVLAPFVG 59 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------------------------HHcCCcHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45566666665544556666666 58888999999999999999999999999
Q ss_pred HhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHHHHHHH
Q psy4738 96 LLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQ 175 (1188)
Q Consensus 96 ~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~~~~~ 175 (1188)
+++||+|||+++..+.+++++++++++++ .+. ++.|+++|++.+...|+..+++.|++|+|||++++++.+....
T Consensus 60 ~laDr~grr~vl~~~~~~~~~~~~~~~~~--~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~ 134 (393)
T PRK11195 60 AFADSFPKGRVMFIANGIKLLGCLLMLFG--IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTI 134 (393)
T ss_pred HhhhccCCchhhHHHHHHHHHHHHHHHHH--HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988877 553 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHhH---HHHHHH---H-Hhhhhh---
Q psy4738 176 IGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQRE---KEYLAD---T-IGCLAR--- 245 (1188)
Q Consensus 176 lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~~---~~~~~~---~-~~~~~~--- 245 (1188)
+|.++||+++|++.+. .|+..|++.+...++. .+..+.+||+|++++..++++ .++..+ . .+++..
T Consensus 135 ~~~~~Gp~lgG~l~~~---~~~~~~~i~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 210 (393)
T PRK11195 135 AAILLGTVLGGALADP---HAEAALAVCALIYLLA-ALFNLFIPRLGARRPGQSWNPIALLRDFFHACRVLWRDKLGRFS 210 (393)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-HHHHhcCCCCcccccccCCCHHHHHHHHHHHHHHHHhCchhHHH
Confidence 9999999999999987 3888887776554433 333455666554332221111 111111 1 111110
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Q psy4738 246 --NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVG 323 (1188)
Q Consensus 246 --~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~ 323 (1188)
...............+|.|+++.+|++..+.|.+.+...++..++++..+++.||.++|+. ...+..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~----------~~~g~~- 279 (393)
T PRK11195 211 LAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRV----------LPAGIL- 279 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccch----------HHHHHH-
Confidence 1112222344555667888999999999999999999999999999999999887665422 122221
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCchh--hHHHHHHHHHHHhhhhhhhhHHHHhhccCCC
Q psy4738 324 PASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNY--AGTLMAIVNGIGAISGIISPYLIGILVPNNG 401 (1188)
Q Consensus 324 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G 401 (1188)
.+...+..... ++.+.......+.+.+.+...+...+..++.+|++ +|++.++.|..++++..++..+.+.+ +..|
T Consensus 280 ~~~~~~~~~~~-~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~ 357 (393)
T PRK11195 280 MGLVVLLMALQ-HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLG 357 (393)
T ss_pred HHHHHHHHHHH-hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcC
Confidence 12222222222 22332333333333334444444445556667653 69999999999999999999999855 6777
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhhhhcccch
Q psy4738 402 VLSSLPFLLMWLTAIVAGWFSDYLVSKNIFS 432 (1188)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (1188)
......+...+...........+..++++++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK11195 358 VPVVAVIVGFGLLVALAMALLWRWHRRNQRQ 388 (393)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666555555555333333344444444444
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-24 Score=257.51 Aligned_cols=314 Identities=18% Similarity=0.225 Sum_probs=231.6
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccc
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTT 146 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~ 146 (1188)
+++|+|+++.+++.+++.+++.++++++|+++||+|||+++..+.++.+++.++++++ ++++.+++.|+++|++.+..
T Consensus 19 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~l~g~~~~~~ 96 (377)
T PRK11102 19 ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA--QTIDQLIYMRFLHGLAAAAA 96 (377)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred hhHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCC
Q psy4738 147 FPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHP 226 (1188)
Q Consensus 147 ~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~ 226 (1188)
.+...+++.|++|+|+|++++++.+.+..+|..++|++++.+.+. .|||+.|++.+.+.++..+...+..+|++++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (377)
T PRK11102 97 SVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW--FSWHAIFWVLALAAILAAALVFFFIPETLPKER 174 (377)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cChHHHHHHHHHHHHHHHHHHHHhCCccCcccc
Confidence 999999999999999999999999999999999999999999998 899999999988888777666666666543322
Q ss_pred CCCHh---HHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 227 YISQR---EKEYLADTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFS 298 (1188)
Q Consensus 227 ~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~ls 298 (1188)
..+.+ +.+...+..++... ..+....+.+....+.|.++.+.+|++..+.+.......+...++.+..+++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~ 254 (377)
T PRK11102 175 RQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFV 254 (377)
T ss_pred cCCCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 11111111211111 22233334556666778888888999999999999999999999999999999
Q ss_pred HHHhccCccchhHHHHHHHHHHHH---HHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCchhhHHHH
Q psy4738 299 DYLVSKDIFSVTVIRKIFTTIASV---GPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLM 375 (1188)
Q Consensus 299 dr~~~r~~l~~~~~r~~~~~i~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~ 375 (1188)
||+++|+. ..++.. ..+..+......+.+.+.............+...+.......+..|+.+|++.
T Consensus 255 ~r~g~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 324 (377)
T PRK11102 255 RRVGALNM----------LRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFPHMAGTAS 324 (377)
T ss_pred HHhCHHHH----------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhccccccchHHH
Confidence 99997532 122221 11222222222222222222222222222333334444556677789999999
Q ss_pred HHHHHHHh-hhhhhhhHHHH
Q psy4738 376 AIVNGIGA-ISGIISPYLIG 394 (1188)
Q Consensus 376 g~~~~~~~-lgg~i~p~l~g 394 (1188)
++.+...+ +++.+++.+.+
T Consensus 325 ~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 325 SLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99887765 45555665543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-26 Score=277.21 Aligned_cols=260 Identities=15% Similarity=0.170 Sum_probs=189.7
Q ss_pred cccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH
Q psy4738 566 PEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEG 645 (1188)
Q Consensus 566 a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~G 645 (1188)
..|.+.+|+|.++.+.+|+.+.|.++..++.+++|+++||+|||+++..+.++++++.+++++++ +.+++++.|+++|
T Consensus 32 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~g 109 (471)
T PRK10504 32 ALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSG--TLNELLLARVLQG 109 (471)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999988 6677999999999
Q ss_pred hhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhccC
Q psy4738 646 LGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYS 725 (1188)
Q Consensus 646 ig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~~ 725 (1188)
++.+...|....++.|++|+++|+++.++......+|..+||.+++.+.+..+ |||.|++..+...+..+......|+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g--w~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 110 VGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS--WHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred hhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999887 9999999998887777666666665
Q ss_pred CCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeecC------
Q psy4738 726 EPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLP------ 799 (1188)
Q Consensus 726 ~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 799 (1188)
.++++++.+................ ... + .+...+ ..+.+.......+..+..+...
T Consensus 188 ~~~~~~r~~~~~~~~~~~~~~~~~~---~~~--~--------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (471)
T PRK10504 188 YTMQTRRFDLSGFLLLAVGMATLTL---ALD--G--------SKGLGL----SPLAIAGLVAVGVVALLLYLLHARNNNR 250 (471)
T ss_pred ccccCCCCChHHHHHHHHHHHHHHH---HHh--c--------CCcCCc----chHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5444332222111111111100000 000 0 000011 1111111111111111111111
Q ss_pred CCcccccccchhHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhccc
Q psy4738 800 PTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVH 846 (1188)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~ 846 (1188)
+....+.++|+++....+..+....+......+.|.|++.+.|.++.
T Consensus 251 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 297 (471)
T PRK10504 251 ALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPF 297 (471)
T ss_pred CccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 11123578899998888877777777766777899999988888764
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-26 Score=278.40 Aligned_cols=160 Identities=21% Similarity=0.297 Sum_probs=138.6
Q ss_pred cCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhccc----chhHHHHHHHHHHhhcc
Q psy4738 574 FDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYM----GPVWLIVWRFFEGLGEG 649 (1188)
Q Consensus 574 ~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~----~~~~l~~~R~l~Gig~g 649 (1188)
.+.++.+.+++.+.+.+++.+++++.|+++||+|||+++..+++++.+++++++++++. +.++++++|+++|++.|
T Consensus 51 ~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 130 (502)
T TIGR00887 51 GPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIG 130 (502)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHh
Confidence 34566788999999999999999999999999999999999999999999999988642 15679999999999999
Q ss_pred cchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc---------------------CCCCchHHHHHH
Q psy4738 650 TTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKL---------------------TNNYWPVVFYLF 708 (1188)
Q Consensus 650 ~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~---------------------~g~gWr~~F~i~ 708 (1188)
+.+|..+.+++|++|+++||+..++.+....+|.++++.++..+... .+.+||++|.+.
T Consensus 131 ~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~ 210 (502)
T TIGR00887 131 GDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFG 210 (502)
T ss_pred hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHH
Confidence 99999999999999999999999999999999999999998876431 112499999998
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcccChhh
Q psy4738 709 GAVAILWFVVWLFIGYSEPGSNPFISQKE 737 (1188)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~pe~~~~~~~~~ 737 (1188)
++++++..+..+++ ||+|||+.+++
T Consensus 211 ~ip~~i~~~~~~~l----pESpr~l~~~~ 235 (502)
T TIGR00887 211 AVPALLALYFRLTI----PETPRYTADVA 235 (502)
T ss_pred HHHHHHHHHHHHhC----CCCHHHHHHhC
Confidence 88888776666666 89999865433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-24 Score=260.39 Aligned_cols=350 Identities=14% Similarity=0.119 Sum_probs=256.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHH
Q psy4738 9 RYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYV 88 (1188)
Q Consensus 9 r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~ 88 (1188)
....++++++.++...+++...++.+|.+. +++|+|+.+.|++.+.|++++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~----------------------------~~~~~s~~~~gl~~~~~~~g~~ 75 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQ----------------------------QAFTLTNFQAGLIQSAFYFGYF 75 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHhCCCHHHHHHHHHHHHHHHH
Confidence 344557778888999999999999999998 7999999999999999999999
Q ss_pred HhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHH---HhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhh
Q psy4738 89 IMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTP---FAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGK 165 (1188)
Q Consensus 89 i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a---~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~ 165 (1188)
+++++.|+++||+|||+++..++++++++++++. ++ ++++.+++.|+++|+|.|...+....++.|+.|+++|.+
T Consensus 76 i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a--~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~ 153 (438)
T PRK10133 76 IIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHF 153 (438)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHH
Confidence 9999999999999999999999999999998863 45 899999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc------------------C------CCCChhHHHHHHHHH-HHHHHHhhhccc
Q psy4738 166 IGSFVFAGNQIGTVFSSFLSGFLLKYT------------------D------GDWPEIFYLFGILGV-LWFVAWCFLCYN 220 (1188)
Q Consensus 166 ~~gi~~~~~~lG~~ig~~lgg~l~~~~------------------~------~gWr~~F~i~g~i~l-i~~il~~~~~~~ 220 (1188)
.+++.+..+.+|..+++.+++.+.... . .+||++|+....+.. +..+......||
T Consensus 154 ~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~ 233 (438)
T PRK10133 154 RLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPA 233 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999988765110 0 256667765443333 322222233343
Q ss_pred CCCCCCCC-CHhH-HHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHH
Q psy4738 221 DPASHPYI-SQRE-KEYLADTIGCLA-----RNKIGHDWGLFMISADLPKYM-KSVMKFSIAKNGVLSSLPFLLMWLTAI 292 (1188)
Q Consensus 221 ~p~~~~~~-~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~lp~yl-~~~~g~s~~~~g~l~~~~~l~~~ig~~ 292 (1188)
.|++++.. ++.+ .+..++.+++.. ...++.....++...|.|.|+ ++.+|+++.+.+....+..++..++++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~ 313 (438)
T PRK10133 234 LQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRF 313 (438)
T ss_pred CCccccccccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 22211110 0000 011111111111 133344445566677889885 667899999999999999999999999
Q ss_pred HHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCchhhH
Q psy4738 293 VAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAG 372 (1188)
Q Consensus 293 ~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g 372 (1188)
..+++.||+++|+. ...+.......++.....+. . .....+.+.+++.+...|.......+..|++.+
T Consensus 314 ~~g~l~~r~g~~~~----------l~~~~~~~~~~~~~~~~~~~-~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~ 381 (438)
T PRK10133 314 TGTWLISRFAPHKV----------LAAYALIAMALCLISAFAGG-H-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTK 381 (438)
T ss_pred HHHHHHHHcCHHHH----------HHHHHHHHHHHHHHHHHcCC-h-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhhc
Confidence 99999999987432 22222222222222222222 2 223445556677777888888888887888888
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHhhccCCC
Q psy4738 373 TLMAIVNGIGAISGIISPYLIGILVPNNG 401 (1188)
Q Consensus 373 ~~~g~~~~~~~lgg~i~p~l~g~l~~~~G 401 (1188)
++.++.+ ...+|+.++|.+.|.+.|..|
T Consensus 382 ~as~l~~-~~~~g~~~~~~i~G~l~~~~g 409 (438)
T PRK10133 382 YGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_pred cchhHHh-HHhccchHHHHHHHHHHHhcc
Confidence 8888886 466789999999999999876
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-27 Score=285.09 Aligned_cols=379 Identities=19% Similarity=0.214 Sum_probs=267.6
Q ss_pred CCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHH
Q psy4738 564 LLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFF 643 (1188)
Q Consensus 564 ~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l 643 (1188)
....|.+.+|+|.+.++.+|+.+.|.+++.++.++.|+++||+|||+++..+.++++++++++++++ +.+.+++.|++
T Consensus 22 ~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 99 (485)
T TIGR00711 22 NVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAP--NLELMIIFRVI 99 (485)
T ss_pred HHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcC--CHHHHHHHHHH
Confidence 3456889999999999999999999999999999999999999999999999999999999999998 56779999999
Q ss_pred HHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhc
Q psy4738 644 EGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIG 723 (1188)
Q Consensus 644 ~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~ 723 (1188)
+|++.+...|....++.|++|+++|+++.+++.....+|..+||.+++.+.++.+ |||.|++.++++++..+...+..
T Consensus 100 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~--w~~~f~~~~~~~~~~~~~~~~~~ 177 (485)
T TIGR00711 100 QGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH--WRWIFLINVPIGIIVVVVAFFIL 177 (485)
T ss_pred HHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC--ceehhhhhhHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999888 99999999998888776666666
Q ss_pred cCCCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeec-----
Q psy4738 724 YSEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYL----- 798 (1188)
Q Consensus 724 ~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 798 (1188)
|+++++++ ++.|+....+.............+.. ..+| ..++.++............+..
T Consensus 178 ~~~~~~~~----~~~d~~g~~l~~~~~~~~~~~~~~~~--------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (485)
T TIGR00711 178 PRDKPAAS----ENFDFLGLLLLSVGLGSLLYGLSEGP--------ERGW---FDSNEILILSITGLVAIIAFVVWELTD 242 (485)
T ss_pred CCcccccc----CCCcHHHHHHHHHHHHHHHHHHhhCC--------CCCC---CCchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55432211 12232222111100000000000000 0011 1111222222222222222211
Q ss_pred -CCCcccccccchhHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhcccccccccchhHHHhhhccCcchhHHHHHHHHh
Q psy4738 799 -PPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSATSMGPAVGIILASYSGCNKVLAVMFFAIG 877 (1188)
Q Consensus 799 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (1188)
.|....+.++++++....+..+......++...++|.|++++.|+|+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~------------------------------- 291 (485)
T TIGR00711 243 DNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTAL------------------------------- 291 (485)
T ss_pred CCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-------------------------------
Confidence 122223578889888888888888888899899999999999998875
Q ss_pred hcccccccCcccccccCCChhhHHHHHHHHhcccccccccccccccccccccccccccCCCCCCCcchhHHHHhhhhhhc
Q psy4738 878 MGFMGFYYPSIRINSLDLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHGKQARYHWTNRAPYSFNFPLFKYVLRKHADKY 957 (1188)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1188)
T Consensus 292 -------------------------------------------------------------------------------- 291 (485)
T TIGR00711 292 -------------------------------------------------------------------------------- 291 (485)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCchhhhcccchhhHHhhHhhcccchhhhhhcccchhhhccCccchhhHHHHHHHHhhhchhhHHHHhhccch
Q psy4738 958 NRFQDLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASNGLLSALPFLFMWIFSQGAGCLSDFIVERQWFS 1037 (1188)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~~~~~~i~~~~~g~lsd~~~~r~~~~ 1037 (1188)
+.|....+..++..++.++.|++.||+++|
T Consensus 292 ----------------------------------------------~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~---- 321 (485)
T TIGR00711 292 ----------------------------------------------QAGLHILPVGLAPMLSSPIAGRMGDKIDPR---- 321 (485)
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHhhcCcH----
Confidence 344556666788889999999999998443
Q ss_pred hHHHHHHHHHhhhhhhHHHHHhhhc-c-CC-chHHHHHHHHHHhhhhccc-cccccccccCCCCcchhHHHHHhhhhhhh
Q psy4738 1038 MTLTRKIFATAASMGPAVGIILASY-S-GC-NKVLAVMFFAIGMGFMGFY-YPSIRINSLDLSPNYAATLMAIVNGLGAV 1113 (1188)
Q Consensus 1038 ~~~~r~~~~~~~~~~~~~~~~~~~~-~-~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1113 (1188)
.....+....+++...... . .. +.........+...+.+.. .+.......+.+++++|.++|+.|..+++
T Consensus 322 ------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 395 (485)
T TIGR00711 322 ------KLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQL 395 (485)
T ss_pred ------HHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHH
Confidence 2445555555555554442 1 21 2222222222222222222 23333344456678899999999999999
Q ss_pred hhhhhhhhheeecCC
Q psy4738 1114 SGIFSAPLIGIMTPN 1128 (1188)
Q Consensus 1114 g~~~~~~~~~~~~~~ 1128 (1188)
|+.+|+.+.+.+.++
T Consensus 396 g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 396 GGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988765
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-26 Score=270.98 Aligned_cols=158 Identities=16% Similarity=0.177 Sum_probs=145.5
Q ss_pred cccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH
Q psy4738 566 PEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEG 645 (1188)
Q Consensus 566 a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~G 645 (1188)
..|.+++|+|.+.++.+++.+.+.+++.+++++.|++.||+|||+++..+.++++++.+++++++ +.+++++.|+++|
T Consensus 25 ~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~--~~~~l~~~r~l~G 102 (382)
T PRK10091 25 VLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSS--SYLMLAIGRLVSG 102 (382)
T ss_pred ChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999 6788999999999
Q ss_pred hhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhccC
Q psy4738 646 LGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYS 725 (1188)
Q Consensus 646 ig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~~ 725 (1188)
++.+...+....++.|++|+++|+++++++..+..+|..++|.+++.+.+..+ ||++|++.+++.++..+..++.+||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g--wr~~f~~~~~~~~~~~~~~~~~lp~ 180 (382)
T PRK10091 103 FPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS--WRYTFLLIAVFNIAVLASIYFWVPD 180 (382)
T ss_pred hhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999998877 9999999999887766655555655
Q ss_pred CC
Q psy4738 726 EP 727 (1188)
Q Consensus 726 ~p 727 (1188)
.+
T Consensus 181 ~~ 182 (382)
T PRK10091 181 IR 182 (382)
T ss_pred CC
Confidence 43
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.2e-27 Score=281.64 Aligned_cols=156 Identities=17% Similarity=0.170 Sum_probs=139.3
Q ss_pred CCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHH-HHH
Q psy4738 564 LLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIV-WRF 642 (1188)
Q Consensus 564 ~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~-~R~ 642 (1188)
....+.+++++|+|.++.+++.+.+.+++.++.++.|+++||+|||++++.+.++++++++++++++ +.+++++ .|+
T Consensus 39 ~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 116 (455)
T TIGR00892 39 TVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSS--NVIELYLTAGF 116 (455)
T ss_pred hhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhh--hHHHHHHHHHH
Confidence 3456889999999999999999999999999999999999999999999999999999999999988 5566764 579
Q ss_pred HHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhh
Q psy4738 643 FEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFI 722 (1188)
Q Consensus 643 l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~ 722 (1188)
++|++.+...+....++.+|+| ++|+++.|+.+++..+|..++|.+++.+.+..| ||+.|++.+++.++..+..+++
T Consensus 117 l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g--wr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 117 ITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG--WRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888888899999996 799999999999999999999999999999888 9999999999887766555555
Q ss_pred cc
Q psy4738 723 GY 724 (1188)
Q Consensus 723 ~~ 724 (1188)
.+
T Consensus 194 ~~ 195 (455)
T TIGR00892 194 RP 195 (455)
T ss_pred CC
Confidence 43
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=258.13 Aligned_cols=371 Identities=18% Similarity=0.150 Sum_probs=261.1
Q ss_pred HHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhh-----HHHHHHHHHHHH
Q psy4738 13 GFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKT-----QGLILSAFYWGY 87 (1188)
Q Consensus 13 ~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~-----~g~l~s~~~lg~ 87 (1188)
...++++.++..+......+.+|.+. +|+|++..+ .+++.+++.+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~----------------------------~~~g~~~~~~~~~~~g~~~~~~~~~~ 67 (408)
T PRK09874 16 LTVAWLGCFLTGAAFSLVMPFLPLYV----------------------------EQLGVTGHSALNMWSGLVFSITFLFS 67 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHH----------------------------HHhCCccchhHHHHHHHHHHHHHHHH
Confidence 33445666777777777888888888 567777554 489999999999
Q ss_pred HHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHH
Q psy4738 88 VIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG 167 (1188)
Q Consensus 88 ~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~ 167 (1188)
.+++++.|+++||+|||+++..+.++.+++.++++++ ++++.+++.|++.|++.+ ..|....++.+++|++||+++.
T Consensus 68 ~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 144 (408)
T PRK09874 68 AIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA--QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWAL 144 (408)
T ss_pred HHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHH
Confidence 9999999999999999999999999999999998888 899999999999999854 5788888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHhHHHHHHHHHhhhhh--
Q psy4738 168 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLAR-- 245 (1188)
Q Consensus 168 gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-- 245 (1188)
++...+..+|..++|++++.+.+. .|||+.|++.+++.++..+..+++.+|++++++...+.+.++..+..++...
T Consensus 145 ~~~~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (408)
T PRK09874 145 GTLSTGGVSGALLGPLAGGLLADS--YGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEMLHMREVVTSLKNPKLVL 222 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhHHHHHHHhCcCCchHH
Confidence 999999999999999999999998 8999999999988887777776766665432211111111111111111111
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHhCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHH
Q psy4738 246 ----NKIGHDWGLFMISADLPKYMKSVMKFSIA---KNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTT 318 (1188)
Q Consensus 246 ----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~---~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~ 318 (1188)
..+...........++|.|+.+..+.... ..+.+.....++..++.+..|+++||+++|+. ..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~----------~~ 292 (408)
T PRK09874 223 SLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKI----------LI 292 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh----------HH
Confidence 11112223334556778888875443222 34566667788888999999999999987543 22
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhccc-CchhhHHHHHHHHHHHhhhhhhhhHHHHhhc
Q psy4738 319 IASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDL-SPNYAGTLMAIVNGIGAISGIISPYLIGILV 397 (1188)
Q Consensus 319 i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~ 397 (1188)
.+......+.+...... +.+...+...+...+.+...+.......+. +++++|+..+..+....+|..++|.+.|.+.
T Consensus 293 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~ 371 (408)
T PRK09874 293 TALIFSVLLLIPMSFVQ-TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAIS 371 (408)
T ss_pred HHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHH
Confidence 22333333333333332 223222232333334444455554444444 4578999999999999999999999999999
Q ss_pred cCCCccchHHHHHHHHHHHHHHHHHhhhhhcc
Q psy4738 398 PNNGVLSSLPFLLMWLTAIVAGWFSDYLVSKN 429 (1188)
Q Consensus 398 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (1188)
+..|+ ...+...+++.++..+...+..+|+
T Consensus 372 ~~~g~--~~~f~~~~~~~l~~~~~~~~~~~~~ 401 (408)
T PRK09874 372 ANYGF--RAVFLVTAGVVLFNAVYSWNSLRRR 401 (408)
T ss_pred hhcch--hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98873 4456666666666655554444333
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=269.07 Aligned_cols=377 Identities=18% Similarity=0.143 Sum_probs=254.1
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhH
Q psy4738 12 LGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMH 91 (1188)
Q Consensus 12 i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~ 91 (1188)
...++.++.++..++...++...+.+..+... +...+-+.+..+.+++.+++.+++.+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 88 (481)
T TIGR00879 29 LSLIAAIGGLMFGYDTGVIGGALALPAFEFKF--------------------TSANSDSYSSSLWGLVVSIFLVGGFIGA 88 (481)
T ss_pred HHHHHHHHHHhcccccchhhhhhhcHHHHHhc--------------------CCcccCCCChhHHHHHHHHHHHHHHHHH
Confidence 33445556677778888888888888731110 0001223568999999999999999999
Q ss_pred hhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhh-hccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHH
Q psy4738 92 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA-RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 170 (1188)
Q Consensus 92 ~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~-~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~ 170 (1188)
+++|+++||+|||+++..+.++++++++++.+.. ..+++.+++.|+++|++.+...+....++.|++|+++|++++++.
T Consensus 89 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 168 (481)
T TIGR00879 89 LFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLY 168 (481)
T ss_pred HHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHH
Confidence 9999999999999999999999999999996652 145668999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH---HHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCC--CCCCHhHHHHH---------
Q psy4738 171 FAGNQIGTVFSSFLS---GFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASH--PYISQREKEYL--------- 236 (1188)
Q Consensus 171 ~~~~~lG~~ig~~lg---g~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~--~~~~~~~~~~~--------- 236 (1188)
+.+..+|.++++.++ +...+. .|||++|++.+...++. ++..++.+|+|+.. +...++.++..
T Consensus 169 ~~~~~~G~~~~~~~~~~~~~~~~~--~~w~~~f~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (481)
T TIGR00879 169 QLAITFGILVAYGFGSGKVSLNNT--LGWRIPLGLQLIPAGLL-FLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGE 245 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCC--ccHHHHHHHHHHHHHHH-HHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCC
Confidence 999999999999999 666666 79999999966555444 44455566665310 00000000000
Q ss_pred ----HH---------------------HHhhh-----hh-------hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Q psy4738 237 ----AD---------------------TIGCL-----AR-------NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVL 279 (1188)
Q Consensus 237 ----~~---------------------~~~~~-----~~-------~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l 279 (1188)
.+ ..... .. ..+...........+.|.++++ .|++..+.+..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~ 324 (481)
T TIGR00879 246 DKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLV 324 (481)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHH
Confidence 00 00000 00 0000111122334556666654 79999888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHH---hh-cc------hHHHHHHHHHHHH
Q psy4738 280 SSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILAS---YA-GC------DQILVVTLFTVGM 349 (1188)
Q Consensus 280 ~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~---~~-~~------~~~~~~~~~~~~~ 349 (1188)
.....++..++.++.++++||+++|+. ..++....+++++... .. .. .............
T Consensus 325 ~~~~~~~~~~~~~~~g~l~d~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (481)
T TIGR00879 325 SIIVGAVNFAFTFVAIFLVDRFGRRPL----------LLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIA 394 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHH----------HHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHH
Confidence 999999999999999999999997532 2222333333333322 11 11 1112222222222
Q ss_pred HHHhhhhhHHHHhhcccCc-hhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCccchHHHHHHHHHHHHHHHHHhh
Q psy4738 350 AFMGFFYPSLKVNALDLSP-NYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSDY 424 (1188)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 424 (1188)
+......+.......|..| +.|+++.|+.+...+++++++|.+.+.+.+..|. ...+...++++++..+....
T Consensus 395 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~--~~~f~~~~~~~~~~~i~~~~ 468 (481)
T TIGR00879 395 FFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGV--GGVFIFFGGLNVLGLIFVYF 468 (481)
T ss_pred HHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--cceehhHHHHHHHHHHHHhe
Confidence 2222233555556566655 7899999999999999999999999999998764 33444555555554444433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=264.31 Aligned_cols=161 Identities=14% Similarity=0.141 Sum_probs=145.3
Q ss_pred CCCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHH
Q psy4738 562 RHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWR 641 (1188)
Q Consensus 562 ~~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R 641 (1188)
...+..|.+++|+|.|+++.++..+.+.+++.+++++.|+++||+||||++..+..+++++.+++++++ +.+.+++.|
T Consensus 31 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~~ 108 (406)
T PRK15402 31 MIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQ--SIEQFTLLR 108 (406)
T ss_pred hHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHH
Confidence 334456788999999999999999999999999999999999999999999999999999999999988 667799999
Q ss_pred HHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHh
Q psy4738 642 FFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLF 721 (1188)
Q Consensus 642 ~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~ 721 (1188)
+++|++.+...+....++.|++|+++|++..++......+|..+||.+++.+.+..+ ||+.|++.+++.++..+..++
T Consensus 109 ~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~--w~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK15402 109 FLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP--WRGMFVLFAALAALSFFGLWR 186 (406)
T ss_pred HHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--ccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999889999999999999998877 999999999888877665555
Q ss_pred hccCC
Q psy4738 722 IGYSE 726 (1188)
Q Consensus 722 ~~~~~ 726 (1188)
..||+
T Consensus 187 ~~~~~ 191 (406)
T PRK15402 187 AMPET 191 (406)
T ss_pred hCCCC
Confidence 55544
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.2e-26 Score=268.21 Aligned_cols=354 Identities=15% Similarity=0.124 Sum_probs=251.3
Q ss_pred CcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q psy4738 565 LPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFE 644 (1188)
Q Consensus 565 ~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~ 644 (1188)
...|++++|+|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+.++++++++++++++ +.+++++.|+++
T Consensus 28 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~l~ 105 (394)
T PRK03699 28 MVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSH--SLALFSIAMFVL 105 (394)
T ss_pred hhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcc--hHHHHHHHHHHH
Confidence 345788999999999999999999999999999999999999999999999999999999999998 567799999999
Q ss_pred HhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCchHHHHHHHHHHHHHHHHHHhhc
Q psy4738 645 GLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLK-LTNNYWPVVFYLFGAVAILWFVVWLFIG 723 (1188)
Q Consensus 645 Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~-~~g~gWr~~F~i~~~~~~~~~~~~~~~~ 723 (1188)
|++.+...+....++.|++|+++|+++.+..+....+|..++|.+.+.+.+ ..+ ||+.|++.+++.++..++.++
T Consensus 106 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g--w~~~f~~~~~~~~~~~~~~~~-- 181 (394)
T PRK03699 106 GVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE--WYWVYACIGLVYVAIFILTLF-- 181 (394)
T ss_pred HHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHHHHHh--
Confidence 999999999999999999999999999999999999999999999888764 456 999999988877766554433
Q ss_pred cCCCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeecCCCcc
Q psy4738 724 YSEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTPW 803 (1188)
Q Consensus 724 ~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (1188)
.+.|+.++ +++++ .+ ++ .+..
T Consensus 182 ~~~p~~~~---~~~~~-----------~~------~~--------~~~~------------------------------- 202 (394)
T PRK03699 182 SEFPALGK---HAPKA-----------DK------PV--------AKEK------------------------------- 202 (394)
T ss_pred cCCccccc---cCccc-----------cC------cc--------cccc-------------------------------
Confidence 22232111 00000 00 00 0000
Q ss_pred cccccchhHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhcccccccccchhHHHhhhccCcchhHHHHHHHHhhccccc
Q psy4738 804 KEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSATSMGPAVGIILASYSGCNKVLAVMFFAIGMGFMGF 883 (1188)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 883 (1188)
.+++++...+..+....+.+++..|+|.|+++.+|+|+.
T Consensus 203 ----~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~------------------------------------- 241 (394)
T PRK03699 203 ----WGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLE------------------------------------- 241 (394)
T ss_pred ----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH-------------------------------------
Confidence 022334444455555566777888999999998898865
Q ss_pred ccCcccccccCCChhhHHHHHHHHhcccccccccccccccccccccccccccCCCCCCCcchhHHHHhhhhhhcccCCCC
Q psy4738 884 YYPSIRINSLDLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHGKQARYHWTNRAPYSFNFPLFKYVLRKHADKYNRFQDL 963 (1188)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1188)
T Consensus 242 -------------------------------------------------------------------------------- 241 (394)
T PRK03699 242 -------------------------------------------------------------------------------- 241 (394)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCchhhhcccchhhHHhhHhhcccchhhhhhcccchhhhccCccchhhHHHHHHHHhhhchhhHHHHhhccchhHHHHH
Q psy4738 964 PPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASNGLLSALPFLFMWIFSQGAGCLSDFIVERQWFSMTLTRK 1043 (1188)
Q Consensus 964 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~~~~~~i~~~~~g~lsd~~~~r~~~~~~~~r~ 1043 (1188)
+.+.+.....++..++.++.++++||+++|+
T Consensus 242 ----------------------------------------~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~--------- 272 (394)
T PRK03699 242 ----------------------------------------DAGNLVSNFWMAYMVGMWIFSFIVRFFDLQR--------- 272 (394)
T ss_pred ----------------------------------------HhhHHHHHHHHHHHHHHHHHHHHHHHhchhh---------
Confidence 3445555666788899999999999985543
Q ss_pred HHHHhhhhhhHHHHHhhhccCCchHHHHHHHHHHhhhhccccccccccccCCCCcchhHHHHHhhhhhhhhhhhhhhhhe
Q psy4738 1044 IFATAASMGPAVGIILASYSGCNKVLAVMFFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGLGAVSGIFSAPLIG 1123 (1188)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 1123 (1188)
.. .....+..+.+..+...+.........+..+. +.+...+.......+..|++++...+..+...++|+.++|.+.|
T Consensus 273 ~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G 350 (394)
T PRK03699 273 IL-TVLAGLALVLMYLFVNTDDPSHLLYAILGLGF-FSSAIYTTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTS 350 (394)
T ss_pred HH-HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHH
Confidence 22 22222333333333332222222222222222 22222333333334455666778888899999999999999999
Q ss_pred eecCCCccchhHHHHHHHHHHHHHhhhhhheeccC
Q psy4738 1124 IMTPNSTMSEWRLVFWLTFIILAVTNLFYLVFGSA 1158 (1188)
Q Consensus 1124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1158 (1188)
.+.+..+ ++..++...++.+++.+..+...+.
T Consensus 351 ~l~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (394)
T PRK03699 351 PIVAHFG---LQAALLTANGLYAVVFVMCILLGFV 382 (394)
T ss_pred HHHHHhC---chhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9988643 7888888777777776655555443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=265.62 Aligned_cols=184 Identities=16% Similarity=0.170 Sum_probs=155.2
Q ss_pred cccchhHHHHHHHHHHHHHhhhhheeeccccccccCCCCCCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhh
Q psy4738 524 STMLEWRLVFWISFGVIMITNVAYVFMGSGKIQSWNEPRHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLA 603 (1188)
Q Consensus 524 ~t~~~wr~vf~i~a~i~l~~~l~~l~~~~~~~q~w~~~~~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~ 603 (1188)
.++..|+.++.+...........+. ...-.|.+.+|+|+++++.++..+.+.+++.+++++.|+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~ 79 (394)
T PRK10213 14 ITRPNWSAVFSVAFCVACLIIVEFL--------------PVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTI 79 (394)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH--------------HHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455677665554444444333332 11124678899999999999999999999999999999999
Q ss_pred hhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHH
Q psy4738 604 QKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGT 683 (1188)
Q Consensus 604 Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~ 683 (1188)
||+|||+++..+.++++++++++++++ +.++++++|+++|++.+...|....++.|++|+++|+++.++..++.++|.
T Consensus 80 Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~ 157 (394)
T PRK10213 80 QATDRRYVVILFAVLLTLSCLLVSFAN--SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIAL 157 (394)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHC--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 677899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhccC
Q psy4738 684 VISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYS 725 (1188)
Q Consensus 684 ~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~~ 725 (1188)
++||.+++.+.+..+ ||++|++.++++++..+......||
T Consensus 158 ~ig~~l~~~l~~~~g--w~~~f~~~~~l~~~~~l~~~~~~p~ 197 (394)
T PRK10213 158 VIAAPLGSFLGELIG--WRNVFNAAAVMGVLCIFWIIKSLPS 197 (394)
T ss_pred HHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999888 9999999988776655444443443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-26 Score=269.57 Aligned_cols=224 Identities=12% Similarity=0.108 Sum_probs=182.5
Q ss_pred CCCCCCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHH
Q psy4738 559 NEPRHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLI 638 (1188)
Q Consensus 559 ~~~~~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~ 638 (1188)
+.+...+..|.+.++++.+.++.++..+.|.++++++++++|+++||+|||+++..+.++++++++++++++ +.++++
T Consensus 31 ~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--~~~~l~ 108 (413)
T PRK15403 31 TTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTT--SMTQFL 108 (413)
T ss_pred HHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcC--CHHHHH
Confidence 334455677889999999999999999999999999999999999999999999999999999999999998 667799
Q ss_pred HHHHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHH
Q psy4738 639 VWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVV 718 (1188)
Q Consensus 639 ~~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~ 718 (1188)
++|+++|++.+...+....++.|++|+++|++++++++....+|..+||.+++.+.+..+ ||+.|++.+++.++..+.
T Consensus 109 ~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g--w~~~f~~~~~~~~i~~~~ 186 (413)
T PRK15403 109 IARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH--WKVLFAIIAVMGLIAFVG 186 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHH
Confidence 999999999987778888899999999999999999999999999999999999998877 999999999988877665
Q ss_pred HHhhccCCCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeec
Q psy4738 719 WLFIGYSEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYL 798 (1188)
Q Consensus 719 ~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1188)
.++.+||++++++ ++.+. .+..
T Consensus 187 ~~~~lp~~~~~~~----~~~~~-~~~~----------------------------------------------------- 208 (413)
T PRK15403 187 LLLAMPETVKRGA----VPFSA-KSVL----------------------------------------------------- 208 (413)
T ss_pred HHHhCCCCccccC----CCCCh-HHHH-----------------------------------------------------
Confidence 5555555432110 00000 0000
Q ss_pred CCCcccccccchhHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhccc
Q psy4738 799 PPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVH 846 (1188)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~ 846 (1188)
..+++.+++++++...+.........++.....|.++++..|+|+.
T Consensus 209 --~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~ 254 (413)
T PRK15403 209 --RDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTS 254 (413)
T ss_pred --HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHH
Confidence 0123455677777776666677777778888899999999888865
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-26 Score=266.62 Aligned_cols=158 Identities=22% Similarity=0.293 Sum_probs=142.6
Q ss_pred CcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q psy4738 565 LPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFE 644 (1188)
Q Consensus 565 ~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~ 644 (1188)
...|.+++|+|+|+++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++++++++++ +.++++++|+++
T Consensus 24 ~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 101 (377)
T TIGR00890 24 LLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIAD--SLAALYLTYGLA 101 (377)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 346889999999999999999999999999999999999999999999999999999999999999 667799999999
Q ss_pred HhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q psy4738 645 GLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGY 724 (1188)
Q Consensus 645 Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~ 724 (1188)
|++.+..++.....+.+|+| |+|+++.++...+..+|..+++.+.+.+.+..+ ||+.|++.+++.++..+..+++++
T Consensus 102 g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~ 178 (377)
T TIGR00890 102 SAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEG--VPAAFIYMGIIFLLVIVLGAFLIG 178 (377)
T ss_pred hHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHhee
Confidence 99999999999999999997 689999999999999999887777777777667 999999999998887777666665
Q ss_pred CCC
Q psy4738 725 SEP 727 (1188)
Q Consensus 725 ~~p 727 (1188)
++|
T Consensus 179 ~~~ 181 (377)
T TIGR00890 179 YPP 181 (377)
T ss_pred cCc
Confidence 443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-26 Score=272.32 Aligned_cols=379 Identities=15% Similarity=0.168 Sum_probs=255.2
Q ss_pred cccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcc--cchhHHHHHHHH
Q psy4738 566 PEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAY--MGPVWLIVWRFF 643 (1188)
Q Consensus 566 a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~--~~~~~l~~~R~l 643 (1188)
..|.+++ +|.++++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++++++++.++ .+.+.+.+.|++
T Consensus 49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 127 (438)
T TIGR00712 49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFL 127 (438)
T ss_pred hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 3455655 5999999999999999999999999999999999999999999999999998876542 245668899999
Q ss_pred HHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCchHHHHHHHHHHHHHHHHHHhh
Q psy4738 644 EGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLK-LTNNYWPVVFYLFGAVAILWFVVWLFI 722 (1188)
Q Consensus 644 ~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~-~~g~gWr~~F~i~~~~~~~~~~~~~~~ 722 (1188)
.|++.+..++.....+.|++|+++||++.++++++..+|..+++.+.+...+ ..+ ||+.|++.+++.++..+..+++
T Consensus 128 ~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--w~~~f~~~~~~~~i~~~~~~~~ 205 (438)
T TIGR00712 128 NGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND--WHAALYFPAICAIIVALFAFAM 205 (438)
T ss_pred HHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999888776443 456 9999999999988877666677
Q ss_pred ccCCCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeecCCCc
Q psy4738 723 GYSEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTP 802 (1188)
Q Consensus 723 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1188)
+||+|++++..+.++.+ + +..+ +..+..+ .+.+.++. .
T Consensus 206 ~~~~~~~~~~~~~~~~~---~---~~~~------~~~~~~~-----~~~~~~~~-------------------------~ 243 (438)
T TIGR00712 206 MRDTPQSCGLPPIEEYR---N---DYPD------DYNEKAE-----QELTAKEI-------------------------F 243 (438)
T ss_pred ccCCHHhcCCCCchhcc---c---cccc------ccccccc-----cccchHHH-------------------------H
Confidence 77766543211111000 0 0000 0000000 00001110 0
Q ss_pred ccccccchhHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhcccccccccchhHHHhhhccCcchhHHHHHHHHhhcccc
Q psy4738 803 WKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSATSMGPAVGIILASYSGCNKVLAVMFFAIGMGFMG 882 (1188)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 882 (1188)
++..++++.++...+..+......++...++|.|++++.|+|+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~------------------------------------ 287 (438)
T TIGR00712 244 MQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALD------------------------------------ 287 (438)
T ss_pred HHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChh------------------------------------
Confidence 12345667777776666666677788888999999998888864
Q ss_pred cccCcccccccCCChhhHHHHHHHHhcccccccccccccccccccccccccccCCCCCCCcchhHHHHhhhhhhcccCCC
Q psy4738 883 FYYPSIRINSLDLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHGKQARYHWTNRAPYSFNFPLFKYVLRKHADKYNRFQD 962 (1188)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 962 (1188)
T Consensus 288 -------------------------------------------------------------------------------- 287 (438)
T TIGR00712 288 -------------------------------------------------------------------------------- 287 (438)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCchhhhcccchhhHHhhHhhcccchhhhhhcccchhhhccCccchhhHHHHHHHHhhhchhhHHHHhhccchhHHHH
Q psy4738 963 LPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASNGLLSALPFLFMWIFSQGAGCLSDFIVERQWFSMTLTR 1042 (1188)
Q Consensus 963 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~~~~~~i~~~~~g~lsd~~~~r~~~~~~~~r 1042 (1188)
+.+++..+..+...++.+++|+++||++++++
T Consensus 288 -----------------------------------------~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~------- 319 (438)
T TIGR00712 288 -----------------------------------------KSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNR------- 319 (438)
T ss_pred -----------------------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-------
Confidence 34444556667888999999999999965431
Q ss_pred HHHHHhhhhhhHHHHHhhhcc-CCchHHH-HHHHHHHhhhhccccccccccccC-CCCcchhHHHHHhhhhhhhhh-hhh
Q psy4738 1043 KIFATAASMGPAVGIILASYS-GCNKVLA-VMFFAIGMGFMGFYYPSIRINSLD-LSPNYAATLMAIVNGLGAVSG-IFS 1118 (1188)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~-~~~ 1118 (1188)
............++....... ..+.... ..++.++.+..+... .......+ .++++||+++|+.+..+++++ +++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~g 398 (438)
T TIGR00712 320 GATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAA 398 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHH-HHHHHHHHhcChhheeeehhhhchHHHhhhhhhc
Confidence 111111111111122211111 1122222 122222221111111 11122334 455679999999999999886 589
Q ss_pred hhhheeecCCCccchhHHHHHHHHHHHHHhhhhhheecc
Q psy4738 1119 APLIGIMTPNSTMSEWRLVFWLTFIILAVTNLFYLVFGS 1157 (1188)
Q Consensus 1119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1157 (1188)
|.+.|.+.|..+ |+.+|++..++.+++.+..+++.+
T Consensus 399 p~l~G~l~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~ 434 (438)
T TIGR00712 399 SAIVGYTVDFFG---WDGGFMVMIGGSILAVILLIVVMI 434 (438)
T ss_pred chhHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988653 888888887777777666655543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-24 Score=251.63 Aligned_cols=234 Identities=15% Similarity=0.202 Sum_probs=192.3
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccc
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTT 146 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~ 146 (1188)
+++|.|+++.++..+.+.+++.+++++.|+++||+|||+++..+.++++++.+++.++ ++++.+++.|+++|++.+..
T Consensus 31 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~--~~~~~~~~~~~l~g~~~~~~ 108 (392)
T PRK10473 31 ADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA--ETSSLFLAGRFLQGIGAGCC 108 (392)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHhhhhHH
Confidence 6899999999999999999999999999999999999999999999999999999988 89999999999999999999
Q ss_pred hhHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCC
Q psy4738 147 FPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHP 226 (1188)
Q Consensus 147 ~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~ 226 (1188)
.+...+++.|++|++||++++++.+....+|..++|.+++.+.+. .|||+.|++.+.++++..++..+..+|++++++
T Consensus 109 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~--~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 186 (392)
T PRK10473 109 YVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK--FPWQSLFYTMAAMGILVLLLSLFILKETRPARA 186 (392)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--cChHHHHHHHHHHHHHHHHHHHHHcCCCCCccc
Confidence 999999999999999999999999999999999999999998887 899999999998888877776666666544322
Q ss_pred CCCHhHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 227 YISQREKEYLADTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYL 301 (1188)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~ 301 (1188)
..++++.+...+.+++... ..............+.|.++++.+|++..+.+.+.+...++..++.+..+++.||+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~ 266 (392)
T PRK10473 187 PAASSKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF 266 (392)
T ss_pred CCccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111111111122222111 11112223334556678888888999999999999999999999999999999999
Q ss_pred hcc
Q psy4738 302 VSK 304 (1188)
Q Consensus 302 ~~r 304 (1188)
++|
T Consensus 267 g~~ 269 (392)
T PRK10473 267 KPR 269 (392)
T ss_pred CHH
Confidence 864
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-24 Score=253.03 Aligned_cols=337 Identities=16% Similarity=0.118 Sum_probs=236.7
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccc
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTT 146 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~ 146 (1188)
+++|+|+.+.|++.+.+.+...+.++++|+++||+|||+++..+.++.+++.++++++ ++++.+++.|+++|++.+..
T Consensus 39 ~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~g~~~~~~ 116 (400)
T PRK11646 39 DQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA--HEPWLLWLSCILSGLGGTLF 116 (400)
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999988 89999999999999999989
Q ss_pred hhHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCC
Q psy4738 147 FPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHP 226 (1188)
Q Consensus 147 ~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~ 226 (1188)
.|...+++.|++|+|+|++++|+......+|..+||++++++. . .|||++|++.+.+.++..++..+..||.++++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~--~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~ 193 (400)
T PRK11646 117 DPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-Q--YDFRLVCATGAVLFVLAAAFNAWLLPAYKLSTV 193 (400)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--hhHHHHHHHHHHHHHHHHHHHHHhCCccccccc
Confidence 9999999999999999999999999999999999999999998 5 699999999888877766555555554322111
Q ss_pred CCCHhHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 227 YISQREKEYLADTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYL 301 (1188)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~ 301 (1188)
.++.++...+..+.... ..+...........++|.|+++..+ +..+.+.+.+...+....+....++..||.
T Consensus 194 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r 270 (400)
T PRK11646 194 --RTPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKR 270 (400)
T ss_pred --chhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111111122211111 1111111222345678999988655 667888888777776666655556666543
Q ss_pred hccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccC-chhhHHHHHHHHH
Q psy4738 302 VSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLS-PNYAGTLMAIVNG 380 (1188)
Q Consensus 302 ~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~~~g~~~~ 380 (1188)
.+. ++ ....+....++..+.....++ .........+...+.+...+.......+.. ++++|+++|+.+.
T Consensus 271 ~~~--------~~-~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~ 340 (400)
T PRK11646 271 FRL--------EH-RLMAGLLIMSLSMFPIGMVSN-LQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRL 340 (400)
T ss_pred cch--------hH-HHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHH
Confidence 221 11 122333333344433333332 222222222233333344455555665655 5899999999999
Q ss_pred HHhhhhhhhhHHHHhhccCCCc--cchHHHHHHHHHHHHHHHH
Q psy4738 381 IGAISGIISPYLIGILVPNNGV--LSSLPFLLMWLTAIVAGWF 421 (1188)
Q Consensus 381 ~~~lgg~i~p~l~g~l~~~~G~--~~~~~~~~~~~~~~~~~~~ 421 (1188)
..++|..++|.+.|.+.|..+. .....+...+.+.+.....
T Consensus 341 ~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 341 GLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999998653 2234444444444444443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.9e-26 Score=275.14 Aligned_cols=157 Identities=18% Similarity=0.277 Sum_probs=133.1
Q ss_pred cccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhh---------ccc-chhHHHHHH
Q psy4738 572 YEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMA---------AYM-GPVWLIVWR 641 (1188)
Q Consensus 572 ~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a---------~~~-~~~~l~~~R 641 (1188)
+|+++++.+.+++.+.+.+++.++++++|+++||+||||++..+.++++++++.++++ ++. ..+.++++|
T Consensus 48 ~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R 127 (479)
T PRK10077 48 LSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYR 127 (479)
T ss_pred ccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHH
Confidence 3458999999999999999999999999999999999999999999999999988864 111 245688999
Q ss_pred HHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcC------CCCchHHHHHHHHHHHHH
Q psy4738 642 FFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLT------NNYWPVVFYLFGAVAILW 715 (1188)
Q Consensus 642 ~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~------g~gWr~~F~i~~~~~~~~ 715 (1188)
+++|++.|+.+|...++++|++|+++||+++++.+.+..+|.++++.+++.+.+.. ..|||++|++.+++.++.
T Consensus 128 ~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~ 207 (479)
T PRK10077 128 IIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLF 207 (479)
T ss_pred HHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887665311 124999999998888776
Q ss_pred HHHHHhhccCCCCCCcc
Q psy4738 716 FVVWLFIGYSEPGSNPF 732 (1188)
Q Consensus 716 ~~~~~~~~~~~pe~~~~ 732 (1188)
.+..+ ++ ||+|++
T Consensus 208 ~~~~~-~l---~~s~~~ 220 (479)
T PRK10077 208 LMLLY-FV---PETPRY 220 (479)
T ss_pred HHHHH-cC---CCCcHH
Confidence 65544 44 445544
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-23 Score=250.26 Aligned_cols=338 Identities=15% Similarity=0.099 Sum_probs=233.0
Q ss_pred CcccCChhhHHHHHHHH-HHHHHHhHhhHHHhhcccCchHHH-HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhc
Q psy4738 67 NEFDWDEKTQGLILSAF-YWGYVIMHIPGGLLAQKFGGKHTL-GFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEG 144 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~-~lg~~i~~~~~G~LaDr~Grk~vl-~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g 144 (1188)
+|+|+|+++.|++.+.+ ..++..+++++|+ +||+||||.+ ..+.++.+++..+.+++ ++++.+++.|.+.|...+
T Consensus 44 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 120 (393)
T PRK15011 44 DEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN--RNYFVLLFVGVFLSSFGS 120 (393)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHH
Confidence 68999999999998765 5577777766777 9999999874 56667667888888888 889987766655555556
Q ss_pred cchhHHHHHHhhccCCCch--hhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCC
Q psy4738 145 TTFPALNTLLAQWVPPTER--GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP 222 (1188)
Q Consensus 145 ~~~p~~~~li~~~~p~~~R--g~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p 222 (1188)
...|...+++.|+.|+++| +...++..++..+|.++||++++.+.++ .|||+.|++.++.+++..+.+++..||.|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~--~gw~~~f~~~~~~~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 121 TANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG--FSFTVMYLSAAVAFIVCGVMVWLFLPSMR 198 (393)
T ss_pred hhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence 7789999999998877766 3456888999999999999999999998 89999999999988888777777777765
Q ss_pred CCCCCCCHhHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 223 ASHPYISQREKEYLADTIGCLA---RNKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSD 299 (1188)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsd 299 (1188)
++++...+ +.+...+..+... ..........+....++|.|+++.+|++..+.+.+.....+..+++.++.|+++|
T Consensus 199 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~d 277 (393)
T PRK15011 199 KELPLATG-TLEAPRRNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAK 277 (393)
T ss_pred CCCccccc-cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54332111 1111111000000 0112222334455678999999999999999999888878888889999999999
Q ss_pred HHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCchhhHHHHHHHH
Q psy4738 300 YLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVN 379 (1188)
Q Consensus 300 r~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~ 379 (1188)
|+++|+. ...+.......+...... .+.........+.....+...+.......+..|+++|+++++.+
T Consensus 278 r~g~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~ 346 (393)
T PRK15011 278 RLGKRFL----------MRVAAVAGVCFYAGMLMA-HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYT 346 (393)
T ss_pred HhChHHH----------HHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 9987532 112222222222222222 22332233333333333444444455567778888999999999
Q ss_pred HHHhhhhhhhhHHHHhhccCCCccchHHHHHHHHHHHHHHHHHh
Q psy4738 380 GIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSD 423 (1188)
Q Consensus 380 ~~~~lgg~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~~ 423 (1188)
...++|+.++|.+.|.+.|..| +...+....+..++..+...
T Consensus 347 ~~~~lg~~~g~~l~G~i~~~~g--~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK15011 347 NTSRVGWIIAGSLAGIVAEIWN--YHAVFWFALVMIIATLFCLL 388 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876 33444444444444443333
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=264.61 Aligned_cols=151 Identities=17% Similarity=0.262 Sum_probs=138.5
Q ss_pred CcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q psy4738 565 LPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFE 644 (1188)
Q Consensus 565 ~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~ 644 (1188)
...|.+++|+|.++++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++++++++++ +++.+++.|+++
T Consensus 33 ~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~ 110 (405)
T TIGR00891 33 LVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAP--GYITMFIARLVI 110 (405)
T ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHH
Confidence 345788999999999999999999999999999999999999999999999999999999999998 667799999999
Q ss_pred HhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHH
Q psy4738 645 GLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFV 717 (1188)
Q Consensus 645 Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~ 717 (1188)
|++.+..++...+++.|++|+++|+++.++.+++..+|.++++.+++.+.+..+.+||+.|++..++.++..+
T Consensus 111 G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~ 183 (405)
T TIGR00891 111 GIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALW 183 (405)
T ss_pred HhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887655699999987665555443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-24 Score=256.87 Aligned_cols=344 Identities=15% Similarity=0.072 Sum_probs=249.2
Q ss_pred HHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhHhhHHH
Q psy4738 17 FLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGGL 96 (1188)
Q Consensus 17 ~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~ 96 (1188)
+...++..+......+.+|... ++++.++.+.|++.+.+.+++.+++++.|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~ 74 (417)
T PRK10489 23 FIARFISIFGLGLLGVAVPVQI----------------------------QMMTGSTLQVGLSVTLTGGAMFIGLMVGGV 74 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHCCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3345566666677788888887 578889999999999999999999999999
Q ss_pred hhcccCchHHHHHHHHHHHHHHHHHHH---hhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHHHHH
Q psy4738 97 LAQKFGGKHTLGFGILSTAIFTLLTPF---AARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAG 173 (1188)
Q Consensus 97 LaDr~Grk~vl~~~lll~~v~sll~a~---a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~~~ 173 (1188)
++||+|||+++..+.++.+++.+..+. ...++++.+++.|+++|++.+...|+..+++.|++|+++|+++.++...+
T Consensus 75 l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (417)
T PRK10489 75 LADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLT 154 (417)
T ss_pred HhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999988888877666543 11267899999999999999988999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCH--hH-HHHHHHHHhhhhh-----
Q psy4738 174 NQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQ--RE-KEYLADTIGCLAR----- 245 (1188)
Q Consensus 174 ~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~--~~-~~~~~~~~~~~~~----- 245 (1188)
..+|.++||++++.+.+. .|||+.|++.++..++..+..+. .|+++++++..++ ++ ++..+...++...
T Consensus 155 ~~~g~~~g~~l~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (417)
T PRK10489 155 VRLGSVISPALGGLLIAA--GGVAWNYGLAAAGTFITLLPLLR-LPALPPPPQPREHPLRSLLAGFRFLLASPVVGGIAL 231 (417)
T ss_pred HhHHHHhHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHh-CCCCCCCCcccccchHHHHHHHHHHHcChHHHHHHH
Confidence 999999999999999988 89999999887776665554443 4444332211111 11 1111111111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHH
Q psy4738 246 NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPA 325 (1188)
Q Consensus 246 ~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~ 325 (1188)
..++ .........++|.|+++.+|++..+.|.+.+...++..++.++.+++.||.++++ ....+....+
T Consensus 232 ~~~~-~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~----------~l~~~~~~~~ 300 (417)
T PRK10489 232 LGGL-LTMASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGL----------LMLLSTLGSF 300 (417)
T ss_pred HHHH-HHHHHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcch----------HHHHHHHHHH
Confidence 1111 1223456778999999999999999999999999999999999999998744321 1222333333
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCc-hhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCcc
Q psy4738 326 SGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVL 403 (1188)
Q Consensus 326 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~ 403 (1188)
++++.....+ +.........+...+.+...+.......+..| +.||++.|+.+...++|+.++|.+.|.+.|..|..
T Consensus 301 ~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~ 378 (417)
T PRK10489 301 LAVGLFGLMP-MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPV 378 (417)
T ss_pred HHHHHHHccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchh
Confidence 3333333332 22222233333333344444555556666555 68999999999999999999999999999988753
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=268.26 Aligned_cols=144 Identities=21% Similarity=0.305 Sum_probs=134.7
Q ss_pred CcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q psy4738 565 LPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFE 644 (1188)
Q Consensus 565 ~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~ 644 (1188)
...|.+++|+|+|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++++++++++ +.+.++++|+++
T Consensus 39 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~ 116 (426)
T PRK12307 39 YIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLAS--GVIMLTLSRFIV 116 (426)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHH
Confidence 345788899999999999999999999999999999999999999999999999999999999998 667799999999
Q ss_pred HhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHH
Q psy4738 645 GLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVA 712 (1188)
Q Consensus 645 Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~ 712 (1188)
|++.+..++....++.|++|+++|+++.+++..+..+|.++++.+.+.+.+..+ ||+.|++..+..
T Consensus 117 G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~--w~~~f~i~~~~~ 182 (426)
T PRK12307 117 GMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG--WRAAFFVGLLPV 182 (426)
T ss_pred HHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC--HHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988877 999999865443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-23 Score=243.25 Aligned_cols=344 Identities=31% Similarity=0.483 Sum_probs=277.4
Q ss_pred HHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhHhhH
Q psy4738 15 MGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHIPG 94 (1188)
Q Consensus 15 ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~~~~ 94 (1188)
.+.+..+....+....++..|.+. +++|.++.+.+++.+.+.++..+++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLA----------------------------EDLGLSASQAGLIVSAFSLGYALGSLLA 54 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHH----------------------------HHcCCCHHHHHHHHHHHHHHHHHHHHhH
Confidence 455677888888899999999988 6789999999999999999999999999
Q ss_pred HHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHHHHHH
Q psy4738 95 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGN 174 (1188)
Q Consensus 95 G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~~~~ 174 (1188)
|+++||+|||+.+..+.++..++.++.++. ++++.+++.|+++|++.+...+...+++.|++|+|||++.+++.....
T Consensus 55 g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (352)
T cd06174 55 GYLSDRFGRRRVLLLGLLLFALGSLLLAFA--SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGF 132 (352)
T ss_pred HHHHHHhCCchhhHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHH
Confidence 999999999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHhHHHHHHHHHhhhhhhHHHHHHHH
Q psy4738 175 QIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLARNKIGHDWGL 254 (1188)
Q Consensus 175 ~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1188)
.+|..++|.+++.+.+. .+||+.|++.+.+.++..+...++. +.........+......
T Consensus 133 ~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 191 (352)
T cd06174 133 GLGALLGPLLGGLLAES--LGWRWLFLILAILGLLLALLLLFLL-------------------RLLLLLALAFFLLSFGY 191 (352)
T ss_pred HHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHhHH
Confidence 99999999999999998 7899999999888877766655542 11111122345556667
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4738 255 FMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYA 334 (1188)
Q Consensus 255 ~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~ 334 (1188)
.....+.|.++++..|.+..+.+.......++..++.++.+++.||.++|+. ...++.....++.+.....
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~~~~~~~~ 262 (352)
T cd06174 192 YGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRL---------LLLIGLLLAALGLLLLALA 262 (352)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---------HHHHHHHHHHHHHHHHHHh
Confidence 7888899999999889999999999999999999999999999999986531 3344444444444444443
Q ss_pred cchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCc-hhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCccchHHHHHHHH
Q psy4738 335 GCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWL 413 (1188)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~~~~~~~~~~ 413 (1188)
.+ .........+...+.+...+.......+..| ++|++..|+.+...++++.++|.+.|.+.|..+. ...+...+.
T Consensus 263 ~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~--~~~~~~~~~ 339 (352)
T cd06174 263 PS-LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGY--GGVFLILAA 339 (352)
T ss_pred cc-HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc--chHHHHHHH
Confidence 33 3333344444444555555666666666555 8999999999999999999999999999987664 334444444
Q ss_pred HHHHHHHH
Q psy4738 414 TAIVAGWF 421 (1188)
Q Consensus 414 ~~~~~~~~ 421 (1188)
..++..+.
T Consensus 340 ~~~i~~i~ 347 (352)
T cd06174 340 LALLAALL 347 (352)
T ss_pred HHHHHHHH
Confidence 44444433
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-25 Score=272.45 Aligned_cols=158 Identities=23% Similarity=0.381 Sum_probs=144.4
Q ss_pred cccccccccCcc---hhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHH
Q psy4738 566 PEESQQYEFDWD---ETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRF 642 (1188)
Q Consensus 566 a~~~i~~~~~~s---~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~ 642 (1188)
..+.+.+|++++ +.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++++++++++ +++.+++.|+
T Consensus 111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~r~ 188 (505)
T TIGR00898 111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSP--NYTVFLVFRL 188 (505)
T ss_pred ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcc--cHHHHHHHHH
Confidence 457899999999 89999999999999999999999999999999999999999999999999999 6677999999
Q ss_pred HHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhh
Q psy4738 643 FEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFI 722 (1188)
Q Consensus 643 l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~ 722 (1188)
++|++.++..+....++.|++|+++|+++.++...+..+|.+++|.+++.+.+ ||+.|++.+++.++..+..+++
T Consensus 189 l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-----wr~~~~~~~i~~~~~~~~~~~~ 263 (505)
T TIGR00898 189 LVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD-----WRWLQLAVSLPTFLFFLLSWFV 263 (505)
T ss_pred HHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999887753 9999999999888777666554
Q ss_pred ccCCCCCCcccC
Q psy4738 723 GYSEPGSNPFIS 734 (1188)
Q Consensus 723 ~~~~pe~~~~~~ 734 (1188)
||+|+|+.
T Consensus 264 ----~esp~~l~ 271 (505)
T TIGR00898 264 ----PESPRWLI 271 (505)
T ss_pred ----CCChHHHH
Confidence 67777653
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-25 Score=267.10 Aligned_cols=166 Identities=25% Similarity=0.291 Sum_probs=137.6
Q ss_pred CCCCCCCcccccccccCcc--------hhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhc
Q psy4738 559 NEPRHLLPEESQQYEFDWD--------ETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAA 630 (1188)
Q Consensus 559 ~~~~~~~a~~~i~~~~~~s--------~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~ 630 (1188)
+........+.+..+++.+ ..+.+++.+.+.+++.++++++|+++||+|||+++..+.+++.++++++++++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 122 (481)
T TIGR00879 43 DTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA 122 (481)
T ss_pred ccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 4333444455555665555 89999999999999999999999999999999999999999999999997654
Q ss_pred c-cchhHHHHHHHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHH---HHhhhcCCCCchHHHH
Q psy4738 631 Y-MGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLT---GLLLKLTNNYWPVVFY 706 (1188)
Q Consensus 631 ~-~~~~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~---g~l~~~~g~gWr~~F~ 706 (1188)
+ .+.+.+++.|+++|++.+...+....++.|++|+++|+++.++++.+..+|..+++.++ +...+..+ ||++|+
T Consensus 123 ~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~--w~~~f~ 200 (481)
T TIGR00879 123 FALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLG--WRIPLG 200 (481)
T ss_pred cccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCcc--HHHHHH
Confidence 2 24457999999999999999999999999999999999999999999999999999999 66555556 999999
Q ss_pred HHHHHHHHHHHHHHhhccCCC
Q psy4738 707 LFGAVAILWFVVWLFIGYSEP 727 (1188)
Q Consensus 707 i~~~~~~~~~~~~~~~~~~~p 727 (1188)
+.++..++..+.. +++||+|
T Consensus 201 ~~~~~~~~~~~~~-~~l~~~~ 220 (481)
T TIGR00879 201 LQLIPAGLLFLGL-FFLPESP 220 (481)
T ss_pred HHHHHHHHHHHHH-hcCCCCh
Confidence 9766655554444 4455443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-24 Score=261.30 Aligned_cols=343 Identities=18% Similarity=0.216 Sum_probs=237.6
Q ss_pred CCCCcccCC---hhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH
Q psy4738 64 NPDNEFDWD---EKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEG 140 (1188)
Q Consensus 64 ~~~~~~~~s---~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~G 140 (1188)
...+|||++ +.+.+++.+++++++.+++++.|+++||+|||+++..+.++.++++++++++ +|++.+++.|+++|
T Consensus 114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~r~l~G 191 (505)
T TIGR00898 114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS--PNYTVFLVFRLLVG 191 (505)
T ss_pred cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHH
Confidence 345789998 8999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhhccchhHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhccc
Q psy4738 141 LGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN 220 (1188)
Q Consensus 141 lg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~ 220 (1188)
++.+...+....++.|++|+++|+++.++...+..+|.++++.+++.+ .+||+.|++.+++.++..+.+ +++||
T Consensus 192 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~~wr~~~~~~~i~~~~~~~~~-~~~~e 265 (505)
T TIGR00898 192 MGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI-----PDWRWLQLAVSLPTFLFFLLS-WFVPE 265 (505)
T ss_pred hhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHH-HhcCC
Confidence 999999999999999999999999999999999999999999888766 249999999998887776665 56677
Q ss_pred CCCCC---CCCCHhHH-----------------------H---------HHHHHHhhhhh----hHHHHHHHHHHHHHHH
Q psy4738 221 DPASH---PYISQREK-----------------------E---------YLADTIGCLAR----NKIGHDWGLFMISADL 261 (1188)
Q Consensus 221 ~p~~~---~~~~~~~~-----------------------~---------~~~~~~~~~~~----~~~~~~~~~~~~~~~l 261 (1188)
+|+.. .+.++.++ + ...+.++.... ......+....+..+.
T Consensus 266 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (505)
T TIGR00898 266 SPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYG 345 (505)
T ss_pred ChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 66410 00000000 0 00000000000 0001111111111221
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcch-HHH
Q psy4738 262 PKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCD-QIL 340 (1188)
Q Consensus 262 p~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~-~~~ 340 (1188)
..+..+.++.+.... .....+..+++.++.+++.||++||+ ...++.+..+++++.....+.. ...
T Consensus 346 ~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~l~dr~grr~----------~~~~~~~~~~~~~l~~~~~~~~~~~~ 412 (505)
T TIGR00898 346 LVLDLGNLGGNIYLD---LFISGLVELPAKLITLLLIDRLGRRY----------TMAASLLLAGVALLLLLFVPVDLYFL 412 (505)
T ss_pred HhccccccCCChHHH---HHHHHHHHHHHHHHHHHHHHHhCCHH----------HHHHHHHHHHHHHHHHHHcCCCchHH
Confidence 122222244454333 33445677788899999999998643 2344444444444444444333 233
Q ss_pred HHHHHHHHHHHHhhhhhHHHHhhcccCc-hhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCccchHHHHHHHHHHHHHH
Q psy4738 341 VVTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAG 419 (1188)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~ 419 (1188)
......++.++.....+.......|..| +.|++++|+.+....+|++++|.+.+ +.+ .+ ...++.+.++..++++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~--~~~~~~~~~~~~~~~~ 488 (505)
T TIGR00898 413 RTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE-KW--LFLPLVLFGGLALLAG 488 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-HH--HhhHHHHHHHHHHHHH
Confidence 3444445555555556666677777766 78999999999999999999999999 433 22 3455666666666666
Q ss_pred HHHhhhhhcccc
Q psy4738 420 WFSDYLVSKNIF 431 (1188)
Q Consensus 420 ~~~~~~~~~~~~ 431 (1188)
+...++++.+.+
T Consensus 489 ~~~~~lpet~~~ 500 (505)
T TIGR00898 489 ILTLFLPETKGV 500 (505)
T ss_pred HHHHcCcCCCCC
Confidence 666666554443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-26 Score=272.20 Aligned_cols=239 Identities=18% Similarity=0.188 Sum_probs=183.3
Q ss_pred CCCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHH
Q psy4738 562 RHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWR 641 (1188)
Q Consensus 562 ~~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R 641 (1188)
......|.+++++|.+.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++++++ +.+.+++.|
T Consensus 13 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 90 (379)
T TIGR00881 13 NFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST--SLWVMAALW 90 (379)
T ss_pred hhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh--hHHHHHHHH
Confidence 344556888999999999999999999999999999999999999999999999999999999999998 667799999
Q ss_pred HHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHH-HHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHH
Q psy4738 642 FFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISS-SLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWL 720 (1188)
Q Consensus 642 ~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~-~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~ 720 (1188)
+++|++.+...|...+++.|++|+++|+++.++.+.+..+|..++| .+++.+.+..+ ||+.|++.+++.++..+..+
T Consensus 91 ~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 168 (379)
T TIGR00881 91 ALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS--WHWVFIVPGIIAIIVSLICF 168 (379)
T ss_pred HHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999 57777777777 99999999988888777776
Q ss_pred hhccCCCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeecCC
Q psy4738 721 FIGYSEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPP 800 (1188)
Q Consensus 721 ~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1188)
+..||+|++++....++.+ .++ .+..+..+ +.+..+.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~-~~~------------~~~~~~~~---~~~~~~~~-------------------------- 206 (379)
T TIGR00881 169 LLLRDSPQSCGLPPAEEMP-NEE------------PDGDAEKK---EEELTKKQ-------------------------- 206 (379)
T ss_pred eeeCCCccccccCccccCc-ccc------------cccccccc---cccccchH--------------------------
Confidence 7776665543211111100 000 00000000 00000000
Q ss_pred CcccccccchhHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhccc
Q psy4738 801 TPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVH 846 (1188)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~ 846 (1188)
..+++.++++.++...+..+.......+...+.|.|+++..|+|+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 252 (379)
T TIGR00881 207 IFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKE 252 (379)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 0123345666666666666776777777888999999988888764
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=256.36 Aligned_cols=158 Identities=16% Similarity=0.276 Sum_probs=145.8
Q ss_pred CcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q psy4738 565 LPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFE 644 (1188)
Q Consensus 565 ~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~ 644 (1188)
...|.+++|+|.++++.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+++.+++++++ +.+.+++.|+++
T Consensus 26 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ 103 (385)
T TIGR00710 26 PAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN--NIETLLVLRFVQ 103 (385)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHH
Confidence 446888999999999999999999999999999999999999999999999999999999999988 567799999999
Q ss_pred HhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q psy4738 645 GLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGY 724 (1188)
Q Consensus 645 Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~ 724 (1188)
|++.+...+....++.|++|+++|+++.++.+....+|..++|.+++.+.+..+ ||+.|++.+++.++..+..++..|
T Consensus 104 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 181 (385)
T TIGR00710 104 AFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS--WHAIFAFLSLAGILLSALIFFILP 181 (385)
T ss_pred HcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999998888 999999998888777666666655
Q ss_pred CC
Q psy4738 725 SE 726 (1188)
Q Consensus 725 ~~ 726 (1188)
|+
T Consensus 182 ~~ 183 (385)
T TIGR00710 182 ET 183 (385)
T ss_pred CC
Confidence 54
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-25 Score=267.27 Aligned_cols=128 Identities=20% Similarity=0.278 Sum_probs=111.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccc------hhHHHHHHHHHHhhcccchhHHHHHHH
Q psy4738 587 SFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMG------PVWLIVWRFFEGLGEGTTFPAANQLLA 660 (1188)
Q Consensus 587 ~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~------~~~l~~~R~l~Gig~g~~~p~~~~~i~ 660 (1188)
+..++..+++++.|+++||+|||+++..++++++++++++++++|+. .+.++++|+++|++.|+.+|.+..++.
T Consensus 72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~ 151 (438)
T PRK09952 72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAV 151 (438)
T ss_pred HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence 44566778999999999999999999999999999999999999543 125889999999999999999999999
Q ss_pred hccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcC------CCCchHHHHHHHHHHHH
Q psy4738 661 AWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLT------NNYWPVVFYLFGAVAIL 714 (1188)
Q Consensus 661 ~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~------g~gWr~~F~i~~~~~~~ 714 (1188)
|++|+++||+..+..+.+..+|.++++.+...+.+.. ..|||++|++.+++.++
T Consensus 152 e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 152 ESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred HhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence 9999999999999999999999999988887776421 12499999998877554
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.5e-25 Score=260.22 Aligned_cols=354 Identities=14% Similarity=0.117 Sum_probs=245.2
Q ss_pred cccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhh---hhcccchhHHHHHHHHH
Q psy4738 568 ESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTP---MAAYMGPVWLIVWRFFE 644 (1188)
Q Consensus 568 ~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a---~a~~~~~~~l~~~R~l~ 644 (1188)
+.+.+|+|.|+++.+++.+.|.+++.+++++.|++.||+||||++..+.++++++++++. ... .+.+.+++.|+++
T Consensus 37 ~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~i~ 115 (402)
T TIGR00897 37 SPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGH-ANYPLILLFYGIR 115 (402)
T ss_pred HHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccC-ccHHHHHHHHHHH
Confidence 445578999999999999999999999999999999999999999999999999987663 222 2567789999999
Q ss_pred HhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHH-HHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhc
Q psy4738 645 GLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGT-VISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIG 723 (1188)
Q Consensus 645 Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~-~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~ 723 (1188)
|++.+...+.....+.+++|++||+++.|+.+++.++|. +++|.+++.+.+..| |+..+|.......+..+..++..
T Consensus 116 G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~ 193 (402)
T TIGR00897 116 GLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG--EMNTLWSALAFVLTGGVIALFSN 193 (402)
T ss_pred HcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--hHHHHHHHHHHHHHHHHHHHhcc
Confidence 999998888889999999999999999999999999997 689999999888777 77776665544444444444555
Q ss_pred cCCCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeecCCCcc
Q psy4738 724 YSEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTPW 803 (1188)
Q Consensus 724 ~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (1188)
+|++|+++. ++++...+ . .+ .+
T Consensus 194 ~~~~~~~~~---~~~~~~~~-~------------------------~~------------------------------~~ 215 (402)
T TIGR00897 194 KDIFTPQHM---QTREKFSE-L------------------------GK------------------------------AA 215 (402)
T ss_pred CCCCCcccc---cCCcchhh-H------------------------HH------------------------------HH
Confidence 554332110 00000000 0 00 02
Q ss_pred cccccchhHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhcccccccccchhHHHhhhccCcchhHHHHHHHHhhccccc
Q psy4738 804 KEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSATSMGPAVGIILASYSGCNKVLAVMFFAIGMGFMGF 883 (1188)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 883 (1188)
++.+++|.++...+..+....+.++...+.|.|+++ .|+|+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~------------------------------------- 257 (402)
T TIGR00897 216 TILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTS------------------------------------- 257 (402)
T ss_pred HHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChh-------------------------------------
Confidence 234556666666666677777888888899999865 677754
Q ss_pred ccCcccccccCCChhhHHHHHHHHhcccccccccccccccccccccccccccCCCCCCCcchhHHHHhhhhhhcccCCCC
Q psy4738 884 YYPSIRINSLDLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHGKQARYHWTNRAPYSFNFPLFKYVLRKHADKYNRFQDL 963 (1188)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1188)
T Consensus 258 -------------------------------------------------------------------------------- 257 (402)
T TIGR00897 258 -------------------------------------------------------------------------------- 257 (402)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCchhhhcccchhhHHhhHhhcccchhhhhhcccchhhhccCccchhhHHHHHHHHhhhchhhHHHHhhccchhHHHHH
Q psy4738 964 PPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASNGLLSALPFLFMWIFSQGAGCLSDFIVERQWFSMTLTRK 1043 (1188)
Q Consensus 964 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~~~~~~i~~~~~g~lsd~~~~r~~~~~~~~r~ 1043 (1188)
+.+.+.....+++.++.+..|+++||+++|+
T Consensus 258 ----------------------------------------~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~--------- 288 (402)
T TIGR00897 258 ----------------------------------------EWLQIWGTFFFTNIVFNVIFGIVGDKLGWMN--------- 288 (402)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcchh---------
Confidence 2233345556888999999999999996543
Q ss_pred HHHHhhhhhhHH---HHHhhh-ccCCchHHH-HHHHHHHhhhhccccccccccccCCCCcchhHHHHHhhhhhhhhhhhh
Q psy4738 1044 IFATAASMGPAV---GIILAS-YSGCNKVLA-VMFFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGLGAVSGIFS 1118 (1188)
Q Consensus 1044 ~~~~~~~~~~~~---~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 1118 (1188)
.....+.....+ .+.... ....+.... ...+..+.+..+. .+ ......+..|++||++.|+.|...++++.++
T Consensus 289 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~-~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~g 366 (402)
T TIGR00897 289 TVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGY-VP-LAAVFPTLAPKHKGAAMSVLNLSAGLSAFLA 366 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH-HH-HHHHHHhhCcchhHHHHHHHHHHHHHHHHHH
Confidence 111111111112 111111 111222222 2222233222222 22 2334456778899999999999999999999
Q ss_pred hhhheeecCCCccchhHHHHHHHHHHHHHhhhhhhe
Q psy4738 1119 APLIGIMTPNSTMSEWRLVFWLTFIILAVTNLFYLV 1154 (1188)
Q Consensus 1119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1154 (1188)
|.+.|.+.+..+ +...+++.+++.+++.++..+
T Consensus 367 p~i~g~l~~~~g---~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 367 PAIAVLFIGFFG---AIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHhhcc---hHHHHHHHHHHHHHHHHHHHH
Confidence 999999988753 888888888777776665544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-24 Score=248.24 Aligned_cols=321 Identities=16% Similarity=0.133 Sum_probs=230.2
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccc
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTT 146 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~ 146 (1188)
+|+|+|+++.+++.+.+.+++.+++++.|+++||+|||+++..+.++..++.+++ .+ ++++.+++.|+++|++.+..
T Consensus 28 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~--~~~~~l~~~~~~~g~g~~~~ 104 (355)
T TIGR00896 28 SALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA--PGTALLFAGTALIGVGIAII 104 (355)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh--ccHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999888888877 66 88999999999999999998
Q ss_pred hhHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCC
Q psy4738 147 FPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHP 226 (1188)
Q Consensus 147 ~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~ 226 (1188)
.+....++.|++| +||++++++...+..+|..+++.+++.+.+..+.+||+.|++.+.+.++....+....++++++++
T Consensus 105 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (355)
T TIGR00896 105 NVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALLAWIPQVRRRVAANQ 183 (355)
T ss_pred hccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCCCC
Confidence 8888889999996 689999999999999999999999999987622249999988776554433322211111111111
Q ss_pred CCCH-hHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy4738 227 YISQ-REKEYLAD-TIGCLARNKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSK 304 (1188)
Q Consensus 227 ~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r 304 (1188)
...+ ..++..++ ...............++....++|.|+++ .|+|..+.+...+...++.+++++..|++.||+++|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~ 262 (355)
T TIGR00896 184 TTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQ 262 (355)
T ss_pred CCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccc
Confidence 1000 00111110 00000112233345667788899999987 699999999999999999999999999999999653
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhc-ccC-chhhHHHHHHHHHHH
Q psy4738 305 DIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNAL-DLS-PNYAGTLMAIVNGIG 382 (1188)
Q Consensus 305 ~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-p~~~g~~~g~~~~~~ 382 (1188)
+ ....++.....++.+......++.... . ..+...+.+...+....... +.. +++++...++.+..+
T Consensus 263 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 331 (355)
T TIGR00896 263 R---------GIVAVLAVLQLVGLCGLLFAPMHGLWA-W-ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIG 331 (355)
T ss_pred h---------HHHHHHHHHHHHHHHHHHHhhhhHHHH-H-HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 2 223333333333433333333222211 1 22233444444554444333 333 467899999999999
Q ss_pred hhhhhhhhHHHHhhccCCCcc
Q psy4738 383 AISGIISPYLIGILVPNNGVL 403 (1188)
Q Consensus 383 ~lgg~i~p~l~g~l~~~~G~~ 403 (1188)
+++++++|.+.|.+.|..|.+
T Consensus 332 ~~~~~~gp~~~G~l~~~~g~~ 352 (355)
T TIGR00896 332 YLLAALGPLFVGVLHDISGNW 352 (355)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999988753
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.1e-25 Score=263.52 Aligned_cols=164 Identities=14% Similarity=0.090 Sum_probs=132.5
Q ss_pred HHHHHHHhhhhheeeccccccccCCCCCCCcccccccccCcchhhhhHHH-HHH--HHHH---HHHHhhhhhhhhhhCCh
Q psy4738 536 SFGVIMITNVAYVFMGSGKIQSWNEPRHLLPEESQQYEFDWDETTQGLIL-GSF--YWGY---VIMHIPGGLLAQKFGGK 609 (1188)
Q Consensus 536 ~a~i~l~~~l~~l~~~~~~~q~w~~~~~~~a~~~i~~~~~~s~~~~~~i~-s~~--~l~~---~~~~~~~G~L~Dr~Grr 609 (1188)
.....+....++. |+.......|.+++|++.++.+.++.. +.+ ..++ .+++++.|+++||+|||
T Consensus 17 ~~~~~~~~~~~~~----------d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr 86 (434)
T PRK15075 17 ILRVTSGNFLEMF----------DFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRR 86 (434)
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchH
Confidence 3444555555665 555566777999999999888776543 322 2222 46889999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhhcccch------hHHHHHHHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHH
Q psy4738 610 HTLGFGILSTAIFTILTPMAAYMGP------VWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGT 683 (1188)
Q Consensus 610 ~~l~~~~~~~~i~~ll~a~a~~~~~------~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~ 683 (1188)
|++..+.++++++++++++++++.. ..++++|+++|++.+...|....+++|++|+++||+..++...+..+|.
T Consensus 87 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~ 166 (434)
T PRK15075 87 KGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAV 166 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHH
Confidence 9999999999999999999985431 1479999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh--------hcCCCCchHHHHHHHHH
Q psy4738 684 VISSSLTGLLL--------KLTNNYWPVVFYLFGAV 711 (1188)
Q Consensus 684 ~~g~~l~g~l~--------~~~g~gWr~~F~i~~~~ 711 (1188)
.+++.+++.+. +..| ||++|++..+.
T Consensus 167 ~~g~~~g~~l~~~~~~~~~~~~g--Wr~~f~~~~~~ 200 (434)
T PRK15075 167 VFAALLGYLLNQWLSPAQMAEWG--WRIPFLIGCLI 200 (434)
T ss_pred HHHHHHHHHHHHhCCHHHHhccc--hHHHHHHHHHH
Confidence 88888888774 3345 99999986543
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=266.30 Aligned_cols=144 Identities=17% Similarity=0.293 Sum_probs=134.3
Q ss_pred cccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH
Q psy4738 566 PEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEG 645 (1188)
Q Consensus 566 a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~G 645 (1188)
..|.+.+|+|+|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++++++++++ +.+.+++.|+++|
T Consensus 42 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G 119 (496)
T PRK03893 42 VLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAP--GYWTLFIARLVIG 119 (496)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999988 5677999999999
Q ss_pred hhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHH
Q psy4738 646 LGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAI 713 (1188)
Q Consensus 646 ig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~ 713 (1188)
++.++.++....++.|++|+++|+++.++...+..+|..++|.+++.+.+..+ ||+.|++..+..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--w~~~f~~~~~~~~ 185 (496)
T PRK03893 120 MGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG--WRALFFIGILPII 185 (496)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887 9999987544433
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-24 Score=250.90 Aligned_cols=343 Identities=20% Similarity=0.244 Sum_probs=239.0
Q ss_pred HHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcc-cCChhhHHHHHH--HHHH---HHHHhHhhH
Q psy4738 21 ANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEF-DWDEKTQGLILS--AFYW---GYVIMHIPG 94 (1188)
Q Consensus 21 ~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~-~~s~~~~g~l~s--~~~l---g~~i~~~~~ 94 (1188)
+++++|+.+++...+.+.+ +.+ +.++++.+.+.+ .|.. +..+++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 55 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFH---------------------------TFFPPSGDPLVALLATFATFAAGFLARPLGAIVF 55 (394)
T ss_pred chhHHHHHHHHHHHHHHHH---------------------------HhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHh
Confidence 5679999999999999983 222 345556655444 3333 334689999
Q ss_pred HHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHH--------HHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhH
Q psy4738 95 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSAN--------WLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI 166 (1188)
Q Consensus 95 G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~--------~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~ 166 (1188)
|+++||+|||+++..+.++.++++++++++ ++++ .+++.|+++|++.+...+....++.|++|+++|++.
T Consensus 56 G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~ 133 (394)
T TIGR00883 56 GHFGDRIGRKKTLVITLLMMGIGTLLIGLL--PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFY 133 (394)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHhhC--CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHH
Confidence 999999999999999999999999999998 7765 488999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc------cCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCC--CCHhHHHHHHH
Q psy4738 167 GSFVFAGNQIGTVFSSFLSGFLLKY------TDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPY--ISQREKEYLAD 238 (1188)
Q Consensus 167 ~gi~~~~~~lG~~ig~~lgg~l~~~------~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~--~~~~~~~~~~~ 238 (1188)
.++...+..+|.++++++++.+... ...|||++|++.+++.++.... ....+|+|+.++. .++++++...+
T Consensus 134 ~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (394)
T TIGR00883 134 GSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL-RRNLEETPVFEKAQEKHKKKRGPIRE 212 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH-HHhcCCChhHHHHHhccccccCCHHH
Confidence 9999999999999999988776531 1268999999877665544333 2333444322111 00111111111
Q ss_pred HHhhhh-------hhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhH
Q psy4738 239 TIGCLA-------RNKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTV 311 (1188)
Q Consensus 239 ~~~~~~-------~~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~ 311 (1188)
..++.. ...+......+....++|.|+++.+|.+..+.+.......+...++.++.++++||+++|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~------ 286 (394)
T TIGR00883 213 TLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRP------ 286 (394)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH------
Confidence 111111 1333444556677889999999889999999999999999999999999999999999753
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhh-cchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCc-hhhHHHHHHH-HHHHhhhhh
Q psy4738 312 IRKIFTTIASVGPASGV-ILASYA-GCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGTLMAIV-NGIGAISGI 387 (1188)
Q Consensus 312 ~r~~~~~i~~~~~~~~l-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~-~~~~~lgg~ 387 (1188)
.....+.......+ ...... ..+...............+...+.......|..| +.|+++.++. +....+++.
T Consensus 287 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~ 363 (394)
T TIGR00883 287 ---VLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGG 363 (394)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhh
Confidence 22222222222221 111121 2233333333333344444445555566666555 7899999985 455567888
Q ss_pred hhhHHHHhhccCCCc
Q psy4738 388 ISPYLIGILVPNNGV 402 (1188)
Q Consensus 388 i~p~l~g~l~~~~G~ 402 (1188)
++|.+.|.+.|..|.
T Consensus 364 ~~p~~~g~l~~~~g~ 378 (394)
T TIGR00883 364 FAPYIAAALVAMTGD 378 (394)
T ss_pred HHHHHHHHHHHHcCc
Confidence 999999999999874
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-24 Score=252.56 Aligned_cols=158 Identities=22% Similarity=0.322 Sum_probs=145.5
Q ss_pred CcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q psy4738 565 LPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFE 644 (1188)
Q Consensus 565 ~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~ 644 (1188)
+..|.+.+|+|+++++.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++++++ +.+.+++.|+++
T Consensus 12 p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~ 89 (377)
T PRK11102 12 PALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ--TIDQLIYMRFLH 89 (377)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999999999999999999999999999988 567799999999
Q ss_pred HhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q psy4738 645 GLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGY 724 (1188)
Q Consensus 645 Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~ 724 (1188)
|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+.+..+ ||+.|++.+.+.++..+...+..|
T Consensus 90 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 167 (377)
T PRK11102 90 GLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS--WHAIFWVLALAAILAAALVFFFIP 167 (377)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999998877 999999999888877666656655
Q ss_pred CC
Q psy4738 725 SE 726 (1188)
Q Consensus 725 ~~ 726 (1188)
|+
T Consensus 168 ~~ 169 (377)
T PRK11102 168 ET 169 (377)
T ss_pred cc
Confidence 54
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-26 Score=255.27 Aligned_cols=186 Identities=17% Similarity=0.214 Sum_probs=170.4
Q ss_pred hhHHHHHHHHHHHHHhhhhheeeccccccccCCCCCCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhC
Q psy4738 528 EWRLVFWISFGVIMITNVAYVFMGSGKIQSWNEPRHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFG 607 (1188)
Q Consensus 528 ~wr~vf~i~a~i~l~~~l~~l~~~~~~~q~w~~~~~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~G 607 (1188)
.+....+.+..+++.+.+.|. |+....-..+++++.+|+++++.|++++.|.+.+.+..|+.|.|+|||.
T Consensus 27 ~~~~~~~~l~il~~vnlmny~----------Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryN 96 (493)
T KOG1330|consen 27 SMKSPTLTLVILCLVNLMNYA----------DRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYN 96 (493)
T ss_pred ccccchHHHHHHHHHHHHHHh----------hhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcC
Confidence 344444566777888888887 7777666779999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHH
Q psy4738 608 GKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISS 687 (1188)
Q Consensus 608 rr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~ 687 (1188)
||+++.+|..+|+++.+.++++. .+||+.++|.+.|+|++...|.++.+++|.||.++|++++++++....+|..+|.
T Consensus 97 R~~v~~vG~~iW~~Av~~~~fs~--~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~ 174 (493)
T KOG1330|consen 97 RKRVIAVGIFIWTLAVFASGFSN--HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGY 174 (493)
T ss_pred cceEEeeHHHHHHHHHHHHHHHH--HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeE
Confidence 99999999999999999999997 8899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhccCC
Q psy4738 688 SLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSE 726 (1188)
Q Consensus 688 ~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~~~ 726 (1188)
+.|..+.+..+. |||.|+..+++++++.++.+++.+|+
T Consensus 175 vvgs~va~~~~~-Wr~af~~~avl~vi~~~L~~~f~~eP 212 (493)
T KOG1330|consen 175 VVGSVVASLTFW-WRWAFRGSAVLGVIVGLLVFLFVREP 212 (493)
T ss_pred EeeeeeccCccc-eEEEEEeehHHHHHHHHHHHhhccCc
Confidence 999999987654 99999999999999999888886554
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=243.82 Aligned_cols=360 Identities=19% Similarity=0.186 Sum_probs=278.5
Q ss_pred ccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcc-cchhHHHHHHHHHH
Q psy4738 567 EESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAY-MGPVWLIVWRFFEG 645 (1188)
Q Consensus 567 ~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~-~~~~~l~~~R~l~G 645 (1188)
.+.+++|+++|++|.+++.+.-.+..++.-++.|.+.||||.|++...++++..+-.+..+++.. .+.|++++++.+.|
T Consensus 37 ~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G 116 (417)
T COG2223 37 GVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLG 116 (417)
T ss_pred HhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHh
Confidence 36677999999999999999999999999999999999999999999999999999999998862 23468999999999
Q ss_pred hhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-CchHHHHHHHHHHHHHHHHHHhhcc
Q psy4738 646 LGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNN-YWPVVFYLFGAVAILWFVVWLFIGY 724 (1188)
Q Consensus 646 ig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~-gWr~~F~i~~~~~~~~~~~~~~~~~ 724 (1188)
++ |+.+...+.++++|||||++|.++|+.. ..++|..+...++..++...+. .||.+-.+..++.++..+..++...
T Consensus 117 ~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 117 LA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred cc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 98 6678899999999999999999999999 8888988888888888776542 3999999999998888888888888
Q ss_pred CCCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeecCCCccc
Q psy4738 725 SEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTPWK 804 (1188)
Q Consensus 725 ~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1188)
|.||.....++.+. + ..|
T Consensus 195 d~p~~r~~~~~~~~----~----------------------------------------------------------~~~ 212 (417)
T COG2223 195 DVPEHRASVKPQLP----A----------------------------------------------------------QLK 212 (417)
T ss_pred CChhhhccccccch----h----------------------------------------------------------HHH
Confidence 88875221111100 0 122
Q ss_pred ccccchhHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhcccccccccchhHHHhhhccCcchhHHHHHHHHhhcccccc
Q psy4738 805 EMATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSATSMGPAVGIILASYSGCNKVLAVMFFAIGMGFMGFY 884 (1188)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 884 (1188)
...++++.|...+..+..+.+..++..++|.|++++++.|+.
T Consensus 213 ~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~-------------------------------------- 254 (417)
T COG2223 213 AVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPV-------------------------------------- 254 (417)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh--------------------------------------
Confidence 344566677777778888888899999999999999999875
Q ss_pred cCcccccccCCChhhHHHHHHHHhcccccccccccccccccccccccccccCCCCCCCcchhHHHHhhhhhhcccCCCCC
Q psy4738 885 YPSIRINSLDLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHGKQARYHWTNRAPYSFNFPLFKYVLRKHADKYNRFQDLP 964 (1188)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 964 (1188)
T Consensus 255 -------------------------------------------------------------------------------- 254 (417)
T COG2223 255 -------------------------------------------------------------------------------- 254 (417)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCchhhhcccchhhHHhhHhhcccchhhhhhcccchhhhccCccchhhHHHHHHHHhhhchhhHHHHhhccchhHHHHHH
Q psy4738 965 PTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASNGLLSALPFLFMWIFSQGAGCLSDFIVERQWFSMTLTRKI 1044 (1188)
Q Consensus 965 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~~~~~~i~~~~~g~lsd~~~~r~~~~~~~~r~~ 1044 (1188)
++|.+.....+.+.+.-+++|++|||++.++
T Consensus 255 ---------------------------------------~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~r---------- 285 (417)
T COG2223 255 ---------------------------------------TAGLIAFLFPLIGALARPLGGWLSDRIGGRR---------- 285 (417)
T ss_pred ---------------------------------------hHHHHHHHHHHHHHHHHhccchhhhhccchh----------
Confidence 3445566666888889999999999995543
Q ss_pred HHHhhhhhhHHHHHhhhccC------CchHHHHHHHHHHhhhhccccccccccccCCCCcchhHHHHHhhhhhhhhhhhh
Q psy4738 1045 FATAASMGPAVGIILASYSG------CNKVLAVMFFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGLGAVSGIFS 1118 (1188)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 1118 (1188)
.....+..++++........ .+....+..+.....+.+..+....-.+....|++.|.+.|+....+.+|+.+-
T Consensus 286 v~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~l 365 (417)
T COG2223 286 VTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFL 365 (417)
T ss_pred HHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhhhhHHHHHHHHhccccccch
Confidence 23333444444444443332 223333443444444555555555555555678899999999999999999999
Q ss_pred hhhheeecCCCccchhHHHHHHHHHHHHHhhhhhheeccCc
Q psy4738 1119 APLIGIMTPNSTMSEWRLVFWLTFIILAVTNLFYLVFGSAE 1159 (1188)
Q Consensus 1119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1159 (1188)
|...|...+..+ .++..|++.....+++.++......++
T Consensus 366 p~~~g~~~~~tg--~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 366 PLAFGVSLDLTG--SYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred hHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999998887763 589999999988888887766654443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-25 Score=256.18 Aligned_cols=158 Identities=25% Similarity=0.509 Sum_probs=141.3
Q ss_pred ccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhc
Q psy4738 569 SQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGE 648 (1188)
Q Consensus 569 ~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~ 648 (1188)
.+.+|+|.|+++.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++.+++ +.+.+++.|+++|++.
T Consensus 22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~ 99 (352)
T PF07690_consen 22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFAS--NFWLLLIARFLLGIGS 99 (352)
T ss_dssp HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhh--hHHHHhhhcccccccc
Confidence 67789999999999999999999999999999999999999999999999999977777766 5567999999999999
Q ss_pred ccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4738 649 GTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSEPG 728 (1188)
Q Consensus 649 g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~~~pe 728 (1188)
+...|....++.|++|++||++++++.+....+|.+++|.+++.+.+..+ ||+.|++.+++.++..++...+.+++|+
T Consensus 100 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~--~~~~~~~~~~~~~~~~il~~~~~~~~~~ 177 (352)
T PF07690_consen 100 GFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG--WRWAFLISAILSLIAAILFILFLPEPPP 177 (352)
T ss_dssp HHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH--HCCHHHHHHHHHHHHHHHHHCCC---ST
T ss_pred ccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc--cccccccccchhhhhhhhHhhhhhhccc
Confidence 99999999999999999999999999999999999999999999998888 9999999999999887765555555444
Q ss_pred CC
Q psy4738 729 SN 730 (1188)
Q Consensus 729 ~~ 730 (1188)
++
T Consensus 178 ~~ 179 (352)
T PF07690_consen 178 PR 179 (352)
T ss_dssp TT
T ss_pred cc
Confidence 33
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.2e-23 Score=242.32 Aligned_cols=319 Identities=13% Similarity=0.089 Sum_probs=224.8
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccc
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTT 146 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~ 146 (1188)
+++|+|..+.|++.+.+.+++.+.+++.|+++||+|||+++..+.++.+++.++.+++ ++++.++++|.+.|.+.+..
T Consensus 36 ~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~ 113 (395)
T PRK10054 36 RQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV--NNVTLVVLFFALINCAYSVF 113 (395)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999998 89999999999999888888
Q ss_pred hhHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCC
Q psy4738 147 FPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHP 226 (1188)
Q Consensus 147 ~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~ 226 (1188)
.|...++..|.+|+++|++++++......+|.+++|++++++.+ .|||.+|++.+++.++..+...+..++++++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~---~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~ 190 (395)
T PRK10054 114 STVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM---QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIA 190 (395)
T ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCcHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 89999999999999999999999999999999999999999874 589999999888877765555554443322211
Q ss_pred CCCHhHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 227 YISQREKEYLADTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVM--KFSIAKNGVLSSLPFLLMWLTAIVAGWFSD 299 (1188)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~--g~s~~~~g~l~~~~~l~~~ig~~~~g~lsd 299 (1188)
..++++.+ ..+..+++.. ..++..+.......+.+.|+.+.. +.+....+.......+.........+++.|
T Consensus 191 ~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~ 269 (395)
T PRK10054 191 TETGSVWS-PSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLN 269 (395)
T ss_pred cchhhhhh-hhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHc
Confidence 11111111 1111111111 223333334445557777776543 344555676766666666667778888888
Q ss_pred HHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCc-hhhHHHHHHH
Q psy4738 300 YLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGTLMAIV 378 (1188)
Q Consensus 300 r~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~ 378 (1188)
|.++|+ ....+.......+.......++.....+...+...+.+...|.......+..| +.+|+..+..
T Consensus 270 ~~~~~~----------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~ 339 (395)
T PRK10054 270 AANIRP----------LMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQ 339 (395)
T ss_pred cCCchh----------HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHH
Confidence 887543 22333333333333333322333322222333333333444555555555555 7889988865
Q ss_pred HHHHhhhhhhhhHHHHhhccCCCc
Q psy4738 379 NGIGAISGIISPYLIGILVPNNGV 402 (1188)
Q Consensus 379 ~~~~~lgg~i~p~l~g~l~~~~G~ 402 (1188)
+ ...+|..++|.+.|.+.|..|.
T Consensus 340 ~-~~~~G~~~Gp~~~G~l~~~~g~ 362 (395)
T PRK10054 340 S-LGWLGAAINPLVSGVILTTLPP 362 (395)
T ss_pred H-HHHHHHHHHHHHHHHHHHHcCh
Confidence 5 6778999999999999999864
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.8e-24 Score=251.85 Aligned_cols=154 Identities=18% Similarity=0.237 Sum_probs=141.4
Q ss_pred CcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q psy4738 565 LPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFE 644 (1188)
Q Consensus 565 ~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~ 644 (1188)
+..|.+++|+|.++++.+++.+.+.+++.++++++|+++||+|||+++..+..+.+++.+++++++ +.+++++.|+++
T Consensus 27 p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~ 104 (401)
T PRK11043 27 PAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE--SAAQLLVLRFVQ 104 (401)
T ss_pred hhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHH
Confidence 345778899999999999999999999999999999999999999999999999999999999988 667799999999
Q ss_pred HhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhh
Q psy4738 645 GLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFI 722 (1188)
Q Consensus 645 Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~ 722 (1188)
|++.+...+...+++.|++|++++++..+.......+|..++|.+++.+.+..+ ||+.|++.+++.++..+..+++
T Consensus 105 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 105 AVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG--WQAIFATLFAITLLLILPTLRL 180 (401)
T ss_pred HhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHHHHHc
Confidence 999998889889999999999999999999999999999999999999998888 9999999988888776665554
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.9e-24 Score=249.93 Aligned_cols=155 Identities=19% Similarity=0.071 Sum_probs=133.9
Q ss_pred cccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHH-HHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhc
Q psy4738 570 QQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLG-FGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGE 648 (1188)
Q Consensus 570 i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~-~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~ 648 (1188)
+++++|.|+++.+++.+.+.+...+.+++.|+++||+||||.+. .+.....++.+++++++ +++.+++.|+++|.+.
T Consensus 24 l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~ 101 (375)
T TIGR00899 24 LSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNR--NYFLLLVLGVLLSSFA 101 (375)
T ss_pred HHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhhh
Confidence 57889999999999999999999999999999999999988765 45666677788888888 6677999999999999
Q ss_pred ccchhHHHHHHHhccCCCcchhH--HHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhccCC
Q psy4738 649 GTTFPAANQLLAAWIPKTERGKV--GAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSE 726 (1188)
Q Consensus 649 g~~~p~~~~~i~~~~~~~~rg~~--~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~~~ 726 (1188)
+...|...+++.|+.|+++|++. .+....+.++|.++||.+++.+.+..+ ||+.|++.+++.++..+..++.+||.
T Consensus 102 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T TIGR00899 102 STANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG--FTVMFLTAALAFVLCGVLVWLFLPSY 179 (375)
T ss_pred hhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999988877755 688888899999999999999998877 99999999998877776666666665
Q ss_pred CC
Q psy4738 727 PG 728 (1188)
Q Consensus 727 pe 728 (1188)
|+
T Consensus 180 ~~ 181 (375)
T TIGR00899 180 PR 181 (375)
T ss_pred cc
Confidence 43
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=247.20 Aligned_cols=158 Identities=15% Similarity=0.183 Sum_probs=143.2
Q ss_pred CcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q psy4738 565 LPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFE 644 (1188)
Q Consensus 565 ~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~ 644 (1188)
+..|.+.+|+|.|+++.+++.+.+.+++.+++++.|+++||+|||+++..+..+..++.+++.+++ +.+.+++.|+++
T Consensus 29 p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 106 (394)
T PRK11652 29 PAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAH--SLTVLIAASAIQ 106 (394)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHH
Confidence 345788899999999999999999999999999999999999999999999999999999999988 567799999999
Q ss_pred HhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q psy4738 645 GLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGY 724 (1188)
Q Consensus 645 Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~ 724 (1188)
|++.+...+....+..|++++++|+++.++++.+..+|..++|.+++.+.+..+ ||+.|++.++..++..+...+..|
T Consensus 107 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~ 184 (394)
T PRK11652 107 GLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG--WRACYLFLLLLGAGVTFSMARWMP 184 (394)
T ss_pred HhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999889999999999999999999999999999999999999999998777 999999998887766655555555
Q ss_pred CC
Q psy4738 725 SE 726 (1188)
Q Consensus 725 ~~ 726 (1188)
|+
T Consensus 185 ~~ 186 (394)
T PRK11652 185 ET 186 (394)
T ss_pred cc
Confidence 54
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.6e-24 Score=251.76 Aligned_cols=145 Identities=18% Similarity=0.214 Sum_probs=130.1
Q ss_pred cccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhc---c---cchhHHHHHHHH
Q psy4738 570 QQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAA---Y---MGPVWLIVWRFF 643 (1188)
Q Consensus 570 i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~---~---~~~~~l~~~R~l 643 (1188)
+++++|.|+.+.+++.+.+.+++.+++++.|+++||+||||++..+.++++++++.++++. + .+.+++++.|++
T Consensus 42 i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 121 (399)
T PRK05122 42 VHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLL 121 (399)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999998888776542 1 135578999999
Q ss_pred HHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH
Q psy4738 644 EGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWF 716 (1188)
Q Consensus 644 ~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~ 716 (1188)
+|++.+...+....++.|++|+|+|+++.++.+.+..+|.++|+.+++.+.+..+ ||+.|++..++.++..
T Consensus 122 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g--~~~~~~~~~~~~~~~~ 192 (399)
T PRK05122 122 LGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGG--LAGLGLLIMLLALLGL 192 (399)
T ss_pred HHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888 9999988776654433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=248.12 Aligned_cols=157 Identities=12% Similarity=0.116 Sum_probs=131.1
Q ss_pred ccccc-ccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhh-----cccchhHHHHHH
Q psy4738 568 ESQQY-EFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMA-----AYMGPVWLIVWR 641 (1188)
Q Consensus 568 ~~i~~-~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a-----~~~~~~~l~~~R 641 (1188)
+.+.+ |+|+|++|.+++.+++.+++++++++.|++.||+|+|+++.++++++++.++..+++ + +++++++.|
T Consensus 58 ~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~--s~~~lli~r 135 (462)
T PRK15034 58 VNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNT--PFGIFIVIA 135 (462)
T ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCC--CHHHHHHHH
Confidence 44444 899999999999999999999999999999999999999999999999999999987 5 678899999
Q ss_pred HHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh-----hcCC-----------CCchHHH
Q psy4738 642 FFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLL-----KLTN-----------NYWPVVF 705 (1188)
Q Consensus 642 ~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~-----~~~g-----------~gWr~~F 705 (1188)
++.|++ ++.++.....+++|+|++|||+++|+.....++|..+++.+...+. +..| .+||.++
T Consensus 136 ~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~ 214 (462)
T PRK15034 136 LLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAA 214 (462)
T ss_pred HHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHH
Confidence 999998 7799999999999999999999999997666666666555554433 2111 1389999
Q ss_pred HHHHHHHHHHHHHHHhhccCCC
Q psy4738 706 YLFGAVAILWFVVWLFIGYSEP 727 (1188)
Q Consensus 706 ~i~~~~~~~~~~~~~~~~~~~p 727 (1188)
++..++.++..++.++..+|.|
T Consensus 215 ~~~~~~~iv~~i~~~~~~~~~~ 236 (462)
T PRK15034 215 WIWVPLLAIATIAAWSGMNDIA 236 (462)
T ss_pred HHHHHHHHHHHHHHHHhCCCcc
Confidence 9988888877777666655543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=249.81 Aligned_cols=151 Identities=14% Similarity=0.131 Sum_probs=131.6
Q ss_pred cccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhh
Q psy4738 568 ESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLG 647 (1188)
Q Consensus 568 ~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig 647 (1188)
+...+|++.++.+.+|+.+.|.+++++++++.|+++||+||||++..+.++++++++++++++ + .++.|+++|++
T Consensus 27 ~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~--~---~~~~r~l~G~~ 101 (393)
T PRK11195 27 IALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI--H---PLLAYGLVGIG 101 (393)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH--H---HHHHHHHHHHH
Confidence 445678899999999999999999999999999999999999999999999999999888776 3 27899999999
Q ss_pred cccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4738 648 EGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSEP 727 (1188)
Q Consensus 648 ~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~~~p 727 (1188)
.+...|+..+++.|++|+|||+++.|+.+....+|.++||.++|.+.+. . |+..|++.+...++..+ ..+.+||+|
T Consensus 102 ~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~--~~~~~~i~~~~~~~~~~-~~~~l~~~~ 177 (393)
T PRK11195 102 AAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-H--AEAALAVCALIYLLAAL-FNLFIPRLG 177 (393)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHH-HHhcCCCCc
Confidence 9999999999999999999999999999999999999999999999884 3 88888777665544433 334555544
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-22 Score=241.81 Aligned_cols=367 Identities=15% Similarity=0.139 Sum_probs=251.6
Q ss_pred HHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhHhhHH
Q psy4738 16 GFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGG 95 (1188)
Q Consensus 16 l~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~~~~G 95 (1188)
+++.++...+.....+..+|... ++.|.|.++.+.. +...+.+ +.++++|
T Consensus 17 ~~~l~~~~gl~~~~~~~~l~~~l----------------------------~~~g~~~~~ig~~-~~~~~~~-~~~~l~g 66 (491)
T PRK11010 17 LLILGFASGLPLALTSGTLQAWM----------------------------TVENIDLKTIGFF-SLVGQAY-VFKFLWS 66 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------------------------HhCCCCHHHHHHH-HHHHHHH-HHHHHHH
Confidence 34444455555567777778777 5778999999986 6666665 5899999
Q ss_pred Hhhccc-----CchHH-HHHHHHHHHHHHHHHHHhh-hccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHH
Q psy4738 96 LLAQKF-----GGKHT-LGFGILSTAIFTLLTPFAA-RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS 168 (1188)
Q Consensus 96 ~LaDr~-----Grk~v-l~~~lll~~v~sll~a~a~-~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~g 168 (1188)
+++||+ |||+. +..+.+..+++..++++.. .++++.+.+.|+++|++.+...+...+++.||+|+|||+++.+
T Consensus 67 pl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~ 146 (491)
T PRK11010 67 PLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAA 146 (491)
T ss_pred HHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHH
Confidence 999999 99885 6678787777877777752 2578899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-ccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCH-hH--HHHHHHHHhhhh
Q psy4738 169 FVFAGNQIGTVFSSFLSGFLLK-YTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQ-RE--KEYLADTIGCLA 244 (1188)
Q Consensus 169 i~~~~~~lG~~ig~~lgg~l~~-~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~-~~--~~~~~~~~~~~~ 244 (1188)
+...+..+|.++++.+++++.+ . .|||.+|++.+++.++..+..++ .||++++++..++ ++ .+...+.+++..
T Consensus 147 i~~~g~~lG~llg~~l~~~l~~~~--~GWr~~f~i~a~l~ll~~l~~~~-~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~ 223 (491)
T PRK11010 147 ISVLGYRLAMLVSGGLALWLADRY--LGWQGMYWLMAALLIPCIIATLL-APEPTDTIPVPKTLEQAVVAPLRDFFGRNN 223 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--cCHHHHHHHHHHHHHHHHHHHHh-cCCCccccccccchhhhHHHHHHHHHcCcC
Confidence 9999999999999999999998 5 69999999999887776555544 5665432111111 11 111222222111
Q ss_pred h-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHH
Q psy4738 245 R-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLS-SLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTT 318 (1188)
Q Consensus 245 ~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~-~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~ 318 (1188)
. ..+...........+.|.|+.+.+|+|..+.+... ....++.+++.++.|+++||+++|+ ....
T Consensus 224 ~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~---------~l~i 294 (491)
T PRK11010 224 AWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFR---------ALMI 294 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------HHHH
Confidence 1 22233334455567888898888999999999987 4666899999999999999999642 2221
Q ss_pred HHHHHH--HHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCc-hhhHHHHHHHHHHHhhhhhhhhHHHHh
Q psy4738 319 IASVGP--ASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGTLMAIVNGIGAISGIISPYLIGI 395 (1188)
Q Consensus 319 i~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~lgg~i~p~l~g~ 395 (1188)
.+.... ...+.......++.........+.....+...+.......+..+ +.+++..|+.|....+|+.+++.+.|.
T Consensus 295 ~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~ 374 (491)
T PRK11010 295 FGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGW 374 (491)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 121111 11111222222232222222222222223333434445455444 678999999999999999999999999
Q ss_pred hccCCCccchHHHHHHHHHHHHHHHHHhhhh
Q psy4738 396 LVPNNGVLSSLPFLLMWLTAIVAGWFSDYLV 426 (1188)
Q Consensus 396 l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (1188)
+.|..| +...+....++.+.+.+...+.+
T Consensus 375 l~~~~G--~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 375 FVEAHG--WPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHhC--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 34455555665555555554443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-22 Score=235.82 Aligned_cols=346 Identities=16% Similarity=0.116 Sum_probs=243.8
Q ss_pred HHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhHh
Q psy4738 13 GFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHI 92 (1188)
Q Consensus 13 ~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~~ 92 (1188)
.++++..+++..++....++.+|.++ +++|+|+.|.|++.+.+++++.++.+
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~----------------------------~~~~~s~~~~g~l~s~~~~g~~i~~~ 56 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQ----------------------------QAFTLTAFQAALVQSAFYGGYFIMAI 56 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH----------------------------HHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777788888889999998 78999999999999999999999999
Q ss_pred hHHHhhcccCchHHHHHHHHHHHHHHHHHHHhh-hccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHHH
Q psy4738 93 PGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA-RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF 171 (1188)
Q Consensus 93 ~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~-~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~ 171 (1188)
+.|++.||+|||+++..+.++++++.++...++ .++++.+++.|++.|+|.|...+....++.++.|+++|++.+++.+
T Consensus 57 ~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (410)
T TIGR00885 57 PAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQ 136 (410)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHH
Confidence 999999999999999999999999998865442 2689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcc------------------------CCCCChhHHHHHHHHHHHHHHHhhh-cccCCCCCC
Q psy4738 172 AGNQIGTVFSSFLSGFLLKYT------------------------DGDWPEIFYLFGILGVLWFVAWCFL-CYNDPASHP 226 (1188)
Q Consensus 172 ~~~~lG~~ig~~lgg~l~~~~------------------------~~gWr~~F~i~g~i~li~~il~~~~-~~~~p~~~~ 226 (1188)
....+|..++|.+++.+.... ..+||++|++.+++.++..+++.+. .|+.+++++
T Consensus 137 ~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~~~ 216 (410)
T TIGR00885 137 SFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHSDA 216 (410)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Confidence 999999999999999885331 0369999999998877765544332 232111111
Q ss_pred CCCHhHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 227 YISQREKEYLADTIGCLA-----RNKIGHDWGLFMISADLPKYMKSVM-KFSIAKNGVLSSLPFLLMWLTAIVAGWFSDY 300 (1188)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~lp~yl~~~~-g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr 300 (1188)
.+++.++...+..++.. ...++......+..++++.|.++.. +.+....+...+.......+|+++++++.||
T Consensus 217 -~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r 295 (410)
T TIGR00885 217 -KQISFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISY 295 (410)
T ss_pred -ccccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00101111111111111 1334444445567788999987632 4455555656666667888999999999999
Q ss_pred HhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCchhhHHHHHHHHH
Q psy4738 301 LVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNG 380 (1188)
Q Consensus 301 ~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~ 380 (1188)
+++| |. ..++.....++.+.....+. ... ...+.+..++.+.++|.......+.-+++..++.+...+
T Consensus 296 ~~~~---------~~-l~i~~~~~~~~~ll~~~~~~-~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~ 363 (410)
T TIGR00885 296 LAAH---------KV-LMAYAIIGMALCLGSIFAGG-HVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM 363 (410)
T ss_pred cCHH---------HH-HHHHHHHHHHHHHHHHHcCC-hHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 9763 32 33333333333333333332 222 333334445555555766666666555554443333333
Q ss_pred HHhhhhhhhhHHHHhhccCC
Q psy4738 381 IGAISGIISPYLIGILVPNN 400 (1188)
Q Consensus 381 ~~~lgg~i~p~l~g~l~~~~ 400 (1188)
. -+|+++.|.+.|.+.|..
T Consensus 364 ~-~~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 364 A-IIGGGIVPPLQGFIIDMK 382 (410)
T ss_pred H-HhccchHHHHHHHHHHHh
Confidence 2 299999999999999954
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=7e-22 Score=233.90 Aligned_cols=351 Identities=13% Similarity=0.017 Sum_probs=251.5
Q ss_pred HHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhHhhHH
Q psy4738 16 GFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGG 95 (1188)
Q Consensus 16 l~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~~~~G 95 (1188)
+.+.++..+.......+.+|.+. +|+|+|.++.|++.+++.+...++++++|
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l----------------------------~~~g~s~~~ig~~~s~~~~~~~~~~~~~g 60 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWL----------------------------KGIGLGEEMIGLLIGAALIARFAGGLFFA 60 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------------------------HHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777888888888 68999999999999999999999999999
Q ss_pred HhhcccCchHH----HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHHH
Q psy4738 96 LLAQKFGGKHT----LGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF 171 (1188)
Q Consensus 96 ~LaDr~Grk~v----l~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~ 171 (1188)
+++||+|||+. +..+..++.+ .++..+ ++++.+++.|+++|.+.+...|...++..++ ++||+++.|...
T Consensus 61 ~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~--~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~ 134 (382)
T TIGR00902 61 PLIKDANHIIIALRLLALASAIFAA--AFSAGA--HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVR 134 (382)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhh--hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHH
Confidence 99999998543 3333322222 244456 8899999999999999999999999987765 578999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCC-CH-hHHHHHHHHHhhhhh----
Q psy4738 172 AGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYI-SQ-REKEYLADTIGCLAR---- 245 (1188)
Q Consensus 172 ~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~-~~-~~~~~~~~~~~~~~~---- 245 (1188)
.+..+|.+++|++++.+.++ +|||+.|++.....+ ..+....+.++.|++++.. ++ ++.+...+.++++..
T Consensus 135 ~~~slG~~~g~~l~g~l~~~--~g~~~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 211 (382)
T TIGR00902 135 LIGSAAFIIGSALFGGLIGM--FDEQNILAILTAGLA-FMLIGFLIKPTIPPKDAIPEDESQGDSAFIALLKNPMNLRFL 211 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHH--cChhHHHHHHHHHHH-HHHHHHHcCCCCCCCccccccccccchhHHHHHcChHHHHHH
Confidence 99999999999999999999 899999998765533 2333333333322221111 11 111111222222111
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Q psy4738 246 -NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGP 324 (1188)
Q Consensus 246 -~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~ 324 (1188)
..+...........+.|.|+++ .|.+..+.|.+.....+...+.....+++.||++.|+ ...++.+..
T Consensus 212 ~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~----------~l~~~~~~~ 280 (382)
T TIGR00902 212 AAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARD----------LLLISAIAC 280 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHH----------HHHHHHHHH
Confidence 3444556677788899999987 8999999999999888999999999999999998542 344566666
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCchhhHHHHHHHHH-HHhhhhhhhhHHHHhhccCCCcc
Q psy4738 325 ASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNG-IGAISGIISPYLIGILVPNNGVL 403 (1188)
Q Consensus 325 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~-~~~lgg~i~p~l~g~l~~~~G~~ 403 (1188)
..........+ +.+.......+-....+...+....+..+.+++++++.+++.+. ...+|..++|.+.|.+.|..|.
T Consensus 281 ~~~~~~~~~~~-~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~- 358 (382)
T TIGR00902 281 VGRWAIIGAIE-AFPLIFLLQILHCGTFAVCHLAAMRYIAAQPGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA- 358 (382)
T ss_pred HHHHHHHHhHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-
Confidence 65555555433 33434444455555555555556666666666789999999875 5678999999999999999863
Q ss_pred chHHHHHHHHHHHHH
Q psy4738 404 SSLPFLLMWLTAIVA 418 (1188)
Q Consensus 404 ~~~~~~~~~~~~~~~ 418 (1188)
..+...+..++++
T Consensus 359 --~~~~~~~~~~~~~ 371 (382)
T TIGR00902 359 --GTFVFMAIIAAAA 371 (382)
T ss_pred --HHHHHHHHHHHHH
Confidence 3344455544443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=248.14 Aligned_cols=143 Identities=17% Similarity=0.216 Sum_probs=125.5
Q ss_pred cccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHh---hhhc---ccchhHHHHHHHH
Q psy4738 570 QQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILT---PMAA---YMGPVWLIVWRFF 643 (1188)
Q Consensus 570 i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~---a~a~---~~~~~~l~~~R~l 643 (1188)
+++|+|.|+++.+++.+.+.+++.+++++.|+++||+||||++..+.+.+.++.+.. +..+ ..+.+.+++.|++
T Consensus 42 l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 121 (392)
T PRK12382 42 VHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLI 121 (392)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999988887766533 2221 1256779999999
Q ss_pred HHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHH
Q psy4738 644 EGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAIL 714 (1188)
Q Consensus 644 ~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~ 714 (1188)
+|++.+...|...+++.|++|+|||++++++.+.+...|.++||++++.+.+..| ||+++.+..+..++
T Consensus 122 ~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g--~~~~~~~~~~~~~~ 190 (392)
T PRK12382 122 LGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG--FAALALTTMVLPLL 190 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988878 99988776555443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=247.30 Aligned_cols=160 Identities=18% Similarity=0.270 Sum_probs=132.6
Q ss_pred ccc-cccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH
Q psy4738 567 EES-QQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEG 645 (1188)
Q Consensus 567 ~~~-i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~G 645 (1188)
.|. +++++|+|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+.+++.++.++++++++ +.+.+++.|+++|
T Consensus 24 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~g 102 (366)
T TIGR00886 24 AVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQ-SYSVLLLLRLFIG 102 (366)
T ss_pred hhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHH
Confidence 464 88999999999999999999999999999999999999999999999999999999998872 3466999999999
Q ss_pred hhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcC--------CCCchHHH-HHHHHHHHHHH
Q psy4738 646 LGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLT--------NNYWPVVF-YLFGAVAILWF 716 (1188)
Q Consensus 646 ig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~--------g~gWr~~F-~i~~~~~~~~~ 716 (1188)
++.+ .++....+++|++|++||+++.++......+|..+++.+++.+.+.. ..+|||.| +..+++..+..
T Consensus 103 ~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 181 (366)
T TIGR00886 103 IAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPA 181 (366)
T ss_pred Hhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHH
Confidence 9965 56778899999999999999999999888888888888877665421 11499999 44566665555
Q ss_pred HHHHhhccCCCC
Q psy4738 717 VVWLFIGYSEPG 728 (1188)
Q Consensus 717 ~~~~~~~~~~pe 728 (1188)
++.+...+|+|+
T Consensus 182 ~~~~~~~~~~~~ 193 (366)
T TIGR00886 182 LLIFFVGADTPP 193 (366)
T ss_pred HHHHHhcccCCc
Confidence 555555555543
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.1e-24 Score=247.22 Aligned_cols=153 Identities=12% Similarity=0.097 Sum_probs=136.5
Q ss_pred cccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcc---cchhHHHHHHHHH
Q psy4738 568 ESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAY---MGPVWLIVWRFFE 644 (1188)
Q Consensus 568 ~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~---~~~~~l~~~R~l~ 644 (1188)
|...+|++.++.+.+++.+.+.+++.+++++.|+++||+||||++..+.++.+++.++.++++. .+.+.+++.|+++
T Consensus 23 ~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (365)
T TIGR00900 23 PLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGIL 102 (365)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 4456778889999999999999999999999999999999999999999999999888877651 1457799999999
Q ss_pred HhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhh
Q psy4738 645 GLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFI 722 (1188)
Q Consensus 645 Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~ 722 (1188)
|++.+...|...+++.|++|++||+++.++.+....+|.++||.+++.+.+..+ ||+.|++.++..++..+..+..
T Consensus 103 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 103 AIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG--IKWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999998888 9999999888766655444333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-23 Score=244.61 Aligned_cols=158 Identities=25% Similarity=0.456 Sum_probs=143.9
Q ss_pred cccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH
Q psy4738 566 PEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEG 645 (1188)
Q Consensus 566 a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~G 645 (1188)
..|.+.+++|.++.+.+++.+.+.+++.++.++.|+++||+|||+++..+.++.+++.+++++++ +.+.+++.|+++|
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g 116 (398)
T TIGR00895 39 AAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALAT--NVTQLLILRFLAG 116 (398)
T ss_pred hHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcc--chHHHHHHHHHHh
Confidence 35778889999999999999999999999999999999999999999999999999999999888 5677999999999
Q ss_pred hhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhccC
Q psy4738 646 LGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYS 725 (1188)
Q Consensus 646 ig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~~ 725 (1188)
++.+...+...+++.|++|+++|+++.++...+..+|..+++.+++.+.+..+ ||+.|++.+++.++..+.....+|+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (398)
T TIGR00895 117 LGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG--WRSLFYVGGIAPLLLLLLLMRFLPE 194 (398)
T ss_pred cccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc--ceeehhhhhhHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999998887 9999999987776666665566655
Q ss_pred CC
Q psy4738 726 EP 727 (1188)
Q Consensus 726 ~p 727 (1188)
+|
T Consensus 195 ~~ 196 (398)
T TIGR00895 195 SI 196 (398)
T ss_pred CC
Confidence 44
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-22 Score=237.54 Aligned_cols=159 Identities=20% Similarity=0.282 Sum_probs=145.4
Q ss_pred CcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q psy4738 565 LPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFE 644 (1188)
Q Consensus 565 ~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~ 644 (1188)
...|.+.+|+|.++++.++..+.+.+++.+++++.|+++||+|||+++..+.++++++.+++.+++ +.+.+++.|+++
T Consensus 24 ~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~ 101 (392)
T PRK10473 24 VGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAE--TSSLFLAGRFLQ 101 (392)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHH
Confidence 356888999999999999999999999999999999999999999999999999999999999988 556699999999
Q ss_pred HhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q psy4738 645 GLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGY 724 (1188)
Q Consensus 645 Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~ 724 (1188)
|++.+...+....++.|++|+++|+++.++.+....+|..++|.+++.+.+..+ ||+.|++.+++.++..+...+..|
T Consensus 102 g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g--~~~~~~~~~~~~~i~~~~~~~~~~ 179 (392)
T PRK10473 102 GIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP--WQSLFYTMAAMGILVLLLSLFILK 179 (392)
T ss_pred HhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC--hHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999887777 999999999888877776666665
Q ss_pred CCC
Q psy4738 725 SEP 727 (1188)
Q Consensus 725 ~~p 727 (1188)
|++
T Consensus 180 ~~~ 182 (392)
T PRK10473 180 ETR 182 (392)
T ss_pred CCC
Confidence 543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=243.05 Aligned_cols=156 Identities=24% Similarity=0.250 Sum_probs=137.3
Q ss_pred cccccccccCcchhh-----hhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHH
Q psy4738 566 PEESQQYEFDWDETT-----QGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVW 640 (1188)
Q Consensus 566 a~~~i~~~~~~s~~~-----~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~ 640 (1188)
..|.+.+|+|.+..+ .+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++++++ +.+++++.
T Consensus 36 ~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 113 (408)
T PRK09874 36 FLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQ--NIWQFLIL 113 (408)
T ss_pred hHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHH
Confidence 346677888887654 48899999999999999999999999999999999999999999988887 66779999
Q ss_pred HHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHH
Q psy4738 641 RFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWL 720 (1188)
Q Consensus 641 R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~ 720 (1188)
|++.|++.+ ..|....++.+++|+++|+++.++...+..+|..++|.+++.+.+..+ ||+.|++.+++.++..+...
T Consensus 114 ~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~ 190 (408)
T PRK09874 114 RALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG--LRPVFFITASVLFLCFLVTL 190 (408)
T ss_pred HHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHH
Confidence 999999854 678888999999999999999999999999999999999999998878 99999999988877766666
Q ss_pred hhccCC
Q psy4738 721 FIGYSE 726 (1188)
Q Consensus 721 ~~~~~~ 726 (1188)
+..||+
T Consensus 191 ~~~~~~ 196 (408)
T PRK09874 191 FCIREN 196 (408)
T ss_pred HHhccC
Confidence 665554
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-23 Score=248.25 Aligned_cols=127 Identities=24% Similarity=0.278 Sum_probs=117.3
Q ss_pred cccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHh---hhhcccchhHHHHHHH
Q psy4738 566 PEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILT---PMAAYMGPVWLIVWRF 642 (1188)
Q Consensus 566 a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~---a~a~~~~~~~l~~~R~ 642 (1188)
..|.+++++|+|+++.++..+.|.+++.+++++.|++.||+||||++..++++++++++++ ++++ +++.++++|+
T Consensus 48 ~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~--~~~~ll~~r~ 125 (438)
T PRK10133 48 LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM--NYTLFLVGLF 125 (438)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHH
Confidence 4588999999999999999999999999999999999999999999999999999999886 4566 5677999999
Q ss_pred HHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4738 643 FEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLL 694 (1188)
Q Consensus 643 l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~ 694 (1188)
++|+|.|...+..+.++.|+.|+++|++.+++.+..+.+|..+||++++.+.
T Consensus 126 l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 126 IIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887787878899999999999999999988654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.4e-22 Score=265.57 Aligned_cols=313 Identities=13% Similarity=0.093 Sum_probs=216.7
Q ss_pred hhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHH---HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhH
Q psy4738 73 EKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGF---GILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPA 149 (1188)
Q Consensus 73 ~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~---~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~ 149 (1188)
....++..++|++.+.++++++|+++||||||+++.. ..++..+..+.+... +|+++++++|+++|++.+...|+
T Consensus 51 ~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~--~s~~~l~~~~~l~gi~~a~~~p~ 128 (1140)
T PRK06814 51 NALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL--NSVPLLFAALFLMGIHSALFGPI 128 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHhhchH
Confidence 3557889999999999999999999999999998643 333333333444444 78999999999999999999999
Q ss_pred HHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Q psy4738 150 LNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYIS 229 (1188)
Q Consensus 150 ~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~ 229 (1188)
..+++.+++|+++|++++|+.+++.++|.++||+++|++.+. .||++.|...++.+++..++ .+.+++++++++...
T Consensus 129 ~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 205 (1140)
T PRK06814 129 KYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS--GNFVILVALLMGIAVLGWLA-SLFIPKTGNAAPDLK 205 (1140)
T ss_pred HHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHH-HhhCCCCCCCCCCCe
Confidence 999999999999999999999999999999999999999998 89999995444444444333 344444433222111
Q ss_pred H--h---H-HHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 230 Q--R---E-KEYLADTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFS 298 (1188)
Q Consensus 230 ~--~---~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~ls 298 (1188)
. . + ........+.... ..+..+.....+..++|.|+++.+|.+..+.|++.+...++.+++.++.|+++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~ 285 (1140)
T PRK06814 206 IDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLS 285 (1140)
T ss_pred eccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1 1 0111111111110 22333445567778999999999999999999999999999999999999999
Q ss_pred HHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHh------------------h-cchHH-HHHHHHHHHHHHHhhhhhH
Q psy4738 299 DYLVSKDIFSVTVIRKIFTTIASVGPASGVILASY------------------A-GCDQI-LVVTLFTVGMAFMGFFYPS 358 (1188)
Q Consensus 299 dr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~------------------~-~~~~~-~~~~~~~~~~~~~~~~~~~ 358 (1188)
|+..+++.... +.++.+++.+.+.. . ..+.+ ..+..+.++.+......+.
T Consensus 286 ~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 355 (1140)
T PRK06814 286 EGRITLLYVPI----------GALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPL 355 (1140)
T ss_pred CCceeeeeehH----------HHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHH
Confidence 87665432111 11111111111111 1 12222 2333333333333333444
Q ss_pred HHHhhcccCchhhHHHHHHHHHHHhhhhhhhhHHHHhhccCC
Q psy4738 359 LKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNN 400 (1188)
Q Consensus 359 ~~~~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~ 400 (1188)
........+++.+|+++|+.|+..+++..+++.+.|.+.+..
T Consensus 356 ~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~ 397 (1140)
T PRK06814 356 FAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG 397 (1140)
T ss_pred HHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444556689999999999999999999999999988643
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-21 Score=232.05 Aligned_cols=149 Identities=17% Similarity=0.227 Sum_probs=131.0
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcc-cCchHHHHHHHHHHHHHHHHHHHhhhccHHH-HHHHHHHHHhhhc
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQK-FGGKHTLGFGILSTAIFTLLTPFAARQSANW-LIALRFFEGLGEG 144 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr-~Grk~vl~~~lll~~v~sll~a~a~~~s~~~-lli~R~l~Glg~g 144 (1188)
+++|++.++.+++.+.|.....+..+++|+++|| +||||++..+.+++++++++++++ .+... +++.|+++|+|.|
T Consensus 43 ~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~--~~~~~ll~~~~~l~~ig~g 120 (489)
T PRK10207 43 KQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS--LLKPDLIFIALGTIAVGNG 120 (489)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHhccc
Confidence 5799999999999999998888889999999999 999999999999999999999998 65444 5589999999999
Q ss_pred cchhHHHHHHhhccCCC--chhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhccc
Q psy4738 145 TTFPALNTLLAQWVPPT--ERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN 220 (1188)
Q Consensus 145 ~~~p~~~~li~~~~p~~--~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~ 220 (1188)
...|...++++|++|++ +|.++.++++.+.++|.++||.+++++.++ .|||+.|++.++ +++..++.+...++
T Consensus 121 ~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~--~gw~~~F~i~~i-~~~~~~~~~~~~~~ 195 (489)
T PRK10207 121 LFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK--FGYSVTYNLCGA-GLIIALLVYFACRG 195 (489)
T ss_pred cccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHH-HHHHHHHHHHHcch
Confidence 99999999999999987 458899999999999999999999999999 899999999654 55555544444443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-23 Score=245.43 Aligned_cols=156 Identities=17% Similarity=0.107 Sum_probs=134.1
Q ss_pred ccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhh---hcccchhHHHHHHHH
Q psy4738 567 EESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPM---AAYMGPVWLIVWRFF 643 (1188)
Q Consensus 567 ~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~---a~~~~~~~l~~~R~l 643 (1188)
.|...+|++.++.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+..+. ..+.+.+.+++.|++
T Consensus 40 ~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 119 (417)
T PRK10489 40 VPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLW 119 (417)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 35566778889999999999999999999999999999999999999998888887766542 222356779999999
Q ss_pred HHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhc
Q psy4738 644 EGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIG 723 (1188)
Q Consensus 644 ~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~ 723 (1188)
+|++.+...++..+++.|++|+++|+++.++.+....+|..+||.+++.+.+..+ |||.|++.++..++..+..+. +
T Consensus 120 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~--~~~~~~~~~~~~~~~~~~~~~-l 196 (417)
T PRK10489 120 DGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGG--VAWNYGLAAAGTFITLLPLLR-L 196 (417)
T ss_pred HHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHh-C
Confidence 9999999999999999999999999999999999999999999999999998877 999999988776665554443 3
Q ss_pred cC
Q psy4738 724 YS 725 (1188)
Q Consensus 724 ~~ 725 (1188)
|+
T Consensus 197 ~~ 198 (417)
T PRK10489 197 PA 198 (417)
T ss_pred CC
Confidence 44
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-21 Score=225.50 Aligned_cols=350 Identities=14% Similarity=-0.009 Sum_probs=236.9
Q ss_pred HHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhHhhHHHhhc
Q psy4738 20 VANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQ 99 (1188)
Q Consensus 20 ~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaD 99 (1188)
++..+.....+.+.+|... +|+|+|.++.|++.+++.+++.++++++|+++|
T Consensus 13 ~~~~~~~~g~~~p~l~~~l----------------------------~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~d 64 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWL----------------------------KGQGYTPETIGLLLGAGLVARFLGSLLIAPRVK 64 (382)
T ss_pred HHHHHHHHHHHhhhHHHHH----------------------------HhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 4444444566677777777 678999999999999999999999999999999
Q ss_pred ccCch----HHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHHHHHHH
Q psy4738 100 KFGGK----HTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQ 175 (1188)
Q Consensus 100 r~Grk----~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~~~~~ 175 (1188)
|+||| +.+.....+. ....+..+ ++++.+++.|+++|++.+...|...+++.+| ++||+++.+.......
T Consensus 65 r~g~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~ 138 (382)
T PRK11128 65 DPSQLIPALRLLALLTLLF--AVAFWFGA--HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGS 138 (382)
T ss_pred hhcchHHHHHHHHHHHHHH--HHHHHHhc--ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHH
Confidence 99984 3333222222 12223334 7899999999999999999999998888887 4678888999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccC-CCCCCCCCHhH-HHHHHHHHhhhhh-----hHH
Q psy4738 176 IGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYND-PASHPYISQRE-KEYLADTIGCLAR-----NKI 248 (1188)
Q Consensus 176 lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~-p~~~~~~~~~~-~~~~~~~~~~~~~-----~~~ 248 (1188)
+|.++||++++++.++ +|||..|++.++..++..+ ..+..||+ |++++..++++ ++...+.++++.. ..+
T Consensus 139 lg~~igp~lgg~l~~~--~g~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 215 (382)
T PRK11128 139 IAFVIGSALTGKLVSW--FGEQAILWILTAGVASMLL-GQLLRPTIMPQGESRQQESAGWPAWKALLKEPTVWRFLLCVS 215 (382)
T ss_pred HHHHHHHHHHHHHHHH--cChhHHHHHHHHHHHHHHH-HHHccCCCCCccccccccccccchHHHHHcChhHHHHHHHHH
Confidence 9999999999999999 8999999988765544433 33334432 21111111000 1112222222111 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHH
Q psy4738 249 GHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGV 328 (1188)
Q Consensus 249 ~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l 328 (1188)
...........++|.|+++ .|.+..+.|.+.+...+...+...+.+++.||+++|+ ...++....++..
T Consensus 216 l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~----------~l~~~~~~~~~~~ 284 (382)
T PRK11128 216 LLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARD----------LLLLSAICGVVRW 284 (382)
T ss_pred HHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH----------HHHHHHHHHHHHH
Confidence 3334455567788999976 8999999999999888888889999999999988542 2334444545444
Q ss_pred HHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCchhhHHHHHHHHHH-HhhhhhhhhHHHHhhccCCCccchHH
Q psy4738 329 ILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGI-GAISGIISPYLIGILVPNNGVLSSLP 407 (1188)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~-~~lgg~i~p~l~g~l~~~~G~~~~~~ 407 (1188)
+.....+ +.+...+...+.....+...+....+..+.+++++++..+..+.. ..+|..++|.+.|.+.|..|. ..
T Consensus 285 ~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~---~~ 360 (382)
T PRK11128 285 GLMGSTT-ALPWLIVIQILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA---GV 360 (382)
T ss_pred HHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH---HH
Confidence 4444433 333333333333444444455555656666777788889988744 456678999999999999874 23
Q ss_pred HHHHHHHHHHHHHH
Q psy4738 408 FLLMWLTAIVAGWF 421 (1188)
Q Consensus 408 ~~~~~~~~~~~~~~ 421 (1188)
+...+++.+++...
T Consensus 361 ~~~~~~~~~~~~~~ 374 (382)
T PRK11128 361 FWVMALVALPALFI 374 (382)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=239.22 Aligned_cols=152 Identities=22% Similarity=0.234 Sum_probs=138.2
Q ss_pred ccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhc
Q psy4738 569 SQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGE 648 (1188)
Q Consensus 569 ~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~ 648 (1188)
.+++++|+|..+.|++.+.+.+...+.+++.|+++||+|||+++..+.++.+++.+++++++ +.|++++.|+++|++.
T Consensus 36 ~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~g~~~ 113 (400)
T PRK11646 36 RFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAH--EPWLLWLSCILSGLGG 113 (400)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999888 6788999999999999
Q ss_pred ccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhccC
Q psy4738 649 GTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYS 725 (1188)
Q Consensus 649 g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~~ 725 (1188)
+...|...+++.|++|+++|+++.|+......+|..+||.+++.+. ..+ ||+.|++.++..++..+...+.+||
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g--~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 114 TLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD--FRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--HHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999999999999999998 556 9999999988877765554455443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-22 Score=235.97 Aligned_cols=131 Identities=16% Similarity=0.159 Sum_probs=122.9
Q ss_pred CcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q psy4738 565 LPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFE 644 (1188)
Q Consensus 565 ~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~ 644 (1188)
...|.+.+|+|.|..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++++.+++++ +.+.++++|+++
T Consensus 27 ~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~ 104 (381)
T PRK03633 27 TLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMV--GFWSWLAWRFVA 104 (381)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHH
Confidence 345888899999999999999999999999999999999999999999999999999999999998 667799999999
Q ss_pred HhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy4738 645 GLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLT 697 (1188)
Q Consensus 645 Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~ 697 (1188)
|++.+...|.....+.+..++++|+++++.+..+..+|..+||.+++.+.+..
T Consensus 105 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 157 (381)
T PRK03633 105 GIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL 157 (381)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999988999999999999999999999999999999999987653
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-21 Score=232.46 Aligned_cols=346 Identities=15% Similarity=0.112 Sum_probs=213.4
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHH-hhhccHH-HHHHHHHHHHhhhc
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF-AARQSAN-WLIALRFFEGLGEG 144 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~-a~~~s~~-~lli~R~l~Glg~g 144 (1188)
+++|+|+.+.|++.+.+.+++.++++++|+++||+|||+++..+..+.+++...... ...+... ..+....+.|+..+
T Consensus 39 ~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (420)
T PRK09528 39 DINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLG 118 (420)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999999999999999999999998877766655432211 1001100 11122223333333
Q ss_pred cchhHHHHHHhhccC--CCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCC
Q psy4738 145 TTFPALNTLLAQWVP--PTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP 222 (1188)
Q Consensus 145 ~~~p~~~~li~~~~p--~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p 222 (1188)
..++.....+.+|.+ ++++++.+|.......+|.+++|++++.+.+. +||++|++.++++++..+++++..+|+|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 195 (420)
T PRK09528 119 FGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNI---NPQINFWLGSGSALILLVLLFFAKPDAP 195 (420)
T ss_pred hhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhc---CchHhHHHHHHHHHHHHHHHhccccccc
Confidence 333333333344433 35677888999999999999999999999764 8999999998888877777666665554
Q ss_pred CCCCCC----CHhHH---HHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHH
Q psy4738 223 ASHPYI----SQREK---EYLADTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVM---KFSIAKNGVLSSLPFLLM 287 (1188)
Q Consensus 223 ~~~~~~----~~~~~---~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~---g~s~~~~g~l~~~~~l~~ 287 (1188)
++++.. .++++ +...+.++++.. ........+.....+.|.|+.+.+ +.+..+.|.+.+...+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 275 (420)
T PRK09528 196 STAKVANALGANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLE 275 (420)
T ss_pred chhhhccchhcccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHH
Confidence 432100 00111 111111211111 111222233445557888887654 466678899999999999
Q ss_pred HHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhc-cc
Q psy4738 288 WLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNAL-DL 366 (1188)
Q Consensus 288 ~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 366 (1188)
.++.+..|++.||+++|+. ..++.+..++..+......+. +.......+.....+...+....... ..
T Consensus 276 ~~~~~~~g~l~dr~g~~~~----------~~~~~~l~~~~~~l~~~~~~~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 344 (420)
T PRK09528 276 ALIMFFAPFIINRIGAKNA----------LLLAGTIMAVRIIGSGFATGP-LEVSILKLLHAFEVPFLLVGVFKYITLNF 344 (420)
T ss_pred HHHHHHHHHHHHHhCcchh----------hHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999998643 233333334444444443333 32222222222233332233333333 45
Q ss_pred CchhhHHHHHH-HHHHHhhhhhhhhHHHHhhccCCCccchHHHHHHHHHHHHHHHHHhhhhhc
Q psy4738 367 SPNYAGTLMAI-VNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSDYLVSK 428 (1188)
Q Consensus 367 ~p~~~g~~~g~-~~~~~~lgg~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (1188)
+++.+++..+. .|+...+|++++|.+.|++.|..| +...+...+++.++...+.....++
T Consensus 345 ~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G--~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 345 DVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG--FQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred CccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56778887665 678889999999999999999887 3444555555544444444444333
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-22 Score=248.84 Aligned_cols=265 Identities=16% Similarity=0.219 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhH
Q psy4738 12 LGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMH 91 (1188)
Q Consensus 12 i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~ 91 (1188)
.++..++.++...+.+..++.+++.+. ++|+++.++.|++.++|.+++++++
T Consensus 34 ~~~~~~~~~~~~~~~~g~~~~~l~~ie----------------------------k~F~lss~~~G~i~s~~~i~~~~~~ 85 (633)
T TIGR00805 34 FSLLLTCAQLQGLLYNGLVNSSLTTIE----------------------------RRFKLSTSSSGLINGSYEIGNLLLI 85 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhh----------------------------hhhCCCCCcceeeeehhhHHHHHHH
Confidence 334455677888888899999999888 7999999999999999999999999
Q ss_pred hhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhh----------------------------------------------
Q psy4738 92 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA---------------------------------------------- 125 (1188)
Q Consensus 92 ~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~---------------------------------------------- 125 (1188)
++.|+++||+|||+++.+++++++++++++++..
T Consensus 86 i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~ 165 (633)
T TIGR00805 86 IFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQ 165 (633)
T ss_pred HHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccc
Confidence 9999999999999999999999999999998762
Q ss_pred ---hccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-CC-------
Q psy4738 126 ---RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT-DG------- 194 (1188)
Q Consensus 126 ---~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~-~~------- 194 (1188)
...+..++++|+++|+|.+..+|.+.+++.||+|+++|+++++++..+..+|+++|+++++++.+.. ++
T Consensus 166 ~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~ 245 (633)
T TIGR00805 166 HKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTED 245 (633)
T ss_pred cCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCC
Confidence 0025578899999999999999999999999999999999999999999999999999999998651 10
Q ss_pred ------------CCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCC--CHhH------------------HHHHHHHHhh
Q psy4738 195 ------------DWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYI--SQRE------------------KEYLADTIGC 242 (1188)
Q Consensus 195 ------------gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~--~~~~------------------~~~~~~~~~~ 242 (1188)
+||..|++.++++++..+.++++.++.|+++++. +.++ .+...+..+.
T Consensus 246 ~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (633)
T TIGR00805 246 VILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKR 325 (633)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHH
Confidence 2777899999999888777666655555432110 0000 0000011111
Q ss_pred hhh---------hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Q psy4738 243 LAR---------NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFL-LMWLTAIVAGWFSDYLVSK 304 (1188)
Q Consensus 243 ~~~---------~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l-~~~ig~~~~g~lsdr~~~r 304 (1188)
..+ ..+.....++++.+|+|.|+++.+|++..+++++.....+ +.+++.+++|+++||++.+
T Consensus 326 Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~ 397 (633)
T TIGR00805 326 LLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN 397 (633)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence 111 4445566788899999999999999999999999887766 6788999999999999854
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-21 Score=256.73 Aligned_cols=320 Identities=16% Similarity=0.136 Sum_probs=221.9
Q ss_pred cccCC--hhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhh-hccHHHHHHHHHHHHhhhc
Q psy4738 68 EFDWD--EKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA-RQSANWLIALRFFEGLGEG 144 (1188)
Q Consensus 68 ~~~~s--~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~-~~s~~~lli~R~l~Glg~g 144 (1188)
+++.+ ....+++.++|++++.++++++|+++||||||+++..+.++..+..+++.++. .++++.+++.|+++|++.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 118 (1146)
T PRK08633 39 AYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSA 118 (1146)
T ss_pred HcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 44443 45579999999999999999999999999999999998877666655544331 2689999999999999999
Q ss_pred cchhHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-------CCCCChhHHHHHHHHHHHHHHHhhh
Q psy4738 145 TTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT-------DGDWPEIFYLFGILGVLWFVAWCFL 217 (1188)
Q Consensus 145 ~~~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~-------~~gWr~~F~i~g~i~li~~il~~~~ 217 (1188)
...|+..+++.|++|+++|++++|+...+..+|.++|+++++++.+.. ..+|++.+.+..+...+..++..+.
T Consensus 119 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1146)
T PRK08633 119 IYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYR 198 (1146)
T ss_pred hhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999998640 0245666655554444444444445
Q ss_pred cccCCCCCCCCC-Hh---HHHHHHHHH----hhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHH-HHHHHHHHH
Q psy4738 218 CYNDPASHPYIS-QR---EKEYLADTI----GCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIA-KNGVLSSLP 283 (1188)
Q Consensus 218 ~~~~p~~~~~~~-~~---~~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~-~~g~l~~~~ 283 (1188)
.++.|+.++... ++ ......+.. +.... ..++.....+....++|.|+++.+|++.. +.+++.+..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~ 278 (1146)
T PRK08633 199 LPKVPAAAPEVFDKKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAAS 278 (1146)
T ss_pred CcCCCCCCcccccccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHH
Confidence 566554332210 00 011111111 11110 22233334556778899999999999998 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhh
Q psy4738 284 FLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNA 363 (1188)
Q Consensus 284 ~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (1188)
.++.+++.++.++++||.++++. ..++.++.+++++.+.... +.....+...+...+.+...+......
T Consensus 279 ~ig~~~g~~~~g~l~~r~~~~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~ 347 (1146)
T PRK08633 279 AIGIGIGSLLAGRLSGRHIELGL----------VPLGALGLALSLFLLPTAP-SLASVLVLFFLFGFSAGLFIVPLNALI 347 (1146)
T ss_pred HHHHHHHHHHHHHHhCCceEccc----------hhHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999886543 2233333333333333333 222222333333333344444444455
Q ss_pred ccc-CchhhHHHHHHHHHHHhhhhhhhhHHHHhhcc
Q psy4738 364 LDL-SPNYAGTLMAIVNGIGAISGIISPYLIGILVP 398 (1188)
Q Consensus 364 ~~~-~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~ 398 (1188)
.+. +++.||+++|+.+++.++++.+++.+.+.+..
T Consensus 348 ~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 348 QFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred hhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 55889999999999999999888877776544
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-22 Score=235.32 Aligned_cols=155 Identities=18% Similarity=0.110 Sum_probs=122.9
Q ss_pred ccccccCcchhhhhHHHHHH-HHHHHHHHhhhhhhhhhhCChhHH-HHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHh
Q psy4738 569 SQQYEFDWDETTQGLILGSF-YWGYVIMHIPGGLLAQKFGGKHTL-GFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGL 646 (1188)
Q Consensus 569 ~i~~~~~~s~~~~~~i~s~~-~l~~~~~~~~~G~L~Dr~Grr~~l-~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gi 646 (1188)
.+++|+|+|+++.|++.+.+ ..++.+++++.++ .||+||||.+ ..+.+..+++..+.++++ +.+++++.|.+.|.
T Consensus 41 ~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~ 117 (393)
T PRK15011 41 FLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNR--NYFVLLFVGVFLSS 117 (393)
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHH
Confidence 45789999999999998765 4466666666666 9999999875 566677778888888887 56667666655555
Q ss_pred hcccchhHHHHHHHhccCCCcc--hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q psy4738 647 GEGTTFPAANQLLAAWIPKTER--GKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGY 724 (1188)
Q Consensus 647 g~g~~~p~~~~~i~~~~~~~~r--g~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~ 724 (1188)
..+...|....++.|+.++++| +...++.+++.++|.++||++++.+.++.| ||+.|++.++..++..+..++.+|
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g--w~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 118 FGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS--FTVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred HHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5567889999999998877666 345688899999999999999999998888 999999999888887777666677
Q ss_pred CCCC
Q psy4738 725 SEPG 728 (1188)
Q Consensus 725 ~~pe 728 (1188)
|.|+
T Consensus 196 ~~~~ 199 (393)
T PRK15011 196 SMRK 199 (393)
T ss_pred ccCC
Confidence 6543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=239.13 Aligned_cols=155 Identities=15% Similarity=0.162 Sum_probs=128.9
Q ss_pred ccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhh-----CChhH-HHHHHHHHHHHHHHhhhhc-ccchhHHHH
Q psy4738 567 EESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKF-----GGKHT-LGFGILSTAIFTILTPMAA-YMGPVWLIV 639 (1188)
Q Consensus 567 ~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~-----Grr~~-l~~~~~~~~i~~ll~a~a~-~~~~~~l~~ 639 (1188)
.|...++.|.|.++++.. +.....+ ++++++|+++||+ ||||. +..+.+..+++...+++.+ ..+.+.+.+
T Consensus 35 l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~ 112 (491)
T PRK11010 35 LQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAA 112 (491)
T ss_pred HHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 355567778898899886 5555555 5899999999999 99984 7788888888888777763 235677999
Q ss_pred HHHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCchHHHHHHHHHHHHHHHH
Q psy4738 640 WRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLK-LTNNYWPVVFYLFGAVAILWFVV 718 (1188)
Q Consensus 640 ~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~-~~g~gWr~~F~i~~~~~~~~~~~ 718 (1188)
.|+++|++.+...+...+++.|++|++||+++.++...+..+|.++++.+++.+.+ ..| ||++|++.+++.++..+.
T Consensus 113 ~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~G--Wr~~f~i~a~l~ll~~l~ 190 (491)
T PRK11010 113 LAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLG--WQGMYWLMAALLIPCIIA 190 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988 456 999999999887776555
Q ss_pred HHhhccCC
Q psy4738 719 WLFIGYSE 726 (1188)
Q Consensus 719 ~~~~~~~~ 726 (1188)
.++ .||+
T Consensus 191 ~~~-~~e~ 197 (491)
T PRK11010 191 TLL-APEP 197 (491)
T ss_pred HHh-cCCC
Confidence 544 4443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=227.87 Aligned_cols=330 Identities=25% Similarity=0.418 Sum_probs=254.7
Q ss_pred CcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHH
Q psy4738 565 LPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFE 644 (1188)
Q Consensus 565 ~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~ 644 (1188)
...+.+.+++|.++++.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++.+...+++ +.+.+++.|+++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ 97 (352)
T cd06174 20 PALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFAS--SLWLLLVGRFLL 97 (352)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHH
Confidence 345677788899999999999999999999999999999999999999999999999999999987 567799999999
Q ss_pred HhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q psy4738 645 GLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGY 724 (1188)
Q Consensus 645 Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~ 724 (1188)
|++.+...+....++.|++|+|||++..++.+....+|..++|.+++.+.+..+ ||+.|++.+++.++..+...+.
T Consensus 98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-- 173 (352)
T cd06174 98 GLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG--WRWLFLILAILGLLLALLLLFL-- 173 (352)
T ss_pred HcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999888 9999999998888776665555
Q ss_pred CCCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeecCCCccc
Q psy4738 725 SEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTPWK 804 (1188)
Q Consensus 725 ~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1188)
+ +
T Consensus 174 --~---------------~------------------------------------------------------------- 175 (352)
T cd06174 174 --L---------------R------------------------------------------------------------- 175 (352)
T ss_pred --H---------------H-------------------------------------------------------------
Confidence 1 0
Q ss_pred ccccchhHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhcccccccccchhHHHhhhccCcchhHHHHHHHHhhcccccc
Q psy4738 805 EMATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSATSMGPAVGIILASYSGCNKVLAVMFFAIGMGFMGFY 884 (1188)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 884 (1188)
.++...+..+...........+.|.+.++..|.+..
T Consensus 176 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 211 (352)
T cd06174 176 ------LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAA-------------------------------------- 211 (352)
T ss_pred ------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHH--------------------------------------
Confidence 011122233344445556667788888776666643
Q ss_pred cCcccccccCCChhhHHHHHHHHhcccccccccccccccccccccccccccCCCCCCCcchhHHHHhhhhhhcccCCCCC
Q psy4738 885 YPSIRINSLDLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHGKQARYHWTNRAPYSFNFPLFKYVLRKHADKYNRFQDLP 964 (1188)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 964 (1188)
T Consensus 212 -------------------------------------------------------------------------------- 211 (352)
T cd06174 212 -------------------------------------------------------------------------------- 211 (352)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCchhhhcccchhhHHhhHhhcccchhhhhhcccchhhhccCccchhhHHHHHHHHhhhchhhHHHHhhccchhHHHHHH
Q psy4738 965 PTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASNGLLSALPFLFMWIFSQGAGCLSDFIVERQWFSMTLTRKI 1044 (1188)
Q Consensus 965 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~~~~~~i~~~~~g~lsd~~~~r~~~~~~~~r~~ 1044 (1188)
+.+.......+...++..+.++++||.++|+ +
T Consensus 212 ---------------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------~-- 243 (352)
T cd06174 212 ---------------------------------------EAGLLLSLFGLGGILGALLGGLLSDRLGRRR-------L-- 243 (352)
T ss_pred ---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------H--
Confidence 3344556666888899999999999985543 0
Q ss_pred HHHhhhhhhHHHHHhhhccCCchHHHHHHHHHHhhhhccccccccccccCCCC-cchhHHHHHhhhhhhhhhhhhhhhhe
Q psy4738 1045 FATAASMGPAVGIILASYSGCNKVLAVMFFAIGMGFMGFYYPSIRINSLDLSP-NYAATLMAIVNGLGAVSGIFSAPLIG 1123 (1188)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~ 1123 (1188)
....+.....++........ +.........+...+.+...+.......+..| ++|+...|+.+..+++++.+++.+.+
T Consensus 244 ~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g 322 (352)
T cd06174 244 LLLIGLLLAALGLLLLALAP-SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAG 322 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544433 33333333333334444444555555555554 77999999999999999999999999
Q ss_pred eecCCCccchhHHHHHHHHHHHHHhhhhhhe
Q psy4738 1124 IMTPNSTMSEWRLVFWLTFIILAVTNLFYLV 1154 (1188)
Q Consensus 1124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1154 (1188)
.+.+.. +|+..+.+..++.+++.+....
T Consensus 323 ~l~~~~---~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 323 LLLDTG---GYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHhccc---CcchHHHHHHHHHHHHHHHhee
Confidence 998764 3888888888887777665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-21 Score=220.25 Aligned_cols=342 Identities=15% Similarity=0.138 Sum_probs=234.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhh-HHHHHHHHHHHH
Q psy4738 9 RYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKT-QGLILSAFYWGY 87 (1188)
Q Consensus 9 r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~-~g~l~s~~~lg~ 87 (1188)
.|.-..++.+.+-..--.|.+.+.+.|.|. +|+|+|++| .|.+.++|+++|
T Consensus 24 ~W~~~~~~lC~fGF~~e~R~n~s~a~p~L~----------------------------~elglT~~qv~G~I~s~F~ysY 75 (511)
T TIGR00806 24 SWRVLVLYLCFYGFMAQFRPGESFITPYLL----------------------------TVLNFTEETVTNEIIPVLPYSH 75 (511)
T ss_pred chhHHHHHHHHHHHHHHhhchHHHHHHHHH----------------------------HHcCCCHHHhcchHHHHHHHHH
Confidence 344444444444445556999999999999 799999999 999999999999
Q ss_pred HHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHH
Q psy4738 88 VIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG 167 (1188)
Q Consensus 88 ~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~ 167 (1188)
+++++|.|+++||+|.|+++..+++.+++.+++.+++ +++..+.+.|++.|+++|..+ +..+++.+|+|++||+++.
T Consensus 76 al~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa--~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~rat 152 (511)
T TIGR00806 76 LAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG--TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAA 152 (511)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHH
Confidence 9999999999999999999999999999999999999 999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHH--HHHHHHHHHHHhhhcccCCCC---CCC---------------
Q psy4738 168 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLF--GILGVLWFVAWCFLCYNDPAS---HPY--------------- 227 (1188)
Q Consensus 168 gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~--g~i~li~~il~~~~~~~~p~~---~~~--------------- 227 (1188)
|+..++..+|.+++++++++ ... +|||+-+.+. ...+.++.+++.+++|..+++ |+.
T Consensus 153 si~~sg~~vG~~Ia~~L~ql-l~s--~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~ 229 (511)
T TIGR00806 153 AYSRAAVLLGVFLSSVLGQL-LVT--LGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMV 229 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHh--cCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCC
Confidence 99999999999999999999 445 7999877653 444455566666666633221 000
Q ss_pred --CC-Hh---HHH---H----HHHHHhhhhh---------hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q psy4738 228 --IS-QR---EKE---Y----LADTIGCLAR---------NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFL 285 (1188)
Q Consensus 228 --~~-~~---~~~---~----~~~~~~~~~~---------~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l 285 (1188)
.. +. .+. . ....+....+ -......+++-+..|.-..-+++..-+..-||..-+...+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tl 309 (511)
T TIGR00806 230 PGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTL 309 (511)
T ss_pred CCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHH
Confidence 00 00 000 0 0000000000 1112222344444444444444333122368888888899
Q ss_pred HHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHH-HHhhc
Q psy4738 286 LMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSL-KVNAL 364 (1188)
Q Consensus 286 ~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 364 (1188)
.+.+.++..|++-.++.+ .-.....+.....+..++..... .+.++..+..++......+..+.. .....
T Consensus 310 lga~~a~~ag~~~~~w~~--------~~~l~l~v~s~~~~gll~~m~~t-~~Iw~~Y~~yvlf~~~y~flitia~~~iA~ 380 (511)
T TIGR00806 310 LGAITSFIAGFVNIRWAR--------WSKLLIAVVSAIQAGLVFWMSQS-HDIWVLYVTYVLFRGIYQFLVPIATFQIAS 380 (511)
T ss_pred HHHHHHHHHHhhcCCchh--------hHHHHHHHHHHHHHHHhhhhhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988544321 13344455555555555444444 445554444444444444443433 34445
Q ss_pred ccCchhhHHHHHHHHHHHhhhhhhhhHHH
Q psy4738 365 DLSPNYAGTLMAIVNGIGAISGIISPYLI 393 (1188)
Q Consensus 365 ~~~p~~~g~~~g~~~~~~~lgg~i~p~l~ 393 (1188)
.+..+.-|...|+++++.-+-..+-..++
T Consensus 381 ~L~~~~~aLvFGiNtfvAl~LQtilT~iV 409 (511)
T TIGR00806 381 SLSKELCALVFGINTFVATALKTIITAVV 409 (511)
T ss_pred HhcccceEEEEecHHHHHHHHHHheEEEE
Confidence 56666678888888888776665554433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-22 Score=233.11 Aligned_cols=147 Identities=16% Similarity=0.193 Sum_probs=131.4
Q ss_pred CCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHH
Q psy4738 564 LLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFF 643 (1188)
Q Consensus 564 ~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l 643 (1188)
....|.+++|+|+|.++.+++.+.+.+++.+++++.|++.||+||||++..+.++.+++.+.+ .++ +.+.+++.|++
T Consensus 20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~--~~~~l~~~~~~ 96 (355)
T TIGR00896 20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAP--GTALLFAGTAL 96 (355)
T ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhc--cHHHHHHHHHH
Confidence 445688999999999999999999999999999999999999999999999999999988887 666 56779999999
Q ss_pred HHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHH
Q psy4738 644 EGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAIL 714 (1188)
Q Consensus 644 ~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~ 714 (1188)
+|++.+...+....++.|++| ++|+++.++++.+..+|..+++.+++.+.+..+.+||+.|.+.+.+.++
T Consensus 97 ~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 97 IGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL 166 (355)
T ss_pred HHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 999999988889999999996 6899999999999999999999999998876543499999887765444
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-22 Score=235.18 Aligned_cols=153 Identities=14% Similarity=0.120 Sum_probs=136.7
Q ss_pred cccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhh
Q psy4738 568 ESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLG 647 (1188)
Q Consensus 568 ~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig 647 (1188)
+.+++++|+++.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++.++++ +.+.++++|++.|.+
T Consensus 32 ~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~ 109 (395)
T PRK10054 32 IYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVN--NVTLVVLFFALINCA 109 (395)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999999999999999988 567788999999998
Q ss_pred cccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhccC
Q psy4738 648 EGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYS 725 (1188)
Q Consensus 648 ~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~~ 725 (1188)
.+...|....+..|.+|+++|++..|+.+....+|.++||.+++.+.+ .+ ||++|++.++..++..+...+.+|+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g--~~~~f~~~~~~~~i~~i~~~~~~~~ 184 (395)
T PRK10054 110 YSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QS--INLPFWLAAICSAFPLVFIQIWVQR 184 (395)
T ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc--cCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 888889999999999999999999999999999999999999999875 46 9999999888877765555554443
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-22 Score=222.52 Aligned_cols=341 Identities=16% Similarity=0.111 Sum_probs=245.1
Q ss_pred CCCcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhc
Q psy4738 65 PDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEG 144 (1188)
Q Consensus 65 ~~~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g 144 (1188)
...+++-+.++.|+++.++.+...+..|+.|.+.||+|+|..+++++.++.+.+++.++. ++++.++++|.+||+|.+
T Consensus 97 ~~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg--~sy~~l~vAR~LQgvgsA 174 (464)
T KOG3764|consen 97 EAISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG--NSYPMLFVARSLQGVGSA 174 (464)
T ss_pred hccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc--chhHHHHHHHHHhhhhHH
Confidence 346677789999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cchhHHHHHHhhccCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCC
Q psy4738 145 TTFPALNTLLAQWVPPTE-RGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 223 (1188)
Q Consensus 145 ~~~p~~~~li~~~~p~~~-Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~ 223 (1188)
+..+++.++++|.||+|+ |++++|+...+.++|..+||++||.+-+. .|-+.+|.+.+.+.++-..+-++.++++..
T Consensus 175 ~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~--~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 175 FADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF--AGKSAPFLVLAIVLLLDGALQLLVIEPTEM 252 (464)
T ss_pred HHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh--cCCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence 999999999999999755 89999999999999999999999999999 899999999999999988888888766544
Q ss_pred CCCCCCHhHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 224 SHPYISQREKEYLADTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFS 298 (1188)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~ls 298 (1188)
+++. .++.....+.++.... .....+.+.-.+-.-+|.++.+.+.-+.-+.|+...+..+...++..+.|.++
T Consensus 253 ~~~~--~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la 330 (464)
T KOG3764|consen 253 DPDS--TEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLA 330 (464)
T ss_pred Cccc--cccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHH
Confidence 3321 1111112222222211 11112222333334456777787774445899999999999999999999999
Q ss_pred HHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhh---hhHHHHhhcccC-c---hhh
Q psy4738 299 DYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFF---YPSLKVNALDLS-P---NYA 371 (1188)
Q Consensus 299 dr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-p---~~~ 371 (1188)
||++.. |......+.+..+.......+...-..+.+....++++....- .|.. ....|.. . +.-
T Consensus 331 ~k~~~~--------~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vY 401 (464)
T KOG3764|consen 331 DKYPHL--------RWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVY 401 (464)
T ss_pred HhcCch--------hHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhh-HHhcchhhcccccee
Confidence 999864 2222333333333333333333222222222222222222221 2222 2222221 1 256
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHhhccCCCccchHHHHHHHHHHHHHHHHH
Q psy4738 372 GTLMAIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFS 422 (1188)
Q Consensus 372 g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~ 422 (1188)
|...++......++.++||.++|.+.+..|..|... +.+...++-+.+.
T Consensus 402 GsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~--iig~~n~iyapvl 450 (464)
T KOG3764|consen 402 GSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMT--IIGILNLIYAPVL 450 (464)
T ss_pred eeHHHHHHHHHHHhhhccccccchheeehhHHHHHH--HHHHHHHHHHHHH
Confidence 899999999999999999999999999999655433 3333334444333
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-19 Score=215.34 Aligned_cols=360 Identities=13% Similarity=0.027 Sum_probs=236.5
Q ss_pred HHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhHhhHHH
Q psy4738 17 FLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGGL 96 (1188)
Q Consensus 17 ~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~ 96 (1188)
+.-++...+.......++|..- +|.|+|.+|+|++...... .+.++++|+
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l----------------------------~~~g~~~~~ig~~~~~~~~--~~~~~l~g~ 54 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWM----------------------------TVEGLDIQTIGFFSLVGQA--YIFKFLWAP 54 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHH----------------------------HHcCCCHHHHHHHHHHHHH--HHHHHHHHH
Confidence 3445666666667777778777 6779999999999777765 699999999
Q ss_pred hhccc-----CchH-HHHHHHHHHHHHHHHHHHhh-hccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHH
Q psy4738 97 LAQKF-----GGKH-TLGFGILSTAIFTLLTPFAA-RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 169 (1188)
Q Consensus 97 LaDr~-----Grk~-vl~~~lll~~v~sll~a~a~-~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi 169 (1188)
++||+ |||| ++..+.++.+++..+.++.. ..+++.+++..++.++..+...|+..+++.|++|+|||+++.++
T Consensus 55 ~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~ 134 (402)
T PRK11902 55 LMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAV 134 (402)
T ss_pred HHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHH
Confidence 99999 8775 78888888888888777762 24578888898889999899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCH---hHHHHHHHHHhhhhh-
Q psy4738 170 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQ---REKEYLADTIGCLAR- 245 (1188)
Q Consensus 170 ~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~---~~~~~~~~~~~~~~~- 245 (1188)
...+..+|.++++.+++.+.+.. .|||.+|++.+++.++..+. .+..||++++++..++ +.++...+.++++..
T Consensus 135 ~~~g~~~g~i~g~~l~~~l~~~~-~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 212 (402)
T PRK11902 135 KVLGYRLAMLVSGGLALWLADRV-LGWGNTYLLMAGLMLAGALT-TLWAPEPEVPARPPRSLGEAVVGPLRDFFSRRGAW 212 (402)
T ss_pred HHHHHHHHHHHHhHHHHHHHhcc-cCHHHHHHHHHHHHHHHHHH-HHhcCCCcccccccchhHHHHHHHHHHHHhCcCHH
Confidence 99999999999999999998851 49999999988887665544 3445554332211111 111122222222211
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHH
Q psy4738 246 ----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPF-LLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIA 320 (1188)
Q Consensus 246 ----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~-l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~ 320 (1188)
..++.+........+.+.++.+.+|++..+.++...... ++..++.++.+++.||+++|+ . ..++
T Consensus 213 ~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~---------~-l~~~ 282 (402)
T PRK11902 213 ALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYR---------S-LMLF 282 (402)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH---------H-HHHH
Confidence 112222222222345566777779999999999876554 568899999999999998643 1 1222
Q ss_pred HHHHHH---HHHHHHhhcchHHHHHHHHHH----HHHHHhhhhhHHHHhhcccCchhhHHHHHHHHHHHhhhhhhhhHHH
Q psy4738 321 SVGPAS---GVILASYAGCDQILVVTLFTV----GMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLI 393 (1188)
Q Consensus 321 ~~~~~~---~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~ 393 (1188)
...... .+.......++.+.......+ .....+...........+..| ++..+..+....+++.+++.+.
T Consensus 283 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~ 359 (402)
T PRK11902 283 GVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFS---ATQYALLSALASVGRVYVGPTS 359 (402)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHHHHHHHHHHH
Confidence 222221 122222322333333322222 222222334444444444444 3345666666677777677789
Q ss_pred HhhccCCCccchHHHHHHHHHHHHHHHHHh
Q psy4738 394 GILVPNNGVLSSLPFLLMWLTAIVAGWFSD 423 (1188)
Q Consensus 394 g~l~~~~G~~~~~~~~~~~~~~~~~~~~~~ 423 (1188)
|.+.|..|+ ...+...++++++..++..
T Consensus 360 G~l~~~~G~--~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 360 GYLVEAYGW--PGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHhCh--HHHHHHHHHHHHHHHHHHH
Confidence 999999884 4455555555555544443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-21 Score=232.96 Aligned_cols=152 Identities=19% Similarity=0.239 Sum_probs=130.9
Q ss_pred ccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhh-hCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhh
Q psy4738 569 SQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQK-FGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLG 647 (1188)
Q Consensus 569 ~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr-~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig 647 (1188)
-+++++|.+.++.+|+.+.|.....+..++.|+++|| +||||++..+.+++++++++++++++. ...+++.|+++|+|
T Consensus 40 yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~-~~ll~~~~~l~~ig 118 (489)
T PRK10207 40 FFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLK-PDLIFIALGTIAVG 118 (489)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHhc
Confidence 3456799999999999999999999999999999999 999999999999999999999998732 22356899999999
Q ss_pred cccchhHHHHHHHhccCCC--cchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q psy4738 648 EGTTFPAANQLLAAWIPKT--ERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGY 724 (1188)
Q Consensus 648 ~g~~~p~~~~~i~~~~~~~--~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~ 724 (1188)
.|...|...++++|++|++ +|++++++++.+.++|..+||.+++++.++.| ||+.|++.++ +++..++.+...+
T Consensus 119 ~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g--w~~~F~i~~i-~~~~~~~~~~~~~ 194 (489)
T PRK10207 119 NGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG--YSVTYNLCGA-GLIIALLVYFACR 194 (489)
T ss_pred cccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHH-HHHHHHHHHHHcc
Confidence 9999999999999999877 45889999999999999999999999999888 9999999654 4444333333333
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-20 Score=218.56 Aligned_cols=362 Identities=13% Similarity=0.060 Sum_probs=235.4
Q ss_pred HHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhHhhHH
Q psy4738 16 GFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGG 95 (1188)
Q Consensus 16 l~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~~~~G 95 (1188)
+...+++.+.....+.+.+|.... +++|+|+.+.|++.+.+.+++.+++++.|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~g~s~~~~g~~~~~~~l~~~i~~~~~G 59 (396)
T TIGR00882 7 FGLFFFLYFFIMSAYFPFFPIWLH---------------------------DVNGLSKTDTGIVFSCISLFSILFQPLFG 59 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------------HhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666665442 57899999999999999999999999999
Q ss_pred HhhcccCchHHHHHHHHHHHHHHHHHH---Hhh---hccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHH
Q psy4738 96 LLAQKFGGKHTLGFGILSTAIFTLLTP---FAA---RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 169 (1188)
Q Consensus 96 ~LaDr~Grk~vl~~~lll~~v~sll~a---~a~---~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi 169 (1188)
+++||+|||+.+..++...+++..... +.. .+.+..+++.|+++|++.+...|....+..|.. +++++..|.
T Consensus 60 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~ 137 (396)
T TIGR00882 60 LISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGK 137 (396)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccch
Confidence 999999999999987776655443221 110 012334567799999998888888887777643 344567778
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCC-------CHhHHHHHHHHHhh
Q psy4738 170 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYI-------SQREKEYLADTIGC 242 (1188)
Q Consensus 170 ~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~-------~~~~~~~~~~~~~~ 242 (1188)
......+|.+++|++++.+.+ .|||++|++.+.++++..++++...+|+|++++.. .+++.+...+.+++
T Consensus 138 ~~~~~~~g~~~g~~~~g~l~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 214 (396)
T TIGR00882 138 ARMFGCVGWALCASIAGILFS---IDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVANALGANASAFSLKLALELFRQ 214 (396)
T ss_pred hhhhcccHHHHHHHHHhhhhc---cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhcccccccCCCCHHHHHHHHcC
Confidence 888889999999999998865 48999999999988887776666666554422110 00111122222222
Q ss_pred hhh-----hHHHHHHHHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHH
Q psy4738 243 LAR-----NKIGHDWGLFMISADLPKYMKSVM---KFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRK 314 (1188)
Q Consensus 243 ~~~-----~~~~~~~~~~~~~~~lp~yl~~~~---g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~ 314 (1188)
+.. ..+.....+.....+.|.|+++.+ +.+....|...+...+...++....+++.||+++|+.
T Consensus 215 ~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~-------- 286 (396)
T TIGR00882 215 RKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNA-------- 286 (396)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh--------
Confidence 211 112222233345557888888765 4566778888888889999999999999999997643
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcc-cCchhhHHHHHH-HHHHHhhhhhhhhHH
Q psy4738 315 IFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALD-LSPNYAGTLMAI-VNGIGAISGIISPYL 392 (1188)
Q Consensus 315 ~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~g~~~g~-~~~~~~lgg~i~p~l 392 (1188)
..++....++.........+.... .....+.................+ .+++.+++..+. .+....+|+.++|.+
T Consensus 287 --l~~~~~l~~l~~~~~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l 363 (396)
T TIGR00882 287 --LLIAGTIMSVRIIGSSFATTALEV-VILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTL 363 (396)
T ss_pred --HHHHHHHHHHHHHHHHhcCChHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHh
Confidence 233333333333333333333323 222222222222222222223333 344667776665 678999999999999
Q ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHHH
Q psy4738 393 IGILVPNNGVLSSLPFLLMWLTAIVAGWFS 422 (1188)
Q Consensus 393 ~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~ 422 (1188)
.|++.|..| +...+...+++.++..+..
T Consensus 364 ~G~l~~~~G--~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 364 AGNMYDSIG--FQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHHHhcc--cHHHHHHHHHHHHHHHHHH
Confidence 999999887 4555566666555555543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-19 Score=217.32 Aligned_cols=341 Identities=11% Similarity=0.033 Sum_probs=224.2
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccCc-hHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhcc
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGG-KHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGT 145 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Gr-k~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~ 145 (1188)
+++|.|.+|.|++.+++.+++.++++++|.++||+|| |+++..+.++.++++.+.++. ++++.+++.|++.|++.+.
T Consensus 31 ~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 108 (418)
T TIGR00889 31 KTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQV--TTPAGMFPVLLANSLAYMP 108 (418)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHcc
Confidence 6799999999999999999999999999999999965 778889999998999898888 8999999999999999888
Q ss_pred chhHHHHHHhhc--------cCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhh
Q psy4738 146 TFPALNTLLAQW--------VPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL 217 (1188)
Q Consensus 146 ~~p~~~~li~~~--------~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~ 217 (1188)
..|...++..++ .....|.|..| .+|.++||.+++.+... ..|+ +|++.+++.++..+. .+.
T Consensus 109 ~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~--~~~~-~f~~~~~~~~~~~~~-~~~ 178 (418)
T TIGR00889 109 TIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIE--LSNI-QLYITAGSSALLGVF-ALT 178 (418)
T ss_pred HHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhccc--chhH-HHHHHHHHHHHHHHH-Hhc
Confidence 888777664322 22334556555 36888888888888433 3455 577777776665544 445
Q ss_pred cccCCCCCCCCCHhHHHH----HHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHH
Q psy4738 218 CYNDPASHPYISQREKEY----LADTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFS--------IAKNGVLS 280 (1188)
Q Consensus 218 ~~~~p~~~~~~~~~~~~~----~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s--------~~~~g~l~ 280 (1188)
.||+|++++..+.+.++. ..+.++.... ..+...........+.|.|+++ .|.+ ....+...
T Consensus 179 ~~e~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~ 257 (418)
T TIGR00889 179 LPDIPVAKSTAKMSIKVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWM 257 (418)
T ss_pred CCCCCCCccccccCHHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHH
Confidence 666553322111111111 1111111111 2222223334455667888876 3433 46678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchH---HHHHHHHHHHHHHHhhhhh
Q psy4738 281 SLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQ---ILVVTLFTVGMAFMGFFYP 357 (1188)
Q Consensus 281 ~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 357 (1188)
+...+...++.+..+++.||+++|+ ...++.+..++.+........+. ........+.....+...+
T Consensus 258 ~~~~i~~i~~~~~~g~l~dr~g~r~----------~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~ 327 (418)
T TIGR00889 258 SLSQFSEIFFILTIPFFLKRFGIKK----------VMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNI 327 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHH----------HHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998643 23444444444443333322211 2222222333333344445
Q ss_pred HHHHhhcccCc-hhhHHHHHHHH-HHHhhhhhhhhHHHHhhccCCCc----cchHHHHHHHHHHHHHHHHHhhhhhccc
Q psy4738 358 SLKVNALDLSP-NYAGTLMAIVN-GIGAISGIISPYLIGILVPNNGV----LSSLPFLLMWLTAIVAGWFSDYLVSKNI 430 (1188)
Q Consensus 358 ~~~~~~~~~~p-~~~g~~~g~~~-~~~~lgg~i~p~l~g~l~~~~G~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (1188)
.......+..| +.||++.|+.+ ....+|++++|.+.|.+.|..|. .+...+...+++.+++.+......+++.
T Consensus 328 ~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 328 SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 55555555554 88999999997 56789999999999999998763 3445566565555555555444444433
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=231.71 Aligned_cols=140 Identities=22% Similarity=0.357 Sum_probs=115.0
Q ss_pred chhhhhHHHH--HHHHHH---HHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccch------hHHHHHHHHHH
Q psy4738 577 DETTQGLILG--SFYWGY---VIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGP------VWLIVWRFFEG 645 (1188)
Q Consensus 577 s~~~~~~i~s--~~~l~~---~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~------~~l~~~R~l~G 645 (1188)
++++.+.+.+ .|..++ .+++++.|+++||+||||++..+.++++++++++++++++.. +.+++.|+++|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G 107 (394)
T TIGR00883 28 GDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQG 107 (394)
T ss_pred CChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHH
Confidence 3444444433 344433 468999999999999999999999999999999999985431 24899999999
Q ss_pred hhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh--------cCCCCchHHHHHHHHHHHHHHH
Q psy4738 646 LGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLK--------LTNNYWPVVFYLFGAVAILWFV 717 (1188)
Q Consensus 646 ig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~--------~~g~gWr~~F~i~~~~~~~~~~ 717 (1188)
++.+...+....++.|++|+++|++..++.+.+..+|.++++.++..+.. ..+ ||+.|++.+++.++...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~--w~~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 108 FSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWG--WRIPFLVSAVLVLIGLY 185 (394)
T ss_pred hhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccc--hHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877653 334 99999988776655443
Q ss_pred H
Q psy4738 718 V 718 (1188)
Q Consensus 718 ~ 718 (1188)
.
T Consensus 186 ~ 186 (394)
T TIGR00883 186 L 186 (394)
T ss_pred H
Confidence 3
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.8e-20 Score=214.71 Aligned_cols=302 Identities=15% Similarity=0.116 Sum_probs=212.7
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhccc-----CchHH-HHHHHHHHHHHHHHHHHhh-hccHHHHHHHHHHH
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKF-----GGKHT-LGFGILSTAIFTLLTPFAA-RQSANWLIALRFFE 139 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~-----Grk~v-l~~~lll~~v~sll~a~a~-~~s~~~lli~R~l~ 139 (1188)
+|+|+|.+|.++..+. .+.+.+ ++++|+++||+ ||||. ++.+.++.++..++.++.. ..+++.+...+++.
T Consensus 16 ~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~ 93 (356)
T TIGR00901 16 RSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLI 93 (356)
T ss_pred HHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH
Confidence 7899999999999755 555555 99999999998 89887 5677888888777777662 13566778888899
Q ss_pred HhhhccchhHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCC--------CChhHHHHHHHHHHHH
Q psy4738 140 GLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGD--------WPEIFYLFGILGVLWF 211 (1188)
Q Consensus 140 Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~g--------Wr~~F~i~g~i~li~~ 211 (1188)
|++.+...|+..+++.|++|+|||+++.++...+..+|.++++++++.+.+. .| ||.+|++.++..++..
T Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~--~g~~~~~~~~wr~~f~i~ai~~l~~~ 171 (356)
T TIGR00901 94 AFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASP--EFANTGLITLWGYIFFWTALLILPGL 171 (356)
T ss_pred HHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhh--cccccccccccHHHHHHHHHHHHHHH
Confidence 9998999999999999999999999999999999999999999999999988 67 9999999988777755
Q ss_pred HHHhhhcccCCCCCCCCCHhHH---HHHHHHHhhhh---h-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Q psy4738 212 VAWCFLCYNDPASHPYISQREK---EYLADTIGCLA---R-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLS 280 (1188)
Q Consensus 212 il~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~ 280 (1188)
+..++..||++++++..+++++ +...+..+++. . ..+......+....++|.|+++ +|++..+.+...
T Consensus 172 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~ 250 (356)
T TIGR00901 172 LVTLFLAKEPQEDASVPKPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVA 250 (356)
T ss_pred HHHHHhccCCCcccccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHh
Confidence 5555555664332211111111 11222222211 1 2333455667788899999998 899999999888
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhh---c-------chHHHHHHHHHHHH
Q psy4738 281 SLPF-LLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYA---G-------CDQILVVTLFTVGM 349 (1188)
Q Consensus 281 ~~~~-l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~---~-------~~~~~~~~~~~~~~ 349 (1188)
.... +...++.++.+++.||+++|+. ..++.+..+......... . .+.+.......+..
T Consensus 251 ~~~~~~~~~~g~~~~g~l~~r~g~~~~----------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (356)
T TIGR00901 251 KINGLLGAILGGLIGGIIMQPLNILYA----------LLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEA 320 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHH----------HHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHH
Confidence 7655 6778999999999999996432 222333333322222221 1 12233333444445
Q ss_pred HHHhhhhhHHHHhhccc-CchhhHHHHHHHHHHHh
Q psy4738 350 AFMGFFYPSLKVNALDL-SPNYAGTLMAIVNGIGA 383 (1188)
Q Consensus 350 ~~~~~~~~~~~~~~~~~-~p~~~g~~~g~~~~~~~ 383 (1188)
+..+...+.......+. +++++|+..|+.+...+
T Consensus 321 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 321 VTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 55555666666666665 45889999999887764
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-19 Score=216.94 Aligned_cols=326 Identities=12% Similarity=0.080 Sum_probs=227.7
Q ss_pred ccCChhhHHHHHHHHHHHHHHhHhhHHHhhcc-cCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccch
Q psy4738 69 FDWDEKTQGLILSAFYWGYVIMHIPGGLLAQK-FGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTF 147 (1188)
Q Consensus 69 ~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr-~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~ 147 (1188)
+|+|..+.+++.+.|.+++.++++++|+++|| +|||+++..+.++.+++.++.+++ ++++.+++.|++.|++.|...
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~--~~~~~~~~~~~l~g~g~g~~~ 120 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS--IYPDLIFYGLGTIAVGSGLFK 120 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc--ccHhHHHHHHHHHHhcccccc
Confidence 89999999999999999999999999999999 899999999999999999999988 888899999999999999999
Q ss_pred hHHHHHHhhccCCCc---hhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhc---ccC
Q psy4738 148 PALNTLLAQWVPPTE---RGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLC---YND 221 (1188)
Q Consensus 148 p~~~~li~~~~p~~~---Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~---~~~ 221 (1188)
|+..++++|++|++| |+++.++.+.+.++|.++||++++++.++ .|||+.|++.++..++..+.+.+.. +|.
T Consensus 121 ~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~--~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~ 198 (475)
T TIGR00924 121 ANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN--YGYHVGFNLAAVGMVIGLLTFFAGRHMLRDI 198 (475)
T ss_pred CCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHHHcccccccC
Confidence 999999999999865 88899999999999999999999999998 8999999998754444333332222 122
Q ss_pred CCCCCCCCHhHHHHHH----------------------------------------------HHHh--hhhh-----hHH
Q psy4738 222 PASHPYISQREKEYLA----------------------------------------------DTIG--CLAR-----NKI 248 (1188)
Q Consensus 222 p~~~~~~~~~~~~~~~----------------------------------------------~~~~--~~~~-----~~~ 248 (1188)
|++++..++++++... +... ++.+ ..+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 278 (475)
T TIGR00924 199 GSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLF 278 (475)
T ss_pred CCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHH
Confidence 2222211111111000 0000 0001 001
Q ss_pred H---HHH-HHHHHHHHHHHHHHHHhCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHH
Q psy4738 249 G---HDW-GLFMISADLPKYMKSVMKFSIAK----NGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIA 320 (1188)
Q Consensus 249 ~---~~~-~~~~~~~~lp~yl~~~~g~s~~~----~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~ 320 (1188)
. ..| .+.-..+.+|.+.++..+.+... .+.+.+...+..++..++..++-.++.+|+.- .+...| ..++
T Consensus 279 ~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~-~~~~~k--~~~G 355 (475)
T TIGR00924 279 LEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKD-PTTPLK--FTLG 355 (475)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCC-CCcHHH--HHHH
Confidence 1 111 22223334566666654433222 67788888888888877766666666664221 111122 2445
Q ss_pred HHHHHHHHHHHHh--------hcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCc-hhhHHHHHHHHHHHhhhhhhhhH
Q psy4738 321 SVGPASGVILASY--------AGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGTLMAIVNGIGAISGIISPY 391 (1188)
Q Consensus 321 ~~~~~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~lgg~i~p~ 391 (1188)
.+..+.++..... ...+.++.+....+...+-....|.......+..| +.||+.+|+......+|..+++.
T Consensus 356 ~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~ 435 (475)
T TIGR00924 356 MLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGY 435 (475)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444444332 12345555555566666666677777777777766 68999999999999999999999
Q ss_pred HHHhhccCCC
Q psy4738 392 LIGILVPNNG 401 (1188)
Q Consensus 392 l~g~l~~~~G 401 (1188)
+.....+..|
T Consensus 436 ~~~~~~~~~~ 445 (475)
T TIGR00924 436 LATFGAVPQG 445 (475)
T ss_pred HHHHHhcccc
Confidence 9888766654
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-19 Score=214.79 Aligned_cols=326 Identities=12% Similarity=0.105 Sum_probs=224.6
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcc----cCch-HHHHHHHHHHHHHHHHHHHhhhc----cHHHHHHHHH
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQK----FGGK-HTLGFGILSTAIFTLLTPFAARQ----SANWLIALRF 137 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr----~Grk-~vl~~~lll~~v~sll~a~a~~~----s~~~lli~R~ 137 (1188)
+++|+++.+.|++.++..+..++.+|+.|+++|| +||| +.+..+...++++.+++...... ....+++.++
T Consensus 28 ~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (437)
T TIGR00792 28 DVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYI 107 (437)
T ss_pred HccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 6799999999999999999999999999999998 6774 46778888888888888766211 1567788899
Q ss_pred HHHhhhccchhHHHHHHhhcc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhc-----cCCCCChhHHHHHHHHHHHH
Q psy4738 138 FEGLGEGTTFPALNTLLAQWV-PPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY-----TDGDWPEIFYLFGILGVLWF 211 (1188)
Q Consensus 138 l~Glg~g~~~p~~~~li~~~~-p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~-----~~~gWr~~F~i~g~i~li~~ 211 (1188)
+.+++.+...+...++..|.. +++||++..++...+..+|..+++.+.+.+... ...|||+.|++.++++++..
T Consensus 108 ~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~ 187 (437)
T TIGR00792 108 LLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSL 187 (437)
T ss_pred HHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHH
Confidence 999998887777788888887 578999999999888888887777666555431 01589999999999998888
Q ss_pred HHHhhhcccCCCCCCCCCHh---HHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy4738 212 VAWCFLCYNDPASHPYISQR---EKEYLADTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLP 283 (1188)
Q Consensus 212 il~~~~~~~~p~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~ 283 (1188)
++.++..+|++++++..+++ .++..++..+++.. ..+......+....+.+.|.++.++ +....+.+....
T Consensus 188 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 266 (437)
T TIGR00792 188 IICFFGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIA 266 (437)
T ss_pred HHHHcCCEecCCCCCcccccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHH
Confidence 77777777765332211111 11122222222111 2233333444444455666666565 456667777778
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhh
Q psy4738 284 FLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNA 363 (1188)
Q Consensus 284 ~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (1188)
.++.+++.++.++++||+++|+. ..++.....++.+.......+.....+...+...+.+...+......
T Consensus 267 ~i~~ii~~~~~~~l~~r~g~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 336 (437)
T TIGR00792 267 IVAGLIGVLLFPRLVKKFGRKIL----------FAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALV 336 (437)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHH----------HHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999997532 23333333333333333323333333333444444444455555555
Q ss_pred cccC--------chhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCcc
Q psy4738 364 LDLS--------PNYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVL 403 (1188)
Q Consensus 364 ~~~~--------p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~ 403 (1188)
.|.. ++.+|+..|+.+....+++.+++.+.|.+.+..|+.
T Consensus 337 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 337 ADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred hhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4442 456899999999999999999999999999887763
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.7e-21 Score=223.29 Aligned_cols=352 Identities=18% Similarity=0.202 Sum_probs=252.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhccc-chhHHHHHHHHHHhhcccchhHHHHHH
Q psy4738 581 QGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYM-GPVWLIVWRFFEGLGEGTTFPAANQLL 659 (1188)
Q Consensus 581 ~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~-~~~~l~~~R~l~Gig~g~~~p~~~~~i 659 (1188)
.+.+++.|.+|.++|++..|+++||+|||..+.++.++..++.++..++... +.++++++|++.|+..|......+.++
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl 141 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL 141 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4668899999999999999999999999999999999988888887765421 567799999999999999999999999
Q ss_pred HhccCCCcchhHHHHHHHHHHHHHHHHHHHHH--HhhhcCCCCchHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCh--
Q psy4738 660 AAWIPKTERGKVGAFVWAGIIMGTVISSSLTG--LLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFISQ-- 735 (1188)
Q Consensus 660 ~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g--~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~~~pe~~~~~~~-- 735 (1188)
.|..|++.||....+.+.+..+|..++..++- .+.+... |++.+....+++++..+...++ ||+|||+-.
T Consensus 142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~--W~~l~~~~~i~~~~~l~~l~~~----PESPk~Ll~~k 215 (485)
T KOG0569|consen 142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDL--WPYLLAFPLIPALLQLALLPFL----PESPKYLLIKK 215 (485)
T ss_pred hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcc--hHHHHHHHHHHHHHHHHHHhcC----CCCcchHHHHc
Confidence 99999999999999999999999999987775 2223333 9999999999999999888888 999999744
Q ss_pred hhhHHHHHHHhhhhhhhHHhhhhhcc----c-cccccCCCCchhhhhchhhHH--------HHHHHHhhhh-heeecCCC
Q psy4738 736 KEMDYLEETIGSLTRRKYVLRKHADK----Y-NRFQDLPPTPWKEMATSWPVI--------ALVITQVVLI-SLFYLPPT 801 (1188)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~ 801 (1188)
++++++++.++..+..+++..+.++. . ++..+..+.+++++++++... ....++..++ ++++|...
T Consensus 216 ~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~ 295 (485)
T KOG0569|consen 216 GDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTS 295 (485)
T ss_pred CCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHH
Confidence 45566666666665443222222211 1 112223566788888874321 2223444444 55555555
Q ss_pred cccccccchh--HHHHHHHHhhchhhHHHHhhcchHHHHhhhhhcccccccccchhHHHhhhccCcchhHHHHHHHHh-h
Q psy4738 802 PWKEMATSWP--VIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSATSMGPAVGIILASYSGCNKVLAVMFFAIG-M 878 (1188)
Q Consensus 802 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 878 (1188)
.+++...+.. .++...+... .....+++.++.||.||||++..++..+. +
T Consensus 296 i~~~aG~~~~~a~~an~~~g~v---------------------------~~~~t~~~~~lid~~gRRpLll~~~~~~~~~ 348 (485)
T KOG0569|consen 296 IFKTAGFTPEEAQYANLGIGIV---------------------------NLLSTLVSPFLIDRLGRRPLLLISLSLMAVA 348 (485)
T ss_pred HHHHcCCCHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 5554443333 1222222111 24456789999999999999999998876 4
Q ss_pred cccccccCcccccc-cCCChhhHHHHHHHHhcccccccccccccccccccccccccccCCCCCCCcchhHHHHhhhhhhc
Q psy4738 879 GFMGFYYPSIRINS-LDLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHGKQARYHWTNRAPYSFNFPLFKYVLRKHADKY 957 (1188)
Q Consensus 879 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1188)
.+........+... ++.++...++.+..+-.++.+
T Consensus 349 ~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G-------------------------------------------- 384 (485)
T KOG0569|consen 349 LLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIG-------------------------------------------- 384 (485)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcC--------------------------------------------
Confidence 44444443333333 456666778888877777776
Q ss_pred ccCCCCCCCch---hhhcccchhhHHhhHhhcccchhhhhhccc-chhhhccCccchhhHH
Q psy4738 958 NRFQDLPPTPW---KEMATSWPVIALVITQVGHDWGLFTIAADL-PKYFASNGLLSALPFL 1014 (1188)
Q Consensus 958 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-p~~~~~~g~~~~~~~~ 1014 (1188)
.-|+|| .|++.+..+.+........+|..+++..+. |...+..|-+..++++
T Consensus 385 -----~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~ 440 (485)
T KOG0569|consen 385 -----PGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFV 440 (485)
T ss_pred -----CCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHH
Confidence 457787 799999999988888888888888777666 6655555544444433
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-21 Score=242.12 Aligned_cols=245 Identities=17% Similarity=0.237 Sum_probs=186.4
Q ss_pred CCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhc-------------
Q psy4738 564 LLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAA------------- 630 (1188)
Q Consensus 564 ~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~------------- 630 (1188)
+...+.++++|+++..+.|++.+.|.++++++.++.++++||+||||++.+++++++++++++++.+
T Consensus 53 ~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~ 132 (633)
T TIGR00805 53 NSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVS 132 (633)
T ss_pred HhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccc
Confidence 3456889999999999999999999999999999999999999999999999999999999998874
Q ss_pred ------------------------------------ccchhHHHHHHHHHHhhcccchhHHHHHHHhccCCCcchhHHHH
Q psy4738 631 ------------------------------------YMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAF 674 (1188)
Q Consensus 631 ------------------------------------~~~~~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~ 674 (1188)
+..+..++++|+++|+|.+..++...+++.|++|+++|++.+++
T Consensus 133 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i 212 (633)
T TIGR00805 133 STGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGI 212 (633)
T ss_pred ccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHH
Confidence 11244678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCC--------------------CCchHHHHHHHHHHHHHHHHHHhhccCCCCCCcccC
Q psy4738 675 VWAGIIMGTVISSSLTGLLLKLTN--------------------NYWPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFIS 734 (1188)
Q Consensus 675 ~~~~~~~G~~~g~~l~g~l~~~~g--------------------~gWr~~F~i~~~~~~~~~~~~~~~~~~~pe~~~~~~ 734 (1188)
++++..+|+++|+++++.+.+.+. .+||..|++.++++++..+..+++.++.|++.++.+
T Consensus 213 ~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~ 292 (633)
T TIGR00805 213 LESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVN 292 (633)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccc
Confidence 999999999999999999886531 027777999998888877665555333343321111
Q ss_pred hhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeecCCCcccccccchhHHH
Q psy4738 735 QKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTPWKEMATSWPVIA 814 (1188)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1188)
.++.+ ++.... .+++ ... ......++. +...+++++|+.++.
T Consensus 293 ~~~~~--~~~~~~----------~~~~--~~~-~~~~~~~~~-----------------------~~~~~~Ll~n~~f~~ 334 (633)
T TIGR00805 293 VDVHE--TEKLEK----------SEDK--SRK-KNSDITKDF-----------------------PKIIKRLLCNPIYML 334 (633)
T ss_pred hhhhh--hhcccc----------cccc--cch-hhhhhHHHH-----------------------HHHHHHHHcCcHHHH
Confidence 00000 000000 0000 000 000000110 113456788999999
Q ss_pred HHHHHhhchhhHHHHhhcchHHHHhhhhhccc
Q psy4738 815 LVITQVGHDWGLFTIAADLPKYFASVIHFSVH 846 (1188)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~ 846 (1188)
..+..+....+.+++..++|+|+++.+|+++.
T Consensus 335 ~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~ 366 (633)
T TIGR00805 335 VILAQVIDSLAFNGYITFLPKYLENQYGISSA 366 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 99999999999999999999999999999875
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-18 Score=192.22 Aligned_cols=321 Identities=17% Similarity=0.203 Sum_probs=247.4
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccc
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTT 146 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~ 146 (1188)
+|+|.|.++.|++.+.-.+..++..+...+|++|+|.++.+..++++.++++++=... +.+.++..-.+.|.+.+..
T Consensus 40 ~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~---~~~~L~~gt~l~G~gIav~ 116 (395)
T COG2807 40 QDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG---GLPLLFLGTLLAGAGIAVI 116 (395)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhhHHHH
Confidence 7999999999999999999999999999999999999999999999999999887764 6788999999999999999
Q ss_pred hhHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCC
Q psy4738 147 FPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHP 226 (1188)
Q Consensus 147 ~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~ 226 (1188)
......+|.+.|| |+-+..+|.+.+..++|.++++.+.-.+.++. .|||....+-+.++++..++|+.-. ..+ +++
T Consensus 117 nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~-~gW~~aL~~WAl~allAl~~WlPq~-~r~-~~~ 192 (395)
T COG2807 117 NVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHS-GGWRGALGFWALLALLALLIWLPQA-LRE-QAA 192 (395)
T ss_pred HHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh-ccHHHHHHHHHHHHHHHHHHHhhhc-ccc-ccc
Confidence 9999999999996 57799999999999999999999999999883 4899999999999999888887663 111 111
Q ss_pred CCCH--hHHHHHH-HHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4738 227 YISQ--REKEYLA-DTIGCLAR-NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLV 302 (1188)
Q Consensus 227 ~~~~--~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~ 302 (1188)
..+. .++.... +....... ..-.++..+|....|+|.++.| .|+|..++|.+.+...+...+.++....+.+|..
T Consensus 193 ~~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~ 271 (395)
T COG2807 193 SIATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSK 271 (395)
T ss_pred ccccccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111 1111111 11111111 2234556899999999999999 8999999999999999999999999999999955
Q ss_pred ccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHH--hhcccCchhhHHHHHHHHH
Q psy4738 303 SKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKV--NALDLSPNYAGTLMAIVNG 380 (1188)
Q Consensus 303 ~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~~g~~~g~~~~ 380 (1188)
++ +...........++++.+.+.+.+..... .++++.+ .+..++.... ....-.|+..+..+|+.+.
T Consensus 272 n~---------r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G-~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg 340 (395)
T COG2807 272 NQ---------RPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLG-QGGAFPLALTLILLRSSDAAIAAALSGMAQG 340 (395)
T ss_pred cc---------chHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCc-cchHHHHHHHHHHhhcCChHHHHHHHHHhhh
Confidence 43 33334444444444544444444433333 2333333 3334444433 3334556889999999999
Q ss_pred HHhhhhhhhhHHHHhhccCCCccchH
Q psy4738 381 IGAISGIISPYLIGILVPNNGVLSSL 406 (1188)
Q Consensus 381 ~~~lgg~i~p~l~g~l~~~~G~~~~~ 406 (1188)
++++-++.+|+++|++.|..|++...
T Consensus 341 ~GYllAa~GP~l~G~lhDa~gsw~~~ 366 (395)
T COG2807 341 VGYLLAAFGPWLFGFLHDATGSWSAP 366 (395)
T ss_pred hhHHHHhhhhhhHhHHHHhcCChHHH
Confidence 99999999999999999999975543
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-18 Score=212.03 Aligned_cols=140 Identities=19% Similarity=0.202 Sum_probs=122.5
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcc-cCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhcc
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQK-FGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGT 145 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr-~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~ 145 (1188)
+++|+|.++.+++.+.|........+++|+++|| +|||+++..+.++++++..+++++. ++.+.+.+.|+++|++.|.
T Consensus 50 ~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~-~~~~~l~~~~~l~gig~g~ 128 (500)
T PRK09584 50 KQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG-HDAGIVYMGMATIAVGNGL 128 (500)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhhhc
Confidence 5799999999999998887767777899999999 5999999999999999999998862 3466778899999999999
Q ss_pred chhHHHHHHhhccCCCc--hhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHH
Q psy4738 146 TFPALNTLLAQWVPPTE--RGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 209 (1188)
Q Consensus 146 ~~p~~~~li~~~~p~~~--Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li 209 (1188)
..|...+++.|++|+++ |.++.++++.+..+|.++||++++++.++ .|||+.|++.++..++
T Consensus 129 ~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~--~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 129 FKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK--YGWSVAFALSVVGMLI 192 (500)
T ss_pred ccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHH
Confidence 99999999999998654 45688999999999999999999999998 8999999997754443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-18 Score=210.79 Aligned_cols=375 Identities=17% Similarity=0.130 Sum_probs=265.7
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHH
Q psy4738 5 CISQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFY 84 (1188)
Q Consensus 5 ~~~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~ 84 (1188)
+.+-|......++++..+..+......++++-++ .+..-|+...+++..+..
T Consensus 4 ~aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv----------------------------~~lt~S~~~valv~~a~~ 55 (524)
T PF05977_consen 4 FAPLRNRNFRRLWIAQLISNLGDWMQTVALAWLV----------------------------TQLTGSPLMVALVQAAST 55 (524)
T ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHhCCHHHHHHHHHHHH
Confidence 3444555556667777788887777788877777 355568999999999999
Q ss_pred HHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhh---hccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCC
Q psy4738 85 WGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA---RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPT 161 (1188)
Q Consensus 85 lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~---~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~ 161 (1188)
+...+..+++|.++||++|||+++.+-++.++.++..++.. ..+.+.+++.-++.|++.+...|+-.+++.+..|+|
T Consensus 56 LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~ 135 (524)
T PF05977_consen 56 LPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKE 135 (524)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh
Confidence 99999999999999999999999999888776655554431 246889999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHhHHHHHHHHHh
Q psy4738 162 ERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIG 241 (1188)
Q Consensus 162 ~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 241 (1188)
+..++.++.....++..++||.++|.+... .|=.+.|.+.++.-++.........++.++ ++..+++-.+.+.+.++
T Consensus 136 ~L~~A~al~s~~~niar~iGPalgG~Lva~--~G~~~~f~inalsfl~~i~~l~~~~~~~~~-~~~~~e~~~~~l~~G~r 212 (524)
T PF05977_consen 136 DLPAANALNSISFNIARIIGPALGGILVAF--FGAAAAFLINALSFLISILALLRWKPPPPP-SSLPRERFFSALREGLR 212 (524)
T ss_pred hHHHHHHHHHHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHccccccc-cccchhhhhhhHHHHHH
Confidence 999999999999999999999999999998 788899988876544433333333222221 11111111111111111
Q ss_pred hh---h------hhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHH
Q psy4738 242 CL---A------RNKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVI 312 (1188)
Q Consensus 242 ~~---~------~~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~ 312 (1188)
.. . ...+..+.........+|.+.++.+|.+....|++.+..+++.++|+++.+++.+|+.+++.
T Consensus 213 yv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~l------ 286 (524)
T PF05977_consen 213 YVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRL------ 286 (524)
T ss_pred HHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchh------
Confidence 10 0 02223333334455678999999999999999999999999999999999998888765422
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhc-ccCchhhHHHHHHHHHHHhhhhhhhhH
Q psy4738 313 RKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNAL-DLSPNYAGTLMAIVNGIGAISGIISPY 391 (1188)
Q Consensus 313 r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~g~~~g~~~~~~~lgg~i~p~ 391 (1188)
...+.+..+.+++.+....+.....+.++ +.+.+.........+..+ ..+++.+|++++++++....+..+|..
T Consensus 287 ----v~~~~~~~a~~~~~lal~~~~~~~~~~l~-l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsl 361 (524)
T PF05977_consen 287 ----VLLASLLFALALLLLALSPSFWLALIALF-LAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSL 361 (524)
T ss_pred ----hHHHHHHHHHHHHHHhcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555443333333333 333343444444444444 455588999999999999999999999
Q ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHHHh
Q psy4738 392 LIGILVPNNGVLSSLPFLLMWLTAIVAGWFSD 423 (1188)
Q Consensus 392 l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~~ 423 (1188)
+.|.+.|..|.... +.+.++..++..++..
T Consensus 362 l~G~la~~~g~~~a--l~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 362 LWGFLADHFGVRTA--LLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHhCHHHH--HHHHHHHHHHHHHHHH
Confidence 99999999885443 3444444444444433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.5e-20 Score=222.43 Aligned_cols=161 Identities=15% Similarity=0.099 Sum_probs=136.1
Q ss_pred cccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcc----cchhHHHHHH
Q psy4738 566 PEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAY----MGPVWLIVWR 641 (1188)
Q Consensus 566 a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~----~~~~~l~~~R 641 (1188)
..+.+++++|+|.++.+++.+. ...++.++++.|++.||+|||+++.++.+++++++++++++.+ .+.+++++.|
T Consensus 49 ~s~~L~~~lgls~~~l~~i~sv-g~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r 127 (591)
T PTZ00207 49 ISGAMQARYNLTQRDLSTITTV-GIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYN 127 (591)
T ss_pred HHHHHHHHhCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHH
Confidence 3477899999999999999887 4566788889999999999999999999999999999999721 2678899999
Q ss_pred HHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHh
Q psy4738 642 FFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLF 721 (1188)
Q Consensus 642 ~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~ 721 (1188)
+++|+|++..++.+...+.+||| ++||++.|+..++.++|+++.+.+...+.+ .+ |++.|++.+++++++.+++..
T Consensus 128 ~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~--~~~~fl~l~vl~~vv~ll~~~ 203 (591)
T PTZ00207 128 GLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DN--TSAYFFFLMSFALVVGILAIV 203 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--HHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999996 789999999999999999864444444433 34 999999999999998888877
Q ss_pred hccCCCCCCcc
Q psy4738 722 IGYSEPGSNPF 732 (1188)
Q Consensus 722 ~~~~~pe~~~~ 732 (1188)
++++.| .+++
T Consensus 204 ~vr~p~-~~~~ 213 (591)
T PTZ00207 204 FMRLPP-FHLT 213 (591)
T ss_pred heeCCc-chhh
Confidence 776653 4443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.5e-20 Score=218.55 Aligned_cols=155 Identities=21% Similarity=0.217 Sum_probs=136.0
Q ss_pred CcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhc-ccchhHHHHHHHH
Q psy4738 565 LPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAA-YMGPVWLIVWRFF 643 (1188)
Q Consensus 565 ~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~-~~~~~~l~~~R~l 643 (1188)
+..|.+++++|+++.+.+++.+.+.+++.++.++.|++.||+|||+++..++++++++.++...+. ..+++++++.|++
T Consensus 24 ~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l 103 (410)
T TIGR00885 24 PMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFI 103 (410)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 345888999999999999999999999999999999999999999999999999999998865432 2256789999999
Q ss_pred HHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcC------------------------CC
Q psy4738 644 EGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLT------------------------NN 699 (1188)
Q Consensus 644 ~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~------------------------g~ 699 (1188)
.|+|.|...+..+.++.+..|+++|+++.++.+...++|..+||.+++.+.... ..
T Consensus 104 ~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (410)
T TIGR00885 104 LTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLA 183 (410)
T ss_pred HHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999885321 01
Q ss_pred CchHHHHHHHHHHHHHHHHH
Q psy4738 700 YWPVVFYLFGAVAILWFVVW 719 (1188)
Q Consensus 700 gWr~~F~i~~~~~~~~~~~~ 719 (1188)
+||++|++.+.+.++..+..
T Consensus 184 ~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 184 SVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 39999999988777665444
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-18 Score=193.82 Aligned_cols=350 Identities=16% Similarity=0.136 Sum_probs=258.8
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhH
Q psy4738 12 LGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMH 91 (1188)
Q Consensus 12 i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~ 91 (1188)
..+++...+++-.+......+.+|.+. +.||++..|.++++.+|+.||.++.
T Consensus 14 ~~v~~t~lFfl~G~~~~l~diLip~l~----------------------------~~f~ls~~~a~liqfaff~gYf~~~ 65 (422)
T COG0738 14 AFVLLTSLFFLWGFITCLNDILIPHLK----------------------------EVFDLTYFEASLIQFAFFGGYFIMS 65 (422)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHH----------------------------HHhCccHHHHHHHHHHHHHHHHHHh
Confidence 344445555666666777788888888 6899999999999999999999999
Q ss_pred hhHHHhhcccCchHHHHHHHHHHHHHHHHHHHh-hhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHH
Q psy4738 92 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA-ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 170 (1188)
Q Consensus 92 ~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a-~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~ 170 (1188)
+|.|++.+|+|.|+-++.++.++++++.+..-+ ...++..+++.-++.|.|.+..-+++..+++...|+++..+.+++.
T Consensus 66 lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~ 145 (422)
T COG0738 66 LPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLA 145 (422)
T ss_pred ccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHH
Confidence 999999999999999999999999998887433 2367889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc-----------------CCCCChhHHHHHHHHHHHHHHHhhhc-ccCCCCCCCCCHhH
Q psy4738 171 FAGNQIGTVFSSFLSGFLLKYT-----------------DGDWPEIFYLFGILGVLWFVAWCFLC-YNDPASHPYISQRE 232 (1188)
Q Consensus 171 ~~~~~lG~~ig~~lgg~l~~~~-----------------~~gWr~~F~i~g~i~li~~il~~~~~-~~~p~~~~~~~~~~ 232 (1188)
+..+++|.+++|++++.+..+. -..||++|...+...++..+...... ||.++..+...++.
T Consensus 146 q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~~ 225 (422)
T COG0738 146 QAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGASG 225 (422)
T ss_pred HHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccccc
Confidence 9999999999999999998720 03599999888877776666555443 44333332222211
Q ss_pred HHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q psy4738 233 KEYLADTIGCL-----ARNKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIF 307 (1188)
Q Consensus 233 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l 307 (1188)
.....+..+.+ ....|+....-.....|++.|+.+..|.+..+.....+....+.++|++++.++..|+...+
T Consensus 226 ~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k-- 303 (422)
T COG0738 226 SAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEK-- 303 (422)
T ss_pred cchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH--
Confidence 11111111111 11555555566778899999999989999999999999999999999999999988887533
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCchhhHHHHHHHHHHHhhhhh
Q psy4738 308 SVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGI 387 (1188)
Q Consensus 308 ~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~lgg~ 387 (1188)
.....+...... ++.....+. .+.+......+.+++.++|.......+.-|++. ...|..-.+.-+||+
T Consensus 304 -------~Laf~a~~~ill-~~~~~l~~g--~v~~~~l~~ig~F~simfPTIfslal~~l~~~t-s~~s~~l~maivGGA 372 (422)
T COG0738 304 -------YLAFYALIAILL-LLAVALIGG--VVALYALFLIGLFNSIMFPTIFSLALKNLGEHT-SVGSGLLVMAIVGGA 372 (422)
T ss_pred -------HHHHHHHHHHHH-HHHHHHhcC--hHHHHHHHHHHHHhHHHHHHHHHHHHhccCccc-cccceeeeeheecch
Confidence 222222222222 222222222 344444555566667777777666666555443 334445567788999
Q ss_pred hhhHHHHhhccCCCc
Q psy4738 388 ISPYLIGILVPNNGV 402 (1188)
Q Consensus 388 i~p~l~g~l~~~~G~ 402 (1188)
+.|++.|++.|..|.
T Consensus 373 iiP~l~G~i~d~~g~ 387 (422)
T COG0738 373 IIPPLQGVIADMFGI 387 (422)
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999999999885
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-19 Score=216.73 Aligned_cols=151 Identities=19% Similarity=0.208 Sum_probs=126.8
Q ss_pred ccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHh
Q psy4738 567 EESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGL 646 (1188)
Q Consensus 567 ~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gi 646 (1188)
.+.+..|+|- .++..|+.+.+.++.+++.++.|+|+|.||||.+++.+.++..+|++.++.++|.+. ++++-.+.|+
T Consensus 67 l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~--~iag~~l~Gv 143 (599)
T PF06609_consen 67 LPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNT--FIAGMVLYGV 143 (599)
T ss_pred HHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHH--HHHHHHHHHH
Confidence 4667788885 478899999999999999999999999999999999999999999999999996555 9999999999
Q ss_pred hcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhc
Q psy4738 647 GEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIG 723 (1188)
Q Consensus 647 g~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~ 723 (1188)
|.|... .....++|..|.|.|+...++...........+|.++..+....+ |||.|++..++..+..++.++++
T Consensus 144 gaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~--WRw~~~~~~i~~~i~~vl~~~fY 217 (599)
T PF06609_consen 144 GAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSG--WRWIFYIFIIWSGIALVLIFFFY 217 (599)
T ss_pred hhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCC--cchHHHHHHHHHHHHHHHHHHHh
Confidence 976665 456668999999999988887776666666678888877766556 99999999998777655544443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.5e-20 Score=215.71 Aligned_cols=137 Identities=15% Similarity=0.029 Sum_probs=115.3
Q ss_pred ccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHH----HHHHHHHHHHHHHhhhhcccchhHHHHHHH
Q psy4738 567 EESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTL----GFGILSTAIFTILTPMAAYMGPVWLIVWRF 642 (1188)
Q Consensus 567 ~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l----~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~ 642 (1188)
.|.+.+|+|.|.+++|++.+.+.++..++++++|+++||+|||+.. ..+..++.+ ..++.++ +.|++++.|+
T Consensus 27 l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~--~~~~l~~~~~ 102 (382)
T TIGR00902 27 FPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAH--NAWLLFIAIG 102 (382)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhh--hHHHHHHHHH
Confidence 4667789999999999999999999999999999999999985433 333333332 2344566 6788999999
Q ss_pred HHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHH
Q psy4738 643 FEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAV 711 (1188)
Q Consensus 643 l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~ 711 (1188)
++|.+.+...|...++..++ ++||++..|......++|.+++|++++.+.+..| ||+.|++....
T Consensus 103 l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g--~~~~f~~~~~~ 167 (382)
T TIGR00902 103 LFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD--EQNILAILTAG 167 (382)
T ss_pred HHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC--hhHHHHHHHHH
Confidence 99999999999999987765 5789999999999999999999999999999988 99999987655
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-20 Score=248.52 Aligned_cols=207 Identities=16% Similarity=0.133 Sum_probs=149.3
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHH---HHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhcccchhHH
Q psy4738 579 TTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGF---GILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAA 655 (1188)
Q Consensus 579 ~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~---~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g~~~p~~ 655 (1188)
...++..++|.+.+.+++++.|+++||+|||+++.. +.+.+.+..+.+...+ +.++++++|+++|++.+...|+.
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~--s~~~l~~~~~l~gi~~a~~~p~~ 129 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLN--SVPLLFAALFLMGIHSALFGPIK 129 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHhhchHH
Confidence 457888999999999999999999999999997533 3333344444444445 67889999999999999999999
Q ss_pred HHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCh
Q psy4738 656 NQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFISQ 735 (1188)
Q Consensus 656 ~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~~~pe~~~~~~~ 735 (1188)
.+++.+++|+++|++++|+.+++.++|.++||+++|++.+..+ ||+.|+..++..++..+.. +.+|+++++++....
T Consensus 130 ~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 206 (1140)
T PRK06814 130 YSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGN--FVILVALLMGIAVLGWLAS-LFIPKTGNAAPDLKI 206 (1140)
T ss_pred HHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHHH-hhCCCCCCCCCCCee
Confidence 9999999999999999999999999999999999999999887 9999955555555444444 344443322211111
Q ss_pred hhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeecCCCcccccccchhHHHH
Q psy4738 736 KEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTPWKEMATSWPVIAL 815 (1188)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1188)
++ ....+.. . .++...+++.++..
T Consensus 207 ~~-~~~~~~~-------------------------~------------------------------~~~~~~~~~~~~~~ 230 (1140)
T PRK06814 207 DR-NIIRSTI-------------------------T------------------------------LLKYAKADKRIWLA 230 (1140)
T ss_pred cc-chHHHHH-------------------------H------------------------------HHHHHhcCchHHHH
Confidence 00 0000000 0 12223455666666
Q ss_pred HHHHhhchhhHHHHhhcchHHHHhhhhhccc
Q psy4738 816 VITQVGHDWGLFTIAADLPKYFASVIHFSVH 846 (1188)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~ 846 (1188)
.+..+........+..++|.|+++.+|.++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~ 261 (1140)
T PRK06814 231 ILGISWFWLVGAVVLSQLPLLAKETLGGDEN 261 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHcCCchH
Confidence 6666666666667777999999998888764
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-18 Score=209.76 Aligned_cols=381 Identities=14% Similarity=0.102 Sum_probs=237.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHH
Q psy4738 246 NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPA 325 (1188)
Q Consensus 246 ~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~ 325 (1188)
..++...+......++|.|+++.+|+|..+.|++.+...+...+++++.|+++||+++|+. . .++....+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~---------~-~~~~~~~~ 87 (420)
T PRK09528 18 FFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKH---------L-LWIISGLL 87 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH---------H-HHHHHHHH
Confidence 3455555667788999999999999999999999999999999999999999999997542 1 11111111
Q ss_pred HHHHHH-HhhcchHH--HHHHHHHHHHHHHhhhhh----HHHHhhcccCchhhHHHHHHHHHHHhhhhhhhhHHHHhhcc
Q psy4738 326 SGVILA-SYAGCDQI--LVVTLFTVGMAFMGFFYP----SLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVP 398 (1188)
Q Consensus 326 ~~l~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~ 398 (1188)
.+.... .....+.. ........+....+.... .......+ .++.+|...|..+...++|..++|.+.|.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 166 (420)
T PRK09528 88 VLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-VSRRSGFEYGRARMWGSLGWALCAFIAGILFN 166 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-HHhhccccchhhHHhhhHHHHHHHHHHHHHHh
Confidence 111100 00000000 011111111111111111 11111111 23456778888999999999999999999987
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhHhhhhhccccchhhhHhhhccCCchHHHHHHHHHHHhhhcc
Q psy4738 399 NNGVLSSLPFLLMWLTAIVAGWFSDYLVSKNIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGF 478 (1188)
Q Consensus 399 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~ 478 (1188)
. + +...+...++..++..+.....++++.++.+ .++.-...
T Consensus 167 ~-~--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----------------------------------- 207 (420)
T PRK09528 167 I-N--PQINFWLGSGSALILLVLLFFAKPDAPSTAK-VANALGAN----------------------------------- 207 (420)
T ss_pred c-C--chHhHHHHHHHHHHHHHHHhcccccccchhh-hccchhcc-----------------------------------
Confidence 4 2 3345555555544444444333332222111 00100000
Q ss_pred cccccceecccCCCcchhHHHHHHhhhhhccccccceeeeeeccCcccchhHHHHHHHHHHHHHhhhhheeecccccccc
Q psy4738 479 FYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNSTMLEWRLVFWISFGVIMITNVAYVFMGSGKIQSW 558 (1188)
Q Consensus 479 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~igp~i~~~l~~~~t~~~wr~vf~i~a~i~l~~~l~~l~~~~~~~q~w 558 (1188)
+ +++. ...... ..+ ++.-|..... ..............++
T Consensus 208 ----------~-~~~~---~~~~~~----------------~l~--~~~~~~l~l~-~~~~~~~~~~~~~~~~------- 247 (420)
T PRK09528 208 ----------A-SAVS---LKDALA----------------LLK--LPKFWFLVLY-VIGVACFYDVFDQQFP------- 247 (420)
T ss_pred ----------c-cccc---HHHHHH----------------Hcc--CCCeEeehHH-HHHHHHHHHHHHHHHH-------
Confidence 0 0000 000000 001 1111111111 1111111000000000
Q ss_pred CCCCCCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHH
Q psy4738 559 NEPRHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLI 638 (1188)
Q Consensus 559 ~~~~~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~ 638 (1188)
.-..+..++.+.+..+.+++.+.+.++..+++++.|++.||+|||+.+..+.++.+++.++.++++ +.++++
T Consensus 248 ------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~ 319 (420)
T PRK09528 248 ------NFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFAT--GPLEVS 319 (420)
T ss_pred ------HHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcc--cHHHHH
Confidence 000111123355667889999999999999999999999999999999999999999988888888 567799
Q ss_pred HHHHHHHhhcccchhHHHHHHHhccCCCcchhHHHH-HHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHH
Q psy4738 639 VWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAF-VWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFV 717 (1188)
Q Consensus 639 ~~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~-~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~ 717 (1188)
+.+++.|++.+...+....++.|.+|++.|++..+. ++....+|.+++|.++|++.+..| ||..|++.+++.++..+
T Consensus 320 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G--~~~~f~~~~~~~~i~~~ 397 (420)
T PRK09528 320 ILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG--FQGTYLILGGIVLLFTL 397 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHHHHHH
Confidence 999999999998889999999999999999988765 677889999999999999999888 99999999888877766
Q ss_pred HHHhhccCC
Q psy4738 718 VWLFIGYSE 726 (1188)
Q Consensus 718 ~~~~~~~~~ 726 (1188)
+.++.++++
T Consensus 398 ~~~~~~~~~ 406 (420)
T PRK09528 398 ISVFTLSGD 406 (420)
T ss_pred HHHHHhcCC
Confidence 666665443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.7e-20 Score=247.23 Aligned_cols=148 Identities=14% Similarity=0.143 Sum_probs=120.5
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhh---hcccchhHHHHHHHHHHhhcccchhH
Q psy4738 578 ETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPM---AAYMGPVWLIVWRFFEGLGEGTTFPA 654 (1188)
Q Consensus 578 ~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~---a~~~~~~~l~~~R~l~Gig~g~~~p~ 654 (1188)
....+++.++|.+++.++++++|+++||+|||++++.+.++..+..+++.+ ++ +++.++++|+++|++.+...|+
T Consensus 46 ~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~ 123 (1146)
T PRK08633 46 VILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLG--WFWLAFAVTFLLGAQSAIYSPA 123 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHhhchH
Confidence 445799999999999999999999999999999999998776666655443 45 5778999999999999999999
Q ss_pred HHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc--------CCCCchHHHHHHHHHHHHHHHHHHhhccCC
Q psy4738 655 ANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKL--------TNNYWPVVFYLFGAVAILWFVVWLFIGYSE 726 (1188)
Q Consensus 655 ~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~--------~g~gWr~~F~i~~~~~~~~~~~~~~~~~~~ 726 (1188)
..+++.|++|+++|++++|+..++..+|.++|+.+++++.+. .+ +|+|.+.+..+...+..++..+.+|+.
T Consensus 124 ~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1146)
T PRK08633 124 KYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEIL-GRIAPAGLVLLAVAVLGLIFAYRLPKV 202 (1146)
T ss_pred HHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccc-cchHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 999999999999999999999999999999999999999875 22 266666555544444444444445554
Q ss_pred CC
Q psy4738 727 PG 728 (1188)
Q Consensus 727 pe 728 (1188)
|+
T Consensus 203 ~~ 204 (1146)
T PRK08633 203 PA 204 (1146)
T ss_pred CC
Confidence 43
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=209.71 Aligned_cols=157 Identities=17% Similarity=0.162 Sum_probs=139.2
Q ss_pred CCCCcccccccccCcchhh-hhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHH
Q psy4738 562 RHLLPEESQQYEFDWDETT-QGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVW 640 (1188)
Q Consensus 562 ~~~~a~~~i~~~~~~s~~~-~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~ 640 (1188)
..+...|.+++|+|+|++| .|.+.++|..+|+++++|.|+++||+|.|+++..+++.|++.+++.++++ +.+.+.+.
T Consensus 44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~--Sl~~L~i~ 121 (511)
T TIGR00806 44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT--SVWHMQLM 121 (511)
T ss_pred hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 3445668899999999999 99999999999999999999999999999999999999999999999998 67789999
Q ss_pred HHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHH--HHHHHHHH
Q psy4738 641 RFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGA--VAILWFVV 718 (1188)
Q Consensus 641 R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~--~~~~~~~~ 718 (1188)
|++.|+++|+.+ +...++.+|+|++||+++.|++.++..+|.++++++++++ ...| ||+-+.++-+ -+..+..+
T Consensus 122 R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll-~s~g--Wr~y~~Ln~Isl~s~~~a~~ 197 (511)
T TIGR00806 122 EVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL-VTLG--WISYSTLNIISLVFMTFSVF 197 (511)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC--chhHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999999999999999999994 4556 9998877644 22334444
Q ss_pred HHhhcc
Q psy4738 719 WLFIGY 724 (1188)
Q Consensus 719 ~~~~~~ 724 (1188)
+-+++|
T Consensus 198 ~a~~LP 203 (511)
T TIGR00806 198 LALFLK 203 (511)
T ss_pred HHHhCC
Confidence 555555
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=6e-19 Score=210.39 Aligned_cols=155 Identities=12% Similarity=0.021 Sum_probs=130.8
Q ss_pred cccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhh-----CChh-HHHHHHHHHHHHHHHhhhhc-ccchhHHH
Q psy4738 566 PEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKF-----GGKH-TLGFGILSTAIFTILTPMAA-YMGPVWLI 638 (1188)
Q Consensus 566 a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~-----Grr~-~l~~~~~~~~i~~ll~a~a~-~~~~~~l~ 638 (1188)
+.|..-+|.|.|.+|+|++...... .+.++++|+++||+ |||| ++..+.++.++.....++.+ +.+.+.++
T Consensus 21 ~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~ 98 (402)
T PRK11902 21 TLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLA 98 (402)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHH
Confidence 3456667789999999999777765 59999999999999 8876 78888999988888888774 23567789
Q ss_pred HHHHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCchHHHHHHHHHHHHHHH
Q psy4738 639 VWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKL-TNNYWPVVFYLFGAVAILWFV 717 (1188)
Q Consensus 639 ~~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~-~g~gWr~~F~i~~~~~~~~~~ 717 (1188)
+..++.+++.+...|...+++.|++|+|||+++.++...+..+|.++++.+++.+.+. .| ||..|++.+++.++..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g--w~~~f~i~a~~~l~~~l 176 (402)
T PRK11902 99 GLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG--WGNTYLLMAGLMLAGAL 176 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC--HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999885 46 99999999887766554
Q ss_pred HHHhhccC
Q psy4738 718 VWLFIGYS 725 (1188)
Q Consensus 718 ~~~~~~~~ 725 (1188)
.. +..||
T Consensus 177 ~~-~~~~e 183 (402)
T PRK11902 177 TT-LWAPE 183 (402)
T ss_pred HH-HhcCC
Confidence 43 33443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=7e-18 Score=201.87 Aligned_cols=160 Identities=11% Similarity=0.133 Sum_probs=134.0
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcc--cchhHHHHHHHHHHhhcccchhH
Q psy4738 577 DETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAY--MGPVWLIVWRFFEGLGEGTTFPA 654 (1188)
Q Consensus 577 s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~--~~~~~l~~~R~l~Gig~g~~~p~ 654 (1188)
+.++.+...+...++..+++++.|++.||+|||+++..+.++.++...+...+++ .+.+.+++.++++|++.+...+.
T Consensus 249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~ 328 (418)
T TIGR00889 249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS 328 (418)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999988777666431 12456788999999999999999
Q ss_pred HHHHHHhccCCCcchhHHHHHH-HHHHHHHHHHHHHHHHhhhcCC----CCchHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy4738 655 ANQLLAAWIPKTERGKVGAFVW-AGIIMGTVISSSLTGLLLKLTN----NYWPVVFYLFGAVAILWFVVWLFIGYSEPGS 729 (1188)
Q Consensus 655 ~~~~i~~~~~~~~rg~~~g~~~-~~~~~G~~~g~~l~g~l~~~~g----~gWr~~F~i~~~~~~~~~~~~~~~~~~~pe~ 729 (1188)
...++.|++|+++||+.+|+.+ ...++|.++||+++|.+.++.+ .|||++|++.+++.++..++.+++.+ |+
T Consensus 329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~---~~ 405 (418)
T TIGR00889 329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK---YS 405 (418)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC---Cc
Confidence 9999999999999999999997 6788999999999999998754 35999999999988887777766664 44
Q ss_pred CcccChhhhH
Q psy4738 730 NPFISQKEMD 739 (1188)
Q Consensus 730 ~~~~~~~~~~ 739 (1188)
++.++.+++|
T Consensus 406 ~~~~~~~~~~ 415 (418)
T TIGR00889 406 HNAIKVDDRD 415 (418)
T ss_pred ccCCCCcccc
Confidence 5544444444
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=210.11 Aligned_cols=368 Identities=18% Similarity=0.214 Sum_probs=278.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHH
Q psy4738 8 QRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGY 87 (1188)
Q Consensus 8 ~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~ 87 (1188)
.-|.+.+..+++....+-....+++..+.++ ++|+-+.++.+|+.++..-.+
T Consensus 43 ~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~----------------------------~~f~~s~~~~~~i~sl~~~~~ 94 (509)
T KOG2504|consen 43 WGWVVVFASFLVNLSTDGLINSFGLLFEELM----------------------------DYFGSSSSQIAWIGSLLLGVY 94 (509)
T ss_pred eeeeeeHhHHHHHHhhhcchheehhhHHHHH----------------------------HHhCCCccHHHHHHHHHHHHH
Confidence 3467777778888888888888888888888 789999999999999999999
Q ss_pred HHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHH-HHHHHHhhhccchhHHHHHHhhccCCCchhhH
Q psy4738 88 VIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIA-LRFFEGLGEGTTFPALNTLLAQWVPPTERGKI 166 (1188)
Q Consensus 88 ~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli-~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~ 166 (1188)
.++.|+.+.+.||||.|.+.+.+.++.+++.++++++ ++++++++ .=++.|+|.|..+.....++..|| +++|+.+
T Consensus 95 ~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~--~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA 171 (509)
T KOG2504|consen 95 LLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFA--TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALA 171 (509)
T ss_pred HHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHH
Confidence 9999999999999999999999999999999999999 99987766 457789999999999999999888 5799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCC----------------------
Q psy4738 167 GSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPAS---------------------- 224 (1188)
Q Consensus 167 ~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~---------------------- 224 (1188)
.|+..++.++|..+-|++...+.+. +|||+.+++.+.+.+-.+.....+.|..++.
T Consensus 172 ~Gia~~GsG~G~~~~~~l~~~l~~~--~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (509)
T KOG2504|consen 172 TGIAVSGTGVGTVVFPPLLKYLLSK--YGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPV 249 (509)
T ss_pred HhhhhccCCcceeeHHHHHHHHHHH--hCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhcccccccccccccc
Confidence 9999999999999999999999999 9999999999999877777777777722221
Q ss_pred -------CC-CCC-------------H-----hHHHHHH----HHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHh
Q psy4738 225 -------HP-YIS-------------Q-----REKEYLA----DTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVM 269 (1188)
Q Consensus 225 -------~~-~~~-------------~-----~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~ 269 (1188)
.+ ..+ + .++.... +.++.... ...+...+++....++|.|.+ ..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~ 328 (509)
T KOG2504|consen 250 ELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK-SL 328 (509)
T ss_pred ccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hc
Confidence 00 000 0 0000000 11111100 333444567777788999998 59
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q psy4738 270 KFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGM 349 (1188)
Q Consensus 270 g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 349 (1188)
+++..+...+.+...+...+++++.|+++|+...+ ++....++.+..++..+........ ...+....+.+
T Consensus 329 g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~--------~~~~~~~~ll~~gl~~~~~p~~~~~-~~l~~~~~~fG 399 (509)
T KOG2504|consen 329 GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIR--------ALVLFLLTLLIAGLARLFLPFATTY-VGLIVFSILFG 399 (509)
T ss_pred CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccc--------hHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHH
Confidence 99999999999999999999999999999998743 3445555666655555444444333 33333333333
Q ss_pred HHHhhhhhHHHHhhcc-cCchhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCccchHHHHHHHHHHHHHH
Q psy4738 350 AFMGFFYPSLKVNALD-LSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAG 419 (1188)
Q Consensus 350 ~~~~~~~~~~~~~~~~-~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~ 419 (1188)
+..+...........| +..++-..+.|+...++.++..++|.+.|++.|..|.+... +...+++.++++
T Consensus 400 ~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~-f~~~g~~~~~s~ 469 (509)
T KOG2504|consen 400 FCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHA-FYFCGLCFLLSA 469 (509)
T ss_pred HHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeee-hhhcChHHHHHH
Confidence 3333334444334444 55688999999999999999999999999999999974443 333333333333
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.8e-19 Score=217.26 Aligned_cols=157 Identities=20% Similarity=0.337 Sum_probs=141.4
Q ss_pred ccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhccc
Q psy4738 571 QYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGT 650 (1188)
Q Consensus 571 ~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g~ 650 (1188)
.+++..+.....+..+.|++|..+|.+++|.++||+|||++++.++++..++.+++++++ +++.+++.|+++|++.++
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~--~~~~~~~~Rfl~G~~~~~ 187 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAP--NYWMFLIFRFLSGFFGSG 187 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHhhccc
Confidence 356677888899999999999999999999999999999999999999999999999999 567799999999999999
Q ss_pred chhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy4738 651 TFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSEPGSN 730 (1188)
Q Consensus 651 ~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~~~pe~~ 730 (1188)
.+..+..+++|++++++|+.+..+ ......++.+++..++++.+ + |||.+++..+++++..+.+++. ||+|
T Consensus 188 ~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~--Wr~~~~~~~~~~~~~~~~~~l~----~Es~ 258 (521)
T KOG0255|consen 188 PLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--D--WRWLFWIISIPSGLFLLLWFLP----PESP 258 (521)
T ss_pred hhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--h--HHHHHHHHHHHHHHHHHHHHcc----CcCh
Confidence 999999999999999999999999 88888888888888888887 5 9999999999999887774433 6899
Q ss_pred cccChhhh
Q psy4738 731 PFISQKEM 738 (1188)
Q Consensus 731 ~~~~~~~~ 738 (1188)
||+..+++
T Consensus 259 rwl~~~g~ 266 (521)
T KOG0255|consen 259 RWLLSKGR 266 (521)
T ss_pred HHHHHcCc
Confidence 99755444
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=206.67 Aligned_cols=142 Identities=18% Similarity=0.037 Sum_probs=115.1
Q ss_pred ccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCCh----hHHHHHHHHHHHHHHHhhhhcccchhHHHHHHH
Q psy4738 567 EESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGK----HTLGFGILSTAIFTILTPMAAYMGPVWLIVWRF 642 (1188)
Q Consensus 567 ~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr----~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~ 642 (1188)
.|...+|+|.|.++.|++.+.+.+++.+++++.|++.||+||| +.+.+...+.. ...+..++ +.|.+++.|+
T Consensus 27 l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~l~i~~~ 102 (382)
T PRK11128 27 WSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFA--VAFWFGAH--SFWLLFVAIG 102 (382)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHH--HHHHHhcc--cHHHHHHHHH
Confidence 3556688999999999999999999999999999999999994 33332222222 22233345 6788999999
Q ss_pred HHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH
Q psy4738 643 FEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWF 716 (1188)
Q Consensus 643 l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~ 716 (1188)
++|++.+...|...++..++ +++|++..+.......+|.++||++++.+.++.| ||..|++.+...++..
T Consensus 103 l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g--~~~~f~~~~~~~~~~~ 172 (382)
T PRK11128 103 LFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG--EQAILWILTAGVASML 172 (382)
T ss_pred HHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC--hhHHHHHHHHHHHHHH
Confidence 99999999999988888877 4678888999999999999999999999999888 9999998886544443
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.3e-19 Score=193.80 Aligned_cols=320 Identities=15% Similarity=0.101 Sum_probs=213.6
Q ss_pred CChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHH
Q psy4738 71 WDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPAL 150 (1188)
Q Consensus 71 ~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~ 150 (1188)
.+..-.|.+.|+|.++..++.+.+|.++||||||+++++|++..++..++.+.+ .|+..+++.|++.|+.-|- ...+
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S--~~F~afv~aR~l~Gi~kgn-l~v~ 141 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS--RNFAAFVLARFLGGIFKGN-LSVI 141 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhccCc-hHHH
Confidence 456667999999999999999999999999999999999999999999999999 9997777779999998665 5778
Q ss_pred HHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHH----HHHhhhcccCCCCCC
Q psy4738 151 NTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWF----VAWCFLCYNDPASHP 226 (1188)
Q Consensus 151 ~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~----il~~~~~~~~p~~~~ 226 (1188)
.++++|.+++|+|++.++.+..+.++|.++||.+||++.+..+..=+.+|.....+..+.. ....++.||+-..++
T Consensus 142 rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk 221 (451)
T KOG2615|consen 142 RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRK 221 (451)
T ss_pred HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchh
Confidence 8999999999999999999999999999999999999998311122344444333222221 223344555422111
Q ss_pred CCC----HhH-HHHHHHHHhhh--hh---------------------hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q psy4738 227 YIS----QRE-KEYLADTIGCL--AR---------------------NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGV 278 (1188)
Q Consensus 227 ~~~----~~~-~~~~~~~~~~~--~~---------------------~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~ 278 (1188)
..+ ..| .++..+..+.. .+ ..+..+..+-......+.+.++.+|++..+.|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~ 301 (451)
T KOG2615|consen 222 RNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGK 301 (451)
T ss_pred hcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhhee
Confidence 110 000 00000000000 00 222222233333444455556779999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhH
Q psy4738 279 LSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPS 358 (1188)
Q Consensus 279 l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (1188)
+.+..++.+.+......+..||.... -+.............++.+.....+..+........+.........
T Consensus 302 vl~~tGl~m~~~ql~~~~~l~~~~~~--------~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~L 373 (451)
T KOG2615|consen 302 VLSTTGLLMLVIQLALVPILPRYKGN--------IKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTCL 373 (451)
T ss_pred eeehhhHHHHHHHHhccccccccccc--------hhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHHH
Confidence 99998888888887777766665421 1222223333333344444444444444444444433333333444
Q ss_pred HHHhhcccCchhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCC
Q psy4738 359 LKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNNG 401 (1188)
Q Consensus 359 ~~~~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G 401 (1188)
........+++.||++.|+..+.+.++-++||.+.|.+.....
T Consensus 374 t~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~ 416 (451)
T KOG2615|consen 374 TSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQ 416 (451)
T ss_pred HHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEec
Confidence 4444445556899999999999999999999999998876543
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=8e-20 Score=205.31 Aligned_cols=400 Identities=16% Similarity=0.142 Sum_probs=253.4
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccc-----hhHHHHHHHHHHhhccc
Q psy4738 576 WDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMG-----PVWLIVWRFFEGLGEGT 650 (1188)
Q Consensus 576 ~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~-----~~~l~~~R~l~Gig~g~ 650 (1188)
..+...+.+..+-.+|..+||+..|+++||+|||+++...+++..++++++++....+ +++|...|++.|+|.|+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGG 160 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGG 160 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccC
Confidence 3456678888999999999999999999999999999999999999999888765322 46799999999999999
Q ss_pred chhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcC----CC---------CchHHHHHHHHHHHHHHH
Q psy4738 651 TFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLT----NN---------YWPVVFYLFGAVAILWFV 717 (1188)
Q Consensus 651 ~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~----g~---------gWr~~F~i~~~~~~~~~~ 717 (1188)
.||.+.++.+|...++.||...+.+-+.++.|...|.+++-.+...+ +. =||..|.+..+++++...
T Consensus 161 DYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly 240 (538)
T KOG0252|consen 161 DYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLY 240 (538)
T ss_pred CCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888877665321 11 299999999998888777
Q ss_pred HHHhhccCCCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheee
Q psy4738 718 VWLFIGYSEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFY 797 (1188)
Q Consensus 718 ~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1188)
....+ ||+++.....++|...+. .+..+.... ..+++...+....++.++...|..
T Consensus 241 ~Rl~M----~Et~~Y~al~~~~~~~a~-~d~~k~~~~-~~~~~~~~~~~~~~~~~~~~~F~~------------------ 296 (538)
T KOG0252|consen 241 FRLKM----PETARYTALVSKKLKQAA-GDMKKVLSV-DIEAESTAESDVPPPSNSFGLFSR------------------ 296 (538)
T ss_pred hhhcC----CcchhHHHHhhcCHhhhh-hcccccccc-ccchhhccccCCCCcccccchHHH------------------
Confidence 76666 777775311111111111 110000000 000000001111111111111100
Q ss_pred cCCCcccccccchhHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhcccccccccchhHHHhhhccCcchhHHHHHHHHh
Q psy4738 798 LPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSATSMGPAVGIILASYSGCNKVLAVMFFAIG 877 (1188)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (1188)
.+.+. .-+........++..+.+.|+.-......++. +|+.+.+
T Consensus 297 ----~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~------------------------------ 340 (538)
T KOG0252|consen 297 ----LFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSA------------------------------ 340 (538)
T ss_pred ----HHHHH-HHHHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCc------------------------------
Confidence 00000 11334555677788787777765444444432 2222221
Q ss_pred hcccccccCcccccccCCChhhHHHHHHHHhcccccccccccccccccccccccccccCCCCCCCcchhHHHHhhhhhhc
Q psy4738 878 MGFMGFYYPSIRINSLDLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHGKQARYHWTNRAPYSFNFPLFKYVLRKHADKY 957 (1188)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1188)
.+
T Consensus 341 ---------------------------------------------------~~--------------------------- 342 (538)
T KOG0252|consen 341 ---------------------------------------------------NT--------------------------- 342 (538)
T ss_pred ---------------------------------------------------ch---------------------------
Confidence 00
Q ss_pred ccCCCCCCCchhhhcccchhhHHhhHhhcccchhhhhhcccchhhhccCccchhhHHHHHHHHhhhchhhHHHHhhccch
Q psy4738 958 NRFQDLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASNGLLSALPFLFMWIFSQGAGCLSDFIVERQWFS 1037 (1188)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~~~~~~i~~~~~g~lsd~~~~r~~~~ 1037 (1188)
+.++++.-.-+ ..+..+....|..+...++|++ +
T Consensus 343 ----------~~~~~~vA~~~------------------------------~iia~~~~vPGyw~tv~~id~i---G--- 376 (538)
T KOG0252|consen 343 ----------YHELFKVAEGN------------------------------LIIAVCSTVPGYWFTVYFIDII---G--- 376 (538)
T ss_pred ----------HHHHHHHHHHH------------------------------HHHHHHccCCceeEEEEEeehh---h---
Confidence 01111111111 1111123334556677889999 5
Q ss_pred hHHHHHHHHHhhhhhhHHHHHhhhccCC---chHHHHHHHHHHhhhhcccc-ccccccccCCCCc-chhHHHHHhhhhhh
Q psy4738 1038 MTLTRKIFATAASMGPAVGIILASYSGC---NKVLAVMFFAIGMGFMGFYY-PSIRINSLDLSPN-YAATLMAIVNGLGA 1112 (1188)
Q Consensus 1038 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 1112 (1188)
||...+.++.+..+....+..... +......+..+..++..+.+ ...-+...|..|. .||+..|+....+-
T Consensus 377 ----Rk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK 452 (538)
T KOG0252|consen 377 ----RKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGK 452 (538)
T ss_pred ----hHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhcc
Confidence 556777777777666555543322 22333344444444433333 3344555566655 59999999999999
Q ss_pred hhhhhhhhhheeecCCCc--cchhHHHHHHHHHHHHHhhhhhheeccCccccC
Q psy4738 1113 VSGIFSAPLIGIMTPNST--MSEWRLVFWLTFIILAVTNLFYLVFGSAEIQPW 1163 (1188)
Q Consensus 1113 ~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1163 (1188)
.|++++......+.+... ..+.+.+|++.+++..++.+..+++.+.+++..
T Consensus 453 ~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~l 505 (538)
T KOG0252|consen 453 AGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKSL 505 (538)
T ss_pred chHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccccCH
Confidence 999999998888877321 235889999999999999999888876555543
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.4e-17 Score=191.60 Aligned_cols=363 Identities=13% Similarity=0.006 Sum_probs=238.4
Q ss_pred HHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHH--HHHHHHHHHHh
Q psy4738 13 GFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLI--LSAFYWGYVIM 90 (1188)
Q Consensus 13 ~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l--~s~~~lg~~i~ 90 (1188)
...++..++.+.+.-....+.+|... +|.|.|.++.|++ .+.....-.+.
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l----------------------------~~~g~~~~~iGl~~~~~l~~~~~~l~ 54 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLL----------------------------REDGAPLTALAFLPLVGLPWVVKFLW 54 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH----------------------------HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45566677888888888888888888 6789999999997 45666667677
Q ss_pred HhhH-HHhhcccCchHHHHHHHHH-HHHHHHHHH-Hhhhcc-HHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhH
Q psy4738 91 HIPG-GLLAQKFGGKHTLGFGILS-TAIFTLLTP-FAARQS-ANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI 166 (1188)
Q Consensus 91 ~~~~-G~LaDr~Grk~vl~~~lll-~~v~sll~a-~a~~~s-~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~ 166 (1188)
+|++ ++++||+||||..+..+.+ .+......+ +....+ ..+++..-++.++..+..-+..-++..|+.++++++..
T Consensus 55 ~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~ 134 (390)
T TIGR02718 55 APLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKG 134 (390)
T ss_pred HHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHH
Confidence 7777 5589999999986554432 221122222 211122 33445555666677777788888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHhHHHHHHHHHhhhhh-
Q psy4738 167 GSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLAR- 245 (1188)
Q Consensus 167 ~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~- 245 (1188)
.+....+..+|.++|+.+.+++.+. .|||.+|++.+.+.++..+..+++.+++|++++. .++++....+.++++..
T Consensus 135 ~~~~~~g~~lG~~~g~~~~~~l~~~--~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 211 (390)
T TIGR02718 135 NAVQIAGVMIGFFGGGAGTLVLFGK--FGQRPAFLLVACVPLASLVCVLWLKDRAVASPEA-PLARRASLFRFFRRPLAW 211 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHcCCCCcCcccc-chhhHHHHHHHHcCcCHH
Confidence 9999999999999999999999998 8999999999998887666665555544332211 11112222222222211
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHH
Q psy4738 246 ----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFL-LMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIA 320 (1188)
Q Consensus 246 ----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l-~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~ 320 (1188)
..++..........+.|.|++| .|++..+.|.+...... ...++.++.|++.||+++|+. . .++
T Consensus 212 ~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~---------l-~~~ 280 (390)
T TIGR02718 212 SLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRT---------F-ILG 280 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHH---------H-HHH
Confidence 3344444566677788999988 79999999999887764 666778999999999997432 2 222
Q ss_pred HHHH-HHHHHHHHhh----cchHHHHHHHHHHHHHHHhhhhhHHHHh-hcccCc-hhhHHHHHHHHHHHhhhhhhhhHHH
Q psy4738 321 SVGP-ASGVILASYA----GCDQILVVTLFTVGMAFMGFFYPSLKVN-ALDLSP-NYAGTLMAIVNGIGAISGIISPYLI 393 (1188)
Q Consensus 321 ~~~~-~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p-~~~g~~~g~~~~~~~lgg~i~p~l~ 393 (1188)
.... ...+...... ..+.........+.....+...+..... .....+ +.+|+.++..+...++|+.++|.+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~ 360 (390)
T TIGR02718 281 VGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIA 360 (390)
T ss_pred HHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 1111111111 1122222222233333344444443333 344455 7899999999999999999999999
Q ss_pred HhhccCCCccchHHHHHHHHHHHHHH
Q psy4738 394 GILVPNNGVLSSLPFLLMWLTAIVAG 419 (1188)
Q Consensus 394 g~l~~~~G~~~~~~~~~~~~~~~~~~ 419 (1188)
|.+.|..|+ ...+...+++.+++.
T Consensus 361 G~l~~~~G~--~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 361 GYLTDRFGY--AGGFLSGTVLAVLAI 384 (390)
T ss_pred HHHHHHHcc--HHHHHHHHHHHHHHH
Confidence 999998873 344444444444433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-17 Score=206.85 Aligned_cols=341 Identities=20% Similarity=0.182 Sum_probs=234.0
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccc
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTT 146 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~ 146 (1188)
+.++.+.....+..+.|++|..++.+++|+++||+|||++++.++++..++.++++++ +|++.++++|+++|++.++.
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a--~~~~~~~~~Rfl~G~~~~~~ 188 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA--PNYWMFLIFRFLSGFFGSGP 188 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHhhccch
Confidence 4556688888999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hhHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCC
Q psy4738 147 FPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHP 226 (1188)
Q Consensus 147 ~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~ 226 (1188)
...+..+++|++++++|+.++.+ ......++.++++.++++.+ +|||.+++..+++++..++ +++.+|+|+-..
T Consensus 189 ~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~----~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~ 262 (521)
T KOG0255|consen 189 LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR----DWRWLFWIISIPSGLFLLL-WFLPPESPRWLL 262 (521)
T ss_pred hHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHH-HHccCcChHHHH
Confidence 99999999999999999999999 88888889999999999976 5999999999998877666 555556654110
Q ss_pred CC-CHhHHHH------------------HHHH-----Hhhh---h-h---------------hHHHHHHHHHHHHHHHHH
Q psy4738 227 YI-SQREKEY------------------LADT-----IGCL---A-R---------------NKIGHDWGLFMISADLPK 263 (1188)
Q Consensus 227 ~~-~~~~~~~------------------~~~~-----~~~~---~-~---------------~~~~~~~~~~~~~~~lp~ 263 (1188)
.. +.+|... .... .... . . ......|..+....+.-.
T Consensus 263 ~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~ 342 (521)
T KOG0255|consen 263 SKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLS 342 (521)
T ss_pred HcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhh
Confidence 00 0000000 0000 0000 0 0 111111111122222222
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHH--HH
Q psy4738 264 YMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQI--LV 341 (1188)
Q Consensus 264 yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~--~~ 341 (1188)
+....+|.+....- ..............+...|+.+ ||.....+....+++++.......... +.
T Consensus 343 ~~~~~lg~~~~~~~---~~~~~~~~p~~~~~~~~~~~~g----------R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (521)
T KOG0255|consen 343 LNVSGLGGNIYLNF---TLSGLVELPAYFRNGLLLPEFG----------RRPPLFLSLFLAGIGLLLFGWLPDDLGGWLH 409 (521)
T ss_pred hhhhhcCchHHHHH---HHHHHHHhhHHHHHHHHHHHhC----------cHHHHHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 22222333333222 2223344555556677778876 566677777777777777666654433 56
Q ss_pred HHHHHHHHHHHhhhhhHHHHhhcccCc-hhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCccchHHHHHHHHHHHHHHH
Q psy4738 342 VTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGW 420 (1188)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~ 420 (1188)
.....++.++.+...........++.| ..|+.+.+..+....++++++|.+.-...... ....+...+....+.+.
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~---~~~~~~~~~~~~~l~~~ 486 (521)
T KOG0255|consen 410 WILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMF---PLLGLILFGWLALLLGL 486 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---ccchHHHHHHHHHHHHH
Confidence 666667777777666666777777777 68999999999999999999999986654421 22222334444555554
Q ss_pred HH-hhhhhcccc
Q psy4738 421 FS-DYLVSKNIF 431 (1188)
Q Consensus 421 ~~-~~~~~~~~~ 431 (1188)
+. ..+++.+..
T Consensus 487 ~~~~~lpet~~~ 498 (521)
T KOG0255|consen 487 LSLLLLPETKGK 498 (521)
T ss_pred HHHhcCcccCCC
Confidence 44 555544433
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-18 Score=184.68 Aligned_cols=374 Identities=17% Similarity=0.202 Sum_probs=273.6
Q ss_pred CccchHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHH
Q psy4738 4 GCISQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAF 83 (1188)
Q Consensus 4 ~~~~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~ 83 (1188)
++.+.++........++....+.....+.+.|... ..++.+..|..++.+..
T Consensus 71 gfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~----------------------------~~w~~s~~q~~llt~~v 122 (528)
T KOG0253|consen 71 GFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALD----------------------------EVWGPSEGQAPLLTLSV 122 (528)
T ss_pred CcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHH----------------------------hhhchhhhhhhHHHHHH
Confidence 56778888999999999999888888888888887 67889999999999999
Q ss_pred HHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCch
Q psy4738 84 YWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTER 163 (1188)
Q Consensus 84 ~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~R 163 (1188)
+.|+.++...+|.++|++|||+.+....++..+...+.+.+ +|+..++++|.+.|+|.|+ .|...++-.+.-|..+|
T Consensus 123 ~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~s--pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r 199 (528)
T KOG0253|consen 123 FLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGAS--PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHR 199 (528)
T ss_pred HhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCC--CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCC
Confidence 99999999999999999999999999999999999999999 9999999999999999999 89999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCC--------------
Q psy4738 164 GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYIS-------------- 229 (1188)
Q Consensus 164 g~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~-------------- 229 (1188)
...+-.. ..+.+|.++...+.-....+ +||||..+..+.... .....++..||+|+-.--..
T Consensus 200 ~~~~V~~-~~waig~v~ea~law~vm~~--~gwr~~l~~~~~pl~-~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiAr 275 (528)
T KOG0253|consen 200 WLLTVMS-FFWAIGQVFEALLAWGVMSN--FGWRYLLFTSSTPLM-FAARFLVWVYESPRFYLAKGDDYKALETLHKIAR 275 (528)
T ss_pred CcchhHH-HHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhHHH-HHHHHHhhcccCcchhhhcCChHHHHHHHHHHHH
Confidence 9888776 89999999999999999998 899999888874443 34455566777765211000
Q ss_pred -------------------HhHHHHHHHHHhhhhh-----------------------hHHHHHHHHHHHHHHHHHHHHH
Q psy4738 230 -------------------QREKEYLADTIGCLAR-----------------------NKIGHDWGLFMISADLPKYMKS 267 (1188)
Q Consensus 230 -------------------~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~lp~yl~~ 267 (1188)
++|.....+......+ ..|.....+|+........++.
T Consensus 276 mNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqs 355 (528)
T KOG0253|consen 276 MNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQS 355 (528)
T ss_pred hcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 0000000000000000 3344444556555444444432
Q ss_pred H-----------------hC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHH
Q psy4738 268 V-----------------MK--FSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGV 328 (1188)
Q Consensus 268 ~-----------------~g--~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l 328 (1188)
. .+ .+..+.-.=.....+..+.|.++.+++.||+|||+ ..+.+.+..++++
T Consensus 356 gd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKk----------TMal~l~~f~ifl 425 (528)
T KOG0253|consen 356 GDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKK----------TMALSLILFGIFL 425 (528)
T ss_pred cCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchh----------HHHHHHHHHHHHH
Confidence 2 11 11111111133446778889999999999999654 3556666666666
Q ss_pred HHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCc-hhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCccchHH
Q psy4738 329 ILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLSSLP 407 (1188)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~~~~ 407 (1188)
+.+....... ....+.+.+-.+....+...+++..+++| ..|+++.|....++++|+++.|.+. ... +...+++
T Consensus 426 fll~~c~~rn-~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~---e~s~sl~ 500 (528)
T KOG0253|consen 426 FLLTTCKTRN-AYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRA---ELSTSLP 500 (528)
T ss_pred HHHHHhcCcc-hhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHh---ccceeeh
Confidence 6554443322 33334444455555556667788888888 7899999999999999999999998 322 2336778
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q psy4738 408 FLLMWLTAIVAGWFSDYLVS 427 (1188)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~ 427 (1188)
..+.+.+++++++.+.+.+-
T Consensus 501 i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 501 IFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred HHHHHHHHHHHHHHheeeee
Confidence 88888888888887665544
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-19 Score=212.15 Aligned_cols=152 Identities=15% Similarity=0.118 Sum_probs=119.3
Q ss_pred cccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhh---hhc---ccchhHHHHHHHH
Q psy4738 570 QQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTP---MAA---YMGPVWLIVWRFF 643 (1188)
Q Consensus 570 i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a---~a~---~~~~~~l~~~R~l 643 (1188)
+++++|.++.+.+++.+.+.+++.+++++.|+++||+|||+.++.++..+++...... +.+ ....+.+++.|++
T Consensus 29 ~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (396)
T TIGR00882 29 LHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLY 108 (396)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999988777765544322 111 0123345777999
Q ss_pred HHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhc
Q psy4738 644 EGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIG 723 (1188)
Q Consensus 644 ~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~ 723 (1188)
+|++.+...|....+..|.. +++++..|......++|.++||.+++.+.+. + ||+.|++.+.+.++..+..+...
T Consensus 109 ~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-~--~~~~f~~~~~~~~~~~~~~~~~~ 183 (396)
T TIGR00882 109 LGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSI-D--PQIVFWLGSGFALILMLLLMFAK 183 (396)
T ss_pred HHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhcc-C--chHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999888877743 3456677888888899999999999988653 6 99999999988888766665554
Q ss_pred cCC
Q psy4738 724 YSE 726 (1188)
Q Consensus 724 ~~~ 726 (1188)
||+
T Consensus 184 ~~~ 186 (396)
T TIGR00882 184 PKA 186 (396)
T ss_pred CCC
Confidence 443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=204.17 Aligned_cols=158 Identities=15% Similarity=0.100 Sum_probs=131.5
Q ss_pred cccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhh-----CChhH-HHHHHHHHHHHHHHhhhhcc-cchhHHH
Q psy4738 566 PEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKF-----GGKHT-LGFGILSTAIFTILTPMAAY-MGPVWLI 638 (1188)
Q Consensus 566 a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~-----Grr~~-l~~~~~~~~i~~ll~a~a~~-~~~~~l~ 638 (1188)
..|.+.+|+|+|.++.++..+. .+.+.+ ++++|+++||+ ||||. ++.+.++.++.....++.++ .+.+.+.
T Consensus 10 ~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~ 87 (356)
T TIGR00901 10 TLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLA 87 (356)
T ss_pred HHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHH
Confidence 4577889999999999999765 555555 99999999998 89886 56778888888777777642 3456688
Q ss_pred HHHHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC------CCchHHHHHHHHHH
Q psy4738 639 VWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTN------NYWPVVFYLFGAVA 712 (1188)
Q Consensus 639 ~~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g------~gWr~~F~i~~~~~ 712 (1188)
..+++.|.+.+...++..+++.|++|+|||+++.++...+..+|.++++.+++.+.+..+ .+||+.|++.++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~ 167 (356)
T TIGR00901 88 GLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLI 167 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999998887654 24999999999887
Q ss_pred HHHHHHHHhhccC
Q psy4738 713 ILWFVVWLFIGYS 725 (1188)
Q Consensus 713 ~~~~~~~~~~~~~ 725 (1188)
++..+..++..||
T Consensus 168 l~~~~~~~~~~~e 180 (356)
T TIGR00901 168 LPGLLVTLFLAKE 180 (356)
T ss_pred HHHHHHHHHhccC
Confidence 7766555555554
|
|
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-17 Score=193.33 Aligned_cols=354 Identities=19% Similarity=0.194 Sum_probs=234.0
Q ss_pred hHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHh-hhccHHHHHHHHHHHHhhhccchhHHHHH
Q psy4738 75 TQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA-ARQSANWLIALRFFEGLGEGTTFPALNTL 153 (1188)
Q Consensus 75 ~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a-~~~s~~~lli~R~l~Glg~g~~~p~~~~l 153 (1188)
..+.++++|++|.+++....|+++||+|||..+..+.++..++.++..++ ..+++..+++.|++.|+..|.......-+
T Consensus 61 lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmy 140 (485)
T KOG0569|consen 61 LWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMY 140 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45778999999999999999999999999999999998888877777665 23788999999999999999999999999
Q ss_pred HhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHH-hh-hccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCC----CCC
Q psy4738 154 LAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGF-LL-KYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPAS----HPY 227 (1188)
Q Consensus 154 i~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~-l~-~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~----~~~ 227 (1188)
+.|..|++.||........+..+|..++..++.- +. +. ..|++.+....+++++..+.+.+ .||+|+- +.+
T Consensus 141 l~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~--~~W~~l~~~~~i~~~~~l~~l~~-~PESPk~Ll~~k~~ 217 (485)
T KOG0569|consen 141 LTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTE--DLWPYLLAFPLIPALLQLALLPF-LPESPKYLLIKKGD 217 (485)
T ss_pred HhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCC--cchHHHHHHHHHHHHHHHHHHhc-CCCCcchHHHHcCC
Confidence 9999999999999999999999999998655532 22 33 57999999988888776655544 5676641 110
Q ss_pred CCH---------------hH----HHHHHHHHhhh-hh---------------------hHHHHH-HHHHHHHHHHHHHH
Q psy4738 228 ISQ---------------RE----KEYLADTIGCL-AR---------------------NKIGHD-WGLFMISADLPKYM 265 (1188)
Q Consensus 228 ~~~---------------~~----~~~~~~~~~~~-~~---------------------~~~~~~-~~~~~~~~~lp~yl 265 (1188)
.++ ++ .++.++..... .. ..++.+ .+.+....|...++
T Consensus 218 ~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~ 297 (485)
T KOG0569|consen 218 EEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIF 297 (485)
T ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHH
Confidence 000 00 00000000000 00 111222 23445555666666
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchH-HHHHHH
Q psy4738 266 KSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQ-ILVVTL 344 (1188)
Q Consensus 266 ~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~-~~~~~~ 344 (1188)
++ .|++..++-......++...+.++.+.++.||+|||..+-.... ...+..+...+.........+.. ...+..
T Consensus 298 ~~-aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~---~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~ 373 (485)
T KOG0569|consen 298 KT-AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLS---LMAVALLLMSIALFLSNSFGSWLSYLCIAA 373 (485)
T ss_pred HH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 65 78999999999999999999999999999999997653221111 01111111111111111111001 111222
Q ss_pred HH-HHHHHHhhhhhHHHHhhcccCc-hhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCccchHHHHHHHHHHHHHHHHH
Q psy4738 345 FT-VGMAFMGFFYPSLKVNALDLSP-NYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFS 422 (1188)
Q Consensus 345 ~~-~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~ 422 (1188)
++ ....+.....|..+-...|+.| +.|..++++......+..++-......+.+..|. ..++.+.+.+....+..
T Consensus 374 ~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~---~~filF~i~~~~~~i~~ 450 (485)
T KOG0569|consen 374 IFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP---YVFILFVIPLAIFLIYL 450 (485)
T ss_pred HHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---hhhHHHHHHHHHHHHHH
Confidence 22 2222222335555666666555 8899999999999999999999999999998885 34445555555555444
Q ss_pred -hhhhhcccchhhhhhH
Q psy4738 423 -DYLVSKNIFSVTVIRK 438 (1188)
Q Consensus 423 -~~~~~~~~~~~~~~~k 438 (1188)
.+.++.|.|...+..+
T Consensus 451 ~~~lPETkgr~~~eI~~ 467 (485)
T KOG0569|consen 451 YRYLPETKGRTPYEIIE 467 (485)
T ss_pred HHhCcccCCCCHHHHHH
Confidence 4445555555555544
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.1e-17 Score=197.76 Aligned_cols=339 Identities=19% Similarity=0.161 Sum_probs=231.9
Q ss_pred HHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhHhhHH
Q psy4738 16 GFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGG 95 (1188)
Q Consensus 16 l~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~~~~G 95 (1188)
+++.+...++.-...+.+++.+. +|+| +.....|+.+++.++.+++.++.|
T Consensus 49 ~~~~~~~~~~~~~~~a~~l~~I~----------------------------~diG-~~~~~~w~~~~~~l~~av~~~~~G 99 (599)
T PF06609_consen 49 FSLAVIAAYFVLVLPASILPYIN----------------------------ADIG-GSDNWSWFSTAWTLASAVSFPFVG 99 (599)
T ss_pred HHHHHHHHHHHHhccHHHHHHHH----------------------------HhcC-CCccchHHHHHHHHHHHHHHHhhH
Confidence 33444445566666667777777 6787 456788999999999999999999
Q ss_pred HhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHHHHHHH
Q psy4738 96 LLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQ 175 (1188)
Q Consensus 96 ~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~~~~~ 175 (1188)
+|+|.||||++++.+.++..++++.++.+ +|...+++.-.+.|+|.|... .....++|..|.|.|....++......
T Consensus 100 ~LSDlfGRr~~~i~g~~l~vvG~Iv~atA--~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i 176 (599)
T PF06609_consen 100 RLSDLFGRRYFFIIGSLLGVVGSIVCATA--QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFI 176 (599)
T ss_pred HHHHHhcchHHHHHHHHHHHhHHHHhhcC--CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHH
Confidence 99999999999999999999999999999 999999999999999976655 456668999999999888887776666
Q ss_pred HHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCC--CCCC-CCHhHHHHHHHHHhhh---------
Q psy4738 176 IGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA--SHPY-ISQREKEYLADTIGCL--------- 243 (1188)
Q Consensus 176 lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~--~~~~-~~~~~~~~~~~~~~~~--------- 243 (1188)
.....++.++..+..+ .+|||.||+..+...+.+++.+++..+++. .|.+ .+++|+-...+.+...
T Consensus 177 ~~~~~~~~ia~~~~~~--~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~Lf 254 (599)
T PF06609_consen 177 ITTWISPLIAQLFAAH--SGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALF 254 (599)
T ss_pred hhhcccHHHHHHhccC--CCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6666788888777766 699999999988877766555444333221 1211 1111110000000000
Q ss_pred -----------h--h------------------------------------------------hHHHHHHHHHHHHHHHH
Q psy4738 244 -----------A--R------------------------------------------------NKIGHDWGLFMISADLP 262 (1188)
Q Consensus 244 -----------~--~------------------------------------------------~~~~~~~~~~~~~~~lp 262 (1188)
. + ..+.....++....+.|
T Consensus 255 Llgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p 334 (599)
T PF06609_consen 255 LLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWP 334 (599)
T ss_pred HHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 22233334667777788
Q ss_pred HHHHHHhCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhh-cchH
Q psy4738 263 KYMKSVMKFSIA---KNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYA-GCDQ 338 (1188)
Q Consensus 263 ~yl~~~~g~s~~---~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~-~~~~ 338 (1188)
+....+++-|.. +.++.+.+...+..++.++.|.+..++++ -|+...++.....+++-.+... .++.
T Consensus 335 ~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~---------~Kw~li~~~~~~ta~~Gama~~~~~n~ 405 (599)
T PF06609_consen 335 QQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRH---------IKWQLIFGSVLMTAFCGAMAAVRPDNK 405 (599)
T ss_pred HHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccc---------hhHHHHHHHHHHHHHHHHHHHccCCCc
Confidence 888877777653 57788888888899999999999888764 2333333333333222222222 2333
Q ss_pred HHHHHHHHHHHHHHhhh-hhHHHHhhcccCchhhHHHHHHHHHHHhhhhhhhhHHHHhhc
Q psy4738 339 ILVVTLFTVGMAFMGFF-YPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILV 397 (1188)
Q Consensus 339 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~ 397 (1188)
...+....+...+.+.. .+.........++++-|+++|+..+++.+||.++..+..-+.
T Consensus 406 ~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 406 NAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred chHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 23333444444444444 344444444456689999999999999999999888776544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-16 Score=190.50 Aligned_cols=182 Identities=12% Similarity=0.101 Sum_probs=150.0
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHH
Q psy4738 7 SQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWG 86 (1188)
Q Consensus 7 ~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg 86 (1188)
++||.+++........ ......++...+.+. +++|+|..|.+++.+.. ..
T Consensus 24 ~~Rw~~lva~~~~~~~-~g~~y~fsv~s~~L~----------------------------~~lgls~~~l~~i~svg-~~ 73 (591)
T PTZ00207 24 PRRFALLVLGAFCSIC-TSFMYAFNLISGAMQ----------------------------ARYNLTQRDLSTITTVG-IA 73 (591)
T ss_pred cchHHHHHHHHHHHHH-HHHHHHHHHHHHHHH----------------------------HHhCcCHHHHHHHHHHH-HH
Confidence 4566555443333322 233456677778888 78999999999998873 56
Q ss_pred HHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhh----ccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCc
Q psy4738 87 YVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR----QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTE 162 (1188)
Q Consensus 87 ~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~----~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~ 162 (1188)
++..++++|+++||+|||+++.++.+++++++++++++.. .+++.+++.|+++|+|++...+.+...+.+||| ++
T Consensus 74 ~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~ 152 (591)
T PTZ00207 74 VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN 152 (591)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh
Confidence 6788999999999999999999999999999999998632 589999999999999999999999999999996 78
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCC
Q psy4738 163 RGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP 222 (1188)
Q Consensus 163 Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p 222 (1188)
||+++|+..++.++|.++.+++...+.+. +|++.|++.+++++++++++..+++++|
T Consensus 153 RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~---~~~~~fl~l~vl~~vv~ll~~~~vr~p~ 209 (591)
T PTZ00207 153 RGAVVAIMKTFTGLGSAILGSIQLAFFSD---NTSAYFFFLMSFALVVGILAIVFMRLPP 209 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHhheeCCc
Confidence 99999999999999998655555544443 6999999999999999999998888765
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.3e-18 Score=205.92 Aligned_cols=138 Identities=15% Similarity=0.212 Sum_probs=127.8
Q ss_pred cCcchhhhhHHHHHHHHHHHHHHhhhhhhhhh-hCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhcccch
Q psy4738 574 FDWDETTQGLILGSFYWGYVIMHIPGGLLAQK-FGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTF 652 (1188)
Q Consensus 574 ~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr-~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g~~~ 652 (1188)
+|++..+.+++.+.|.+++.+++++.|+++|| +|||+++..+.++++++.++.++++ +.+.+++.|++.|+|.|...
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~--~~~~~~~~~~l~g~g~g~~~ 120 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSI--YPDLIFYGLGTIAVGSGLFK 120 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcc--cHhHHHHHHHHHHhcccccc
Confidence 89999999999999999999999999999999 8999999999999999999999887 55668899999999999999
Q ss_pred hHHHHHHHhccCCCc---chhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHH
Q psy4738 653 PAANQLLAAWIPKTE---RGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILW 715 (1188)
Q Consensus 653 p~~~~~i~~~~~~~~---rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~ 715 (1188)
|...++++|++|+++ |+++.++++.+.++|.++||.+++.+.+..+ ||+.|++.++..++.
T Consensus 121 ~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g--~~~~f~~~~~~~~~~ 184 (475)
T TIGR00924 121 ANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG--YHVGFNLAAVGMVIG 184 (475)
T ss_pred CCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHH
Confidence 999999999998765 8889999999999999999999999998878 999999988654443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-18 Score=211.35 Aligned_cols=152 Identities=24% Similarity=0.307 Sum_probs=136.9
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhcccchhHHHHH
Q psy4738 579 TTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAANQL 658 (1188)
Q Consensus 579 ~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g~~~p~~~~~ 658 (1188)
.+.+|+.+.+.++..++++++|+++|++|||+.++.+.+.+.++++++++++ +.++++++|+++|+|.|+.....+.+
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~--~~~~l~~GR~l~G~g~G~~~~~~piy 166 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP--SWYQLIVGRILTGLGVGGASVLAPVY 166 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHhccchhhhhhcchhh
Confidence 4669999999999999999999999999999999999999999999999999 66779999999999999999999999
Q ss_pred HHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCchHHHHHHHHHHHHHHHHHHhhccCCCCCCcccChhh
Q psy4738 659 LAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKL-TNNYWPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFISQKE 737 (1188)
Q Consensus 659 i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~-~g~gWr~~F~i~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~ 737 (1188)
++|..|++.||...+..+....+|..++..++....+. .+ ||..+++..+++++..+..++. ||+|+|+.+++
T Consensus 167 ~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~--Wr~~~~~~~i~~~~~~~~~~~~----pesp~~L~~~g 240 (513)
T KOG0254|consen 167 ISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAG--WRIPLGLALIPAVILALGMLFL----PESPRWLIEKG 240 (513)
T ss_pred HhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCcc--HHHHHHHHHHHHHHHHHHHHhC----CCChHHHHHcC
Confidence 99999999999999999999999999997666666543 24 9999999999999888775555 78999876644
Q ss_pred h
Q psy4738 738 M 738 (1188)
Q Consensus 738 ~ 738 (1188)
+
T Consensus 241 ~ 241 (513)
T KOG0254|consen 241 R 241 (513)
T ss_pred C
Confidence 4
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.6e-19 Score=212.35 Aligned_cols=158 Identities=13% Similarity=0.111 Sum_probs=129.3
Q ss_pred cccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhh----hCC-hhHHHHHHHHHHHHHHHhhhhcccc----hhHHHHH
Q psy4738 570 QQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQK----FGG-KHTLGFGILSTAIFTILTPMAAYMG----PVWLIVW 640 (1188)
Q Consensus 570 i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr----~Gr-r~~l~~~~~~~~i~~ll~a~a~~~~----~~~l~~~ 640 (1188)
+.+++|+++.+.|++.+++.+..++.+|+.|+++|| +|| |++++.+...++++.+++...++.+ .+.+++.
T Consensus 26 ~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 105 (437)
T TIGR00792 26 YTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYIT 105 (437)
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHH
Confidence 456789999999999999999999999999999997 677 4577888899999998888776432 4567888
Q ss_pred HHHHHhhcccchhHHHHHHHhcc-CCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-----CCCchHHHHHHHHHHHH
Q psy4738 641 RFFEGLGEGTTFPAANQLLAAWI-PKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLT-----NNYWPVVFYLFGAVAIL 714 (1188)
Q Consensus 641 R~l~Gig~g~~~p~~~~~i~~~~-~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~-----g~gWr~~F~i~~~~~~~ 714 (1188)
+++.+++.+...++..++..|.. +++||++..++.+.+..+|..+++.+.+.+.... ..+||+.|++.++++++
T Consensus 106 ~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~ 185 (437)
T TIGR00792 106 YILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVV 185 (437)
T ss_pred HHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHH
Confidence 99999999988888888889987 5789999999999998998888877766665321 12499999999999888
Q ss_pred HHHHHHhhccCCC
Q psy4738 715 WFVVWLFIGYSEP 727 (1188)
Q Consensus 715 ~~~~~~~~~~~~p 727 (1188)
..+..++..||++
T Consensus 186 ~~~~~~~~~~e~~ 198 (437)
T TIGR00792 186 SLIICFFGTKERY 198 (437)
T ss_pred HHHHHHcCCEecC
Confidence 7776666665544
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-18 Score=192.91 Aligned_cols=156 Identities=21% Similarity=0.270 Sum_probs=144.0
Q ss_pred cccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhh
Q psy4738 568 ESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLG 647 (1188)
Q Consensus 568 ~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig 647 (1188)
+.-.++.+-+++++|++.+.+.+.+.+..++.|.+.||+|+|..+++|+......+++.++.+ +++.+++.|.+||+|
T Consensus 95 ~~~~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~--sy~~l~vAR~LQgvg 172 (464)
T KOG3764|consen 95 PAEAISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN--SYPMLFVARSLQGVG 172 (464)
T ss_pred chhccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc--hhHHHHHHHHHhhhh
Confidence 334456777888999999999999999999999999999999999999999999999999999 556699999999999
Q ss_pred cccchhHHHHHHHhccCCC-cchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhccCC
Q psy4738 648 EGTTFPAANQLLAAWIPKT-ERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSE 726 (1188)
Q Consensus 648 ~g~~~p~~~~~i~~~~~~~-~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~~~ 726 (1188)
.+....+..++++|.||++ ||++++|+.-.+.++|-.+||+.||.+-+..| .+..|++.+++.++...+.+++++++
T Consensus 173 sA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G--k~aPFlVL~~v~Lld~~L~l~vi~p~ 250 (464)
T KOG3764|consen 173 SAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG--KSAPFLVLAIVLLLDGALQLLVIEPT 250 (464)
T ss_pred HHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC--CcCcHHHHHHHHHHHHHHHHheeCcc
Confidence 9999999999999999876 68999999999999999999999999999988 99999999999999998888887654
Q ss_pred C
Q psy4738 727 P 727 (1188)
Q Consensus 727 p 727 (1188)
.
T Consensus 251 ~ 251 (464)
T KOG3764|consen 251 E 251 (464)
T ss_pred c
Confidence 3
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-22 Score=242.69 Aligned_cols=159 Identities=21% Similarity=0.343 Sum_probs=140.0
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhccc-chhHHHHHHHHHHhhcccchhHH
Q psy4738 577 DETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYM-GPVWLIVWRFFEGLGEGTTFPAA 655 (1188)
Q Consensus 577 s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~-~~~~l~~~R~l~Gig~g~~~p~~ 655 (1188)
++.+.++..+.+.++..+|.+..|.++||+|||+.+..+.++..+++++++++++. +.+.+.++|+++|++.|+..+..
T Consensus 44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~ 123 (451)
T PF00083_consen 44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVS 123 (451)
T ss_pred hHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 56788999999999999999999999999999999999999999999999999832 44559999999999999999999
Q ss_pred HHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCchHHHHHHHHHHHHHHHHHHhhccCCCCCCcccC
Q psy4738 656 NQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTN-NYWPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFIS 734 (1188)
Q Consensus 656 ~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g-~gWr~~F~i~~~~~~~~~~~~~~~~~~~pe~~~~~~ 734 (1188)
..++.|..|+++||+..++.+....+|..++..++..+....+ .+||+.+++..+++++..+...++ ||+|+|+.
T Consensus 124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~----pESP~wL~ 199 (451)
T PF00083_consen 124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFL----PESPRWLL 199 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccceec
Confidence 9999999999999999999999999999999888876643322 359999999999998877766666 99999986
Q ss_pred hhhhH
Q psy4738 735 QKEMD 739 (1188)
Q Consensus 735 ~~~~~ 739 (1188)
.++++
T Consensus 200 ~~~~~ 204 (451)
T PF00083_consen 200 SKGRD 204 (451)
T ss_pred ccccc
Confidence 55543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.7e-17 Score=199.32 Aligned_cols=349 Identities=15% Similarity=0.142 Sum_probs=236.2
Q ss_pred hhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHH
Q psy4738 74 KTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTL 153 (1188)
Q Consensus 74 ~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~l 153 (1188)
++.+|+.+++.++..++++++|+++|++|||+.+..+.+.+.+++++++++ +|+++++++|+++|+|.|........+
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a--~~~~~l~~GR~l~G~g~G~~~~~~piy 166 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA--PSWYQLIVGRILTGLGVGGASVLAPVY 166 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHhccchhhhhhcchhh
Confidence 678999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCC-------
Q psy4738 154 LAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHP------- 226 (1188)
Q Consensus 154 i~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~------- 226 (1188)
++|..|++.||...+..+....+|..++..++....+. ..+||..+.+..+.+++..+. .++.||+|+.--
T Consensus 167 ~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~-~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~ 244 (513)
T KOG0254|consen 167 ISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV-YAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEE 244 (513)
T ss_pred HhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC-CccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHH
Confidence 99999999999999999999999999995555544332 138999998888888887777 777788775210
Q ss_pred -------------CCCHhHHHHHH-HHH---------------hh--hhh--------hHHHHHHHHHHHHHHHHHHHHH
Q psy4738 227 -------------YISQREKEYLA-DTI---------------GC--LAR--------NKIGHDWGLFMISADLPKYMKS 267 (1188)
Q Consensus 227 -------------~~~~~~~~~~~-~~~---------------~~--~~~--------~~~~~~~~~~~~~~~lp~yl~~ 267 (1188)
+..+.|.++++ +.. .. ..+ ..+.+..+......|.+.+++.
T Consensus 245 a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~ 324 (513)
T KOG0254|consen 245 AKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKS 324 (513)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHh
Confidence 00111111111 000 00 000 2222223344555677777766
Q ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhh----cc-------
Q psy4738 268 VMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYA----GC------- 336 (1188)
Q Consensus 268 ~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~----~~------- 336 (1188)
.|.+... ........+...++..+...+.||+|||+ ....+..+..++.+.+... ..
T Consensus 325 -~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~----------lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~ 392 (513)
T KOG0254|consen 325 -AGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRK----------LLLFGAAGMSICLVILAVVGVFALYYPNSSKG 392 (513)
T ss_pred -cCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHH----------HHHHhHHHHHHHHHHHHHHHHHhccCCCcccc
Confidence 4444322 55566677788888888899999998653 3444444444433332221 11
Q ss_pred hHHHHHHHHHH-HHHHHhhhhhHHHHhhcccCc-hhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCccchHHHHHHHHH
Q psy4738 337 DQILVVTLFTV-GMAFMGFFYPSLKVNALDLSP-NYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLT 414 (1188)
Q Consensus 337 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~~~~~~~~~~~ 414 (1188)
..+..+...++ ...+.....+.......+..| +.|+.+.++......+...+-......+.+..+ ....+...+..
T Consensus 393 ~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~--~~~~f~~f~~~ 470 (513)
T KOG0254|consen 393 AGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG--IGGTFGYFGGI 470 (513)
T ss_pred hhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccchHHHHHHH
Confidence 11222222222 222333345555566667666 889999999999999988877776666666554 12223333333
Q ss_pred -HHHHH-HHHhhhhhcccchhhhhhHhh
Q psy4738 415 -AIVAG-WFSDYLVSKNIFSVTVIRKIF 440 (1188)
Q Consensus 415 -~~~~~-~~~~~~~~~~~~~~~~~~k~~ 440 (1188)
.+... ......++.+.+..++..+.+
T Consensus 471 ~~~~~~~fv~~~~pETkg~sleei~~~~ 498 (513)
T KOG0254|consen 471 CLLSLIIFVFFFVPETKGLTLEEINELF 498 (513)
T ss_pred HHHHHHHHheEEcccCCCCcHHHHHHHH
Confidence 33333 455666677777766666543
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-18 Score=207.63 Aligned_cols=399 Identities=15% Similarity=0.199 Sum_probs=273.7
Q ss_pred CcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHH-HHH
Q psy4738 565 LPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVW-RFF 643 (1188)
Q Consensus 565 ~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~-R~l 643 (1188)
...++++++++.+.++.+|+.++..-.+.+..|+.+.+.||||.|.+.+.|.++.+++.++.++++ +.|++++. -++
T Consensus 67 v~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~--~i~~l~lt~gvi 144 (509)
T KOG2504|consen 67 LLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFAT--SLWQLYLTFGVI 144 (509)
T ss_pred hhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHH
Confidence 345788999999999999999999999999999999999999999999999999999999999999 56766555 699
Q ss_pred HHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhc
Q psy4738 644 EGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIG 723 (1188)
Q Consensus 644 ~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~ 723 (1188)
.|+|.|..+..+..++..||+ ++|+.+.|+-.++.++|..+=|.+...+.+..| ||+.+++.+.+.+-..+....+.
T Consensus 145 ~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G--~r~~~l~~~~~~l~~~~~~~~~r 221 (509)
T KOG2504|consen 145 GGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYG--WRGALLIFGGISLNVLVAGALLR 221 (509)
T ss_pred hhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999984 789999999999999999999999999999988 99999999999877777777777
Q ss_pred cCCCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhcccccccc--C-CCCchh---hhhc--hhhHHHHHHHHhhhhhe
Q psy4738 724 YSEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQD--L-PPTPWK---EMAT--SWPVIALVITQVVLISL 795 (1188)
Q Consensus 724 ~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~---~~~~--~~~~~~~~~~~~~~~~~ 795 (1188)
|..++.++. .+++.+...+........ ...+..++.....+ . .....+ +..+ ..+....
T Consensus 222 p~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 288 (509)
T KOG2504|consen 222 PLSPPKKPN-EEKDLRNSAASVESTPKP--VELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLS---------- 288 (509)
T ss_pred CCCcCCCch-hhhhhccccccccccccc--cccccccCCCCCCcccccchhhhhhCCccccccchhhhhh----------
Confidence 655554433 111111100000000000 00000000000000 0 000000 0000 0000000
Q ss_pred eecCCCcccccccchhHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhcccccccccchhHHHhhhccCcchhHHHHHHH
Q psy4738 796 FYLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSATSMGPAVGIILASYSGCNKVLAVMFFA 875 (1188)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (1188)
...+++++++.++...+...+...+++.....+|.|.+ ..+++..
T Consensus 289 -----~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~----------------------------- 333 (509)
T KOG2504|consen 289 -----MLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSN----------------------------- 333 (509)
T ss_pred -----hhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChh-----------------------------
Confidence 11346888899999999999988888888888888887 4454433
Q ss_pred HhhcccccccCcccccccCCChhhHHHHHHHHhcccccccccccccccccccccccccccCCCCCCCcchhHHHHhhhhh
Q psy4738 876 IGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHGKQARYHWTNRAPYSFNFPLFKYVLRKHAD 955 (1188)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1188)
T Consensus 334 -------------------------------------------------------------------------------- 333 (509)
T KOG2504|consen 334 -------------------------------------------------------------------------------- 333 (509)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccCCCCCCCchhhhcccchhhHHhhHhhcccchhhhhhcccchhhhccCccchhhHHHHHHHHhhhchhhHHHHhhcc
Q psy4738 956 KYNRFQDLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASNGLLSALPFLFMWIFSQGAGCLSDFIVERQW 1035 (1188)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~~~~~~i~~~~~g~lsd~~~~r~~ 1035 (1188)
+...+.....+...++.++.|+++|+-..+
T Consensus 334 ------------------------------------------------~aa~l~Siigi~~i~gRi~~G~laD~~~~~-- 363 (509)
T KOG2504|consen 334 ------------------------------------------------DAAFLLSIIGVSDIIGRIILGLLADKPGIR-- 363 (509)
T ss_pred ------------------------------------------------hhHHHHHHHHHhhhhhhhhhhhhcCccccc--
Confidence 233344555577888999999999987533
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHhhhccCCchHHHHHHHHHHhhh-hccccccccccccC-CCCcchhHHHHHhhhhhhh
Q psy4738 1036 FSMTLTRKIFATAASMGPAVGIILASYSGCNKVLAVMFFAIGMGF-MGFYYPSIRINSLD-LSPNYAATLMAIVNGLGAV 1113 (1188)
Q Consensus 1036 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 1113 (1188)
++....++.+..++........ +....+..+++.+++ .+...........| ...++-..+.|+...++.+
T Consensus 364 ------~~~~~~~~ll~~gl~~~~~p~~--~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi 435 (509)
T KOG2504|consen 364 ------ALVLFLLTLLIAGLARLFLPFA--TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGI 435 (509)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHH
Confidence 2344445555544444333322 222333333333333 33333333333334 5567789999999999999
Q ss_pred hhhhhhhhheeecCCCccchhHHHHHHHHHHHHHhhhhhheec
Q psy4738 1114 SGIFSAPLIGIMTPNSTMSEWRLVFWLTFIILAVTNLFYLVFG 1156 (1188)
Q Consensus 1114 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1156 (1188)
+..+||++.|.+.|..+ .|...|+......+++...++...
T Consensus 436 ~~l~gpPiag~~~d~tg--~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 436 GALVGPPIAGLLYDITG--NYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHcCcccceeeeeccC--CeeeehhhcChHHHHHHHHHHHhH
Confidence 99999999998888763 488899998888888877666655
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-16 Score=176.64 Aligned_cols=352 Identities=15% Similarity=0.141 Sum_probs=260.2
Q ss_pred CCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHH
Q psy4738 563 HLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRF 642 (1188)
Q Consensus 563 ~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~ 642 (1188)
..+-.+++++|+|+|.+..|.+++.-.++.++.++...+|++|+|.++.+..++++.++++++=.... .+.++.+-.
T Consensus 31 vgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~---~~~L~~gt~ 107 (395)
T COG2807 31 VGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGG---LPLLFLGTL 107 (395)
T ss_pred hhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHH
Confidence 34456899999999999999999999999999999999999999999999999999999999876552 455999999
Q ss_pred HHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhh
Q psy4738 643 FEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFI 722 (1188)
Q Consensus 643 l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~ 722 (1188)
+.|.|.+......+.++-+.|| ++-+..+|+|.+..+.|.++++.+.--+.++. .|||....+-+.++++..+.++.-
T Consensus 108 l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~-~gW~~aL~~WAl~allAl~~WlPq 185 (395)
T COG2807 108 LAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHS-GGWRGALGFWALLALLALLIWLPQ 185 (395)
T ss_pred HHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh-ccHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999996 67899999999999999999999999998877 349999999999999888776533
Q ss_pred ccCCCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeecCCCc
Q psy4738 723 GYSEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTP 802 (1188)
Q Consensus 723 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1188)
..|...+++.. + . ..
T Consensus 186 ------~~r~~~~~~~~---------------------~--------~------------------------------~~ 200 (395)
T COG2807 186 ------ALREQAASIAT---------------------K--------L------------------------------VS 200 (395)
T ss_pred ------ccccccccccc---------------------c--------c------------------------------cc
Confidence 11110000000 0 0 00
Q ss_pred ccccccchhHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhcccccccccchhHHHhhhccCcchhHHHHHHHHhhcccc
Q psy4738 803 WKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSATSMGPAVGIILASYSGCNKVLAVMFFAIGMGFMG 882 (1188)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 882 (1188)
....++|+..|...+....+...+|.+..|+|.+++| .|+|.+
T Consensus 201 ~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~------------------------------------ 243 (395)
T COG2807 201 VRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILID-RGLSAA------------------------------------ 243 (395)
T ss_pred ccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHH------------------------------------
Confidence 1124566667777777788888999999999999975 355543
Q ss_pred cccCcccccccCCChhhHHHHHHHHhcccccccccccccccccccccccccccCCCCCCCcchhHHHHhhhhhhcccCCC
Q psy4738 883 FYYPSIRINSLDLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHGKQARYHWTNRAPYSFNFPLFKYVLRKHADKYNRFQD 962 (1188)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 962 (1188)
T Consensus 244 -------------------------------------------------------------------------------- 243 (395)
T COG2807 244 -------------------------------------------------------------------------------- 243 (395)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCchhhhcccchhhHHhhHhhcccchhhhhhcccchhhhccCccchhhHHHHHHHHhhhchhhHHHHhhccchhHHHH
Q psy4738 963 LPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASNGLLSALPFLFMWIFSQGAGCLSDFIVERQWFSMTLTR 1042 (1188)
Q Consensus 963 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~~~~~~i~~~~~g~lsd~~~~r~~~~~~~~r 1042 (1188)
++|.+.....+...+.+...-.+.+|..+ +
T Consensus 244 -----------------------------------------~aG~llsl~~l~~~~~~ll~P~la~R~~n---------~ 273 (395)
T COG2807 244 -----------------------------------------EAGSLLSLMQLAQLPTALLIPLLARRSKN---------Q 273 (395)
T ss_pred -----------------------------------------HhhhHHHHHHHHHHHHHHHHHHHHHHhcc---------c
Confidence 56666677778888888888888887432 2
Q ss_pred HHHHHhhhhhhHHHHHhhhccCC-chHHHHHHHHHHhhhhc-cccccccccccCCCCcchhHHHHHhhhhhhhhhhhhhh
Q psy4738 1043 KIFATAASMGPAVGIILASYSGC-NKVLAVMFFAIGMGFMG-FYYPSIRINSLDLSPNYAATLMAIVNGLGAVSGIFSAP 1120 (1188)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 1120 (1188)
|.+......+..++...+.+.+. ++.++ .+.++.+..+ +.........-...|++++.-+|+...++++-+.+||.
T Consensus 274 r~~~~~~~~~~l~G~~G~~~~P~~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~ 351 (395)
T COG2807 274 RPLVVLALLLMLVGLVGLLLAPGQLPILW--ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPW 351 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHH--HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhh
Confidence 33444445555555555544443 33444 2333433222 22222223233345777999999999999999999999
Q ss_pred hheeecCCCccchhHHHHHHHHHHHHHhhhhhhee
Q psy4738 1121 LIGIMTPNSTMSEWRLVFWLTFIILAVTNLFYLVF 1155 (1188)
Q Consensus 1121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1155 (1188)
++|.+.|.. ++|+..+.......+...+.-+..
T Consensus 352 l~G~lhDa~--gsw~~~~~~l~~~~i~m~i~Gl~a 384 (395)
T COG2807 352 LFGFLHDAT--GSWSAPLVLLALATLLMLIFGLRA 384 (395)
T ss_pred hHhHHHHhc--CChHHHHHHHHHHHHHHHHHHhhc
Confidence 999999887 569988887766665555444433
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=174.46 Aligned_cols=156 Identities=17% Similarity=0.283 Sum_probs=142.1
Q ss_pred cccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhh
Q psy4738 568 ESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLG 647 (1188)
Q Consensus 568 ~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig 647 (1188)
|..+..++.+..|..++...-..+..+++..+|.++|++|||+.+....+.-++...+.+.++|+.. +.+.|.+.|+|
T Consensus 102 ~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~--L~~f~~l~~~g 179 (528)
T KOG0253|consen 102 PALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFAS--LCVFRALWGFG 179 (528)
T ss_pred HHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeeh--hhHHHHHHhcc
Confidence 5566778888899999999999999999999999999999999999999999999999999997666 99999999999
Q ss_pred cccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4738 648 EGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSEP 727 (1188)
Q Consensus 648 ~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~~~p 727 (1188)
.|+ .|...++-.|.-|..+|++..-.. ..+.+|.++...+...+....| |||.....+.+..+.+.+.+++ |
T Consensus 180 ~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~g--wr~~l~~~~~pl~~~a~f~~w~----~ 251 (528)
T KOG0253|consen 180 VGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFG--WRYLLFTSSTPLMFAARFLVWV----Y 251 (528)
T ss_pred CCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHhHHHHHHHHHhhc----c
Confidence 999 899999999999999999987777 9999999999999999999988 9999988887777777777777 8
Q ss_pred CCCccc
Q psy4738 728 GSNPFI 733 (1188)
Q Consensus 728 e~~~~~ 733 (1188)
|+||..
T Consensus 252 ESpRf~ 257 (528)
T KOG0253|consen 252 ESPRFY 257 (528)
T ss_pred cCcchh
Confidence 999874
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-14 Score=173.10 Aligned_cols=147 Identities=21% Similarity=0.289 Sum_probs=120.9
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhccc-CchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhcc
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKF-GGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGT 145 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~-Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~ 145 (1188)
+++|+++.+.+.+.+.|.....++++++|+++||+ ||||++..+.++.+++.++.+... .+...+.+.-.+.++|.|.
T Consensus 38 ~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~-~~~~~~~l~l~li~iG~G~ 116 (493)
T PRK15462 38 NQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE-IHPSFLYLSLAIIVCGYGL 116 (493)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHhccc
Confidence 46899999999999999999999999999999999 999999999999999987776541 1223344444455566677
Q ss_pred chhHHHHHHhhccCCC--chhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhh
Q psy4738 146 TFPALNTLLAQWVPPT--ERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL 217 (1188)
Q Consensus 146 ~~p~~~~li~~~~p~~--~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~ 217 (1188)
..|...++++|++|++ +|.++.++.+.+..+|..++|.+.+++.+. .|||+.|.+.++ +.+..++.+.+
T Consensus 117 ~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~--~Gw~~~F~iaai-gm~l~li~~~~ 187 (493)
T PRK15462 117 FKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE--YSWAMGFGLAAV-GMIAGLVIFLC 187 (493)
T ss_pred ccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh--hChHHHHHHHHH-HHHHHHHHHHH
Confidence 7788889999999976 799999999999999999999999999998 899999998655 44444444444
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-16 Score=194.33 Aligned_cols=151 Identities=17% Similarity=0.270 Sum_probs=128.9
Q ss_pred cccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhh---hcccchhHHHHHHHHHHh
Q psy4738 570 QQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPM---AAYMGPVWLIVWRFFEGL 646 (1188)
Q Consensus 570 i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~---a~~~~~~~l~~~R~l~Gi 646 (1188)
+..+..-|+...+++..+..+...+..++.|.++||+.|||+++.+-++.++..+..++ ....+.|.+++.-++.|+
T Consensus 36 lv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~ 115 (524)
T PF05977_consen 36 LVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGI 115 (524)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 33455567889999999999999999999999999999999999998887766554432 334567889999999999
Q ss_pred hcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhh
Q psy4738 647 GEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFI 722 (1188)
Q Consensus 647 g~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~ 722 (1188)
+.+...|+-.+++.|..|+++..++.++.+...++..++||.+||.+....| =.++|.++++.-++........
T Consensus 116 ~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G--~~~~f~inalsfl~~i~~l~~~ 189 (524)
T PF05977_consen 116 GSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFG--AAAAFLINALSFLISILALLRW 189 (524)
T ss_pred HHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999888 7889999887655544433333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=4e-16 Score=190.61 Aligned_cols=143 Identities=19% Similarity=0.163 Sum_probs=124.0
Q ss_pred ccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhh-hCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhh
Q psy4738 569 SQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQK-FGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLG 647 (1188)
Q Consensus 569 ~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr-~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig 647 (1188)
.+++++|+++++.+++.+.|........++.|+++|| +|||+.+..+.++++++..+++++++ +.+.+++.|+++|+|
T Consensus 47 yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~-~~~~l~~~~~l~gig 125 (500)
T PRK09584 47 YLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGH-DAGIVYMGMATIAVG 125 (500)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHh
Confidence 3457899999999999999887777777899999999 59999999999999999999998752 344577899999999
Q ss_pred cccchhHHHHHHHhccCCCc--chhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHH
Q psy4738 648 EGTTFPAANQLLAAWIPKTE--RGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAIL 714 (1188)
Q Consensus 648 ~g~~~p~~~~~i~~~~~~~~--rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~ 714 (1188)
.|...|...+++.|++|+++ |+++.++++.+.++|..+||.+++++.+..| ||+.|++.++..++
T Consensus 126 ~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g--~~~~F~i~~i~~~i 192 (500)
T PRK09584 126 NGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG--WSVAFALSVVGMLI 192 (500)
T ss_pred hhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC--HHHHHHHHHHHHHH
Confidence 99999999999999998654 5568899999999999999999999999888 99999998864333
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-15 Score=180.01 Aligned_cols=326 Identities=12% Similarity=0.052 Sum_probs=202.9
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcc----cCc-hHHHHHHHHHHHHHHHHHHHhhh----ccHHHHHHHHH
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQK----FGG-KHTLGFGILSTAIFTLLTPFAAR----QSANWLIALRF 137 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr----~Gr-k~vl~~~lll~~v~sll~a~a~~----~s~~~lli~R~ 137 (1188)
+++|+|+.+.|.+.++..+..++..|+.|+++|| +|| |+.++.+.+..++...+....+. ..+..+++.-.
T Consensus 38 ~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~ 117 (444)
T PRK09669 38 DVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYI 117 (444)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 6799999999999999999999999999999999 777 45566777777777665544411 12456666777
Q ss_pred HHHhhhccchhHHHHHHhhcc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CCCCChhHHHHHHHHHHHH
Q psy4738 138 FEGLGEGTTFPALNTLLAQWV-PPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT-----DGDWPEIFYLFGILGVLWF 211 (1188)
Q Consensus 138 l~Glg~g~~~p~~~~li~~~~-p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~-----~~gWr~~F~i~g~i~li~~ 211 (1188)
+.+.+.......-.++..|+. +++||.+..++-..+..+|..+++.+...+.... ..||+..+.+.++++++..
T Consensus 118 l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~ 197 (444)
T PRK09669 118 LLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLF 197 (444)
T ss_pred HHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 777666666666678999988 5688999888887777777777665544433321 1479989998888887776
Q ss_pred HHHhhhcccCCCCCCCCCHhHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy4738 212 VAWCFLCYNDPASHPYISQREKEYLADTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLL 286 (1188)
Q Consensus 212 il~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~ 286 (1188)
+..++..+|++++++..+.+.++..+..++++.. ..+.............+.|.+...+. ....+.+.....+.
T Consensus 198 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~ 276 (444)
T PRK09669 198 FCCFFMTKERYTPEVDNSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLR-PDLATLFLVTGMIA 276 (444)
T ss_pred HHHhCCeEEecCCCCcCCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCC-HHHHHHHHHHHHHH
Confidence 6666666654322211111112222222222211 11222222222223333333443432 33334455555677
Q ss_pred HHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHH-HHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcc
Q psy4738 287 MWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPAS-GVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALD 365 (1188)
Q Consensus 287 ~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (1188)
.+++.++.++++||+++|+. ...+.....+ .+.......++.....+...+...+.+...+.......|
T Consensus 277 ~ii~~~~~~~l~~r~gk~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad 346 (444)
T PRK09669 277 GLFGALLSERLLGKFDRVRA----------FKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSD 346 (444)
T ss_pred HHHHHHHHHHHHHHhChHHH----------HHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77888899999999987532 1222222221 221222222333333333444444555555666666655
Q ss_pred cCc--------hhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCcc
Q psy4738 366 LSP--------NYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVL 403 (1188)
Q Consensus 366 ~~p--------~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~ 403 (1188)
..+ +..|...|..+....+|.+++|.+.|.+++..|+.
T Consensus 347 ~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 347 VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 532 34678899999999999999999999999988763
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.2e-15 Score=175.91 Aligned_cols=353 Identities=16% Similarity=0.064 Sum_probs=234.7
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhc----ccCchHHHHHH-HHHHHHHHHHHHHhhhccHHHHH--------
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQ----KFGGKHTLGFG-ILSTAIFTLLTPFAARQSANWLI-------- 133 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaD----r~Grk~vl~~~-lll~~v~sll~a~a~~~s~~~ll-------- 133 (1188)
+++|.+..+.+++..+..+...+.+|+.|+++| |+||||.++.+ .+...++.++.+++ .+...++
T Consensus 32 ~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~--~~~~~~~~~~~~~~~ 109 (477)
T TIGR01301 32 QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFA--ADIGHLFGDNLDKKT 109 (477)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhC--chhhhhccccccccc
Confidence 478999999999999999999999999999999 59999998875 55555666777776 4443221
Q ss_pred ----HHHHHHH-----hhhccchhHHHHHHhhccCCCch--hhHHHHHHHHHHHHHHHHHHHHHHh--hhcc--------
Q psy4738 134 ----ALRFFEG-----LGEGTTFPALNTLLAQWVPPTER--GKIGSFVFAGNQIGTVFSSFLSGFL--LKYT-------- 192 (1188)
Q Consensus 134 ----i~R~l~G-----lg~g~~~p~~~~li~~~~p~~~R--g~~~gi~~~~~~lG~~ig~~lgg~l--~~~~-------- 192 (1188)
+.+.+.| ++.....+...++++|.+|+++| +++.++.+...++|.++|+.++++. .+..
T Consensus 110 ~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~ 189 (477)
T TIGR01301 110 KPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEAC 189 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccc
Confidence 1333434 47777788889999999998865 6799999999999999999999875 2210
Q ss_pred ---CCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCC---------CHh-HH---HHHHHHHhhhh-------hhHHH
Q psy4738 193 ---DGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYI---------SQR-EK---EYLADTIGCLA-------RNKIG 249 (1188)
Q Consensus 193 ---~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~---------~~~-~~---~~~~~~~~~~~-------~~~~~ 249 (1188)
..+-|+.|++.+++.++..+...+..+|.|..++.. ++. ++ .++.+.++... ..+++
T Consensus 190 ~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqff 269 (477)
T TIGR01301 190 GVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCL 269 (477)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhhHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 015688999988888888888888888865321110 000 01 11112222111 15666
Q ss_pred HHHHHHHHHHHHHHHHH-HHhCCCHH-----HH----HHH-HHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHH
Q psy4738 250 HDWGLFMISADLPKYMK-SVMKFSIA-----KN----GVL-SSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTT 318 (1188)
Q Consensus 250 ~~~~~~~~~~~lp~yl~-~~~g~s~~-----~~----g~l-~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~ 318 (1188)
...+++.+..|.+.|+. ++++-++. +. |.. .....+...+.+++..++.+|+++ ||....
T Consensus 270 sW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~---------~k~~~~ 340 (477)
T TIGR01301 270 NWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGA---------GKRLWG 340 (477)
T ss_pred HHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------chhHHH
Confidence 66688888888888876 45654321 12 222 223334444555666667777764 234445
Q ss_pred HHHHHHHHHHHHHHhhcc-----------------h---HHHHHHHHHHHHHHHhhhhhHHHHhhcc-cCc--hhhHHHH
Q psy4738 319 IASVGPASGVILASYAGC-----------------D---QILVVTLFTVGMAFMGFFYPSLKVNALD-LSP--NYAGTLM 375 (1188)
Q Consensus 319 i~~~~~~~~l~~~~~~~~-----------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p--~~~g~~~ 375 (1188)
++.+..+.++....+... + .......+...+..........++...+ .++ +..|..+
T Consensus 341 ~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~m 420 (477)
T TIGR01301 341 IVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSM 420 (477)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchh
Confidence 555555555444432211 0 1333333333344444444444444444 442 4569999
Q ss_pred HHHHHHHhhhhhhhhHHHHhhccCCCccchHHHHHHHHHHHHHHHHHhhhhhccc
Q psy4738 376 AIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSDYLVSKNI 430 (1188)
Q Consensus 376 g~~~~~~~lgg~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (1188)
|+.|.+-.+...+.....|.+.+..|......+.+.++.++++++...+...|.+
T Consensus 421 gilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 421 GVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999988888888888888899988888888776665543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-17 Score=186.23 Aligned_cols=398 Identities=15% Similarity=0.114 Sum_probs=265.5
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHH
Q psy4738 7 SQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWG 86 (1188)
Q Consensus 7 ~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg 86 (1188)
++....+.+...+++.+..|-.+++.+.|-+.. .+. ....+.=|..+...+.+..+-++|
T Consensus 37 w~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~-----------------lY~---~~~~~~g~~ps~i~~~Vn~~A~vG 96 (538)
T KOG0252|consen 37 WKHFKAIIIAGMGFFTDSYDLFSISLVTKILGY-----------------LYY---HGDESGGHYPSGVLALVNAAALVG 96 (538)
T ss_pred HHHHHHHHHhhhhhcccchhhhhHHHHHHHHHH-----------------Hhc---CCCCCCCcCCchHHHHHHHHHHHH
Confidence 345567778888999999999999999998772 000 000011234567788899999999
Q ss_pred HHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcc-----HHHHHHHHHHHHhhhccchhHHHHHHhhccCCC
Q psy4738 87 YVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQS-----ANWLIALRFFEGLGEGTTFPALNTLLAQWVPPT 161 (1188)
Q Consensus 87 ~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s-----~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~ 161 (1188)
..++|+..|+++||+|||+++...+++..++|+++++....+ ..++.+.|++.|+|.|+-+|.+.++.+|....+
T Consensus 97 ti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~ 176 (538)
T KOG0252|consen 97 TIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKK 176 (538)
T ss_pred HHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhc
Confidence 999999999999999999999999999999999888763222 568999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-------------CCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCC--
Q psy4738 162 ERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT-------------DGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHP-- 226 (1188)
Q Consensus 162 ~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~-------------~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~-- 226 (1188)
+||..++.+.+...+|...|.+++-.+..-. +.=||..|-+..+.+++ .+.+-..+||+++-..
T Consensus 177 ~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~-~ly~Rl~M~Et~~Y~al~ 255 (538)
T KOG0252|consen 177 TRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALL-VLYFRLKMPETARYTALV 255 (538)
T ss_pred cccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHH-HHHhhhcCCcchhHHHHh
Confidence 9999999999988888888877776665421 12499888655554433 3344455666543220
Q ss_pred --C-------CCHhHHH--------------------HHHHHHhhh--------hhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy4738 227 --Y-------ISQREKE--------------------YLADTIGCL--------ARNKIGHDWGLFMISADLPKYMKSVM 269 (1188)
Q Consensus 227 --~-------~~~~~~~--------------------~~~~~~~~~--------~~~~~~~~~~~~~~~~~lp~yl~~~~ 269 (1188)
+ .+++... .+.+..... ....|..+..+|....+....+++ .
T Consensus 256 ~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~-i 334 (538)
T KOG0252|consen 256 SKKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-I 334 (538)
T ss_pred hcCHhhhhhccccccccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh-h
Confidence 0 0000000 000000000 015566666777777777777775 3
Q ss_pred CCCHHHHHH--------HHHHH-HHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchH--
Q psy4738 270 KFSIAKNGV--------LSSLP-FLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQ-- 338 (1188)
Q Consensus 270 g~s~~~~g~--------l~~~~-~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~-- 338 (1188)
|+.+.++.. ...+. ..+.+.|-++...+.|++| ||....-++.+..+..+.+....++.
T Consensus 335 g~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iG----------Rk~iq~~GF~~~~i~~~~~~~~y~~~~~ 404 (538)
T KOG0252|consen 335 GVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIG----------RKYIQLMGFFIMTIFFFVIAGPYNQLEN 404 (538)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhh----------hHHHHHhhHHHHHHHHHHHcCCcccccc
Confidence 443322222 22222 2223335566667889999 56667777777777766665554321
Q ss_pred -HHHHHHHHHHHHHHhhhhh-HHHHhhcccCc-hhhHHHHHHHHHHHhhhhhhhhHHHHhhcc-----CCCccchHHHHH
Q psy4738 339 -ILVVTLFTVGMAFMGFFYP-SLKVNALDLSP-NYAGTLMAIVNGIGAISGIISPYLIGILVP-----NNGVLSSLPFLL 410 (1188)
Q Consensus 339 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p-~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~-----~~G~~~~~~~~~ 410 (1188)
....++..+..++.-+-.+ .......+..| +.||+.-|+.-..+-+|++++.....++.+ ..| ..-.+++
T Consensus 405 ~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g--~~~v~~i 482 (538)
T KOG0252|consen 405 TIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIG--VRNVFII 482 (538)
T ss_pred cCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCcccc--chHHHHH
Confidence 1122222222222222211 22234445555 889999999999999999999999999998 444 3445677
Q ss_pred HHHHHHHHHHHHhhhhhcccchhhhhhH
Q psy4738 411 MWLTAIVAGWFSDYLVSKNIFSVTVIRK 438 (1188)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k 438 (1188)
.+.+..+..+....+.+.+.+..++..+
T Consensus 483 ~~~~~~~gi~~T~l~pEtk~~~leei~~ 510 (538)
T KOG0252|consen 483 LAGCMLLGILFTLLIPETKGKSLEEISN 510 (538)
T ss_pred HHHHHHHhHheeEEeecccccCHHHhcC
Confidence 7777777777777777777776666544
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-20 Score=228.54 Aligned_cols=350 Identities=20% Similarity=0.274 Sum_probs=231.7
Q ss_pred ChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhc---cHHHHHHHHHHHHhhhccchh
Q psy4738 72 DEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ---SANWLIALRFFEGLGEGTTFP 148 (1188)
Q Consensus 72 s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~---s~~~lli~R~l~Glg~g~~~p 148 (1188)
+..+.+++.+++++|..++.+.+|+++||+|||+++..+.++..+++++++++ + |++.+.++|+++|++.|...+
T Consensus 44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~R~~~G~~~g~~~~ 121 (451)
T PF00083_consen 44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFA--PSYNNFWMLLIGRFLIGFGIGGAYV 121 (451)
T ss_pred hHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 67788999999999999999999999999999999999999999999999999 8 999999999999999999999
Q ss_pred HHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccC-CCCChhHHHHHHHHHHHHHHHhhhcccCCCC---
Q psy4738 149 ALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTD-GDWPEIFYLFGILGVLWFVAWCFLCYNDPAS--- 224 (1188)
Q Consensus 149 ~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~-~gWr~~F~i~g~i~li~~il~~~~~~~~p~~--- 224 (1188)
....++.|..|+++|++..++.+.+..+|..++..++-.+.+..+ .+||+.+++..+++++..+. .++.||+|+-
T Consensus 122 ~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~-~~~~pESP~wL~~ 200 (451)
T PF00083_consen 122 VSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLL-RFFLPESPRWLLS 200 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccceecc
Confidence 999999999999999999999999999999998887766644311 35999999988888765444 4567887641
Q ss_pred CC----------C-----CCHhHHHHH----HHH----------Hhhhh---h------hHHHH-HHHHHHHHHHHHHHH
Q psy4738 225 HP----------Y-----ISQREKEYL----ADT----------IGCLA---R------NKIGH-DWGLFMISADLPKYM 265 (1188)
Q Consensus 225 ~~----------~-----~~~~~~~~~----~~~----------~~~~~---~------~~~~~-~~~~~~~~~~lp~yl 265 (1188)
+. + ..++|.++. ++. .+... + ..... ..+.+....+.|.++
T Consensus 201 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~ 280 (451)
T PF00083_consen 201 KGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIF 280 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccc
Confidence 00 0 000000000 000 00000 0 11111 112223344445554
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHH---h-hcch----
Q psy4738 266 KSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILAS---Y-AGCD---- 337 (1188)
Q Consensus 266 ~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~---~-~~~~---- 337 (1188)
++ .+.+.. -.......+...++.++...+.||+|||+.+ ..+....+++.+... . ....
T Consensus 281 ~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~----------i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (451)
T PF00083_consen 281 EN-AGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLL----------IIGLLLMAICSLILGIIFFLGVSSSSWW 347 (451)
T ss_pred cc-cccccc--ccccccccccccccccccccccccccccccc----------cccccccccccccccccccccccccccc
Confidence 43 455444 2223344556667777778999999987542 223333333222221 1 1111
Q ss_pred HHHHHHHHHHHHHHHh-hhhhHHHHhhcccCc-hhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCccchHHHHHHH-HH
Q psy4738 338 QILVVTLFTVGMAFMG-FFYPSLKVNALDLSP-NYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMW-LT 414 (1188)
Q Consensus 338 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~~~~~~~~~-~~ 414 (1188)
....+....+...... ...+.......|..| +.|+++.|+.+..+++++++.|.+...+.+..+. ...+...+ +.
T Consensus 348 ~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~--~~~~~i~~~~~ 425 (451)
T PF00083_consen 348 SILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGG--WGVFLIFAGVC 425 (451)
T ss_pred ccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccchhhHHHH
Confidence 1122222222222222 234455566677766 7899999999999999999999999998888772 22233333 33
Q ss_pred HHHHHHHHhhhhhcccchhhhhhHh
Q psy4738 415 AIVAGWFSDYLVSKNIFSVTVIRKI 439 (1188)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~k~ 439 (1188)
.+.......+.++.+.+..++..+.
T Consensus 426 ~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 426 LIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred HHHHhheeEEEeeCCCCCHHHHHhh
Confidence 3333444566677777777777664
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-15 Score=179.21 Aligned_cols=157 Identities=14% Similarity=0.073 Sum_probs=115.8
Q ss_pred cccccccccCcchhhhhHH--HHHHHHHHHHHHhhhhh-hhhhhCChhHHHHHHHH-HHHHHHHhh-h--hcccchhHHH
Q psy4738 566 PEESQQYEFDWDETTQGLI--LGSFYWGYVIMHIPGGL-LAQKFGGKHTLGFGILS-TAIFTILTP-M--AAYMGPVWLI 638 (1188)
Q Consensus 566 a~~~i~~~~~~s~~~~~~i--~s~~~l~~~~~~~~~G~-L~Dr~Grr~~l~~~~~~-~~i~~ll~a-~--a~~~~~~~l~ 638 (1188)
..|...+|.|.|.+++|.. .+...+...+.+|+.++ ..||+||||..++.+.+ .++.....+ + ..+ ...+++
T Consensus 23 ~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (390)
T TIGR02718 23 ALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVA-GAGWAV 101 (390)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchh-hHHHHH
Confidence 3467778899999999997 35667777778888844 79999999987555533 221122222 2 221 123355
Q ss_pred HHHHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHH
Q psy4738 639 VWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVV 718 (1188)
Q Consensus 639 ~~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~ 718 (1188)
..-++.++..+..-+..-.+..|+.++++++...+....+..+|.++|+.+.+.+.+..| ||..|++.+.+.++..+.
T Consensus 102 ~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~g--w~~~f~~~a~l~~~~~~~ 179 (390)
T TIGR02718 102 GLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFG--QRPAFLLVACVPLASLVC 179 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHH
Confidence 566667777777888888888888888888988888888889999999999999999888 999999999988776666
Q ss_pred HHhhccC
Q psy4738 719 WLFIGYS 725 (1188)
Q Consensus 719 ~~~~~~~ 725 (1188)
.++..|+
T Consensus 180 ~~~~~~~ 186 (390)
T TIGR02718 180 VLWLKDR 186 (390)
T ss_pred HHHcCCC
Confidence 5555443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-15 Score=168.68 Aligned_cols=157 Identities=22% Similarity=0.220 Sum_probs=136.6
Q ss_pred CcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhh-hhcccchhHHHHHHHH
Q psy4738 565 LPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTP-MAAYMGPVWLIVWRFF 643 (1188)
Q Consensus 565 ~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a-~a~~~~~~~l~~~R~l 643 (1188)
.-.|..++.|+++..|.++++..|+.+|.+..+|.|++.+|+|+|+-++.++.++++++.+.. .++..++..++++=|+
T Consensus 34 iLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFi 113 (422)
T COG0738 34 ILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFI 113 (422)
T ss_pred hhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 445899999999999999999999999999999999999999999999999999999999874 3333355668999999
Q ss_pred HHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc-----CC------------CCchHHHH
Q psy4738 644 EGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKL-----TN------------NYWPVVFY 706 (1188)
Q Consensus 644 ~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~-----~g------------~gWr~~F~ 706 (1188)
.|.|.+..-.+++.+++..-|+++..+++.+.+...++|.++||++++.+... .+ ..||++|.
T Consensus 114 la~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl 193 (422)
T COG0738 114 LASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYL 193 (422)
T ss_pred HHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHH
Confidence 99999999999999999999999999999999999999999999999988762 00 13999998
Q ss_pred HHHHHHHHHHHHHHh
Q psy4738 707 LFGAVAILWFVVWLF 721 (1188)
Q Consensus 707 i~~~~~~~~~~~~~~ 721 (1188)
..+.+.++..+....
T Consensus 194 ~~~~~lvll~v~~~~ 208 (422)
T COG0738 194 ILAGLLVLLAVLILL 208 (422)
T ss_pred HHHHHHHHHHHHHHh
Confidence 877776666554433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-13 Score=162.83 Aligned_cols=324 Identities=15% Similarity=0.117 Sum_probs=225.6
Q ss_pred hhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHH-HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHH
Q psy4738 73 EKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTL-GFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALN 151 (1188)
Q Consensus 73 ~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl-~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~ 151 (1188)
.+-.++..++..+-.++..|..|.++|+-|+||-+ .+...+..+++.+..+....+++...+.=++.-++.+.....-.
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn 148 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN 148 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557889999999999999999999999966654 45556666677777765334455555555555567777788888
Q ss_pred HHHhhccCCCch--------------------------hhHHHHHHHHHHHHHHHHHHHHHHhhhccC------CCCChh
Q psy4738 152 TLLAQWVPPTER--------------------------GKIGSFVFAGNQIGTVFSSFLSGFLLKYTD------GDWPEI 199 (1188)
Q Consensus 152 ~li~~~~p~~~R--------------------------g~~~gi~~~~~~lG~~ig~~lgg~l~~~~~------~gWr~~ 199 (1188)
+++-|..+++++ ++..+.-.+...+|.++...+.-.+....+ .+-|..
T Consensus 149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~ 228 (477)
T PF11700_consen 149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA 228 (477)
T ss_pred HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence 999999999988 999999888888998888777666644311 124888
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCCC--CHh---HHHHHHHHHhhhhh---------hHHHHHHHHHHHHHHHHHHH
Q psy4738 200 FYLFGILGVLWFVAWCFLCYNDPASHPYI--SQR---EKEYLADTIGCLAR---------NKIGHDWGLFMISADLPKYM 265 (1188)
Q Consensus 200 F~i~g~i~li~~il~~~~~~~~p~~~~~~--~~~---~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~lp~yl 265 (1188)
+.+.++.-++..+.+++..||.|..++.. ... .-+...+.+++..+ .++..+-+..++......|.
T Consensus 229 ~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a 308 (477)
T PF11700_consen 229 FLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYA 308 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888899998887622211 111 11122222222111 55555667888999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHH-h-----hcchHH
Q psy4738 266 KSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILAS-Y-----AGCDQI 339 (1188)
Q Consensus 266 ~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~-~-----~~~~~~ 339 (1188)
++++|++..+...+.....+.+++|+++.+++.||++.|.. +.....+... ..+++.... . ...+.+
T Consensus 309 ~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~------~~l~~~l~~~-~~i~~~g~~G~~~~~~g~~~~~ 381 (477)
T PF11700_consen 309 TEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK------RTLLISLILW-IIIPLYGLFGFWPSFFGLKSPW 381 (477)
T ss_pred HHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh------HHHHHHHHHH-HHHHHHHHHHhhhcccCcccHH
Confidence 99999999999999999999999999999999999998731 1111111111 111211111 0 122233
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhhcc-cCchhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCcc
Q psy4738 340 LVVTLFTVGMAFMGFFYPSLKVNALD-LSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVL 403 (1188)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~ 403 (1188)
...++-.+.+.+.+..++...+...+ .||++.+.-.|+.+..+...+.++|.+.|.+.+.+|+.
T Consensus 382 ~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~ 446 (477)
T PF11700_consen 382 EFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQ 446 (477)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 33333334445555555655555555 45578999999999999999999999999999999853
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-15 Score=166.11 Aligned_cols=117 Identities=17% Similarity=0.217 Sum_probs=107.2
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhcccchhHH
Q psy4738 576 WDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAA 655 (1188)
Q Consensus 576 ~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g~~~p~~ 655 (1188)
.+..-.|.+.+.|.+...+.++.+|.++||+|||+++++|++..++..++-+.+.|+ ..+++.|++.|+.-|-. ..+
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F--~afv~aR~l~Gi~kgnl-~v~ 141 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF--AAFVLARFLGGIFKGNL-SVI 141 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhccCch-HHH
Confidence 455567899999999999999999999999999999999999999999999999965 34777799999997754 677
Q ss_pred HHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4738 656 NQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLK 695 (1188)
Q Consensus 656 ~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~ 695 (1188)
.++++|.+++|+|++.++.++..+++|-++||.+||.+..
T Consensus 142 rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 142 RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 9999999999999999999999999999999999999988
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.4e-14 Score=160.53 Aligned_cols=263 Identities=11% Similarity=0.065 Sum_probs=186.4
Q ss_pred ccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhcc--------------
Q psy4738 127 QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT-------------- 192 (1188)
Q Consensus 127 ~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~-------------- 192 (1188)
.+++.+++.-++.|.|.+...++...++++..|+|++++.+++.+..+++|..++|.+++.+....
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~ 87 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAE 87 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHH
Confidence 789999999999999999999999999999999999999999999999999999999999988431
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhh-cccCCCCCCC-CCHhHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHHH
Q psy4738 193 DGDWPEIFYLFGILGVLWFVAWCFL-CYNDPASHPY-ISQREKEYLADTIGCLA-----RNKIGHDWGLFMISADLPKYM 265 (1188)
Q Consensus 193 ~~gWr~~F~i~g~i~li~~il~~~~-~~~~p~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~lp~yl 265 (1188)
..+||++|++.+.+.++..+.+.+. .||.+++++. ..+++.....+.++.+. ...++......+...|++.|+
T Consensus 88 ~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl 167 (310)
T TIGR01272 88 AAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVARVSSGDTTQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFL 167 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccccccccccccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0369999998877766665555444 2322111111 11111000011111111 134444445667889999999
Q ss_pred HHH--hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q psy4738 266 KSV--MKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVT 343 (1188)
Q Consensus 266 ~~~--~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~ 343 (1188)
++. +|++..+.+...+....+..+++++.+++.||+++|+. ..++.....++.+...... .... ..
T Consensus 168 ~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~----------l~~~~~l~~~~~~l~~~~~-~~~~-~~ 235 (310)
T TIGR01272 168 SDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRY----------LAFNAFLAVLLSIGAALTH-GYVA-MW 235 (310)
T ss_pred HhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH----------HHHHHHHHHHHHHHHHHcC-CHHH-HH
Confidence 864 69999999999999999999999999999999986432 2223333333332222222 2222 22
Q ss_pred HHHHHHHHHhhhhhHHHHhhcccCchhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCc
Q psy4738 344 LFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNNGV 402 (1188)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~ 402 (1188)
.+.+..++.+..+|.......+..|++.+++.++. ..+.+|+++.|.+.|.+.|..|.
T Consensus 236 ~~~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~ 293 (310)
T TIGR01272 236 FVLALGLFNSIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGI 293 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHhccc
Confidence 33345566777788877777777777778888875 67889999999999999998874
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.64 E-value=7e-13 Score=156.47 Aligned_cols=323 Identities=18% Similarity=0.170 Sum_probs=214.3
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccC-chHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhcc
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFG-GKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGT 145 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~G-rk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~ 145 (1188)
++.|.|..|+|.+.+.-.+...++++++|.++||++ +||++..+.++.++...+.... ++++.+++.-++..+....
T Consensus 30 ~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~--~~f~~~~~~~~l~~~~~~p 107 (400)
T PF03825_consen 30 ESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS--SSFWWLFVIMLLFSFFFSP 107 (400)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHcc
Confidence 567899999999999999999999999999999986 6778878777777776666666 8899999888888888888
Q ss_pred chhHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHH-HHHhhhccC-CCCChhHHHHHHHHHHHHHHHhhhcccCCC
Q psy4738 146 TFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFL-SGFLLKYTD-GDWPEIFYLFGILGVLWFVAWCFLCYNDPA 223 (1188)
Q Consensus 146 ~~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~l-gg~l~~~~~-~gWr~~F~i~g~i~li~~il~~~~~~~~p~ 223 (1188)
..|..-++..++.. ++++-.|-.-....+|-+++... ++.+....+ .+-.+.+++.+..+++..... +..|+.|.
T Consensus 108 ~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~-l~lp~~~~ 184 (400)
T PF03825_consen 108 TMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFA-LFLPKTPP 184 (400)
T ss_pred HHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHH-HhCCCCcc
Confidence 99999999888875 33333444444455555555332 233333311 133456777766655444333 33456552
Q ss_pred C-CCCCC--HhHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 224 S-HPYIS--QREKEYLADTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAG 295 (1188)
Q Consensus 224 ~-~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g 295 (1188)
+ +...+ +....+..+.++++.. ..+...........+.+.|+++..|.+....+.+.++..+..++.-...+
T Consensus 185 ~~~~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~ 264 (400)
T PF03825_consen 185 KRSAKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSG 264 (400)
T ss_pred ccccCCCcccccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2 21111 1111122223333222 33334445556778889999996668888888888888888888888888
Q ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH----HHHHHHhhhhhHHHHhhcccCc-hh
Q psy4738 296 WFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFT----VGMAFMGFFYPSLKVNALDLSP-NY 370 (1188)
Q Consensus 296 ~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p-~~ 370 (1188)
++..|++.| ....++....++=........++......... +-+...+........+..+..| +.
T Consensus 265 ~~~~r~g~~----------~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~ 334 (400)
T PF03825_consen 265 RFLKRFGIK----------WLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL 334 (400)
T ss_pred HHHHhcCHH----------HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc
Confidence 888888843 34555555555555555555333333222222 3444445555555566665554 78
Q ss_pred hHHHHHHHHHH-HhhhhhhhhHHHHhhccCCCccc
Q psy4738 371 AGTLMAIVNGI-GAISGIISPYLIGILVPNNGVLS 404 (1188)
Q Consensus 371 ~g~~~g~~~~~-~~lgg~i~p~l~g~l~~~~G~~~ 404 (1188)
|+++.++.+.. ..+|+.++..++|++.|+.|...
T Consensus 335 ~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~ 369 (400)
T PF03825_consen 335 RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARG 369 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh
Confidence 99999998876 46899999999999999988654
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.4e-14 Score=168.81 Aligned_cols=347 Identities=15% Similarity=0.130 Sum_probs=216.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHh
Q psy4738 11 ILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIM 90 (1188)
Q Consensus 11 ~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~ 90 (1188)
....++...++...+. .....+++.+.+ +++|.|.++.+...+...+.+.+-
T Consensus 26 ~~~~~~~~~y~~qGl~-~l~~~~~~~~l~---------------------------~~lg~s~~~i~~~~sl~~lpw~~K 77 (468)
T TIGR00788 26 VVLAIGLQVLFVKGIA-GLMRLPLSPMLT---------------------------DDLGLDGARYQRLVGLSSLGWALK 77 (468)
T ss_pred hHHHHHHHHHHHhhHH-HHhhhhhhHHHH---------------------------HhcCCCHHHHHHHHHHHHHHHHHH
Confidence 3445556667777777 455545555553 689999999999999999999996
Q ss_pred HhhHHHhhcccC-----chHHHHHHHHHHHHHHHHHHHhhhccHH-HHHHHHHHHHhhhccchhHHHHHHhhccCCCchh
Q psy4738 91 HIPGGLLAQKFG-----GKHTLGFGILSTAIFTLLTPFAARQSAN-WLIALRFFEGLGEGTTFPALNTLLAQWVPPTERG 164 (1188)
Q Consensus 91 ~~~~G~LaDr~G-----rk~vl~~~lll~~v~sll~a~a~~~s~~-~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg 164 (1188)
.+ +|+++||++ ||+.+..+.++.+ ...+..++..++.. ...+.+++.+++.+..-++.-++..|..+ |++.
T Consensus 78 ~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~-~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~ 154 (468)
T TIGR00788 78 PF-AGVMSDTFPLFGYTKRWYLVLSGLLGS-AILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS 154 (468)
T ss_pred HH-HHHHHHhcCCCCccchHHHHHHHHHHH-HHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC
Confidence 66 999999998 7888887776663 22223333224544 44458999999999999999999999998 5554
Q ss_pred h---HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCC-CCCCCCHh---------
Q psy4738 165 K---IGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA-SHPYISQR--------- 231 (1188)
Q Consensus 165 ~---~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~-~~~~~~~~--------- 231 (1188)
. ..+.......+|.++|+.++|.+.+. .|||.+|++.+.+.++..+. .++.+|+++ ..+...++
T Consensus 155 ~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~--~~~~~~f~~~a~l~ll~~~~-~~~~~E~~~~~~~~~~~~~~~~~~~~~ 231 (468)
T TIGR00788 155 AGPSLVSWMWGASATGGLISSLLGGPLLDK--TLTRILFLITAALLLLQLFV-SNLSKERRAFVRPRIGTYLEMNMALLT 231 (468)
T ss_pred cCCCeeeHHHHHHHHHHHHHHHHHHHHHHh--cCcchHHHHHHHHHHHHHHH-HHhcccccccccccccccchhhhhhhh
Confidence 4 34444455568999999999999998 89999999998888777443 344455431 11111110
Q ss_pred ------HHH---HHHHHHhhhhhhHHHHHHHH-HHHHHH-H-HH--HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 232 ------EKE---YLADTIGCLARNKIGHDWGL-FMISAD-L-PK--YMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWF 297 (1188)
Q Consensus 232 ------~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~-l-p~--yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~l 297 (1188)
.++ ...+.+++............ |..... . +. +.++.+|+++.+.|.......++.+++....+++
T Consensus 232 ~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~ 311 (468)
T TIGR00788 232 LGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRF 311 (468)
T ss_pred hhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 011 11111111111110000000 100000 0 11 2234689999999999999998888888888888
Q ss_pred HHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHh--------h-cchHHHHHHHHHHHHHHHhh-hhhHHHHhhcccC
Q psy4738 298 SDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASY--------A-GCDQILVVTLFTVGMAFMGF-FYPSLKVNALDLS 367 (1188)
Q Consensus 298 sdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~--------~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 367 (1188)
.+|++.| +. ..++.+..+.+.+.... . ..+.........+.....+. ..+.........+
T Consensus 312 ~~~~~~r---------~~-l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p 381 (468)
T TIGR00788 312 LKTFPYR---------LL-FGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCP 381 (468)
T ss_pred HhhCCHH---------HH-HHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCC
Confidence 7776643 22 23333333322211110 0 01121222222222233333 3444444444455
Q ss_pred chhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCC
Q psy4738 368 PNYAGTLMAIVNGIGAISGIISPYLIGILVPNNG 401 (1188)
Q Consensus 368 p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G 401 (1188)
++.+|+..|+.+++.++|+.+++.+++.+.+..|
T Consensus 382 ~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 382 SGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred CCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6889999999999999999999999999999888
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.7e-13 Score=160.75 Aligned_cols=325 Identities=10% Similarity=0.027 Sum_probs=190.6
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhccc----CchHHH-HHHHHHHHHHHHHHHHhh---hc--cHHHHHHHH
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKF----GGKHTL-GFGILSTAIFTLLTPFAA---RQ--SANWLIALR 136 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~----Grk~vl-~~~lll~~v~sll~a~a~---~~--s~~~lli~R 136 (1188)
+++|++..+.|.+.+...+..++..|+.|+++||. ||||.. ..+.+...+.+.+.-..+ .+ .....++.-
T Consensus 37 ~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (448)
T PRK09848 37 DVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTY 116 (448)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHH
Confidence 56899999999999999999999999999999997 766644 555554444444431111 01 123344455
Q ss_pred HHHHhhhccchhHHHHHHhhccC-CCchhhHHHHHHHHH-----HHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHH
Q psy4738 137 FFEGLGEGTTFPALNTLLAQWVP-PTERGKIGSFVFAGN-----QIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLW 210 (1188)
Q Consensus 137 ~l~Glg~g~~~p~~~~li~~~~p-~~~Rg~~~gi~~~~~-----~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~ 210 (1188)
.+.+++.+...+...++..+..+ ++||.+..++-..+. .+|..++|.+++...+....+|.....+.++++++.
T Consensus 117 ~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~ 196 (448)
T PRK09848 117 MGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVL 196 (448)
T ss_pred HHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence 67788778887777777676654 578998877655433 344555555555432110011221222333333333
Q ss_pred HHHHhhhcccCCCCCCCCCHhHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q psy4738 211 FVAWCFLCYNDPASHPYISQREKEYLADTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFL 285 (1188)
Q Consensus 211 ~il~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l 285 (1188)
.++.....+|++++++.. +.-++..++.++++.. ..++............|.|+++.+|.+....++......+
T Consensus 197 ~~~~~~~~~e~~~~~~~~-~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 275 (448)
T PRK09848 197 YFICFKSTRENVVRIVAQ-PSLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLV 275 (448)
T ss_pred HHHHHcCcEeccCCCccC-CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHH
Confidence 333333445543322111 1111122222222211 2333444555666677888888888877666665555567
Q ss_pred HHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHhhhhhHHHHhhc
Q psy4738 286 LMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAG-CDQILVVTLFTVGMAFMGFFYPSLKVNAL 364 (1188)
Q Consensus 286 ~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (1188)
+.+++.++.+++.||+++|+. ..++.....++.+.....+ .+.+.......+...+.+...+.......
T Consensus 276 ~~~~~~~l~~~l~~r~g~~~~----------~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~ 345 (448)
T PRK09848 276 GTVASAPLVPGMVARIGKKNT----------FLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEA 345 (448)
T ss_pred HHHHHHHHHHHHHHHhCcHHH----------HHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999986432 2333333333333333332 22333333233333344444455555555
Q ss_pred ccCc--------hhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCc
Q psy4738 365 DLSP--------NYAGTLMAIVNGIGAISGIISPYLIGILVPNNGV 402 (1188)
Q Consensus 365 ~~~p--------~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~ 402 (1188)
|..+ +++|...|+.+....+|..+++.+.+.+++..|+
T Consensus 346 ~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 346 DTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5543 2469999999999999999999999999887775
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.1e-14 Score=159.57 Aligned_cols=359 Identities=16% Similarity=0.153 Sum_probs=251.5
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHH
Q psy4738 5 CISQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFY 84 (1188)
Q Consensus 5 ~~~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~ 84 (1188)
.-++||.+++...+-.+.+.++...+++.--... ..|+ +.+..-|+.=+|+
T Consensus 39 Vy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~----------------------------~~Yg-s~~~~~wlsmIym 89 (480)
T KOG2563|consen 39 VYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVN----------------------------SFYG-SSSAADWLSMIYM 89 (480)
T ss_pred cchhHhHHHHHHHHHHhcCcchheeehhHHHHHH----------------------------HHhc-chHHHHHHHHHHH
Confidence 4568998888888888888888888876544443 5677 7777889999999
Q ss_pred HHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhc----cHH--HHHHHHHHHHhhhccchhHHHHHHhhcc
Q psy4738 85 WGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ----SAN--WLIALRFFEGLGEGTTFPALNTLLAQWV 158 (1188)
Q Consensus 85 lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~----s~~--~lli~R~l~Glg~g~~~p~~~~li~~~~ 158 (1188)
+.+.....++-|+.|++|-|..++.+..+..+++.+-..+..+ .++ .......+.+.++-.....-..+..-||
T Consensus 90 ~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF 169 (480)
T KOG2563|consen 90 VVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWF 169 (480)
T ss_pred HHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhC
Confidence 9999999999999999999999999999999999988777433 334 5667788888887777777778999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhcc----CCCCCh--hHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHhH
Q psy4738 159 PPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT----DGDWPE--IFYLFGILGVLWFVAWCFLCYNDPASHPYISQRE 232 (1188)
Q Consensus 159 p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~----~~gWr~--~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~~ 232 (1188)
|++||..+..+-..+.++|.++|.++...++.+. +.+|-- .|+..+.++.+..++..+..+++|..++...+..
T Consensus 170 ~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~ 249 (480)
T KOG2563|consen 170 PPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAA 249 (480)
T ss_pred CcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhh
Confidence 9999999999999999999999999999999874 346766 4776777766666777777777777666554333
Q ss_pred HH---HHH---HHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4738 233 KE---YLA---DTIGCLAR-NKIGHDWGLFMISADLPKYMKSV---MKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLV 302 (1188)
Q Consensus 233 ~~---~~~---~~~~~~~~-~~~~~~~~~~~~~~~lp~yl~~~---~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~ 302 (1188)
.+ +.+ +.++.+.. ..........+...-+++.++.. -|++...+|....+..+++.+++.+.|.+.||.+
T Consensus 250 ~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk 329 (480)
T KOG2563|consen 250 LQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTK 329 (480)
T ss_pred hhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 22 222 22222111 11111112223333444444422 4666678999999999999999999999999986
Q ss_pred ccCccchhHHHHHHHHHHHHHHHHH-HHHHHhh--cch-HHHHHHHHHHHHHHHhhhhhHHHHhhcccCchhhHHHHHHH
Q psy4738 303 SKDIFSVTVIRKIFTTIASVGPASG-VILASYA--GCD-QILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIV 378 (1188)
Q Consensus 303 ~r~~l~~~~~r~~~~~i~~~~~~~~-l~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~ 378 (1188)
+- |..+.+......++ +.+.... ... ..+......++.+..+.....+-.-++..+|..-++..|+.
T Consensus 330 ~f---------k~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll 400 (480)
T KOG2563|consen 330 KF---------KLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLL 400 (480)
T ss_pred hH---------HHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeE
Confidence 52 22222222223222 2222221 122 22333333333333333333334455667898889999999
Q ss_pred HHHHhhhhhhhhHHHHhhccCCC
Q psy4738 379 NGIGAISGIISPYLIGILVPNNG 401 (1188)
Q Consensus 379 ~~~~~lgg~i~p~l~g~l~~~~G 401 (1188)
|..+++.+.+-..+.+...+..+
T Consensus 401 ~~~gq~f~~~~~~~~~~~~~~~~ 423 (480)
T KOG2563|consen 401 NLSGQIFGVILVFIMGILAEDLG 423 (480)
T ss_pred EeehhHHHHHHHHHHHHHhhccC
Confidence 99999999999999999998877
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.2e-13 Score=159.55 Aligned_cols=127 Identities=18% Similarity=0.093 Sum_probs=104.1
Q ss_pred cccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhcccc
Q psy4738 572 YEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTT 651 (1188)
Q Consensus 572 ~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g~~ 651 (1188)
+.+|.++...++......++..++.++.+++.||+|+|+++..+.++..++.+...+.++.+.+.+++..++.|+|.+..
T Consensus 257 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~ 336 (448)
T PRK09848 257 YVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVT 336 (448)
T ss_pred eecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence 44555555445555555677888999999999999999999999999888888777665445666788889999999999
Q ss_pred hhHHHHHHHhccCCC-------cchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy4738 652 FPAANQLLAAWIPKT-------ERGKVGAFVWAGIIMGTVISSSLTGLLLKLTN 698 (1188)
Q Consensus 652 ~p~~~~~i~~~~~~~-------~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g 698 (1188)
.+...++..|..|.+ ++|...|+++....+|..+|+.+.+.+.+..|
T Consensus 337 ~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G 390 (448)
T PRK09848 337 MTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG 390 (448)
T ss_pred HHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999988754 35999999999999999999999998876544
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.5e-15 Score=154.11 Aligned_cols=156 Identities=14% Similarity=0.161 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHhhhhheeeccccccccCCCCCCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhh-hCC
Q psy4738 530 RLVFWISFGVIMITNVAYVFMGSGKIQSWNEPRHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQK-FGG 608 (1188)
Q Consensus 530 r~vf~i~a~i~l~~~l~~l~~~~~~~q~w~~~~~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr-~Gr 608 (1188)
...|.....+++.++-.|.+. | ....-..+.+.|.+++.++..++-+.|.+...+...+.|++.|| +|-
T Consensus 40 ~hr~m~lv~mc~lgfgsyfcy--------d--~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgi 109 (459)
T KOG4686|consen 40 GHRFMALVFMCLLGFGSYFCY--------D--APGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGI 109 (459)
T ss_pred hhHHHHHHHHHHhcccceeec--------C--CchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhh
Confidence 345555666666666666532 2 11122245567788888899999999999999999999999996 788
Q ss_pred hhHHHHHHHHHHHHHHHhh---hhcccchhHHHHHHHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHH
Q psy4738 609 KHTLGFGILSTAIFTILTP---MAAYMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVI 685 (1188)
Q Consensus 609 r~~l~~~~~~~~i~~ll~a---~a~~~~~~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~ 685 (1188)
|..-.+-+....++.++.+ ..+ ++|.+..+||+.|+|.-..-.+-+.+...||+.+|.+.++|+..+..-+|+.+
T Consensus 110 r~gtii~~~fv~~GqliFa~Ggi~~--aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gstv 187 (459)
T KOG4686|consen 110 RLGTIILCIFVFLGQLIFAAGGISH--AFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTV 187 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHhchHHH--HHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhcee
Confidence 7765555555566666544 345 78999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhhhcC
Q psy4738 686 SSSLTGLLLKLT 697 (1188)
Q Consensus 686 g~~l~g~l~~~~ 697 (1188)
--.+-+++.+..
T Consensus 188 Nf~lm~~ly~~~ 199 (459)
T KOG4686|consen 188 NFLLMPFLYDTM 199 (459)
T ss_pred eeeecHHHHHHH
Confidence 877777776643
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4e-13 Score=163.75 Aligned_cols=326 Identities=11% Similarity=0.013 Sum_probs=201.5
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhc----ccCc-hHHHHHHHHHHHHHHHHHHHhhh--c--cHHHHHHHHH
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQ----KFGG-KHTLGFGILSTAIFTLLTPFAAR--Q--SANWLIALRF 137 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaD----r~Gr-k~vl~~~lll~~v~sll~a~a~~--~--s~~~lli~R~ 137 (1188)
+.+|+++.+.|.+..+.-+--++..|+.|.++| |+|| |+.++.+.+..+++..+.-..+. + .+..+++.-.
T Consensus 35 ~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~ 114 (473)
T PRK10429 35 DVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYI 114 (473)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 567999999999999999999999999999999 6798 66666777777777655533210 1 1345666667
Q ss_pred HHHhhhccchhHHHHHHhhcc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CCCCChhHHHHHHHHHHHH
Q psy4738 138 FEGLGEGTTFPALNTLLAQWV-PPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT-----DGDWPEIFYLFGILGVLWF 211 (1188)
Q Consensus 138 l~Glg~g~~~p~~~~li~~~~-p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~-----~~gWr~~F~i~g~i~li~~ 211 (1188)
+.+++.....+.-.++..|.. +++||.+..++-.....+|..+.+.+...+.+.. ..||+....+.+++.++..
T Consensus 115 l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~ 194 (473)
T PRK10429 115 LWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVST 194 (473)
T ss_pred HHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 777877788888889999998 5899999999866666666555544444332220 1367777777777776666
Q ss_pred HHHhhhcccCCCCCC-CCCHhH----HHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Q psy4738 212 VAWCFLCYNDPASHP-YISQRE----KEYLADTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSS 281 (1188)
Q Consensus 212 il~~~~~~~~p~~~~-~~~~~~----~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~ 281 (1188)
+..++..+|.++.+. ..++++ ++..+...+++.. ..+..+...+......+.|++...+ +....+.+..
T Consensus 195 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~ 273 (473)
T PRK10429 195 IITLRNVHEVYSSDNQVSAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLS 273 (473)
T ss_pred HHHHcCceecCCccccccccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHH
Confidence 555555666532111 011111 1112111122111 2233333444444555555554444 4556666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHH---Hhh-cchHHHHHHHHHHHHHHHhhhhh
Q psy4738 282 LPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILA---SYA-GCDQILVVTLFTVGMAFMGFFYP 357 (1188)
Q Consensus 282 ~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~ 357 (1188)
...+..+++.++.++++||+++|+. . .++.....++.+.. ... ..+.....+...+...+.+....
T Consensus 274 ~~~i~~ii~~~~~~~l~~r~gkk~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 274 YAGAANLVTLILFPRLVKSLSRRIL---------W-AGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHH---------H-HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 7778889999999999999997532 1 12222212111111 112 22233333333333334444444
Q ss_pred HHHHhhcccCc--------hhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCcc
Q psy4738 358 SLKVNALDLSP--------NYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVL 403 (1188)
Q Consensus 358 ~~~~~~~~~~p--------~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~ 403 (1188)
...+...|..+ +..|...|..+....++..+++.+.|.+++..|+.
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy~ 397 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGYV 397 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 44445555422 44677999999999999999999999999887763
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-12 Score=155.50 Aligned_cols=354 Identities=11% Similarity=0.023 Sum_probs=206.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHH
Q psy4738 248 IGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASG 327 (1188)
Q Consensus 248 ~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~ 327 (1188)
+..+.....+..+++.|+++++|+++...|.+.+..-+...+..++.|+++||...|.- + ||.....+....++.
T Consensus 16 ~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~G----r-rrp~il~g~i~~~i~ 90 (473)
T PRK10429 16 FGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWG----K-FKPWILIGTLANSVV 90 (473)
T ss_pred hHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCC----C-cchhHhhhhHHHHHH
Confidence 44556677788899999999999999999999999999999999999999996532211 0 344445555555554
Q ss_pred HHHHHhhc--chH--H-HHHHHHHHHHHHHhhhhhHHHHhhcccC--chhhHHHHHHHHHHHhhhhhhhhHHHHhhccCC
Q psy4738 328 VILASYAG--CDQ--I-LVVTLFTVGMAFMGFFYPSLKVNALDLS--PNYAGTLMAIVNGIGAISGIISPYLIGILVPNN 400 (1188)
Q Consensus 328 l~~~~~~~--~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~ 400 (1188)
+..+...+ ++. . ...+...+...+.......+.+...++. +++|....+......++++.+.+.+...+.+..
T Consensus 91 ~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~ 170 (473)
T PRK10429 91 LFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYV 170 (473)
T ss_pred HHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44333322 111 1 1122222222333334444555556655 578999888888888888777766665554433
Q ss_pred Ccc-c----hHHHHHHHHHHHHHHHHHhhhhhcccc-hh--h-hhhHhhhhhccccchhhhHhhhccCCchHHHHHHHHH
Q psy4738 401 GVL-S----SLPFLLMWLTAIVAGWFSDYLVSKNIF-SV--T-VIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTV 471 (1188)
Q Consensus 401 G~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~-~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 471 (1188)
|.. . .....+.++..++..+...+..+++.+ .. + +..|.
T Consensus 171 g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-------------------------------- 218 (473)
T PRK10429 171 GGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSHL-------------------------------- 218 (473)
T ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccCC--------------------------------
Confidence 321 1 112222222223333333322222110 00 0 00000
Q ss_pred HHhhhcccccccceecccCCCcchhHHHHHHhhhhhccccccceeeeeeccCcccchhHHHHHHHHHHHHHhhhhheeec
Q psy4738 472 GMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNSTMLEWRLVFWISFGVIMITNVAYVFMG 551 (1188)
Q Consensus 472 ~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~igp~i~~~l~~~~t~~~wr~vf~i~a~i~l~~~l~~l~~~ 551 (1188)
... ...+. +. +...++...................
T Consensus 219 ------------------------~~~----~~~~~------------~~---~n~~~~~ll~~~~~~~~~~~~~~~~-- 253 (473)
T PRK10429 219 ------------------------TLK----DIVAL------------IY---KNDQLSCLLGMALAYNIASNIINGF-- 253 (473)
T ss_pred ------------------------CHH----HHHHH------------Hh---cCHHHHHHHHHHHHHHHHHHHHhhh--
Confidence 000 00000 00 0122222211111111111110000
Q ss_pred cccccccCCCCCCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhh---
Q psy4738 552 SGKIQSWNEPRHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPM--- 628 (1188)
Q Consensus 552 ~~~~q~w~~~~~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~--- 628 (1188)
.+...++..-+++..+++.+...++..++.+++++++||+|+|+.+..+..+..++.+...+
T Consensus 254 ---------------~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
T PRK10429 254 ---------------AIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGL 318 (473)
T ss_pred ---------------eeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00111111113445667777777889999999999999999999999888877766665432
Q ss_pred hcccchhHHHHHHHHHHhhcccchhHHHHHHHhccC-------CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy4738 629 AAYMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIP-------KTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTN 698 (1188)
Q Consensus 629 a~~~~~~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~-------~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g 698 (1188)
.++.+.+.+++.-++.|++.+...+...+++.|..| .++.|..+|......-+|..+|+.+.|.+.+..|
T Consensus 319 ~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 319 AAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 222245567778899999999999999999999965 3445668999999999999999999999886544
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.4e-13 Score=161.32 Aligned_cols=327 Identities=17% Similarity=0.213 Sum_probs=233.3
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhc----ccCchHH-HHHHHHHHHHHHHHHHHh-h-h----ccHHHHHHH
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQ----KFGGKHT-LGFGILSTAIFTLLTPFA-A-R----QSANWLIAL 135 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaD----r~Grk~v-l~~~lll~~v~sll~a~a-~-~----~s~~~lli~ 135 (1188)
+.+++++...|.+..+.-+--++..|+.|.++| |+||||. ++.+.+..+++..++... + . .....+.+.
T Consensus 30 ~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~ 109 (428)
T PF13347_consen 30 DVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVF 109 (428)
T ss_pred HHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHH
Confidence 567999999999999999999999999999999 8997665 446777777766666543 1 1 123345777
Q ss_pred HHHHHhhhccchhHHHHHHhhccC-CCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccC-----CCCChhHHHHHHHHHH
Q psy4738 136 RFFEGLGEGTTFPALNTLLAQWVP-PTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTD-----GDWPEIFYLFGILGVL 209 (1188)
Q Consensus 136 R~l~Glg~g~~~p~~~~li~~~~p-~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~-----~gWr~~F~i~g~i~li 209 (1188)
-++-.++.......-.++..|..+ ++||.+..++-.....+|..+...+.+.+.+..+ .+|++..++.+++.++
T Consensus 110 ~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v 189 (428)
T PF13347_consen 110 YILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLV 189 (428)
T ss_pred HHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHH
Confidence 777788888888888999999998 5799999999999899999777777777665421 1699999999999999
Q ss_pred HHHHHhhhcccCCCCCCCC--CHhHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy4738 210 WFVAWCFLCYNDPASHPYI--SQREKEYLADTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSL 282 (1188)
Q Consensus 210 ~~il~~~~~~~~p~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~ 282 (1188)
..++..+..+|++++.+.. +.+-++..+...+++.. ..++...+........+.|.++.++.+ ...+.....
T Consensus 190 ~~~i~~~~~ke~~~~~~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~ 268 (428)
T PF13347_consen 190 FFLITFFFVKERSVEVTEQEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLI 268 (428)
T ss_pred HhhhhhheeeeccccccccccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHH
Confidence 8888888888722221111 11112222222222111 444444556666677888889988888 556777778
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHhhhhhHHHH
Q psy4738 283 PFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAG-CDQILVVTLFTVGMAFMGFFYPSLKV 361 (1188)
Q Consensus 283 ~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (1188)
..+...++.++.++++||+++|+. ...+....+.+.+.....+ .+.+...+...+...+.+........
T Consensus 269 ~~~~~~v~~~~~~~l~~r~gk~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a 338 (428)
T PF13347_consen 269 FFVASIVGSPLWGRLSKRFGKKKV----------YIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWA 338 (428)
T ss_pred HHHHHHHHHHHHHHHHHHccceee----------hhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhccccccccc
Confidence 889999999999999999998764 3344444444444444444 44555555555555555555555555
Q ss_pred hhcccCc--------hhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCccc
Q psy4738 362 NALDLSP--------NYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLS 404 (1188)
Q Consensus 362 ~~~~~~p--------~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~ 404 (1188)
...|..+ +..|...|+.++...++..+++.+.+.+++..|+..
T Consensus 339 ~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~ 389 (428)
T PF13347_consen 339 MLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYDA 389 (428)
T ss_pred ccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCC
Confidence 5555443 447999999999999999999999999988877643
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-12 Score=157.49 Aligned_cols=346 Identities=14% Similarity=0.099 Sum_probs=203.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHH
Q psy4738 249 GHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGV 328 (1188)
Q Consensus 249 ~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l 328 (1188)
..+.....+..+++.|+.+++|++....|.+.+..-+...+..++.|+++||.+.|.- + ||.....+....++..
T Consensus 20 ~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~G----r-rrp~il~~~~~~~i~~ 94 (444)
T PRK09669 20 ACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHG----Q-FRPYLLWFAIPFGVVC 94 (444)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCC----C-cchhHHHHHHHHHHHH
Confidence 3444456677899999999999999999999999999999999999999999664421 1 3333444434333333
Q ss_pred HHHHhhcc---h--HHHHHHHHHHHHHHHhhhhhHHHHhhcccC--chhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCC
Q psy4738 329 ILASYAGC---D--QILVVTLFTVGMAFMGFFYPSLKVNALDLS--PNYAGTLMAIVNGIGAISGIISPYLIGILVPNNG 401 (1188)
Q Consensus 329 ~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G 401 (1188)
......+. . .....+...+...........+.+...+.. +++|+...+......++|+.+++.+...+....|
T Consensus 95 ~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~ 174 (444)
T PRK09669 95 LLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILG 174 (444)
T ss_pred HHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33222221 1 112221111222222233333444555544 4779998899999999998888877666655443
Q ss_pred cc-----chHHHHHHHHHHHHHHHHHhhhhhcccchhhh-hhHhhhhhccccchhhhHhhhccCCchHHHHHHHHHHHhh
Q psy4738 402 VL-----SSLPFLLMWLTAIVAGWFSDYLVSKNIFSVTV-IRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAF 475 (1188)
Q Consensus 402 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 475 (1188)
.. +...+.+.++++++..+......+++.++.++ ..+... .+-.
T Consensus 175 ~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~~~~~~~~~-----------~~~~------------------- 224 (444)
T PRK09669 175 KGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEVDNSSSVWK-----------DLKL------------------- 224 (444)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCCcCCCCHHH-----------HHHH-------------------
Confidence 21 12233333333333333333332222111110 000000 0000
Q ss_pred hcccccccceecccCCCcchhHHHHHHhhhhhccccccceeeeeeccCcccchhHHHHHHHHHHHHH-----hhhhheee
Q psy4738 476 MGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNSTMLEWRLVFWISFGVIMI-----TNVAYVFM 550 (1188)
Q Consensus 476 ~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~igp~i~~~l~~~~t~~~wr~vf~i~a~i~l~-----~~l~~l~~ 550 (1188)
+ .+...|+............ ....|.
T Consensus 225 --------------------------------------------~---~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~-- 255 (444)
T PRK09669 225 --------------------------------------------L---LGNSQWRIMFIFNVVLLTAVVTRGGATLYY-- 255 (444)
T ss_pred --------------------------------------------H---hCCchHHHHHHHHHHHHHHHHHHhhhhhee--
Confidence 0 0111222221111110000 011111
Q ss_pred ccccccccCCCCCCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhc
Q psy4738 551 GSGKIQSWNEPRHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAA 630 (1188)
Q Consensus 551 ~~~~~q~w~~~~~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~ 630 (1188)
.+..++ +++..+.+.....++..++.+++++++||+|+|+.+..+.+...+..+...+.+
T Consensus 256 -------------------~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~ 315 (444)
T PRK09669 256 -------------------VNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP 315 (444)
T ss_pred -------------------eeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC
Confidence 001111 123344566677788888889999999999999999988877665544333332
Q ss_pred ccchhHHHHHHHHHHhhcccchhHHHHHHHhccC-------CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy4738 631 YMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIP-------KTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTN 698 (1188)
Q Consensus 631 ~~~~~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~-------~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g 698 (1188)
..+.+.+++.-++.|++.+...+...++++|..+ +++.|...+.++....+|..+|+.++|.+.+..|
T Consensus 316 ~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 316 PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2245667888899999999999999999999885 2335667889999999999999999999887655
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-12 Score=152.07 Aligned_cols=380 Identities=17% Similarity=0.113 Sum_probs=233.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHH
Q psy4738 246 NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPA 325 (1188)
Q Consensus 246 ~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~ 325 (1188)
..+.....+.....+.|.++++..|+|..+.|.+.+...+...+.+++.|.++||++.||. ..+...+..+..+
T Consensus 15 ~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~------Ll~~i~~l~~l~~ 88 (412)
T PF01306_consen 15 FYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKH------LLWFIAILLLLFG 88 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSH------HHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHH------HHHHHHHHHHHHH
Confidence 3455555667778889999999999999999999999999999999999999999998763 1122222211122
Q ss_pred HHHH--HHHhhcchHHHHHHHHHHHHHHHhhhh----hHHHHhhcccCchhhHHHHHHHHHHHhhhhhhhhHHHHhhccC
Q psy4738 326 SGVI--LASYAGCDQILVVTLFTVGMAFMGFFY----PSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPN 399 (1188)
Q Consensus 326 ~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~ 399 (1188)
..+. ..+....+.++ ...++....+... |..-++.++. .+..+.-.|=.-..+.+|.+++..+.|.+.+.
T Consensus 89 pff~~v~~pll~~n~~l---g~iig~i~l~~~f~~~~~~~Ea~~er~-sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i 164 (412)
T PF01306_consen 89 PFFIYVFGPLLQSNFWL---GAIIGGIYLGLVFNAGVPLSEAYAERV-SRRNGFEYGRARMWGSIGFAIASLLAGILFNI 164 (412)
T ss_dssp HHHHHTHHHHHHTT-HH---HHHHTTTTTTTTTTTHHHHHHHHHHHH-HHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcccchHHHHHHHHH-HHHhcCCcchHHHHhhHHHHHHHHHhheeeee
Confidence 2221 11111122211 1122222222221 2222222221 12234445556677889999999999998875
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhhhhhcccch--hhh---hhHhhhhhccccchhhhHhhhccCCchHHHHHHHHHHHh
Q psy4738 400 NGVLSSLPFLLMWLTAIVAGWFSDYLVSKNIFS--VTV---IRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMA 474 (1188)
Q Consensus 400 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 474 (1188)
. ....+++.....++..++....+..+.++ ..+ .++.-... --+..
T Consensus 165 ~---p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~------------------ 215 (412)
T PF01306_consen 165 N---PNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSL--------KDVLS------------------ 215 (412)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------H--------HHHHH------------------
T ss_pred C---ccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcH--------HHHHH------------------
Confidence 3 23444544444333333333222111110 000 01100000 00000
Q ss_pred hhcccccccceecccCCCcchhHHHHHHhhhhhccccccceeeeeeccCcccchhHHHHHHHHHHHHHhhhhheeecccc
Q psy4738 475 FMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNSTMLEWRLVFWISFGVIMITNVAYVFMGSGK 554 (1188)
Q Consensus 475 ~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~igp~i~~~l~~~~t~~~wr~vf~i~a~i~l~~~l~~l~~~~~~ 554 (1188)
+. +.+.-|..+..+.+....-...+.- ++.
T Consensus 216 ---------------------------------------------l~--k~~~fw~~~l~v~g~~~~Y~vfdqq-f~~-- 245 (412)
T PF01306_consen 216 ---------------------------------------------LF--KMRNFWFFVLFVIGVAAIYDVFDQQ-FPI-- 245 (412)
T ss_dssp ---------------------------------------------HT--TSHHHHHHHHHHHHHHHHHHHHHHH-HHH--
T ss_pred ---------------------------------------------Hh--cchhHHHHHHHHHHHHHHHHHHHHH-HHH--
Confidence 00 2233344333333322222211100 000
Q ss_pred ccccCCCCCCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccch
Q psy4738 555 IQSWNEPRHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGP 634 (1188)
Q Consensus 555 ~q~w~~~~~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~ 634 (1188)
--...-++-+.++..+|.+.+.-.+..++...+..++.+|+|.|+.++++..+.++=.+++++++ +.
T Consensus 246 -----------y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~--~~ 312 (412)
T PF01306_consen 246 -----------YFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFAT--NP 312 (412)
T ss_dssp -----------HHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----SH
T ss_pred -----------HHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhc--ch
Confidence 00001112234556789999999999999999999999999999999999999999999999999 77
Q ss_pred hHHHHHHHHHHhhcccchhHHHHHHHhccCCCcchhHHHHH-HHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHH
Q psy4738 635 VWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFV-WAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAI 713 (1188)
Q Consensus 635 ~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~-~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~ 713 (1188)
+.+.+.+.+.|+-.+....++..++++.+|+|..++...+. +...++|.++.+.++|.+-++.| .|..|++.+.+.+
T Consensus 313 ~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G--~~~tylimg~iv~ 390 (412)
T PF01306_consen 313 WVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG--FQHTYLIMGLIVL 390 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC--cHHHHHHHHHHHH
Confidence 88999999999999999999999999999999988988884 67889999999999999999988 9999999999988
Q ss_pred HHHHHHHhhccCCCCC
Q psy4738 714 LWFVVWLFIGYSEPGS 729 (1188)
Q Consensus 714 ~~~~~~~~~~~~~pe~ 729 (1188)
+..++..+.+++++++
T Consensus 391 ~~~li~~f~l~~~~~~ 406 (412)
T PF01306_consen 391 PFTLISAFTLKKDKKQ 406 (412)
T ss_dssp HHHHHHHHHS--SSST
T ss_pred HHHHHheeeecCCCcc
Confidence 8888888887765443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-11 Score=149.34 Aligned_cols=348 Identities=17% Similarity=0.112 Sum_probs=229.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHhhh
Q psy4738 277 GVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASY-AGCDQILVVTLFTVGMAFMGFF 355 (1188)
Q Consensus 277 g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 355 (1188)
+...++..+...+..++.|-++|+-++| |....+.......+...+.+ .+.+.....++++++..+....
T Consensus 73 ~~~~sis~l~~all~P~lGa~aD~~~~R---------k~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~ 143 (477)
T PF11700_consen 73 LYANSISGLLQALLAPFLGAIADYGGRR---------KRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEAS 143 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccc---------hHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHH
Confidence 4567778888888999999999988875 33333333333333333333 3444566666677777666666
Q ss_pred hhHHHHhhcccCc-hhh--------------------------HHHHHHHHHHHhhhhhhhhHHHHhhccCCCcc-----
Q psy4738 356 YPSLKVNALDLSP-NYA--------------------------GTLMAIVNGIGAISGIISPYLIGILVPNNGVL----- 403 (1188)
Q Consensus 356 ~~~~~~~~~~~~p-~~~--------------------------g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~----- 403 (1188)
...+.++..++.+ +.+ +..++.-...+++|+.+.-.+.-.+....+..
T Consensus 144 ~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~ 223 (477)
T PF11700_consen 144 NVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTW 223 (477)
T ss_pred HHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccch
Confidence 6677777777665 445 89999999999999998777665554433332
Q ss_pred -chHHHHHHHHHHHHHHHH-Hhhhhhccc-chhhhhhHhhhhhccccchhhhHhhhccCCchHHHHHHHHHHHhhhcccc
Q psy4738 404 -SSLPFLLMWLTAIVAGWF-SDYLVSKNI-FSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFY 480 (1188)
Q Consensus 404 -~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~ 480 (1188)
....+...++--++..+. ..+.+++++ ++.+..++.+
T Consensus 224 ~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 263 (477)
T PF11700_consen 224 AIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYL---------------------------------------- 263 (477)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHH----------------------------------------
Confidence 233344444444444443 333344433 1111111100
Q ss_pred cccceecccCCCcchhHHHHHHhhhhhccccccceeeeeeccCcccchhHHHHHHH-HHHHHHhhhhheeeccccccccC
Q psy4738 481 PSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNSTMLEWRLVFWIS-FGVIMITNVAYVFMGSGKIQSWN 559 (1188)
Q Consensus 481 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~igp~i~~~l~~~~t~~~wr~vf~i~-a~i~l~~~l~~l~~~~~~~q~w~ 559 (1188)
....+++... + ++..+.|.++..+ +-.+....+..+
T Consensus 264 ---------------------~~g~~~l~~t--------~---k~~~~~~~~~~fLia~~l~~dg~~ti----------- 300 (477)
T PF11700_consen 264 ---------------------RFGFKRLWRT--------F---KEIRKLRQLFLFLIAYFLYSDGVNTI----------- 300 (477)
T ss_pred ---------------------HHHHHHHHHH--------H---HHHHhChHHHHHHHHHHHHHHHHHHH-----------
Confidence 0000000000 0 1112233333322 212111111111
Q ss_pred CCCCCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCCh--hHHHHHHHHHHHHHHHhhh--------h
Q psy4738 560 EPRHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGK--HTLGFGILSTAIFTILTPM--------A 629 (1188)
Q Consensus 560 ~~~~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr--~~l~~~~~~~~i~~ll~a~--------a 629 (1188)
......--++++|++..+...+.-.-.+...++.+.+|++.||+|.| +++..+++++.+..+...+ .
T Consensus 301 ---~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~ 377 (477)
T PF11700_consen 301 ---ISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGL 377 (477)
T ss_pred ---HHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCc
Confidence 00111223468999999999999999999999999999999999999 9999999888666665544 4
Q ss_pred cccchhHHHHHHHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHH
Q psy4738 630 AYMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFG 709 (1188)
Q Consensus 630 ~~~~~~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~ 709 (1188)
+ +.|++++.-++.|+..|+..+.+-++.++..|+++.+..+|++....-..+.+||++-|.+.+..|+ -|+.|+...
T Consensus 378 ~--~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~-~r~g~~~l~ 454 (477)
T PF11700_consen 378 K--SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS-QRYGFLFLL 454 (477)
T ss_pred c--cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-chhHHHHHH
Confidence 4 5678999999999999999999999999999999999999999999999999999999999988753 788888777
Q ss_pred HHHHHHHHHHHhh
Q psy4738 710 AVAILWFVVWLFI 722 (1188)
Q Consensus 710 ~~~~~~~~~~~~~ 722 (1188)
++.++..++.+++
T Consensus 455 ~lf~~gl~ll~~v 467 (477)
T PF11700_consen 455 VLFLIGLILLFFV 467 (477)
T ss_pred HHHHHHHHHHhhc
Confidence 7766666655444
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-12 Score=155.35 Aligned_cols=394 Identities=13% Similarity=0.037 Sum_probs=229.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH-H
Q psy4738 247 KIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGP-A 325 (1188)
Q Consensus 247 ~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~-~ 325 (1188)
++..... +.....++.++++.+|+|..+.+.+.+...+...+- .+.|.++||++... .-||....++.+.. .
T Consensus 35 y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K-~l~g~l~D~~~i~G-----~rRr~~l~~~~~l~~~ 107 (468)
T TIGR00788 35 LFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALK-PFAGVMSDTFPLFG-----YTKRWYLVLSGLLGSA 107 (468)
T ss_pred HHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCC-----ccchHHHHHHHHHHHH
Confidence 4444455 666777888999889999999988888888877774 45999999996211 11444444444443 2
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCchhh---HHHHHHHHHHHhhhhhhhhHHHHhhccCCCc
Q psy4738 326 SGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYA---GTLMAIVNGIGAISGIISPYLIGILVPNNGV 402 (1188)
Q Consensus 326 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~ 402 (1188)
..+..+....+........+.+..++.+..-...-....|..++.+ +..........++|..+++.+.|.+.+..+
T Consensus 108 ~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~- 186 (468)
T TIGR00788 108 ILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTL- 186 (468)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 3322222222223333323333344444443344444444433332 334444445566899999999999998876
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhhhcccchhhh-hhHhhhhhccccchhhhHhhhccCCchHHHHHHHHHHHhhhccccc
Q psy4738 403 LSSLPFLLMWLTAIVAGWFSDYLVSKNIFSVTV-IRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYP 481 (1188)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~ 481 (1188)
+...+.+.+...++......+.++++.+..++ .++.... |...
T Consensus 187 -~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~-----------------~~~~------------------ 230 (468)
T TIGR00788 187 -TRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMN-----------------MALL------------------ 230 (468)
T ss_pred -cchHHHHHHHHHHHHHHHHHhcccccccccccccccchhh-----------------hhhh------------------
Confidence 44455555555554433334444432111111 0110000 0000
Q ss_pred ccceecccCCCcchhHHHHHHhhhhhccccccceeeeeeccCcccchhHHHHHHHHHHHHHhhhhheeeccccccccCCC
Q psy4738 482 SLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNSTMLEWRLVFWISFGVIMITNVAYVFMGSGKIQSWNEP 561 (1188)
Q Consensus 482 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~igp~i~~~l~~~~t~~~wr~vf~i~a~i~l~~~l~~l~~~~~~~q~w~~~ 561 (1188)
.+ +......+....+.. .+ ++ +.++.....+++. |......
T Consensus 231 ---------~~---~~~~~~~~~~~~l~~--------~l---~~----~~i~~~l~fifl~----~~~~~~~-------- 271 (468)
T TIGR00788 231 ---------TL---GVLANVKVQILGLRG--------AI---QL----LEIAKPLIFIFLS----YANLPGA-------- 271 (468)
T ss_pred ---------hh---hHHHHHHHHHHHHHH--------HH---hc----HHHHHHHHHHHHH----HhhcCCC--------
Confidence 00 000000000000000 00 01 1122211111110 1100000
Q ss_pred CCCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhc---c-----cc
Q psy4738 562 RHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAA---Y-----MG 633 (1188)
Q Consensus 562 ~~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~---~-----~~ 633 (1188)
....-. ..++++|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++.+...... | .+
T Consensus 272 ~~~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~ 350 (468)
T TIGR00788 272 SGSVFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISD 350 (468)
T ss_pred CceeEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCC
Confidence 000000 12357899999999999999999999999999999999999999999999999887653111 0 01
Q ss_pred hhHHHHHHHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-----CCchHHHHHH
Q psy4738 634 PVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTN-----NYWPVVFYLF 708 (1188)
Q Consensus 634 ~~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g-----~gWr~~F~i~ 708 (1188)
.+.....-++++++.+..+.....++.+..|++++|+.+++.++..++|..+++.+++.+.++.| ...+|...+.
T Consensus 351 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i 430 (468)
T TIGR00788 351 EVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILG 430 (468)
T ss_pred eeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHH
Confidence 23466678899999999999999999999999999999999999999999999999999998766 3344544333
Q ss_pred H-HHHHHHHHHHHhhccC
Q psy4738 709 G-AVAILWFVVWLFIGYS 725 (1188)
Q Consensus 709 ~-~~~~~~~~~~~~~~~~ 725 (1188)
. +..++...+. +++||
T Consensus 431 ~~~~~l~~l~~~-~llP~ 447 (468)
T TIGR00788 431 HSLAPLLPLPLL-HLLPR 447 (468)
T ss_pred HHHHHHHHHHHH-HhCCC
Confidence 3 3333333333 46665
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-12 Score=154.46 Aligned_cols=138 Identities=20% Similarity=0.238 Sum_probs=117.2
Q ss_pred ccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhh-CChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhcc
Q psy4738 571 QYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKF-GGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEG 649 (1188)
Q Consensus 571 ~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~-Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g 649 (1188)
.+++|.++.+.+++.+.|.....+++++.|+++||+ ||||++..+.++.+++.++.+..++ +...+++.-.+.++|.|
T Consensus 37 ~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~-~~~~~~l~l~li~iG~G 115 (493)
T PRK15462 37 TNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEI-HPSFLYLSLAIIVCGYG 115 (493)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHhcc
Confidence 456899999999999999999999999999999999 9999999999999999887765431 11224444455556677
Q ss_pred cchhHHHHHHHhccCCC--cchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHH
Q psy4738 650 TTFPAANQLLAAWIPKT--ERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAV 711 (1188)
Q Consensus 650 ~~~p~~~~~i~~~~~~~--~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~ 711 (1188)
...|...++++|.||++ +|.+..++.+....+|..++|.+.+++.+..| ||+.|.+.++.
T Consensus 116 ~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G--w~~~F~iaaig 177 (493)
T PRK15462 116 LFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS--WAMGFGLAAVG 177 (493)
T ss_pred cccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC--hHHHHHHHHHH
Confidence 77788889999999875 79999999999999999999999999998888 99999987653
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-11 Score=146.92 Aligned_cols=346 Identities=12% Similarity=0.039 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHH
Q psy4738 249 GHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGV 328 (1188)
Q Consensus 249 ~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l 328 (1188)
..+........+++.|+.++.|+++...|.+..+.-+.-.+.-++.|+++||...|.- + ||....++.+..++.+
T Consensus 20 ~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~G----r-~rp~il~g~i~~~i~~ 94 (460)
T PRK11462 20 ASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWG----K-FRPWVLFGALPFGIVC 94 (460)
T ss_pred hhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCC----C-cchhHhHHHHHHHHHH
Confidence 3455566677899999999999999999999999999999999999999998765421 1 4445555555444444
Q ss_pred HHHHhhcc---hH-H-HHHHHHHHHHHHHhhhhhHHHHhhcccC--chhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCC
Q psy4738 329 ILASYAGC---DQ-I-LVVTLFTVGMAFMGFFYPSLKVNALDLS--PNYAGTLMAIVNGIGAISGIISPYLIGILVPNNG 401 (1188)
Q Consensus 329 ~~~~~~~~---~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G 401 (1188)
.++...+. .. . ...+...+...........+.+...++. +++|++.++.....+++|+.+++.+...+.+..|
T Consensus 95 ~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g 174 (460)
T PRK11462 95 VLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIG 174 (460)
T ss_pred HHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44433321 11 1 1222222223333333344445555554 4789999999999999999888888777665554
Q ss_pred cc-----chHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhHhhhhhccccchhhhHhhhccCCchHHHHHHHHHHHhhh
Q psy4738 402 VL-----SSLPFLLMWLTAIVAGWFSDYLVSKNIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFM 476 (1188)
Q Consensus 402 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 476 (1188)
.. +.....+.+++.+++..+.....+++.++.++..+... .+-...
T Consensus 175 ~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~~~~~~~-----------~l~~~~------------------ 225 (460)
T PRK11462 175 GDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPTTTSMRE-----------DLRDIW------------------ 225 (460)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCccCCCHHH-----------HHHHHh------------------
Confidence 21 11122233333333333332222222111110000000 000000
Q ss_pred cccccccceecccCCCcchhHHHHHHhhhhhccccccceeeeeeccCcccchhHHHHHHHHHHHH-----Hhhhhheeec
Q psy4738 477 GFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNSTMLEWRLVFWISFGVIM-----ITNVAYVFMG 551 (1188)
Q Consensus 477 g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~igp~i~~~l~~~~t~~~wr~vf~i~a~i~l-----~~~l~~l~~~ 551 (1188)
+...|+..........+ .+...|.
T Consensus 226 ------------------------------------------------~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~--- 254 (460)
T PRK11462 226 ------------------------------------------------QNDQWRIVGLLTIFNILAVCVRGGAMMYY--- 254 (460)
T ss_pred ------------------------------------------------CChHHHHHHHHHHHHHHHHHHHHhHhhhh---
Confidence 11223322111101001 0111111
Q ss_pred cccccccCCCCCCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcc
Q psy4738 552 SGKIQSWNEPRHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAY 631 (1188)
Q Consensus 552 ~~~~q~w~~~~~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~ 631 (1188)
. +.-++ +++..+++.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.++
T Consensus 255 -------~-----------~y~~g-~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~ 315 (460)
T PRK11462 255 -------V-----------TWILG-TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPM 315 (460)
T ss_pred -------h-----------hhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhch
Confidence 0 00111 2234556778888999999999999999999999887655555554444333333
Q ss_pred cchhHHHHHHHHHHhhcccchhHHHHHHHhccC-------CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy4738 632 MGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIP-------KTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTN 698 (1188)
Q Consensus 632 ~~~~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~-------~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g 698 (1188)
.+.+.+++.=++.|++.+...+...+++.|..+ +++.|...+.+....-+|..+|+.++|.+.+..|
T Consensus 316 ~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G 389 (460)
T PRK11462 316 QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG 389 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 233334555577788887777777778887765 3445666788778889999999999998876543
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-11 Score=145.46 Aligned_cols=150 Identities=19% Similarity=0.284 Sum_probs=119.7
Q ss_pred cccC-cchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHH----HHHHHHHh
Q psy4738 572 YEFD-WDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLI----VWRFFEGL 646 (1188)
Q Consensus 572 ~~~~-~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~----~~R~l~Gi 646 (1188)
+|.| .+.+..+.+.+.-.++........+++..|+|.|+++.++.+.+.+=..+.+...+ +.+... ....++|+
T Consensus 235 ~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~-~~~~~~~~~~l~q~lhG~ 313 (400)
T PF03825_consen 235 QELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD-PWPFIVALQLLGQLLHGL 313 (400)
T ss_pred HHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHhhhhH
Confidence 4455 55666777777778889999999999999999999999999999999988888721 222233 33567999
Q ss_pred hcccchhHHHHHHHhccCCCcchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCC----CchHHHHHHHHHHHHHHHHHHh
Q psy4738 647 GEGTTFPAANQLLAAWIPKTERGKVGAFVWAG-IIMGTVISSSLTGLLLKLTNN----YWPVVFYLFGAVAILWFVVWLF 721 (1188)
Q Consensus 647 g~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~-~~~G~~~g~~l~g~l~~~~g~----gWr~~F~i~~~~~~~~~~~~~~ 721 (1188)
.-|...+++..++.+..|++.|+++++++++. .++|.++|..++|++.+..|. .|...|.+.+.+.++..++...
T Consensus 314 tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~ 393 (400)
T PF03825_consen 314 TFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI 393 (400)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999875 689999999999999997662 1556666666666665544444
Q ss_pred h
Q psy4738 722 I 722 (1188)
Q Consensus 722 ~ 722 (1188)
+
T Consensus 394 ~ 394 (400)
T PF03825_consen 394 L 394 (400)
T ss_pred h
Confidence 3
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.7e-14 Score=148.58 Aligned_cols=327 Identities=14% Similarity=0.126 Sum_probs=203.0
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcc-cCchHHHHHHHHHHHHHHHHHH---HhhhccHHHHHHHHHHHHhh
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQK-FGGKHTLGFGILSTAIFTLLTP---FAARQSANWLIALRFFEGLG 142 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr-~Grk~vl~~~lll~~v~sll~a---~a~~~s~~~lli~R~l~Glg 142 (1188)
.|.+++.++..++-|.|.|-..+-..++|++.|| ||-|..-.+-+...-++-+..+ .. +.+|.+++.|++-|+|
T Consensus 72 ~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~--~aFw~M~~GRF~FGIG 149 (459)
T KOG4686|consen 72 LDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGIS--HAFWTMLAGRFLFGIG 149 (459)
T ss_pred cccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHH--HHHHHHHhhheeeccC
Confidence 6778888899999999999999999999999996 5655533222222223333332 34 7899999999999999
Q ss_pred hccchhHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccC--CC-C-Ch---hHHHHHHHHHHH---HH
Q psy4738 143 EGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTD--GD-W-PE---IFYLFGILGVLW---FV 212 (1188)
Q Consensus 143 ~g~~~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~--~g-W-r~---~F~i~g~i~li~---~i 212 (1188)
.-..-.+..+++..||..||.+.++|+..+..-+|+..-..+-+++.++-+ ++ = +. +....+...+.. +.
T Consensus 150 gESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slica 229 (459)
T KOG4686|consen 150 GESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICA 229 (459)
T ss_pred chhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888999999999999999999999888998877777777766510 10 0 00 011111111111 11
Q ss_pred HHhhhcccCCCC--CCC---CCHh----HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy4738 213 AWCFLCYNDPAS--HPY---ISQR----EKEYLADTIGCLARNKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLP 283 (1188)
Q Consensus 213 l~~~~~~~~p~~--~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~ 283 (1188)
+..-+.+|..|+ |+. ..++ +.+.....+.......++.....+-+....|.++++.+|+|+..++.+.+..
T Consensus 230 l~lg~~D~rAerilh~e~g~~Ge~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~v 309 (459)
T KOG4686|consen 230 LSLGLSDDRAERILHLEEGFLGEEPKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTV 309 (459)
T ss_pred HHhhhhhhHHHHHHhhhcCcccCCcccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhh
Confidence 111122221111 000 0000 0000000011111123334445566777789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhh
Q psy4738 284 FLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNA 363 (1188)
Q Consensus 284 ~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (1188)
.....+.++..|.++||.|++-++. ..+.+....+-..+.+.-.+++.. +..++........+......
T Consensus 310 y~Isav~spvfg~i~Dk~G~n~~wv---------~~a~~~tl~~H~~l~Ft~lsPy~~--m~~lGLsysllAcslWP~va 378 (459)
T KOG4686|consen 310 YGISAVLSPVFGAISDKYGFNLWWV---------ASACILTLLGHSGLFFTFLSPYTS--MTFLGLSYSLLACSLWPCVA 378 (459)
T ss_pred hhhhhhhhhhHHHhHhhhcceehhH---------HHHHHHHHHHhhhHHhhhccHHHH--HHHHhhhHHHHHHHHhhhhh
Confidence 9999999999999999999864311 111111111111111111122222 22222222222222333344
Q ss_pred cccCchhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCccchH
Q psy4738 364 LDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLSSL 406 (1188)
Q Consensus 364 ~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~~~ 406 (1188)
..++.+.-|++.|..+.++++|-++.|.+.|.+.|.-|.+..+
T Consensus 379 ~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~l 421 (459)
T KOG4686|consen 379 SLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNL 421 (459)
T ss_pred hhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhH
Confidence 4455578999999999999999999999999999998864433
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.4e-11 Score=144.00 Aligned_cols=404 Identities=14% Similarity=0.039 Sum_probs=247.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccCccchhHHHHHHHHHHH
Q psy4738 246 NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDY----LVSKDIFSVTVIRKIFTTIAS 321 (1188)
Q Consensus 246 ~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr----~~~r~~l~~~~~r~~~~~i~~ 321 (1188)
..+..+.++.....+++.|+++ +|.+....+.+.....+...+..++.|+++|| +|| ||.+...+.
T Consensus 12 ~~~Giq~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GR---------Rrp~il~g~ 81 (477)
T TIGR01301 12 VAAGVQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGR---------RRPFIAAGA 81 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCC---------hHHHHHHHH
Confidence 3455566677777888888865 99999999999999999999999999999995 776 444555555
Q ss_pred HHHHHHHHHHHhhcch------------H----HHHHHHHHHHHHHHhhhhhHHHHhhcccCc-hh--hHHHHHHHHHHH
Q psy4738 322 VGPASGVILASYAGCD------------Q----ILVVTLFTVGMAFMGFFYPSLKVNALDLSP-NY--AGTLMAIVNGIG 382 (1188)
Q Consensus 322 ~~~~~~l~~~~~~~~~------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~--~g~~~g~~~~~~ 382 (1188)
......++.+.+..+. . ...+..+.+.-+......+...+...|..| ++ ++.+.+..+...
T Consensus 82 ~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~ 161 (477)
T TIGR01301 82 ALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFM 161 (477)
T ss_pred HHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHH
Confidence 5555555555443221 0 122222333334444455566777888776 33 368999999999
Q ss_pred hhhhhhhhHHHHhh--ccCCC-----------ccchHHHHHHHHHHHHHHHHHhhhhhcccchh-hhh-hHhhhhhcccc
Q psy4738 383 AISGIISPYLIGIL--VPNNG-----------VLSSLPFLLMWLTAIVAGWFSDYLVSKNIFSV-TVI-RKIFTTIASVG 447 (1188)
Q Consensus 383 ~lgg~i~p~l~g~l--~~~~G-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~k~~~~~~~~~ 447 (1188)
++|+.+++.+.+.. .+..+ ......|.+.+++.+++.++.....+++.... ++. ++..
T Consensus 162 ~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~------- 234 (477)
T TIGR01301 162 AIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEA------- 234 (477)
T ss_pred HHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhc-------
Confidence 99999999998875 22211 12344566666666666666555544432211 100 0000
Q ss_pred chhhhHhhhccCCchHHHHHHHHHHHhhhcccccccceecccCCCcchhHHHHHHhhhhhccccccceeeeeeccCcccc
Q psy4738 448 PASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNSTML 527 (1188)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~igp~i~~~l~~~~t~~ 527 (1188)
+-.++. .....+.+..+. + . +-+.
T Consensus 235 -----------------------------------------~~~~~~-~~~~~~~~i~~~------------~-~-~mP~ 258 (477)
T TIGR01301 235 -----------------------------------------APPSKH-GEEAFFGELFGA------------F-K-YLPR 258 (477)
T ss_pred -----------------------------------------cccccc-chhhhHHHHHHH------------H-H-HCCH
Confidence 000000 000000000000 0 0 1123
Q ss_pred hhHHHHHHHHHHHHHhhhhheeeccccccccCCCCCCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhC
Q psy4738 528 EWRLVFWISFGVIMITNVAYVFMGSGKIQSWNEPRHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFG 607 (1188)
Q Consensus 528 ~wr~vf~i~a~i~l~~~l~~l~~~~~~~q~w~~~~~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~G 607 (1188)
+.|.+..+-..-.+ +...++.+.+.-. .++.... .++..+.++-....-.|....+.+...+..+..-++.+|+|
T Consensus 259 ~m~~l~~vqffsW~-a~f~~~~y~T~~v---g~~v~~~-~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g 333 (477)
T TIGR01301 259 PVWILLLVTCLNWI-AWFPFILFDTDWM---GREVYGG-SVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWG 333 (477)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhccHHH---HHHHcCC-CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333222221111 1111221111110 0000000 01111222111112345555666666677778888999999
Q ss_pred C-hhHHHHHHHHHHHHHHHhhhhcccc-------------------hhHHHHHHHHHHhhcccchhHHHHHHHhccCC--
Q psy4738 608 G-KHTLGFGILSTAIFTILTPMAAYMG-------------------PVWLIVWRFFEGLGEGTTFPAANQLLAAWIPK-- 665 (1188)
Q Consensus 608 r-r~~l~~~~~~~~i~~ll~a~a~~~~-------------------~~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~~-- 665 (1188)
+ |++...+.++.+++.+...+.++.+ .+..++.=.+.|+.-+..+....+++++..|+
T Consensus 334 ~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~ 413 (477)
T TIGR01301 334 AGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLG 413 (477)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccC
Confidence 5 7777999888888877776544210 25678888999999999999999999999985
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4738 666 TERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSEP 727 (1188)
Q Consensus 666 ~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~~~p 727 (1188)
++.|..+|+++....+.+++..+..|.+.+..|++=.+.+.+.++..++..+...+.+|+.|
T Consensus 414 ~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 414 AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 55699999999999999999999888888777766788999999999999998888887654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-10 Score=139.51 Aligned_cols=326 Identities=14% Similarity=0.049 Sum_probs=196.9
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcc----cCchHH-HHHHHHHHHHHHHHHHHhhhcc----HHHHHHHHH
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQK----FGGKHT-LGFGILSTAIFTLLTPFAARQS----ANWLIALRF 137 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr----~Grk~v-l~~~lll~~v~sll~a~a~~~s----~~~lli~R~ 137 (1188)
+.+|+++...|.+..+--+--++..|+.|.++|| +||||. ++++.+..+++..++-..+..+ ...+.+.=.
T Consensus 38 ~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~ 117 (460)
T PRK11462 38 DIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYT 117 (460)
T ss_pred HhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 4679999999999999999999999999999995 797655 5567677777766654442112 344555656
Q ss_pred HHHhhhccchhHHHHHHhhccC-CCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccC-----CCCChhHHHHHHHHHHHH
Q psy4738 138 FEGLGEGTTFPALNTLLAQWVP-PTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTD-----GDWPEIFYLFGILGVLWF 211 (1188)
Q Consensus 138 l~Glg~g~~~p~~~~li~~~~p-~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~-----~gWr~~F~i~g~i~li~~ 211 (1188)
+-.++.......-.++..+..+ ++||++..++-..+..+|..+++.+...+.+..+ .||+....+.++++++..
T Consensus 118 ~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~ 197 (460)
T PRK11462 118 LLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMML 197 (460)
T ss_pred HHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 6677777777777788888887 7999999999999999888877776655544311 368887777777776666
Q ss_pred HHHhhhcccCCCCCCCCCHhHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy4738 212 VAWCFLCYNDPASHPYISQREKEYLADTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLL 286 (1188)
Q Consensus 212 il~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~ 286 (1188)
.+.++..+|.+++++. +..-++.++...+++.. ..+...............|.+..++.+ ...+.+.....+.
T Consensus 198 ~i~~~~~kE~~~~~~~-~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~-~~~~~~l~~~~i~ 275 (460)
T PRK11462 198 AFCFFTTKERVEAPPT-TTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTP-EVFVAFLTTYCVG 275 (460)
T ss_pred HHHHhcceeccCCCcc-CCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCCh-HHHHHHHHHHHHH
Confidence 5555555554332211 11112222222222211 112222222333334444445555543 3345566677788
Q ss_pred HHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhccc
Q psy4738 287 MWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDL 366 (1188)
Q Consensus 287 ~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (1188)
.+++.++.++++||+++|+. ............++.......+.....+...+...+.+...+.......|.
T Consensus 276 ~iig~~l~~~l~~r~gkk~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~ 346 (460)
T PRK11462 276 NLIGSALAKPLTDWKCKVTI---------FWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDT 346 (460)
T ss_pred HHHHHHHHHHHHHHhChHHH---------HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999987532 111111111111111111122222222222222223333334334444443
Q ss_pred Cc--------hhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCcc
Q psy4738 367 SP--------NYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVL 403 (1188)
Q Consensus 367 ~p--------~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~ 403 (1188)
.. +..|...+..++...+|.++++.+.|.+++..|+.
T Consensus 347 ~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy~ 391 (460)
T PRK11462 347 VDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGYD 391 (460)
T ss_pred HhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 32 23466678888999999999999999999877663
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-12 Score=154.74 Aligned_cols=351 Identities=18% Similarity=0.170 Sum_probs=230.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhccCccchhHHHHHHHHHHHHH
Q psy4738 248 IGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSD----YLVSKDIFSVTVIRKIFTTIASVG 323 (1188)
Q Consensus 248 ~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsd----r~~~r~~l~~~~~r~~~~~i~~~~ 323 (1188)
+..+........+++.|+.+..|+++...|.+....-+...+..++.|.++| |+|| ||....++...
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Gr---------rrp~~l~g~i~ 81 (428)
T PF13347_consen 11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGR---------RRPWILIGAIL 81 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccc---------cceEeehhhHH
Confidence 3445556667779999999999999999999999999999999999999999 5565 44455566666
Q ss_pred HHHHHHHHHhh-c--chH----HHHHHHHHHHHHHHhhhhhHHHHhhcccCc--hhhHHHHHHHHHHHhhhhhhhhHHHH
Q psy4738 324 PASGVILASYA-G--CDQ----ILVVTLFTVGMAFMGFFYPSLKVNALDLSP--NYAGTLMAIVNGIGAISGIISPYLIG 394 (1188)
Q Consensus 324 ~~~~l~~~~~~-~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~g~~~g~~~~~~~lgg~i~p~l~g 394 (1188)
.+++++.+... + .+. ....+...+...+.......+.+...|+.+ ++|....+..+....+|+.+...+.+
T Consensus 82 ~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~ 161 (428)
T PF13347_consen 82 LALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAP 161 (428)
T ss_pred HHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 66665555544 2 111 111222222233344444455666667665 67999999999999999988888888
Q ss_pred hhccCCCcc-----chHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhHhhhhhccccchhhhHhhhccCCchHHHHHHH
Q psy4738 395 ILVPNNGVL-----SSLPFLLMWLTAIVAGWFSDYLVSKNIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLF 469 (1188)
Q Consensus 395 ~l~~~~G~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 469 (1188)
.+.+..|.. +.....+.+++.++..++.....|++.++.++.++.......
T Consensus 162 ~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~~~~------------------------ 217 (428)
T PF13347_consen 162 ILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKISLRDS------------------------ 217 (428)
T ss_pred hhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccccccccc------------------------
Confidence 888776643 233334444444444444444444411111111110000000
Q ss_pred HHHHhhhcccccccceecccCCCcchhHHHHHHhhhhhccccccceeeeeeccCcccchhHHHHHHHHHHHHHhhhhhee
Q psy4738 470 TVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNSTMLEWRLVFWISFGVIMITNVAYVF 549 (1188)
Q Consensus 470 ~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~igp~i~~~l~~~~t~~~wr~vf~i~a~i~l~~~l~~l~ 549 (1188)
+.+-.+.++++..+.......+...+...
T Consensus 218 --------------------------------------------------~~~~~~nr~~~~l~~~~~~~~~~~~~~~~- 246 (428)
T PF13347_consen 218 --------------------------------------------------LRSLFRNRPFRILLLAFFLQWLAFALMNT- 246 (428)
T ss_pred --------------------------------------------------hhhhcccchHHHHHHHHHHHHhhhhhhhh-
Confidence 00001112233222211111111110000
Q ss_pred eccccccccCCCCCCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhh
Q psy4738 550 MGSGKIQSWNEPRHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMA 629 (1188)
Q Consensus 550 ~~~~~~q~w~~~~~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a 629 (1188)
...--.+..++.+ +..++....+.++..++.+++++++||+|+|+.+..+.++.+++.++..+.
T Consensus 247 ---------------~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~ 310 (428)
T PF13347_consen 247 ---------------FLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFL 310 (428)
T ss_pred ---------------HHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHH
Confidence 0001112223323 567788889999999999999999999999999999999999999988887
Q ss_pred cccchhHHHHHHHHHHhhcccchhHHHHHHHhccC-------CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy4738 630 AYMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIP-------KTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTN 698 (1188)
Q Consensus 630 ~~~~~~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~-------~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g 698 (1188)
+..+.+.+++.-++.|++.+..++...++++|..+ +++.|...|+++...-+|..+++.+.+.+.+..|
T Consensus 311 ~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 311 GPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred HhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 63356779999999999999999999999999986 3456899999999999999999999998876544
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.4e-11 Score=137.43 Aligned_cols=347 Identities=17% Similarity=0.156 Sum_probs=203.2
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHH--HHHHH----HHHhhhccHH-HHHHHHHHH
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTA--IFTLL----TPFAARQSAN-WLIALRFFE 139 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~--v~sll----~a~a~~~s~~-~lli~R~l~ 139 (1188)
++-|.|.+|.|.+.++..+...+.||+.|.++||.|.||-++..+.+.. .+... .|+- +.|.+ ..++.-...
T Consensus 36 ~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll-~~n~~lg~iig~i~l 114 (412)
T PF01306_consen 36 QVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLL-QSNFWLGAIIGGIYL 114 (412)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHH-HTT-HHHHHHTTTTT
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3478999999999999999999999999999999996665544332221 12211 1221 12222 223333333
Q ss_pred HhhhccchhHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcc
Q psy4738 140 GLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCY 219 (1188)
Q Consensus 140 Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~ 219 (1188)
|+......|..-+++.++. ++.+.=.|-.-+..++|.+++..++|.+.+. +=+..||+....+++..++.++..+
T Consensus 115 ~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i---~p~~~fwi~s~~~~il~lll~~~~~ 189 (412)
T PF01306_consen 115 GLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI---NPNIIFWIASAAAIILLLLLLLLKP 189 (412)
T ss_dssp TTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHSS--
T ss_pred HHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee---CccHHHHHHHHHHHHHHHHHHHcCC
Confidence 4444555566666666654 3444555666677788999999999999876 3468899877777766666666655
Q ss_pred cCCCCCCCCC----HhHHHHHH---HHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHH
Q psy4738 220 NDPASHPYIS----QREKEYLA---DTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMK---FSIAKNGVLSSLPF 284 (1188)
Q Consensus 220 ~~p~~~~~~~----~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g---~s~~~~g~l~~~~~ 284 (1188)
+.+++.+..+ ++++...+ +.++.+.. ........+..+-...|.|+++..+ .+....|.+.+.-.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v 269 (412)
T PF01306_consen 190 DVPPQAEVADALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQV 269 (412)
T ss_dssp -SSSSS-SSTTSSS------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred cCchhhhhhcccccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHH
Confidence 5444322111 11111111 22222111 1111222344444567888876432 34556788888888
Q ss_pred HHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhh-hhHHHHhh
Q psy4738 285 LLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFF-YPSLKVNA 363 (1188)
Q Consensus 285 l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 363 (1188)
+..++......++.+|+|.|+. ..++..+..+=.......++ ++.....=.+-....... .+...-..
T Consensus 270 ~~E~~~m~~~p~li~rig~k~~----------Lllag~i~~iRi~~~~~~~~-~~~i~~~klLH~~e~~l~lva~fkYI~ 338 (412)
T PF01306_consen 270 FLEALMMFFSPWLINRIGAKNL----------LLLAGVIMAIRIIGSGFATN-PWVISLIKLLHALEFPLLLVAAFKYIT 338 (412)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHH----------HHHHHHHHHHHHHHHHT--S-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcChHhH----------HHHHHHHHHHHHHHHhhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997542 33333333333444444433 334444444444444443 33334444
Q ss_pred cccCchhhHHHHHH-HHHHHhhhhhhhhHHHHhhccCCCccchHHHHHHHHHHHHHHHHHhhhhhcccch
Q psy4738 364 LDLSPNYAGTLMAI-VNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSDYLVSKNIFS 432 (1188)
Q Consensus 364 ~~~~p~~~g~~~g~-~~~~~~lgg~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (1188)
...+++..++...+ .+...+++.++.+.+.|.+.|+.|. ..++++++.+++...++.....++++++
T Consensus 339 ~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~--~~tylimg~iv~~~~li~~f~l~~~~~~ 406 (412)
T PF01306_consen 339 AHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGF--QHTYLIMGLIVLPFTLISAFTLKKDKKQ 406 (412)
T ss_dssp HHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred HhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCc--HHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence 45556788888888 4788899999999999999999984 3456677777777777766665555543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.2e-11 Score=133.83 Aligned_cols=321 Identities=15% Similarity=0.111 Sum_probs=219.3
Q ss_pred ChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHH-HHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHhhhccchhH
Q psy4738 72 DEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLG-FGILSTAIFTLLTPFAAR-QSANWLIALRFFEGLGEGTTFPA 149 (1188)
Q Consensus 72 s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~-~~lll~~v~sll~a~a~~-~s~~~lli~R~l~Glg~g~~~p~ 149 (1188)
+.+-.+...++..+-.++..|+-|.++|+.|+||..+ ....+-.+++.+..+++. .+++..+++-.+..++.......
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 4456688888999999999999999999999766655 444555555666666643 24556677778888888888899
Q ss_pred HHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHH--HHhhh-c-------------cCCCCChhHHHHHHHHHHHHHH
Q psy4738 150 LNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLS--GFLLK-Y-------------TDGDWPEIFYLFGILGVLWFVA 213 (1188)
Q Consensus 150 ~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lg--g~l~~-~-------------~~~gWr~~F~i~g~i~li~~il 213 (1188)
-.+++.|..++++-++..+.-.....+|+.+.-... +.+.. . ++..=|..+.+.++--+++.+-
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 999999999999999998887776777776655443 11111 1 1134566677777666666666
Q ss_pred HhhhcccCCCCC-CCCC--HhHHHHHHHHHhhhhh---------hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Q psy4738 214 WCFLCYNDPASH-PYIS--QREKEYLADTIGCLAR---------NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSS 281 (1188)
Q Consensus 214 ~~~~~~~~p~~~-~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~ 281 (1188)
.++..+|.++.. +..+ .+.-++..+++++..+ +.+..+=+..++......|-...+|++..+..+...
T Consensus 216 m~~~v~~~~~~~~~~~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~ 295 (438)
T COG2270 216 MILNVHDAEKISSPPPTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGI 295 (438)
T ss_pred HHhcccccccccccchHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence 677777766432 2111 1111222222222211 555555577888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHH
Q psy4738 282 LPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKV 361 (1188)
Q Consensus 282 ~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (1188)
...+..++++++.|++.||++.|+.+. ++.+...+..+...+...+....+..+.++.+..+.+...-..
T Consensus 296 ~~~vvA~lg~ii~g~Ld~rfg~k~vl~----------~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy 365 (438)
T COG2270 296 ALSVVAALGAIIAGFLDERFGSKPVLM----------IGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSY 365 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCceeeh----------HHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHH
Confidence 999999999999999999999875422 2222222222222222222333333344444444444444455
Q ss_pred hhcccCchhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCc
Q psy4738 362 NALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNNGV 402 (1188)
Q Consensus 362 ~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~ 402 (1188)
.....+|++.+.-.|+++..++..+..+|.+.+.+.+.+|.
T Consensus 366 ~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~ 406 (438)
T COG2270 366 LARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS 406 (438)
T ss_pred HHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 55566778999999999999999999999999999999986
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-10 Score=134.36 Aligned_cols=147 Identities=22% Similarity=0.292 Sum_probs=125.3
Q ss_pred cccCChhhHHHHHHHHHHHHHHhHhhHHHhhccc-CchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccc
Q psy4738 68 EFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKF-GGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTT 146 (1188)
Q Consensus 68 ~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~-Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~ 146 (1188)
.+|.|+++..-+.++|.--.=++.+++|+++||+ |+|+.+..+.++.+++-++.+.....+...+.+.-++.++|.|..
T Consensus 55 gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~ 134 (498)
T COG3104 55 GLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLF 134 (498)
T ss_pred cCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccc
Confidence 3789999999999999776677889999999997 999999999999999999888761126788999999999999999
Q ss_pred hhHHHHHHhhccCCCc--hhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhh
Q psy4738 147 FPALNTLLAQWVPPTE--RGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL 217 (1188)
Q Consensus 147 ~p~~~~li~~~~p~~~--Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~ 217 (1188)
=|....+++|.+|+++ |-...++++++.++|+.++|.+.+++.+. .||++.|-..++-..+ .++++.+
T Consensus 135 K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~--~g~~~gF~~aavGm~~-gl~~f~~ 204 (498)
T COG3104 135 KPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAIN--YGWHVGFGLAAVGMII-GLVIFLL 204 (498)
T ss_pred cccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHH-HHHHHHH
Confidence 9999999999999754 67788889999999999999999999999 9999999877654433 3333333
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.9e-12 Score=143.68 Aligned_cols=164 Identities=15% Similarity=0.182 Sum_probs=129.4
Q ss_pred ccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhccc----chh--HHHHHHH
Q psy4738 569 SQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYM----GPV--WLIVWRF 642 (1188)
Q Consensus 569 ~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~----~~~--~l~~~R~ 642 (1188)
..+..++ +.+..-|..-+|++.+....++.-|+.||+|-|...+++..+-+++..+=..+..- ..+ ....+..
T Consensus 70 ~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~ 148 (480)
T KOG2563|consen 70 YVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQS 148 (480)
T ss_pred HHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHH
Confidence 3445566 77778899999999999999999999999999999999999999999986554311 233 5678889
Q ss_pred HHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcC----CCCchH--HHHHHHHHHHHHH
Q psy4738 643 FEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLT----NNYWPV--VFYLFGAVAILWF 716 (1188)
Q Consensus 643 l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~----g~gWr~--~F~i~~~~~~~~~ 716 (1188)
+.+.++-........+-.-|||++||..+-.+-..+..+|.++|.++...+..+. +..|-. .|+....++.+.+
T Consensus 149 iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l 228 (480)
T KOG2563|consen 149 IAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLL 228 (480)
T ss_pred HHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 9999888888888899999999999999999988888999999999998887654 334765 3565555555555
Q ss_pred HHHHhhccCCCCCCccc
Q psy4738 717 VVWLFIGYSEPGSNPFI 733 (1188)
Q Consensus 717 ~~~~~~~~~~pe~~~~~ 733 (1188)
++..+..+++|..|+..
T Consensus 229 ~l~~~~~~~~P~tPps~ 245 (480)
T KOG2563|consen 229 ALVLFVFTKKPPTPPSA 245 (480)
T ss_pred HHHHHhcCCCCCCCCch
Confidence 56666666666666543
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.6e-12 Score=145.17 Aligned_cols=89 Identities=17% Similarity=0.101 Sum_probs=75.1
Q ss_pred chhHHHHHHHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC--------------
Q psy4738 633 GPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTN-------------- 698 (1188)
Q Consensus 633 ~~~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g-------------- 698 (1188)
+++.+++.=++.|.|.+...++++.++++..|+|++.+++++.++.+++|..+||++++.+.....
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~ 88 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEA 88 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHH
Confidence 556699999999999999999999999999999999999999999999999999999998874210
Q ss_pred CCchHHHHHHHHHHHHHHHHHHh
Q psy4738 699 NYWPVVFYLFGAVAILWFVVWLF 721 (1188)
Q Consensus 699 ~gWr~~F~i~~~~~~~~~~~~~~ 721 (1188)
..||++|++.+.+.++..+.+.+
T Consensus 89 ~~~~~~yl~ia~~~~~~~i~~~~ 111 (310)
T TIGR01272 89 AKVHTPYLLLAGALAVLAIIFAF 111 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 13999999777766555544433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.8e-13 Score=130.84 Aligned_cols=137 Identities=28% Similarity=0.491 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhcc
Q psy4738 79 ILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWV 158 (1188)
Q Consensus 79 l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~ 158 (1188)
..+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+. ++++.+.+.+++.|++.+...+....++.|.+
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (141)
T TIGR00880 3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS--SNITVLIIARFLQGFGAAFALVAGAALIADIY 80 (141)
T ss_pred EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC
Confidence 3456778889999999999999999999999999999999988888 89999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcc
Q psy4738 159 PPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCY 219 (1188)
Q Consensus 159 p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~ 219 (1188)
|+++|++..++......+|..+++.+++.+.+. .|||+.|++.+.+.++..+..+++.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 81 PPEERGVALGLMSAGIALGPLLGPPLGGVLAQF--LGWRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred ChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc--cchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999988 89999999998888777766666554
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-10 Score=134.21 Aligned_cols=328 Identities=14% Similarity=0.111 Sum_probs=236.4
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcc----cCchH-HHHHHHHHHHHHHHHHHHhhh----ccHHHHHHHHH
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQK----FGGKH-TLGFGILSTAIFTLLTPFAAR----QSANWLIALRF 137 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr----~Grk~-vl~~~lll~~v~sll~a~a~~----~s~~~lli~R~ 137 (1188)
+.+|+++...|.++.+--+-=++.-|+.|.+.|| +||+| -++.+.+-+++.+.++=.+.. .+....++.=.
T Consensus 41 dv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~ 120 (467)
T COG2211 41 DVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYM 120 (467)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHH
Confidence 6789999999999999999999999999999995 78655 566777888888888877631 24556667778
Q ss_pred HHHhhhccchhHHHHHHhhccC-CCchhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CCCCChhHHHHHHHHHHHH
Q psy4738 138 FEGLGEGTTFPALNTLLAQWVP-PTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT-----DGDWPEIFYLFGILGVLWF 211 (1188)
Q Consensus 138 l~Glg~g~~~p~~~~li~~~~p-~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~-----~~gWr~~F~i~g~i~li~~ 211 (1188)
+.+++.......--++..+..+ ++||.+..++-+.+..+|..+...+-+.+.+.. ..||+..-.+.++++++..
T Consensus 121 l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~ 200 (467)
T COG2211 121 LLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILL 200 (467)
T ss_pred HHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHH
Confidence 8888888887777788888875 799999999999999888666555554444431 2488888888888888887
Q ss_pred HHHhhhcccCCCCCCCCCHhHHHHHHHHH----hhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy4738 212 VAWCFLCYNDPASHPYISQREKEYLADTI----GCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSL 282 (1188)
Q Consensus 212 il~~~~~~~~p~~~~~~~~~~~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~ 282 (1188)
+..++-.+|.+.+....++.++.+..+.+ +++.- ...+...+.....+....|.+.++|.+..........
T Consensus 201 l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~ 280 (467)
T COG2211 201 LFCFFNVKERVVETQPTKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLA 280 (467)
T ss_pred HHHHHHhhcccCccccCcccccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHH
Confidence 77777777765433222221222333222 22111 3333444455556667778888889888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhhhhHHHH
Q psy4738 283 PFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGC-DQILVVTLFTVGMAFMGFFYPSLKV 361 (1188)
Q Consensus 283 ~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (1188)
.....+++.+...++.+|+|+|+. ..++.+...+..+...+.+. +..+.++..++...+.+...+...+
T Consensus 281 ~~~~~l~~~~~~p~L~~~~gkk~~----------~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wa 350 (467)
T COG2211 281 SGAGLLIGLILWPRLVKKFGKKKL----------FLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWA 350 (467)
T ss_pred HHHHHHHHHHhHHHHHHHhchHHH----------HHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHH
Confidence 888888889999999999997543 33444444444444444443 3455555556666777777777777
Q ss_pred hhcccCc--------hhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCccc
Q psy4738 362 NALDLSP--------NYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLS 404 (1188)
Q Consensus 362 ~~~~~~p--------~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~ 404 (1188)
...|... +..|...+..++++=+|.+++..+.|++++..|+..
T Consensus 351 m~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv~ 401 (467)
T COG2211 351 MVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYVP 401 (467)
T ss_pred HhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 7776532 456899999999999999999999999999888744
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.2e-10 Score=129.93 Aligned_cols=354 Identities=16% Similarity=0.114 Sum_probs=225.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHH
Q psy4738 247 KIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPAS 326 (1188)
Q Consensus 247 ~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~ 326 (1188)
-+..+..+.....|+..|+.++.|+++..+|.++.+.=+.-++.-++.|.+.||..+|. ++ ||.....+.+..++
T Consensus 21 d~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~----Gr-fRP~lL~g~ip~~i 95 (467)
T COG2211 21 DFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRW----GR-FRPWLLWGAIPFAI 95 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeeccccccc----cc-ccHHHHHHhHHHHH
Confidence 34455667778899999999999999999999999999999999999999999876543 22 44555555554444
Q ss_pred HHHHHHhhcc-----hHHHHHHHHHHHHHHHhhhhhHHHHhhccc--CchhhHHHHHHHHHHHhhhhhhhhHHHHhhccC
Q psy4738 327 GVILASYAGC-----DQILVVTLFTVGMAFMGFFYPSLKVNALDL--SPNYAGTLMAIVNGIGAISGIISPYLIGILVPN 399 (1188)
Q Consensus 327 ~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~ 399 (1188)
...+....++ ....+.+...+...+.......+.+...++ .|++|.+..+.-..+..+|+.+...+.+++...
T Consensus 96 ~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~ 175 (467)
T COG2211 96 VAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKL 175 (467)
T ss_pred HHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444332 122222222222333333333333444443 458899999999999999999888888888877
Q ss_pred CCccc-hH----HHHHHHHHHHHHHHHHhhhhhcccc-hhhh----hhHhhhhhccccchhhhHhhhccCCchHHHHHHH
Q psy4738 400 NGVLS-SL----PFLLMWLTAIVAGWFSDYLVSKNIF-SVTV----IRKIFTTIASVGPASGVILASYAGCDQILVVTLF 469 (1188)
Q Consensus 400 ~G~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 469 (1188)
.|... .. ...+.++..++..++..+..+++.. ..+. +.+.... +.....+
T Consensus 176 ~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~-----------~~~~~~N--------- 235 (467)
T COG2211 176 FGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDS-----------FLLIFKN--------- 235 (467)
T ss_pred hCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHH-----------HHHHHcc---------
Confidence 66543 22 2223333333333344333333221 1111 1111000 0000111
Q ss_pred HHHHhhhcccccccceecccCCCcchhHHHHHHhhhhhccccccceeeeeeccCcccchhHHHHHHHHHHHHHhhhhhee
Q psy4738 470 TVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNSTMLEWRLVFWISFGVIMITNVAYVF 549 (1188)
Q Consensus 470 ~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~igp~i~~~l~~~~t~~~wr~vf~i~a~i~l~~~l~~l~ 549 (1188)
..|+. .+. ..++....+.+
T Consensus 236 ---------------------------------------------------------rp~~~--~l~--~~l~~~~~~~i 254 (467)
T COG2211 236 ---------------------------------------------------------RPLLL--LLL--MNLLLFIAFNI 254 (467)
T ss_pred ---------------------------------------------------------chHHH--HHH--HHHHHHHHHHH
Confidence 11211 111 11111111110
Q ss_pred eccccccccCCCCCCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhh
Q psy4738 550 MGSGKIQSWNEPRHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMA 629 (1188)
Q Consensus 550 ~~~~~~q~w~~~~~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a 629 (1188)
.+ ....--.+.-+|.++.+..+....+..+..++.+++.+|.+|+|+|+++..+.+++.++.++.-+.
T Consensus 255 ~~------------s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~ 322 (467)
T COG2211 255 RG------------SIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT 322 (467)
T ss_pred Hh------------hhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhh
Confidence 00 000011223345555666677778888888889999999999999999999999999999999888
Q ss_pred cccchhHHHHHHHHHHhhcccchhHHHHHHHhccC-------CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy4738 630 AYMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIP-------KTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTN 698 (1188)
Q Consensus 630 ~~~~~~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~-------~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g 698 (1188)
+..+.+..++..++.++|.+...+...++++|..+ .+.-|...+......=+|.+++..+.|++....|
T Consensus 323 ~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 323 PAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred cCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 75567779999999999999999999999988764 3556777888888888999999988888876554
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.4e-12 Score=128.02 Aligned_cols=135 Identities=27% Similarity=0.502 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhcccchhHHHHHHHhccC
Q psy4738 585 LGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIP 664 (1188)
Q Consensus 585 ~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~ 664 (1188)
.+.+.++..++.++.|++.||+|||+.+..+.....++.+....++ +.+.+.+.+++.|++.+...+....++.|.+|
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS--NITVLIIARFLQGFGAAFALVAGAALIADIYP 81 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence 4567788899999999999999999999999999999999888887 56779999999999999999999999999999
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhc
Q psy4738 665 KTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIG 723 (1188)
Q Consensus 665 ~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~ 723 (1188)
+++|++..++.+....+|..++|.+++.+.+..+ ||+.|++.+.+.++..+...++.
T Consensus 82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 138 (141)
T TIGR00880 82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG--WRAPFLFLAILALAAFILLAFLL 138 (141)
T ss_pred hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc--hHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999998877 99999999888877766666654
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.1e-10 Score=128.74 Aligned_cols=146 Identities=15% Similarity=0.178 Sum_probs=126.3
Q ss_pred ccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhccc
Q psy4738 571 QYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGT 650 (1188)
Q Consensus 571 ~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g~ 650 (1188)
++++|++..+...+.-.-.+..+++.++.|+|.||+|.|+++..+++++.+.++..-+.. ....+.++-.+.|...|+
T Consensus 280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~--~~~~f~i~gll~g~s~G~ 357 (438)
T COG2270 280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE--GELDFWILGLLVGTSLGG 357 (438)
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc--ccHHHHHHHHHHHHhcch
Confidence 358999999999999999999999999999999999999999999999999998777666 344578888999999999
Q ss_pred chhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHH
Q psy4738 651 TFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVW 719 (1188)
Q Consensus 651 ~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~ 719 (1188)
....+-++.++..|++|-++.+|+++...-.++.+||.+-+.+.+..|+ =|.-+....++-.+-.+..
T Consensus 358 ~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~-~r~g~~~i~vll~iGl~~L 425 (438)
T COG2270 358 AQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS-SRAGVLSIIVLLLIGLLLL 425 (438)
T ss_pred HHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHhhHhhE
Confidence 9999999999999999999999999999999999999999999987664 6666655444444433333
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-09 Score=121.22 Aligned_cols=319 Identities=17% Similarity=0.131 Sum_probs=203.5
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccC-----chHHHH-HHHHHHHHHHHHHHHhh----h-------cc-
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFG-----GKHTLG-FGILSTAIFTLLTPFAA----R-------QS- 128 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~G-----rk~vl~-~~lll~~v~sll~a~a~----~-------~s- 128 (1188)
.|+++.....+.+++...+. ....+.+|+.||+.+ ||.-++ .+.++...+..+.+++. . +.
T Consensus 8 vEL~vpA~lv~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~ 86 (403)
T PF03209_consen 8 VELGVPAWLVALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW 86 (403)
T ss_pred HHhccHHHHHHHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence 58899999999888888765 557999999999999 777655 45666666666666542 1 11
Q ss_pred HH--HHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHH---H
Q psy4738 129 AN--WLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYL---F 203 (1188)
Q Consensus 129 ~~--~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i---~ 203 (1188)
.+ ...+.-.+.|+|.+..-++..+++.|..|+|+|+++.++......+|.+++..+.|.+.+. ++=.-..-+ .
T Consensus 87 ~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~--~s~~rL~~v~~~~ 164 (403)
T PF03209_consen 87 LGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDP--FSPERLIQVIQGV 164 (403)
T ss_pred HHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccc--cCHHHHHHHHHHH
Confidence 12 3444566779999999999999999999999999999999999999999999999988876 443333322 2
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCC-CCHhHHHHH----HHHHhhhhhhHHHHHHHHHHHHH-----HHHHHHHHHhCCCH
Q psy4738 204 GILGVLWFVAWCFLCYNDPASHPY-ISQREKEYL----ADTIGCLARNKIGHDWGLFMISA-----DLPKYMKSVMKFSI 273 (1188)
Q Consensus 204 g~i~li~~il~~~~~~~~p~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-----~lp~yl~~~~g~s~ 273 (1188)
+.+.++..++..+- .|++.+++. ..++|+... .+...+.....|.......++.. .+-.|=-+++|+++
T Consensus 165 a~i~~~l~~ia~wg-~E~r~~~~~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv 243 (403)
T PF03209_consen 165 ALIALLLNLIALWG-QEPRRSRRAAAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSV 243 (403)
T ss_pred HHHHHHHHHHHHHh-cccCCcccccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCH
Confidence 33332222222222 222221111 112222222 22222222223332222222222 23345556799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHh---hcchHHHHHHHHHHHHH
Q psy4738 274 AKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASY---AGCDQILVVTLFTVGMA 350 (1188)
Q Consensus 274 ~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~ 350 (1188)
.+...+......+..++....|++..|..+|+ | ...+++.....++..+.. .++........+.++ .
T Consensus 244 ~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~-------~--~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G-~ 313 (403)
T PF03209_consen 244 GETTRLTAFWGGGTLLGMLLAGFLLSRRLGKK-------R--TAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLG-L 313 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch-------H--HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH-H
Confidence 99999999999999999999998877433221 2 223444444444333322 233333344444444 4
Q ss_pred HHhhhhhHHHHhhcccC-chhhHHHHHHHHHHHhhhhhhhhHHHHhhccC
Q psy4738 351 FMGFFYPSLKVNALDLS-PNYAGTLMAIVNGIGAISGIISPYLIGILVPN 399 (1188)
Q Consensus 351 ~~~~~~~~~~~~~~~~~-p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~ 399 (1188)
+.+...........++. +++.|..+|.-...+.+...++..++|.+.|.
T Consensus 314 g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 314 GNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred hhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555 68999999999999999999999999998874
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.29 E-value=4e-13 Score=163.75 Aligned_cols=252 Identities=17% Similarity=0.195 Sum_probs=3.0
Q ss_pred CCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhc----cc-------
Q psy4738 564 LLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAA----YM------- 632 (1188)
Q Consensus 564 ~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~----~~------- 632 (1188)
.....+++++|+++.++.|++.+.|-++..+..++..++++|..|-|++-.+.++.+++++++++-| .+
T Consensus 23 ~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~ 102 (539)
T PF03137_consen 23 NSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASN 102 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccc
Confidence 3456789999999999999999999999999999999999999999999999999999999876421 00
Q ss_pred -------------------------------------chhHHHHHHHHHHhhcccchhHHHHHHHhccCCCcchhHHHHH
Q psy4738 633 -------------------------------------GPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFV 675 (1188)
Q Consensus 633 -------------------------------------~~~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~ 675 (1188)
..+.+++++++.|+|.+..++...+|+-|..++++-+...|++
T Consensus 103 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~ 182 (539)
T PF03137_consen 103 SNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGIL 182 (539)
T ss_dssp -------------------------------------------------SSS----------------------------
T ss_pred cccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhh
Confidence 1356889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCC----------------C----CchHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCh
Q psy4738 676 WAGIIMGTVISSSLTGLLLKLTN----------------N----YWPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFISQ 735 (1188)
Q Consensus 676 ~~~~~~G~~~g~~l~g~l~~~~g----------------~----gWr~~F~i~~~~~~~~~~~~~~~~~~~pe~~~~~~~ 735 (1188)
.+...+|+++|.++|+.....+- . .|-.=|++.+.+.++..+..+.+.++-|++++..
T Consensus 183 ~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~-- 260 (539)
T PF03137_consen 183 YAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQ-- 260 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCccccc--
Confidence 99999999999999998875321 1 2555566666666666666666643334431111
Q ss_pred hhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeecCCCcccccccchhHHHH
Q psy4738 736 KEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTPWKEMATSWPVIAL 815 (1188)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1188)
++++..++.......+. ..+++ .........++ .+...+++++|+.+...
T Consensus 261 ~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~d-----------------------f~~~l~~Ll~Np~f~~~ 310 (539)
T PF03137_consen 261 EEKESSERKEEDSDKDS----FKDPK---SKKSFGKSIKD-----------------------FPKALKRLLTNPVFMCL 310 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhhhhcchhhhhhhc----ccccc---cccchhhhhhh-----------------------HHHHHHHHhcChHHHHH
Confidence 01110000000000000 00000 00000111222 12346789999999999
Q ss_pred HHHHhhchhhHHHHhhcchHHHHhhhhhcccc
Q psy4738 816 VITQVGHDWGLFTIAADLPKYFASVIHFSVHS 847 (1188)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~ 847 (1188)
.+..........++..++|+|+++.++.|+.+
T Consensus 311 ~la~~~~~~~~~G~~tF~pKylE~QF~~sas~ 342 (539)
T PF03137_consen 311 ILAGVFESFIVSGFATFLPKYLESQFGLSASQ 342 (539)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999763
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-10 Score=141.70 Aligned_cols=245 Identities=16% Similarity=0.234 Sum_probs=189.0
Q ss_pred CcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhccc------------
Q psy4738 565 LPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYM------------ 632 (1188)
Q Consensus 565 ~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~------------ 632 (1188)
.....+.+.|+++.++.|++.+.|=++..+...+..+.+-|.-|-|++-.++++.+++++++++-|=+
T Consensus 118 s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~ 197 (735)
T KOG3626|consen 118 SVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIK 197 (735)
T ss_pred hhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhh
Confidence 44577889999999999999999999999999999999999999999999999999999998865200
Q ss_pred -------------------------------------chh-HHHHHHHHHHhhcccchhHHHHHHHhccCCCcchhHHHH
Q psy4738 633 -------------------------------------GPV-WLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAF 674 (1188)
Q Consensus 633 -------------------------------------~~~-~l~~~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~ 674 (1188)
.+| .++++.++.|+|+...+|....|+-|...+++-...+|+
T Consensus 198 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi 277 (735)
T KOG3626|consen 198 QSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGI 277 (735)
T ss_pred ccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHH
Confidence 023 678889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCC-----------------CCchHHHHHHHHHHHHHHHHHHhhccCCCCCCcccChhh
Q psy4738 675 VWAGIIMGTVISSSLTGLLLKLTN-----------------NYWPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFISQKE 737 (1188)
Q Consensus 675 ~~~~~~~G~~~g~~l~g~l~~~~g-----------------~gWr~~F~i~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~ 737 (1188)
..+...+|+++|.++|+.....+. ..|..=|++.+.+.++..+..+++.++.|++.++...++
T Consensus 278 ~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~ 357 (735)
T KOG3626|consen 278 LYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRARD 357 (735)
T ss_pred HHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccccccchhhh
Confidence 999999999999999999986421 137777888888888888777777555555444311111
Q ss_pred hHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeecCCCcccccccchhHHHHHH
Q psy4738 738 MDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTPWKEMATSWPVIALVI 817 (1188)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1188)
.+... ++.+ ............++.. ...+++++|+.+...++
T Consensus 358 ~~~~k--------------~~~~-~~~~~~~~~~~ikdfp-----------------------~s~~~ll~N~if~~~~l 399 (735)
T KOG3626|consen 358 LHVLK--------------TESG-GAKSDKTFGKKIKDFP-----------------------KSIKRLLSNPIFMLVVL 399 (735)
T ss_pred hcccc--------------cccc-cccCCcchhhhHHHHH-----------------------HHHHHHhcCchHHHHHH
Confidence 11000 0000 0000000011222222 23567899999999999
Q ss_pred HHhhchhhHHHHhhcchHHHHhhhhhcccc
Q psy4738 818 TQVGHDWGLFTIAADLPKYFASVIHFSVHS 847 (1188)
Q Consensus 818 ~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~ 847 (1188)
..........++..++|+|+++.+|.|+..
T Consensus 400 ~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~ 429 (735)
T KOG3626|consen 400 ASVIESLAITGYITFLPKYLETQFGISASL 429 (735)
T ss_pred HHHHHHHHHhhHHHhhHHHHHHHcCCCHHH
Confidence 999999999999999999999999999864
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.6e-10 Score=132.59 Aligned_cols=351 Identities=17% Similarity=0.165 Sum_probs=211.6
Q ss_pred cccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccCc-hHHHHHHHHHHHHHHHHH-HHh--hhccHHHHHHHHHHHHhhh
Q psy4738 68 EFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGG-KHTLGFGILSTAIFTLLT-PFA--ARQSANWLIALRFFEGLGE 143 (1188)
Q Consensus 68 ~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Gr-k~vl~~~lll~~v~sll~-a~a--~~~s~~~lli~R~l~Glg~ 143 (1188)
|.+.+.+..|+++++..++.+++.+..|+.+.|.+. |+-++.+.++..+++++- +++ +....+.++++|++.|+|.
T Consensus 65 D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~ 144 (488)
T KOG2325|consen 65 DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV 144 (488)
T ss_pred CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc
Confidence 466778888999999999999999999999999996 888888899999999887 443 2225789999999999995
Q ss_pred ccchhHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCh-----------hHHHHHHHHHHHHH
Q psy4738 144 GTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPE-----------IFYLFGILGVLWFV 212 (1188)
Q Consensus 144 g~~~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~-----------~F~i~g~i~li~~i 212 (1188)
|. .....+++++-...++|.|+++....+..+|.++||.++..+..-...||++ +=|+..++.++.++
T Consensus 145 ~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v 223 (488)
T KOG2325|consen 145 GN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIV 223 (488)
T ss_pred cc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHH
Confidence 54 6888999999988999999999999988888888888887776543223332 34667777777777
Q ss_pred HHhhhcccCCCCCCCCC---H-hHHHHHH-HHHhhhhh--------hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH---
Q psy4738 213 AWCFLCYNDPASHPYIS---Q-REKEYLA-DTIGCLAR--------NKIGHDWGLFMISADLPKYMKSVMKFSIAKN--- 276 (1188)
Q Consensus 213 l~~~~~~~~p~~~~~~~---~-~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~--- 276 (1188)
...++.+|.+++....+ + +++...+ ....+... ..+..+.......+..+.+....++++..++
T Consensus 224 ~i~~~f~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~ 303 (488)
T KOG2325|consen 224 IILFFFKEVYRGIIDKKKRSVEEEKSDIEKVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLY 303 (488)
T ss_pred HHHhheeecccCccccccccchhhccchhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHh
Confidence 77777777655432221 1 1111111 11111111 2233333344444555555556666655443
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHH-HHHhh--c------------ch---
Q psy4738 277 -GVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVI-LASYA--G------------CD--- 337 (1188)
Q Consensus 277 -g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~-~~~~~--~------------~~--- 337 (1188)
|...+..++......+... .-|+++... |+.....+.....+..+ ...+. . +.
T Consensus 304 ~gi~~~~~g~ls~~~~l~~~--f~~l~~i~~------r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~ 375 (488)
T KOG2325|consen 304 NGITLSISGILSVILLLLYI--FTRLGKIDK------RRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEE 375 (488)
T ss_pred hhhHHHHHHHHHHHHHHHHH--HHHhhhhcc------ceeeeehHHHHHHhhheeeeeccccccccccccccccCcCccc
Confidence 3333333333333222222 233222100 11112221222211111 11110 0 00
Q ss_pred H-------HHHHHHHHH-HHHHHhhh-----hhHHHHhhcccCchhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCccc
Q psy4738 338 Q-------ILVVTLFTV-GMAFMGFF-----YPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLS 404 (1188)
Q Consensus 338 ~-------~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~ 404 (1188)
. ......+.+ .....+.. .+....+...+.|+..++..|+....+..+-.++|.+...+....|..+
T Consensus 376 y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~ 455 (488)
T KOG2325|consen 376 YSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRP 455 (488)
T ss_pred chhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccH
Confidence 0 000011111 11112222 3355667777899999999999999999999999999998888888766
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhh
Q psy4738 405 SLPFLLMWLTAIVAGWFSDYLVS 427 (1188)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~ 427 (1188)
...+.....+.....+...+.+.
T Consensus 456 v~~~~~~~~l~~~~l~~~~~~r~ 478 (488)
T KOG2325|consen 456 VWIILLCLLLVVAALWIVFLKRL 478 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 65555555555555554444443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.4e-12 Score=156.99 Aligned_cols=331 Identities=17% Similarity=0.215 Sum_probs=3.0
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhh---------------------
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA--------------------- 125 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~--------------------- 125 (1188)
++|+++.++.|++.+.|-++..+..++..++.+|..|-|.+.++.++.+++++++++=.
T Consensus 31 rRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~ 110 (539)
T PF03137_consen 31 RRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSIS 110 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccc
Confidence 89999999999999999999999999999999999999999999999999998765300
Q ss_pred ---h----------------------c--cHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHHHHHHHHHH
Q psy4738 126 ---R----------------------Q--SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGT 178 (1188)
Q Consensus 126 ---~----------------------~--s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~ 178 (1188)
. . -+..++++.++.|+|....++.+.+++-|..++++-+..+|++.+...+|+
T Consensus 111 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGP 190 (539)
T PF03137_consen 111 SNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGP 190 (539)
T ss_dssp -----------------------------------------SSS------------------------------------
T ss_pred cccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccH
Confidence 0 0 135788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcc------C--------------CCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCC------CHhH
Q psy4738 179 VFSSFLSGFLLKYT------D--------------GDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYI------SQRE 232 (1188)
Q Consensus 179 ~ig~~lgg~l~~~~------~--------------~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~------~~~~ 232 (1188)
++|..+|+.+.+.. + ..|-.-|.+.+.+.++..+..+++.++-|++++.. .+++
T Consensus 191 a~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~ 270 (539)
T PF03137_consen 191 ALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQEEKESSERKE 270 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccchhhhhhcch
Confidence 99999999888641 0 13777888888888888877777766555541100 0000
Q ss_pred ----HHH-------------HH---HHHhhhhh---------hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy4738 233 ----KEY-------------LA---DTIGCLAR---------NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLP 283 (1188)
Q Consensus 233 ----~~~-------------~~---~~~~~~~~---------~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~ 283 (1188)
++. .+ +.++...+ +.........++.+++|+|++..++.++.++.++....
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v 350 (539)
T PF03137_consen 271 EDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIV 350 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhh
Confidence 000 00 00000000 33334445778889999999999999999988887655
Q ss_pred H-HHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHH-H-HHHH------------Hh---------------
Q psy4738 284 F-LLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPAS-G-VILA------------SY--------------- 333 (1188)
Q Consensus 284 ~-l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~-~-l~~~------------~~--------------- 333 (1188)
. .+..+|.+++|.+.+|+.-+. +...|.......+.... . .+.+ .+
T Consensus 351 ~ip~~~~G~llGG~ivkk~kl~~----~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~ 426 (539)
T PF03137_consen 351 SIPGAALGILLGGYIVKKFKLSA----RGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCS 426 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcchhheehheEEEEEEEecCcH----HHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCC
Confidence 4 467788899999999886432 11122222222221111 0 0000 00
Q ss_pred --------------hcc----h-HH-HHHHH-HHHHHHHHhhhhhHHHHhhcccCchhhHHHHHHHHHHHhh-hhhhhhH
Q psy4738 334 --------------AGC----D-QI-LVVTL-FTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAI-SGIISPY 391 (1188)
Q Consensus 334 --------------~~~----~-~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~l-gg~i~p~ 391 (1188)
..+ . .. ...++ +...+.......|.......-+++++|+.+.|+...+.++ |.+=+|.
T Consensus 427 Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPI 506 (539)
T PF03137_consen 427 CNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPI 506 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHH
Confidence 000 0 00 11111 1112222333466667777788899999999998887776 4556999
Q ss_pred HHHhhccCCC
Q psy4738 392 LIGILVPNNG 401 (1188)
Q Consensus 392 l~g~l~~~~G 401 (1188)
+.|.++|..-
T Consensus 507 ifG~iiD~tC 516 (539)
T PF03137_consen 507 IFGAIIDSTC 516 (539)
T ss_dssp ----------
T ss_pred HHhHHHhhhh
Confidence 9999999863
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-08 Score=119.86 Aligned_cols=295 Identities=19% Similarity=0.261 Sum_probs=202.5
Q ss_pred HHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhh--hccchhHHHHHHhhccCCC
Q psy4738 84 YWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLG--EGTTFPALNTLLAQWVPPT 161 (1188)
Q Consensus 84 ~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg--~g~~~p~~~~li~~~~p~~ 161 (1188)
.+...+..+..|.++||+|||..+...+....+..+...+. + +++++ +.|+. .+..+....++++|....+
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~---~-~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ---G-YWFFL---LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH---H-HHHhh---hcccccchhhhhhhhhhheeeccchh
Confidence 45667888999999999999999999998888877777665 3 33333 55543 3556788889999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCC---------CHhH
Q psy4738 162 ERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYI---------SQRE 232 (1188)
Q Consensus 162 ~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~---------~~~~ 232 (1188)
+|...+|+.......+..++|.+++.+.+. .|--.+|++..+..++..+...+.+||+-.++... .+..
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~--~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~ 222 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKF--LGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLD 222 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCccc
Confidence 999999999999999999999999999999 89999999999998888888888887763222111 0111
Q ss_pred HHHHH---HHHhhhhhhHHHHHHHHHHHHHHH----------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q psy4738 233 KEYLA---DTIGCLARNKIGHDWGLFMISADL----------PKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAG-WFS 298 (1188)
Q Consensus 233 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l----------p~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g-~ls 298 (1188)
..+.. +..................+...+ +.|++..++++..+.+.+.+.......++..+.. .+.
T Consensus 223 ~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~ 302 (463)
T KOG2816|consen 223 SSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLS 302 (463)
T ss_pred chhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 111111111111111222222333 3466777999999999888888888888887666 666
Q ss_pred HHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHH-HhhcccCchhhHHHHHH
Q psy4738 299 DYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLK-VNALDLSPNYAGTLMAI 377 (1188)
Q Consensus 299 dr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~g~~~g~ 377 (1188)
..++.|+ ...++........+...+....+.... .... ........+... .......++.+|.+.++
T Consensus 303 ~~l~~~~----------~i~lGl~~~~~~~~~~af~~~~w~~~~-~~v~-~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~ 370 (463)
T KOG2816|consen 303 SILGEKR----------LISLGLLSEFLQLLLFAFATETWMMFA-AGVV-VALAGIVFPAIRAFASILVSPEEQGKVFGI 370 (463)
T ss_pred HHHhhhh----------HhhHHHHHHHHHHHHHHHhccchhhhH-HHHH-HHhhcchhHHHHhHHHhhcccccccchhhH
Confidence 6666532 456666666666666655543332221 1111 122233334443 34445667999999999
Q ss_pred HHHHHhhhhhhhhHHHHhhccC
Q psy4738 378 VNGIGAISGIISPYLIGILVPN 399 (1188)
Q Consensus 378 ~~~~~~lgg~i~p~l~g~l~~~ 399 (1188)
...+..+.+.++|.+.+.+...
T Consensus 371 is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 371 ISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred HHHHHHHhhhhhHHHHHHHHHH
Confidence 9999999999999999988643
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.4e-07 Score=104.81 Aligned_cols=363 Identities=17% Similarity=0.082 Sum_probs=225.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCccchhHHHHHHHHHHHHHHHHHHHHH----Hhhcc---
Q psy4738 265 MKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLV-SKDIFSVTVIRKIFTTIASVGPASGVILA----SYAGC--- 336 (1188)
Q Consensus 265 l~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~-~r~~l~~~~~r~~~~~i~~~~~~~~l~~~----~~~~~--- 336 (1188)
+..+++.+....+.+.+++.+... .++..|+.||+.. ...+. |...+..+......++... .....
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~r-----RtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~ 79 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWR-----RTPYIWGGTLLQAGGLAIAPFALLLLAESGQ 79 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCC-----chhhhHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 445588888888888888777664 5889999999987 11111 1222222222222211111 11111
Q ss_pred ----hHH----HHHHHHHHHHHHHhhhhhHHHHhhcccCc-hhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCccchH-
Q psy4738 337 ----DQI----LVVTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLSSL- 406 (1188)
Q Consensus 337 ----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~~~- 406 (1188)
+.+ .....+.+.+.+.......+.+...|..| ++|+.+.++...+.-+|-+++..+.|.++|.+....-.
T Consensus 80 ~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~ 159 (403)
T PF03209_consen 80 QSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQ 159 (403)
T ss_pred ccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHH
Confidence 222 22233333333344445556666677665 78999999999999999999999999999875422111
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhh-hhhHhhhhhccccchhhhHhhhccCCchHHHHHHHHHHHhhhcccccccce
Q psy4738 407 PFLLMWLTAIVAGWFSDYLVSKNIFSVT-VIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKV 485 (1188)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~ 485 (1188)
.+...+...+...++..+..+++.++.+ ..++
T Consensus 160 v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~----------------------------------------------- 192 (403)
T PF03209_consen 160 VIQGVALIALLLNLIALWGQEPRRSRRAAAAER----------------------------------------------- 192 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCcccccCCCC-----------------------------------------------
Confidence 2223333344444444554444433322 0011
Q ss_pred ecccCCCcchhHHHHHHhhhhhccccccceeeeeeccCcccchhHHHHHHHHHHHHHhhhhheeeccccccccCCCCCCC
Q psy4738 486 NALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNSTMLEWRLVFWISFGVIMITNVAYVFMGSGKIQSWNEPRHLL 565 (1188)
Q Consensus 486 ~~~~~~~~~~g~~~~~~~~~~~~~~~igp~i~~~l~~~~t~~~wr~vf~i~a~i~l~~~l~~l~~~~~~~q~w~~~~~~~ 565 (1188)
-+++......- +.. +.+.++-.+|.....+.+..... .
T Consensus 193 ----~~~~f~~a~~~-------------------~~~-~~~a~~f~~fl~l~t~a~~~QD~------------------i 230 (403)
T PF03209_consen 193 ----PRPPFREAWRQ-------------------VWA-SPQARRFFVFLFLGTLAFFMQDV------------------I 230 (403)
T ss_pred ----CCccHHHHHHH-------------------HHh-CCChhHHHHHHHHHHHHHHhhHH------------------H
Confidence 00000000000 010 11111112222222111111111 1
Q ss_pred cccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhh-hhCChhHHHHHHHHHHHHHHHhhhhc-ccchhHHHHHHHH
Q psy4738 566 PEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQ-KFGGKHTLGFGILSTAIFTILTPMAA-YMGPVWLIVWRFF 643 (1188)
Q Consensus 566 a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~D-r~Grr~~l~~~~~~~~i~~ll~a~a~-~~~~~~l~~~R~l 643 (1188)
-+|-=.+-||++..|..-+...+..+..++....|++.. |.++|+.-..++....++-.+..++. .-+.+.+...=++
T Consensus 231 LEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l 310 (403)
T PF03209_consen 231 LEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFL 310 (403)
T ss_pred cCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 234445679999999999999999999999999999887 78888877777776666555433321 1146779999999
Q ss_pred HHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc----CC----CCchHHHHHHHHHHHHH
Q psy4738 644 EGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKL----TN----NYWPVVFYLFGAVAILW 715 (1188)
Q Consensus 644 ~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~----~g----~gWr~~F~i~~~~~~~~ 715 (1188)
.|++.|.....+.+..-+..++++.|..+|.|++.+.++..+|..+||.+.+. .+ .++-.+|.++.+.-++.
T Consensus 311 ~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a 390 (403)
T PF03209_consen 311 LGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAA 390 (403)
T ss_pred HHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988763 12 24888999988877776
Q ss_pred HHHHHhh
Q psy4738 716 FVVWLFI 722 (1188)
Q Consensus 716 ~~~~~~~ 722 (1188)
..+...+
T Consensus 391 ~~ll~~l 397 (403)
T PF03209_consen 391 LVLLGRL 397 (403)
T ss_pred HHHHHHh
Confidence 6554443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.8e-09 Score=129.94 Aligned_cols=265 Identities=17% Similarity=0.190 Sum_probs=203.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHh
Q psy4738 11 ILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIM 90 (1188)
Q Consensus 11 ~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~ 90 (1188)
..++++.+..+...+....++..+..+. +.|+++.++.|++.+.|-++..+.
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiE----------------------------rRF~i~Ss~sG~I~s~~dig~~l~ 148 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIE----------------------------RRFKISSSQSGLIASSYDIGNLLL 148 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhh----------------------------hhcCCCCCcceeEeeecccchhhh
Confidence 3445555556666665555555555555 789999999999999999999999
Q ss_pred HhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHh------------h---------------------------------
Q psy4738 91 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA------------A--------------------------------- 125 (1188)
Q Consensus 91 ~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a------------~--------------------------------- 125 (1188)
..+..+.+.|.-|-+.+.+++++++++++++++= .
T Consensus 149 i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 228 (735)
T KOG3626|consen 149 IIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKR 228 (735)
T ss_pred hHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccc
Confidence 9999999999999999999999999999988751 0
Q ss_pred --hcc--HH-HHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-C------
Q psy4738 126 --RQS--AN-WLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT-D------ 193 (1188)
Q Consensus 126 --~~s--~~-~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~-~------ 193 (1188)
..+ ++ .++++.++.|+|+...+|.+.+++-|...+++-+..+|+++....+|+++|.++|+++.+.. +
T Consensus 229 ~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~ 308 (735)
T KOG3626|consen 229 EKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPI 308 (735)
T ss_pred cccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCC
Confidence 000 23 67789999999999999999999999999999999999999999999999999999988752 1
Q ss_pred ----------CCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCC---------CCHh--------HH---HHHHHHHhhh
Q psy4738 194 ----------GDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPY---------ISQR--------EK---EYLADTIGCL 243 (1188)
Q Consensus 194 ----------~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~---------~~~~--------~~---~~~~~~~~~~ 243 (1188)
.-|..-|.+.|.+.++..+..+++.++.|++.++ ..++ .. +++.+.+++.
T Consensus 309 ~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~l 388 (735)
T KOG3626|consen 309 GITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRL 388 (735)
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHH
Confidence 1477788899999998888888887777654321 0000 00 1111122211
Q ss_pred hh---------hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Q psy4738 244 AR---------NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPF-LLMWLTAIVAGWFSDYLVS 303 (1188)
Q Consensus 244 ~~---------~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~-l~~~ig~~~~g~lsdr~~~ 303 (1188)
.. ...+....+.+..+++|+|++..+|.+...+..+..... -+..+|.+++|++..|+.-
T Consensus 389 l~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl 458 (735)
T KOG3626|consen 389 LSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKL 458 (735)
T ss_pred hcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecc
Confidence 11 334445567888999999999999999999998886554 4455677889988888764
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.6e-09 Score=122.76 Aligned_cols=153 Identities=20% Similarity=0.276 Sum_probs=122.2
Q ss_pred ccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCC-hhHHHHHHHHHHHHHHHh-hhh--cccchhHHHHHHHHHHhhc
Q psy4738 573 EFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGG-KHTLGFGILSTAIFTILT-PMA--AYMGPVWLIVWRFFEGLGE 648 (1188)
Q Consensus 573 ~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Gr-r~~l~~~~~~~~i~~ll~-a~a--~~~~~~~l~~~R~l~Gig~ 648 (1188)
|.+.+.+-.||+.++..++.+++.+..|....|.|. |+-++.+.++..+++++- +++ ++..-+.++++|++.|+|.
T Consensus 65 D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~ 144 (488)
T KOG2325|consen 65 DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV 144 (488)
T ss_pred CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc
Confidence 577788889999999999999999999999999996 777888999999999988 333 3335678999999999996
Q ss_pred ccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc-----------hHHHHHHHHHHHHHHH
Q psy4738 649 GTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYW-----------PVVFYLFGAVAILWFV 717 (1188)
Q Consensus 649 g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gW-----------r~~F~i~~~~~~~~~~ 717 (1188)
| .....-+|+++-...++|.|+++..+.+..+|.++||.++..+......|| -.+=|+..++.++..+
T Consensus 145 ~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v 223 (488)
T KOG2325|consen 145 G-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIV 223 (488)
T ss_pred c-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHH
Confidence 5 456778999998889999999999999999999999999988875433332 2344666666666665
Q ss_pred HHHhhccCC
Q psy4738 718 VWLFIGYSE 726 (1188)
Q Consensus 718 ~~~~~~~~~ 726 (1188)
...+..+|.
T Consensus 224 ~i~~~f~E~ 232 (488)
T KOG2325|consen 224 IILFFFKEV 232 (488)
T ss_pred HHHhheeec
Confidence 555555443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.9e-08 Score=113.59 Aligned_cols=142 Identities=26% Similarity=0.353 Sum_probs=122.6
Q ss_pred ccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhh-hCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhcccc
Q psy4738 573 EFDWDETTQGLILGSFYWGYVIMHIPGGLLAQK-FGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTT 651 (1188)
Q Consensus 573 ~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr-~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g~~ 651 (1188)
.+|.|+++..-+.++|.--.=+..++.|+++|| .|+|+.+..+.++..+|-++.+.....+...++++=++.++|.|..
T Consensus 55 gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~ 134 (498)
T COG3104 55 GLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLF 134 (498)
T ss_pred cCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccc
Confidence 378899988888888887777889999999999 7999999999999999999988773123445999999999999999
Q ss_pred hhHHHHHHHhccCCC--cchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH
Q psy4738 652 FPAANQLLAAWIPKT--ERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWF 716 (1188)
Q Consensus 652 ~p~~~~~i~~~~~~~--~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~ 716 (1188)
=|....+++|.||++ +|-..++++..+.++|+.++|++.+++.+..| |+..|...++--.+.+
T Consensus 135 K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g--~~~gF~~aavGm~~gl 199 (498)
T COG3104 135 KPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYG--WHVGFGLAAVGMIIGL 199 (498)
T ss_pred cccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhC--HHHHHHHHHHHHHHHH
Confidence 999999999999764 46677889999999999999999999999998 9999998776444433
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.5e-07 Score=106.98 Aligned_cols=323 Identities=21% Similarity=0.233 Sum_probs=195.3
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccC-----chHHHHHHHHHHHHHHHHHHHhhh--ccHHHHHHHHHHH
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFG-----GKHTLGFGILSTAIFTLLTPFAAR--QSANWLIALRFFE 139 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~G-----rk~vl~~~lll~~v~sll~a~a~~--~s~~~lli~R~l~ 139 (1188)
+++|++++|.+...+...+...+ .++.|.++|.+- ||+-++++.++.+++.+..+..+. .+.....++=++.
T Consensus 18 ~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la 96 (433)
T PF03092_consen 18 DDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLA 96 (433)
T ss_pred HHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHH
Confidence 68999999999988888887655 589999999884 444555566666555554544321 3566666677888
Q ss_pred HhhhccchhHHHHHHhhcc--CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhh
Q psy4738 140 GLGEGTTFPALNTLLAQWV--PPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL 217 (1188)
Q Consensus 140 Glg~g~~~p~~~~li~~~~--p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~ 217 (1188)
-+|.+..-..+-+++.|.. .|++|+...+.......+|.+++..++|.+.+. .++|+.|.+.+++..+..+...++
T Consensus 97 ~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~--~~~~~~f~i~~~~~~l~~~~~~~~ 174 (433)
T PF03092_consen 97 SFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS--FGPQGVFLISAALPLLMLIVALFL 174 (433)
T ss_pred HHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc--CCCeEEehHHHHHHHHHHHHHHHh
Confidence 8888888888888888876 355588999999999999999999999999998 899999999988888887777777
Q ss_pred cccCCCCCCC----CCHhHHHH----HHHHHhhhhh----hHHHHHHHHHHHHHHHHH---------HHHHHhC---CCH
Q psy4738 218 CYNDPASHPY----ISQREKEY----LADTIGCLAR----NKIGHDWGLFMISADLPK---------YMKSVMK---FSI 273 (1188)
Q Consensus 218 ~~~~p~~~~~----~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~lp~---------yl~~~~g---~s~ 273 (1188)
.+|.++.++. ..+++... .++......+ ........++.+...++. +..+..+ +|.
T Consensus 175 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~gp~fs~ 254 (433)
T PF03092_consen 175 LEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQTDALGGPHFSP 254 (433)
T ss_pred hhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEeccccccccCH
Confidence 7653222111 00110000 1111111111 000000010111111111 1122345 777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhc--------chHHHHHH-H
Q psy4738 274 AKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAG--------CDQILVVT-L 344 (1188)
Q Consensus 274 ~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~--------~~~~~~~~-~ 344 (1188)
...+.+..+..++.+++..+..+ +.++.. .|+.+.....+.....+.-..... ++.+.... -
T Consensus 255 ~f~~~~~~vg~~~~l~g~~~y~~----~~~~~~-----~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~ 325 (433)
T PF03092_consen 255 SFYGTLSIVGSIASLLGILLYRK----YFSNWS-----WRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDT 325 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHhCCC-----HHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhH
Confidence 77777776656666666555443 333221 255554444443333322111110 11111111 1
Q ss_pred HHHHHHHHhhhhhHHHHhhcccCchhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCC
Q psy4738 345 FTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNNG 401 (1188)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G 401 (1188)
.+......-...|.........++...|+..|+..++.++|..++..++..+.+..+
T Consensus 326 ~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 326 ILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 111222222234444455555566889999999999999999999999999887666
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-06 Score=103.51 Aligned_cols=313 Identities=17% Similarity=0.192 Sum_probs=199.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhh
Q psy4738 284 FLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNA 363 (1188)
Q Consensus 284 ~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (1188)
++...+.+...|.++||+|||..+ ....++.+.+..+..... ++..+ +.-..++..........+.
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L-------~~~~~~~~l~~~~~~~~~------~~~~~-~~~l~g~~~~~~s~~~a~v 137 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVL-------LLPLFGTILPALCLLFQG------YWFFL-LLGLSGGFSAIFSVGFAYV 137 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhH-------HHHHHHHHHhHHHHHHHH------HHHhh-hcccccchhhhhhhhhhhe
Confidence 677888899999999999976431 111222222322222222 12212 2222233334455556666
Q ss_pred cccCc-hhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCccchHHHHHHHHHHHHHHHHHhhhhhcccc-hhhh---hhH
Q psy4738 364 LDLSP-NYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSDYLVSKNIF-SVTV---IRK 438 (1188)
Q Consensus 364 ~~~~p-~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~k 438 (1188)
.|... +.|....|+.+..-..+..++|.+.+.+.+..| ....+.+..+..+...+......++... ++.. .++
T Consensus 138 adis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~--~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~ 215 (463)
T KOG2816|consen 138 ADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG--IALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRE 215 (463)
T ss_pred eeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHhhccccccCccccccccccc
Confidence 77665 789999999999999999999999999999866 3444555555555444444333332221 1111 000
Q ss_pred hhhhhccccchhhhHhhhccCCchHHHHHHHHHHHhhhcccccccceecccCCCcchhHHHHHHhhhhhccccccceeee
Q psy4738 439 IFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIG 518 (1188)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~igp~i~~ 518 (1188)
. ... +.+.++.. .
T Consensus 216 ~-~~~---------------------------------------------~~~~~~~~---------------------~ 228 (463)
T KOG2816|consen 216 L-TPG---------------------------------------------SLDSSHVA---------------------D 228 (463)
T ss_pred c-CCC---------------------------------------------cccchhhh---------------------h
Confidence 0 000 00000000 0
Q ss_pred eeccCcc-cchhHHHHHHHHHHHHHhhhhheeeccccccccCCCCCCCcccccccccCcchhhhhHHHHHHHHHHHHHHh
Q psy4738 519 ILVPNST-MLEWRLVFWISFGVIMITNVAYVFMGSGKIQSWNEPRHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHI 597 (1188)
Q Consensus 519 ~l~~~~t-~~~wr~vf~i~a~i~l~~~l~~l~~~~~~~q~w~~~~~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~ 597 (1188)
. .+... ..+-|....++....+...... .+... ...-..+..+++++++.++..+.......++++
T Consensus 229 ~-~~~~~~~~~~r~~l~l~l~~~~~~~~~~-----------~~~~~-~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l 295 (463)
T KOG2816|consen 229 A-FQSLTKVGPDRLLLLLLLVAFLSSLPEA-----------GGASD-VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQL 295 (463)
T ss_pred h-hhhhcccCCCccchHHHHHHHHHHHHHh-----------cCcee-EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHH
Confidence 0 00001 1112222222222222222111 11110 112345678999999999999988888888888
Q ss_pred hhh-hhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHH
Q psy4738 598 PGG-LLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVW 676 (1188)
Q Consensus 598 ~~G-~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~ 676 (1188)
... .+...+|-|+++..|+..-.+.....++++ +.|+++...++.++. ....|+.-+.++.+.+++|||+++++..
T Consensus 296 ~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~--~~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~e~g~v~~~is 372 (463)
T KOG2816|consen 296 LLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT--ETWMMFAAGVVVALA-GIVFPAIRAFASILVSPEEQGKVFGIIS 372 (463)
T ss_pred HHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc--cchhhhHHHHHHHhh-cchhHHHHhHHHhhcccccccchhhHHH
Confidence 887 788889999999999999999999999999 778889988888876 7788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy4738 677 AGIIMGTVISSSLTGLLLK 695 (1188)
Q Consensus 677 ~~~~~G~~~g~~l~g~l~~ 695 (1188)
....+.+.++|.+-+.+..
T Consensus 373 ~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 373 GIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred HHHHHhhhhhHHHHHHHHH
Confidence 9999999999999887754
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-06 Score=98.21 Aligned_cols=227 Identities=13% Similarity=0.062 Sum_probs=147.2
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccc
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTT 146 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~ 146 (1188)
+++|.++.|++.+...-+...++..++.|.++||+|||+.-+...++.+++++. -.. ++++.+++.|++-|++.+..
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~--~~~~~L~~GRvlgGiaTSLL 138 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHS--SNYPVLLLGRVLGGIATSLL 138 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-Hhc--cccHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999988888888887754 344 78999999999999999888
Q ss_pred hhHHHHH-Hhhc----cCCCchhhHHHHHH-HHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhccc
Q psy4738 147 FPALNTL-LAQW----VPPTERGKIGSFVF-AGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN 220 (1188)
Q Consensus 147 ~p~~~~l-i~~~----~p~~~Rg~~~gi~~-~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~ 220 (1188)
+.+--+. +.|. +|++..+.-.+... ..+.+-.+++..++-++++..+.|-.++|....++.++..++....-+|
T Consensus 139 fS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~E 218 (354)
T PF05631_consen 139 FSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPE 218 (354)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccc
Confidence 8877664 4443 34444444444333 3344445556666666666633455889988777777666555544444
Q ss_pred CCCCCCCCCHhHHHHHH---HHHhhhhh------hHHHHHHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q psy4738 221 DPASHPYISQREKEYLA---DTIGCLAR------NKIGHDWGLFMI-SADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLT 290 (1188)
Q Consensus 221 ~p~~~~~~~~~~~~~~~---~~~~~~~~------~~~~~~~~~~~~-~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig 290 (1188)
.+.++.... +..+..+ +.+....+ .+.+.....|.+ ..|.|..-.+ + +..--|++++...+..++|
T Consensus 219 Nyg~~~~~~-~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~--~-~~~P~GlIFssFM~a~MlG 294 (354)
T PF05631_consen 219 NYGDTSSSS-SLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPD--D-EELPLGLIFSSFMVAMMLG 294 (354)
T ss_pred cCCCccccc-chHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceecCC--C-CCCCchHHHHHHHHHHHHH
Confidence 433211111 1111111 12222111 333333444443 3466665411 1 1234789999999999999
Q ss_pred HHHHHHHHHH
Q psy4738 291 AIVAGWFSDY 300 (1188)
Q Consensus 291 ~~~~g~lsdr 300 (1188)
+.+..++..+
T Consensus 295 S~lf~~l~s~ 304 (354)
T PF05631_consen 295 SSLFSRLLSK 304 (354)
T ss_pred HHHHHHHHhC
Confidence 8887665543
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4e-06 Score=94.17 Aligned_cols=135 Identities=35% Similarity=0.615 Sum_probs=116.0
Q ss_pred hhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcc--HHHHHHHHHHHHhhhccchhHHH
Q psy4738 74 KTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQS--ANWLIALRFFEGLGEGTTFPALN 151 (1188)
Q Consensus 74 ~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s--~~~lli~R~l~Glg~g~~~p~~~ 151 (1188)
.+.++..+.+.++..+++++.|.++||+|||+.+..+.....++.+++++. .+ .+.+++.|+.+|++.+...|...
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~ 116 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA--PNVGLALLLILRLLQGLGGGGLLPVAS 116 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhhhHHHHHHHH
Confidence 588999999999999999999999999999999888887767777788777 54 89999999999999999999999
Q ss_pred HHHhhccCC-CchhhHHHHHHH-HHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHH
Q psy4738 152 TLLAQWVPP-TERGKIGSFVFA-GNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLW 210 (1188)
Q Consensus 152 ~li~~~~p~-~~Rg~~~gi~~~-~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~ 210 (1188)
+++.+++|+ ++|+...+.... ...+|..+++.+++.+......+||+.|.+........
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (338)
T COG0477 117 ALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLL 177 (338)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 999999988 789999999888 58889999988887776532258999887777666544
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.9e-06 Score=91.06 Aligned_cols=152 Identities=14% Similarity=0.079 Sum_probs=117.4
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhh-----ccHHHHHHHHHHHHh
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR-----QSANWLIALRFFEGL 141 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~-----~s~~~lli~R~l~Gl 141 (1188)
+.+|.|.+|...+.++-.+|..++ ++.|.+.||+|+|.++.++.+...++-.+.-++.+ .++|.+.+.-++.|.
T Consensus 30 ~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~ 108 (250)
T PF06813_consen 30 SRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGN 108 (250)
T ss_pred HHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcc
Confidence 689999999999999999998875 88999999999999999999988888777766532 367889999999999
Q ss_pred hhccchhHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccC
Q psy4738 142 GEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYND 221 (1188)
Q Consensus 142 g~g~~~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~ 221 (1188)
+.+....++.....+.|| ++||++.|+.-...+++..+-.-+...+.+. ..-+. +++.+....++++...++++..
T Consensus 109 s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~--~~~~f-ll~la~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 109 SSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD--DPSSF-LLFLAVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred cHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC--ChHHH-HHHHHHHHHHHHHHHhhheecc
Confidence 888888888888889997 5899999999999999988766666666554 22333 3344444444444444444444
Q ss_pred CC
Q psy4738 222 PA 223 (1188)
Q Consensus 222 p~ 223 (1188)
|+
T Consensus 185 ~~ 186 (250)
T PF06813_consen 185 PP 186 (250)
T ss_pred CC
Confidence 43
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.5e-06 Score=93.60 Aligned_cols=147 Identities=12% Similarity=0.055 Sum_probs=105.6
Q ss_pred cccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhcccc
Q psy4738 572 YEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTT 651 (1188)
Q Consensus 572 ~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g~~ 651 (1188)
+++|.+..|++.+...-..+..+..++.|.++||+|||+.-+.-.++.++.++.- ..+ +++.|+++|++.|++.+..
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k-~~~--~~~~L~~GRvlgGiaTSLL 138 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK-HSS--NYPVLLLGRVLGGIATSLL 138 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-hcc--ccHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999888888888888643 345 4566999999999999988
Q ss_pred hhHHHHHH-Hhcc----CCCcchhHHHHHH-HHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHh
Q psy4738 652 FPAANQLL-AAWI----PKTERGKVGAFVW-AGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLF 721 (1188)
Q Consensus 652 ~p~~~~~i-~~~~----~~~~rg~~~g~~~-~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~ 721 (1188)
+.+--+.+ .|.- |++..+..++... ...++-.+.+.+++-++.+..+.|=.++|....++.++..++...
T Consensus 139 fS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~ 214 (354)
T PF05631_consen 139 FSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILK 214 (354)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHh
Confidence 87766544 3332 2233333333222 223344556666666766666644588898877777766555443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.3e-07 Score=96.69 Aligned_cols=153 Identities=15% Similarity=0.116 Sum_probs=121.5
Q ss_pred cccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhc-----ccchhHHHHH
Q psy4738 566 PEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAA-----YMGPVWLIVW 640 (1188)
Q Consensus 566 a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~-----~~~~~~l~~~ 640 (1188)
-.|++++.+|.|.+|.+.+.+.-.+|..+ .++.|.+.|++|+|.++.+|.+...++-...-++- +.+.|++.+.
T Consensus 24 yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~ 102 (250)
T PF06813_consen 24 YSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLF 102 (250)
T ss_pred hhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHH
Confidence 34889999999999999999999999886 48889999999999999999999888888766442 2357889999
Q ss_pred HHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHH
Q psy4738 641 RFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWL 720 (1188)
Q Consensus 641 R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~ 720 (1188)
-++.|.+.+....++.....+.|| ++||++.|+.-+..++++.+=..+...+-+... -+..+.+...+.++..+..+
T Consensus 103 ~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~--~~fll~la~~~~~v~l~~~~ 179 (250)
T PF06813_consen 103 LFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDP--SSFLLFLAVLPAVVCLVAMF 179 (250)
T ss_pred HHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHHHhh
Confidence 999999988888888888888997 689999999999999998887777777766543 44444444444444444444
Q ss_pred hh
Q psy4738 721 FI 722 (1188)
Q Consensus 721 ~~ 722 (1188)
++
T Consensus 180 ~v 181 (250)
T PF06813_consen 180 FV 181 (250)
T ss_pred he
Confidence 44
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.8e-05 Score=90.74 Aligned_cols=374 Identities=15% Similarity=0.150 Sum_probs=212.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcc---h
Q psy4738 261 LPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGC---D 337 (1188)
Q Consensus 261 lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~---~ 337 (1188)
.-.|+++.+|+++.+...+.....+. +...++.|.++|.+--++. -||....++.+...+..+.+...+. +
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~-----rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s 85 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGY-----RRKPYMIIGWLLGAVSALVLALLPASESS 85 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCC-----cchHHHHHHHHHHHHHHHHHHhcccccch
Confidence 34577888999999877766655543 4567889999998742211 1666666676666555554444332 2
Q ss_pred HHHHHHHHHHHHHHHhhhhh---HHHHhhcccCchhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCccchHHHHHHHHH
Q psy4738 338 QILVVTLFTVGMAFMGFFYP---SLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLT 414 (1188)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~~~~~~~~~~~~~ 414 (1188)
.....+.+.+...+....-. ....-...-.|+.+|...+.......+|+.++..+.|.+.+..+....+ .+...+
T Consensus 86 ~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f--~i~~~~ 163 (433)
T PF03092_consen 86 AAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVF--LISAAL 163 (433)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEe--hHHHHH
Confidence 33333333333333333322 2233333334555899999999999999999999999999988765543 333333
Q ss_pred HHHHHHHHhhhhhc-ccchhhhhh---HhhhhhccccchhhhHhhhccCCchHHHHHHHHHHHhhhcccccccceecccC
Q psy4738 415 AIVAGWFSDYLVSK-NIFSVTVIR---KIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDL 490 (1188)
Q Consensus 415 ~~~~~~~~~~~~~~-~~~~~~~~~---k~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~ 490 (1188)
..+..+......++ +.++..+.. +.-.. ..
T Consensus 164 ~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~~-------------------------------------------- 197 (433)
T PF03092_consen 164 PLLMLIVALFLLEERKVRPADEVFSFGKEEVP--CL-------------------------------------------- 197 (433)
T ss_pred HHHHHHHHHHhhhhccccccchhhcccccccc--hh--------------------------------------------
Confidence 33333333333332 111111100 00000 00
Q ss_pred CCcchhHHHHHHhhhhhccccccceeeeeeccCcccchhHHHHHHHHHHHHHhhhhheeeccccccccCCCCCCCccccc
Q psy4738 491 SPNYAGTLMAIVNGIGAISGIISPYLIGILVPNSTMLEWRLVFWISFGVIMITNVAYVFMGSGKIQSWNEPRHLLPEESQ 570 (1188)
Q Consensus 491 ~~~~~g~~~~~~~~~~~~~~~igp~i~~~l~~~~t~~~wr~vf~i~a~i~l~~~l~~l~~~~~~~q~w~~~~~~~a~~~i 570 (1188)
.+........+-..++ .+.-|+.... .+++....... ..+.. .--.
T Consensus 198 ~~~~~~~~~~l~~~~~------------------~~~i~~~~~~---~~~~~~~~~~~--~~a~~-----------fy~~ 243 (433)
T PF03092_consen 198 FGSFREQLSELWRALQ------------------QRAIWQPILF---FIFFFNLPPSI--SSASS-----------FYFQ 243 (433)
T ss_pred hHHHHHHHHHHHHHHh------------------hhHHHHHHHH---HHHHHHhccCC--CCccE-----------EEEE
Confidence 0000000000100100 1111222210 11111110000 00000 0011
Q ss_pred cccc---CcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhh-hhcccc-------hhHHHH
Q psy4738 571 QYEF---DWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTP-MAAYMG-------PVWLIV 639 (1188)
Q Consensus 571 ~~~~---~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a-~a~~~~-------~~~l~~ 639 (1188)
.++. |.|+...+.+.....++..++...+.+..-+..-|+++..+.++..+.++... +.+..+ .+-.+.
T Consensus 244 ~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lg 323 (433)
T PF03092_consen 244 TDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALG 323 (433)
T ss_pred eccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEE
Confidence 1223 37888889988888899999999999998899999999988888877777533 121111 022333
Q ss_pred HHHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC------CchHHHHHHHHHHH
Q psy4738 640 WRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNN------YWPVVFYLFGAVAI 713 (1188)
Q Consensus 640 ~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~------gWr~~F~i~~~~~~ 713 (1188)
--++..+.....+-....+++|..|+...|..++++.+..++|..++..++..+.+..+- +-.+..++.....+
T Consensus 324 d~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~l 403 (433)
T PF03092_consen 324 DTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQL 403 (433)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHH
Confidence 456666666667888889999999999999999999999999999999999999886551 12234445555554
Q ss_pred HHHHHHHhh
Q psy4738 714 LWFVVWLFI 722 (1188)
Q Consensus 714 ~~~~~~~~~ 722 (1188)
+...+..++
T Consensus 404 l~l~ll~lL 412 (433)
T PF03092_consen 404 LPLPLLFLL 412 (433)
T ss_pred HHHHHHHHc
Confidence 444444444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-06 Score=98.68 Aligned_cols=146 Identities=30% Similarity=0.531 Sum_probs=120.6
Q ss_pred cccccCcch--hhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhh
Q psy4738 570 QQYEFDWDE--TTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLG 647 (1188)
Q Consensus 570 i~~~~~~s~--~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig 647 (1188)
...+++.+. .+.++..+.+.++..+++++.|+++||+|||+.+..+...+.++.+.+++.++.+.+.+++.|+.+|++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 107 (338)
T COG0477 28 LLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLG 107 (338)
T ss_pred HHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhh
Confidence 334444343 578999999999999999999999999999999988887777777788777743467799999999999
Q ss_pred cccchhHHHHHHHhccCC-CcchhHHHHHHH-HHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHH
Q psy4738 648 EGTTFPAANQLLAAWIPK-TERGKVGAFVWA-GIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILW 715 (1188)
Q Consensus 648 ~g~~~p~~~~~i~~~~~~-~~rg~~~g~~~~-~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~ 715 (1188)
.+...|....++.|++|+ ++|+...+.... ...+|..++|.+++.+......+||+.|.+........
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (338)
T COG0477 108 GGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLL 177 (338)
T ss_pred hHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 999999999999999988 789999999999 58889999998888777652224999887777666544
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00011 Score=85.59 Aligned_cols=308 Identities=17% Similarity=0.153 Sum_probs=192.5
Q ss_pred CcccCChhhHH-HHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhcc
Q psy4738 67 NEFDWDEKTQG-LILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGT 145 (1188)
Q Consensus 67 ~~~~~s~~~~g-~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~ 145 (1188)
++.|.+..|.. -+.-.....|.+..+|...+.|..+-|++++.+.+...+.-.+.-+. ++...+-+.-+.-|++.+.
T Consensus 33 ~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~--~sv~~mq~~q~~yg~~~a~ 110 (412)
T PF01770_consen 33 PDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG--TSVLAMQLMQFFYGLATAA 110 (412)
T ss_pred CccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHHH
Confidence 34788888775 57778889999999999999999999999999999888888888888 9999999999999999777
Q ss_pred chhHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCC-
Q psy4738 146 TFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPAS- 224 (1188)
Q Consensus 146 ~~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~- 224 (1188)
-.+-++++-...|+++--|+.+...++..+|-.++..+|-.+......+.+..+++.... .....++.+++|..+.+
T Consensus 111 -evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~-~~~a~~~~~fLP~~~~S~ 188 (412)
T PF01770_consen 111 -EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLAS-VSLALLIALFLPMPKRSL 188 (412)
T ss_pred -HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHHHHHHHHcCCCCccc
Confidence 577789999999999999999999999999999999999888876323445555554332 33334444444443221
Q ss_pred --CCCC-----------------CHh----------HHHHHHHHHhhhhh----------------hHHHHHHHHHHHHH
Q psy4738 225 --HPYI-----------------SQR----------EKEYLADTIGCLAR----------------NKIGHDWGLFMISA 259 (1188)
Q Consensus 225 --~~~~-----------------~~~----------~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~ 259 (1188)
|+.. .++ ++......+....+ -......+++-+..
T Consensus 189 ~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~n 268 (412)
T PF01770_consen 189 FFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVIN 268 (412)
T ss_pred ceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHH
Confidence 1100 000 00000011100000 11122223333444
Q ss_pred HHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy4738 260 DLPKYMKSV--MKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCD 337 (1188)
Q Consensus 260 ~lp~yl~~~--~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~ 337 (1188)
+.-...+++ -+-+..-+|.+-+...+.+.++++..|++..++.+ .......+..+..+.+++...... +
T Consensus 269 YvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~--------~~~l~l~~~S~l~a~~L~lm~~t~-~ 339 (412)
T PF01770_consen 269 YVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDR--------WGELALGVFSLLQAGLLFLMSFTG-N 339 (412)
T ss_pred HHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHH--------HHHHHHHHHHHHHHHHHHHHHHhh-H
Confidence 444444443 23344568999999999999999999988444432 133334444444445555554443 3
Q ss_pred HHHHHHHHHHHHHHHhh-hhhHHHHhhcccCchhhHHHHHHHHHHHhhhhh
Q psy4738 338 QILVVTLFTVGMAFMGF-FYPSLKVNALDLSPNYAGTLMAIVNGIGAISGI 387 (1188)
Q Consensus 338 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~g~~~g~~~~~~~lgg~ 387 (1188)
.+......++......+ ..-........+..+.-|...|++++++.+-..
T Consensus 340 Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQt 390 (412)
T PF01770_consen 340 IWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQT 390 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHHH
Confidence 33333333333333333 333334444555666677777777766554443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.7e-05 Score=90.50 Aligned_cols=154 Identities=21% Similarity=0.200 Sum_probs=122.5
Q ss_pred ccccc-ccCcchhhhh-HHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH
Q psy4738 568 ESQQY-EFDWDETTQG-LILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEG 645 (1188)
Q Consensus 568 ~~i~~-~~~~s~~~~~-~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~G 645 (1188)
|-+.+ |-|++.+|.. -+.-...-+|....+|...+.|..|.|++++.+.+...+...+.-+.+ +.+.+-+..+.-|
T Consensus 28 ~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~--sv~~mq~~q~~yg 105 (412)
T PF01770_consen 28 PYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGT--SVLAMQLMQFFYG 105 (412)
T ss_pred HHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHC--cHHHHHHHHHHHH
Confidence 44444 3788887765 455677778889999999999999999999999999888888888888 7778999999999
Q ss_pred hhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhccC
Q psy4738 646 LGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYS 725 (1188)
Q Consensus 646 ig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~~ 725 (1188)
++.+. -.+-.+++-...|+++-.|+.+..-+..-+|-.++.++|-.+.+..+...+..+++......+..+..++ +|.
T Consensus 106 ~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~f-LP~ 183 (412)
T PF01770_consen 106 LATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALF-LPM 183 (412)
T ss_pred HHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH-cCC
Confidence 99887 4566778878889999999999999999999999999999888865544777777766544444444444 444
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00079 Score=84.45 Aligned_cols=149 Identities=18% Similarity=0.251 Sum_probs=120.9
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhccc-CchHHHHHHHHHHHHHHHHHHHhhhcc------HHHHHHHHHHH
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKF-GGKHTLGFGILSTAIFTLLTPFAARQS------ANWLIALRFFE 139 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~-Grk~vl~~~lll~~v~sll~a~a~~~s------~~~lli~R~l~ 139 (1188)
+.+|++.++...+.+.|....-+..+++|+++|++ |+++.+..+.++..++.++.++.+.+. ....+++=.+.
T Consensus 16 ~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLi 95 (654)
T TIGR00926 16 NFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALI 95 (654)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHH
Confidence 45889999999999999999999999999999975 999999999999999888877753211 23355677778
Q ss_pred HhhhccchhHHHHHHhhccCCCc---hhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CCCCChhHHHHHHHHHHHH
Q psy4738 140 GLGEGTTFPALNTLLAQWVPPTE---RGKIGSFVFAGNQIGTVFSSFLSGFLLKYT-----DGDWPEIFYLFGILGVLWF 211 (1188)
Q Consensus 140 Glg~g~~~p~~~~li~~~~p~~~---Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~-----~~gWr~~F~i~g~i~li~~ 211 (1188)
.+|.|+.-|+..+..+|.+++++ |-+...+++.+.++|..+++++.+++.+.. ..||...|.+.++..++..
T Consensus 96 a~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~ 175 (654)
T TIGR00926 96 ALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILAL 175 (654)
T ss_pred HhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHH
Confidence 89999999999999999998643 677888889999999999999999987441 0369999999887777665
Q ss_pred HHHh
Q psy4738 212 VAWC 215 (1188)
Q Consensus 212 il~~ 215 (1188)
++..
T Consensus 176 lvf~ 179 (654)
T TIGR00926 176 IVFM 179 (654)
T ss_pred HHHH
Confidence 5444
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.037 Score=66.64 Aligned_cols=121 Identities=10% Similarity=-0.006 Sum_probs=92.3
Q ss_pred cCChhhHHHHHHHHHHHHHHh-HhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcc--------------------
Q psy4738 70 DWDEKTQGLILSAFYWGYVIM-HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQS-------------------- 128 (1188)
Q Consensus 70 ~~s~~~~g~l~s~~~lg~~i~-~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s-------------------- 128 (1188)
+-+.+...++-+...+...+. .++.+++++|++|++++-.....+...-++.++...++
T Consensus 39 ~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~ 118 (472)
T TIGR00769 39 GSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPG 118 (472)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchh
Confidence 335578899999887777776 99999999999999999888887777666666552211
Q ss_pred ---------HHHHHHHHHHHHhhhccchh-HHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4738 129 ---------ANWLIALRFFEGLGEGTTFP-ALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLK 190 (1188)
Q Consensus 129 ---------~~~lli~R~l~Glg~g~~~p-~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~ 190 (1188)
.|...+.=+..-+-...... .-.....|.+..+|-.|..+++..+.++|.++++.+..++.+
T Consensus 119 ~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 119 FMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333444454444454 667889999999999999999999999999999999999874
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0068 Score=71.97 Aligned_cols=108 Identities=15% Similarity=0.135 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccC
Q psy4738 80 LSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVP 159 (1188)
Q Consensus 80 ~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p 159 (1188)
+++-+..+.++.+..+.+.|+.|+|+.+.++...+....+..-+ .|-+-+++.-++.|+|.+..+...-.++.+..+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~---~N~y~~yfssallG~Gaallw~GqG~ylt~~st 132 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF---PNSYYLYFSSALLGFGAALLWTGQGGYLTSNST 132 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh---cchHHHHHHHHHhhhhHHheecccceehhhcCC
Confidence 66777788899999999999999999999999999887766544 577888899999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4738 160 PTERGKIGSFVFAGNQIGTVFSSFLSGFLLK 190 (1188)
Q Consensus 160 ~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~ 190 (1188)
+|++.+..++..+....+.++|..+-..+..
T Consensus 133 ~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~ 163 (461)
T KOG3098|consen 133 RETIERNISIFWAIGQSSLIIGGIILFIYFQ 163 (461)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHhheeeeE
Confidence 9999999999988888888887665554443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.013 Score=68.60 Aligned_cols=145 Identities=12% Similarity=0.046 Sum_probs=105.2
Q ss_pred ccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchh
Q psy4738 69 FDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFP 148 (1188)
Q Consensus 69 ~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p 148 (1188)
++-+.-..+.+.-+-.+-..+..+.+-+..+|..-+.=...+.+++.++-++.+++ +|.+.=++.=++.+++.|..-.
T Consensus 54 ~~c~~~~t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~--~~v~~~l~Gv~las~ssg~GE~ 131 (402)
T PF02487_consen 54 RDCKSVSTGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS--PSVWVRLLGVVLASLSSGLGEV 131 (402)
T ss_pred CCCCcccchHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec--cchhHHHHHHHHHhhhhhhhHH
Confidence 33344334555556666777777888888998875555556667788888888888 8999888888999999888888
Q ss_pred HHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccC
Q psy4738 149 ALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYND 221 (1188)
Q Consensus 149 ~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~ 221 (1188)
.-..+.. .+++ ..++.+.+|.+.+.++|...--.+.+ .+.+-|..+.+..++.++..+..++.++.+
T Consensus 132 tfL~lt~-~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~ 198 (402)
T PF02487_consen 132 TFLSLTH-FYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSP 198 (402)
T ss_pred HHHHHHH-hcCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 8888755 5654 35788899999999998877766665 234557788888777766666666665543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.80 E-value=9.6e-05 Score=66.06 Aligned_cols=80 Identities=19% Similarity=0.138 Sum_probs=73.6
Q ss_pred HHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccC
Q psy4738 23 AYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFG 102 (1188)
Q Consensus 23 ~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~G 102 (1188)
..+.|..+++.+|.|+ +|.++|.++.|++.|+.++||.++.+...++.++..
T Consensus 4 mGigRFayTplLP~M~----------------------------~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~ 55 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQ----------------------------ADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSR 55 (85)
T ss_pred hhhHHHHHHhHhHHHH----------------------------HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4567999999999999 789999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhccHHHH
Q psy4738 103 GKHTLGFGILSTAIFTLLTPFAARQSANWL 132 (1188)
Q Consensus 103 rk~vl~~~lll~~v~sll~a~a~~~s~~~l 132 (1188)
+++.+..+++...+.++++++. ++++..
T Consensus 56 ~~~~~~~~l~~~~~~~~~ma~~--~~~~~w 83 (85)
T PF06779_consen 56 PRRLLRAGLLLTVLSTAAMALT--HSFWLW 83 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hchHHH
Confidence 9999999999999999999998 776543
|
Note that many members are hypothetical proteins. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.024 Score=67.49 Aligned_cols=299 Identities=14% Similarity=0.111 Sum_probs=162.8
Q ss_pred HHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHh------hhc----cHH---HHHHHHHHHHhhhc-cchhHH
Q psy4738 85 WGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA------ARQ----SAN---WLIALRFFEGLGEG-TTFPAL 150 (1188)
Q Consensus 85 lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a------~~~----s~~---~lli~R~l~Glg~g-~~~p~~ 150 (1188)
+...+..+..|.+.||..|+++.-.++++--+.-.+++.. ... +-+ .+++.=.+.|.-+- +.....
T Consensus 49 ~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~ 128 (432)
T PF06963_consen 49 LSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANT 128 (432)
T ss_pred HHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456677788899999999999888776654433333221 001 011 12222222222111 112222
Q ss_pred HHHHhhcc------CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhc----cc
Q psy4738 151 NTLLAQWV------PPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLC----YN 220 (1188)
Q Consensus 151 ~~li~~~~------p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~----~~ 220 (1188)
.++=.||. +++++.+..+.+.-.=.+..+++|.+.|.+.+. .|.+..-.+.++..++....-+++. +.
T Consensus 129 iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~--~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~ 206 (432)
T PF06963_consen 129 IAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTF--ASPVIAAIFIAGWNLASVFVEYFLLARVYNS 206 (432)
T ss_pred heeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23335664 344566666777777788999999999999988 7888877777777766554433222 12
Q ss_pred CCCCCCCC-------C-HhH-------H----HHHHHHHhhhh---h---------hHHHHHHH---HHHHHHHHHHHHH
Q psy4738 221 DPASHPYI-------S-QRE-------K----EYLADTIGCLA---R---------NKIGHDWG---LFMISADLPKYMK 266 (1188)
Q Consensus 221 ~p~~~~~~-------~-~~~-------~----~~~~~~~~~~~---~---------~~~~~~~~---~~~~~~~lp~yl~ 266 (1188)
.|+-+.+. . +++ . +...+.+.... + ..+..... ..++-..+..|+.
T Consensus 207 ~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~TVLsf~~lmt~yl~ 286 (432)
T PF06963_consen 207 VPALAVKKRSSESESSSDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFTVLSFGGLMTAYLK 286 (432)
T ss_pred ChHhcCCCCCccccccccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 22211000 0 000 0 01111111110 0 11111111 2223345678888
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHH
Q psy4738 267 SVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCD-QILVVTLF 345 (1188)
Q Consensus 267 ~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~-~~~~~~~~ 345 (1188)
+. |++....|..-....+..+.+.+...++.+|+|..+. -.+....-......+...+...+++ .......+
T Consensus 287 ~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~------G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l 359 (432)
T PF06963_consen 287 SQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRA------GLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLL 359 (432)
T ss_pred HC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh------HHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHH
Confidence 75 9999999999999999999999999999999986432 1122222222222233223233322 22222222
Q ss_pred HHHHH-----HHhhhhhHHHHhhcccCchhhHHHHHHHHHHHhhhhhhhhHH
Q psy4738 346 TVGMA-----FMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYL 392 (1188)
Q Consensus 346 ~~~~~-----~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~l 392 (1188)
..+.. ..++-........+.+++++||+..|+-+...++...+.-.+
T Consensus 360 ~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 360 LGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred HHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 22222 233334444555566777999999999999998887655443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=97.74 E-value=9.8e-05 Score=86.52 Aligned_cols=146 Identities=12% Similarity=0.160 Sum_probs=126.9
Q ss_pred cccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhcccc
Q psy4738 572 YEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTT 651 (1188)
Q Consensus 572 ~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g~~ 651 (1188)
+|.+..+...|.+...-..+-...-+..++|.+|+|+-+++..++..+.+=-+.....+ +.|..+-..++||+.-+..
T Consensus 399 ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~--n~W~vLPieilqgit~ali 476 (618)
T KOG3762|consen 399 EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ--NPWMVLPIEILQGITHALI 476 (618)
T ss_pred hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc--CchheeeHHHHHHHHHHHH
Confidence 34445555566666677777778888889999999999999999999999888888888 7788999999999999999
Q ss_pred hhHHHHHHHhccCCCcchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHh
Q psy4738 652 FPAANQLLAAWIPKTERGKVGAFVWAG-IIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLF 721 (1188)
Q Consensus 652 ~p~~~~~i~~~~~~~~rg~~~g~~~~~-~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~ 721 (1188)
+.++.+|+++..||+-|..++++.+.. .++|-.+|.++||.+.+.++ =|..|.+.++.+++++++...
T Consensus 477 Waa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg--~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 477 WAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG--ARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh--hHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876 58999999999999999988 899999999988877655433
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00095 Score=79.10 Aligned_cols=108 Identities=13% Similarity=0.138 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhcccchhHHHHHHHhccC
Q psy4738 585 LGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIP 664 (1188)
Q Consensus 585 ~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~ 664 (1188)
.++-...++++.+..+.+.|+.|+|+.+.++...+....+..-+-+ .+.+++.-.+.|+|.|..+..--.++++..+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N---~y~~yfssallG~Gaallw~GqG~ylt~~st 132 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN---SYYLYFSSALLGFGAALLWTGQGGYLTSNST 132 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc---hHHHHHHHHHhhhhHHheecccceehhhcCC
Confidence 6777778889999999999999999999999999998888554332 4569999999999999999999999999999
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4738 665 KTERGKVGAFVWAGIIMGTVISSSLTGLLLK 695 (1188)
Q Consensus 665 ~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~ 695 (1188)
++.+.+..++..+....+..+|..+-..+..
T Consensus 133 ~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~ 163 (461)
T KOG3098|consen 133 RETIERNISIFWAIGQSSLIIGGIILFIYFQ 163 (461)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHhheeeeE
Confidence 9999999999999999888888776665543
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0031 Score=75.74 Aligned_cols=119 Identities=8% Similarity=-0.041 Sum_probs=90.4
Q ss_pred chhhhhHHHHHHHHHHHHH-HhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhh--cc--c-------------------
Q psy4738 577 DETTQGLILGSFYWGYVIM-HIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMA--AY--M------------------- 632 (1188)
Q Consensus 577 s~~~~~~i~s~~~l~~~~~-~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a--~~--~------------------- 632 (1188)
+.+++.|+-+...+..++. .++.+++++|++|++++......|...-++.++. ++ .
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 4478999999888877777 9999999999999999998888888777776655 11 0
Q ss_pred ------chhHHHHHHHHHHhhcccchh-HHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4738 633 ------GPVWLIVWRFFEGLGEGTTFP-AANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLK 695 (1188)
Q Consensus 633 ------~~~~l~~~R~l~Gig~g~~~p-~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~ 695 (1188)
+.|...+.=+..-+-...... .-.....|.++.+|-.|..++++.+.++|..+|+.+...+.+
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012222222333444344444 667889999999999999999999999999999999988874
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00018 Score=84.31 Aligned_cols=147 Identities=14% Similarity=0.236 Sum_probs=128.7
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccc
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTT 146 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~ 146 (1188)
+|.+-.+...|.....-..|-...-+.+++|.+|+|+-+++..++..+.+=-+..... +|.|+.+-.-++||+..+..
T Consensus 399 ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L--~n~W~vLPieilqgit~ali 476 (618)
T KOG3762|consen 399 EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL--QNPWMVLPIEILQGITHALI 476 (618)
T ss_pred hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh--cCchheeeHHHHHHHHHHHH
Confidence 3555555566666666677778888889999999999999999999999888888888 99999999999999999999
Q ss_pred hhHHHHHHhhccCCCchhhHHHHHHH-HHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhh
Q psy4738 147 FPALNTLLAQWVPPTERGKIGSFVFA-GNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL 217 (1188)
Q Consensus 147 ~p~~~~li~~~~p~~~Rg~~~gi~~~-~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~ 217 (1188)
+.++.+++++..||+-|..+.+++.. .-++|--+|.++||.+.+. +|=|..|.+.++.+++++++...+
T Consensus 477 Waa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~--fg~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 477 WAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER--FGARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred HHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee--ehhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999865 5578889999999999999 999999999999998887766544
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00038 Score=80.36 Aligned_cols=125 Identities=16% Similarity=0.134 Sum_probs=83.7
Q ss_pred cccCChhhHHHHHHHHHHHHHHhHhhHHHhhc----ccCchHHHHHHH-HHHHHHHHHHHHhhhccHH------------
Q psy4738 68 EFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQ----KFGGKHTLGFGI-LSTAIFTLLTPFAARQSAN------------ 130 (1188)
Q Consensus 68 ~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaD----r~Grk~vl~~~l-ll~~v~sll~a~a~~~s~~------------ 130 (1188)
++|+..+-.+.+--+-=+...+.||+.|..+| ||||||-++... +..+++-.+.++++ ++.
T Consensus 61 ~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aa--Dig~~lgd~~~~~~~ 138 (498)
T KOG0637|consen 61 SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAA--DIGLLLGDNERKPVK 138 (498)
T ss_pred HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHh--hhhHHhcCCcccccc
Confidence 34444433333333333345678999999999 589888776544 44556666777763 322
Q ss_pred -----HHHHHHHHHHhhhccchhHHHHHHhhccCCCchhh-HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhH
Q psy4738 131 -----WLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGK-IGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIF 200 (1188)
Q Consensus 131 -----~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~-~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F 200 (1188)
.+++.-.+.=+..-.....+.+++.|...++++.+ +.+++.....+|.++|..++++ .+|+-.|
T Consensus 139 ~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y------~~~~~~~ 208 (498)
T KOG0637|consen 139 PRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSY------LGLYKIF 208 (498)
T ss_pred hHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccc------cCceEEe
Confidence 23333333334445677888999999998887777 9999999999999999988873 4666554
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0016 Score=81.67 Aligned_cols=150 Identities=17% Similarity=0.262 Sum_probs=119.9
Q ss_pred cccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhh-hCChhHHHHHHHHHHHHHHHhhhhccc------chhHHHHHHHHH
Q psy4738 572 YEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQK-FGGKHTLGFGILSTAIFTILTPMAAYM------GPVWLIVWRFFE 644 (1188)
Q Consensus 572 ~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr-~Grr~~l~~~~~~~~i~~ll~a~a~~~------~~~~l~~~R~l~ 644 (1188)
+.+|.+.++...+...|....-+..++.|.++|+ +||++.++.+.++..++.++.+++... ....++++=.+.
T Consensus 16 ~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLi 95 (654)
T TIGR00926 16 NFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALI 95 (654)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHH
Confidence 3578888888889999999999999999999995 999999999999999998887764210 112356677888
Q ss_pred HhhcccchhHHHHHHHhccCCCc---chhHHHHHHHHHHHHHHHHHHHHHHhhhcC---C--CCchHHHHHHHHHHHHHH
Q psy4738 645 GLGEGTTFPAANQLLAAWIPKTE---RGKVGAFVWAGIIMGTVISSSLTGLLLKLT---N--NYWPVVFYLFGAVAILWF 716 (1188)
Q Consensus 645 Gig~g~~~p~~~~~i~~~~~~~~---rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~---g--~gWr~~F~i~~~~~~~~~ 716 (1188)
.+|.|+.-|+..+...|-+++++ |-+.+.++..+.++|+.+++.+...+.+.. | .+|...|.+.++..++..
T Consensus 96 a~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~ 175 (654)
T TIGR00926 96 ALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILAL 175 (654)
T ss_pred HhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHH
Confidence 99999999999999999997643 666788888889999999999999887442 1 249999999888777766
Q ss_pred HHHHh
Q psy4738 717 VVWLF 721 (1188)
Q Consensus 717 ~~~~~ 721 (1188)
+....
T Consensus 176 lvf~~ 180 (654)
T TIGR00926 176 IVFMA 180 (654)
T ss_pred HHHHH
Confidence 55433
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0045 Score=62.85 Aligned_cols=109 Identities=20% Similarity=0.286 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhc
Q psy4738 78 LILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQW 157 (1188)
Q Consensus 78 ~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~ 157 (1188)
.-.++....+.++.++...+.+++|.|+.+.++.+.+.+-.+.. +- ++.+.++..-++.|++.+..+++.-.++.+.
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~--~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~ 117 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FY--PNSYTLYPASALLGFGAALLWTAQGTYLTSY 117 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hh--hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence 44555666677888888899999999999999999998766543 33 6788999999999999999999999999999
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4738 158 VPPTERGKIGSFVFAGNQIGTVFSSFLSGFLL 189 (1188)
Q Consensus 158 ~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~ 189 (1188)
.++++|+|..++.......+.++|..+.-.+.
T Consensus 118 s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 118 STEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred CCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888877665543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.012 Score=63.00 Aligned_cols=134 Identities=19% Similarity=0.193 Sum_probs=81.8
Q ss_pred cccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhc-ccchhHHHHHHHHHHhhccc
Q psy4738 572 YEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAA-YMGPVWLIVWRFFEGLGEGT 650 (1188)
Q Consensus 572 ~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~-~~~~~~l~~~R~l~Gig~g~ 650 (1188)
+.++....|++.+.-.-.-...++..+.|.|+|+-|||+. ++.+++.-++|-... +-.+-.++++|++.|+..+-
T Consensus 65 stYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKra----cvtycitYiLsCiTKhSpqYkVLmVGR~LGGiaTsL 140 (454)
T KOG4332|consen 65 STYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRA----CVTYCITYILSCITKHSPQYKVLMVGRVLGGIATSL 140 (454)
T ss_pred hhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccc----eeeehHHHHHHHHhhcCCceEEEeehhhhhhHHHHH
Confidence 3455556666655544445666777888999999999995 455555555544332 22344599999999999998
Q ss_pred chhHHHH-HHHhccCCCcchhHHHHHHHHH----HHH----HHHHHHHHHHhhhcCCCCchHHHHHHHHH
Q psy4738 651 TFPAANQ-LLAAWIPKTERGKVGAFVWAGI----IMG----TVISSSLTGLLLKLTNNYWPVVFYLFGAV 711 (1188)
Q Consensus 651 ~~p~~~~-~i~~~~~~~~rg~~~g~~~~~~----~~G----~~~g~~l~g~l~~~~g~gWr~~F~i~~~~ 711 (1188)
.+.+--+ ++.|.- ++|+.-.-+....+ .+| .+++.+.|..+.+..+.|=-.+|-...++
T Consensus 141 LFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacf 208 (454)
T KOG4332|consen 141 LFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACF 208 (454)
T ss_pred HHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHH
Confidence 8877654 344443 44554443333222 233 35556666666776665555566554443
|
|
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0091 Score=64.00 Aligned_cols=299 Identities=15% Similarity=0.147 Sum_probs=153.8
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHh-hhccHHHHHHHHHHHHhhhcc
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA-ARQSANWLIALRFFEGLGEGT 145 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a-~~~s~~~lli~R~l~Glg~g~ 145 (1188)
+.++....|+|.+.-+=+-..++...+.|.|+|+-|||+. .+.+.+.-++|.+. ..+.+..+++.|++-|+..+.
T Consensus 65 stYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKra----cvtycitYiLsCiTKhSpqYkVLmVGR~LGGiaTsL 140 (454)
T KOG4332|consen 65 STYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRA----CVTYCITYILSCITKHSPQYKVLMVGRVLGGIATSL 140 (454)
T ss_pred hhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccc----eeeehHHHHHHHHhhcCCceEEEeehhhhhhHHHHH
Confidence 4567778888887776666777788899999999999995 34444444444443 226788999999999999998
Q ss_pred chhHHHHH-HhhccCCCchhhHHHHH--------HHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHh-
Q psy4738 146 TFPALNTL-LAQWVPPTERGKIGSFV--------FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWC- 215 (1188)
Q Consensus 146 ~~p~~~~l-i~~~~p~~~Rg~~~gi~--------~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~- 215 (1188)
.+.+--+. +.|.- |+|+.-.-+. ..+..+=.+++.+.+-.+.+..+.|--.+|-..+..-.+...+..
T Consensus 141 LFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~ 218 (454)
T KOG4332|consen 141 LFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILS 218 (454)
T ss_pred HHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHh
Confidence 88877664 55543 3443322221 233444456666677777777566777888655443333222211
Q ss_pred hh--cccCCCCCCCCCHhHHHHHHHHHhhhhh------hHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy4738 216 FL--CYNDPASHPYISQREKEYLADTIGCLAR------NKIGHDWGLFM-ISADLPKYMKSVMKFSIAKNGVLSSLPFLL 286 (1188)
Q Consensus 216 ~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~ 286 (1188)
-+ -+++|.+.+....+-+.. ...+....+ .+.......|+ +..|.|..-.+. ...--|.+++...+.
T Consensus 219 ~W~ENygdps~~kdlltqf~ga-a~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPaLspn~---e~iPhGfiFatFMlA 294 (454)
T KOG4332|consen 219 SWSENYGDPSENKDLLTQFKGA-ARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPND---EEIPHGFIFATFMLA 294 (454)
T ss_pred hhhhccCChhhhHHHHHHhhHh-HHHHhcchHHHHHHHHHHHHhhhhheeeeeecccCCCCc---ccCCchhHHHHHHHH
Confidence 11 112222222111100000 000100000 11111111121 223444321110 112247777777777
Q ss_pred HHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHH--HHHHHhh--c--chHHHHHHHHHHHHHHHhhhhhHHH
Q psy4738 287 MWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASG--VILASYA--G--CDQILVVTLFTVGMAFMGFFYPSLK 360 (1188)
Q Consensus 287 ~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~--l~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (1188)
..+|+-+..++..|-.. .+.... -+.++..... +.++... + ..+..-.+.++..-...|..+|...
T Consensus 295 SmLGSSla~Rl~s~s~~----~ve~ym----qivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSim 366 (454)
T KOG4332|consen 295 SMLGSSLASRLLSRSSP----KVESYM----QIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPSIM 366 (454)
T ss_pred HHHhhHHHHHHHhcCCc----ccchHH----HHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchHHH
Confidence 77776665555444322 222221 1222222221 1222221 1 1233445566666677777888777
Q ss_pred HhhcccCc-hhhHHHHHHHHHHHh
Q psy4738 361 VNALDLSP-NYAGTLMAIVNGIGA 383 (1188)
Q Consensus 361 ~~~~~~~p-~~~g~~~g~~~~~~~ 383 (1188)
-+-.++-| +.|++.+-..-.--+
T Consensus 367 kmRsqyIPEearstimNfFRvPLn 390 (454)
T KOG4332|consen 367 KMRSQYIPEEARSTIMNFFRVPLN 390 (454)
T ss_pred HHHHhhCCHHHHhhhhhheechhh
Confidence 77666656 667776655443333
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0042 Score=63.05 Aligned_cols=110 Identities=16% Similarity=0.246 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhcccchhHHHHHHHhc
Q psy4738 583 LILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAANQLLAAW 662 (1188)
Q Consensus 583 ~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g~~~p~~~~~i~~~ 662 (1188)
.-.++....+++..++.+.+.+++|+|+.+.++.+.+.+-.+.. +-+ +.+.++..-++.|++.+..+.+-..++.+.
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~--~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~ 117 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYP--NSYTLYPASALLGFGAALLWTAQGTYLTSY 117 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence 34556666677778888899999999999999999998776654 334 356799999999999999999999999999
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4738 663 IPKTERGKVGAFVWAGIIMGTVISSSLTGLLLK 695 (1188)
Q Consensus 663 ~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~ 695 (1188)
.++++|+|-.+++......+.++|.++...+.+
T Consensus 118 s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 118 STEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred CCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999888776654
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0016 Score=75.50 Aligned_cols=397 Identities=17% Similarity=0.120 Sum_probs=217.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHH
Q psy4738 246 NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPA 325 (1188)
Q Consensus 246 ~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~ 325 (1188)
..+..++++-.-..++|.|+++ .|.+.+-.+..-....+...+.+++.|..+||...|... ||.++..+.....
T Consensus 40 ia~Gvqf~wA~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GR-----RRPfI~~~s~~i~ 113 (498)
T KOG0637|consen 40 IAAGVQFGWALELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGR-----RRPFILAGSLLIA 113 (498)
T ss_pred HHHHHHHHHHHHhccccHHHHH-cCCCcccccccccccccccceeccccccccccccccccc-----ccchHHHhhHHHH
Confidence 4455566667777889999998 899888888887777888889999999999987655321 5666667666666
Q ss_pred HHHHHHHhhc--------ch----HHHHHHHHHHHHHHHhhhh----hHHHHhhcccC-chhhHH-HHHHHHHHHhhhhh
Q psy4738 326 SGVILASYAG--------CD----QILVVTLFTVGMAFMGFFY----PSLKVNALDLS-PNYAGT-LMAIVNGIGAISGI 387 (1188)
Q Consensus 326 ~~l~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-p~~~g~-~~g~~~~~~~lgg~ 387 (1188)
+.++++.+.. .. ....+.++++++...-+.. ...-+...|+. ++.+-+ +.+....+..+|+.
T Consensus 114 ~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnv 193 (498)
T KOG0637|consen 114 VSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNV 193 (498)
T ss_pred HHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcce
Confidence 6666554431 11 2245555555555444432 33345555654 344444 78888888888877
Q ss_pred hhhHHHHhhccCCCccchHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhHhhhhhccccchhhhHhhhccCCchHHHHH
Q psy4738 388 ISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSDYLVSKNIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVT 467 (1188)
Q Consensus 388 i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 467 (1188)
++=...+ ..|.+..++|.....+.+.+...-.... ..+.
T Consensus 194 LGY~~g~----y~~~~~~~~Ft~~~~~~~~C~~~~~~~~-------------------------------------~~v~ 232 (498)
T KOG0637|consen 194 LGYALGS----YLGLYKIFPFTLTTACDLYCANLKLCFF-------------------------------------LEVT 232 (498)
T ss_pred eeeeccc----ccCceEEeehHHHHHHHHHHHHHHHHHH-------------------------------------Hhhh
Confidence 6655554 3444444444444433333332211110 0000
Q ss_pred HHHHHHhhhcccccccceecc-cCCCcchh-------HHHHHHhhhhhccccccceeeeeeccCcccchhHHHHHHHHHH
Q psy4738 468 LFTVGMAFMGFFYPSLKVNAL-DLSPNYAG-------TLMAIVNGIGAISGIISPYLIGILVPNSTMLEWRLVFWISFGV 539 (1188)
Q Consensus 468 ~~~~~~~~~g~~~~~~~~~~~-~~~~~~~g-------~~~~~~~~~~~~~~~igp~i~~~l~~~~t~~~wr~vf~i~a~i 539 (1188)
+..+. .+...... |-+.+..+ ...+..+ .+-|.+. .-+++.|....+..+-
T Consensus 233 L~~i~--------~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~-----------e~fG~~~--~mpr~m~~L~i~~llt 291 (498)
T KOG0637|consen 233 LLLIE--------TSESLWYPQEKPLSPKGTTARSKSSKLPFLL-----------EIFGALK--VMPRPMRMLLIVTLLT 291 (498)
T ss_pred hhhee--------cccccccccccCCCCCcccccccccCcchHH-----------HHhchHh--hCChhHHHHHHHHHHH
Confidence 00000 00000000 11111110 0000000 0011111 1233433333333221
Q ss_pred --HHHhhhh-he-eeccccccccCCCCCCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHH
Q psy4738 540 --IMITNVA-YV-FMGSGKIQSWNEPRHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFG 615 (1188)
Q Consensus 540 --~l~~~l~-~l-~~~~~~~q~w~~~~~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~ 615 (1188)
....++. +. +.+++.-+. |.+.... .+-++.++-....-.|-...+.+...+.+...-++.||+|-|+.+..+
T Consensus 292 W~a~f~f~LF~TDfmG~~vy~G-Dp~a~~~--S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~ 368 (498)
T KOG0637|consen 292 WIAWFPFLLFDTDFMGREVYGG-DPKADEN--SEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGG 368 (498)
T ss_pred HHHHHHHHHHHHHhcchHhhCC-CCCCCcc--hhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeeh
Confidence 1112211 11 112211111 1111110 111222332233345666677778888899999999999988888888
Q ss_pred HHHHHHHHHHhhhhcccchhHHHHHHHHHHhhcccchhHHHHHHHhccCC-----------------------CcchhHH
Q psy4738 616 ILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPK-----------------------TERGKVG 672 (1188)
Q Consensus 616 ~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~~-----------------------~~rg~~~ 672 (1188)
...|+++..+.++.+ +.+....-|-..|+-.+.........++++... ..+|.-.
T Consensus 369 ~~~f~~~~~~~gl~~--~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~ 446 (498)
T KOG0637|consen 369 VNAFGLATGLAGLVL--NTYVVLSHRSTAGILSSPLLTVPYGALALYAILGIPLAITFSIPFALASIEIGNSGLGQGLDL 446 (498)
T ss_pred hHHHHHHHHHHhhhh--hHHHHHHHHhhcceeecchhcccHHHHHHHHHhCCccccccccccccccccccCccCCCCcee
Confidence 888999999999988 556688889999977777666666666554321 2357777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH
Q psy4738 673 AFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWF 716 (1188)
Q Consensus 673 g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~ 716 (1188)
|+.+....+.+++.....|.+.+..|. =+.+-+..+.+++...
T Consensus 447 gvln~~I~ipQvivs~~~Gp~~~~~G~-~~~~~~~~~a~s~~~~ 489 (498)
T KOG0637|consen 447 GVLNCAIVIPQVLVSLGLGPLDQLFGG-GNLPAFVSGAVALLIG 489 (498)
T ss_pred eeeeeeeeehhheeeccccchhhhcCC-cchhHHHHHHHHHHHH
Confidence 888888888888777777777776653 3444455555554443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.47 Score=56.63 Aligned_cols=119 Identities=15% Similarity=0.027 Sum_probs=84.4
Q ss_pred ccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhh---hhcc-----cchhHHHHHHHHH
Q psy4738 573 EFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTP---MAAY-----MGPVWLIVWRFFE 644 (1188)
Q Consensus 573 ~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a---~a~~-----~~~~~l~~~R~l~ 644 (1188)
.-|.++..+|..-+.-.+....+...+.++.+|+|..|.=.+++..-.+.-.+|. +++. .+...|+.+=++.
T Consensus 287 ~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~S 366 (432)
T PF06963_consen 287 SQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALS 366 (432)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHH
Confidence 3488999999999999999999999999999999999887776654332222222 2332 1222233332233
Q ss_pred HhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q psy4738 645 GLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTG 691 (1188)
Q Consensus 645 Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g 691 (1188)
=+|.=+.=.+..-++.|..|++|||...|.-++..++-..+-..++-
T Consensus 367 R~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~i 413 (432)
T PF06963_consen 367 RIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTI 413 (432)
T ss_pred HHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444556777889999999999999999999988888777766544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.002 Score=57.74 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=64.8
Q ss_pred CCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccc
Q psy4738 564 LLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMG 633 (1188)
Q Consensus 564 ~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~ 633 (1188)
++-.|.+++|.++|.++.+|+.+.-++||.+|.+...++.++..+|+.+..+++...+..+.|++.++..
T Consensus 12 TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~ 81 (85)
T PF06779_consen 12 TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFW 81 (85)
T ss_pred HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 3456899999999999999999999999999999999999999999999999999999999999998543
|
Note that many members are hypothetical proteins. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.067 Score=62.65 Aligned_cols=142 Identities=8% Similarity=0.000 Sum_probs=104.4
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhcccchhHHH
Q psy4738 577 DETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAAN 656 (1188)
Q Consensus 577 s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g~~~p~~~ 656 (1188)
+.--.+.+.-+-.+...+..+..-++.+|+..+.=...+.+++.++.++.++++ +.+.=+++=++.+++.|..-..-.
T Consensus 57 ~~~~t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~--~v~~~l~Gv~las~ssg~GE~tfL 134 (402)
T PF02487_consen 57 KSVSTGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSP--SVWVRLLGVVLASLSSGLGEVTFL 134 (402)
T ss_pred CcccchHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeecc--chhHHHHHHHHHhhhhhhhHHHHH
Confidence 333344555555566667777777888988766556777788888999999988 555577888888888888888888
Q ss_pred HHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhccCC
Q psy4738 657 QLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSE 726 (1188)
Q Consensus 657 ~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~~~ 726 (1188)
.+. ..|++ ...+-|.++.+.+.++|+..--.+.+ .+.+-|..+++..++.++..+..++++|++
T Consensus 135 ~lt-~~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~ 198 (402)
T PF02487_consen 135 SLT-HFYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSP 198 (402)
T ss_pred HHH-HhcCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 864 46664 35788999999999999988777776 563358888888887777666666676644
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3810|consensus | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.08 Score=59.44 Aligned_cols=309 Identities=17% Similarity=0.136 Sum_probs=181.0
Q ss_pred cccCChhhHH-HHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccc
Q psy4738 68 EFDWDEKTQG-LILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTT 146 (1188)
Q Consensus 68 ~~~~s~~~~g-~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~ 146 (1188)
+.|+++.|.. -+.-.....|.+.-.|.=.|.|-.=-|++++.-.+.....-.+.-+. ++.+.+=+.-+.-|...+.
T Consensus 35 ~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g--~sV~~mQvlE~FyG~~tAa- 111 (433)
T KOG3810|consen 35 DKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFG--PSVKAMQVLEFFYGPATAA- 111 (433)
T ss_pred CCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhc--CCchheeeehhhcChHHHH-
Confidence 4455555542 34456667788888899999998877888776655555555555666 8999999999999988665
Q ss_pred hhHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCC--
Q psy4738 147 FPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPAS-- 224 (1188)
Q Consensus 147 ~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~-- 224 (1188)
-.+-++++-...+|+++-++.|.--++.-.|-..|..++-.+......+.+..=++. .....+..++..+.|..+++
T Consensus 112 EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~IS-L~~~~ia~~~A~fLP~v~rSl~ 190 (433)
T KOG3810|consen 112 EIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYIS-LAEVTIAVLLALFLPRVKRSLY 190 (433)
T ss_pred HHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhh-HHHHHHHHHHHhhCCCCchhhh
Confidence 467788888899999999999999999999998888888888765212233332332 22233333444444443321
Q ss_pred -CC---CCC---------HhHHHH-HHHHHhhhh-------h---------hHHHHHHHHHHHHHHHHHHHHHHh-CCCH
Q psy4738 225 -HP---YIS---------QREKEY-LADTIGCLA-------R---------NKIGHDWGLFMISADLPKYMKSVM-KFSI 273 (1188)
Q Consensus 225 -~~---~~~---------~~~~~~-~~~~~~~~~-------~---------~~~~~~~~~~~~~~~lp~yl~~~~-g~s~ 273 (1188)
|+ +++ +++... +...+.... + -......+++-+..+.-..-+++. +-..
T Consensus 191 f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~ 270 (433)
T KOG3810|consen 191 FHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPAN 270 (433)
T ss_pred hhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchh
Confidence 00 000 011111 111111100 0 111222233444444433334432 2234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHh
Q psy4738 274 AKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMG 353 (1188)
Q Consensus 274 ~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (1188)
.-+|..-++..+.++++.+..|++.-.+.|. +.....++....+.+++......+ .++..+...+......
T Consensus 271 vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~--------g~~ll~~~s~~~agllf~m~~t~~-Iw~~Ya~yvlfr~~y~ 341 (433)
T KOG3810|consen 271 VYNGAVEAVSTLLGAIAALAAGYLNINWNRW--------GDLLLAVGSAVQAGLLFIMAQTQH-IWVCYAGYVLFRVIYQ 341 (433)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHheeeccchh--------hHHHHHHHHHHhhhhhhhhhcccc-eehhhhhHHHHHhhHh
Confidence 4578888888888889999888886555432 455566666666666655555443 3333333333222223
Q ss_pred h-hhhHHHHhhcccCchhhHHHHHHHHHHHhhhhhhh
Q psy4738 354 F-FYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIIS 389 (1188)
Q Consensus 354 ~-~~~~~~~~~~~~~p~~~g~~~g~~~~~~~lgg~i~ 389 (1188)
+ ..........++..+.-|...|++.+++-+-..+-
T Consensus 342 l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsil 378 (433)
T KOG3810|consen 342 LTITIATFQIARNLSSELFGLVFGINTFVALILQSIL 378 (433)
T ss_pred hhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhh
Confidence 3 23333455566777888888888877765554433
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.018 Score=51.09 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=43.1
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHH
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILST 114 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~ 114 (1188)
++.|.|+.|.|.+.++-.+...+++|++|.++||+++++.+.....++
T Consensus 28 ~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 28 KQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 678999999999999999999999999999999999999877655543
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=96.29 E-value=1.3 Score=50.77 Aligned_cols=351 Identities=12% Similarity=0.095 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhHh
Q psy4738 13 GFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHI 92 (1188)
Q Consensus 13 ~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~~ 92 (1188)
+.++.+-|.+...--...+ ++|-+- +.=|.|.++++.. |.-++-+. --+
T Consensus 33 illLl~LYllQGiP~GL~~-~iP~lL----------------------------~ak~vSyt~~a~f-S~ay~P~s-LKl 81 (510)
T KOG3574|consen 33 ILLLLFLYLLQGIPLGLIG-AIPLLL----------------------------QAKGVSYTSQAIF-SFAYWPFS-LKL 81 (510)
T ss_pred HHHHHHHHHHcCCchhHhh-hhHHHh----------------------------cCCCcchhhhhhh-hhhhhHHH-HHH
Confidence 3444455666666666666 788777 3445666666633 33333333 346
Q ss_pred hHHHhhc-----ccCchHHHH-HHHHHHHHHHHHHHHhhh---------ccHHHHHHHHHHHHhhhccchhHHHHHHhhc
Q psy4738 93 PGGLLAQ-----KFGGKHTLG-FGILSTAIFTLLTPFAAR---------QSANWLIALRFFEGLGEGTTFPALNTLLAQW 157 (1188)
Q Consensus 93 ~~G~LaD-----r~Grk~vl~-~~lll~~v~sll~a~a~~---------~s~~~lli~R~l~Glg~g~~~p~~~~li~~~ 157 (1188)
.|.++.| |+||||.-+ -+..+.+....+.+.-.. ++...+...-++.=+..+.==.+.-...-..
T Consensus 82 lWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtm 161 (510)
T KOG3574|consen 82 LWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTM 161 (510)
T ss_pred HHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHh
Confidence 8888888 999988533 333333333333332210 1222222222222333222222333334455
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh-----ccCCCCC--------hhH-HHHHHHHHHHHHHHhhhcccCCC
Q psy4738 158 VPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLK-----YTDGDWP--------EIF-YLFGILGVLWFVAWCFLCYNDPA 223 (1188)
Q Consensus 158 ~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~-----~~~~gWr--------~~F-~i~g~i~li~~il~~~~~~~~p~ 223 (1188)
-++++.|-+...-..+...|..++..+--.+-+ ..-.+|+ .-| ++-|.+.++...+..+.-+|.++
T Consensus 162 Ls~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~ 241 (510)
T KOG3574|consen 162 LSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDE 241 (510)
T ss_pred cCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 677887776655555555555544432222211 1013566 122 22344444444444455443333
Q ss_pred CCCCCCHhHHHHHH-------HHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q psy4738 224 SHPYISQREKEYLA-------DTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTA 291 (1188)
Q Consensus 224 ~~~~~~~~~~~~~~-------~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~ 291 (1188)
+ .++++...+. +.++.+.. .+...-.++.+--...+.-+.| .|++..+-++.. +......
T Consensus 242 ~---~~~e~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle-~Gv~ke~Lal~~----v~~~plq 313 (510)
T KOG3574|consen 242 S---VDEELELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE-HGVPKEELALIA----VPLVPLQ 313 (510)
T ss_pred h---hhhhhhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH-cCCChhHheeee----eehhhHH
Confidence 2 1121111111 11111111 1111122233333333444444 688877766554 3344444
Q ss_pred HHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHH-HHHhhcc-h---H-HHHHHHH---HHHHHHHhhhhhHHHHh
Q psy4738 292 IVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVI-LASYAGC-D---Q-ILVVTLF---TVGMAFMGFFYPSLKVN 362 (1188)
Q Consensus 292 ~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~-~~~~~~~-~---~-~~~~~~~---~~~~~~~~~~~~~~~~~ 362 (1188)
++.+....|+-.+..-.....|....-+........+. ....... . + ...+..+ .+...+...++-..++.
T Consensus 314 I~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf 393 (510)
T KOG3574|consen 314 IALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAF 393 (510)
T ss_pred HhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 55555554544322111111122222222222222222 2222222 1 1 1222222 12222222233344555
Q ss_pred hcccC-chhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCCc
Q psy4738 363 ALDLS-PNYAGTLMAIVNGIGAISGIISPYLIGILVPNNGV 402 (1188)
Q Consensus 363 ~~~~~-p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G~ 402 (1188)
...++ |..-|+-+.+.|+..++||--=..+..++.|.++.
T Consensus 394 ~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv 434 (510)
T KOG3574|consen 394 HAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTV 434 (510)
T ss_pred HhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCce
Confidence 55555 57799999999999999999999999999998764
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.023 Score=67.15 Aligned_cols=108 Identities=18% Similarity=0.213 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc-------HHHHHHHHHHHHhhhccchhHHHHHHhhccCCC---chhhHHHHHHHHH
Q psy4738 105 HTLGFGILSTAIFTLLTPFAARQS-------ANWLIALRFFEGLGEGTTFPALNTLLAQWVPPT---ERGKIGSFVFAGN 174 (1188)
Q Consensus 105 ~vl~~~lll~~v~sll~a~a~~~s-------~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~---~Rg~~~gi~~~~~ 174 (1188)
|.+..+.+++.+|.++..+++.+. .+.++++-.+.++|.|+.=|....+.+|.++++ +|.+...+++.+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 567778888888888866653332 257888999999999999999999999999876 4677888899999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHH
Q psy4738 175 QIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAW 214 (1188)
Q Consensus 175 ~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~ 214 (1188)
++|..+++.+.+++.++ .||.+.|.+.++..++..+..
T Consensus 82 n~G~~~~~~~~~~i~~~--~~~~~~f~i~~~~~~~~~~~f 119 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQN--YGWFLGFGIPAIGMLLALIVF 119 (372)
T ss_dssp HHHHHHHHHCCCHHHHC--S-HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhccc--cchhhhhhHHHHHHHHHHHHH
Confidence 99999999999999998 899999998877666544433
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.049 Score=48.30 Aligned_cols=58 Identities=22% Similarity=0.273 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy4738 247 KIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKD 305 (1188)
Q Consensus 247 ~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~ 305 (1188)
++....+...+..++|.|+++ .|+|..+.|.+.++..+...++.++.|+++||.++++
T Consensus 9 yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~ 66 (77)
T PF12832_consen 9 YFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRK 66 (77)
T ss_pred HHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccH
Confidence 455666777888899999997 9999999999999999999999999999999999864
|
|
| >KOG3810|consensus | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.06 Score=60.41 Aligned_cols=124 Identities=18% Similarity=0.204 Sum_probs=92.8
Q ss_pred cccCcchhhhh-HHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhccc
Q psy4738 572 YEFDWDETTQG-LILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGT 650 (1188)
Q Consensus 572 ~~~~~s~~~~~-~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g~ 650 (1188)
.|-+++..|.. -+.=.-.-+|.+...|.=.+.|..-.|++++.-.+.......+.-+.+ +.+.+=+.-+.-|...+.
T Consensus 34 p~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~--sV~~mQvlE~FyG~~tAa 111 (433)
T KOG3810|consen 34 PDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGP--SVKAMQVLEFFYGPATAA 111 (433)
T ss_pred CCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcC--CchheeeehhhcChHHHH
Confidence 34455555433 233344456677777777899999999998877776666666666777 677788888888888665
Q ss_pred chhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy4738 651 TFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTN 698 (1188)
Q Consensus 651 ~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g 698 (1188)
. .+-.+++-.-.+|+++-++.|..-+..-.|-..|..++-.+.+...
T Consensus 112 E-IAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~ 158 (433)
T KOG3810|consen 112 E-IAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLET 158 (433)
T ss_pred H-HhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcc
Confidence 5 4556777777899999999999999999999999988888877543
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.88 Score=56.07 Aligned_cols=144 Identities=17% Similarity=0.140 Sum_probs=92.1
Q ss_pred cccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHH----Hhhh--cc-HHHHHHHHHHHH
Q psy4738 68 EFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTP----FAAR--QS-ANWLIALRFFEG 140 (1188)
Q Consensus 68 ~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a----~a~~--~s-~~~lli~R~l~G 140 (1188)
-+|-+..+.+.+++.|+.|.+++...+|++.++--++... .-+.+ ++...++. .+.. .. ...++..-++.|
T Consensus 44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~-~e~~i-~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 121 (521)
T PRK03612 44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVA-VELLL-ALLGGLSALILYAAFAFQGLSRLLLYVLVLLIG 121 (521)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888899999999999999999999887443333221 11111 11111111 1100 11 122344556778
Q ss_pred hhhccchhHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh-ccCCCCChhHHHHHHHHHHHHHHHhh
Q psy4738 141 LGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLK-YTDGDWPEIFYLFGILGVLWFVAWCF 216 (1188)
Q Consensus 141 lg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~-~~~~gWr~~F~i~g~i~li~~il~~~ 216 (1188)
+..|+.+|....+..+.. .++-++..|-++....+|.++|.++.+++.- . .|=....++.+.+.++.+++..+
T Consensus 122 ~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~--lG~~~t~~~~a~l~~~~a~~~~~ 195 (521)
T PRK03612 122 LLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPR--LGLIRTAALTGSLNLLAALVFLW 195 (521)
T ss_pred HHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHH
Confidence 888888999888776643 2345677888999999999999999888764 4 56555556666666665544433
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.14 Score=60.34 Aligned_cols=108 Identities=17% Similarity=0.215 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhc-------ccchhHHHHHHHHHHhhcccchhHHHHHHHhccCCC---cchhHHHHHHHHH
Q psy4738 610 HTLGFGILSTAIFTILTPMAA-------YMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKT---ERGKVGAFVWAGI 679 (1188)
Q Consensus 610 ~~l~~~~~~~~i~~ll~a~a~-------~~~~~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~~~---~rg~~~g~~~~~~ 679 (1188)
|.+.++.++..+|.++..++. +.+.+.++++-++.++|.|+.=|......+|-++++ +|.+.+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 566778888888888744332 112356899999999999999999999999999765 4666778889999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHH
Q psy4738 680 IMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVW 719 (1188)
Q Consensus 680 ~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~ 719 (1188)
++|..+++.+.+++.+..+ |.+.|.+.++..++..+..
T Consensus 82 n~G~~~~~~~~~~i~~~~~--~~~~f~i~~~~~~~~~~~f 119 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYG--WFLGFGIPAIGMLLALIVF 119 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS---HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhccccc--hhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999888 9999999887766655443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.43 Score=52.10 Aligned_cols=58 Identities=16% Similarity=0.264 Sum_probs=37.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHH--H-HhhhccCCCCChhHHHHHHHHHHHHHHHhhhc
Q psy4738 161 TERGKIGSFVFAGNQIGTVFSSFLS--G-FLLKYTDGDWPEIFYLFGILGVLWFVAWCFLC 218 (1188)
Q Consensus 161 ~~Rg~~~gi~~~~~~lG~~ig~~lg--g-~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~ 218 (1188)
++|+..+.+-..+.++|.++.-..- + -..+...-.|++++-+.+++.++-.++...+-
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifG 62 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFG 62 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677777777778888887654331 1 11111113699999999988877776666653
|
|
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.85 Score=56.58 Aligned_cols=145 Identities=19% Similarity=0.224 Sum_probs=113.5
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhccc-CchHHHHHHHHHHHHHHHHHHHhhh-c-----------------
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKF-GGKHTLGFGILSTAIFTLLTPFAAR-Q----------------- 127 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~-Grk~vl~~~lll~~v~sll~a~a~~-~----------------- 127 (1188)
.++|.+..+..-.++.|.-......+.+++++|-| ||-+.+.++.++..++..+.++.+. +
T Consensus 66 ~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~ 145 (571)
T KOG1237|consen 66 LELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCE 145 (571)
T ss_pred HHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCccc
Confidence 57777778888888888888888889999999987 7888888888888777554443310 0
Q ss_pred --c---HHHHHHHHHHHHhhhccchhHHHHHHhhccC---CCc-h--hhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q psy4738 128 --S---ANWLIALRFFEGLGEGTTFPALNTLLAQWVP---PTE-R--GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDW 196 (1188)
Q Consensus 128 --s---~~~lli~R~l~Glg~g~~~p~~~~li~~~~p---~~~-R--g~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gW 196 (1188)
+ ...+....-+..+|.|+.-|...+.-+|.++ +++ + ...+.+++...+.|..++..+--++.++ .||
T Consensus 146 ~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~--~~w 223 (571)
T KOG1237|consen 146 SPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDN--VGW 223 (571)
T ss_pred CcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhc--ccc
Confidence 1 1356667777788999999999999999998 322 2 3688899999999999999999999888 899
Q ss_pred ChhHHHHHHHHHHHHHH
Q psy4738 197 PEIFYLFGILGVLWFVA 213 (1188)
Q Consensus 197 r~~F~i~g~i~li~~il 213 (1188)
.+.|-+..+...+..++
T Consensus 224 ~lgf~i~~~~~~lai~i 240 (571)
T KOG1237|consen 224 KLGFGIPTVLNALAILI 240 (571)
T ss_pred eeeccHHHHHHHHHHHH
Confidence 99998876665554433
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=4.1 Score=50.30 Aligned_cols=140 Identities=15% Similarity=0.172 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHH---HH
Q psy4738 256 MISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVIL---AS 332 (1188)
Q Consensus 256 ~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~---~~ 332 (1188)
..-.....++...+|-+....+.+.+....+..+|+.+++++.++..++ ....-..++.++.....+. ..
T Consensus 32 ~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~-------~~~~e~~i~l~~~~~~~ll~~~~~ 104 (521)
T PRK03612 32 VYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAG-------FVAVELLLALLGGLSALILYAAFA 104 (521)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445556666888888999999999999999999888776332211 0111111222211111111 11
Q ss_pred hhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCchhhHHHHHHHHHHHhhhhhhhhHHHHhhcc-CCCc
Q psy4738 333 YAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVP-NNGV 402 (1188)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~-~~G~ 402 (1188)
+.............+..+..|...|...-...+...+..|...|-.+....+|+.+|+.+.+.++- ..|.
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~ 175 (521)
T PRK03612 105 FQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGL 175 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcch
Confidence 110111112222333345566666666655555444456778888999999999999999987654 5664
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=92.63 E-value=24 Score=42.57 Aligned_cols=101 Identities=15% Similarity=0.058 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhHhhHHH----hhcccCchHHHHHHHHHHHHH-HHHHHHhh-----hccHHHHHHHHHHHHhhhccchh
Q psy4738 79 ILSAFYWGYVIMHIPGGL----LAQKFGGKHTLGFGILSTAIF-TLLTPFAA-----RQSANWLIALRFFEGLGEGTTFP 148 (1188)
Q Consensus 79 l~s~~~lg~~i~~~~~G~----LaDr~Grk~vl~~~lll~~v~-sll~a~a~-----~~s~~~lli~R~l~Glg~g~~~p 148 (1188)
..+.+.+...+.+++... +..|+..|.=+..++++..+. .+...+.. ...++..++.=++.|++.+....
T Consensus 46 ~~~~~~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~ 125 (437)
T TIGR00939 46 FNTYYTLASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQG 125 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcc
Confidence 455555555555555544 445566433333343322222 22111111 02466667777888999888888
Q ss_pred HHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHH
Q psy4738 149 ALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFL 184 (1188)
Q Consensus 149 ~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~l 184 (1188)
..+++.+. +|++ .++.+..|.+++.+++.++
T Consensus 126 s~~gla~~-fp~~----~~~a~~~G~g~aGv~~s~~ 156 (437)
T TIGR00939 126 SLFGLAGV-FPST----YSSAVMSGQGLAGVLTSLA 156 (437)
T ss_pred cchhhccc-CCHH----HHHHHHhcchhHHHHHHHH
Confidence 88888774 6643 4556666666666665444
|
|
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=92.35 E-value=8.7 Score=47.86 Aligned_cols=147 Identities=14% Similarity=0.138 Sum_probs=111.1
Q ss_pred cccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhh-hCChhHHHHHHHHHHHHHHHhhhhcc---------------
Q psy4738 568 ESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQK-FGGKHTLGFGILSTAIFTILTPMAAY--------------- 631 (1188)
Q Consensus 568 ~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr-~Grr~~l~~~~~~~~i~~ll~a~a~~--------------- 631 (1188)
.-+.++++.+.....-.++.|.-......+..+.++|- +||-+.+.++.++..++..+..++..
T Consensus 62 ~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~ 141 (571)
T KOG1237|consen 62 TYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGG 141 (571)
T ss_pred HHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCC
Confidence 34456788888888888999998889999999999995 68888888888777777443221110
Q ss_pred -----cc---hhHHHHHHHHHHhhcccchhHHHHHHHhccC---CC-cch--hHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy4738 632 -----MG---PVWLIVWRFFEGLGEGTTFPAANQLLAAWIP---KT-ERG--KVGAFVWAGIIMGTVISSSLTGLLLKLT 697 (1188)
Q Consensus 632 -----~~---~~~l~~~R~l~Gig~g~~~p~~~~~i~~~~~---~~-~rg--~~~g~~~~~~~~G~~~g~~l~g~l~~~~ 697 (1188)
.+ ...++...-+..+|.|+.-|.....=+|=++ ++ ++. .-+.++....+.|..++..+--++-+..
T Consensus 142 ~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~ 221 (571)
T KOG1237|consen 142 NVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNV 221 (571)
T ss_pred CcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 01 1356777788889999999999999999998 32 233 5677888888999999988888887777
Q ss_pred CCCchHHHHHHHHHHHHHH
Q psy4738 698 NNYWPVVFYLFGAVAILWF 716 (1188)
Q Consensus 698 g~gWr~~F~i~~~~~~~~~ 716 (1188)
+ |.+-|.+....-.+..
T Consensus 222 ~--w~lgf~i~~~~~~lai 238 (571)
T KOG1237|consen 222 G--WKLGFGIPTVLNALAI 238 (571)
T ss_pred c--ceeeccHHHHHHHHHH
Confidence 7 9999988766554433
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=91.22 E-value=14 Score=45.18 Aligned_cols=119 Identities=13% Similarity=0.028 Sum_probs=80.8
Q ss_pred chhhhhHHHHHHHH-HHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhh--cccc------hh---HHHHHHHHH
Q psy4738 577 DETTQGLILGSFYW-GYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMA--AYMG------PV---WLIVWRFFE 644 (1188)
Q Consensus 577 s~~~~~~i~s~~~l-~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a--~~~~------~~---~l~~~R~l~ 644 (1188)
+++.+..+=....+ +..+......+++++++|++++-+.+..|...-.+.++. |+.. .+ +-...+.+.
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 55666776665555 445667889999999999999988887777766666643 1110 00 001111122
Q ss_pred H------------------hhcccchh-HHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4738 645 G------------------LGEGTTFP-AANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLK 695 (1188)
Q Consensus 645 G------------------ig~g~~~p-~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~ 695 (1188)
| +-.....+ .-....-|.++.+|-.|..++++.+.++|.++++.+...+.+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22222222 346677888999999999999999999999999999998887
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=88.01 E-value=6.7 Score=43.09 Aligned_cols=58 Identities=16% Similarity=0.317 Sum_probs=37.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHh---hhcCCCCchHHHHHHHHHHHHHHHHHHhhc
Q psy4738 666 TERGKVGAFVWAGIIMGTVISSSLTGLL---LKLTNNYWPVVFYLFGAVAILWFVVWLFIG 723 (1188)
Q Consensus 666 ~~rg~~~g~~~~~~~~G~~~g~~l~g~l---~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~ 723 (1188)
++|++...+-.-++++|.++.-..--.- .+.....||+++-+.+.+.++-+++..++-
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifG 62 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFG 62 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5666666666677788877655442111 111112399999999998888777776663
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=87.98 E-value=70 Score=38.61 Aligned_cols=112 Identities=13% Similarity=0.047 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhCCh--hHHHH--HHHHHHHHHHHhhhhcc-------cchhHHHHHHHHHHhhcccc
Q psy4738 583 LILGSFYWGYVIMHIPGGLLAQKFGGK--HTLGF--GILSTAIFTILTPMAAY-------MGPVWLIVWRFFEGLGEGTT 651 (1188)
Q Consensus 583 ~i~s~~~l~~~~~~~~~G~L~Dr~Grr--~~l~~--~~~~~~i~~ll~a~a~~-------~~~~~l~~~R~l~Gig~g~~ 651 (1188)
.+...|.++=.+|-.+..+.. .-++| +++.. +=+++.-.-++|..-+. .+-+..++.-++.|+..|-.
T Consensus 311 i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~ 389 (437)
T TIGR00939 311 ICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYL 389 (437)
T ss_pred HHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHH
Confidence 445566666666665443321 11223 33332 22344444455543310 13456788899999999999
Q ss_pred hhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4738 652 FPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLK 695 (1188)
Q Consensus 652 ~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~ 695 (1188)
...++.+..+..+++||-.+..+......+|-..|..++-.+..
T Consensus 390 ~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~~~ 433 (437)
T TIGR00939 390 GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLFVA 433 (437)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888765543
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.85 E-value=17 Score=43.48 Aligned_cols=155 Identities=12% Similarity=-0.001 Sum_probs=101.0
Q ss_pred chhhhhHHHHHHHH-HHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhc--ccc--hhHHHHHHHHHHhhc---
Q psy4738 577 DETTQGLILGSFYW-GYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAA--YMG--PVWLIVWRFFEGLGE--- 648 (1188)
Q Consensus 577 s~~~~~~i~s~~~l-~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~--~~~--~~~l~~~R~l~Gig~--- 648 (1188)
+++.+.++=+.+.+ +..+..++.+++.+++.|++++-.-+..|...-+++|+.- +-. ..-....|=+++..=
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 46678888888888 7778999999999999999999998888888888887642 000 001223333332221
Q ss_pred -----------------------ccchh-HHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-----
Q psy4738 649 -----------------------GTTFP-AANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNN----- 699 (1188)
Q Consensus 649 -----------------------g~~~p-~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~----- 699 (1188)
+.... .-....-|.++.+|-.|.+++++.+.+++..++..+..++.+..+.
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~ 218 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEF 218 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHH
Confidence 11111 1223345667778889999999999999999999988888874320
Q ss_pred ---CchHHHHHHHHHHHHHHHHHHhhccCCCCCCc
Q psy4738 700 ---YWPVVFYLFGAVAILWFVVWLFIGYSEPGSNP 731 (1188)
Q Consensus 700 ---gWr~~F~i~~~~~~~~~~~~~~~~~~~pe~~~ 731 (1188)
.-+..|.+.+..+++...+..++=+..++.|+
T Consensus 219 ~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~ 253 (509)
T COG3202 219 KDLLLQILFIVIVILGIIAILLYRYINRNVLTDPL 253 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Confidence 13445555555555555555555333444444
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=84.36 E-value=27 Score=40.49 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=28.0
Q ss_pred cccCCC-CcchhHHHHHhhhhhhhhhhhhhhhheeecC
Q psy4738 1091 NSLDLS-PNYAATLMAIVNGLGAVSGIFSAPLIGIMTP 1127 (1188)
Q Consensus 1091 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 1127 (1188)
..+.++ |.--|+=+.+.|+..|+|+-.-..++..+.|
T Consensus 393 f~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D 430 (510)
T KOG3574|consen 393 FHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLAD 430 (510)
T ss_pred HHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcc
Confidence 333444 5668999999999999999877777666665
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=83.81 E-value=1.2e+02 Score=37.27 Aligned_cols=119 Identities=13% Similarity=0.081 Sum_probs=80.7
Q ss_pred ChhhHHHHHHHHHH-HHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhh-------ccH--------------
Q psy4738 72 DEKTQGLILSAFYW-GYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR-------QSA-------------- 129 (1188)
Q Consensus 72 s~~~~g~l~s~~~l-g~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~-------~s~-------------- 129 (1188)
+++....+=....+ +..+......+++||+++.+++-..+..+...-.+.++... ++.
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 56666666664444 55666788999999999999988777776665555554311 111
Q ss_pred --------HHHHHHHHHHHhhhccchh-HHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4738 130 --------NWLIALRFFEGLGEGTTFP-ALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLK 190 (1188)
Q Consensus 130 --------~~lli~R~l~Glg~g~~~p-~~~~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~ 190 (1188)
|.+.+.=+..-+-...... .-.....|.++.+|-.|..+.+..+.++|.+++..+..++.+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111222222223333 246778899999999999999999999999999999999988
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 7e-48
Identities = 69/451 (15%), Positives = 132/451 (29%), Gaps = 67/451 (14%)
Query: 9 RYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNE 68
R+ + F A Y +R +LA+ +V E
Sbjct: 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-----------------------------E 56
Query: 69 FDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA--AR 126
+ G LS Y G ++ + + L G++ A L F A
Sbjct: 57 QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT 116
Query: 127 QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSG 186
S + L F G +G +P + W ERG I S + +G L
Sbjct: 117 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 176
Query: 187 FLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLARN 246
+ + + W Y+ +L + + + P S E +
Sbjct: 177 LGMAWFND-WHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAE 235
Query: 247 KIGHDW------------------GLFMISAD-------LPKYMKSVMKFSIAKNGVLSS 281
+ + P Y+K V F++ K+
Sbjct: 236 QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYF 295
Query: 282 LPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILV 341
L ++ GW SD + + T + + + ++ + +
Sbjct: 296 LYEYAGIPGTLLCGWMSDKVFRGN-RGATGVFFMTLVTIAT-----IVYWMNPAGNPTVD 349
Query: 342 VTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGTLMAIVNGIGAISG-IISPYLIGILVPN 399
+ V + + ++AL+L+P AGT G + G + + ++G V
Sbjct: 350 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 409
Query: 400 NGVLSSLPFLLMWLTAIVAGWFSDYLVSKNI 430
G F++M +I+A ++
Sbjct: 410 FG--WDGGFMVMIGGSILAVILLIVVMIGEK 438
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 9e-28
Identities = 45/348 (12%), Positives = 89/348 (25%), Gaps = 60/348 (17%)
Query: 573 EFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYM 632
E + G L Y G ++ + + L G++ A + +
Sbjct: 56 EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA 115
Query: 633 --GPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLT 690
+ V F G +G +P + + W + ERG + + +G I L
Sbjct: 116 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175
Query: 691 GLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFISQKEMDYLEETIGSLTR 750
L + N+ W Y+ AIL + + P S +E +
Sbjct: 176 LLGMAWFND-WHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKA 234
Query: 751 RKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTPWKEMATSW 810
+E+ + + +
Sbjct: 235 E----------------------QELTAKQI--------------------FMQYVLPNK 252
Query: 811 PVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSA--TSMGPAVGIILASYSG---- 864
+ + I V + I P Y V HF++ + I +
Sbjct: 253 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMS 312
Query: 865 -----CNKVLAVMFFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIV 907
N+ +FF + Y + + M ++
Sbjct: 313 DKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV----DMICMIVI 356
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 3e-09
Identities = 26/173 (15%), Positives = 57/173 (32%), Gaps = 14/173 (8%)
Query: 401 GVLSSLPFLLMWLTAIVAGWFSDYLVSKNIFSVTVIRKIFTTIASVGPASGVILASYAGC 460
L ++ GW SD + N T + + + ++
Sbjct: 291 SWAYFLYEYAGIPGTLLCGWMSDKVFRGN-RGATGVFFMTLVTIAT-----IVYWMNPAG 344
Query: 461 DQILVVTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGTLMAIVNGIGAISG-IISPYLIG 518
+ + + V + + ++AL+L+P AGT G + G + + ++G
Sbjct: 345 NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG 404
Query: 519 ILVPNSTMLEWRLVFWISFGVIMITNVAYVFMGSGKIQSWNEPRHLLPEESQQ 571
V W F + G ++ + + + G+ + LL E +
Sbjct: 405 YTV---DFFGWDGGFMVMIGGSILAVILLIVVMIGEKR---RHEQLLQELVPR 451
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 29/201 (14%), Positives = 53/201 (26%), Gaps = 13/201 (6%)
Query: 967 PWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYF--------ASNGLLSALPFLFMWI 1018
+ + + + + I V + I P Y + L
Sbjct: 244 FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIP 303
Query: 1019 FSQGAGCLSDFIVERQWFSMTLTRKIFATAASMGPAVGIILASYSGCNKVLAVMFFAIGM 1078
+ G +SD + T + + A + + +G V + IG
Sbjct: 304 GTLLCGWMSDKVFRGNR-GATGVFFMTL----VTIATIVYWMNPAGNPTVDMICMIVIGF 358
Query: 1079 GFMGFYYPSIRINSLDLSPNYAATLMAIVNGLGAVSGIFSAPLIGIMTPNSTMSEWRLVF 1138
G A T G + G +A I T + + +
Sbjct: 359 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV 418
Query: 1139 WLTFIILAVTNLFYLVFGSAE 1159
+ ILAV L ++ G
Sbjct: 419 MIGGSILAVILLIVVMIGEKR 439
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 3e-09
Identities = 55/355 (15%), Positives = 109/355 (30%), Gaps = 32/355 (9%)
Query: 78 LILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRF 137
++ A+ Y + + G ++ + G + + G+ + TL+ S LIA
Sbjct: 39 SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--SSLTVLIAASA 96
Query: 138 FEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWP 197
+G+G G TL T+ S + G + + + + G L + W
Sbjct: 97 MQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN--WR 154
Query: 198 EIFYLFGILGVL-WFVAWCFLCYNDPASHPYISQREKEYLADTIGCLARNK--IGHDW-- 252
+ +L F ++ P + P + L + L N +
Sbjct: 155 ACYLFLLVLCAGVTFSMARWM----PETRP--VDAPRTRLLTSYKTLFGNSGFNCYLLML 208
Query: 253 -----GLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIF 307
G+ A M +V+ S +L F+L A WF+ +
Sbjct: 209 IGGLAGIAAFEACSGVLMGAVLGLSSMTVSIL----FILPIPAAFFGAWFAGRPNKR--- 261
Query: 308 SVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLS 367
+ + + I + + ++ + G +P A++
Sbjct: 262 -FSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPF 320
Query: 368 PNYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFS 422
P AGT A+V G+ I + L +L L+ +
Sbjct: 321 PFLAGTAGALVGGLQNIGSGVLASLSAMLPQT----GQGSLGLLMTLMGLLIVLC 371
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 48/324 (14%), Positives = 96/324 (29%), Gaps = 37/324 (11%)
Query: 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLL-TPFAA 125
F GLI SAFY+GY I+ IP G+L +K K + G+ A+ L P A
Sbjct: 54 QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE 113
Query: 126 RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLS 185
+ + F G G A N + P + + N G + +
Sbjct: 114 IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG 173
Query: 186 GFLL---------------------KYTDGDWPEIFYLFGILGVLWFVAWCFLCYND--P 222
L+ Y + + I+ + + +
Sbjct: 174 QSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPA 233
Query: 223 ASHPYISQREKEYLADTIGCLARNK--IGHDWGLF-------MISADLPKYMKS-VMKFS 272
S ++ + ++ LAR + F + L +Y + +
Sbjct: 234 LQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMT 293
Query: 273 IAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKD---IFSVTVIRKIFTTIASVGPASGVI 329
+ + ++ W +++ + + + G +
Sbjct: 294 AGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA 353
Query: 330 LASYAGCDQILVVTLFTVGMAFMG 353
L + I T+F++G+ +G
Sbjct: 354 LTLCSAFMSIQYPTIFSLGIKNLG 377
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1188 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.96 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.96 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.95 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.95 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.95 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.94 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.93 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.93 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.89 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.88 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.86 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.85 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=319.51 Aligned_cols=375 Identities=18% Similarity=0.186 Sum_probs=293.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHH
Q psy4738 8 QRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGY 87 (1188)
Q Consensus 8 ~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~ 87 (1188)
.++.....++++.+..++++..+++.+|.+. +|+ .|..+.+++.+++.+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~-~s~~~~g~~~~~~~~~~ 75 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLV----------------------------EQG-FSRGDLGFALSGISIAY 75 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT----------------------------SST-TCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHh-ccHhHHHHHHHHHHHHH
Confidence 4567788888999999999999999999998 678 99999999999999999
Q ss_pred HHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHH----hhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCch
Q psy4738 88 VIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF----AARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTER 163 (1188)
Q Consensus 88 ~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~----a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~R 163 (1188)
.++++++|+++||+|||+++..+.++++++++++++ + +|++.++++|+++|++.+...|+..+++.|++|+++|
T Consensus 76 ~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r 153 (451)
T 1pw4_A 76 GFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKER 153 (451)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHH
T ss_pred HHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcc--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhh
Confidence 999999999999999999999999999999999999 8 8999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccCCC-CChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHhH----------
Q psy4738 164 GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGD-WPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQRE---------- 232 (1188)
Q Consensus 164 g~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~g-Wr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~~---------- 232 (1188)
++++++...+..+|.+++|++++.+.+. .| ||++|++.++++++..++.++..||+|++++..++++
T Consensus 154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~--~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (451)
T 1pw4_A 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAW--FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYN 231 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHH--TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccch
Confidence 9999999999999999999999998888 88 9999999999998888877777888766432111100
Q ss_pred -----HHH-----HHHHHhhhh-----hhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 233 -----KEY-----LADTIGCLA-----RNKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWF 297 (1188)
Q Consensus 233 -----~~~-----~~~~~~~~~-----~~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~l 297 (1188)
+.. ..+..+... ...+......+....++|.|+++.+|++..+.+...+...++..++.++.+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 311 (451)
T 1pw4_A 232 EKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 311 (451)
T ss_dssp -------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000011110 14445556677888999999999899999999999999999999999999999
Q ss_pred HHHH--hccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhhhhHHHHhhcccCc-hhhHH
Q psy4738 298 SDYL--VSKDIFSVTVIRKIFTTIASVGPASGVILASYAGC-DQILVVTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGT 373 (1188)
Q Consensus 298 sdr~--~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~ 373 (1188)
.||+ ++| +.......+...++++....... +.........+...+.+...+.......+..| +.||+
T Consensus 312 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 382 (451)
T 1pw4_A 312 SDKVFRGNR---------GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGT 382 (451)
T ss_dssp HHHTSTTCH---------HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHhcCCc---------hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhh
Confidence 9998 653 33333333333244444444332 33333333333333444444554555555555 78999
Q ss_pred HHHHHHHHHhh-hhhhhhHHHHhhccCCCccchHHHHHHHHHHHHHHHHHhhhh
Q psy4738 374 LMAIVNGIGAI-SGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSDYLV 426 (1188)
Q Consensus 374 ~~g~~~~~~~l-gg~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (1188)
+.|+.+...++ ++.++|.+.|.+.|..| +...+...+++.+++.+......
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 383 AAGFTGLFGYLGGSVAASAIVGYTVDFFG--WDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSC--SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999987 34455555555555555544443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=301.46 Aligned_cols=350 Identities=14% Similarity=0.129 Sum_probs=274.7
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHH
Q psy4738 7 SQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWG 86 (1188)
Q Consensus 7 ~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg 86 (1188)
++++....+++++++...+++...++.+|.+. +++|+|..+.+++.+.+.++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~g~s~~~~g~~~~~~~~~ 73 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQ----------------------------QAFTLTNFQAGLIQSAFYFG 73 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHSCCCSHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----------------------------HHcCCCHHHHHHHHHHHHHH
Confidence 34566777788889999999999999999998 78999999999999999999
Q ss_pred HHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHH---HHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCch
Q psy4738 87 YVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLT---PFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTER 163 (1188)
Q Consensus 87 ~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~---a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~R 163 (1188)
+.++++++|+++||+|||+++..+.++++++++++ +++ ++++.+++.|+++|++.+...|...+++.|++|+|+|
T Consensus 74 ~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r 151 (438)
T 3o7q_A 74 YFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSG 151 (438)
T ss_dssp HHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTH
T ss_pred HHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc--ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhH
Confidence 99999999999999999999999999999999999 777 9999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh-hccCCC-------------------------CChhHHHHHHHHHHHHHHHhhh
Q psy4738 164 GKIGSFVFAGNQIGTVFSSFLSGFLL-KYTDGD-------------------------WPEIFYLFGILGVLWFVAWCFL 217 (1188)
Q Consensus 164 g~~~gi~~~~~~lG~~ig~~lgg~l~-~~~~~g-------------------------Wr~~F~i~g~i~li~~il~~~~ 217 (1188)
++++++.+.+..+|.+++|++++.+. +. .+ ||+.|++.+.+.++..+++++.
T Consensus 152 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 229 (438)
T 3o7q_A 152 HFRLNLAQTFNSFGAIIAVVFGQSLILSN--VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT 229 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHTS--SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 55 44 9999998888777766655443
Q ss_pred -cccCCCCCCC--CCHhHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHH
Q psy4738 218 -CYNDPASHPY--ISQREKEYLADTIGCLAR-----NKIGHDWGLFMISADLPKY-MKSVMKFSIAKNGVLSSLPFLLMW 288 (1188)
Q Consensus 218 -~~~~p~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~y-l~~~~g~s~~~~g~l~~~~~l~~~ 288 (1188)
.||++++++. .+++.++...+.++.... ..++.....+....++|.| +++.+|++..+.+...+...++..
T Consensus 230 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 309 (438)
T 3o7q_A 230 KFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFF 309 (438)
T ss_dssp CCCCCTTTCCCCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccccccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHH
Confidence 3333332111 111112222222222111 4445555677788999999 899889999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCc
Q psy4738 289 LTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSP 368 (1188)
Q Consensus 289 ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 368 (1188)
++.++.++++||+++| ....++.+...++++.....+. ....... .+...+.+...+.......+..|
T Consensus 310 ~~~~~~g~l~~r~~~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~ 377 (438)
T 3o7q_A 310 IGRFTGTWLISRFAPH----------KVLAAYALIAMALCLISAFAGG-HVGLIAL-TLCSAFMSIQYPTIFSLGIKNLG 377 (438)
T ss_dssp HHHHHHHHHHHHSCHH----------HHHHHHHHHHHHHHHHHHHCCH-HHHHHHH-HHHHHHHTTHHHHHHHHHHSSCG
T ss_pred HHHHHHHHHHHHhcch----------HHHHHHHHHHHHHHHHHHHcCC-cHHHHHH-HHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999864 2333444444444444444433 2223333 33334455556666666555566
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCC
Q psy4738 369 NYAGTLMAIVNGIGAISGIISPYLIGILVPNNG 401 (1188)
Q Consensus 369 ~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G 401 (1188)
++++.+.++.+ ...+++.++|.+.|.+.|..|
T Consensus 378 ~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 378 QDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp GGHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 55888888877 788999999999999999988
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-30 Score=306.66 Aligned_cols=376 Identities=15% Similarity=0.105 Sum_probs=275.3
Q ss_pred cccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhh----hcccchhHHHHHH
Q psy4738 566 PEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPM----AAYMGPVWLIVWR 641 (1188)
Q Consensus 566 a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~----a~~~~~~~l~~~R 641 (1188)
..|.+.+|+ .++++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++++++++ ++ +.+.++++|
T Consensus 50 ~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~ 126 (451)
T 1pw4_A 50 AMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS--SIAVMFVLL 126 (451)
T ss_dssp HHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHS--SSSHHHHHH
T ss_pred HHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccc--cHHHHHHHH
Confidence 357788899 99999999999999999999999999999999999999999999999999999 88 566799999
Q ss_pred HHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHh
Q psy4738 642 FFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLF 721 (1188)
Q Consensus 642 ~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~ 721 (1188)
+++|++.+...|...+++.|++|+++|+++.++.+.+..+|.+++|.+++.+.+..+ +||+.|++.+++.++..++.++
T Consensus 127 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~w~~~f~~~~~~~~~~~~~~~~ 205 (451)
T 1pw4_A 127 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-DWHAALYMPAFCAILVALFAFA 205 (451)
T ss_dssp HHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC-CSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999876543 3999999999999888777777
Q ss_pred hccCCCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeecCCC
Q psy4738 722 IGYSEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPT 801 (1188)
Q Consensus 722 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1188)
.+||+|++++..++++.+...+. +.++. +.+..+.++ .
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~-----~~~~~~~~~-------------------------~ 243 (451)
T 1pw4_A 206 MMRDTPQSCGLPPIEEYKNDYPD------------DYNEK-----AEQELTAKQ-------------------------I 243 (451)
T ss_dssp HCCCSSTTTCCCSCTTTCCC------------------------------CCTH-------------------------H
T ss_pred hccCCHhhcCCCChhhhcccccc------------cchhh-----hhccccccc-------------------------c
Confidence 77777665433222211100000 00000 000000110 0
Q ss_pred cccccccchhHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhcccccccccchhHHHhhhccCcchhHHHHHHHHhhccc
Q psy4738 802 PWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSATSMGPAVGIILASYSGCNKVLAVMFFAIGMGFM 881 (1188)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 881 (1188)
.+++.++++.++...+..+....+.+++..++|.|+++..|+|+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----------------------------------- 288 (451)
T 1pw4_A 244 FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD----------------------------------- 288 (451)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHH-----------------------------------
T ss_pred hHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-----------------------------------
Confidence 134567788888888888888888888999999999988888764
Q ss_pred ccccCcccccccCCChhhHHHHHHHHhcccccccccccccccccccccccccccCCCCCCCcchhHHHHhhhhhhcccCC
Q psy4738 882 GFYYPSIRINSLDLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHGKQARYHWTNRAPYSFNFPLFKYVLRKHADKYNRFQ 961 (1188)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1188)
T Consensus 289 -------------------------------------------------------------------------------- 288 (451)
T 1pw4_A 289 -------------------------------------------------------------------------------- 288 (451)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCchhhhcccchhhHHhhHhhcccchhhhhhcccchhhhccCccchhhHHHHHHHHhhhchhhHHH--HhhccchhH
Q psy4738 962 DLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASNGLLSALPFLFMWIFSQGAGCLSDFI--VERQWFSMT 1039 (1188)
Q Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~~~~~~i~~~~~g~lsd~~--~~r~~~~~~ 1039 (1188)
+.+....+..++..++.++.|+++||+ ++|
T Consensus 289 ------------------------------------------~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~------ 320 (451)
T 1pw4_A 289 ------------------------------------------KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR------ 320 (451)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH------
T ss_pred ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------
Confidence 234445666688889999999999997 433
Q ss_pred HHHHHHHHhhhhhhHHHHHhhhccCC-chHHHHHHHHHHhhhhccccccccccccCC-CCcchhHHHHHhhhhhhh-hhh
Q psy4738 1040 LTRKIFATAASMGPAVGIILASYSGC-NKVLAVMFFAIGMGFMGFYYPSIRINSLDL-SPNYAATLMAIVNGLGAV-SGI 1116 (1188)
Q Consensus 1040 ~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-g~~ 1116 (1188)
+.......+...+++..+..... +.........+...+.+...+.......+. ++++||++.|+.+...++ |+.
T Consensus 321 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~ 397 (451)
T 1pw4_A 321 ---GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV 397 (451)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHH
Confidence 23333333333255555444432 333332222222222333333333444454 456699999999999999 999
Q ss_pred hhhhhheeecCCCccchhHHHHHHHHHHHHHhhhhhheec
Q psy4738 1117 FSAPLIGIMTPNSTMSEWRLVFWLTFIILAVTNLFYLVFG 1156 (1188)
Q Consensus 1117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1156 (1188)
++|.+.|.+.+..+ |+..|++.+++.+++.++.+...
T Consensus 398 ~~~~~~g~l~~~~g---~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 398 AASAIVGYTVDFFG---WDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHSSC---SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988754 88888888887777776665543
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-27 Score=285.61 Aligned_cols=396 Identities=14% Similarity=0.159 Sum_probs=269.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHH
Q psy4738 10 YILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVI 89 (1188)
Q Consensus 10 ~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i 89 (1188)
+.+.++..++.++...|...++.++|.+.+....+ ...+.+.+..+.|++.++|++|+.+
T Consensus 11 ~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~g~~~s~~~~G~~i 70 (491)
T 4gc0_A 11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAP--------------------QNLSESAANSLLGFCVASALIGCII 70 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGG--------------------GCCCHHHHHHHHHHHHHTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------------CCCCcccHHHHHHHHHHHHHHHHHH
Confidence 44555567788888999999999999887321100 0022344677889999999999999
Q ss_pred hHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHH------------------hhhccHHHHHHHHHHHHhhhccchhHHH
Q psy4738 90 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF------------------AARQSANWLIALRFFEGLGEGTTFPALN 151 (1188)
Q Consensus 90 ~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~------------------a~~~s~~~lli~R~l~Glg~g~~~p~~~ 151 (1188)
+++++|+++||+|||+++..+.+++.++++++++ + +|+++++++|+++|++.|...+.+.
T Consensus 71 G~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a--~~~~~l~~~R~l~G~g~G~~~~~~~ 148 (491)
T 4gc0_A 71 GGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLA--GYVPEFVIYRIIGGIGVGLASMLSP 148 (491)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGG--GCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999994 5 8999999999999999999999999
Q ss_pred HHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhcc------CCCCChhHHHHHHHHHHHHHHHhhhcccCCCCC
Q psy4738 152 TLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT------DGDWPEIFYLFGILGVLWFVAWCFLCYNDPASH 225 (1188)
Q Consensus 152 ~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~------~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~ 225 (1188)
.+++|+.|+++|++..++.+.+..+|.++++.++..+.... ..+||+.+.+..+..++..+ ..+..||+|+..
T Consensus 149 ~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~peSp~~L 227 (491)
T 4gc0_A 149 MYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLM-LLYTVPESPRWL 227 (491)
T ss_dssp HHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHH-HGGGSCCCHHHH
T ss_pred HHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhh-hhhcCCCChHHH
Confidence 99999999999999999999999999999999888876542 13577777666665555443 344556665310
Q ss_pred --CCCCHhHHHH----------------HHHHHhhhhh-------------------hHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 226 --PYISQREKEY----------------LADTIGCLAR-------------------NKIGHDWGLFMISADLPKYMKSV 268 (1188)
Q Consensus 226 --~~~~~~~~~~----------------~~~~~~~~~~-------------------~~~~~~~~~~~~~~~lp~yl~~~ 268 (1188)
+...++.++. .++......+ ..+....+.+.+..+.|.+.++
T Consensus 228 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 306 (491)
T 4gc0_A 228 MSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT- 306 (491)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred HHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-
Confidence 0000000000 0000000000 1112222344555566655554
Q ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHH--h-hcchHHHHHHHH
Q psy4738 269 MKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILAS--Y-AGCDQILVVTLF 345 (1188)
Q Consensus 269 ~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~--~-~~~~~~~~~~~~ 345 (1188)
.+.+............+...++.++.+++.||+|||+. ...+.....++++.+. . ...+.......+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 376 (491)
T 4gc0_A 307 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL----------QIIGALGMAIGMFSLGTAFYTQAPGIVALLSM 376 (491)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHH----------HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcch----------hccchHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 77888888888888899999999999999999997532 2222333333222222 1 122223222222
Q ss_pred HH-HHHHHhhhhhHHHHhhcccCc-hhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCC----ccchHHHHHHHHHHHHHH
Q psy4738 346 TV-GMAFMGFFYPSLKVNALDLSP-NYAGTLMAIVNGIGAISGIISPYLIGILVPNNG----VLSSLPFLLMWLTAIVAG 419 (1188)
Q Consensus 346 ~~-~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G----~~~~~~~~~~~~~~~~~~ 419 (1188)
.+ ..++.....+....+..|+.| +.|++++|+.+..+++++++++.+.+.+.+... ......+++.++++++..
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 456 (491)
T 4gc0_A 377 LFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAA 456 (491)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 22 222233334566667777776 789999999999999999999999888765421 223455666666666666
Q ss_pred HHH-hhhhhcccchhhhhhHh
Q psy4738 420 WFS-DYLVSKNIFSVTVIRKI 439 (1188)
Q Consensus 420 ~~~-~~~~~~~~~~~~~~~k~ 439 (1188)
++. .+.++.|.+..++..++
T Consensus 457 i~~~~~~PETkg~tLeei~~~ 477 (491)
T 4gc0_A 457 LFMWKFVPETKGKTLEELEAL 477 (491)
T ss_dssp HHHHHHCCCCTTCCHHHHGGG
T ss_pred HHHHheecCCCCCCHHHHHHH
Confidence 654 45566666666666554
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-28 Score=289.02 Aligned_cols=347 Identities=17% Similarity=0.185 Sum_probs=270.7
Q ss_pred HHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhHh
Q psy4738 13 GFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHI 92 (1188)
Q Consensus 13 ~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~~ 92 (1188)
+.++++..+....+...+++.+|.+. +|+|+|+++.+++.+.+.+++.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~g~s~~~~g~~~~~~~~~~~~~~~ 53 (375)
T 2gfp_A 2 LLMLVLLVAVGQMAQTIYIPAIADMA----------------------------RDLNVREGAVQSVMGAYLLTYGVSQL 53 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------TTSSSTTHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHhhhhHHHH----------------------------HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888999999999999998 78999999999999999999999999
Q ss_pred hHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHHHH
Q psy4738 93 PGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFA 172 (1188)
Q Consensus 93 ~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~~ 172 (1188)
++|+++||+|||+++..+.++.++++++++++ ++++.+++.|+++|++.+...|...+++.|++|+|||++++++...
T Consensus 54 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (375)
T 2gfp_A 54 FYGPISDRVGRRPVILVGMSIFMLATLVAVTT--SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNM 131 (375)
T ss_dssp THHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHH
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHhH---HHHHH-HHHhhhhhhHH
Q psy4738 173 GNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQRE---KEYLA-DTIGCLARNKI 248 (1188)
Q Consensus 173 ~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~~---~~~~~-~~~~~~~~~~~ 248 (1188)
+..+|..++|++++++.+. .|||+.|++.+++.++..+...+..||+|++++..++.. ++..+ +.........+
T Consensus 132 ~~~~g~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (375)
T 2gfp_A 132 GILVSPLLAPLIGGLLDTM--WNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLI 209 (375)
T ss_dssp HHHHHHHHHHHHHHHSSCH--HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCCCTTTCSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccccHHHHHHHHhcCcchHHHHHHHH
Confidence 9999999999999999988 799999999998888777655566666554332211110 11111 11111111445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHH-HHHHHH
Q psy4738 249 GHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIAS-VGPASG 327 (1188)
Q Consensus 249 ~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~-~~~~~~ 327 (1188)
......+....+.|.|+++.+|++..+.+.......++..++.++.+++.||.++ +....... ...+..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~----------~~~~~~~~~~~~~~~ 279 (375)
T 2gfp_A 210 GGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST----------LMWQSVICCLLAGLL 279 (375)
T ss_dssp HHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH----------HHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 5566777888899999999999999999999999999999999999999988764 11111111 111111
Q ss_pred HHHHHhh-cchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCchhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCC
Q psy4738 328 VILASYA-GCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNNG 401 (1188)
Q Consensus 328 l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G 401 (1188)
++..... ..+.+.......+...+.+...+.......+..|++||++.|+.+...++|+.++|.+.|.+.+..+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 280 MWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ 354 (375)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred HHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 1111111 1123333333344445555566666677777778999999999999999999999999999887654
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=284.26 Aligned_cols=350 Identities=15% Similarity=0.133 Sum_probs=255.6
Q ss_pred ccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHh---hhhcccchhHHHHHHHH
Q psy4738 567 EESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILT---PMAAYMGPVWLIVWRFF 643 (1188)
Q Consensus 567 ~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~---a~a~~~~~~~l~~~R~l 643 (1188)
.|.+++++|+++++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++++++ ++++ +.+.++++|++
T Consensus 49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l 126 (438)
T 3o7q_A 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM--NYTLFLVGLFI 126 (438)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccc--cHHHHHHHHHH
Confidence 577889999999999999999999999999999999999999999999999999999999 7778 67789999999
Q ss_pred HHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-----------------------
Q psy4738 644 EGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNY----------------------- 700 (1188)
Q Consensus 644 ~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~g----------------------- 700 (1188)
+|++.+...|...+++.|++|+++|+++.++.+....+|.+++|.+++.+.......
T Consensus 127 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (438)
T 3o7q_A 127 IAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVL 206 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999998333333
Q ss_pred -chHHHHHHHHHHHHHHHHHHhhccCCCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhch
Q psy4738 701 -WPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATS 779 (1188)
Q Consensus 701 -Wr~~F~i~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1188)
||+.|++.+.+.++..+..++. +.||+++..++++++.. ..
T Consensus 207 ~w~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~---------------------------~~--------- 248 (438)
T 3o7q_A 207 SVQTPYMIIVAIVLLVALLIMLT--KFPALQSDNHSDAKQGS---------------------------FS--------- 248 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--CCCCCTTTCCCCSSTTS---------------------------HH---------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--cCCcccccccccccccc---------------------------hh---------
Confidence 9999998887777665554433 22333321111110000 00
Q ss_pred hhHHHHHHHHhhhhheeecCCCcccccccchhHHHHHHHHhhchhhHHHHhhcchHH-HHhhhhhcccccccccchhHHH
Q psy4738 780 WPVIALVITQVVLISLFYLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKY-FASVIHFSVHSATSMGPAVGII 858 (1188)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~s~~~~~~~~~~~~~~ 858 (1188)
..+++.++++.++...+..+......++...++|.| +++..|+|+.
T Consensus 249 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------------ 295 (438)
T 3o7q_A 249 ---------------------ASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAG------------ 295 (438)
T ss_dssp ---------------------HHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHH------------
T ss_pred ---------------------hhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchh------------
Confidence 012334566667777777777777788888899999 8888888864
Q ss_pred hhhccCcchhHHHHHHHHhhcccccccCcccccccCCChhhHHHHHHHHhcccccccccccccccccccccccccccCCC
Q psy4738 859 LASYSGCNKVLAVMFFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHGKQARYHWTNRAP 938 (1188)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1188)
T Consensus 296 -------------------------------------------------------------------------------- 295 (438)
T 3o7q_A 296 -------------------------------------------------------------------------------- 295 (438)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcchhHHHHhhhhhhcccCCCCCCCchhhhcccchhhHHhhHhhcccchhhhhhcccchhhhccCccchhhHHHHHH
Q psy4738 939 YSFNFPLFKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASNGLLSALPFLFMWI 1018 (1188)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~~~~~~i 1018 (1188)
+.+.......++..+
T Consensus 296 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 310 (438)
T 3o7q_A 296 -----------------------------------------------------------------FAANYLTGTMVCFFI 310 (438)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------------HHHHHHHHHHHHHHH
Confidence 334445566688889
Q ss_pred HHhhhchhhHHHHhhccchhHHHHHHHHHhhhhhhHHHHHhhhccCCchHHHHHHHHHHhhhhccccccccccccCCCCc
Q psy4738 1019 FSQGAGCLSDFIVERQWFSMTLTRKIFATAASMGPAVGIILASYSGCNKVLAVMFFAIGMGFMGFYYPSIRINSLDLSPN 1098 (1188)
Q Consensus 1019 ~~~~~g~lsd~~~~r~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1098 (1188)
+.++.++++||+++| .....+..+.++++......+ +......+..++ .+.+...+.......+..|+
T Consensus 311 ~~~~~g~l~~r~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~ 378 (438)
T 3o7q_A 311 GRFTGTWLISRFAPH----------KVLAAYALIAMALCLISAFAG-GHVGLIALTLCS-AFMSIQYPTIFSLGIKNLGQ 378 (438)
T ss_dssp HHHHHHHHHHHSCHH----------HHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHH-HHHTTHHHHHHHHHHSSCGG
T ss_pred HHHHHHHHHHHhcch----------HHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHH-HHHHHHHHHHHHHHHhhccc
Confidence 999999999998443 344455555555555544433 333333333333 33333444444444455556
Q ss_pred chhHHHHHhhhhhhhhhhhhhhhheeecCCCccchhHHHHHHHHHHHHHhh
Q psy4738 1099 YAATLMAIVNGLGAVSGIFSAPLIGIMTPNSTMSEWRLVFWLTFIILAVTN 1149 (1188)
Q Consensus 1099 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1149 (1188)
+++.+.+..+ .+.+|+.++|.+.|.+.+..+ +++..|.+.....++..
T Consensus 379 ~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 379 DTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG--NIPTAELIPALCFAVIF 426 (438)
T ss_dssp GHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT--SSGGGGHHHHHHHHHHH
T ss_pred cccchhhHHH-HHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHH
Confidence 6888888877 778999999999999887632 26666666554444433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-28 Score=295.22 Aligned_cols=157 Identities=19% Similarity=0.307 Sum_probs=138.2
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhh------------------hcccchhHH
Q psy4738 576 WDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPM------------------AAYMGPVWL 637 (1188)
Q Consensus 576 ~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~------------------a~~~~~~~l 637 (1188)
.++.+.+|+.++|.+|+.++++++|+++||+|||+++.++.+++.++++++++ ++ +.+++
T Consensus 52 ~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~--~~~~l 129 (491)
T 4gc0_A 52 AANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAG--YVPEF 129 (491)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGG--CHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhh--hHHHH
Confidence 34567899999999999999999999999999999999999999999999984 55 66789
Q ss_pred HHHHHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC------CCchHHHHHHHHH
Q psy4738 638 IVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTN------NYWPVVFYLFGAV 711 (1188)
Q Consensus 638 ~~~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g------~gWr~~F~i~~~~ 711 (1188)
+++|+++|+|.|+..+.++.+++|+.|+++|++..++.+.+...|..+++.++..+....+ .+||+.+.+..++
T Consensus 130 ~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (491)
T 4gc0_A 130 VIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIP 209 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999988875432 2388888888888
Q ss_pred HHHHHHHHHhhccCCCCCCcccChhhh
Q psy4738 712 AILWFVVWLFIGYSEPGSNPFISQKEM 738 (1188)
Q Consensus 712 ~~~~~~~~~~~~~~~pe~~~~~~~~~~ 738 (1188)
.++..+..++. ||+|+|+..+++
T Consensus 210 ~~~~~~~~~~~----peSp~~L~~~~~ 232 (491)
T 4gc0_A 210 ALLFLMLLYTV----PESPRWLMSRGK 232 (491)
T ss_dssp HHHHHHHGGGS----CCCHHHHHHTTC
T ss_pred hhhhhhhhhcC----CCChHHHHHcCc
Confidence 87777766666 999998754433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-26 Score=277.01 Aligned_cols=344 Identities=14% Similarity=0.107 Sum_probs=246.4
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcc-cCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhcc
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQK-FGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGT 145 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr-~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~ 145 (1188)
+|+|+|..+.+++.+.+.+++.++++++|+++|| +|||+++..+.+++++++++++++ +|++.+++.|+++|++.+.
T Consensus 47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~ 124 (491)
T 4aps_A 47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP--FGASALFGSIILIIIGTGF 124 (491)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC--CSTTHHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHh
Confidence 4599999999999999999999999999999999 899999999999999999999998 9999999999999999999
Q ss_pred chhHHHHHHhhccCCCc--hhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCC
Q psy4738 146 TFPALNTLLAQWVPPTE--RGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 223 (1188)
Q Consensus 146 ~~p~~~~li~~~~p~~~--Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~ 223 (1188)
..|...+++.|++|+++ |++++++++.+..+|..++|++++.+.+. .|||++|++.++..++..+++.+..++..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 125 LKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA--AGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp HHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 99999999999999999 77888889999999999999999999998 899999999887777666555544333211
Q ss_pred C----CC-CCCHhHHHHHHHH---------------------------------------------H-------hhhhh-
Q psy4738 224 S----HP-YISQREKEYLADT---------------------------------------------I-------GCLAR- 245 (1188)
Q Consensus 224 ~----~~-~~~~~~~~~~~~~---------------------------------------------~-------~~~~~- 245 (1188)
+ ++ ..++++++...+. . ....+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (491)
T 4aps_A 203 PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRV 282 (491)
T ss_dssp SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------C
T ss_pred ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 1 11 1112221111110 0 00000
Q ss_pred --------hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHH
Q psy4738 246 --------NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFT 317 (1188)
Q Consensus 246 --------~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~ 317 (1188)
..+.....+.....++|.|.++..+.+..+.+.......+...++.++.+++.||+++|+... ....
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~-----~~~~ 357 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSS-----PTKF 357 (491)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---C-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCc-----hHHH
Confidence 111112233445567888999888888778888888899999999999999999999875422 1122
Q ss_pred HHHHHHHHHHHHHHHhh--------cchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCc-hhhHHHHHHHHHHHhhhhhh
Q psy4738 318 TIASVGPASGVILASYA--------GCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGTLMAIVNGIGAISGII 388 (1188)
Q Consensus 318 ~i~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~lgg~i 388 (1188)
..+....+++++..... ..+.........+...+.+...+.......+..| +.||+++|+.+...++|+.+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i 437 (491)
T 4aps_A 358 AVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL 437 (491)
T ss_dssp HHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333333332221 1233333334444444445545555556666555 77999999999999999999
Q ss_pred hhHHHHhhccCCCccchHHHHHHHHHHHHHHHHH
Q psy4738 389 SPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFS 422 (1188)
Q Consensus 389 ~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~ 422 (1188)
+|.+.+.+.+.. ....+...+.+.++..+..
T Consensus 438 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 468 (491)
T 4aps_A 438 NAQLVTLYNAKS---EVAYFSYFGLGSVVLGIVL 468 (491)
T ss_dssp HHHHGGGGGGSS---TTHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHhccc---HHHHHHHHHHHHHHHHHHH
Confidence 999999987753 2233444444444444443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-25 Score=270.21 Aligned_cols=151 Identities=17% Similarity=0.227 Sum_probs=137.4
Q ss_pred cccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhh-hCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhc
Q psy4738 570 QQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQK-FGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGE 648 (1188)
Q Consensus 570 i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr-~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~ 648 (1188)
.++|+|.+.++.+++.+.+.+++.+++++.|+++|| +|||+++..+.++++++.+++++++ +.++++++|+++|++.
T Consensus 45 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~ 122 (491)
T 4aps_A 45 STGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPF--GASALFGSIILIIIGT 122 (491)
T ss_dssp HHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCC--STTHHHHHHHHHHHHH
T ss_pred chhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHH
Confidence 346699999999999999999999999999999999 8999999999999999999999998 5677999999999999
Q ss_pred ccchhHHHHHHHhccCCCc--chhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q psy4738 649 GTTFPAANQLLAAWIPKTE--RGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGY 724 (1188)
Q Consensus 649 g~~~p~~~~~i~~~~~~~~--rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~ 724 (1188)
+...|...++++|++|+++ |++..++++.+..+|..++|.+++.+.+..+ ||+.|++.++..++..+...+..+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 123 GFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG--YHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999998 7788898999999999999999999999888 999999988877666555544433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-26 Score=270.87 Aligned_cols=213 Identities=14% Similarity=0.174 Sum_probs=177.8
Q ss_pred ccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHh
Q psy4738 567 EESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGL 646 (1188)
Q Consensus 567 ~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gi 646 (1188)
.|.+.+|+|.++++.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++++++++++ +.+.+++.|+++|+
T Consensus 23 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~g~ 100 (375)
T 2gfp_A 23 IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS--SLTVLIAASAMQGM 100 (375)
T ss_dssp HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHH
Confidence 4677899999999999999999999999999999999999999999999999999999999998 66779999999999
Q ss_pred hcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhccCC
Q psy4738 647 GEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSE 726 (1188)
Q Consensus 647 g~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~~~ 726 (1188)
+.+...|...+++.|++|+++|+++.++.+....+|..++|.+++.+.+..+ ||+.|++.+++.++..+...+.+||+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (375)
T 2gfp_A 101 GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN--WRACYLFLLVLCAGVTFSMARWMPET 178 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH--HHHHHHHHHHHHHHHHCCCCCSSCCC
T ss_pred HHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHCccc
Confidence 9999999999999999999999999999999999999999999999998777 99999999988877766444555444
Q ss_pred CCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeecCCCccccc
Q psy4738 727 PGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTPWKEM 806 (1188)
Q Consensus 727 pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (1188)
|++++ ++ + ...+ .+++.
T Consensus 179 ~~~~~---~~--~----------------------------~~~~------------------------------~~~~~ 195 (375)
T 2gfp_A 179 RPVDA---PR--T----------------------------RLLT------------------------------SYKTL 195 (375)
T ss_dssp STTTC---CC--C----------------------------CTTT------------------------------CSTHH
T ss_pred CCCCc---cc--c----------------------------cHHH------------------------------HHHHH
Confidence 32211 00 0 0001 12334
Q ss_pred ccchhHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhccc
Q psy4738 807 ATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVH 846 (1188)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~ 846 (1188)
+++|+++...+..+....+.+....+.|.|+++..|+|+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 235 (375)
T 2gfp_A 196 FGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSM 235 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 4556666666666777777888888999999998888864
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=241.72 Aligned_cols=340 Identities=14% Similarity=0.092 Sum_probs=215.7
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHH---HHhhhccH-HHHHHHHHHHHhh
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLT---PFAARQSA-NWLIALRFFEGLG 142 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~---a~a~~~s~-~~lli~R~l~Glg 142 (1188)
+++|+|+.+.|++.+.+.+++.++++++|+++||+|||+++..+..++++++... .++ +.. ..++..|.+.|++
T Consensus 36 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 113 (417)
T 2cfq_A 36 DINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG--PLLQYNILVGSIVGGIY 113 (417)
T ss_dssp TTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH--HHHHTTCCHHHHGGGSS
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999888776543211 222 211 1244567777766
Q ss_pred hccchhHHHHHHhhccCC--CchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhccc
Q psy4738 143 EGTTFPALNTLLAQWVPP--TERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN 220 (1188)
Q Consensus 143 ~g~~~p~~~~li~~~~p~--~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~ 220 (1188)
.+..++.....+.++.++ ++|+...+.......+|.+++|++++++.+. +||+.|++.++.+++..+.+++..||
T Consensus 114 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~---~~~~~f~~~~~~~~~~~~~~~~~~~~ 190 (417)
T 2cfq_A 114 LGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI---NNQFVFWLGSGCALILAVLLFFAKTD 190 (417)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH---CSHHHHTTTTTTTTTHHHHSCSSCCC
T ss_pred HHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh---chhHHHHHHHHHHHHHHHHHHHcCcc
Confidence 666555555566666543 4567777888888899999999999999875 79999998877765555544444444
Q ss_pred CCCCC---C--CCC--HhHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHH
Q psy4738 221 DPASH---P--YIS--QREKEYLADTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKF---SIAKNGVLSSLPFL 285 (1188)
Q Consensus 221 ~p~~~---~--~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~---s~~~~g~l~~~~~l 285 (1188)
+|++. + ..+ +.+.+...+.++.... ..+.....++....++|.|+++.++. +....+...+...+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 270 (417)
T 2cfq_A 191 APSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGEL 270 (417)
T ss_dssp CSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHH
T ss_pred cccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 32211 0 000 0001111111111111 11222233445556789998776543 24456777888888
Q ss_pred HHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcc
Q psy4738 286 LMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALD 365 (1188)
Q Consensus 286 ~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (1188)
+..++.++.++++||+++|+ ....+....++.++......+..... +...+.....+...+.......|
T Consensus 271 ~~~~~~~~~g~l~dr~g~~~----------~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~ 339 (417)
T 2cfq_A 271 LNASIMFFAPLIINRIGGKN----------ALLLAGTIMSVRIIGSSFATSALEVV-ILKTLHMFEVPFLLVGCFKYITS 339 (417)
T ss_dssp HHHHHHHHHHHHHHHHCHHH----------HHHHHHHHHHHHHHHHTTCCSHHHHH-HHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcHHH----------HHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998642 23334444444444444333322222 22222222233333334445555
Q ss_pred cCc-hhhHHHHHH-HHHHHhhhhhhhhHHHHhhccCCCccchHHHHHHHHHHHHHHHHHhh
Q psy4738 366 LSP-NYAGTLMAI-VNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSDY 424 (1188)
Q Consensus 366 ~~p-~~~g~~~g~-~~~~~~lgg~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 424 (1188)
..| +.||++.+. .+....+|+.++|.+.|.+.|..| ....+...+++.+++.+....
T Consensus 340 ~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g--~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 340 QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG--FQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH--HHHHHHHHHHHHHHHHHHHTT
T ss_pred HCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHh
Confidence 554 789999999 488899999999999999998766 344455555555555554433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-22 Score=248.45 Aligned_cols=145 Identities=17% Similarity=0.213 Sum_probs=133.7
Q ss_pred cCChhhHHHHHHHHHHHHHHhHhhHHHhhccc-CchHHHHHHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHhhhccch
Q psy4738 70 DWDEKTQGLILSAFYWGYVIMHIPGGLLAQKF-GGKHTLGFGILSTAIFTLLTPFAARQ-SANWLIALRFFEGLGEGTTF 147 (1188)
Q Consensus 70 ~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~-Grk~vl~~~lll~~v~sll~a~a~~~-s~~~lli~R~l~Glg~g~~~ 147 (1188)
++|..+.+++.+.+.+++.++++++|+++||+ |||+++..+.++++++.++++++ + +++.+++.|+++|++.+...
T Consensus 50 ~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~ 127 (524)
T 2xut_A 50 ELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF--EHSVQGFYTGLFLIALGSGGIK 127 (524)
T ss_dssp STTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHTTH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHhccccc
Confidence 39999999999999999999999999999999 99999999999999999999998 8 99999999999999999999
Q ss_pred hHHHHHHhhccCCCchhhHHHH---HHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhc
Q psy4738 148 PALNTLLAQWVPPTERGKIGSF---VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLC 218 (1188)
Q Consensus 148 p~~~~li~~~~p~~~Rg~~~gi---~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~ 218 (1188)
|...+++.|++|+++|+++.+. ...+..+|.+++|++++.+.+. .|||++|++.+++.++..+.+++..
T Consensus 128 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~--~g~~~~f~~~~~~~~~~~~~~~~~~ 199 (524)
T 2xut_A 128 PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN--FGAAVAFGIPGVLMFVATVFFWLGR 199 (524)
T ss_dssp HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT--SCHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999877666 8999999999999999999988 8999999999888776665554433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.5e-21 Score=232.92 Aligned_cols=144 Identities=18% Similarity=0.207 Sum_probs=130.8
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhhhhhhhhh-CChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhcccchhH
Q psy4738 576 WDETTQGLILGSFYWGYVIMHIPGGLLAQKF-GGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPA 654 (1188)
Q Consensus 576 ~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~-Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g~~~p~ 654 (1188)
.++.+.+++.+.+.+++.+++++.|+++||+ |||+++..+.++++++.+++++++ .+.+.+++.|+++|++.+...|.
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~ 129 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE-HSVQGFYTGLFLIALGSGGIKPL 129 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHTTHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhccccchh
Confidence 9999999999999999999999999999999 999999999999999999999887 13466999999999999999999
Q ss_pred HHHHHHhccCCCcchhHHHH---HHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhh
Q psy4738 655 ANQLLAAWIPKTERGKVGAF---VWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFI 722 (1188)
Q Consensus 655 ~~~~i~~~~~~~~rg~~~g~---~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~ 722 (1188)
..+++.|++|+++|+++.+. ++....+|.++||.+++.+.+..+ ||+.|++.+++.++..+...+.
T Consensus 130 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 130 VSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG--AAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp HHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC--HHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999887766 889999999999999999998877 9999999988877665555443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-22 Score=239.10 Aligned_cols=149 Identities=18% Similarity=0.212 Sum_probs=110.7
Q ss_pred cccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHH---HhhhhcccchhHHHHHHHHHHh
Q psy4738 570 QQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTI---LTPMAAYMGPVWLIVWRFFEGL 646 (1188)
Q Consensus 570 i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~l---l~a~a~~~~~~~l~~~R~l~Gi 646 (1188)
+++++|.|+.+.+++.+.+.+++.++++++|+++||+||||++..+..++++... .+++++... ..++..|++.|+
T Consensus 34 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 112 (417)
T 2cfq_A 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQ-YNILVGSIVGGI 112 (417)
T ss_dssp HHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHH-TTCCHHHHGGGS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 5677999999999999999999999999999999999999999999888766432 123332110 124556777777
Q ss_pred hcccchhHHHHHHHhccCC--CcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhh
Q psy4738 647 GEGTTFPAANQLLAAWIPK--TERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFI 722 (1188)
Q Consensus 647 g~g~~~p~~~~~i~~~~~~--~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~ 722 (1188)
+.+..++.....+.++.++ ++|++..|.......+|.+++|.+++.+.+. + ||+.|++.+++.++..+..++.
T Consensus 113 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-~--~~~~f~~~~~~~~~~~~~~~~~ 187 (417)
T 2cfq_A 113 YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-N--NQFVFWLGSGCALILAVLLFFA 187 (417)
T ss_dssp STTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-C--SHHHHTTTTTTTTTHHHHSCSS
T ss_pred HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-c--hhHHHHHHHHHHHHHHHHHHHc
Confidence 6666665555556565543 4567778888888889999999999999873 5 9999998877755544444333
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1188 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 1e-15 | |
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 3e-12 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 1e-05 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 4e-05 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 4e-04 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 79.0 bits (193), Expect = 1e-15
Identities = 62/390 (15%), Positives = 117/390 (30%), Gaps = 34/390 (8%)
Query: 68 EFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF--AA 125
E + G LS Y G ++ + + L G++ A L F A
Sbjct: 53 EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA 112
Query: 126 RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLS 185
S + L F G +G +P + W ERG I S + +G L
Sbjct: 113 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 172
Query: 186 GFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLAR 245
+ + + ++ ++ A+ + + + K D A
Sbjct: 173 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAE 232
Query: 246 NKIG------------------------HDWGLFMISADLPKYMKSVMKFSIAKNGVLSS 281
++ + I P Y+K V F++ K+
Sbjct: 233 QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYF 292
Query: 282 LPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILV 341
L ++ GW SD + + + V + V A+ V + AG + +
Sbjct: 293 LYEYAGIPGTLLCGWMSDKVFRGNRGATGVF-----FMTLVTIATIVYWMNPAGNPTVDM 347
Query: 342 VTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISG-IISPYLIGILVPNN 400
+ + +G G AGT G + G + + ++G V
Sbjct: 348 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF 407
Query: 401 GVLSSLPFLLMWLTAIVAGWFSDYLVSKNI 430
G F++M +I+A ++
Sbjct: 408 G--WDGGFMVMIGGSILAVILLIVVMIGEK 435
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 67.8 bits (164), Expect = 3e-12
Identities = 47/344 (13%), Positives = 86/344 (25%), Gaps = 7/344 (2%)
Query: 573 EFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPM--AA 630
E + G L Y G ++ + + L G++ A + A
Sbjct: 53 EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA 112
Query: 631 YMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLT 690
+ V F G +G +P + + W + ERG + + +G I L
Sbjct: 113 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 172
Query: 691 GLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFISQKEMDYLEETIGSLTR 750
L + N++ Y+ AIL + + P S +E +
Sbjct: 173 LLGMAWFNDWHA-ALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKA 231
Query: 751 RKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTPWKEMATSW 810
+ + K Q + P V ++ +L
Sbjct: 232 EQ----ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKS 287
Query: 811 PVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSATSMGPAVGIILASYSGCNKVLA 870
+ G L + + V T + A + + +G V
Sbjct: 288 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM 347
Query: 871 VMFFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGVQIFV 914
+ IG G A T
Sbjct: 348 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLG 391
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 47.1 bits (110), Expect = 1e-05
Identities = 35/369 (9%), Positives = 92/369 (24%), Gaps = 9/369 (2%)
Query: 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR 126
+ + G+I +A ++ GLL+ K G + L + I +
Sbjct: 36 DINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIF 95
Query: 127 QSANW---LIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSF 183
L+ + A + R
Sbjct: 96 GPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGA 155
Query: 184 LSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCL 243
++ + + L + + + A+ + +
Sbjct: 156 SIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALE 215
Query: 244 ---ARNKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDY 300
+ +S + + F + + ++T + +
Sbjct: 216 LFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASI 275
Query: 301 LVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLK 360
+ + + K +A + +I +S+A +V+ K
Sbjct: 276 MFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335
Query: 361 VNALDLSPNYAGTLMAIVNGIG-AISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAG 419
++ T+ + ++ I L G + + G +L++ L A+
Sbjct: 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF--QGAYLVLGLVALGFT 393
Query: 420 WFSDYLVSK 428
S + +S
Sbjct: 394 LISVFTLSG 402
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 45.1 bits (105), Expect = 4e-05
Identities = 30/388 (7%), Positives = 97/388 (25%), Gaps = 7/388 (1%)
Query: 340 LVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPN 399
L + M F+P + +S + G + A ++ + + L L
Sbjct: 14 LFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLR 73
Query: 400 NGVLSSLPFLLMWLTAIVAGWFSDYLVSKNIFSVTVIRKIFTTIASVGPASGVILASYAG 459
+L + +L+ F L + V + G +
Sbjct: 74 KYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS 133
Query: 460 CDQILVVTLFTVGMAFMGFFYPSL---KVNALDLSPNYAGTLMAIVNGIGAISGIISPYL 516
+ S+ + + G+ A++ +
Sbjct: 134 RRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPS 193
Query: 517 IGILVPNSTMLEWRLVFWISFGVIMITNVAYVFMGSGKIQSWNEPRHLLPEESQQYEFDW 576
+ ++ + + ++ + + + F
Sbjct: 194 SATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFAT 253
Query: 577 DETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMG-PV 635
E + G ++ +L+ I ++ +++ +
Sbjct: 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSAL 313
Query: 636 WLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWA-GIIMGTVISSSLTGLLL 694
+++ + + + + + + + + S L G +
Sbjct: 314 EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373
Query: 695 KLTNNYWPVVFYLFGAVAILWFVVWLFI 722
+ + + + G VA+ + ++ +F
Sbjct: 374 ESIG--FQGAYLVLGLVALGFTLISVFT 399
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 41.7 bits (96), Expect = 4e-04
Identities = 31/338 (9%), Positives = 84/338 (24%), Gaps = 18/338 (5%)
Query: 573 EFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYM 632
++ G+I + ++ GLL+ K G + L + I + + +
Sbjct: 37 INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG 96
Query: 633 GPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGL 692
+ + G F A + + F + M + +L
Sbjct: 97 PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGAS 156
Query: 693 LLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFISQKEMDYLEETIGSLTRRK 752
++ + + G+ L V LF ++ S+
Sbjct: 157 IVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSA------------------TVA 198
Query: 753 YVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTPWKEMATSWPV 812
+ + ++ L ++ + V + +
Sbjct: 199 NAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGT 258
Query: 813 IALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSATSMGPAVGIILASYSGCNKVLAVM 872
+ +I P + + +V II +S++ + ++
Sbjct: 259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVIL 318
Query: 873 FFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGV 910
+ + ++AT+ +
Sbjct: 319 KTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCF 356
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1188 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.89 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.81 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-32 Score=326.91 Aligned_cols=377 Identities=19% Similarity=0.197 Sum_probs=287.4
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHH
Q psy4738 6 ISQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYW 85 (1188)
Q Consensus 6 ~~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~l 85 (1188)
.+.||.+..+++++++..++++.+++.+.|.+. |+|+|.+|.|++.+++.+
T Consensus 20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-----------------------------~~g~s~~~~g~~~s~~~~ 70 (447)
T d1pw4a_ 20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-----------------------------EQGFSRGDLGFALSGISI 70 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-----------------------------SSTTCSSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HhCcCHHHHHHHHHHHHH
Confidence 345788888999999999999999999999876 579999999999999999
Q ss_pred HHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhh--hccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCch
Q psy4738 86 GYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA--RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTER 163 (1188)
Q Consensus 86 g~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~--~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~R 163 (1188)
+++++++++|+++||+|||+++..++++.++++++++++. .++++.+++.|+++|++.|..+|...+++.||+|++||
T Consensus 71 ~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r 150 (447)
T d1pw4a_ 71 AYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKER 150 (447)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999988762 24788999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHhHH---------H
Q psy4738 164 GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREK---------E 234 (1188)
Q Consensus 164 g~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~~~---------~ 234 (1188)
++++++.+.+..+|.++++.+++.+.+.. .+||+.|++.+.+.++..++.+++.+|+|++++....+|. +
T Consensus 151 ~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (447)
T d1pw4a_ 151 GGIVSVWNCAHNVGGGIPPLLFLLGMAWF-NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNE 229 (447)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHT-CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------
T ss_pred cccccccccccchhhhhhhhhhhhHhhhh-hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhh
Confidence 99999999999999999999999887762 4899999999999999988888888887765432111100 0
Q ss_pred HH----------HHH-Hhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 235 YL----------ADT-IGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFS 298 (1188)
Q Consensus 235 ~~----------~~~-~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~ls 298 (1188)
.. .+. ++.... ..++.....+....+.|.|+++.++++..+.+.......+...++.++.|++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 309 (447)
T d1pw4a_ 230 KAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMS 309 (447)
T ss_dssp ------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhh
Confidence 00 000 000000 34555566778889999999999999999999999999999999999999999
Q ss_pred HHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHhhhhhHHHHhhcccCc-hhhHHHHH
Q psy4738 299 DYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAG-CDQILVVTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGTLMA 376 (1188)
Q Consensus 299 dr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g 376 (1188)
||.++++. +............+........ .+.....+...+..+......+.......+..| +.||++.|
T Consensus 310 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g 382 (447)
T d1pw4a_ 310 DKVFRGNR-------GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG 382 (447)
T ss_dssp HHTSTTCH-------HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred hhcccccc-------ccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 99997652 2222222222222222222222 233343333333344444445555555566555 78999999
Q ss_pred HHHHHHhhhh-hhhhHHHHhhccCCCccchHHHHHHHHHHHHHHHH
Q psy4738 377 IVNGIGAISG-IISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWF 421 (1188)
Q Consensus 377 ~~~~~~~lgg-~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~ 421 (1188)
+.+..+++++ .++|.+.|.+.|..|+.. .+.....+.+++.++
T Consensus 383 ~~~~~~~~~g~~~~~~~~g~~~~~~g~~~--~~~~~~~~~~~~~~~ 426 (447)
T d1pw4a_ 383 FTGLFGYLGGSVAASAIVGYTVDFFGWDG--GFMVMIGGSILAVIL 426 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHH--HHHHHHHHHHHHHHH
Confidence 9999999865 568999999999998543 333333444444333
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=8e-31 Score=310.38 Aligned_cols=381 Identities=16% Similarity=0.128 Sum_probs=271.3
Q ss_pred CcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcc--cchhHHHHHHH
Q psy4738 565 LPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAY--MGPVWLIVWRF 642 (1188)
Q Consensus 565 ~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~--~~~~~l~~~R~ 642 (1188)
...|.++ |+|+|++|.||+.+.+.++++++++++|+++||+|||+++..++++.++++++++++++ .+.+.+++.|+
T Consensus 46 ~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (447)
T d1pw4a_ 46 LAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLF 124 (447)
T ss_dssp HHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHH
T ss_pred HHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHH
Confidence 3446554 68999999999999999999999999999999999999999999999999999987642 24567999999
Q ss_pred HHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhh
Q psy4738 643 FEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFI 722 (1188)
Q Consensus 643 l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~ 722 (1188)
++|++.|..++....++.|++|+++|++++++++.+..+|.+++|.+++.+.+..+ +||+.|++.+.+.++..++.++.
T Consensus 125 ~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~ 203 (447)
T d1pw4a_ 125 LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-DWHAALYMPAFCAILVALFAFAM 203 (447)
T ss_dssp HHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC-CSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhh-cccccchhhhhhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998776542 39999999999999988888888
Q ss_pred ccCCCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeecCCCc
Q psy4738 723 GYSEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTP 802 (1188)
Q Consensus 723 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1188)
+++.|++.+....+|.+...+... .+..++ +... + +..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~--~~~~---~-------------------------~~~ 241 (447)
T d1pw4a_ 204 MRDTPQSCGLPPIEEYKNDYPDDY------------NEKAEQ--ELTA---K-------------------------QIF 241 (447)
T ss_dssp CCCSSTTTCCCSCTTTCCC---------------------------CC---T-------------------------HHH
T ss_pred cccchhhcccchhhhhhhhcccch------------hhcccc--ccch---h-------------------------hHH
Confidence 888887765443332211000000 000000 0000 0 011
Q ss_pred ccccccchhHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhcccccccccchhHHHhhhccCcchhHHHHHHHHhhcccc
Q psy4738 803 WKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSATSMGPAVGIILASYSGCNKVLAVMFFAIGMGFMG 882 (1188)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 882 (1188)
.++.++++.++......+......++...+.|.|+++..+++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 285 (447)
T d1pw4a_ 242 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD------------------------------------ 285 (447)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHH------------------------------------
T ss_pred HHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccc------------------------------------
Confidence 33456777777777777888888888889999999988887764
Q ss_pred cccCcccccccCCChhhHHHHHHHHhcccccccccccccccccccccccccccCCCCCCCcchhHHHHhhhhhhcccCCC
Q psy4738 883 FYYPSIRINSLDLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHGKQARYHWTNRAPYSFNFPLFKYVLRKHADKYNRFQD 962 (1188)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 962 (1188)
T Consensus 286 -------------------------------------------------------------------------------- 285 (447)
T d1pw4a_ 286 -------------------------------------------------------------------------------- 285 (447)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCchhhhcccchhhHHhhHhhcccchhhhhhcccchhhhccCccchhhHHHHHHHHhhhchhhHHHHhhccchhHHHH
Q psy4738 963 LPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASNGLLSALPFLFMWIFSQGAGCLSDFIVERQWFSMTLTR 1042 (1188)
Q Consensus 963 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~~~~~~i~~~~~g~lsd~~~~r~~~~~~~~r 1042 (1188)
+.+....+..+...++.++.|+++||..++. +
T Consensus 286 -----------------------------------------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------~ 317 (447)
T d1pw4a_ 286 -----------------------------------------KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN-------R 317 (447)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC-------H
T ss_pred -----------------------------------------hhhhhhhcchhhhhhhhhhhhhhhhhccccc-------c
Confidence 2344455666888899999999999997665 3
Q ss_pred HHHHHhhhhhhHHHHHhhhccC-CchHHHHHHHHHHhhhhccccccccccccCCC-CcchhHHHHHhhhhhhhhh-hhhh
Q psy4738 1043 KIFATAASMGPAVGIILASYSG-CNKVLAVMFFAIGMGFMGFYYPSIRINSLDLS-PNYAATLMAIVNGLGAVSG-IFSA 1119 (1188)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~-~~~~ 1119 (1188)
+............+........ .+.........+..+..+...+.......|.. ++.+|++.|+.+..+++++ +.+|
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~ 397 (447)
T d1pw4a_ 318 GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAAS 397 (447)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333322 23333333333222233333333344444544 5569999999999999855 5688
Q ss_pred hhheeecCCCccchhHHHHHHHHHHHHHhhhhhheec
Q psy4738 1120 PLIGIMTPNSTMSEWRLVFWLTFIILAVTNLFYLVFG 1156 (1188)
Q Consensus 1120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1156 (1188)
.+.|.+.|..+ |+..|.+.....+++.++...+.
T Consensus 398 ~~~g~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 398 AIVGYTVDFFG---WDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp HHHHHHHHSSC---SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 88898888754 78888777766666665554443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=4.1e-22 Score=230.20 Aligned_cols=354 Identities=14% Similarity=0.084 Sum_probs=233.4
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHH----HHHHHHHHHhh
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANW----LIALRFFEGLG 142 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~----lli~R~l~Glg 142 (1188)
+++|+|++|.|++.+++.+++.++++++|+++||+|||+++..+..+..++..+..+. .+... .++.+.+.+.+
T Consensus 36 ~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 113 (417)
T d1pv7a_ 36 DINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF--IFGPLLQYNILVGSIVGGIY 113 (417)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHH--THHHHHHTTCHHHHHHTTTT
T ss_pred HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHhhhc
Confidence 5789999999999999999999999999999999999999999999999988888877 44443 45566666666
Q ss_pred hccchhHHHHHHhhccCC--CchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhccc
Q psy4738 143 EGTTFPALNTLLAQWVPP--TERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN 220 (1188)
Q Consensus 143 ~g~~~p~~~~li~~~~p~--~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~ 220 (1188)
.+...+.......+..++ +++.+..+........+..+++.+++.+.+. +|++.++.......+..++..+..++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (417)
T d1pv7a_ 114 LGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI---NNQFVFWLGSGCALILAVLLFFAKTD 190 (417)
T ss_dssp GGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc---cccccccchhhHHHHHHHHHHHHhcc
Confidence 666666655555544433 3456677788888899999999999999876 68888888887777777777777777
Q ss_pred CCCCCCCCCHhHH-------HHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHH
Q psy4738 221 DPASHPYISQREK-------EYLADTIGCLAR-----NKIGHDWGLFMISADLPKYMKS---VMKFSIAKNGVLSSLPFL 285 (1188)
Q Consensus 221 ~p~~~~~~~~~~~-------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~---~~g~s~~~~g~l~~~~~l 285 (1188)
+|++++..+++++ ....+....... ................+.+... ..+.+....+.......+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (417)
T d1pv7a_ 191 APSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGEL 270 (417)
T ss_dssp SCSSSCSSHHHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhcccccccccccccccccccchhhhhHHHHHHHHhhhccccccccccccccccchhhhccccccccc
Confidence 6655443222211 111111111111 1111111122222222222222 123345566777778888
Q ss_pred HHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcc
Q psy4738 286 LMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALD 365 (1188)
Q Consensus 286 ~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (1188)
+..++....+++.||.++| ....++....+++.+.....++.....+ ...+...+.+...+.......+
T Consensus 271 ~~~~~~~~~~~l~~r~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~ 339 (417)
T d1pv7a_ 271 LNASIMFFAPLIINRIGGK----------NALLLAGTIMSVRIIGSSFATSALEVVI-LKTLHMFEVPFLLVGCFKYITS 339 (417)
T ss_dssp HHHHHHTTHHHHHHHHCHH----------HHHHHHHHHHHHHHHHHHTCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhcccccc----------cchhhhHHHHHHhhhccccccccchhhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999853 3445555555555555555544444433 3334444444455555555555
Q ss_pred -cCchhhHHHHHHH-HHHHhhhhhhhhHHHHhhccCCCccchHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhH
Q psy4738 366 -LSPNYAGTLMAIV-NGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSDYLVSKNIFSVTVIRK 438 (1188)
Q Consensus 366 -~~p~~~g~~~g~~-~~~~~lgg~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 438 (1188)
.+++.||++.|+. +....+|+.++|.+.|++.|..|. ...+...+++.++..++..+..+++++.....|+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~ 412 (417)
T d1pv7a_ 340 QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF--QGAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQ 412 (417)
T ss_dssp HSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHHHH
T ss_pred HCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHhhcCCCccchhHhh
Confidence 4558899999985 556779999999999999999884 4455666666666666655555555444443443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=1.4e-18 Score=200.01 Aligned_cols=380 Identities=11% Similarity=-0.002 Sum_probs=234.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHH
Q psy4738 246 NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPA 325 (1188)
Q Consensus 246 ~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~ 325 (1188)
..+............+|.|+++.+|.|..+.|++.+...++..++.++.|+++||+|||+. ..++.....
T Consensus 15 ~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~----------l~~~~~~~~ 84 (417)
T d1pv7a_ 15 FFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKY----------LLWIITGML 84 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH----------HHHHHHHHH
Confidence 4455555666677889999999999999999999999999999999999999999998764 122222222
Q ss_pred HHHHHHHhhcchHHHH---HHHHHHHHHHHhhh-hhHHHHhhcccCc--hhhHHHHHHHHHHHhhhhhhhhHHHHhhccC
Q psy4738 326 SGVILASYAGCDQILV---VTLFTVGMAFMGFF-YPSLKVNALDLSP--NYAGTLMAIVNGIGAISGIISPYLIGILVPN 399 (1188)
Q Consensus 326 ~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~p--~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~ 399 (1188)
++.............. ...........+.. .+..........+ +.+....+........+..++|.+.+.+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 164 (417)
T d1pv7a_ 85 VMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI 164 (417)
T ss_dssp HTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc
Confidence 2222222221111111 11111111111111 1111222222222 2344456667777788888889988888765
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhHhhhhhccccchhhhHhhhccCCchHHHHHHHHHHHhhhccc
Q psy4738 400 NGVLSSLPFLLMWLTAIVAGWFSDYLVSKNIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFF 479 (1188)
Q Consensus 400 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 479 (1188)
.+. ...+.......+..........+++.++.++.++.-
T Consensus 165 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 203 (417)
T d1pv7a_ 165 NNQ--FVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGA--------------------------------------- 203 (417)
T ss_dssp CHH--HHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHS---------------------------------------
T ss_pred ccc--ccccchhhHHHHHHHHHHHHhcccccchhhhhhhhh---------------------------------------
Confidence 432 112222222222222222222222221111111100
Q ss_pred ccccceecccCCCcchhHHHHHHhhhhhccccccceeeeeeccCcccchhHHHHHHHHHHHHHhhhhheeeccccccccC
Q psy4738 480 YPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNSTMLEWRLVFWISFGVIMITNVAYVFMGSGKIQSWN 559 (1188)
Q Consensus 480 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~igp~i~~~l~~~~t~~~wr~vf~i~a~i~l~~~l~~l~~~~~~~q~w~ 559 (1188)
+-+++..... ......+..+......... ............
T Consensus 204 ---------~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------- 244 (417)
T d1pv7a_ 204 ---------NHSAFSLKLA---------------------LELFRQPKLWFLSLYVIGV-SCTYDVFDQQFA-------- 244 (417)
T ss_dssp ---------CCCCCCHHHH---------------------HHHTTSSHHHHHHHHHHHH-HHHHHHHHHHHH--------
T ss_pred ---------hccccccccc---------------------ccccccccccchhhhhHHH-HHHHHhhhcccc--------
Confidence 0000000000 0000111111111111111 111111000000
Q ss_pred CCCCCCcccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHH
Q psy4738 560 EPRHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIV 639 (1188)
Q Consensus 560 ~~~~~~a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~ 639 (1188)
.......++.+.+....+...+...++..++..+.+++.||+|+|+++..+.++.+++.++.++.+ +.+.+++
T Consensus 245 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 317 (417)
T d1pv7a_ 245 -----NFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVI 317 (417)
T ss_dssp -----HHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCC--CHHHHHH
T ss_pred -----ccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccccc--ccchhhH
Confidence 001122344455677888899999999999999999999999999999999999999999999988 6677999
Q ss_pred HHHHHHhhcccchhHHHHHHHhccCCCcchhHHHHH-HHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHH
Q psy4738 640 WRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFV-WAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVV 718 (1188)
Q Consensus 640 ~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~-~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~ 718 (1188)
.-++.|++.+...+....++.|.+|+++||+..++. +....+|..++|.++|.+.+..| |++.|++.+++.++..++
T Consensus 318 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g--~~~~~~~~~~~~~~~~~~ 395 (417)
T d1pv7a_ 318 LKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG--FQGAYLVLGLVALGFTLI 395 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999985 45678999999999999999988 999999999988887777
Q ss_pred HHhhcc
Q psy4738 719 WLFIGY 724 (1188)
Q Consensus 719 ~~~~~~ 724 (1188)
..+.++
T Consensus 396 ~~~~l~ 401 (417)
T d1pv7a_ 396 SVFTLS 401 (417)
T ss_dssp HHHHSC
T ss_pred HHHhhc
Confidence 777754
|