Psyllid ID: psy4795

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
Protein Sequence
MGDFTQAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKAAAIAAAEAKAAQVVEETDDERDDIDDEIIVTHL
Secondary Structure (PSIPRED)
ccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccHHHHHHHcccccccEcccccccccccccccEEEEcc
Coil and Loop (DISEMBL)
MGDFTQAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMkfigrsplMALGFIVHCCLIWILVvwrphpnnpkifFTISGLWGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMkfigrsplMALGFIVHCCLIWILVvwrphpnnpkiffTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKAAAIAAAEAKAAQVVeetdderddiddeIIVTHL
Flexible Loop (DISEMBL)
MGDFTQAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKAAAIAAAEakaaqvveetdderddidDEIIVTHL
Low Complexity Region (SEG)
MGDFTQAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLaedpkaaaiaaaeakaaQvveetdderddiddeiivtHL
Disordered region (IsUnstruct)
***FTQAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMM***********************************************
Disordered Region (DISOPRED)
MGDFTQAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVE*********************************************EIIVTH*
Disordered Region (DISEMBL)
MGDFTQAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMK**********************************DDIDDEIIVTHL
Disordered Region (DISPRO)
MGDFTQAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKA******************************DERDDIDDEIIVTHL
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGDFTQAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKAAAIAAAEAKAAQVVEETDDERDDIDDEIIVTHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	285	2.2.26 [Sep-21-2011]
Q9Y115	538	UNC93-like protein OS=Dro	yes	N/A	0.533	0.282	0.677	7e-60
A2VE54	457	Protein unc-93 homolog A	yes	N/A	0.610	0.380	0.489	9e-44
Q6DDL7	460	Protein unc-93 homolog A	N/A	N/A	0.589	0.365	0.476	3e-42
Q710D3	458	Protein unc-93 homolog A	yes	N/A	0.585	0.364	0.470	2e-41
Q86WB7	457	Protein unc-93 homolog A	yes	N/A	0.585	0.365	0.465	1e-40
Q5SPF7	465	Protein unc-93 homolog A	yes	N/A	0.642	0.393	0.430	1e-39
Q93380	705	Putative potassium channe	yes	N/A	0.543	0.219	0.375	3e-29
Q8VCW4	598	Protein unc-93 homolog B1	no	N/A	0.691	0.329	0.259	3e-09
Q94AA1	464	UNC93-like protein 3 OS=A	no	N/A	0.445	0.273	0.269	3e-09
Q9H1C4	597	Protein unc-93 homolog B1	no	N/A	0.691	0.329	0.254	1e-08

>sp|Q9Y115|UN93L_DROME UNC93-like protein OS=Drosophila melanogaster GN=CG4928 PE=2 SV=1

 Score =  230 bits (587), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 103/152 (67%), Positives = 131/152 (86%)

Query: 85  AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW 144
           AY++CALGV+ +G+VMICFGVVNA+CS+LFG++MK+IGR+P++ LG +VH  LI + + W
Sbjct: 327 AYVACALGVNKIGFVMICFGVVNALCSILFGSVMKYIGRTPIIVLGAVVHFTLITVELFW 386

Query: 145 RPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYA 204
           RP+P+NP IF+ +SGLWGVGDAVWQTQ+NGLYG LFRRNKEAAFSN+RLWES GFVIAYA
Sbjct: 387 RPNPDNPIIFYAMSGLWGVGDAVWQTQINGLYGLLFRRNKEAAFSNYRLWESAGFVIAYA 446

Query: 205 YSTHLCARMKLYVMGVVLVTGFCGYVIVEVRH 236
           Y+T LC +MKLY++  VL  G  GYVIVE+ +
Sbjct: 447 YATTLCTQMKLYILLAVLTLGCIGYVIVEILY 478

Drosophila melanogaster (taxid: 7227)

>sp|A2VE54|UN93A_BOVIN Protein unc-93 homolog A OS=Bos taurus GN=UNC93A PE=2 SV=1

 Score =  177 bits (449), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 89/182 (48%), Positives = 115/182 (63%), Gaps = 8/182 (4%)

Query: 85  AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW 144
           +Y +CALG+  VGYVMICFG  +A+CS+LFG L +  GR+ L ALG +     I  L++W
Sbjct: 281 SYTTCALGIQFVGYVMICFGAADALCSVLFGRLARHTGRTVLFALGAVTQLACIIALLLW 340

Query: 145 RPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYA 204
           +PHP+   +FF    LWG+ DAVWQTQ N L+G LF +NKEAAF+N+RLWE++GFVIA+ 
Sbjct: 341 KPHPSQLPVFFVFPSLWGMADAVWQTQNNALFGVLFEKNKEAAFANYRLWEALGFVIAFG 400

Query: 205 YSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKAAA-IAAAEAKAA 263
           YST LC  +KLYV+  VL      Y  VE         + R A+ P AA     AE  A 
Sbjct: 401 YSTFLCVSVKLYVLLGVLSAAMAAYGAVEY-------TESRKADGPLAAGRTKPAEDGAT 453

Query: 264 QV 265
           Q 
Sbjct: 454 QT 455

Bos taurus (taxid: 9913)

>sp|Q6DDL7|UN93A_XENLA Protein unc-93 homolog A OS=Xenopus laevis GN=unc93a PE=2 SV=1

 Score =  172 bits (435), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 82/172 (47%), Positives = 109/172 (63%), Gaps = 4/172 (2%)

Query: 85  AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW 144
           +Y++C+LG+  VGYVMICF   NA+CSLLFG L K+ GR  L  L  + +   +  L++W
Sbjct: 282 SYVTCSLGIHFVGYVMICFAATNAVCSLLFGQLSKYTGRICLFILAAVSNAACVIALLLW 341

Query: 145 RPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYA 204
            P+PN+  +FF    +WG+ DA+WQTQ N LYG LF  +KEAAF+N+RLWES+GFVIAY 
Sbjct: 342 EPYPNDFAVFFIFPAIWGMADAIWQTQTNALYGVLFDEHKEAAFANYRLWESLGFVIAYG 401

Query: 205 YSTHLCARMKLYVMGVVLVTGFCGYVIVE----VRHMMKARRQKRLAEDPKA 252
           YST LC  +KLY++  VL+     Y  VE    V H   A       ED  +
Sbjct: 402 YSTFLCVSVKLYILLAVLLIAIVFYGFVEYLEHVEHKKAASTTISQNEDSNS 453

Xenopus laevis (taxid: 8355)

>sp|Q710D3|UN93A_MOUSE Protein unc-93 homolog A OS=Mus musculus GN=Unc93a PE=2 SV=1

 Score =  169 bits (429), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/172 (47%), Positives = 113/172 (65%), Gaps = 5/172 (2%)

Query: 85  AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW 144
           +Y++CALG+  VGYVMICF  + A+CSLL+G + K+ GR+ L ALG  +H   I + ++W
Sbjct: 282 SYVTCALGIHFVGYVMICFSAMTALCSLLYGKISKYTGRAALYALGAAIHFSCIVVFLLW 341

Query: 145 RPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYA 204
            P+ N   +FF +SGLWG+ DAVWQTQ N L+G LF  NKE AF+N+RL E++GFVIA+ 
Sbjct: 342 HPNTNQLPVFFVLSGLWGMSDAVWQTQNNALFGVLFEENKEPAFANYRLGEAIGFVIAFG 401

Query: 205 YSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARR-----QKRLAEDPK 251
           YS+ LC   KLY++  VL     GY  VE   +  A +     +K  AE+ +
Sbjct: 402 YSSFLCVSTKLYILLGVLSLAMVGYGTVEYLEVKAASKVLGAEKKNQAEEEE 453

Mus musculus (taxid: 10090)

>sp|Q86WB7|UN93A_HUMAN Protein unc-93 homolog A OS=Homo sapiens GN=UNC93A PE=2 SV=1

 Score =  167 bits (422), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/172 (46%), Positives = 111/172 (64%), Gaps = 5/172 (2%)

Query: 85  AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW 144
           +Y++C LG+  VGYVMICF   +A+CS+L+G + ++ GR+ L  LG + H   +  L++W
Sbjct: 281 SYVTCTLGIQFVGYVMICFSATDALCSVLYGKVSQYTGRAVLYVLGAVTHVSCMIALLLW 340

Query: 145 RPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYA 204
           RP  ++  +FF  SGLWGV DAVWQTQ N LYG LF ++KEAAF+N+RLWE++GFVIA+ 
Sbjct: 341 RPRADHLAVFFVFSGLWGVADAVWQTQNNALYGVLFEKSKEAAFANYRLWEALGFVIAFG 400

Query: 205 YSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARR-----QKRLAEDPK 251
           YS  LC  +KLY++  VL      Y +VE        R     Q   AED +
Sbjct: 401 YSMFLCVHVKLYILLGVLSLTMVAYGLVECVESKNPIRPHAPGQVNQAEDEE 452

Homo sapiens (taxid: 9606)

>sp|Q5SPF7|UN93A_DANRE Protein unc-93 homolog A OS=Danio rerio GN=unc93a PE=3 SV=1

 Score =  163 bits (413), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 80/186 (43%), Positives = 110/186 (59%), Gaps = 3/186 (1%)

Query: 86  YISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWR 145
           Y++CALG+ +VG+VMICF   N++CS  FG L ++ GR  L  L   ++      L+ W+
Sbjct: 281 YVTCALGIHNVGFVMICFAASNSLCSFAFGRLAQYTGRIALFCLAAAINLGSFLGLLYWK 340

Query: 146 PHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAY 205
           PHP+   IFF    LWG+ DAVWQTQ N LYG LF +NKEAAF+N+R+WES+GFVIA+AY
Sbjct: 341 PHPDQLAIFFVFPALWGMADAVWQTQTNALYGILFAKNKEAAFANYRMWESLGFVIAFAY 400

Query: 206 STHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAED-PKAAAIAAAEAKAAQ 264
           ST +C   K+Y+   VL      Y+ VE         Q  + ED  K       + K   
Sbjct: 401 STFICLSTKIYIALAVLALTMVTYLYVEYNEYKHPTPQ--VTEDFLKPIKPKLKDDKEDN 458

Query: 265 VVEETD 270
           ++ +T 
Sbjct: 459 IISQTQ 464

Danio rerio (taxid: 7955)

>sp|Q93380|UNC93_CAEEL Putative potassium channel regulatory protein unc-93 OS=Caenorhabditis elegans GN=unc-93 PE=1 SV=4

 Score =  129 bits (324), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 100/157 (63%), Gaps = 2/157 (1%)

Query: 85  AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW 144
           A++ C LG+  +G+VM CFG+ +A+CSL+FG L+K  GR PL   G +V+  +I  L+VW
Sbjct: 525 AFVGCGLGIWQIGFVMACFGISDAVCSLVFGPLIKLFGRMPLFVFGAVVNLLMIVTLMVW 584

Query: 145 RPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLF-RRNKEAAFSNFRLWESVGFVIAY 203
             +  + +IF+ ++ +WG+ D VW TQ+NG +  L  R++ + AF+ +R WES+G  I +
Sbjct: 585 PLNAADTQIFYVVAAMWGMADGVWNTQINGFWVALVGRQSLQFAFTKYRFWESLGIAIGF 644

Query: 204 AYSTHLCARMKLYVMGVVLVTGFCGYVIVE-VRHMMK 239
           A   H+   + L +   +L+ G CG++ +E   H++K
Sbjct: 645 ALIRHVTVEIYLLITFFMLLLGMCGFLAIENFDHIIK 681

May contribute to coordination of muscle contraction as regulatory subunit of a nonessential potassium channel complex.

Caenorhabditis elegans (taxid: 6239)

>sp|Q8VCW4|UN93B_MOUSE Protein unc-93 homolog B1 OS=Mus musculus GN=Unc93b1 PE=1 SV=2

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 103/212 (48%), Gaps = 15/212 (7%)

Query: 74  KIFFTISGLWGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIV 133
           ++ F  +G    Y  C++G+  + Y++I + +  A  S + G L  ++ RS  +  G  +
Sbjct: 353 EVLFACTGFALGYGVCSMGLERLAYLLIAYSL-GASASSVLGLLGLWLPRSVPLVAGAGL 411

Query: 134 HCCLIWILVVWRPHP---NNPKIFFTISGLWGVGDAVWQTQVNGLYGTLF--RRNKEAAF 188
           H  L   L  W P P    +  IF+ ++ LWGVG A+ +T ++ L G L+  +  ++  F
Sbjct: 412 HLLLTLSLFFWAPAPRVLQHSWIFYFVAALWGVGSALNKTGLSTLLGILYEDKERQDFIF 471

Query: 189 SNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVR-HMMKARRQKRLA 247
           + +  W++V   + Y  S+ L  + KL V+ V LV     Y+ +E +       RQ R+ 
Sbjct: 472 TIYHWWQAVAIFVVYLGSS-LPMKAKLAVLLVTLVAAAASYLWMEQKLQQGLVPRQPRI- 529

Query: 248 EDPKAAAIAAAEAKAAQVVEETDDERDDIDDE 279
             PK       + +  + +EE + +  D++ E
Sbjct: 530 --PK----PQHKVRGYRYLEEDNSDESDMEGE 555

Plays an important role in innate and adaptive immunity by regulating nucleotide-sensing Toll-like receptor (TLR) signaling. Required for the transport of a subset of TLRs (including TLR3, TLR7 and TLR9) from the endoplasmic reticulum to endolysosomes where they can engage pathogen nucleotides and activate signaling cascades. May play a role in autoreactive B-cells removal.

Mus musculus (taxid: 10090)

>sp|Q94AA1|UN933_ARATH UNC93-like protein 3 OS=Arabidopsis thaliana GN=At3g09470 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 14/141 (9%)

Query: 87  ISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVH-------CCLIW 139
           ++ A+GVS VG  M  +G ++A+CS+  G        S L ++ FIV           +W
Sbjct: 276 VTPAIGVSGVGGAMAVYGALDAVCSMTAGRF-----TSGLSSITFIVSGGAVAQASVFLW 330

Query: 140 ILVVWRPHPN--NPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESV 197
           +L+ +R             ++ + G+GD +  TQ++ L   LF+ + E AF+  ++W+S 
Sbjct: 331 LLLGYRQTSGVLGTAYPLIMAAILGIGDGILNTQISALLALLFKHDTEGAFAQLKVWQSA 390

Query: 198 GFVIAYAYSTHLCARMKLYVM 218
              I +  S ++  +  L VM
Sbjct: 391 AIAIVFFLSPYISLQAMLIVM 411

Arabidopsis thaliana (taxid: 3702)

>sp|Q9H1C4|UN93B_HUMAN Protein unc-93 homolog B1 OS=Homo sapiens GN=UNC93B1 PE=1 SV=2

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 100/212 (47%), Gaps = 15/212 (7%)

Query: 74  KIFFTISGLWGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIV 133
           ++ F  +G+   Y  C++G+  + Y+++ + +  +  SLL    +      PL+A G  V
Sbjct: 353 EVLFACTGIALGYGVCSVGLERLAYLLVAYSLGASAASLLGLLGLWLPRPVPLVA-GAGV 411

Query: 134 HCCLIWILVVWRPHP---NNPKIFFTISGLWGVGDAVWQTQVNGLYGTLF--RRNKEAAF 188
           H  L +IL  W P P    +  I +  + LWGVG A+ +T ++ L G L+  +  ++  F
Sbjct: 412 HLLLTFILFFWAPVPRVLQHSWILYVAAALWGVGSALNKTGLSTLLGILYEDKERQDFIF 471

Query: 189 SNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVR-HMMKARRQKRLA 247
           + +  W++V     Y  S+ L  + KL V+ V LV     Y+ +E +     A RQ R+ 
Sbjct: 472 TIYHWWQAVAIFTVYLGSS-LHMKAKLAVLLVTLVAAAVSYLRMEQKLRRGVAPRQPRIP 530

Query: 248 EDPKAAAIAAAEAKAAQVVEETDDERDDIDDE 279
                      + +  + +EE + +  D + E
Sbjct: 531 R-------PQHKVRGYRYLEEDNSDESDAEGE 555

Plays an important role in innate and adaptive immunity by regulating nucleotide-sensing Toll-like receptor (TLR) signaling. Required for the transport of a subset of TLRs (including TLR3, TLR7 and TLR9) from the endoplasmic reticulum to endolysosomes where they can engage pathogen nucleotides and activate signaling cascades. May play a role in autoreactive B-cells removal.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
193688132	582	PREDICTED: UNC93-like protein-like [Acyr	0.6	0.293	0.812	2e-81
307184647	207	UNC93-like protein [Camponotus floridanu	0.614	0.845	0.788	3e-76
307208261	207	UNC93-like protein [Harpegnathos saltato	0.614	0.845	0.754	5e-74
340721117	560	PREDICTED: UNC93-like protein-like [Bomb	0.617	0.314	0.745	2e-73
380029597	561	PREDICTED: UNC93-like protein-like [Apis	0.617	0.313	0.734	2e-73
350399440	560	PREDICTED: UNC93-like protein-like [Bomb	0.617	0.314	0.740	2e-73
332021806	777	UNC93-like protein [Acromyrmex echinatio	0.585	0.214	0.778	4e-73
66555624	564	PREDICTED: UNC93-like protein-like [Apis	0.617	0.312	0.729	4e-73
156547345	577	PREDICTED: UNC93-like protein-like isofo	0.614	0.303	0.737	5e-72
383853902	560	PREDICTED: UNC93-like protein-like [Mega	0.617	0.314	0.734	2e-68

>gi|193688132|ref|XP_001945455.1| PREDICTED: UNC93-like protein-like [Acyrthosiphon pisum]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 139/171 (81%), Positives = 157/171 (91%)

Query: 85  AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW 144
           AY+SCALG+ SVGYVMICFGVVNAICSLLFGT+MK+IGR PLM LGF+VH  LIWIL+VW
Sbjct: 388 AYVSCALGIPSVGYVMICFGVVNAICSLLFGTIMKYIGRLPLMVLGFVVHSILIWILIVW 447

Query: 145 RPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYA 204
           RPHPNNPK+FFTISGLWGVGDAVWQTQ++G+YGTLFRRNKEAAFSN+RLWES GFV+AYA
Sbjct: 448 RPHPNNPKLFFTISGLWGVGDAVWQTQMSGIYGTLFRRNKEAAFSNYRLWESAGFVVAYA 507

Query: 205 YSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKAAAI 255
           YSTHLCAR KLYVMGVVL  GF GY+IVE+RH +KARR KRLA+DPK+  +
Sbjct: 508 YSTHLCARKKLYVMGVVLFVGFVGYIIVEIRHSVKARRLKRLADDPKSEPL 558

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184647|gb|EFN70976.1| UNC93-like protein [Camponotus floridanus]

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 138/175 (78%), Positives = 153/175 (87%)

Query: 85  AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW 144
           AYISCALGV  VGYVMICFGVVNA CSLLFG+LMKF+GR PLMALG IVH CLI +L++W
Sbjct: 13  AYISCALGVHRVGYVMICFGVVNAGCSLLFGSLMKFVGRQPLMALGAIVHACLIVVLLMW 72

Query: 145 RPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYA 204
           +PHP+NP IFF++SGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSN+RLWES GFVIAYA
Sbjct: 73  KPHPDNPYIFFSVSGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNYRLWESAGFVIAYA 132

Query: 205 YSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKAAAIAAAE 259
           YSTHLCARMKLYVM  VL+TG  GY+IVE+ H  K RR K +AEDPKAA I A +
Sbjct: 133 YSTHLCARMKLYVMLTVLITGSIGYIIVELLHRRKQRRLKAIAEDPKAAQIEANQ 187

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208261|gb|EFN85693.1| UNC93-like protein [Harpegnathos saltator]

 Score =  283 bits (724), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 132/175 (75%), Positives = 151/175 (86%)

Query: 85  AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW 144
           AYISCALGV  VGYVMICFGVVNA CSLLFG+LMKF+GR PLMALG IVH  L+ +L++W
Sbjct: 13  AYISCALGVHRVGYVMICFGVVNAGCSLLFGSLMKFVGRQPLMALGAIVHASLVVVLLMW 72

Query: 145 RPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYA 204
           +PHP+NP +F+++SGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSN+RLWES GFVIAYA
Sbjct: 73  KPHPDNPYVFYSVSGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNYRLWESAGFVIAYA 132

Query: 205 YSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKAAAIAAAE 259
           YSTHLCARMKLYVM  VL+TG  GY++VE+ H  K RR K +AEDPKAA   A +
Sbjct: 133 YSTHLCARMKLYVMLTVLITGTMGYIVVELLHRRKQRRLKAIAEDPKAAQAEANQ 187

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340721117|ref|XP_003398972.1| PREDICTED: UNC93-like protein-like [Bombus terrestris]

 Score =  281 bits (720), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 135/181 (74%), Positives = 153/181 (84%), Gaps = 5/181 (2%)

Query: 85  AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW 144
           AYISCALGV  VGYVMICFGVVNAICSL+FG+LMKF+GR PLM LG IVH  LI +L+ W
Sbjct: 366 AYISCALGVHRVGYVMICFGVVNAICSLVFGSLMKFVGRQPLMVLGAIVHVSLIVVLLHW 425

Query: 145 RPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYA 204
           +PHP+NP +F+T+SGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSN+RLWES GFVIAYA
Sbjct: 426 KPHPDNPYVFYTVSGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNYRLWESAGFVIAYA 485

Query: 205 YSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKAAAIAAAEAKAAQ 264
           YSTHLCARMKLYVM  VL+ G  GY+IVE+ H  K +R K +AEDPK     AA+A+A Q
Sbjct: 486 YSTHLCARMKLYVMLTVLLIGTIGYIIVELLHRRKQKRLKAIAEDPK-----AAQAEANQ 540

Query: 265 V 265
           V
Sbjct: 541 V 541

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029597|ref|XP_003698455.1| PREDICTED: UNC93-like protein-like [Apis florea]

 Score =  281 bits (720), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 133/181 (73%), Positives = 154/181 (85%), Gaps = 5/181 (2%)

Query: 85  AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW 144
           AYISCALGV  VGYVMICFGVVNAICSL+FG+LMKF+GR PLM LG IVH  LI +L+ W
Sbjct: 367 AYISCALGVHRVGYVMICFGVVNAICSLVFGSLMKFVGRQPLMVLGAIVHVSLIVVLLHW 426

Query: 145 RPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYA 204
           +P+P+NP +F+++SGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSN+RLWES GFVIAYA
Sbjct: 427 KPNPDNPYVFYSVSGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNYRLWESAGFVIAYA 486

Query: 205 YSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKAAAIAAAEAKAAQ 264
           YSTHLCARMKLYVM  VL+ G CGY++VE+ H  K +R K +AEDPK     AA+A+A Q
Sbjct: 487 YSTHLCARMKLYVMLTVLLVGTCGYIVVELLHRRKQKRLKAIAEDPK-----AAQAEANQ 541

Query: 265 V 265
           V
Sbjct: 542 V 542

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399440|ref|XP_003485523.1| PREDICTED: UNC93-like protein-like [Bombus impatiens]

 Score =  281 bits (720), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 134/181 (74%), Positives = 153/181 (84%), Gaps = 5/181 (2%)

Query: 85  AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW 144
           AYISCALGV  VGYVMICFGVVNAICSL+FG+LMKF+GR PLM LG I+H  LI +L+ W
Sbjct: 366 AYISCALGVHRVGYVMICFGVVNAICSLVFGSLMKFVGRQPLMVLGVIIHVSLIVVLLHW 425

Query: 145 RPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYA 204
           +PHP+NP +F+T+SGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSN+RLWES GFVIAYA
Sbjct: 426 KPHPDNPYVFYTVSGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNYRLWESAGFVIAYA 485

Query: 205 YSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKAAAIAAAEAKAAQ 264
           YSTHLCARMKLYVM  VL+ G  GY+IVE+ H  K +R K +AEDPK     AA+A+A Q
Sbjct: 486 YSTHLCARMKLYVMLTVLLIGTIGYIIVELLHRRKQKRLKAIAEDPK-----AAQAEANQ 540

Query: 265 V 265
           V
Sbjct: 541 V 541

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021806|gb|EGI62152.1| UNC93-like protein [Acromyrmex echinatior]

 Score =  280 bits (717), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 130/167 (77%), Positives = 146/167 (87%)

Query: 85  AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW 144
           AYISCALGV  VGYVMICFGVVNA CSLLFG+LMKF+GR PLMALG IVH  L+ +L++W
Sbjct: 581 AYISCALGVHRVGYVMICFGVVNAGCSLLFGSLMKFVGRQPLMALGAIVHASLVVVLLMW 640

Query: 145 RPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYA 204
           +PHP+NP +FF++SGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSN+RLWES GFVIAYA
Sbjct: 641 KPHPDNPYVFFSVSGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNYRLWESAGFVIAYA 700

Query: 205 YSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPK 251
           YSTHLCARMKLYVM  VL+ G  GY+IVE+ H  K RR K +AEDPK
Sbjct: 701 YSTHLCARMKLYVMLTVLIIGTIGYIIVELLHRRKQRRLKAIAEDPK 747

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66555624|ref|XP_396585.2| PREDICTED: UNC93-like protein-like [Apis mellifera]

 Score =  280 bits (717), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 132/181 (72%), Positives = 154/181 (85%), Gaps = 5/181 (2%)

Query: 85  AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW 144
           AYISCALGV  VGYVMICFGVVNAICSL+FG+LMKF+GR PLM LG IVH  LI +L+ W
Sbjct: 370 AYISCALGVHRVGYVMICFGVVNAICSLVFGSLMKFVGRQPLMVLGAIVHVSLIVVLLHW 429

Query: 145 RPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYA 204
           +P+P+NP +F+++SGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSN+RLWES GFVIAYA
Sbjct: 430 KPNPDNPYVFYSVSGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNYRLWESAGFVIAYA 489

Query: 205 YSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKAAAIAAAEAKAAQ 264
           YSTHLCARMKLYVM  VL+ G CGY++VE+ H  K +R K +A+DPK     AA+A+A Q
Sbjct: 490 YSTHLCARMKLYVMLTVLLVGTCGYIVVELLHRRKQKRLKAIADDPK-----AAQAEANQ 544

Query: 265 V 265
           V
Sbjct: 545 V 545

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156547345|ref|XP_001602619.1| PREDICTED: UNC93-like protein-like isoform 1 [Nasonia vitripennis] gi|345484362|ref|XP_003425014.1| PREDICTED: UNC93-like protein-like isoform 2 [Nasonia vitripennis]

 Score =  276 bits (707), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 129/175 (73%), Positives = 149/175 (85%)

Query: 85  AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW 144
           AYISCALGV  VGYVMICFGVVNA CSLLFG++MKF+GR PLMALG +VH  LI +L++W
Sbjct: 383 AYISCALGVHRVGYVMICFGVVNAGCSLLFGSVMKFVGRQPLMALGAVVHAALIGVLLIW 442

Query: 145 RPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYA 204
           RPHP++  +F+T+SGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSN+RLWES GFV+AYA
Sbjct: 443 RPHPDSSYVFYTVSGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNYRLWESAGFVVAYA 502

Query: 205 YSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKAAAIAAAE 259
           YSTHLCARMKLYVM  VL+ G  GY+IVE+ H  K +R K +AEDPKAA   A +
Sbjct: 503 YSTHLCARMKLYVMLNVLIIGSIGYIIVELLHRRKQKRLKAIAEDPKAAQAEANQ 557

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853902|ref|XP_003702461.1| PREDICTED: UNC93-like protein-like [Megachile rotundata]

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 133/181 (73%), Positives = 150/181 (82%), Gaps = 5/181 (2%)

Query: 85  AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW 144
           AYISCALGV  VGYVMICFGVVNA CSLLFG+LMKF+GR PLM LG IVH  L+ +L+ W
Sbjct: 366 AYISCALGVHKVGYVMICFGVVNAACSLLFGSLMKFVGRQPLMVLGAIVHVSLVVVLLHW 425

Query: 145 RPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYA 204
           +P+P NP +F+++SGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSN+RLWES GFVIAYA
Sbjct: 426 KPNPENPYVFYSVSGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNYRLWESAGFVIAYA 485

Query: 205 YSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKAAAIAAAEAKAAQ 264
           YSTHLCARMKLYVM  VL+ G  GY IVE+ H  K RR K +AEDPK     AA+A+A Q
Sbjct: 486 YSTHLCARMKLYVMLTVLLVGTMGYFIVELLHRRKQRRLKAIAEDPK-----AAQAEANQ 540

Query: 265 V 265
           V
Sbjct: 541 V 541

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
FB|FBgn0027556	538	CG4928 [Drosophila melanogaste	0.564	0.299	0.658	4.5e-59
UNIPROTKB|E2QT36	456	UNC93A "Uncharacterized protei	0.519	0.324	0.553	9.7e-46
UNIPROTKB|A2VE54	457	UNC93A "Protein unc-93 homolog	0.547	0.341	0.525	5.3e-45
UNIPROTKB|F1MB34	455	F1MB34 "Uncharacterized protei	0.547	0.342	0.525	5.3e-45
MGI|MGI:1933250	458	Unc93a "unc-93 homolog A (C. e	0.554	0.344	0.493	4.1e-43
UNIPROTKB|Q86WB7	457	UNC93A "Protein unc-93 homolog	0.515	0.321	0.516	5.2e-43
UNIPROTKB|F1NVP3	461	UNC93A "Uncharacterized protei	0.519	0.321	0.527	8.5e-43
ZFIN|ZDB-GENE-041014-304	467	unc93a "unc-93 homolog A (C. e	0.519	0.316	0.5	4.8e-39
FB|FBgn0033289	536	CG2121 [Drosophila melanogaste	0.550	0.292	0.388	5.6e-32
WB|WBGene00006822	705	unc-93 [Caenorhabditis elegans	0.796	0.321	0.326	2e-31

FB|FBgn0027556 CG4928 [Drosophila melanogaster (taxid:7227)]

 Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
 Identities = 106/161 (65%), Positives = 136/161 (84%)

Query:    85 AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW 144
             AY++CALGV+ +G+VMICFGVVNA+CS+LFG++MK+IGR+P++ LG +VH  LI + + W
Sbjct:   327 AYVACALGVNKIGFVMICFGVVNALCSILFGSVMKYIGRTPIIVLGAVVHFTLITVELFW 386

Query:   145 RPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYA 204
             RP+P+NP IF+ +SGLWGVGDAVWQTQ+NGLYG LFRRNKEAAFSN+RLWES GFVIAYA
Sbjct:   387 RPNPDNPIIFYAMSGLWGVGDAVWQTQINGLYGLLFRRNKEAAFSNYRLWESAGFVIAYA 446

Query:   205 YSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKR 245
             Y+T LC +MKLY++  VL  G  GYVIVE+ +  K R+ K+
Sbjct:   447 YATTLCTQMKLYILLAVLTLGCIGYVIVEILYRKKQRKLKK 487

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=ISS

UNIPROTKB|E2QT36 UNC93A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 458 (166.3 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
 Identities = 83/150 (55%), Positives = 109/150 (72%)

Query:    85 AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW 144
             +Y +CALG+  VGYVMICF   N++CS+L+G L ++ GR  L  LG + H   I  L++W
Sbjct:   280 SYTTCALGIHFVGYVMICFSATNSLCSVLYGRLSQYTGRKALYGLGAVTHLSCIVALLLW 339

Query:   145 RPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYA 204
             +PHP+   +FF  SGLWGV DAVWQTQ N LYG LF +NKEAAF+N+RLWE++GFVIA+ 
Sbjct:   340 KPHPDQLAVFFVFSGLWGVADAVWQTQNNVLYGVLFEKNKEAAFANYRLWEALGFVIAFG 399

Query:   205 YSTHLCARMKLYVM-GVVLVTGFCGYVIVE 233
             YST LC  +KLY++ GV+ +T    Y IVE
Sbjct:   400 YSTFLCVYIKLYILLGVLSLT-MLAYGIVE 428

GO:0005886 "plasma membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|A2VE54 UNC93A "Protein unc-93 homolog A" [Bos taurus (taxid:9913)]

 Score = 451 (163.8 bits), Expect = 5.3e-45, Sum P(2) = 5.3e-45
 Identities = 82/156 (52%), Positives = 106/156 (67%)

Query:    85 AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW 144
             +Y +CALG+  VGYVMICFG  +A+CS+LFG L +  GR+ L ALG +     I  L++W
Sbjct:   281 SYTTCALGIQFVGYVMICFGAADALCSVLFGRLARHTGRTVLFALGAVTQLACIIALLLW 340

Query:   145 RPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYA 204
             +PHP+   +FF    LWG+ DAVWQTQ N L+G LF +NKEAAF+N+RLWE++GFVIA+ 
Sbjct:   341 KPHPSQLPVFFVFPSLWGMADAVWQTQNNALFGVLFEKNKEAAFANYRLWEALGFVIAFG 400

Query:   205 YSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKA 240
             YST LC  +KLYV+  VL      Y  VE     KA
Sbjct:   401 YSTFLCVSVKLYVLLGVLSAAMAAYGAVEYTESRKA 436

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MB34 F1MB34 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 451 (163.8 bits), Expect = 5.3e-45, Sum P(2) = 5.3e-45
 Identities = 82/156 (52%), Positives = 106/156 (67%)

Query:    85 AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW 144
             +Y +CALG+  VGYVMICFG  +A+CS+LFG L +  GR+ L ALG +     I  L++W
Sbjct:   279 SYTTCALGIQFVGYVMICFGAADALCSVLFGRLARHTGRTVLFALGAVTQLACIIALLLW 338

Query:   145 RPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYA 204
             +PHP+   +FF    LWG+ DAVWQTQ N L+G LF +NKEAAF+N+RLWE++GFVIA+ 
Sbjct:   339 KPHPSQLPVFFVFPSLWGMADAVWQTQNNALFGVLFEKNKEAAFANYRLWEALGFVIAFG 398

Query:   205 YSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKA 240
             YST LC  +KLYV+  VL      Y  VE     KA
Sbjct:   399 YSTFLCVSVKLYVLLGVLSAAMAAYGAVEYTESRKA 434

GO:0005886 "plasma membrane" evidence=IEA

MGI|MGI:1933250 Unc93a "unc-93 homolog A (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 434 (157.8 bits), Expect = 4.1e-43, Sum P(2) = 4.1e-43
 Identities = 78/158 (49%), Positives = 107/158 (67%)

Query:    85 AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW 144
             +Y++CALG+  VGYVMICF  + A+CSLL+G + K+ GR+ L ALG  +H   I + ++W
Sbjct:   282 SYVTCALGIHFVGYVMICFSAMTALCSLLYGKISKYTGRAALYALGAAIHFSCIVVFLLW 341

Query:   145 RPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYA 204
              P+ N   +FF +SGLWG+ DAVWQTQ N L+G LF  NKE AF+N+RL E++GFVIA+ 
Sbjct:   342 HPNTNQLPVFFVLSGLWGMSDAVWQTQNNALFGVLFEENKEPAFANYRLGEAIGFVIAFG 401

Query:   205 YSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARR 242
             YS+ LC   KLY++  VL     GY  VE   +  A +
Sbjct:   402 YSSFLCVSTKLYILLGVLSLAMVGYGTVEYLEVKAASK 439

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q86WB7 UNC93A "Protein unc-93 homolog A" [Homo sapiens (taxid:9606)]

 Score = 432 (157.1 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 78/151 (51%), Positives = 110/151 (72%)

Query:    85 AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHC-CLIWILVV 143
             +Y++C LG+  VGYVMICF   +A+CS+L+G + ++ GR+ L  LG + H  C+I  L++
Sbjct:   281 SYVTCTLGIQFVGYVMICFSATDALCSVLYGKVSQYTGRAVLYVLGAVTHVSCMI-ALLL 339

Query:   144 WRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAY 203
             WRP  ++  +FF  SGLWGV DAVWQTQ N LYG LF ++KEAAF+N+RLWE++GFVIA+
Sbjct:   340 WRPRADHLAVFFVFSGLWGVADAVWQTQNNALYGVLFEKSKEAAFANYRLWEALGFVIAF 399

Query:   204 AYSTHLCARMKLYVM-GVVLVTGFCGYVIVE 233
              YS  LC  +KLY++ GV+ +T    Y +VE
Sbjct:   400 GYSMFLCVHVKLYILLGVLSLT-MVAYGLVE 429

GO:0005886 "plasma membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=NAS

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1NVP3 UNC93A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 430 (156.4 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
 Identities = 78/148 (52%), Positives = 102/148 (68%)

Query:    86 YISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWR 145
             Y++CALG+  VGYVMICF  VN++CSLLFG + +F GR  L AL  + +   I  L++W+
Sbjct:   286 YVTCALGIHYVGYVMICFSAVNSLCSLLFGKISQFTGRKFLFALATVTNTSCIIALLLWK 345

Query:   146 PHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAY 205
             PH N   +FF    LWG+ DA+WQTQ NGLYG LF ++ EAAF+N+RLWES GFVIA+ Y
Sbjct:   346 PHFNQLVVFFIFPALWGLSDAIWQTQTNGLYGVLFEKHTEAAFANYRLWESCGFVIAFGY 405

Query:   206 STHLCARMKLYVMGVVLVTGFCGYVIVE 233
             ST L   +KLY++  VL      Y +VE
Sbjct:   406 STTLRVYIKLYILLAVLTLSMVTYGVVE 433

GO:0005886 "plasma membrane" evidence=IEA

ZFIN|ZDB-GENE-041014-304 unc93a "unc-93 homolog A (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 74/148 (50%), Positives = 99/148 (66%)

Query:    86 YISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWR 145
             Y++CALG+ +VG+VMICF   N++CS  FG L ++ GR  L  L   ++      L+ W+
Sbjct:   283 YVTCALGIHNVGFVMICFAASNSLCSFAFGRLAQYTGRIALFCLAAAINLGSFLGLLYWK 342

Query:   146 PHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAY 205
             PHP+   IFF    LWG+ DAVWQTQ N LYG LF +NKEAAF+N+R+WES+GFVIA+AY
Sbjct:   343 PHPDQLAIFFVFPALWGMADAVWQTQTNALYGILFAKNKEAAFANYRMWESLGFVIAFAY 402

Query:   206 STHLCARMKLYVMGVVLVTGFCGYVIVE 233
             ST +C   K+Y+   VL      Y+ VE
Sbjct:   403 STFICLSTKIYIALAVLALTMVTYLYVE 430

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

FB|FBgn0033289 CG2121 [Drosophila melanogaster (taxid:7227)]

 Score = 337 (123.7 bits), Expect = 5.6e-32, Sum P(2) = 5.6e-32
 Identities = 61/157 (38%), Positives = 93/157 (59%)

Query:    85 AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW 144
             ++++C  G+S +G+ MICFGV NA+ + + G L++ IGR  L AL  +V+ CL+  +  W
Sbjct:   372 SFVACGWGISRIGFAMICFGVANAVAAGIAGALVERIGRVTLAALCAVVNLCLLTYMYTW 431

Query:   145 RPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYA 204
                  +   + T + +WG+ D VW   VN  YG LF  +  AA+SNFRLWES G VI Y 
Sbjct:   432 EAREGDYMSYCTFAAVWGICDGVWLVVVNAFYGILFPNHLIAAYSNFRLWESTGSVIGYV 491

Query:   205 YSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKAR 241
              S+ LC   KL ++ + ++ G  GY ++E R   K +
Sbjct:   492 ISSQLCTSTKLVILIIFILVGCVGYGLIEYRFWQKQK 528

GO:0003009 "skeletal muscle contraction" evidence=IMP

WB|WBGene00006822 unc-93 [Caenorhabditis elegans (taxid:6239)]

 Score = 353 (129.3 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 77/236 (32%), Positives = 132/236 (55%)

Query:     7 AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLI-WILVV 65
             AY++C + +S  G +M  F  +NA+        M     S +  L  + H   I ++L+V
Sbjct:   452 AYLACVI-IS--GMIMSMF--LNALAKDARNRKMAQKFNSEIFYL-MLKHLINIKFMLLV 505

Query:    66 WRPHPNNPKIFFTISGLWGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSP 125
                  N  +  F +     A++ C LG+  +G+VM CFG+ +A+CSL+FG L+K  GR P
Sbjct:   506 PLTIFNGLEQAFLVGVYTKAFVGCGLGIWQIGFVMACFGISDAVCSLVFGPLIKLFGRMP 565

Query:   126 LMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLF-RRNK 184
             L   G +V+  +I  L+VW  +  + +IF+ ++ +WG+ D VW TQ+NG +  L  R++ 
Sbjct:   566 LFVFGAVVNLLMIVTLMVWPLNAADTQIFYVVAAMWGMADGVWNTQINGFWVALVGRQSL 625

Query:   185 EAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVE-VRHMMK 239
             + AF+ +R WES+G  I +A   H+   + L +   +L+ G CG++ +E   H++K
Sbjct:   626 QFAFTKYRFWESLGIAIGFALIRHVTVEIYLLITFFMLLLGMCGFLAIENFDHIIK 681

GO:0016021 "integral to membrane" evidence=IEA

GO:0016477 "cell migration" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0019915 "lipid storage" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0055120 "striated muscle dense body" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Y115	UN93L_DROME	No assigned EC number	0.6776	0.5333	0.2825	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	285
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-05
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	0.001
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.003

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 36/233 (15%), Positives = 75/233 (32%), Gaps = 24/233 (10%)

Query: 18  VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFF 77
           +G     FG+   +  LL G L + +G   L  +  I+   L+  L++         +  
Sbjct: 125 LGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAIL--GLLLALLLLFLLRLLLLLAL 182

Query: 78  TISGLWGAYISCA------------LGVSSVGYVMICFGVVNAICSLLFGTLMKFIGR-S 124
               L   Y                L  +  G ++  FG+   + +LL G L   +GR  
Sbjct: 183 AFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR 242

Query: 125 PLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLF-RRN 183
            L+ +G ++    + +L +         +      L G G       +  L   L     
Sbjct: 243 LLLLIGLLLAALGLLLLALAPSLA----LLLVALLLLGFGLGFAFPALLTLASELAPPEA 298

Query: 184 KEAAFSNFRLWESVGFVIAYAYS----THLCARMKLYVMGVVLVTGFCGYVIV 232
           +  A   F  + S+G  +    +              ++  + +      +++
Sbjct: 299 RGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLL 351

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 38/159 (23%), Positives = 55/159 (34%), Gaps = 27/159 (16%)

Query: 8   YISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWR 67
            I   LG+S    V I  GVVN + + +   L+   GR PL+ LG         +L V  
Sbjct: 278 TIFETLGLSDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVAL 337

Query: 68  PHPNNPK------IFFTISGLWGAYISC-ALGVSSVGYV--------------MICFGVV 106
                 K      I F +      +I+  ALG   V +V              M      
Sbjct: 338 LGVAKSKGAGIVAIVFIL-----LFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAA 392

Query: 107 NAICSLLFGTLMKFI-GRSPLMALGFIVHCCLIWILVVW 144
           N + + L G L   I G              +++IL V+
Sbjct: 393 NWLANFLIGFLFPIITGAIGGYVFLVFAGLLVLFILFVF 431

Length = 449

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 24/145 (16%), Positives = 50/145 (34%), Gaps = 14/145 (9%)

Query: 13  LGVSSVGYVMICFGVVNAICSLLFGTLMKFIGR-SPLMALGFIVHCCLIWILVVWRPHPN 71
           L  +  G ++  FG+   + +LL G L   +GR   L+ +G ++    + +L +      
Sbjct: 208 LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL 267

Query: 72  NPKIFFTISGLWGAYISCALGV-----------SSVGYVMICFGVVNAICSLLFGTLMKF 120
                  +    G      L +           ++ G       +  A+  LL G L+  
Sbjct: 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT 327

Query: 121 IGRSPLMALGFIVHCCLIWILVVWR 145
            G   +  +       L+  L++  
Sbjct: 328 GGYGGVFLILAA--LALLAALLLLL 350

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	285
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.59
KOG3098|consensus	461		99.52
PRK10504	471	putative transporter; Provisional	99.49
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.47
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.46
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.45
PRK03893	496	putative sialic acid transporter; Provisional	99.45
PRK10642	490	proline/glycine betaine transporter; Provisional	99.43
PRK10489	417	enterobactin exporter EntS; Provisional	99.43
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.42
TIGR00893	399	2A0114 d-galactonate transporter.	99.41
PRK15011	393	sugar efflux transporter B; Provisional	99.41
PRK03545	390	putative arabinose transporter; Provisional	99.4
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.4
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.39
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.38
PRK05122	399	major facilitator superfamily transporter; Provisi	99.37
PRK10054	395	putative transporter; Provisional	99.36
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.36
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.36
PRK09874	408	drug efflux system protein MdtG; Provisional	99.36
TIGR00895	398	2A0115 benzoate transport.	99.36
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.35
TIGR00900	365	2A0121 H+ Antiporter protein.	99.35
PRK03699	394	putative transporter; Provisional	99.35
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.34
TIGR00891	405	2A0112 putative sialic acid transporter.	99.34
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.34
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.34
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.34
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.33
PRK12382	392	putative transporter; Provisional	99.32
PRK12382	392	putative transporter; Provisional	99.31
TIGR00900	365	2A0121 H+ Antiporter protein.	99.3
TIGR00898	505	2A0119 cation transport protein.	99.29
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.29
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.29
PRK09952	438	shikimate transporter; Provisional	99.29
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.28
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.28
PRK12307	426	putative sialic acid transporter; Provisional	99.28
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.27
PRK05122	399	major facilitator superfamily transporter; Provisi	99.27
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.27
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.26
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.24
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.24
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.24
PRK03633	381	putative MFS family transporter protein; Provision	99.24
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.24
PRK10091	382	MFS transport protein AraJ; Provisional	99.23
KOG1330|consensus	493		99.23
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.23
PRK11663	434	regulatory protein UhpC; Provisional	99.22
PRK03545	390	putative arabinose transporter; Provisional	99.22
PRK09528	420	lacY galactoside permease; Reviewed	99.22
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.22
PRK09705	393	cynX putative cyanate transporter; Provisional	99.22
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.22
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.22
PRK12307	426	putative sialic acid transporter; Provisional	99.22
TIGR00891	405	2A0112 putative sialic acid transporter.	99.21
PRK10133	438	L-fucose transporter; Provisional	99.21
PRK11043	401	putative transporter; Provisional	99.21
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.2
TIGR00893	399	2A0114 d-galactonate transporter.	99.2
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.2
PRK15075	434	citrate-proton symporter; Provisional	99.2
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.2
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.19
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.19
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.19
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.19
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.18
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.18
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.18
PLN00028	476	nitrate transmembrane transporter; Provisional	99.18
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.17
KOG3097|consensus	390		99.17
PRK11010	491	ampG muropeptide transporter; Validated	99.17
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.17
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.16
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.16
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.16
PRK11663	434	regulatory protein UhpC; Provisional	99.16
PRK10429	473	melibiose:sodium symporter; Provisional	99.16
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.15
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.15
TIGR00901	356	2A0125 AmpG-related permease.	99.15
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.15
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.15
PRK10504	471	putative transporter; Provisional	99.13
PRK11043	401	putative transporter; Provisional	99.13
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.13
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.13
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.13
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.13
PRK03633	381	putative MFS family transporter protein; Provision	99.13
PRK10091	382	MFS transport protein AraJ; Provisional	99.13
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.13
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.13
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.11
PRK03893	496	putative sialic acid transporter; Provisional	99.11
PRK09705	393	cynX putative cyanate transporter; Provisional	99.11
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.11
PRK10489	417	enterobactin exporter EntS; Provisional	99.11
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.11
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.11
PRK11902	402	ampG muropeptide transporter; Reviewed	99.1
PRK09874	408	drug efflux system protein MdtG; Provisional	99.1
TIGR00895	398	2A0115 benzoate transport.	99.09
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.08
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.08
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.07
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.07
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.07
KOG2615|consensus	451		99.06
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.06
KOG3097|consensus	390		99.06
PRK03699	394	putative transporter; Provisional	99.05
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.05
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.04
KOG0255|consensus	521		99.04
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.04
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.03
PRK09848	448	glucuronide transporter; Provisional	99.03
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.03
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.02
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.02
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.02
PTZ00207	591	hypothetical protein; Provisional	99.01
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.01
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.01
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.0
PLN00028	476	nitrate transmembrane transporter; Provisional	98.98
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.97
PRK10642	490	proline/glycine betaine transporter; Provisional	98.97
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.97
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.96
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.96
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.96
PRK09669	444	putative symporter YagG; Provisional	98.95
PRK09528	420	lacY galactoside permease; Reviewed	98.95
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.95
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.93
KOG0254|consensus	513		98.92
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.91
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.89
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.89
PRK10054	395	putative transporter; Provisional	98.89
TIGR00901	356	2A0125 AmpG-related permease.	98.89
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.88
PRK11462	460	putative transporter; Provisional	98.86
PRK09952	438	shikimate transporter; Provisional	98.85
PF13347	428	MFS_2: MFS/sugar transport protein	98.85
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.84
PRK11902	402	ampG muropeptide transporter; Reviewed	98.84
PRK09669	444	putative symporter YagG; Provisional	98.82
PRK10429	473	melibiose:sodium symporter; Provisional	98.82
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.82
TIGR00898	505	2A0119 cation transport protein.	98.82
KOG0569|consensus	485		98.81
KOG3764|consensus	464		98.81
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.8
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.79
PRK15075	434	citrate-proton symporter; Provisional	98.79
KOG2504|consensus	509		98.79
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.78
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.77
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.77
PF13347	428	MFS_2: MFS/sugar transport protein	98.77
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.75
COG2211	467	MelB Na+/melibiose symporter and related transport	98.75
PRK09848	448	glucuronide transporter; Provisional	98.74
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.74
KOG2532|consensus	466		98.74
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.74
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.73
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.73
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.72
TIGR00805	633	oat sodium-independent organic anion transporter.	98.72
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.71
PRK10133	438	L-fucose transporter; Provisional	98.69
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.64
PRK11462	460	putative transporter; Provisional	98.63
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.62
PRK15011	393	sugar efflux transporter B; Provisional	98.61
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.57
KOG0252|consensus	538		98.57
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.56
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.53
KOG0569|consensus	485		98.52
PRK11010	491	ampG muropeptide transporter; Validated	98.51
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.45
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.44
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.44
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.43
KOG2533|consensus	495		98.42
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.37
KOG2532|consensus	466		98.33
COG2211	467	MelB Na+/melibiose symporter and related transport	98.3
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.29
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.28
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.22
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.2
KOG4686|consensus	459		98.2
KOG2325|consensus	488		98.19
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.18
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.15
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.1
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.02
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.96
KOG2504|consensus	509		97.95
KOG0253|consensus	528		97.88
COG0477	338	ProP Permeases of the major facilitator superfamil	97.86
KOG3764|consensus	464		97.81
KOG2533|consensus	495		97.79
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.78
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.73
KOG3762|consensus	618		97.73
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.73
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.73
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.72
PTZ00207	591	hypothetical protein; Provisional	97.59
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.58
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.47
PF12832	77	MFS_1_like: MFS_1 like family	97.41
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.32
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.27
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.22
KOG0637|consensus	498		97.21
KOG0254|consensus	513		97.14
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.13
KOG1330|consensus	493		97.12
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.1
KOG2816|consensus	463		97.07
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.05
KOG0253|consensus	528		97.05
KOG2816|consensus	463		96.98
KOG2563|consensus	480		96.9
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	96.77
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.77
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	96.72
KOG2615|consensus	451		96.65
KOG2563|consensus	480		96.59
TIGR00805	633	oat sodium-independent organic anion transporter.	96.52
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.49
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.45
KOG0255|consensus	521		96.16
KOG0252|consensus	538		96.11
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.08
KOG4686|consensus	459		95.94
KOG1237|consensus	571		95.73
KOG1479|consensus	406		95.42
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	95.34
KOG3098|consensus	461		95.15
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	94.54
PRK03612	521	spermidine synthase; Provisional	94.51
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	94.27
KOG3626|consensus	735		93.76
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	93.61
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	93.42
KOG3762|consensus	618		93.37
COG3619	226	Predicted membrane protein [Function unknown]	92.62
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	91.32
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	91.24
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	90.97
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	90.89
PF08229	196	SHR3_chaperone: ER membrane protein SH3 ; InterPro	90.88
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	90.71
PF12794	340	MscS_TM: Mechanosensitive ion channel inner membra	90.48
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	89.75
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	88.34
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	87.58
PRK09412	433	anaerobic C4-dicarboxylate transporter; Reviewed	87.5
PF06679	163	DUF1180: Protein of unknown function (DUF1180); In	86.5
KOG2325|consensus	488		86.41
PF01528	374	Herpes_glycop: Herpesvirus glycoprotein M; InterPr	85.23
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	85.09
smart00786	196	SHR3_chaperone ER membrane protein SH3. This famil	84.68
PF13974	80	YebO: YebO-like protein	84.57
TIGR00770	430	Dcu anaerobic c4-dicarboxylate membrane transporte	83.89
KOG1479|consensus	406		83.86
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	82.54
PTZ00370	296	STEVOR; Provisional	82.14
TIGR02736	56	cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ	82.04
TIGR00822	265	EII-Sor PTS system, mannose/fructose/sorbose famil	80.6
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	80.54
PF08507	136	COPI_assoc: COPI associated protein; InterPro: IPR	80.52
KOG4332|consensus	454		80.32
COG3202	509	ATP/ADP translocase [Energy production and convers	80.1
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	80.03

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.59  E-value=2.9e-13  Score=132.14  Aligned_cols=194  Identities=13%  Similarity=0.041  Sum_probs=148.8

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhhhHhhhCc-hHHHHHHHHHHHHHHHHHHhcccCCCCcchHHHH-------------
Q psy4795          14 GVSSVGYVMICFGVVNAICSLLFGTLMKFIGR-SPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTI-------------   79 (285)
Q Consensus        14 g~d~~G~il~~~gi~~~~~a~~~G~l~~~~G~-~~~~~~g~~~~~~~l~~fl~~e~~~~~p~l~~~~-------------   79 (285)
                      ..|+.|.++...++.....+...+.   +.++ .+.++..+++..+.+..|..+|.+.++|+.++..             
T Consensus       192 ~~d~~g~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~  268 (495)
T PRK14995        192 PLNLGHALMLIVAILLLVYSAKTAL---KGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMA  268 (495)
T ss_pred             CCChHhHHHHHHHHHHHHHHHHhcc---ccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHH
Confidence            3688888888877777776655433   3333 3455556666666777788888777776544321             


Q ss_pred             ----------hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCC
Q psy4795          80 ----------SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPH  147 (285)
Q Consensus        80 ----------~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~  147 (285)
                                ..+.|.|++...|.  .++|+.+...+++..+++++.|++.||+|||+++..|.++..++...+....+ 
T Consensus       269 ~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~-  347 (495)
T PRK14995        269 MTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDF-  347 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcC-
Confidence                      12347788888887  57999999999999999999999999999999999888887776655444333 


Q ss_pred             CCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         148 PNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       148 ~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      +++.+......++.|+|.|...++......+..|+++ +.+.+.+++.+++|.++|.++.+.+..
T Consensus       348 ~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        348 STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556667888999999999989988888898776 999999999999999999999887644

>KOG3098|consensus

Probab=99.52  E-value=2.3e-13  Score=131.11  Aligned_cols=153  Identities=24%  Similarity=0.322  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhc---ccCChhHHHHHHHHHHHHHHHHHHhCCCCC--------------ChHHHHHH
Q psy4795          95 SVGYVMICFGVVNAICSLLFGTLMK---FIGRSPLMALGFIVHCCLIWILVVWRPHPN--------------NPKIFFTI  157 (285)
Q Consensus        95 ~~G~v~~~~gv~~~i~s~l~G~LsD---riGrk~~i~~g~~l~~i~~~~l~~~~p~~~--------------~~~~~~~~  157 (285)
                      ..++.++..++++.+++...+.++|   |+||++++.++.++|.+..++.....|.+.              +..+..++
T Consensus       280 ~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii  359 (461)
T KOG3098|consen  280 LIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALII  359 (461)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHH
Confidence            5778999999999999999998886   499999999999999999988887777543              35678889


Q ss_pred             HHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4795         158 SGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHM  237 (285)
Q Consensus       158 ~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~~~l~il~~~lv~~~v~~~~~e~~~~  237 (285)
                      .++.|++|+++|++.+.+++..+|+++.++|+++++.|+++.+++++.++....+.+...+.+...++...++.+..+++
T Consensus       360 ~~l~G~~D~~~~t~~~~ii~~~~~~~~~~~fsi~kfyq~~~s~v~~f~~~~~~l~~~~l~~~i~~~i~~~~~~~~~~~~~  439 (461)
T KOG3098|consen  360 GFLLGFGDACFNTQRYVIIALLYPDDRAQAFSLFKFYQSVASCVAFFFSPYLLLYIYTLGLPIFCVIATTIFFIVAERTQ  439 (461)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998998


Q ss_pred             HhHHhhhhhc
Q psy4795         238 MKARRQKRLA  247 (285)
Q Consensus       238 ~~~~~~~~~~  247 (285)
                      .++||+++++
T Consensus       440 ~~~~k~~~~~  449 (461)
T KOG3098|consen  440 AMEKKLTEEK  449 (461)
T ss_pred             HHHHhhhhhh
Confidence            8888777655

>PRK10504 putative transporter; Provisional

Probab=99.49  E-value=3.5e-12  Score=122.92  Aligned_cols=127  Identities=11%  Similarity=0.056  Sum_probs=101.2

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISG  159 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~  159 (285)
                      +.|.|.+...|.  ...|+.+....++..++.++.|+++||+|||+++..+.++..+...++.. .+..++.+...+..+
T Consensus       283 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  361 (471)
T PRK10504        283 MTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFML-VALLGWYYLLPFVLF  361 (471)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHh-ccccccHHHHHHHHH
Confidence            457787776776  47888899999999999999999999999999999888876666554433 222334444445567


Q ss_pred             HHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         160 LWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       160 l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                      +.|++.+...+..+++..+.+|++. +.+++.+++.+++|+++|..+.+.+
T Consensus       362 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l  412 (471)
T PRK10504        362 LQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL  412 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888888888888899999998765 9999999999999999999887765

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.47  E-value=4.1e-12  Score=122.87  Aligned_cols=147  Identities=12%  Similarity=0.156  Sum_probs=101.9

Q ss_pred             hhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcc--cCChhHHHHHH--HHHHHHHHHHHHhCCCCCChHHHHH
Q psy4795          83 WGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKF--IGRSPLMALGF--IVHCCLIWILVVWRPHPNNPKIFFT  156 (285)
Q Consensus        83 t~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDr--iGrk~~i~~g~--~l~~i~~~~l~~~~p~~~~~~~~~~  156 (285)
                      .|.|.++ .|.  .+.|+++.+.+++..+++++.|+++||  +++++...++.  +...++.+....    .++.+.+++
T Consensus       264 l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~----~~~~~~~~i  338 (455)
T TIGR00892       264 LVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL----AGDYTGLVI  338 (455)
T ss_pred             HHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH----hchHHHHHH
Confidence            3556654 465  578899999999999999999999997  33443333333  222222222211    345666777


Q ss_pred             HHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHH-----HHHHHHHHHHHHHHHHHH
Q psy4795         157 ISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCAR-----MKLYVMGVVLVTGFCGYV  230 (285)
Q Consensus       157 ~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~-----~~l~il~~~lv~~~v~~~  230 (285)
                      ..+++|++.+..++..++++.+.+|+++ +.+.++++..+++|..+|..+.+.+...     +-.++..++.+++.+ +.
T Consensus       339 ~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~-~~  417 (455)
T TIGR00892       339 YCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL-FL  417 (455)
T ss_pred             HHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH-HH
Confidence            7889999999999999999999998766 9999999999999999999998876432     234444444444443 44


Q ss_pred             HHHHH
Q psy4795         231 IVEVR  235 (285)
Q Consensus       231 ~~e~~  235 (285)
                      ..+..
T Consensus       418 ~~~~~  422 (455)
T TIGR00892       418 AIGNY  422 (455)
T ss_pred             HHHHH
Confidence            44443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.46  E-value=2.3e-11  Score=115.28  Aligned_cols=192  Identities=15%  Similarity=0.144  Sum_probs=143.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHHHHHhccc-C-CC-Cc-c---------------hHHH
Q psy4795          18 VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRP-H-PN-NP-K---------------IFFT   78 (285)
Q Consensus        18 ~G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~~fl~~e~-~-~~-~p-~---------------l~~~   78 (285)
                      +|.++....+++.++.++...+.+.+|||..+..-..+.++.+.....+-| + .+ .+ .               ..+.
T Consensus       139 iaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~~~~~~~~~~~~~~~l~~p~v~~~l~  218 (394)
T COG2814         139 LALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRTLLRLLRRPGVLLGLL  218 (394)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCcchhHHHHHhcCchHHHHHH
Confidence            567788888889999999999999999987776656666665444444434 1 11 11 0               1111


Q ss_pred             H-----------hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhC
Q psy4795          79 I-----------SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWR  145 (285)
Q Consensus        79 ~-----------~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~  145 (285)
                      .           ..|..-|+++.-|.  +.+++++..+|++..+|+.++|+++|| +.++.+.....++.+..+.+.++ 
T Consensus       219 ~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~-  296 (394)
T COG2814         219 ATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFT-  296 (394)
T ss_pred             HHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHh-
Confidence            1           12345567777776  578899999999999999999999999 88888888877777766665443 


Q ss_pred             CCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy4795         146 PHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCARM  213 (285)
Q Consensus       146 p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~~  213 (285)
                        +++.+......++||+..+.-......-+.+..|++.+.+.|++.-..|+|.++|..+++.+..+.
T Consensus       297 --~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~  362 (394)
T COG2814         297 --GASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDAL  362 (394)
T ss_pred             --cchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence              345577777788899988777766677777766788899999999999999999999999987663

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.45  E-value=5.8e-12  Score=121.16  Aligned_cols=194  Identities=17%  Similarity=0.187  Sum_probs=143.3

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhhhHhhhCc-h-HHHHHHHHHHHHHHHHHHhcccCCCCcchHHH-------------
Q psy4795          14 GVSSVGYVMICFGVVNAICSLLFGTLMKFIGR-S-PLMALGFIVHCCLIWILVVWRPHPNNPKIFFT-------------   78 (285)
Q Consensus        14 g~d~~G~il~~~gi~~~~~a~~~G~l~~~~G~-~-~~~~~g~~~~~~~l~~fl~~e~~~~~p~l~~~-------------   78 (285)
                      ..|+.|..+...+..........|.   +.++ + ..+..........+..+..+|.+.++|.....             
T Consensus       187 ~~d~~g~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (485)
T TIGR00711       187 NFDFLGLLLLSVGLGSLLYGLSEGP---ERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVY  263 (485)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhhCC---CCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHH
Confidence            4788888888888877777666665   5565 3 34444444455555566666655444432211             


Q ss_pred             ----------Hhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHH-HhC
Q psy4795          79 ----------ISGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILV-VWR  145 (285)
Q Consensus        79 ----------~~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~-~~~  145 (285)
                                ...+.|.|+++.+|.  .+.|+.+...+++..+++++.|++.||+|||+++..+..+..++...+. ...
T Consensus       264 ~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~  343 (485)
T TIGR00711       264 MSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT  343 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC
Confidence                      122458888888887  4789999999999999999999999999999999988887777665544 223


Q ss_pred             CCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         146 PHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       146 p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      + +.+.+.......+.|++.+...++......+.+|+++ +.+.+++++.+++|.++|..+.+.+..
T Consensus       344 ~-~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       344 P-DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3 3445566666788999999988888887778888665 999999999999999999988776544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.45  E-value=3.3e-12  Score=123.62  Aligned_cols=129  Identities=16%  Similarity=0.136  Sum_probs=94.6

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISG  159 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~  159 (285)
                      +.|.|+++.+|.  .++|+++...+++..++++++|+++||+|||+++..+..+..+..+++.. .+ .++.+......+
T Consensus       297 ~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~  374 (496)
T PRK03893        297 LLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFA-IG-GANVWVLGLLLF  374 (496)
T ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh-cc-ccHHHHHHHHHH
Confidence            457888777776  57899999999999999999999999999999988877665554433322 22 233333434344


Q ss_pred             HHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795         160 LWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       160 l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~  212 (285)
                      +.+.......+..++++.+.+|+++ +.++++++...++|..+|..+++.+..+
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~  428 (496)
T PRK03893        375 FQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQR  428 (496)
T ss_pred             HHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhcc
Confidence            4443333344566778889998765 9999999999999999999998877543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.43  E-value=2.5e-11  Score=118.34  Aligned_cols=127  Identities=17%  Similarity=0.166  Sum_probs=86.7

Q ss_pred             hhhhhhhhccchh--HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q psy4795          82 LWGAYISCALGVS--SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISG  159 (285)
Q Consensus        82 ft~~Y~~~~lg~~--~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~  159 (285)
                      |.|.|+++.+|.+  ..++......++..++++++|+++||+|||+.+..+.+...+...+++.... .++...+++..+
T Consensus       272 ~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  350 (490)
T PRK10642        272 YMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILIN-SNVIGLIFAGLL  350 (490)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHH
Confidence            4577887777773  4567777888999999999999999999999988877643333333222221 234455555566


Q ss_pred             HHHHhhhhhhcccccceeeeccccc-hhHhHH-HHHHHHHHHHHHHHHhhhhh
Q psy4795         160 LWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSN-FRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       160 l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~-~~l~~~lG~~ig~~~s~~l~  210 (285)
                      +.|++.+...+..++.+.+.+|++. +.+.+. +++.+..| .++..+.+.+.
T Consensus       351 ~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g-~~~p~i~g~l~  402 (490)
T PRK10642        351 MLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVA-GLTPTLAAWLV  402 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            6777766677777788888999876 888884 67765554 45555555543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.43  E-value=3.8e-11  Score=114.06  Aligned_cols=190  Identities=16%  Similarity=0.046  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHHHHHhc-ccCC-----CCc---------------chHHH
Q psy4795          20 YVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW-RPHP-----NNP---------------KIFFT   78 (285)
Q Consensus        20 ~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~~fl~~-e~~~-----~~p---------------~l~~~   78 (285)
                      .......++..++..+.|.+....|++..++...+..++..+..+.. ++++     +++               .....
T Consensus       150 ~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (417)
T PRK10489        150 ITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPPQPREHPLRSLLAGFRFLLASPVVGGI  229 (417)
T ss_pred             HHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccccchHHHHHHHHHHHcChHHHHH
Confidence            44455666777777888888888887644444443333332222222 2111     011               10000


Q ss_pred             --H----------hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHh
Q psy4795          79 --I----------SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW  144 (285)
Q Consensus        79 --~----------~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~  144 (285)
                        .          ..+.|.|.++.+|.  ...|++....+++..+++++.|++.||.++++.+..+.+...++.+.+.. 
T Consensus       230 ~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~-  308 (417)
T PRK10489        230 ALLGGLLTMASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGL-  308 (417)
T ss_pred             HHHHHHHHHHHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHc-
Confidence              0          11336777776776  46889999999999999999999999988887887777766655544322 


Q ss_pred             CCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy4795         145 RPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARM  213 (285)
Q Consensus       145 ~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~  213 (285)
                         .++.+...+..+++|++.+...+..++++.+.+|++. ++++++++..+++|..+|..+.+.+....
T Consensus       309 ---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~  375 (417)
T PRK10489        309 ---MPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM  375 (417)
T ss_pred             ---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh
Confidence               2345566677888899998888888889999999875 99999999999999999999998887653

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.42  E-value=1.8e-12  Score=126.36  Aligned_cols=155  Identities=17%  Similarity=0.286  Sum_probs=120.6

Q ss_pred             hHHHHhhhhhhhhhhc--cch--hHHHHHHHHHHHHHHHHHhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHHhCCCCC
Q psy4795          75 IFFTISGLWGAYISCA--LGV--SSVGYVMICFGVVNAICSLLFGTLMKF-IGRSPLMALGFIVHCCLIWILVVWRPHPN  149 (285)
Q Consensus        75 l~~~~~~ft~~Y~~~~--lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDr-iGrk~~i~~g~~l~~i~~~~l~~~~p~~~  149 (285)
                      -.|....+.|.|+++.  +|.  .+.|.++..+.++..++++++|+++|| +|||+++.++.++..++.+.+..    .+
T Consensus        25 ~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~----~~  100 (475)
T TIGR00924        25 SYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAM----SI  100 (475)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh----cc
Confidence            3344556778888876  777  579999999999999999999999999 89999999999988887765543    23


Q ss_pred             ChHHHHHHHHHHHHhhhhhhcccccceeeecccc----chhHhHHHHHHHHHHHHHHHHHhhhhhHH--H--HHHHHHHH
Q psy4795         150 NPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRN----KEAAFSNFRLWESVGFVIAYAYSTHLCAR--M--KLYVMGVV  221 (285)
Q Consensus       150 ~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~----~~~afs~~~l~~~lG~~ig~~~s~~l~~~--~--~l~il~~~  221 (285)
                      +++.+++...+.|+|.|.+.+..++++++.+|++    ++.+++.++...|+|.++|..+++.+..+  +  -.++..+.
T Consensus       101 ~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~  180 (475)
T TIGR00924       101 YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVG  180 (475)
T ss_pred             cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            4556666777899999999999999999999753    47799999999999999999999887542  2  23343444


Q ss_pred             HHHHHHHHHHHH
Q psy4795         222 LVTGFCGYVIVE  233 (285)
Q Consensus       222 lv~~~v~~~~~e  233 (285)
                      .+++.+.+....
T Consensus       181 ~~~~~l~~~~~~  192 (475)
T TIGR00924       181 MVIGLLTFFAGR  192 (475)
T ss_pred             HHHHHHHHHHcc
Confidence            445555554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.41  E-value=1.4e-12  Score=119.92  Aligned_cols=122  Identities=16%  Similarity=0.208  Sum_probs=105.0

Q ss_pred             hhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q psy4795          85 AYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWG  162 (285)
Q Consensus        85 ~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~G  162 (285)
                      .++++.+|.  .+.|++...+.++..+++++.|+++||+|||+++..+.++..++.....+    .++++.+++..++.|
T Consensus        18 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~g   93 (399)
T TIGR00893        18 PMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAF----AGAYVSLYILRVLLG   93 (399)
T ss_pred             HHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHH----HcCHHHHHHHHHHHH
Confidence            345666776  57899999999999999999999999999999999998887776655544    236788888899999


Q ss_pred             Hhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         163 VGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       163 ig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      ++.+...+..++++.+.+|+++ +.+.+..+...++|..++..+++.+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  142 (399)
T TIGR00893        94 AAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL  142 (399)
T ss_pred             HHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            9999999999999999998755 99999999999999999998887654

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.41  E-value=7.1e-11  Score=111.64  Aligned_cols=190  Identities=13%  Similarity=0.110  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHH-HHHHHhcc-cCCCC--------------c--chHHHH-
Q psy4795          19 GYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCL-IWILVVWR-PHPNN--------------P--KIFFTI-   79 (285)
Q Consensus        19 G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~-l~~fl~~e-~~~~~--------------p--~l~~~~-   79 (285)
                      |.......++..++.+..|.+.+++|+|..++...+..++. +...+..+ ++++.              +  ...+.. 
T Consensus       146 ~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (393)
T PRK15011        146 SFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLATGTLEAPRRNRRDTLLLFVIC  225 (393)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccccccccccccccHHHHHHHH
Confidence            34445567888888899899988999986665544444433 32222222 11110              0  101000 


Q ss_pred             ----------hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCC
Q psy4795          80 ----------SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPH  147 (285)
Q Consensus        80 ----------~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~  147 (285)
                                ..+.|.|+++.+|.  .+.|.+.....++.+++.++.|+++||+|||+.+..+.+...+....+..    
T Consensus       226 ~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~----  301 (393)
T PRK15011        226 TLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLM----  301 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH----
Confidence                      12357788887777  46777777777788889999999999999999887776554443322221    


Q ss_pred             CCChHHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795         148 PNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       148 ~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~  212 (285)
                      .++++...+..++.+++.|...+..+....+.+|++++.+.+.++...++|..+|..+++.+..+
T Consensus       302 ~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~  366 (393)
T PRK15011        302 AHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEI  366 (393)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22344444555555566665555556667788898889999999999999999999999887654

>PRK03545 putative arabinose transporter; Provisional

Probab=99.40  E-value=6.9e-11  Score=111.31  Aligned_cols=207  Identities=11%  Similarity=0.105  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHH-HHHHhccc-CCC--C-----------cch--HHHH--
Q psy4795          19 GYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLI-WILVVWRP-HPN--N-----------PKI--FFTI--   79 (285)
Q Consensus        19 G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l-~~fl~~e~-~~~--~-----------p~l--~~~~--   79 (285)
                      |......+++..++.++.+.+.+++|++..+....++.++.. ..+...++ +++  +           +..  .+..  
T Consensus       136 g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (390)
T PRK03545        136 SLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSEHSGSLKSLPLLFRRPALVSLYLLTV  215 (390)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHhCcHHHHHHHHHH
Confidence            344555666777777777888888999766555444444432 22222221 111  1           100  0000  


Q ss_pred             ---------hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCC
Q psy4795          80 ---------SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHP  148 (285)
Q Consensus        80 ---------~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~  148 (285)
                               ..+.+.|+++..|.  ...++.+...+++..+++++.|+++||+|||++. .+..+...+...+...   .
T Consensus       216 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~---~  291 (390)
T PRK03545        216 VVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPA---A  291 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHH---h
Confidence                     11235566666676  4688899999999999999999999999988654 4444333333332222   2


Q ss_pred             CChHHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHHHH
Q psy4795         149 NNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR----MKLYVMGVVLVT  224 (285)
Q Consensus       149 ~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~----~~l~il~~~lv~  224 (285)
                      ++.+...+..+++|++.+...+..++.+.+..|++++.+.+.++..+++|..+|...++.+..+    .-.++...+.++
T Consensus       292 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~  371 (390)
T PRK03545        292 NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALA  371 (390)
T ss_pred             chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence            3456667778889998887777777888888888779999999999999999999998886643    334444444455


Q ss_pred             HHHHH
Q psy4795         225 GFCGY  229 (285)
Q Consensus       225 ~~v~~  229 (285)
                      +.+.+
T Consensus       372 ~~~~~  376 (390)
T PRK03545        372 ALVWS  376 (390)
T ss_pred             HHHHH
Confidence            44443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.40  E-value=7.2e-11  Score=111.66  Aligned_cols=130  Identities=9%  Similarity=-0.015  Sum_probs=99.6

Q ss_pred             hhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhC-CCCCChHHHHHHHH
Q psy4795          83 WGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWR-PHPNNPKIFFTISG  159 (285)
Q Consensus        83 t~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~-p~~~~~~~~~~~~~  159 (285)
                      .|.|+.+.+|.  .+.|+......++..+++++.|+++||+|||+.+..+.++..++...+.... +.+++.+..++...
T Consensus       238 ~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  317 (406)
T PRK15402        238 SPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLS  317 (406)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence            36677776777  4577777777888999999999999999999999988877766655443321 22344556667788


Q ss_pred             HHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795         160 LWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       160 l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~  212 (285)
                      +.|++.+...+..+.......|++++++.+.+++.+.+|..+|..+.+.+...
T Consensus       318 ~~g~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~  370 (406)
T PRK15402        318 LYAFGIGLANAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG  370 (406)
T ss_pred             HHHHHHHHHhhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            89999988887776665544555669999999999999999999999887554

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.39  E-value=5.6e-12  Score=123.45  Aligned_cols=156  Identities=16%  Similarity=0.271  Sum_probs=120.6

Q ss_pred             chHHHHhhhhhhhhhhccchh--HHHHHHHHHHHHHHHHHhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy4795          74 KIFFTISGLWGAYISCALGVS--SVGYVMICFGVVNAICSLLFGTLMKF-IGRSPLMALGFIVHCCLIWILVVWRPHPNN  150 (285)
Q Consensus        74 ~l~~~~~~ft~~Y~~~~lg~~--~~G~v~~~~gv~~~i~s~l~G~LsDr-iGrk~~i~~g~~l~~i~~~~l~~~~p~~~~  150 (285)
                      .-.|....+.+.|+++.+|.+  ..+++...+.....+..+++|+++|| +|||+++..|.++..++.+++.+..   +.
T Consensus        28 ~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~---~~  104 (489)
T PRK10207         28 FGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL---LK  104 (489)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc---cc
Confidence            455666777889999989883  56688888888888889999999999 9999999999999888877665521   22


Q ss_pred             hHHHHHHHHHHHHhhhhhhcccccceeeeccccc---hhHhHHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHHH
Q psy4795         151 PKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK---EAAFSNFRLWESVGFVIAYAYSTHLCAR----MKLYVMGVVLV  223 (285)
Q Consensus       151 ~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~---~~afs~~~l~~~lG~~ig~~~s~~l~~~----~~l~il~~~lv  223 (285)
                      ...+++...+.|+|.|...+..++++++.||+++   +.+++.+++..|+|.++|..+++.+..+    +-.++..+..+
T Consensus       105 ~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~  184 (489)
T PRK10207        105 PDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLI  184 (489)
T ss_pred             hhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence            2345566788899999999999999999998653   5689999999999999999999887543    22333333344


Q ss_pred             HHHHHHHHH
Q psy4795         224 TGFCGYVIV  232 (285)
Q Consensus       224 ~~~v~~~~~  232 (285)
                      ++.+.+.+.
T Consensus       185 ~~~~~~~~~  193 (489)
T PRK10207        185 IALLVYFAC  193 (489)
T ss_pred             HHHHHHHHc
Confidence            555555554

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.38  E-value=3.5e-12  Score=116.53  Aligned_cols=140  Identities=19%  Similarity=0.301  Sum_probs=112.6

Q ss_pred             hhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q psy4795          84 GAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLW  161 (285)
Q Consensus        84 ~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~  161 (285)
                      |.++.+.+|.  .++|++...+.++..+++++.|+++||+|||+++..+.++..++.+...+.    ++.+.+++..++.
T Consensus        20 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~   95 (352)
T PF07690_consen   20 PLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA----SNFWLLLIARFLL   95 (352)
T ss_dssp             H-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH----CCHHHHHHHHHHH
T ss_pred             HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh----hhHHHHhhhcccc
Confidence            3366677776  579999999999999999999999999999999999999888884443331    3456888889999


Q ss_pred             HHhhhhhhcccccceeeecccc-chhHhHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHH
Q psy4795         162 GVGDAVWQTQVNGLYGTLFRRN-KEAAFSNFRLWESVGFVIAYAYSTHLCA----RMKLYVMGVVLVTGFC  227 (285)
Q Consensus       162 Gig~g~~~~~~~ali~~~fp~~-~~~afs~~~l~~~lG~~ig~~~s~~l~~----~~~l~il~~~lv~~~v  227 (285)
                      |++.+...+..++++.+.+|++ ++.+++..+...++|..+|..+++.+..    ++-.++..++.++..+
T Consensus        96 g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~i  166 (352)
T PF07690_consen   96 GIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAI  166 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhh
Confidence            9999999999999999999884 5999999999999999999999988762    2234445554444444

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.37  E-value=8.6e-11  Score=110.62  Aligned_cols=124  Identities=16%  Similarity=0.212  Sum_probs=95.9

Q ss_pred             hhhhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q psy4795          83 WGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWG  162 (285)
Q Consensus        83 t~~Y~~~~lg~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~G  162 (285)
                      .+.|..+ .|.+..++....++++..++.++.|++.||+|||+.+..+..+..++...+..    .++.+..++..++.|
T Consensus       239 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~G  313 (399)
T PRK05122        239 ITLYYAA-RGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWL----APSPWMALIGAALTG  313 (399)
T ss_pred             HHHHHHH-cccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHH
Confidence            3555543 35556677778889999999999999999999999988887776666544433    234556666778899


Q ss_pred             Hhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         163 VGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       163 ig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      ++.+..++.......+.+|+++ +++.++++...++|..++..+.+.+..
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  363 (399)
T PRK05122        314 FGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVAS  363 (399)
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998888877777788887665 999999999999999888777777654

>PRK10054 putative transporter; Provisional

Probab=99.36  E-value=1.1e-11  Score=117.65  Aligned_cols=127  Identities=17%  Similarity=0.227  Sum_probs=104.8

Q ss_pred             hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHH
Q psy4795          80 SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTI  157 (285)
Q Consensus        80 ~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~  157 (285)
                      ..+.|.|+++.+|.  .++|+++..+.++..+++++.|+++||+|||+++.++.++..++.+.+.+    .++.+..++.
T Consensus        27 ~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  102 (395)
T PRK10054         27 LPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPL----VNNVTLVVLF  102 (395)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHH----HhHHHHHHHH
Confidence            34567788888887  57999999999999999999999999999999999988877766654433    2345666666


Q ss_pred             HHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         158 SGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       158 ~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      ..+.|.+.+.+.+..++...+.+|+++ +.+++.++...|+|.++|..+++.+.
T Consensus       103 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~  156 (395)
T PRK10054        103 FALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV  156 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667788888888888889999997765 99999999999999999999988864

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.36  E-value=1.4e-11  Score=117.02  Aligned_cols=128  Identities=18%  Similarity=0.257  Sum_probs=110.9

Q ss_pred             Hhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHH
Q psy4795          79 ISGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFT  156 (285)
Q Consensus        79 ~~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~  156 (285)
                      ...+.+.|+++.+|.  .++|+...+..+...+.+++.|+++||+|||+++..+.++..++.+.+..    .++++.+++
T Consensus        29 ~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~----~~~~~~l~~  104 (400)
T PRK11646         29 VFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAI----AHEPWLLWL  104 (400)
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH----hccHHHHHH
Confidence            345667788888887  58999999999999999999999999999999999999988887766544    245677788


Q ss_pred             HHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         157 ISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       157 ~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      ..++.|++.+.++++.++++.+.+|+++ +.+.+.++...++|..+|..+++.+.
T Consensus       105 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~  159 (400)
T PRK11646        105 SCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL  159 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999998765 99999999999999999999988875

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.36  E-value=1.8e-12  Score=119.28  Aligned_cols=120  Identities=13%  Similarity=0.186  Sum_probs=102.2

Q ss_pred             hhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q psy4795          86 YISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGV  163 (285)
Q Consensus        86 Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gi  163 (285)
                      ++++.+|.  .+.|++.....++..+++++.|+++||+|||+++..+.++..++.+.....    ++.+.+++..++.|+
T Consensus        20 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~   95 (379)
T TIGR00881        20 YLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS----TSLWVMAALWALNGI   95 (379)
T ss_pred             HHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHh
Confidence            55666776  578999999999999999999999999999999999998887777665442    356788888999999


Q ss_pred             hhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHH-HHhhhh
Q psy4795         164 GDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAY-AYSTHL  209 (285)
Q Consensus       164 g~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~-~~s~~l  209 (285)
                      +.+...+..++++.+.+|+++ +.+.+..+...++|..++. ..+..+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  143 (379)
T TIGR00881        96 FQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGI  143 (379)
T ss_pred             hccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHH
Confidence            999999999999999998765 8999999999999999998 455444

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.36  E-value=1.4e-10  Score=109.05  Aligned_cols=189  Identities=18%  Similarity=0.178  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHH-HHHHHH-hcccC-C--C--------------Cc--chHH
Q psy4795          19 GYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCC-LIWILV-VWRPH-P--N--------------NP--KIFF   77 (285)
Q Consensus        19 G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~-~l~~fl-~~e~~-~--~--------------~p--~l~~   77 (285)
                      |.......++..+..+..|.+.+..|++..+....++.++ .+..++ ..|++ +  +              ++  ...+
T Consensus       145 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (408)
T PRK09874        145 GTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEMLHMREVVTSLKNPKLVLSL  224 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhHHHHHHHhCcCCchHHHH
Confidence            3444555566677777888888888987544433333332 222222 22211 1  0              01  1111


Q ss_pred             HH------------hhhhhhhhhhccch-h----HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHH
Q psy4795          78 TI------------SGLWGAYISCALGV-S----SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWI  140 (285)
Q Consensus        78 ~~------------~~ft~~Y~~~~lg~-~----~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~  140 (285)
                      ..            ..+.+.|..+..+. .    ..|.+..+.+++..++.++.|+++||+|||+.+..+.....++.++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~  304 (408)
T PRK09874        225 FVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIP  304 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Confidence            10            01224555543332 2    2455666778889999999999999999999998888776655544


Q ss_pred             HHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         141 LVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       141 l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      ...    .++.+..++..+++|++.+...+..++.+.+..|+++ +..++.++..+++|..+|..+++.+..
T Consensus       305 ~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~  372 (408)
T PRK09874        305 MSF----VQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA  372 (408)
T ss_pred             HHH----hccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHh
Confidence            333    2345667777888999999999998888888887665 999999999999999999999888754

>TIGR00895 2A0115 benzoate transport

Probab=99.36  E-value=7.8e-12  Score=115.91  Aligned_cols=120  Identities=17%  Similarity=0.229  Sum_probs=101.7

Q ss_pred             hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhh
Q psy4795          88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGD  165 (285)
Q Consensus        88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~  165 (285)
                      .+.+|.  .+.|++.....++..+++++.|+++||+|||+.+..+.++..++.+....    .++.+.+++..++.|++.
T Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~  119 (398)
T TIGR00895        44 SAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCAL----ATNVTQLLILRFLAGLGL  119 (398)
T ss_pred             hhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH----ccchHHHHHHHHHHhccc
Confidence            344565  57889999999999999999999999999999999998887776655443    245677778889999999


Q ss_pred             hhhhcccccceeeecccc-chhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         166 AVWQTQVNGLYGTLFRRN-KEAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       166 g~~~~~~~ali~~~fp~~-~~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      +...+..++++.+.+|++ ++.+.+.++...++|..++..+++.+..
T Consensus       120 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  166 (398)
T TIGR00895       120 GGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP  166 (398)
T ss_pred             ccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh
Confidence            999999999999999865 4999999999999999999998877643

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.35  E-value=9.2e-11  Score=110.56  Aligned_cols=124  Identities=17%  Similarity=0.110  Sum_probs=98.0

Q ss_pred             hhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q psy4795          83 WGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGL  160 (285)
Q Consensus        83 t~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l  160 (285)
                      .|.|.++ .|.  .+.+......+++..+++++.|+++||+|||+.+..+.+...++...+..    .++.+...+..++
T Consensus       243 ~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  317 (406)
T PRK11551        243 LPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAA----APSFAGMLLAGFA  317 (406)
T ss_pred             HHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh----cCcHHHHHHHHHH
Confidence            3556554 465  46888999999999999999999999999999988766655554433322    2244556666778


Q ss_pred             HHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         161 WGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       161 ~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      .|++.+..++..+++..+.+|++. +.+.+..+...++|..+|..+.+.+..
T Consensus       318 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  369 (406)
T PRK11551        318 AGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA  369 (406)
T ss_pred             HHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence            888888888888899999998776 999999999999999999999888743

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.35  E-value=3.6e-11  Score=110.18  Aligned_cols=118  Identities=14%  Similarity=0.131  Sum_probs=100.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhC-CCCCChHHHHHHHHHHHHhhhhhhccc
Q psy4795          94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWR-PHPNNPKIFFTISGLWGVGDAVWQTQV  172 (285)
Q Consensus        94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~-p~~~~~~~~~~~~~l~Gig~g~~~~~~  172 (285)
                      .++|++...+.++..+++++.|+++||+|||+++..+.++..++........ ..+.+.+.+++..++.|++.+...+..
T Consensus        34 ~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  113 (365)
T TIGR00900        34 SVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAY  113 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999998887666554433221 112467888888999999999999999


Q ss_pred             ccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         173 NGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       173 ~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      ++++.+.+|+++ +.+++.++...++|..+|..+++.+..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~  153 (365)
T TIGR00900       114 QAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA  153 (365)
T ss_pred             HHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998765 999999999999999999999888753

>PRK03699 putative transporter; Provisional

Probab=99.35  E-value=3.4e-10  Score=106.95  Aligned_cols=149  Identities=11%  Similarity=0.163  Sum_probs=105.7

Q ss_pred             hhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q psy4795          81 GLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTIS  158 (285)
Q Consensus        81 ~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~  158 (285)
                      .|.|.|+++.+|.  .+.+.+...+.++..++.+++|+++||+|||+.+.....+..+....+. ..   ++.+...+..
T Consensus       226 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~~---~~~~~~~~~~  301 (394)
T PRK03699        226 SWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFV-NT---DDPSHLLYAI  301 (394)
T ss_pred             HHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH-Hc---CCchHHHHHH
Confidence            3568899887777  4688888899999999999999999999999988876665554433322 22   2334445557


Q ss_pred             HHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHHHHHHHHHHHHH
Q psy4795         159 GLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR----MKLYVMGVVLVTGFCGYVIVE  233 (285)
Q Consensus       159 ~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~----~~l~il~~~lv~~~v~~~~~e  233 (285)
                      +++|++.+...+...+...+..|++++...+......++|..++..+.+.+...    .-.++..++.++..+....+-
T Consensus       302 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (394)
T PRK03699        302 LGLGFFSSAIYTTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLG  380 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHH
Confidence            788888777777777777777776667777877888899999999888776543    334444555555554444443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.34  E-value=9.2e-11  Score=113.55  Aligned_cols=151  Identities=13%  Similarity=0.039  Sum_probs=99.9

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISG  159 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~  159 (285)
                      +.|.|+++.+|.  .+.++.+....++..++++++|+++||+|||+.+..+.....+....+....  .++.+..++..+
T Consensus       280 ~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  357 (467)
T PRK09556        280 WSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQH--ATSEYMYLASLF  357 (467)
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHh--cCcHHHHHHHHH
Confidence            458899888887  4678888899999999999999999999999877665444333322222221  334455555566


Q ss_pred             HHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHH-HHHHHHHHhhhhhH----------------HHHHHHHHHH
Q psy4795         160 LWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESV-GFVIAYAYSTHLCA----------------RMKLYVMGVV  221 (285)
Q Consensus       160 l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~l-G~~ig~~~s~~l~~----------------~~~l~il~~~  221 (285)
                      +.|++.............+.+|++. +.+.++.+...++ |.+++..+.+.+..                +.-.+++.++
T Consensus       358 ~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~  437 (467)
T PRK09556        358 ALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIA  437 (467)
T ss_pred             HHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHH
Confidence            6675432222233355668899876 9999999999997 65666555555433                2234455555


Q ss_pred             HHHHHHHHHHHHH
Q psy4795         222 LVTGFCGYVIVEV  234 (285)
Q Consensus       222 lv~~~v~~~~~e~  234 (285)
                      .+++.+.+..+..
T Consensus       438 ~~~~~~~~~~~~~  450 (467)
T PRK09556        438 AIGCICLMAIVAV  450 (467)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666665543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.34  E-value=2.4e-11  Score=113.20  Aligned_cols=120  Identities=13%  Similarity=0.060  Sum_probs=102.7

Q ss_pred             hhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHh
Q psy4795          87 ISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVG  164 (285)
Q Consensus        87 ~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig  164 (285)
                      +++.+|.  .++|++...+.++..+++++.|+++||+|||+++..+.++..++.+...+    .++++..++..++.|++
T Consensus        38 l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~l~G~~  113 (405)
T TIGR00891        38 VAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGF----APGYITMFIARLVIGIG  113 (405)
T ss_pred             HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHhh
Confidence            3455666  57899999999999999999999999999999999998887776655444    34677888889999999


Q ss_pred             hhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         165 DAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       165 ~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      .+...+...+++.+.+|+++ +.+.+.++...++|..++..+++.+.
T Consensus       114 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~  160 (405)
T TIGR00891       114 MGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVV  160 (405)
T ss_pred             hhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998665 99999999999999999998877654

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.34  E-value=1.7e-10  Score=106.86  Aligned_cols=207  Identities=16%  Similarity=0.082  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHH-HHHHH-hcccCCC---------------Cc-ch-HHHH
Q psy4795          19 GYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCL-IWILV-VWRPHPN---------------NP-KI-FFTI   79 (285)
Q Consensus        19 G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~-l~~fl-~~e~~~~---------------~p-~l-~~~~   79 (285)
                      |......+++..++.+..|.+.+.+|++..++...+..++. +..+. ..|++++               ++ .. .+..
T Consensus       128 ~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (375)
T TIGR00899       128 SVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGALTRLEVRGLLASRDTRLLFVA  207 (375)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccccCcchhhhhhcCcchHHHHHH
Confidence            33344456777788888888888899986666554444433 22222 2221110               00 00 0000


Q ss_pred             -----------hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCC
Q psy4795          80 -----------SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRP  146 (285)
Q Consensus        80 -----------~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p  146 (285)
                                 ..+.|.|+++.+|.  .+.|..+........++.++.|+++||+|||+++..+.+...+.......   
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~---  284 (375)
T TIGR00899       208 CTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAA---  284 (375)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHH---
Confidence                       01236777777776  46777777777788888999999999999999988776654443332222   


Q ss_pred             CCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHH
Q psy4795         147 HPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR----MKLYVMGVVL  222 (285)
Q Consensus       147 ~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~----~~l~il~~~l  222 (285)
                       .++.+..+....+.|++.+..++..+....+..|++++.+.+.++...++|..++..+++.+...    .-.++..++.
T Consensus       285 -~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~  363 (375)
T TIGR00899       285 -DNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVML  363 (375)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence             22345566667788888888888788888888888879999999999999999999998876543    2233334444


Q ss_pred             HHHHHHH
Q psy4795         223 VTGFCGY  229 (285)
Q Consensus       223 v~~~v~~  229 (285)
                      +++.+.+
T Consensus       364 ~~~~~~~  370 (375)
T TIGR00899       364 IVALFCL  370 (375)
T ss_pred             HHHHHHH
Confidence            4444443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.34  E-value=8.6e-12  Score=119.00  Aligned_cols=121  Identities=15%  Similarity=0.187  Sum_probs=104.7

Q ss_pred             hhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q psy4795          86 YISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGV  163 (285)
Q Consensus        86 Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gi  163 (285)
                      .+++.+|.  .+.|++...+.++..+++++.|+++||+|||+++..+.++..++.+...+    .++++.+++..++.|+
T Consensus        33 ~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~  108 (412)
T TIGR02332        33 TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMF----ATGPESLYLLRILVGI  108 (412)
T ss_pred             hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHH
Confidence            56677776  57899999999999999999999999999999999999888877766544    3456778888999999


Q ss_pred             hhhhhhcccccceeeecccc-chhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         164 GDAVWQTQVNGLYGTLFRRN-KEAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       164 g~g~~~~~~~ali~~~fp~~-~~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      +.+...+...+++.+.+|++ ++.+.+.++...++|..++..+++.+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~  156 (412)
T TIGR02332       109 AEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYIL  156 (412)
T ss_pred             HHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888999999875 599999999999999999999987763

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.34  E-value=7.6e-11  Score=106.93  Aligned_cols=206  Identities=18%  Similarity=0.198  Sum_probs=145.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHHHHHhcccCCCCcchHHH--------Hhhhhhhhhhhc
Q psy4795          19 GYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFT--------ISGLWGAYISCA   90 (285)
Q Consensus        19 G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~~fl~~e~~~~~p~l~~~--------~~~ft~~Y~~~~   90 (285)
                      |.......++..++....+.+.+..+++...+...+..++..+......|+.-...+...        ...+.|.|..+.
T Consensus       126 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (352)
T cd06174         126 GLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEV  205 (352)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            455566777888888888888888888655554444444432222222211100000000        022446777775


Q ss_pred             cch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChh-HHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhh
Q psy4795          91 LGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSP-LMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAV  167 (285)
Q Consensus        91 lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~-~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~  167 (285)
                      .|.  .+.++.....+++..+++++.|+++||+|||+ .+..+..+..++.+.....    ++.+..++...+.|++.+.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~g~~~~~  281 (352)
T cd06174         206 LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA----PSLALLLVALLLLGFGLGF  281 (352)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHhc
Confidence            555  57889999999999999999999999999999 8888888877776655442    3367777888999999999


Q ss_pred             hhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHH
Q psy4795         168 WQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA----RMKLYVMGVVLVTGFCG  228 (285)
Q Consensus       168 ~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~----~~~l~il~~~lv~~~v~  228 (285)
                      .++..++.+.+.+|+++ +++++.++..+++|..++..+.+.+..    +.-.++..++.+++.+.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~  347 (352)
T cd06174         282 AFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL  347 (352)
T ss_pred             cchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence            99999999999998655 999999999999999999999888753    22244444444444443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.33  E-value=3.2e-11  Score=118.11  Aligned_cols=155  Identities=16%  Similarity=0.228  Sum_probs=116.9

Q ss_pred             chHHHHhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhccc-CChhHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy4795          74 KIFFTISGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFI-GRSPLMALGFIVHCCLIWILVVWRPHPNN  150 (285)
Q Consensus        74 ~l~~~~~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDri-Grk~~i~~g~~l~~i~~~~l~~~~p~~~~  150 (285)
                      ...|.+..+.|.|+++.+|.  .+.+.++..+.....++++++|+++||+ |||+++.+|.++..++.+.+..  + +++
T Consensus        23 fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~--~-~~~   99 (493)
T PRK15462         23 FSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGA--S-EIH   99 (493)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHH--h-hcc
Confidence            34566677889999998887  4688889999999999999999999999 9999999999988877654432  1 112


Q ss_pred             hHHHHHHHHHHHHhhhhhhcccccceeeecccc---chhHhHHHHHHHHHHHHHHHHHhhhhhHH--HH--HHHHHHHHH
Q psy4795         151 PKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRN---KEAAFSNFRLWESVGFVIAYAYSTHLCAR--MK--LYVMGVVLV  223 (285)
Q Consensus       151 ~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~---~~~afs~~~l~~~lG~~ig~~~s~~l~~~--~~--l~il~~~lv  223 (285)
                      ....++...+.++|.|.+.+..++++++.||++   |..++++++...|+|..+++.+.+.+..+  ++  ..+..+..+
T Consensus       100 ~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~  179 (493)
T PRK15462        100 PSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMI  179 (493)
T ss_pred             hhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHH
Confidence            233444455666888888888899999999864   48899999999999999999999887532  32  333333445


Q ss_pred             HHHHHHHH
Q psy4795         224 TGFCGYVI  231 (285)
Q Consensus       224 ~~~v~~~~  231 (285)
                      ++.+.|..
T Consensus       180 l~li~~~~  187 (493)
T PRK15462        180 AGLVIFLC  187 (493)
T ss_pred             HHHHHHHH
Confidence            55555543

>PRK12382 putative transporter; Provisional

Probab=99.32  E-value=2.5e-10  Score=107.39  Aligned_cols=124  Identities=13%  Similarity=0.221  Sum_probs=99.6

Q ss_pred             hhhhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q psy4795          83 WGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWG  162 (285)
Q Consensus        83 t~~Y~~~~lg~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~G  162 (285)
                      .+.|+++ .|.+..++....++++.++++++.|++.||+|||+.+..+..+..++.+.+.. .   ++.+...+..++.|
T Consensus       239 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~l~g  313 (392)
T PRK12382        239 VSLYFAS-KGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWL-A---PTAWVALAGAALTG  313 (392)
T ss_pred             HHHHHHh-cCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHH-c---ccHHHHHHHHHHHH
Confidence            3556544 45566777788889999999999999999999999999888877776655433 2   24556666778889


Q ss_pred             Hhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         163 VGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       163 ig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      ++.+...+..++.+.+.+|+++ ++++++++...++|.++|..+.+.+..
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~  363 (392)
T PRK12382        314 AGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT  363 (392)
T ss_pred             HHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888888888888887665 999999999999999999999888654

>PRK12382 putative transporter; Provisional

Probab=99.31  E-value=4.1e-11  Score=112.65  Aligned_cols=131  Identities=12%  Similarity=0.021  Sum_probs=104.9

Q ss_pred             hhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHH--HHhCCC--CCChHHH
Q psy4795          81 GLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWIL--VVWRPH--PNNPKIF  154 (285)
Q Consensus        81 ~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l--~~~~p~--~~~~~~~  154 (285)
                      .+.|.|+++.+|.  .++|++...+.++..+++++.|+++||+|||+++..+.+...++.+..  ....+.  .++++.+
T Consensus        36 p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  115 (392)
T PRK12382         36 PVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALL  115 (392)
T ss_pred             hhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHH
Confidence            3456677777787  589999999999999999999999999999999999887665543221  111121  2356777


Q ss_pred             HHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         155 FTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       155 ~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      ++..++.|++.+...+...+.+.+.+|+++ +.+.+.+....+.|..+|..+++.+..
T Consensus       116 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~  173 (392)
T PRK12382        116 VVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHS  173 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            888999999999998888888889987655 999999999999999999999877644

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.30  E-value=3e-10  Score=104.00  Aligned_cols=190  Identities=17%  Similarity=0.194  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHH-HHHHHhcccCC-C---C--------------------c
Q psy4795          19 GYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCL-IWILVVWRPHP-N---N--------------------P   73 (285)
Q Consensus        19 G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~-l~~fl~~e~~~-~---~--------------------p   73 (285)
                      |.......++..++.++.|.+.++.|++..++...+..++. +..+....|++ +   +                    +
T Consensus       131 ~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (365)
T TIGR00900       131 SLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKNP  210 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhHHHHHHhHHHHHHcCc
Confidence            44555666777777888888888999875555444333332 22222221111 0   1                    0


Q ss_pred             chHHH-H------------h-hhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHH
Q psy4795          74 KIFFT-I------------S-GLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCL  137 (285)
Q Consensus        74 ~l~~~-~------------~-~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~  137 (285)
                      ..... .            . .+.|.|.++.+|.  .+.|......+++..+++++.|++.||+||++++..+..+..++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  290 (365)
T TIGR00900       211 LLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLA  290 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence            00000 0            0 2347777776666  57889999999999999999999999999999988876665555


Q ss_pred             HHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         138 IWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       138 ~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      ...+.. .+ + +.+..++..++.|++.+..++..++++.+.+|++. +.+.++++..+++|..++..+++.+..
T Consensus       291 ~~~~~~-~~-~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       291 ILVVGL-TP-P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             HHHHHh-hc-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            544333 22 1 36777778889999999999999999999998765 999999999999999999999887654

>TIGR00898 2A0119 cation transport protein

Probab=99.29  E-value=7.5e-11  Score=114.67  Aligned_cols=113  Identities=19%  Similarity=0.210  Sum_probs=97.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795          94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN  173 (285)
Q Consensus        94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~  173 (285)
                      .+.+++..++.++.++++++.|+++||+|||+++.++.++..++.+...+    .++++.+++..++.|++.+...+...
T Consensus       127 ~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~r~l~G~~~~~~~~~~~  202 (505)
T TIGR00898       127 WKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF----SPNYTVFLVFRLLVGMGIGGIWVQAV  202 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhccchHHHHH
Confidence            35789999999999999999999999999999999998887776655544    34678888889999999999999999


Q ss_pred             cceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         174 GLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       174 ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      +++.|.+|+++ +.+.+++....++|..++..++..+.
T Consensus       203 ~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  240 (505)
T TIGR00898       203 VLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP  240 (505)
T ss_pred             HHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999998765 88888999999999998888775543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.29  E-value=3.1e-11  Score=111.61  Aligned_cols=128  Identities=13%  Similarity=0.166  Sum_probs=103.6

Q ss_pred             hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHH
Q psy4795          80 SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTI  157 (285)
Q Consensus        80 ~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~  157 (285)
                      ..+.|.|+++.+|.  .+.|++...+.++..+++++.|+++||+|||+.+..+.++..++.+.+.+..   ++++.+++.
T Consensus        21 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~   97 (366)
T TIGR00886        21 SPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV---QSYSVLLLL   97 (366)
T ss_pred             HHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHH
Confidence            34455567777887  5788999999999999999999999999999999999988888776654431   166777788


Q ss_pred             HHHHHHhhhhhhcccccceeeecccc-chhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         158 SGLWGVGDAVWQTQVNGLYGTLFRRN-KEAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       158 ~~l~Gig~g~~~~~~~ali~~~fp~~-~~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      .++.|++.+.+ ++.++++.+.+|++ ++.+.+.+..+.++|..++..+++.+..
T Consensus        98 ~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  151 (366)
T TIGR00886        98 RLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG  151 (366)
T ss_pred             HHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            88899987765 55678899999865 4999999999999999999888776543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.29  E-value=1.2e-10  Score=113.75  Aligned_cols=115  Identities=13%  Similarity=0.034  Sum_probs=97.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCC---ChHHHHHHHHHHHHhhhhhhc
Q psy4795          94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPN---NPKIFFTISGLWGVGDAVWQT  170 (285)
Q Consensus        94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~---~~~~~~~~~~l~Gig~g~~~~  170 (285)
                      .+.+++...+.++..+++++.|+++||+|||+++..+.++..++.++.... ++..   +++.+++..++.|++.|...+
T Consensus        56 ~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~r~l~G~~~g~~~~  134 (502)
T TIGR00887        56 SVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLS-PGSSPKSVMATLCFWRFWLGVGIGGDYP  134 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc-cCcccchHHHHHHHHHHHHHHHHhhhhH
Confidence            356788999999999999999999999999999999988888777655442 2211   256778889999999999999


Q ss_pred             ccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         171 QVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       171 ~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                      ..+.++.|.+|++. +.+.+..+...++|..++..++..+
T Consensus       135 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~  174 (502)
T TIGR00887       135 LSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIV  174 (502)
T ss_pred             HHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998766 9999999999999999998887654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK09952 shikimate transporter; Provisional

Probab=99.29  E-value=4.7e-10  Score=107.91  Aligned_cols=150  Identities=11%  Similarity=0.036  Sum_probs=101.1

Q ss_pred             hhhhhhhhccchh--HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q psy4795          82 LWGAYISCALGVS--SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISG  159 (285)
Q Consensus        82 ft~~Y~~~~lg~~--~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~  159 (285)
                      |.|.|.++.+|.+  ....+....++...++.++.|+++||+|||+++..+.++..++..+++......++.+.+....+
T Consensus       272 ~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (438)
T PRK09952        272 FALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIM  351 (438)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            4477777777773  33455667788889999999999999999999888877665544433332222333444455566


Q ss_pred             HHHHhhhhhhcccccceeeeccccc-hhHhHH-HHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHHHHH
Q psy4795         160 LWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSN-FRLWESVGFVIAYAYSTHLCAR------MKLYVMGVVLVTGFCGYVI  231 (285)
Q Consensus       160 l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~-~~l~~~lG~~ig~~~s~~l~~~------~~l~il~~~lv~~~v~~~~  231 (285)
                      +.|++.+...+..++++.|.+|++. +.+.+. +++.+.+|..++..+.+.+...      .-..++.++.+++.+....
T Consensus       352 l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~  431 (438)
T PRK09952        352 LANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL  431 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence            6788888888888999999999866 667664 5666778888888777766331      1233344444555555543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.28  E-value=2.4e-11  Score=111.66  Aligned_cols=119  Identities=15%  Similarity=0.053  Sum_probs=97.3

Q ss_pred             hhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q psy4795          86 YISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGV  163 (285)
Q Consensus        86 Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gi  163 (285)
                      ++++.+|.  .+.|++...+.++..+++++.|+++||+|||+++..+.++..++.+....    .++++.+++..++.|+
T Consensus        28 ~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~  103 (377)
T TIGR00890        28 PLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAI----ADSLAALYLTYGLASA  103 (377)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHhH
Confidence            34455666  57999999999999999999999999999999999998888777755444    2456777788889999


Q ss_pred             hhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795         164 GDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTH  208 (285)
Q Consensus       164 g~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~  208 (285)
                      +.+..++.....+.+.+|++++.+.+.+....++|..++....+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  148 (377)
T TIGR00890       104 GVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITS  148 (377)
T ss_pred             HHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHH
Confidence            999888777778888889888999999999999998765444333

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.28  E-value=8.8e-11  Score=115.25  Aligned_cols=155  Identities=15%  Similarity=0.248  Sum_probs=114.0

Q ss_pred             HHHhhhhhhhhhhccchh--HHHHHHHHHHHHHHHHHhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHHhCCCCCChHH
Q psy4795          77 FTISGLWGAYISCALGVS--SVGYVMICFGVVNAICSLLFGTLMKF-IGRSPLMALGFIVHCCLIWILVVWRPHPNNPKI  153 (285)
Q Consensus        77 ~~~~~ft~~Y~~~~lg~~--~~G~v~~~~gv~~~i~s~l~G~LsDr-iGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~  153 (285)
                      |....+.+.|+++.+|.+  +.+.+...+........+++|+++|| +|||+++..+.++..++...+.+.   +++.+.
T Consensus        38 y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~---~~~~~~  114 (500)
T PRK09584         38 YGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS---GHDAGI  114 (500)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh---cccHHH
Confidence            445567788999999984  45566666666666667789999999 599999999998888776554432   223445


Q ss_pred             HHHHHHHHHHhhhhhhcccccceeeeccccc---hhHhHHHHHHHHHHHHHHHHHhhhhhHH--HH--HHHHHHHHHHHH
Q psy4795         154 FFTISGLWGVGDAVWQTQVNGLYGTLFRRNK---EAAFSNFRLWESVGFVIAYAYSTHLCAR--MK--LYVMGVVLVTGF  226 (285)
Q Consensus       154 ~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~---~~afs~~~l~~~lG~~ig~~~s~~l~~~--~~--l~il~~~lv~~~  226 (285)
                      +++...+.|+|.|...+..++++++.||+++   ..+++.+++..|+|..+|..+++.+..+  |+  .++..+..+++.
T Consensus       115 l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~  194 (500)
T PRK09584        115 VYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITV  194 (500)
T ss_pred             HHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            5566778899999999988999999998643   4588999999999999999999887542  33  444444445666


Q ss_pred             HHHHHHHH
Q psy4795         227 CGYVIVEV  234 (285)
Q Consensus       227 v~~~~~e~  234 (285)
                      +.+....+
T Consensus       195 i~~~~~~~  202 (500)
T PRK09584        195 VNFAFCQR  202 (500)
T ss_pred             HHHHHhHH
Confidence            56655543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.28  E-value=3.5e-10  Score=107.27  Aligned_cols=128  Identities=13%  Similarity=0.080  Sum_probs=89.8

Q ss_pred             hhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q psy4795          83 WGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGL  160 (285)
Q Consensus        83 t~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l  160 (285)
                      .|.|+++ .|.  ...+..+...++++.+++++.|+++||+|||+++..+.++..+...++.. .+ .++........+.
T Consensus       254 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~  330 (426)
T PRK12307        254 LPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFR-IP-QDNYLLLGACLFG  330 (426)
T ss_pred             HHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-Hc-cccHHHHHHHHHH
Confidence            3666655 355  46778888999999999999999999999999998888776655444332 22 2222222222223


Q ss_pred             HHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy4795         161 WGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARM  213 (285)
Q Consensus       161 ~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~  213 (285)
                      .+.+.....+..+..+.+.+|++. +.+.++.+...++|..++..+.+.+..+.
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~  384 (426)
T PRK12307        331 LMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITM  384 (426)
T ss_pred             HHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcc
Confidence            333333334455677889999876 99999988888999999999988876544

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.27  E-value=1.3e-10  Score=108.15  Aligned_cols=124  Identities=19%  Similarity=0.242  Sum_probs=104.7

Q ss_pred             hhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q psy4795          83 WGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGL  160 (285)
Q Consensus        83 t~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l  160 (285)
                      .|.+.+ .+|.  .+++++...+.++..+++++.|+++||+|||+++..+.++..++......    .++.+.+++..++
T Consensus        14 ~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~l   88 (377)
T PRK11102         14 LPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACAL----AQTIDQLIYMRFL   88 (377)
T ss_pred             HHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHH----HccHHHHHHHHHH
Confidence            344444 3566  57899999999999999999999999999999999999888777666544    2456777888899


Q ss_pred             HHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         161 WGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       161 ~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      .|++.+...+..++++.+.+|+++ +.+.+..+...++|..++..+++.+..
T Consensus        89 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~  140 (377)
T PRK11102         89 HGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV  140 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998765 999999999999999999998877654

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.27  E-value=3.5e-11  Score=113.28  Aligned_cols=130  Identities=12%  Similarity=0.009  Sum_probs=103.9

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHh--CCC--CCChHHHH
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW--RPH--PNNPKIFF  155 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~--~p~--~~~~~~~~  155 (285)
                      +.|.|+++.+|.  .++|+++.++.++..+++++.|+++||+|||+++..+.++..++...+...  ..+  ..+.+.++
T Consensus        37 ~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  116 (399)
T PRK05122         37 VLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLL  116 (399)
T ss_pred             HHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHH
Confidence            456667777776  578999999999999999999999999999999999988766654332221  111  12345677


Q ss_pred             HHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         156 TISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       156 ~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      +..++.|++.+...+..++.+.+.+|+++ +.+.+.+....++|..+|..+++.+..
T Consensus       117 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  173 (399)
T PRK05122        117 LGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH  173 (399)
T ss_pred             HHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence            78899999999999988888888887655 999999999999999999999887654

>TIGR00889 2A0110 nucleoside transporter

Probab=99.27  E-value=5.6e-10  Score=106.92  Aligned_cols=119  Identities=12%  Similarity=0.109  Sum_probs=96.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795          94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN  173 (285)
Q Consensus        94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~  173 (285)
                      +..|..+.+..+.++++.++.|+++||+|||+++..+.++..+....+....++..+.+..++..++.|++.+..++...
T Consensus       251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~  330 (418)
T TIGR00889       251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGS  330 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999887776544443222112345566678889999999888888


Q ss_pred             cceeeeccccc-hhHhHHHH-HHHHHHHHHHHHHhhhhhHH
Q psy4795         174 GLYGTLFRRNK-EAAFSNFR-LWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       174 ali~~~fp~~~-~~afs~~~-l~~~lG~~ig~~~s~~l~~~  212 (285)
                      .++.+.+|++. +++++..+ ..+++|..+|..+++.+..+
T Consensus       331 ~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~  371 (418)
T TIGR00889       331 VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEK  371 (418)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            99999999765 99999997 67899999999999987655

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.26  E-value=1.2e-09  Score=102.82  Aligned_cols=205  Identities=14%  Similarity=0.081  Sum_probs=142.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHHHHHhccc-CCCC--------c---ch---------H
Q psy4795          18 VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRP-HPNN--------P---KI---------F   76 (285)
Q Consensus        18 ~G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~~fl~~e~-~~~~--------p---~l---------~   76 (285)
                      .|.+...-+++..++.+..|.+.+++|++..+........+.+..++..++ ++++        .   ..         .
T Consensus       130 ~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  209 (382)
T TIGR00902       130 YGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLIGFLIKPTIPPKDAIPEDESQGDSAFIALLKNPMNLR  209 (382)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHcCCCCCCCccccccccccchhHHHHHcChHHHH
Confidence            355666667778888888899999999975554433332222333333331 1110        0   00         0


Q ss_pred             HHH------------hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHH
Q psy4795          77 FTI------------SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILV  142 (285)
Q Consensus        77 ~~~------------~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~  142 (285)
                      +..            ..|.|.|+++ .|.  .++|+......+++++..++.|++.||+|+|+++.++.+...+.+....
T Consensus       210 ~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~  288 (382)
T TIGR00902       210 FLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIG  288 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence            000            1234677765 677  4789888899999999999999999999999999999998888776554


Q ss_pred             HhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy4795         143 VWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFR-LWESVGFVIAYAYSTHLCARMKLYVMGV  220 (285)
Q Consensus       143 ~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~-l~~~lG~~ig~~~s~~l~~~~~l~il~~  220 (285)
                      .    .++.+.++....+.|++.+...+....++.+. |+++ +.+.++++ ....+|+++|..+++.+..+........
T Consensus       289 ~----~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~  363 (382)
T TIGR00902       289 A----IEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVF  363 (382)
T ss_pred             h----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            3    35667788889999999999999998888887 7655 77788876 5678999999999999877644333333


Q ss_pred             HHHHHHHH
Q psy4795         221 VLVTGFCG  228 (285)
Q Consensus       221 ~lv~~~v~  228 (285)
                      ..+++.+.
T Consensus       364 ~~~~~~~~  371 (382)
T TIGR00902       364 MAIIAAAA  371 (382)
T ss_pred             HHHHHHHH
Confidence            33333333

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.24  E-value=7.5e-11  Score=111.52  Aligned_cols=113  Identities=19%  Similarity=0.183  Sum_probs=98.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhccc
Q psy4795          93 VSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQV  172 (285)
Q Consensus        93 ~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~  172 (285)
                      ..+.|++...+.++..+++++.|+++||+|||+++..+.++..++..+..... +..+.+.+++..++.|++.+...+..
T Consensus        70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~~~~~~~~~~  148 (481)
T TIGR00879        70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA-FALSVEMLIVGRVLLGIGVGIASALV  148 (481)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHhhhhHHHhHH
Confidence            46789999999999999999999999999999999999888777766654432 23455677888999999999999999


Q ss_pred             ccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHh
Q psy4795         173 NGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYS  206 (285)
Q Consensus       173 ~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s  206 (285)
                      ++++.+.+|+++ +.+.++++...++|..++..++
T Consensus       149 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       149 PMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             HHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            999999998655 9999999999999999999998

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.24  E-value=1.4e-10  Score=109.95  Aligned_cols=119  Identities=16%  Similarity=0.119  Sum_probs=103.7

Q ss_pred             hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhh
Q psy4795          89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDA  166 (285)
Q Consensus        89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g  166 (285)
                      +.+|.  ++.|+.+..+.++..+++++.|+++||+|||+++..+.++..++.+....    .++++.+++..++.|++.+
T Consensus        48 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g  123 (394)
T PRK10213         48 QDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSF----ANSFSLLLIGRACLGLALG  123 (394)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHH----HChHHHHHHHHHHHHHhhH
Confidence            34565  57899999999999999999999999999999999999988877655444    3567888888999999999


Q ss_pred             hhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         167 VWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       167 ~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      ...+...+++.+.+|+++ +.+.+......++|..+|..+++.+..
T Consensus       124 ~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~  169 (394)
T PRK10213        124 GFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE  169 (394)
T ss_pred             HHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999998766 999999999999999999999988754

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.24  E-value=1.4e-09  Score=103.09  Aligned_cols=121  Identities=12%  Similarity=0.137  Sum_probs=95.4

Q ss_pred             hhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q psy4795          84 GAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLW  161 (285)
Q Consensus        84 ~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~  161 (285)
                      |.|+++.+|.  .+.|+.+...+++..+++++.|++.||.++++++..+... .+....+..    .++++...+..+++
T Consensus       229 ~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~----~~~~~~~~~~~~~~  303 (393)
T PRK11195        229 LAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLVVLLMAL----QHSLLPAYPLLILI  303 (393)
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHHHHH----HhHHHHHHHHHHHH
Confidence            4567777777  5789999999999999999999999999999888877543 222222211    23456566677789


Q ss_pred             HHhhhhhhcccccceeeeccccc--hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         162 GVGDAVWQTQVNGLYGTLFRRNK--EAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       162 Gig~g~~~~~~~ali~~~fp~~~--~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                      |++.+..+++.++.+.+..|++.  +.++++.++.+++|..++.++.+.+
T Consensus       304 G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~  353 (393)
T PRK11195        304 GALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL  353 (393)
T ss_pred             HHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence            99999999999999887766643  8899999999999999999988765

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.24  E-value=1.4e-09  Score=102.21  Aligned_cols=124  Identities=14%  Similarity=0.136  Sum_probs=95.2

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISG  159 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~  159 (285)
                      |.|.|.++ .|.  ..+|+......++..+++++.|+++||+|||+++..+..+..++.....   + .   ........
T Consensus       222 ~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~---~-~---~~~~~~~~  293 (381)
T PRK03633        222 LMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML---S-Q---AAMAPALF  293 (381)
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh---h-h---HHHHHHHH
Confidence            34777765 465  4688888899999999999999999999999998888777666554332   1 1   22234456


Q ss_pred             HHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy4795         160 LWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARM  213 (285)
Q Consensus       160 l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~  213 (285)
                      ++|++.+...+..++...+..|+++ +.+.+.+++..++|..+|..+++.+-.+.
T Consensus       294 l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~  348 (381)
T PRK03633        294 ILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY  348 (381)
T ss_pred             HHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7787777778888888889888766 77778888999999999999999875543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.24  E-value=1.1e-10  Score=108.40  Aligned_cols=119  Identities=17%  Similarity=0.198  Sum_probs=102.6

Q ss_pred             hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhh
Q psy4795          89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDA  166 (285)
Q Consensus        89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g  166 (285)
                      +.+|.  .++|++...+.++..+++++.|+++||+|||+.+..+.++..++.+....    .++++.+++..++.|++.+
T Consensus        33 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~g~~~~  108 (385)
T TIGR00710        33 ADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLAL----SNNIETLLVLRFVQAFGAS  108 (385)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHcchh
Confidence            44565  57899999999999999999999999999999999998887777665544    2456778888899999999


Q ss_pred             hhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         167 VWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       167 ~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      ...+..++++.+.+|+++ +.+++..+...++|..+|..+++.+..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~  154 (385)
T TIGR00710       109 AGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV  154 (385)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998765 999999999999999999999887654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.23  E-value=2.3e-09  Score=100.81  Aligned_cols=188  Identities=13%  Similarity=0.101  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHHHHHhcccC--CC--C-----------c--chHHHH-----
Q psy4795          22 MICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPH--PN--N-----------P--KIFFTI-----   79 (285)
Q Consensus        22 l~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~~fl~~e~~--~~--~-----------p--~l~~~~-----   79 (285)
                      .....++..++.++.+.+.+..|+|..+....++.++..+....+.|+  ++  .           +  ...+..     
T Consensus       133 ~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (382)
T PRK10091        133 VSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEAKGGLREQFHFLRSPAPWLIFAATMFGN  212 (382)
T ss_pred             HHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccCHHHHHHHhcChHHHHHHHHHHHHH
Confidence            344455566666777777788898755554444444432222222221  11  0           0  111110     


Q ss_pred             ------hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCCh
Q psy4795          80 ------SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNP  151 (285)
Q Consensus        80 ------~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~  151 (285)
                            ..|.+.|+.+..|.  .+.++.....+++..++.++.|+++||+|+++++..+..+..++.+.+....   ++.
T Consensus       213 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~---~~~  289 (382)
T PRK10091        213 AGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG---GMK  289 (382)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH---hhH
Confidence                  11234566665665  5788999999999999999999999999999999888777666654433322   223


Q ss_pred             HHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795         152 KIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       152 ~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~  212 (285)
                      +...+..++.+++.....++......+..++++..+.+..+...++|.++|..+++.+...
T Consensus       290 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Gp~~~G~l~~~  350 (382)
T PRK10091        290 TASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAIGAYCGGMMLTL  350 (382)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHhHHHHHc
Confidence            4445555566666555555444444443333333333345677899999999999887654

>KOG1330|consensus

Probab=99.23  E-value=6e-13  Score=126.83  Aligned_cols=131  Identities=21%  Similarity=0.286  Sum_probs=112.4

Q ss_pred             CCCcchHHHHhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCC
Q psy4795          70 PNNPKIFFTISGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPH  147 (285)
Q Consensus        70 ~~~p~l~~~~~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~  147 (285)
                      .+...++.....     ++..+++  +..|++...+.++.++++|+.|+|+||++||.++.+|..+..++.+..-+.   
T Consensus        47 ~Dr~~iagv~~~-----v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs---  118 (493)
T KOG1330|consen   47 ADRYTIAGVLKE-----VQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS---  118 (493)
T ss_pred             hhhhhhhhhhHH-----HHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH---
Confidence            345555554432     2344555  678899999999999999999999999999999999999999888775552   


Q ss_pred             CCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         148 PNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       148 ~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                       ..+|.+.++..+.|+|.+.+.+..+++++|+||+++ +.+++++++..+.|+.+|+.+++..
T Consensus       119 -~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~v  180 (493)
T KOG1330|consen  119 -NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVV  180 (493)
T ss_pred             -HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeee
Confidence             568999999999999999999999999999999876 9999999999999999999998774

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.23  E-value=6.5e-11  Score=113.88  Aligned_cols=120  Identities=18%  Similarity=0.171  Sum_probs=103.1

Q ss_pred             hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhh
Q psy4795          88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGD  165 (285)
Q Consensus        88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~  165 (285)
                      .+.+|.  .+.++++..+.++..++.++.|+++||+|||+++..+.++..++.+....    .++++.+++..++.|++.
T Consensus        29 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~G~~~  104 (485)
T TIGR00711        29 AGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGV----APNLELMIIFRVIQGFGG  104 (485)
T ss_pred             HHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHhhh
Confidence            344665  57889999999999999999999999999999999998887777655443    356778888899999999


Q ss_pred             hhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         166 AVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       166 g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      +...+..++++.+.+|+++ +.+.+.+....++|..+|..+++.+..
T Consensus       105 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  151 (485)
T TIGR00711       105 GPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE  151 (485)
T ss_pred             hhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc
Confidence            9999999999999998655 999999999999999999998887643

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.22  E-value=1.4e-10  Score=111.17  Aligned_cols=123  Identities=12%  Similarity=0.130  Sum_probs=101.6

Q ss_pred             hhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q psy4795          83 WGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGL  160 (285)
Q Consensus        83 t~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l  160 (285)
                      .|.+.+ .+|.  .+.|++...+.++..+++++.|+++||+|||+++.++.++..++.+....    .++++.+++..++
T Consensus        46 ~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~l  120 (434)
T PRK11663         46 MPEMLA-DLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGF----SSSLWAFALLWVL  120 (434)
T ss_pred             hHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHH
Confidence            344443 3666  57899999999999999999999999999999999998887777655443    3456777777788


Q ss_pred             HHHhhhhhhcccccceeeecccc-chhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         161 WGVGDAVWQTQVNGLYGTLFRRN-KEAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       161 ~Gig~g~~~~~~~ali~~~fp~~-~~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      .|++.|...+...+++.+.+|++ ++.+.++++..+++|.+++..+.+.+.
T Consensus       121 ~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~  171 (434)
T PRK11663        121 NAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIA  171 (434)
T ss_pred             HHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999988888899999999876 499999999999999999988877654

>PRK03545 putative arabinose transporter; Provisional

Probab=99.22  E-value=1.4e-10  Score=109.14  Aligned_cols=119  Identities=14%  Similarity=0.124  Sum_probs=102.1

Q ss_pred             hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhh
Q psy4795          88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGD  165 (285)
Q Consensus        88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~  165 (285)
                      .+.+|.  .++|+....+.++..++++..|+++||+|||+++..+.++..++.+...+    .++++.+++..++.|++.
T Consensus        36 ~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~r~~~G~~~  111 (390)
T PRK03545         36 AQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSAL----AWNFTVLLISRIGIAFAH  111 (390)
T ss_pred             HhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHH
Confidence            445665  68899999999999999999999999999999999998887777655544    346788888889999999


Q ss_pred             hhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         166 AVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       166 g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      +...+..++++.+.+|+++ +.+.++++...++|.++|..+++.+.
T Consensus       112 ~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~  157 (390)
T PRK03545        112 AIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIG  157 (390)
T ss_pred             HHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            9999999999999998655 99999999999999999999887754

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.22  E-value=1.7e-09  Score=102.96  Aligned_cols=115  Identities=13%  Similarity=0.075  Sum_probs=92.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795          94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN  173 (285)
Q Consensus        94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~  173 (285)
                      .+.|++..+..+++.++.+++|+++||+|||+.+..+.++..+......+    .++++.+.....+.|++.+...+...
T Consensus       262 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~----~~~~~~~~~~~~l~g~~~~~~~~~~~  337 (420)
T PRK09528        262 RVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGF----ATGPLEVSILKLLHAFEVPFLLVGVF  337 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999988888777666554433    23456667778888888888888778


Q ss_pred             cceeeeccccc-hhHhHH-HHHHHHHHHHHHHHHhhhhhHH
Q psy4795         174 GLYGTLFRRNK-EAAFSN-FRLWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       174 ali~~~fp~~~-~~afs~-~~l~~~lG~~ig~~~s~~l~~~  212 (285)
                      .++.+.+|++. +.+++. +++..++|..++..+.+.+...
T Consensus       338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~  378 (420)
T PRK09528        338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS  378 (420)
T ss_pred             HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence            88888888776 666654 7888999999999998887653

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.22  E-value=2.3e-09  Score=103.38  Aligned_cols=160  Identities=11%  Similarity=-0.010  Sum_probs=96.1

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhccc--CChhHHH-HHHHHHHHHHHHHHHhCCCCCChHHHHH
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFI--GRSPLMA-LGFIVHCCLIWILVVWRPHPNNPKIFFT  156 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDri--Grk~~i~-~g~~l~~i~~~~l~~~~p~~~~~~~~~~  156 (285)
                      |.|.|+++..|.  ..++.....+++++.++.+++|+++||+  |||+... ....+..++... +...+ .++.+...+
T Consensus       275 ~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~-~~~~~-~~~~~~~~~  352 (452)
T PRK11273        275 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV-YWLNP-AGNPTVDMA  352 (452)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHH-HHHhc-ccChHHHHH
Confidence            448888877665  5788888899999999999999999999  5554322 222222222222 22222 233333333


Q ss_pred             HHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHH-HHHHhhhhhHH----HHHHHHHHHHHHHHHHHH
Q psy4795         157 ISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVI-AYAYSTHLCAR----MKLYVMGVVLVTGFCGYV  230 (285)
Q Consensus       157 ~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~i-g~~~s~~l~~~----~~l~il~~~lv~~~v~~~  230 (285)
                      ...+.|.+........++...+.+|++. +.+.+.++...++|..+ |..+.+.+..+    .-++++.+..+++.+...
T Consensus       353 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        353 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            3444444322222223445668888765 99999999999998655 67777776543    334455555666655555


Q ss_pred             HHHHHHHHhHHhh
Q psy4795         231 IVEVRHMMKARRQ  243 (285)
Q Consensus       231 ~~e~~~~~~~~~~  243 (285)
                      ++.+-++||++|.
T Consensus       433 ~~~~~~~~~~~~~  445 (452)
T PRK11273        433 VVMIGEKRHHEEL  445 (452)
T ss_pred             HHhccccchHHHH
Confidence            5554444444333

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.22  E-value=2.3e-10  Score=108.39  Aligned_cols=119  Identities=13%  Similarity=0.063  Sum_probs=104.0

Q ss_pred             hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhh
Q psy4795          89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDA  166 (285)
Q Consensus        89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g  166 (285)
                      +.+|.  .+.|++...+.++..+++++.|+++||+|||+++..+..+..++.+...+    .++++.+++..++.|++.+
T Consensus        37 ~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~----a~~~~~ll~~r~l~Gig~~  112 (393)
T PRK09705         37 QASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMREL----YPQSALLLSSALLGGVGIG  112 (393)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHH----CcchHHHHHHHHHHHhHHH
Confidence            34555  67899999999999999999999999999999999999999888877655    3456777888999999999


Q ss_pred             hhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         167 VWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       167 ~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      ..++..++++.+.+|++++.+.+.+....++|..+|..+++.+..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~  157 (393)
T PRK09705        113 IIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQ  157 (393)
T ss_pred             HHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998777999999999999999999998887643

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.22  E-value=3.3e-09  Score=100.81  Aligned_cols=190  Identities=13%  Similarity=0.082  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHH-HHHHHhc-ccCCC---------------Cc-chHHHH-
Q psy4795          19 GYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCL-IWILVVW-RPHPN---------------NP-KIFFTI-   79 (285)
Q Consensus        19 G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~-l~~fl~~-e~~~~---------------~p-~l~~~~-   79 (285)
                      |.......++..++.++.|.+. .+|++..++...++.++. +...... |++++               ++ ...+.. 
T Consensus       138 ~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (400)
T PRK11646        138 SLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKLSTVRTPVREGMTRVLRDKRFVTYVLT  216 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccccccchhhHHHHHHHHcCchHHHHHHH
Confidence            3444556677777888888887 778876555544443332 2222222 21111               01 111100 


Q ss_pred             -----------hhhhhhhhhhccch-hHHHHHHHHHHHHHHHHHhhhhhhhc-ccCChhHHHHHHHHHHHHHHHHHHhCC
Q psy4795          80 -----------SGLWGAYISCALGV-SSVGYVMICFGVVNAICSLLFGTLMK-FIGRSPLMALGFIVHCCLIWILVVWRP  146 (285)
Q Consensus        80 -----------~~ft~~Y~~~~lg~-~~~G~v~~~~gv~~~i~s~l~G~LsD-riGrk~~i~~g~~l~~i~~~~l~~~~p  146 (285)
                                 ..+.|.|.++..+. ..+|+.....+++...+....+++.| |++.++.+..+.++..++..++..   
T Consensus       217 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~---  293 (400)
T PRK11646        217 LTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGM---  293 (400)
T ss_pred             HHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH---
Confidence                       11347777765554 56777777777766655555566655 577677677777666665544332   


Q ss_pred             CCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy4795         147 HPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARM  213 (285)
Q Consensus       147 ~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~  213 (285)
                       .++.+...+...++|++.+...++.++++.+..|+++ +++++.+++.+++|..+|..+++.+..+.
T Consensus       294 -~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~  360 (400)
T PRK11646        294 -VSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG  360 (400)
T ss_pred             -hhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence             2334555566678889999999999999999998765 99999999999999999999999886553

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.22  E-value=1.7e-09  Score=106.83  Aligned_cols=126  Identities=17%  Similarity=0.163  Sum_probs=107.9

Q ss_pred             hhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q psy4795          84 GAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLW  161 (285)
Q Consensus        84 ~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~  161 (285)
                      |.+..+.+|.  ...|+++.++++|.++++.+.+++.+|+++++++..+.+..+++.+.+.+    .++.+...+..++.
T Consensus       242 Pl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal----~~~~~~~~~~l~l~  317 (524)
T PF05977_consen  242 PLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLAL----SPSFWLALIALFLA  317 (524)
T ss_pred             hHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhc----chHHHHHHHHHHHH
Confidence            7777777776  56889999999999999999999999999999988888777766554433    34667888888999


Q ss_pred             HHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy4795         162 GVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARM  213 (285)
Q Consensus       162 Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~  213 (285)
                      |++....++..++.+-...|++. ++++|++++..+.++.+|.++.+.+....
T Consensus       318 G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~  370 (524)
T PF05977_consen  318 GAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF  370 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999987 99999999999999999999988875543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.22  E-value=1.3e-10  Score=110.12  Aligned_cols=120  Identities=16%  Similarity=0.121  Sum_probs=101.7

Q ss_pred             hhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q psy4795          86 YISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGV  163 (285)
Q Consensus        86 Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gi  163 (285)
                      +.++.+|.  .+.++....+.++..+++++.|+++||+|||+++..+.++..++.....+    .++.+.+++..++.|+
T Consensus        43 ~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~  118 (426)
T PRK12307         43 LIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGL----ASGVIMLTLSRFIVGM  118 (426)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHH
Confidence            44566676  46889999999999999999999999999999999999888877665444    2457788888999999


Q ss_pred             hhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         164 GDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       164 g~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                      +.|...+...+++.+.+|+++ +.+.+.+....++|..++..+.+.+
T Consensus       119 g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l  165 (426)
T PRK12307        119 GMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSF  165 (426)
T ss_pred             HHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHH
Confidence            999999999999999998765 8999999999999999888776654

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.21  E-value=1.1e-09  Score=102.16  Aligned_cols=129  Identities=15%  Similarity=0.142  Sum_probs=99.3

Q ss_pred             hhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q psy4795          83 WGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGL  160 (285)
Q Consensus        83 t~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l  160 (285)
                      .|.|+.+.+|.  .+.+.+....+++..+++++.|+++||+|||+.+..+.++..+.....+..   .++.+...+..++
T Consensus       261 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  337 (405)
T TIGR00891       261 LPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI---GANVAVLGLGLFF  337 (405)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh---CCchHHHHHHHHH
Confidence            36677766676  578888999999999999999999999999999888876654333332222   2344555555566


Q ss_pred             HHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy4795         161 WGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARMK  214 (285)
Q Consensus       161 ~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~~  214 (285)
                      .|++.+...+..++.+.+.+|++. +++.++.+...++|..++..+.+.+..+..
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g  392 (405)
T TIGR00891       338 QQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD  392 (405)
T ss_pred             HHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            676666666778889999998766 999999999999999999999988877544

>PRK10133 L-fucose transporter; Provisional

Probab=99.21  E-value=4.8e-10  Score=108.13  Aligned_cols=125  Identities=16%  Similarity=0.121  Sum_probs=103.6

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISG  159 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~  159 (285)
                      +.|.+ ++.+|.  .+.|+.+..+.++..+++++.|+++||+|||+++..+.++..++.+....... .++++.+++..+
T Consensus        48 ~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~-a~~~~~ll~~r~  125 (438)
T PRK10133         48 LLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-IMNYTLFLVGLF  125 (438)
T ss_pred             HHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHH
Confidence            44544 667777  57999999999999999999999999999999999999988887765422111 456788888899


Q ss_pred             HHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795         160 LWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTH  208 (285)
Q Consensus       160 l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~  208 (285)
                      +.|+|.|..++..|+++.+..|+++ +...+.++...++|..+|..+++.
T Consensus       126 l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~  175 (438)
T PRK10133        126 IIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS  175 (438)
T ss_pred             HHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998766665 446889999999999999988764

>PRK11043 putative transporter; Provisional

Probab=99.21  E-value=3.5e-09  Score=99.84  Aligned_cols=191  Identities=10%  Similarity=0.020  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHH-HHHHHhcccCCCCc---c-hH----------------H-
Q psy4795          20 YVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCL-IWILVVWRPHPNNP---K-IF----------------F-   77 (285)
Q Consensus        20 ~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~-l~~fl~~e~~~~~p---~-l~----------------~-   77 (285)
                      ......+++..+..+..|.+.+++|++..++...++.++. +..+...|+++++.   . ..                + 
T Consensus       134 ~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (401)
T PRK11043        134 TIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSKKARKQSQDALTFKQLLKSKTYLGNVLIFA  213 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHcChhHHHHHHHHH
Confidence            3334455666677778888888899975554434444333 22232333221110   0 00                0 


Q ss_pred             -------HHhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHH-HhCCC
Q psy4795          78 -------TISGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILV-VWRPH  147 (285)
Q Consensus        78 -------~~~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~-~~~p~  147 (285)
                             ....+.|.|.++ .|.  .+.|+.+....++..+++.+.+++.||+|+|+....+.+...++...+. .....
T Consensus       214 ~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (401)
T PRK11043        214 ACSAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLS  292 (401)
T ss_pred             HHHHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                   001233566654 566  4678888888999999999999999999999877666555444433221 11111


Q ss_pred             CCChHHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         148 PNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       148 ~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      .++.+...+...++|++.+..++..++...+..|++++++.++++..+..+...+..+.+.+..
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~  356 (401)
T PRK11043        293 HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSALIS  356 (401)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            2344555555677888988888888888778888888999999999988887777777666543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.20  E-value=1.2e-09  Score=100.93  Aligned_cols=130  Identities=18%  Similarity=0.183  Sum_probs=98.0

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHH-HHHHhCCCCCChHHHHHHH
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIW-ILVVWRPHPNNPKIFFTIS  158 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~-~l~~~~p~~~~~~~~~~~~  158 (285)
                      +.|.|.++.+|.  .+.+..+....+++.++.++.|+++||+|||+.+..+..+..+... ....... +++.+..+...
T Consensus       241 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  319 (394)
T TIGR00883       241 YLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLD-SGSFTLFFFLV  319 (394)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHH
Confidence            457788777776  4688889999999999999999999999999987755544433322 2222222 34556666667


Q ss_pred             HHHHHhhhhhhcccccceeeeccccc-hhHhHH-HHHHHHHHHHHHHHHhhhhhHH
Q psy4795         159 GLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSN-FRLWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       159 ~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~-~~l~~~lG~~ig~~~s~~l~~~  212 (285)
                      .+.|++.+..++..++.+.+.+|++. +.+.+. +++...+|..++..+++.+..+
T Consensus       320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~  375 (394)
T TIGR00883       320 LGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM  375 (394)
T ss_pred             HHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHH
Confidence            78888888899999999999999765 888885 6677788888998888877554

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.20  E-value=2.7e-09  Score=98.11  Aligned_cols=147  Identities=16%  Similarity=0.109  Sum_probs=95.4

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChh--HHHHHHHHHHH--HHHHHHHhCCCCCChHHHH
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSP--LMALGFIVHCC--LIWILVVWRPHPNNPKIFF  155 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~--~i~~g~~l~~i--~~~~l~~~~p~~~~~~~~~  155 (285)
                      +.|.|+++.+|.  .+.++.....+++..+++++.|+++||+|||+  ...........  ............++.+...
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (399)
T TIGR00893       237 WFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAAL  316 (399)
T ss_pred             HHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence            347788777776  46788999999999999999999999999996  22111111111  1111111121122333333


Q ss_pred             HHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHHHHHHHH
Q psy4795         156 TISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA-----RMKLYVMGVVLVTGFCGY  229 (285)
Q Consensus       156 ~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~-----~~~l~il~~~lv~~~v~~  229 (285)
                      ....+.+.+.+ .++...++..+.+|++. +.+.++++..+++|..++..+.+.+..     ....++..++.+++.+.+
T Consensus       317 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       317 ALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             HHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            33334444444 78888999999998765 999999999999999999998887643     223334444444444444

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.20  E-value=1.5e-09  Score=108.06  Aligned_cols=193  Identities=16%  Similarity=0.229  Sum_probs=141.6

Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHhhhHhhhCc-hHHHHHHHHHHHHHHHHHHhccc--CCCCcchHHHH----hhhh--
Q psy4795          13 LGVSSVGYVMICFGVVNAICSLLFGTLMKFIGR-SPLMALGFIVHCCLIWILVVWRP--HPNNPKIFFTI----SGLW--   83 (285)
Q Consensus        13 ~g~d~~G~il~~~gi~~~~~a~~~G~l~~~~G~-~~~~~~g~~~~~~~l~~fl~~e~--~~~~p~l~~~~----~~ft--   83 (285)
                      .-+||+|..++..|++.++.++..|. -..++| ++-++.-+++.++++++|.+||.  ++++|++++.+    +.|.  
T Consensus       237 ~~lD~IG~~L~~~Gl~LfLlgl~wgG-~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~  315 (599)
T PF06609_consen  237 KELDWIGIFLFIAGLALFLLGLSWGG-YPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAAL  315 (599)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHhccC-CCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHH
Confidence            46999999999999999999999876 012578 58888888888888999999995  34577666544    1111  


Q ss_pred             ------------------hhhhhhccc-----hhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHH-HHHHHHHHHHHH
Q psy4795          84 ------------------GAYISCALG-----VSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLM-ALGFIVHCCLIW  139 (285)
Q Consensus        84 ------------------~~Y~~~~lg-----~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i-~~g~~l~~i~~~  139 (285)
                                        |.......+     ...+++.....+.+..+++.+.|.+..+++|-|.. +++.+++.+..-
T Consensus       316 lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~G  395 (599)
T PF06609_consen  316 LVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCG  395 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHH
Confidence                              222222222     22467888889999999999999999988886554 567666665555


Q ss_pred             HHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795         140 ILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTH  208 (285)
Q Consensus       140 ~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~  208 (285)
                      .+....|++.+.+  +...++.|++.|....+......-..|++. +.+.++.-..|.+|.++|.++...
T Consensus       396 ama~~~~~n~~~~--i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~  463 (599)
T PF06609_consen  396 AMAAVRPDNKNAA--IAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNA  463 (599)
T ss_pred             HHHHccCCCcchH--HHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            5666666555433  455667778888777777777766778877 999999999999999999887644

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK15075 citrate-proton symporter; Provisional

Probab=99.20  E-value=2.2e-09  Score=102.84  Aligned_cols=130  Identities=17%  Similarity=0.137  Sum_probs=87.4

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISG  159 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~  159 (285)
                      |.|.|+++.+|.  .+.++..++.++++.++++++|+++||+|||++...+..+..+...+...+.+..++.........
T Consensus       260 ~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (434)
T PRK15075        260 YTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVEL  339 (434)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence            357888877777  457788889999999999999999999999999887655443322222212111233333333345


Q ss_pred             HHHHhhhhhhcccccceeeeccccc-hhHhHH-HHHHHHHHHHHHHHHhhhhhH
Q psy4795         160 LWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSN-FRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       160 l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~-~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      +.|++.+.+++..+.+..|.+|++. +.+.++ +++.+.++..++..+.+.+..
T Consensus       340 ~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~  393 (434)
T PRK15075        340 WLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIH  393 (434)
T ss_pred             HHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence            5567777777777788899998876 888886 444554545566666655544

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.20  E-value=3.2e-09  Score=100.89  Aligned_cols=124  Identities=21%  Similarity=0.178  Sum_probs=96.3

Q ss_pred             hhhhhhccch-hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q psy4795          84 GAYISCALGV-SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWG  162 (285)
Q Consensus        84 ~~Y~~~~lg~-~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~G  162 (285)
                      +.|.+..+|. ...+.......++.++++++.|+++||+|||+++..+.++..++...+.+ .+  ++.+..++..++.|
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~g  322 (437)
T TIGR00792       246 VYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFF-AG--SNLPLILVLIILAG  322 (437)
T ss_pred             heeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-cc--hhHHHHHHHHHHHH
Confidence            3444445553 45667777789999999999999999999999999998877776655443 22  34556666677889


Q ss_pred             Hhhhhhhcccccceeeecc-------ccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         163 VGDAVWQTQVNGLYGTLFR-------RNK-EAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       163 ig~g~~~~~~~ali~~~fp-------~~~-~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      ++.+..++..++++++..|       +++ +.+++++++.+++|.++|..+.+.+.
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll  378 (437)
T TIGR00792       323 FGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLIL  378 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988764       333 88899999999999999998877753

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.19  E-value=4.8e-09  Score=97.35  Aligned_cols=188  Identities=16%  Similarity=0.165  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHH-HHHHHh-cccCCCCc-------------------chHH
Q psy4795          19 GYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCL-IWILVV-WRPHPNNP-------------------KIFF   77 (285)
Q Consensus        19 G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~-l~~fl~-~e~~~~~p-------------------~l~~   77 (285)
                      |.......++..++....|.+.++.|++..++...+..++. +..+.. .|+++++.                   ...+
T Consensus       132 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (385)
T TIGR00710       132 SILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEARIQISTYFETFLLLLKSKMFWGY  211 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCCHHHHHHHHHHHHcCchhHHH
Confidence            34444566666777788888888889875554433333333 222222 22211110                   0000


Q ss_pred             HH------------hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHH
Q psy4795          78 TI------------SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVV  143 (285)
Q Consensus        78 ~~------------~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~  143 (285)
                      ..            ..+.|.|+++..|.  .+.|++.....++..+++++.|+++||+|||+.+..+..+..++...+..
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (385)
T TIGR00710       212 ALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEI  291 (385)
T ss_pred             HHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            00            11236677766776  56888999999999999999999999999999988887766665544332


Q ss_pred             hC-CCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHH-HHHHHHHHh
Q psy4795         144 WR-PHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESV-GFVIAYAYS  206 (285)
Q Consensus       144 ~~-p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~l-G~~ig~~~s  206 (285)
                      .. +..++.+..+....+.|++.+...+.......+.+|++++++.++++..+.. |...+...+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       292 TAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            21 1123344455557778899998888888888888887779999988877765 555555544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.19  E-value=5.9e-10  Score=105.08  Aligned_cols=118  Identities=15%  Similarity=0.068  Sum_probs=99.7

Q ss_pred             hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhh
Q psy4795          89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDA  166 (285)
Q Consensus        89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g  166 (285)
                      +.+|.  .++|++...+.++..+++++.|+++||+|||+++..+.++..++.+...+    .++++.+++..++.|++.+
T Consensus        43 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~G~~~~  118 (406)
T PRK11551         43 QEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQ----AWDFPSLLVARLLTGVGLG  118 (406)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhHH
Confidence            34565  57899999999999999999999999999999999998877766554433    2456778888999999999


Q ss_pred             hhhcccccceeeecccc-chhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         167 VWQTQVNGLYGTLFRRN-KEAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       167 ~~~~~~~ali~~~fp~~-~~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      ...+..++++.+.+|++ ++.+.++++...++|..++..++..+.
T Consensus       119 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  163 (406)
T PRK11551        119 GALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA  163 (406)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999765 599999999999999999988876543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.19  E-value=2.3e-09  Score=98.43  Aligned_cols=120  Identities=16%  Similarity=0.140  Sum_probs=94.2

Q ss_pred             ccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhh
Q psy4795          90 ALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAV  167 (285)
Q Consensus        90 ~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~  167 (285)
                      .+|.  ++.+......+++..+++++.|+++||+|||+.+.++.++..++...+.. .+ ..+.+..+....+.|++.+.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~g~~~g~  311 (377)
T TIGR00890       234 SLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLF-IP-MLNDVLFLATVALVFFTWGG  311 (377)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH-cc-cchhHHHHHHHHHHHHHhcc
Confidence            3555  46788899999999999999999999999999998888777776655433 22 12223344445677888887


Q ss_pred             hhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         168 WQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       168 ~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      .++..+++..+.+|+++ +++.+.++...++|..++..+.+.+..
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~  356 (377)
T TIGR00890       312 TISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT  356 (377)
T ss_pred             chhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77778888999998776 999999999999999999998887653

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.19  E-value=2.8e-10  Score=108.92  Aligned_cols=121  Identities=13%  Similarity=0.072  Sum_probs=104.0

Q ss_pred             hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhh
Q psy4795          88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGD  165 (285)
Q Consensus        88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~  165 (285)
                      ++.+|.  .+.|++...+.++..++++..|++.||+|||+++..+.++..++........ ..++++.+++..++.|+|.
T Consensus        30 ~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~-~~~~~~~~l~~~~l~G~g~  108 (410)
T TIGR00885        30 QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAA-EIMNYTLFLVGLFILTAGL  108 (410)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHhhH
Confidence            566666  5799999999999999999999999999999999999998888765543222 2456778888899999999


Q ss_pred             hhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         166 AVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       166 g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                      |..++..|+++.+..|+++ +...++.+..+++|..+|..+++.+
T Consensus       109 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l  153 (410)
T TIGR00885       109 GFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQL  153 (410)
T ss_pred             HHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888766 8889999999999999999998776

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.18  E-value=5.5e-09  Score=98.32  Aligned_cols=203  Identities=15%  Similarity=0.071  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHHHHH-hcccCCC-------------------Cc-chHHH-
Q psy4795          21 VMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILV-VWRPHPN-------------------NP-KIFFT-   78 (285)
Q Consensus        21 il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~~fl-~~e~~~~-------------------~p-~l~~~-   78 (285)
                      .-....++..++.++.|.+.+++|++..++...+...+.++..+ ..|++|+                   ++ ...+. 
T Consensus       133 ~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  212 (382)
T PRK11128        133 VRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLLRPTIMPQGESRQQESAGWPAWKALLKEPTVWRFLL  212 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHccCCCCCccccccccccccchHHHHHcChhHHHHHH
Confidence            33444577778888888888899997655544433333222222 1121111                   00 00000 


Q ss_pred             -----------Hhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhC
Q psy4795          79 -----------ISGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWR  145 (285)
Q Consensus        79 -----------~~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~  145 (285)
                                 ...+.|.|.++ .|.  .+.|..+.+..++..+..++.|++.||+|+|+.+..+.+...+.++.+..  
T Consensus       213 ~~~l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~--  289 (382)
T PRK11128        213 CVSLLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGS--  289 (382)
T ss_pred             HHHHHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh--
Confidence                       01233566654 565  46888888889999999999999999999999999888877776554432  


Q ss_pred             CCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy4795         146 PHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFR-LWESVGFVIAYAYSTHLCARMKLYVMGVVLVT  224 (285)
Q Consensus       146 p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~-l~~~lG~~ig~~~s~~l~~~~~l~il~~~lv~  224 (285)
                        .++++.+++..+++|++.+..++....++.+..|+++++..+.++ +.+++|.++|..+++.+..+...+.......+
T Consensus       290 --~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~~~~~  367 (382)
T PRK11128        290 --TTALPWLIVIQILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWVMALV  367 (382)
T ss_pred             --hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence              346677788899999999999888888887775555577888776 66788889999999998765433333333333


Q ss_pred             HHHH
Q psy4795         225 GFCG  228 (285)
Q Consensus       225 ~~v~  228 (285)
                      +.++
T Consensus       368 ~~~~  371 (382)
T PRK11128        368 ALPA  371 (382)
T ss_pred             HHHH
Confidence            3343

>TIGR00896 CynX cyanate transporter

Probab=99.18  E-value=5.5e-10  Score=103.64  Aligned_cols=118  Identities=21%  Similarity=0.197  Sum_probs=98.4

Q ss_pred             hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhh
Q psy4795          88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGD  165 (285)
Q Consensus        88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~  165 (285)
                      ++.+|.  ++.|+....+.++..+++++.|+++||+|||+++..+.++..++.+.. .    .++.+.+++..++.|++.
T Consensus        27 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~g~  101 (355)
T TIGR00896        27 RSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S----APGTALLFAGTALIGVGI  101 (355)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H----hccHHHHHHHHHHHHHHH
Confidence            345565  679999999999999999999999999999999999887766655443 2    234567777788999999


Q ss_pred             hhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         166 AVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       166 g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      +...+..+..+.+.+|++++.+.+.++..+++|..++..+.+.+-
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~  146 (355)
T TIGR00896       102 AIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLA  146 (355)
T ss_pred             HHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998888888888989887799999999999999999988876653

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.18  E-value=5.6e-10  Score=107.61  Aligned_cols=119  Identities=10%  Similarity=0.169  Sum_probs=94.3

Q ss_pred             hhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q psy4795          86 YISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGV  163 (285)
Q Consensus        86 Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gi  163 (285)
                      |+.+. |.  .+.|+++..+.++..+++++.|+++||+|||+++..+.++..+..+.+.+.....++.+..++..++.|+
T Consensus        54 ~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi  132 (452)
T PRK11273         54 YLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW  132 (452)
T ss_pred             HHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHH
Confidence            34444 65  6789999999999999999999999999999999999888777766544432223456677777889999


Q ss_pred             hhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHH-HHHHH
Q psy4795         164 GDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFV-IAYAY  205 (285)
Q Consensus       164 g~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~-ig~~~  205 (285)
                      +.|...+.....+.+.+|+++ +.+.++++...++|.. .+..+
T Consensus       133 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~  176 (452)
T PRK11273        133 FQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLF  176 (452)
T ss_pred             HHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            999888888888888888765 9999999999998864 45554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.18  E-value=3e-09  Score=103.62  Aligned_cols=147  Identities=15%  Similarity=0.126  Sum_probs=92.8

Q ss_pred             hhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChh-----H--HHHHHHHHHHHHHHHHHhCCCCCChHH
Q psy4795          83 WGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSP-----L--MALGFIVHCCLIWILVVWRPHPNNPKI  153 (285)
Q Consensus        83 t~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~-----~--i~~g~~l~~i~~~~l~~~~p~~~~~~~  153 (285)
                      .|.|+.+..|.  ...+.+....++++.++.+++|+++||+|||+     .  ..+...+..+..  +....  .++.+.
T Consensus       275 ~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~--~~~~~--~~~~~~  350 (476)
T PLN00028        275 IAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFC--IWLGR--ANSLGA  350 (476)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHH--HHhcc--cchHHH
Confidence            36777766676  56888999999999999999999999998752     2  212222221111  22211  233444


Q ss_pred             HHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHHH
Q psy4795         154 FFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTH---LCARMKLYVMGVVLVTGFCGYV  230 (285)
Q Consensus       154 ~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~---l~~~~~l~il~~~lv~~~v~~~  230 (285)
                      ..+...+++++.+..++...++..+..|++++.+.++.+...++|..++..+-..   .....-+++..++++++.+...
T Consensus       351 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~  430 (476)
T PLN00028        351 AIVVMILFSIFVQAACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVA  430 (476)
T ss_pred             HHHHHHHHHHHHHHhhhhhcccCcccChhhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHH
Confidence            4445556666665566666666777777777888888877777777666444221   1123335566667777777777


Q ss_pred             HHH
Q psy4795         231 IVE  233 (285)
Q Consensus       231 ~~e  233 (285)
                      .+.
T Consensus       431 ~~~  433 (476)
T PLN00028        431 FIH  433 (476)
T ss_pred             hee
Confidence            765

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.17  E-value=5.3e-10  Score=107.26  Aligned_cols=117  Identities=10%  Similarity=0.143  Sum_probs=94.5

Q ss_pred             ch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhh
Q psy4795          92 GV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQ  169 (285)
Q Consensus        92 g~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~  169 (285)
                      |+  .+.|+.+..+.++..+++++.|+++||+|||+++..+.++..++.+.........++.+..++..++.|++.|...
T Consensus        57 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~  136 (438)
T TIGR00712        57 GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGW  136 (438)
T ss_pred             CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcch
Confidence            55  6789999999999999999999999999999999998888777765543321112345566666788899999888


Q ss_pred             cccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795         170 TQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTH  208 (285)
Q Consensus       170 ~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~  208 (285)
                      ++....+.+.+|+++ +.+.++++...++|..++..+.+.
T Consensus       137 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~  176 (438)
T TIGR00712       137 PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLL  176 (438)
T ss_pred             HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHH
Confidence            888899999997655 999999999999999888766443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG3097|consensus

Probab=99.17  E-value=6.8e-11  Score=108.40  Aligned_cols=98  Identities=54%  Similarity=1.054  Sum_probs=92.8

Q ss_pred             HHHhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHH
Q psy4795          77 FTISGLWGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFT  156 (285)
Q Consensus        77 ~~~~~ft~~Y~~~~lg~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~  156 (285)
                      |...+|++.|+.|.+|++++|++|.++++++.+++.+.|.|+.++||.+....+.+.|......+++|.|.+.+.+.+++
T Consensus       293 F~~~~fTk~~V~c~~Gv~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~l~li~~~~~w~~~~~~~~i~y~  372 (390)
T KOG3097|consen  293 FLCADFTKAYVACALGVSRIGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHLLLITILFFWAPNPQDSWIFYV  372 (390)
T ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence            34478999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhccccc
Q psy4795         157 ISGLWGVGDAVWQTQVNG  174 (285)
Q Consensus       157 ~~~l~Gig~g~~~~~~~a  174 (285)
                      ...+||+||+.|++++|.
T Consensus       373 ~aalwgv~d~vw~t~in~  390 (390)
T KOG3097|consen  373 AAALWGVGDAVWKTQING  390 (390)
T ss_pred             ehhhcCccHHHHHhhcCC
Confidence            999999999999999874

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.17  E-value=6.9e-09  Score=101.58  Aligned_cols=193  Identities=14%  Similarity=0.043  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHh-hhCchHHHHHHHHHHHHH-HHHHHhcccCCC----C--------cchHHH------
Q psy4795          19 GYVMICFGVVNAICSLLFGTLMK-FIGRSPLMALGFIVHCCL-IWILVVWRPHPN----N--------PKIFFT------   78 (285)
Q Consensus        19 G~il~~~gi~~~~~a~~~G~l~~-~~G~~~~~~~g~~~~~~~-l~~fl~~e~~~~----~--------p~l~~~------   78 (285)
                      |.....+.++..+.+...+.+.+ ..|||..++...+..++. +..+...||++.    .        +...+.      
T Consensus       146 ~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  225 (491)
T PRK11010        146 AISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPVPKTLEQAVVAPLRDFFGRNNAW  225 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCccccccccchhhhHHHHHHHHHcCcCHH
Confidence            44566667777777877788888 469986666544444443 222333343210    0        000000      


Q ss_pred             --H-------------hhhhhhhhhhccch--hHHHHHHH-HHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHH
Q psy4795          79 --I-------------SGLWGAYISCALGV--SSVGYVMI-CFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWI  140 (285)
Q Consensus        79 --~-------------~~ft~~Y~~~~lg~--~~~G~v~~-~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~  140 (285)
                        .             ..+.+.|+.+.+|.  ++.|++.. ...++.+++.+++|+++||+|||+.+.++.++..+..+.
T Consensus       226 ~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~  305 (491)
T PRK11010        226 LILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAG  305 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence              0             01235566666676  56787764 445799999999999999999998877766655554332


Q ss_pred             HHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         141 LVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       141 l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      .......+++.+......++..++.|+..+...++.++..|++. ++.+++.+...++|..++..+++.+..
T Consensus       306 ~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~  377 (491)
T PRK11010        306 YWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE  377 (491)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22111112344444444555444555555556777788887766 889999999999998877667766544

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.17  E-value=5e-09  Score=100.39  Aligned_cols=128  Identities=13%  Similarity=-0.014  Sum_probs=79.0

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISG  159 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~  159 (285)
                      |.|.|+.+.+|.  .+.+.......++..+++++.|+++||+|||+++..+.++..+...+.....+..++....+....
T Consensus       265 ~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (432)
T PRK10406        265 YMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVM  344 (432)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            457788777776  467777888888889999999999999999998877665543333332221121223333222222


Q ss_pred             HHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHH-HHHHHHHHhhhh
Q psy4795         160 LWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESV-GFVIAYAYSTHL  209 (285)
Q Consensus       160 l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~l-G~~ig~~~s~~l  209 (285)
                      +.+++.+...+..+++..|.||++. +++.++.+...++ +......+...+
T Consensus       345 ~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l  396 (432)
T PRK10406        345 CALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL  396 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH
Confidence            2233444455566778899999875 8999976655443 233344444444

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.16  E-value=2.6e-10  Score=109.76  Aligned_cols=115  Identities=11%  Similarity=0.002  Sum_probs=94.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHh--------CCCCCChHHHHHHHHHHHHhh
Q psy4795          94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW--------RPHPNNPKIFFTISGLWGVGD  165 (285)
Q Consensus        94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~--------~p~~~~~~~~~~~~~l~Gig~  165 (285)
                      .+.|++...+.++..+++++.|+++||+|||+++.++.++..++.+...+-        .++.+..+.+++..++.|++.
T Consensus        55 ~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~  134 (479)
T PRK10077         55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGV  134 (479)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhH
Confidence            578899999999999999999999999999999999988877665543321        011222455667889999999


Q ss_pred             hhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795         166 AVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTH  208 (285)
Q Consensus       166 g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~  208 (285)
                      |...+...+++.|.+|+++ +.+.+.++....+|..++...+..
T Consensus       135 g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~  178 (479)
T PRK10077        135 GLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYF  178 (479)
T ss_pred             hHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998765 999999999999999888776543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.16  E-value=2e-09  Score=110.22  Aligned_cols=119  Identities=15%  Similarity=0.148  Sum_probs=100.1

Q ss_pred             hhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q psy4795          86 YISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGV  163 (285)
Q Consensus        86 Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gi  163 (285)
                      ++++.+|+  .+.++++..+.++.+++++++|+++||+|||++++++.++..++.++..+    .++++.+++..++.|+
T Consensus       192 ~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~af----a~s~~~llv~R~l~G~  267 (742)
T TIGR01299       192 SAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSF----VQGYGFFLFCRLLSGF  267 (742)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHH
Confidence            34455665  57889999999999999999999999999999999998877776655544    2356788888999999


Q ss_pred             hhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795         164 GDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTH  208 (285)
Q Consensus       164 g~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~  208 (285)
                      +.|...+..++++.+.+|+++ +.+.+..+.+..+|..++..++..
T Consensus       268 g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~  313 (742)
T TIGR01299       268 GIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWA  313 (742)
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998766 899999999999999988876544

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.16  E-value=4.6e-10  Score=105.55  Aligned_cols=117  Identities=13%  Similarity=0.132  Sum_probs=97.9

Q ss_pred             ccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhh
Q psy4795          90 ALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAV  167 (285)
Q Consensus        90 ~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~  167 (285)
                      .+|.  .++++....+.++..+++++.|+++||+|||+.+..+.++..++......    .++.+..++..++.|++.+.
T Consensus        32 ~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~----~~~~~~~~~~~~l~g~~~~~  107 (392)
T PRK10473         32 DLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSL----AETSSLFLAGRFLQGIGAGC  107 (392)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHhhhhH
Confidence            3555  57889999999999999999999999999999999998887777655443    24566677778899999999


Q ss_pred             hhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         168 WQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       168 ~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      ..+..++++.+.+|+++ +.+.+.++...++|..++..++..+.
T Consensus       108 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~  151 (392)
T PRK10473        108 CYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM  151 (392)
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88889999999997655 99999999999999999888877653

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.16  E-value=7.2e-09  Score=99.40  Aligned_cols=128  Identities=15%  Similarity=-0.008  Sum_probs=80.1

Q ss_pred             hhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhccc--C-ChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHH
Q psy4795          83 WGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFI--G-RSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTI  157 (285)
Q Consensus        83 t~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDri--G-rk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~  157 (285)
                      .|.|+.+..|.  .+.+.....+.++..++.++.|+++||+  + |++......+...... ..+...+. .+.......
T Consensus       266 ~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~  343 (434)
T PRK11663        266 GNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSV-GSLWLMPF-ASYVMQAAC  343 (434)
T ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHH-HHHHHccc-ccHHHHHHH
Confidence            46777776777  4678889999999999999999999998  3 3333222211111112 11122232 233333333


Q ss_pred             HHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795         158 SGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       158 ~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~  212 (285)
                      .+++|++....++.......+.+|++. +.+.++.+...++|.+++....+.+-..
T Consensus       344 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~  399 (434)
T PRK11663        344 FFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEI  399 (434)
T ss_pred             HHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh
Confidence            444554332222223445678887655 9999999999999999998887776543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.16  E-value=8.7e-09  Score=100.13  Aligned_cols=126  Identities=18%  Similarity=0.167  Sum_probs=94.5

Q ss_pred             hhhhhhccch-hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHh-CCCCCChHHHHHHHHHH
Q psy4795          84 GAYISCALGV-SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW-RPHPNNPKIFFTISGLW  161 (285)
Q Consensus        84 ~~Y~~~~lg~-~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~-~p~~~~~~~~~~~~~l~  161 (285)
                      +.|.+..++. +..+.++...+++.+++.++.++++||+|+|+.+..+.++..++.+..+.. ...+++.+.+++..++.
T Consensus       255 ~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~  334 (473)
T PRK10429        255 IYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILL  334 (473)
T ss_pred             eeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence            3344444454 456677777889999999999999999999999988887656554443322 11234566677777888


Q ss_pred             HHhhhhhhcccccceeeecc-------ccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         162 GVGDAVWQTQVNGLYGTLFR-------RNK-EAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       162 Gig~g~~~~~~~ali~~~fp-------~~~-~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                      |++.+..++...+++.|..|       +++ +..+|.+.+.+.+|+++|..+.+.+
T Consensus       335 g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~  390 (473)
T PRK10429        335 NIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV  390 (473)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999865       233 5689999999999999998877664

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.15  E-value=5.8e-09  Score=97.06  Aligned_cols=188  Identities=11%  Similarity=0.083  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHH-HHHH-HhcccCCCC---c------------------chH
Q psy4795          20 YVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCL-IWIL-VVWRPHPNN---P------------------KIF   76 (285)
Q Consensus        20 ~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~-l~~f-l~~e~~~~~---p------------------~l~   76 (285)
                      .......++..+..+..+.+.++.|++..++...++.++. +... ...|+++++   +                  ...
T Consensus       119 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (377)
T PRK11102        119 FVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLPKERRQPFHLRTTIRNFASLFRHKRVLG  198 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCcccccCCCChHHHHHHHHHHHcChHHHH
Confidence            3344556667777778888888889875555444444333 2222 222321110   0                  000


Q ss_pred             HHH------------hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHH
Q psy4795          77 FTI------------SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILV  142 (285)
Q Consensus        77 ~~~------------~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~  142 (285)
                      +..            ..+.|.|..+..|.  .+.|++....+++..+++++.|++.||+|||+.+..+..+..+..+.+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~  278 (377)
T PRK11102        199 YMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLV  278 (377)
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            000            00124455555565  5788999999999999999999999999999999888776544332222


Q ss_pred             HhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHH-HHHHHHHHHHhh
Q psy4795         143 VWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWE-SVGFVIAYAYST  207 (285)
Q Consensus       143 ~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~-~lG~~ig~~~s~  207 (285)
                      .....+.+.+...+...+.+.+.+...+.....+.+..|++++.+.+.++..+ .+|..++...+.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        279 VSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11111223444444444555555665655566677778877788888766553 466666666543

>TIGR00897 2A0118 polyol permease family

Probab=99.15  E-value=1.2e-08  Score=96.85  Aligned_cols=130  Identities=17%  Similarity=0.153  Sum_probs=92.9

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHH-HHHHHHHHHHHHHHHhC-CCCCChHHHHHH
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMA-LGFIVHCCLIWILVVWR-PHPNNPKIFFTI  157 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~-~g~~l~~i~~~~l~~~~-p~~~~~~~~~~~  157 (285)
                      |.|.|.+. +|.  .+.+.+....++++.+++++.|+++||+|||+... .+.+...++...+.... ...++.+..++.
T Consensus       244 ~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~  322 (402)
T TIGR00897       244 FLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALII  322 (402)
T ss_pred             HHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHH
Confidence            45777754 676  45678888899999999999999999999988764 33333333222222211 112345666677


Q ss_pred             HHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy4795         158 SGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCARM  213 (285)
Q Consensus       158 ~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~~  213 (285)
                      .+++|++.+...+ ..+.+.+..|++++.+.++++..+++|..++..+.+.+...+
T Consensus       323 ~~~~G~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~  377 (402)
T TIGR00897       323 AIALGIFLAGYVP-LAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF  377 (402)
T ss_pred             HHHHHHHHHHHHH-HHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            8888988877654 455666777777799999999999999999999988876553

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.15  E-value=2e-09  Score=99.72  Aligned_cols=178  Identities=11%  Similarity=0.034  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhhC--------chHHHHHHHHHHHHHHHH-HH-hcccCCCC----------------
Q psy4795          19 GYVMICFGVVNAICSLLFGTLMKFIG--------RSPLMALGFIVHCCLIWI-LV-VWRPHPNN----------------   72 (285)
Q Consensus        19 G~il~~~gi~~~~~a~~~G~l~~~~G--------~~~~~~~g~~~~~~~l~~-fl-~~e~~~~~----------------   72 (285)
                      |....++.++..+++.+.+.+..+.|        ||..++.+.+..++.+.. +. ..||+.+.                
T Consensus       122 ~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~  201 (356)
T TIGR00901       122 TIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVPKPLTQAVLKPIRE  201 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHH
Confidence            45566777788888888888888888        887777666655554332 22 22332110                


Q ss_pred             ----c----chHHHH------------hhhhhhhhhhccch--hHHHHHHHHHH-HHHHHHHhhhhhhhcccCChhHHHH
Q psy4795          73 ----P----KIFFTI------------SGLWGAYISCALGV--SSVGYVMICFG-VVNAICSLLFGTLMKFIGRSPLMAL  129 (285)
Q Consensus        73 ----p----~l~~~~------------~~ft~~Y~~~~lg~--~~~G~v~~~~g-v~~~i~s~l~G~LsDriGrk~~i~~  129 (285)
                          +    ......            ..+.|.|+++ +|.  ++.|.+..+.+ +...++.+++|+++||+|||+.+..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~  280 (356)
T TIGR00901       202 FFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLL  280 (356)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence                0    000000            0123677766 666  56777777666 5778999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHhCCCC-------CChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHH
Q psy4795         130 GFIVHCCLIWILVVWRPHP-------NNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESV  197 (285)
Q Consensus       130 g~~l~~i~~~~l~~~~p~~-------~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~l  197 (285)
                      +.++..+......+..++.       ++.+......++.+++.+..++..++++.+.+|+++ ++.+++++..+|+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~  356 (356)
T TIGR00901       281 FGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSAL  356 (356)
T ss_pred             HHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC
Confidence            8877766655433322212       345666777788899999999999999999999877 9999998877663

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.15  E-value=9.6e-09  Score=96.59  Aligned_cols=123  Identities=11%  Similarity=-0.026  Sum_probs=79.3

Q ss_pred             hhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q psy4795          84 GAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLW  161 (285)
Q Consensus        84 ~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~  161 (285)
                      |.|.++.+|.  .+.+..++..+++.+++.++.|++.||+|||+.+..+.++..++...+....  ..+...........
T Consensus       227 ~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~  304 (392)
T PRK10473        227 PVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP--SHAVSLFGITLICA  304 (392)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence            5566666676  4678899999999999999999999999999999988877666655544422  11112222223333


Q ss_pred             HHhhhhhhcccccceeeeccc-cc-hhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795         162 GVGDAVWQTQVNGLYGTLFRR-NK-EAAFSNFRLWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       162 Gig~g~~~~~~~ali~~~fp~-~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~  212 (285)
                      |++.+.-.+.    .....|. ++ +.+.+.+.+.+.+|..++..+.+.+...
T Consensus       305 g~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~~g~~  353 (392)
T PRK10473        305 GFSVGFGVAM----SQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVLGIS  353 (392)
T ss_pred             HHHHHhHHHH----HHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            4433322211    1223343 23 7777788888888888887776665443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.15  E-value=4.5e-09  Score=112.14  Aligned_cols=194  Identities=9%  Similarity=-0.063  Sum_probs=136.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHHHHHhc-ccCCCC-----------------------
Q psy4795          17 SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW-RPHPNN-----------------------   72 (285)
Q Consensus        17 ~~G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~~fl~~-e~~~~~-----------------------   72 (285)
                      ..|....+..++..++.++.|.+....|++..++...+..++.++....+ ++++..                       
T Consensus       145 a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (1140)
T PRK06814        145 ANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNAAPDLKIDRNIIRSTITLLKYAKAD  224 (1140)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCeeccchHHHHHHHHHHHhcC
Confidence            34677788888999999999999998888766544444444332222222 221110                       


Q ss_pred             cchH-HH------------Hhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHH
Q psy4795          73 PKIF-FT------------ISGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCL  137 (285)
Q Consensus        73 p~l~-~~------------~~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~  137 (285)
                      +.+. ..            ...+.|.|+++.+|.  ...|+++..++++.++++++.|+++||.++++.+..+.++..++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~  304 (1140)
T PRK06814        225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLF  304 (1140)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHH
Confidence            0000 00            011348888888877  56889999999999999999999998877777666665554443


Q ss_pred             HHHHHHhC----------------CCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHH
Q psy4795         138 IWILVVWR----------------PHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFV  200 (285)
Q Consensus       138 ~~~l~~~~----------------p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~  200 (285)
                      .+.+.+..                ...++.+.+.+..+++|++.+..+++.++++.+.+|++. +.+++.+++..++|+.
T Consensus       305 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~  384 (1140)
T PRK06814        305 GLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMV  384 (1140)
T ss_pred             HHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHH
Confidence            33222210                001345667777888999999999999999999998876 9999999999999999


Q ss_pred             HHHHHhhhhh
Q psy4795         201 IAYAYSTHLC  210 (285)
Q Consensus       201 ig~~~s~~l~  210 (285)
                      +|....+.+.
T Consensus       385 ig~~~~g~l~  394 (1140)
T PRK06814        385 AGTIILALLQ  394 (1140)
T ss_pred             HHHHHHHHHH
Confidence            9998877765

>PRK10504 putative transporter; Provisional

Probab=99.13  E-value=6.2e-10  Score=107.28  Aligned_cols=125  Identities=16%  Similarity=0.113  Sum_probs=103.4

Q ss_pred             hhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q psy4795          81 GLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTIS  158 (285)
Q Consensus        81 ~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~  158 (285)
                      ...|.|.++ +|.  .+.|++...+.++..++++++|+++||+|||+++..+.++..++.+....    .++.+.+++..
T Consensus        31 ~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~  105 (471)
T PRK10504         31 TALPSMAQS-LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCAL----SGTLNELLLAR  105 (471)
T ss_pred             HHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH----hCCHHHHHHHH
Confidence            345666554 777  46788889999999999999999999999999999887777666654433    24567777889


Q ss_pred             HHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         159 GLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       159 ~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      ++.|++.+...+...+.+.+.+|+++ +.+.+.++...++|..+|..+++.+.
T Consensus       106 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~  158 (471)
T PRK10504        106 VLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV  158 (471)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            99999999999999999999998766 89999999999999999999887764

>PRK11043 putative transporter; Provisional

Probab=99.13  E-value=8.1e-10  Score=104.20  Aligned_cols=120  Identities=17%  Similarity=0.146  Sum_probs=97.8

Q ss_pred             hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhh
Q psy4795          88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGD  165 (285)
Q Consensus        88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~  165 (285)
                      ++.+|.  .++|+....+.++..+++++.|+++||+|||+++..+..+..++.+....    .++.+.+++..++.|++.
T Consensus        33 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~l~G~~~  108 (401)
T PRK11043         33 QADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLW----VESAAQLLVLRFVQAVGV  108 (401)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhh
Confidence            345565  57899999999999999999999999999999999988877766655443    245677777788889988


Q ss_pred             hhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         166 AVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       166 g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      +...+...+++.+.+|+++ ..+++......++|.+++..+++.+..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~  155 (401)
T PRK11043        109 CSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN  155 (401)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8777777888899998876 788888888888898898888877643

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.13  E-value=3.3e-10  Score=107.43  Aligned_cols=112  Identities=13%  Similarity=0.153  Sum_probs=95.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795          94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN  173 (285)
Q Consensus        94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~  173 (285)
                      .+.+++...+.+...+.+++.|+++||+|||+++..+.++..++.+.+... +   ++   ++..++.|++.+...+...
T Consensus        38 ~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~-~---~~---~~~r~l~G~~~a~~~pa~~  110 (393)
T PRK11195         38 WSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG-I---HP---LLAYGLVGIGAAAYSPAKY  110 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH-H---HH---HHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999998877665544332 1   22   4456788999999999999


Q ss_pred             cceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795         174 GLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       174 ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~  212 (285)
                      +++.+.+|+++ +.+.+......++|..+|..+++.+...
T Consensus       111 a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~  150 (393)
T PRK11195        111 GILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP  150 (393)
T ss_pred             HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999876 9999999999999999999999887553

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.13  E-value=1.4e-08  Score=96.27  Aligned_cols=190  Identities=13%  Similarity=0.122  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHHHHHh-c-ccCC-C------------Ccch-HH-HH-
Q psy4795          18 VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVV-W-RPHP-N------------NPKI-FF-TI-   79 (285)
Q Consensus        18 ~G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~~fl~-~-e~~~-~------------~p~l-~~-~~-   79 (285)
                      .|......+++..++.++.+.+.+.+|++..++...++.++.+..... . |++. +            +|.+ .. .. 
T Consensus       146 ~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  225 (394)
T PRK10213        146 LSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPSHQKQNTFRLLQRPGVMAGMIAI  225 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcccccchhHHHHHhcCHHHHHHHHHH
Confidence            344555566777788888888888899976665544444443222221 1 2111 0            1100 00 00 


Q ss_pred             ----------hhh-hhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCC
Q psy4795          80 ----------SGL-WGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRP  146 (285)
Q Consensus        80 ----------~~f-t~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p  146 (285)
                                ..+ .|.|. +..|.  ...|+.+...+++..+++++.|++.||.+|+.++. +..+.......+..+  
T Consensus       226 ~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~-~~~~~~~~~~~l~~~--  301 (394)
T PRK10213        226 FMSFAGQFAFFTYIRPVYM-NLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAG-APLVLAVSALVLTLW--  301 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH-HHHHHHHHHHHHHHH--
Confidence                      012 24454 34565  56889999999999999999999999965443343 333333332222222  


Q ss_pred             CCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795         147 HPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       147 ~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~  212 (285)
                       .++.+......+++|++.+..++..++.+.+..|++.+.+.+.+....++|..+|..+++.+...
T Consensus       302 -~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~  366 (394)
T PRK10213        302 -GSDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALDN  366 (394)
T ss_pred             -hhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             23456677778899999999999999999888887667888888889999999999999998764

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.13  E-value=1.4e-09  Score=98.55  Aligned_cols=114  Identities=20%  Similarity=0.261  Sum_probs=101.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795          94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN  173 (285)
Q Consensus        94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~  173 (285)
                      .+.+++.....++..+++++.|+++||+|||+.+..+.++..++.+.....    ++.+..++..++.|++.+...+..+
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~~  109 (352)
T cd06174          34 SQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA----SSLWLLLVGRFLLGLGGGALYPAAA  109 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHcccccccHhHH
Confidence            678999999999999999999999999999999999999888877665542    4577888889999999999999999


Q ss_pred             cceeeecccc-chhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         174 GLYGTLFRRN-KEAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       174 ali~~~fp~~-~~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      +++.+.+|++ ++.+++..+...++|..++..+++.+..
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  148 (352)
T cd06174         110 ALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE  148 (352)
T ss_pred             HHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999875 4999999999999999999999887654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.13  E-value=1.1e-08  Score=96.33  Aligned_cols=140  Identities=13%  Similarity=0.026  Sum_probs=96.9

Q ss_pred             hhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q psy4795          84 GAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLW  161 (285)
Q Consensus        84 ~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~  161 (285)
                      +.|+++.+|.  .+.|+......++..+++++.+++.||.+|+...................+.. ..+.+.......+.
T Consensus       231 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  309 (394)
T PRK11652        231 GVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFG-VMNVWTLLVPAALF  309 (394)
T ss_pred             hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHH
Confidence            4566676776  46788888888999999999999999998433332222211111111111111 23446666677888


Q ss_pred             HHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy4795         162 GVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVT  224 (285)
Q Consensus       162 Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~~~l~il~~~lv~  224 (285)
                      |++.+..++..++...+.+|++++.+.++.+..+++|..++..+.+.+..+..........+.
T Consensus       310 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (394)
T PRK11652        310 FFGAGMLFPLATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQFSLGLLMTLM  372 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHH
Confidence            999999999999999899998889999999999999999999988887655444443333333

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.13  E-value=4.5e-10  Score=105.57  Aligned_cols=126  Identities=16%  Similarity=0.081  Sum_probs=103.9

Q ss_pred             hhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q psy4795          81 GLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTIS  158 (285)
Q Consensus        81 ~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~  158 (285)
                      .+.|.|..+ +|.  .++|+++..+.++..+++++.|+++||+|||+.+..+.++..++.....+    .++++.+++..
T Consensus        27 ~~lp~~~~~-~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~  101 (381)
T PRK03633         27 TLVPLWLAQ-EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGL----MVGFWSWLAWR  101 (381)
T ss_pred             HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccHHHHHHHH
Confidence            345556553 465  58999999999999999999999999999999999998887776655443    24578888889


Q ss_pred             HHHHHhhhhhhcccccceeeeccc-cchhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         159 GLWGVGDAVWQTQVNGLYGTLFRR-NKEAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       159 ~l~Gig~g~~~~~~~ali~~~fp~-~~~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      ++.|++.+...+...+.+.+..|+ +++.+++.++...++|.++|..+++.+..
T Consensus       102 ~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~  155 (381)
T PRK03633        102 FVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST  155 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999888877777777765 44999999999999999999999887644

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.13  E-value=5.6e-10  Score=105.03  Aligned_cols=119  Identities=8%  Similarity=0.053  Sum_probs=100.9

Q ss_pred             hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhh
Q psy4795          89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDA  166 (285)
Q Consensus        89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g  166 (285)
                      +.+|.  .+.|+....+.++..+++++.|+++||+|||+++..+.++..++.+....    .++++.+++..++.|++.+
T Consensus        31 ~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~----~~~~~~l~~~r~l~G~~~~  106 (382)
T PRK10091         31 HDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTL----SSSYLMLAIGRLVSGFPHG  106 (382)
T ss_pred             HHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHhhhH
Confidence            44565  57899999999999999999999999999999999999888877765544    3467888888999999999


Q ss_pred             hhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         167 VWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       167 ~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      ...+..++.+.+.+|+++ +.+.+.+....++|..+|..+++.+..
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~  152 (382)
T PRK10091        107 AFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ  152 (382)
T ss_pred             HHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh
Confidence            988888888889998765 889999999999999998888777643

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.13  E-value=2.5e-10  Score=107.77  Aligned_cols=130  Identities=15%  Similarity=0.179  Sum_probs=92.1

Q ss_pred             hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHH--HhCCCC--CChHH
Q psy4795          80 SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILV--VWRPHP--NNPKI  153 (285)
Q Consensus        80 ~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~--~~~p~~--~~~~~  153 (285)
                      ..+.|.|+++.+|.  .++|+++..+.++..+++++.|+++||+|||+.++.+.+...+......  ...+..  +..+.
T Consensus        22 ~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (396)
T TIGR00882        22 FPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVG  101 (396)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            34677888888776  5799999999999999999999999999999999887665554433221  111100  11222


Q ss_pred             HHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         154 FFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       154 ~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      ..+..++.|++.+...+..+++..+.- ++++..++..+.+.++|.++|..+++.+.
T Consensus       102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~g~l~  157 (396)
T TIGR00882       102 AIVGGLYLGFVFSAGAGAIEAYIEKVS-RNSNFEYGKARMFGCVGWALCASIAGILF  157 (396)
T ss_pred             HHHHHHHHHHHhccchhhHHHHHHHhh-hhcccccchhhhhcccHHHHHHHHHhhhh
Confidence            334456667777777666666554432 23356788999999999999999988763

>TIGR00897 2A0118 polyol permease family

Probab=99.13  E-value=1.4e-09  Score=103.08  Aligned_cols=125  Identities=18%  Similarity=0.319  Sum_probs=96.2

Q ss_pred             hhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q psy4795          84 GAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLW  161 (285)
Q Consensus        84 ~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~  161 (285)
                      +.|.++ +|.  .++|+.+..+.++..+++++.|+++||+|||+++..+.++..++...........++++..++..++.
T Consensus        37 ~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~  115 (402)
T TIGR00897        37 SPFLKA-LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIR  115 (402)
T ss_pred             HHHHHH-hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHH
Confidence            444433 455  68999999999999999999999999999999999998887776544322111123566777778888


Q ss_pred             HHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHH-HHHHHHhhhh
Q psy4795         162 GVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGF-VIAYAYSTHL  209 (285)
Q Consensus       162 Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~-~ig~~~s~~l  209 (285)
                      |++.+...+...+.+.+.+|+++ +.+.+.++...++|. .+|..+++.+
T Consensus       116 G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l  165 (402)
T TIGR00897       116 GLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYA  165 (402)
T ss_pred             HcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99888877777777778876654 999999999999997 5777776554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.11  E-value=1e-09  Score=104.85  Aligned_cols=119  Identities=14%  Similarity=0.062  Sum_probs=98.8

Q ss_pred             hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhh
Q psy4795          89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDA  166 (285)
Q Consensus        89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g  166 (285)
                      +.+|.  ..+++....+.++..+++++.|+++||+|||+++..+.++..++.+....    .++.+.+++..++.|++.+
T Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~----a~~~~~l~~~r~l~Gi~~~  119 (413)
T PRK15403         44 RDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF----TTSMTQFLIARFIQGTSIC  119 (413)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHH
Confidence            34455  56778889999999999999999999999999999998887776655544    3467788888999999988


Q ss_pred             hhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         167 VWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       167 ~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      ...+...+.+.+.+|+++ ..+.+......++|..+|..+++.+..
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~  165 (413)
T PRK15403        120 FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH  165 (413)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777767778888998766 889999999999999999999887653

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.11  E-value=1e-09  Score=106.28  Aligned_cols=120  Identities=13%  Similarity=0.063  Sum_probs=102.0

Q ss_pred             hhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHh
Q psy4795          87 ISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVG  164 (285)
Q Consensus        87 ~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig  164 (285)
                      +.+.+|.  .+.++.+..+.++..+++++.|+++||+|||+++..+.++..++.+.+.+    .++++.+++..++.|++
T Consensus        46 i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~l~G~~  121 (496)
T PRK03893         46 VQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGF----APGYWTLFIARLVIGMG  121 (496)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHH
Confidence            3455666  56889999999999999999999999999999999998887777665544    24677788889999999


Q ss_pred             hhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         165 DAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       165 ~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      .+..++..++++.+.+|+++ +.+.+.++...++|..++..+++.+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  168 (496)
T PRK03893        122 MAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV  168 (496)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999998766 89999999999999999988877653

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.11  E-value=1.5e-08  Score=95.90  Aligned_cols=126  Identities=13%  Similarity=0.017  Sum_probs=93.7

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISG  159 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~  159 (285)
                      +.|.|+++ .|.  .+.|+....+++++++++++.|+++||+|||+.+..+..+..++...+.. .+ ++. ...  ...
T Consensus       227 ~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~-~~~--~~~  300 (393)
T PRK09705        227 WLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIW-LP-LQL-PVL--WAM  300 (393)
T ss_pred             HHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH-cc-chH-HHH--HHH
Confidence            34777766 576  46889999999999999999999999999999998887777666554432 33 122 222  234


Q ss_pred             HHHHhhhhhhcccccceeeecc-ccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy4795         160 LWGVGDAVWQTQVNGLYGTLFR-RNK-EAAFSNFRLWESVGFVIAYAYSTHLCARM  213 (285)
Q Consensus       160 l~Gig~g~~~~~~~ali~~~fp-~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~  213 (285)
                      +.|++.+...+..+....+.++ ++. +.+++..+...+++..++..+.+.+..++
T Consensus       301 l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~  356 (393)
T PRK09705        301 VCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS  356 (393)
T ss_pred             HHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5677777777777767777774 333 88899999999999999998888876654

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.11  E-value=8.6e-09  Score=100.77  Aligned_cols=152  Identities=18%  Similarity=0.256  Sum_probs=118.9

Q ss_pred             hhhhhhccchh--HHHHHHHHHHHHHHHHHhhhhhhhcccCCh--hHHHHHHHHHHH-HHHHHHHhCC---CCCChHHHH
Q psy4795          84 GAYISCALGVS--SVGYVMICFGVVNAICSLLFGTLMKFIGRS--PLMALGFIVHCC-LIWILVVWRP---HPNNPKIFF  155 (285)
Q Consensus        84 ~~Y~~~~lg~~--~~G~v~~~~gv~~~i~s~l~G~LsDriGrk--~~i~~g~~l~~i-~~~~l~~~~p---~~~~~~~~~  155 (285)
                      ..|.++.+|++  +...+.++..+..++|+.++|++.||+|.|  +++..+.++..+ +...++-..+   ..++.+.++
T Consensus       305 ~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~  384 (477)
T PF11700_consen  305 GIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFW  384 (477)
T ss_pred             HHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHH
Confidence            67777788884  566788899999999999999999999999  888777766533 3333331111   124567888


Q ss_pred             HHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHH-----HHHHHHHHHHHHHHHH
Q psy4795         156 TISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARM-----KLYVMGVVLVTGFCGY  229 (285)
Q Consensus       156 ~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~-----~l~il~~~lv~~~v~~  229 (285)
                      +...++|+..|..|+..-++++++.|+++ ++-|++|.+..-..+.+|+++-+.+...+     -+..++++++++.+..
T Consensus       385 ~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll  464 (477)
T PF11700_consen  385 VLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL  464 (477)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999988 99999999999999999999887765443     3556666677777776


Q ss_pred             HHHHHH
Q psy4795         230 VIVEVR  235 (285)
Q Consensus       230 ~~~e~~  235 (285)
                      ..++..
T Consensus       465 ~~v~~~  470 (477)
T PF11700_consen  465 FFVDVE  470 (477)
T ss_pred             hhccch
Confidence            655543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.11  E-value=9.4e-10  Score=104.51  Aligned_cols=126  Identities=18%  Similarity=0.031  Sum_probs=100.9

Q ss_pred             hhhhhhc-cchhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHH--hCCCCCChHHHHHHHHH
Q psy4795          84 GAYISCA-LGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVV--WRPHPNNPKIFFTISGL  160 (285)
Q Consensus        84 ~~Y~~~~-lg~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~--~~p~~~~~~~~~~~~~l  160 (285)
                      |.|.++. ....+.|++...+.++..+++++.|+++||+|||+++..+.++..++...+..  ... .++++.+++..++
T Consensus        41 ~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~  119 (417)
T PRK10489         41 PVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLP-EPSLLAIYLLGLW  119 (417)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence            4444432 22357899999999999999999999999999999998887776665543321  122 3456777778888


Q ss_pred             HHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         161 WGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       161 ~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      .|++.+...++.++.+.+.+|+++ +.+.+.++...++|..+|..+++.+.
T Consensus       120 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~  170 (417)
T PRK10489        120 DGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI  170 (417)
T ss_pred             HHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence            999999999999999999998766 89999999999999999999988764

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.11  E-value=2.3e-10  Score=90.08  Aligned_cols=108  Identities=17%  Similarity=0.239  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeee
Q psy4795         100 MICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTL  179 (285)
Q Consensus       100 ~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~  179 (285)
                      +..++++..+++++.|++.||+|||+.+..+.....++.+....    .++.+...+..++.|++.+..++..++.+.+.
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   79 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFAL----SSNITVLIIARFLQGFGAAFALVAGAALIADI   79 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            34567889999999999999999999999888877766655433    24567777788999999999999999999999


Q ss_pred             ccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         180 FRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       180 fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      +|+++ +.+.+..+...++|..++..+.+.+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  112 (141)
T TIGR00880        80 YPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ  112 (141)
T ss_pred             CChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc
Confidence            98765 999999999999999999999887753

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.11  E-value=2.3e-08  Score=94.13  Aligned_cols=190  Identities=13%  Similarity=0.007  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHHH-HHhcccCCCC-----------------cch-HH-----
Q psy4795          22 MICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWI-LVVWRPHPNN-----------------PKI-FF-----   77 (285)
Q Consensus        22 l~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~~-fl~~e~~~~~-----------------p~l-~~-----   77 (285)
                      .....++..++....+.+.+++|++.+++...++..+..+. +...|+++++                 |.. ..     
T Consensus       139 ~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  218 (390)
T TIGR02718       139 IAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVASPEAPLARRASLFRFFRRPLAWSLLALAL  218 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCccccchhhHHHHHHHHcCcCHHHHHHHHH
Confidence            34445666777777778889999986666555555443222 2232321110                 100 00     


Q ss_pred             HH-------hhhhhhhhhhccch--hHHHHHHHHHHH-HHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHH-hC-
Q psy4795          78 TI-------SGLWGAYISCALGV--SSVGYVMICFGV-VNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVV-WR-  145 (285)
Q Consensus        78 ~~-------~~ft~~Y~~~~lg~--~~~G~v~~~~gv-~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~-~~-  145 (285)
                      ..       ..+.+.|+.+ .|.  +++|++....++ ...++.++.|++.||+|+|+.+..+..+..+....... .. 
T Consensus       219 l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~  297 (390)
T TIGR02718       219 LSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAF  297 (390)
T ss_pred             HHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            00       1134667766 466  578888887775 55667889999999999999998877665333222221 11 


Q ss_pred             CCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccc-cc-hhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795         146 PHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRR-NK-EAAFSNFRLWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       146 p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~-~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~  212 (285)
                      ...++.+..+....+.+++.+..++..++...+..++ +. ++.++.++...++|..+|..+++.+..+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~  366 (390)
T TIGR02718       298 WLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR  366 (390)
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1122334444444555667777777777777777654 44 9999999999999999999999987654

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.10  E-value=3.1e-08  Score=93.84  Aligned_cols=192  Identities=17%  Similarity=0.096  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhh-hCchHHHHHHHHHHHHH-HHHHHhcccCCCC--c-c------hHH---------
Q psy4795          18 VGYVMICFGVVNAICSLLFGTLMKF-IGRSPLMALGFIVHCCL-IWILVVWRPHPNN--P-K------IFF---------   77 (285)
Q Consensus        18 ~G~il~~~gi~~~~~a~~~G~l~~~-~G~~~~~~~g~~~~~~~-l~~fl~~e~~~~~--p-~------l~~---------   77 (285)
                      .|.....++++..+.+.+.+.+.++ .|++..++...++.++. +..+...||+..+  . .      -.+         
T Consensus       132 ~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~  211 (402)
T PRK11902        132 AAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEVPARPPRSLGEAVVGPLRDFFSRRGA  211 (402)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHHHHHHHhCcCH
Confidence            3455566777888888877888776 48876665544444433 2222233332110  0 0      000         


Q ss_pred             ---HH-------h-----hhhhhhhhhccch--hHHHHHHHHHHH-HHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHH
Q psy4795          78 ---TI-------S-----GLWGAYISCALGV--SSVGYVMICFGV-VNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIW  139 (285)
Q Consensus        78 ---~~-------~-----~ft~~Y~~~~lg~--~~~G~v~~~~gv-~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~  139 (285)
                         ..       .     .+.+.|+.+.+|.  ++.|+++...++ +.+++.+++|++.||+|||+.+..+..+..+..+
T Consensus       212 ~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l  291 (402)
T PRK11902        212 WALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNL  291 (402)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence               00       0     1123345565676  467777766554 6899999999999999999988777766555443


Q ss_pred             HHHHhCCCCCChHHHHHHH----HHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795         140 ILVVWRPHPNNPKIFFTIS----GLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       140 ~l~~~~p~~~~~~~~~~~~----~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~  212 (285)
                      .+......+++.+......    +..|++.+..++....++.+.+|.+   .++.+....++|..++..+++.+..+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~G~l~~~  365 (402)
T PRK11902        292 GYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSAT---QYALLSALASVGRVYVGPTSGYLVEA  365 (402)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3221111123344444433    3445666666777777777777644   45556666677777665667666543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.10  E-value=2.5e-09  Score=100.48  Aligned_cols=124  Identities=21%  Similarity=0.223  Sum_probs=97.1

Q ss_pred             hhhhhhhhhccchh-------HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHH
Q psy4795          81 GLWGAYISCALGVS-------SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKI  153 (285)
Q Consensus        81 ~ft~~Y~~~~lg~~-------~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~  153 (285)
                      .+.|.|.++ +|.+       .+|.+..+..++..+++++.|+++||+|||+++..+.++..++.+.+..    .++++.
T Consensus        35 ~~l~~~~~~-~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~  109 (408)
T PRK09874         35 PFLPLYVEQ-LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGL----AQNIWQ  109 (408)
T ss_pred             hhHHHHHHH-hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHH----HhhHHH
Confidence            345556544 4542       2588899999999999999999999999999999988877776654433    245677


Q ss_pred             HHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         154 FFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       154 ~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      +++..++.|++.+. .+..++.+.+.+|+++ +.+.+.++...++|..++..+++.+.
T Consensus       110 ~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  166 (408)
T PRK09874        110 FLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLA  166 (408)
T ss_pred             HHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77778888988664 4666778888887665 89999999999999999998888764

>TIGR00895 2A0115 benzoate transport

Probab=99.09  E-value=4.9e-09  Score=97.15  Aligned_cols=120  Identities=15%  Similarity=0.106  Sum_probs=92.3

Q ss_pred             hhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q psy4795          86 YISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGV  163 (285)
Q Consensus        86 Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gi  163 (285)
                      |+.+..|.  .+.++......++..++.++.|+++||+|||+......+...... .+...   .++.+..++..++.|+
T Consensus       275 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~g~  350 (398)
T TIGR00895       275 KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAV-LVGST---LFSPTLLLLLGAIAGF  350 (398)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH-HHHHH---hhCHHHHHHHHHHHHH
Confidence            44445565  568889999999999999999999999999955544433333322 22221   2345666677888999


Q ss_pred             hhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         164 GDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       164 g~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                      +.+..++..++++.+.+|++. +.+.++++...++|..+|..+.+.+
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       351 FVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            999999999999999998766 9999999999999999999887754

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.08  E-value=1e-08  Score=96.99  Aligned_cols=122  Identities=16%  Similarity=0.089  Sum_probs=84.8

Q ss_pred             ccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHH--hCCCCC----ChHHHHHHHHHH
Q psy4795          90 ALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVV--WRPHPN----NPKIFFTISGLW  161 (285)
Q Consensus        90 ~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~--~~p~~~----~~~~~~~~~~l~  161 (285)
                      ..|.  ...++.+....++.+++++++|+++||+|||+.+..+.++..++.+.+..  ....++    ..+.......+.
T Consensus       313 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (481)
T TIGR00879       313 NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLF  392 (481)
T ss_pred             HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHH
Confidence            3455  45678888999999999999999999999999999887776666554431  111111    022222222233


Q ss_pred             HHh-hhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         162 GVG-DAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       162 Gig-~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      +.+ ...+.+....++.+.+|++. +.+.+..+...++|..++..+.+.+..
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~  444 (481)
T TIGR00879       393 IAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE  444 (481)
T ss_pred             HHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322 23344556667789998765 999999999999999999988776644

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.08  E-value=1.8e-09  Score=98.58  Aligned_cols=185  Identities=23%  Similarity=0.272  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHHH--HHhcccCC--------CC------cchH-----
Q psy4795          18 VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWI--LVVWRPHP--------NN------PKIF-----   76 (285)
Q Consensus        18 ~G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~~--fl~~e~~~--------~~------p~l~-----   76 (285)
                      .|.......++..++..+.|.+.++.|++..++...++.++..+.  ++..++++        ++      +...     
T Consensus       123 ~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (352)
T PF07690_consen  123 FGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSL  202 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHH
T ss_pred             cccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccccccccccccccccccccccc
Confidence            356667777888888888888888888875555545454444332  22221110        11      0000     


Q ss_pred             --------HHH------------hhhhhhhhhhccchh---HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHH
Q psy4795          77 --------FTI------------SGLWGAYISCALGVS---SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIV  133 (285)
Q Consensus        77 --------~~~------------~~ft~~Y~~~~lg~~---~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l  133 (285)
                              ...            ..+.|.|+.+.+|.+   +.+....+.+++..+++++.|+++||+|+++........
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  282 (352)
T PF07690_consen  203 FKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILL  282 (352)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence                    000            123467766666654   577889999999999999999999999998887777666


Q ss_pred             HHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHH
Q psy4795         134 HCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAY  203 (285)
Q Consensus       134 ~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~  203 (285)
                      ..+..+.+..... .++....+...++.|++.+..++..++++.+.+|+++ +.+.++++..+++|..+|+
T Consensus       283 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  283 LILGALGLLLLPF-SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHCCSHH-HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            5555544333222 3445666667888999999999999999999998766 9999999999999999874

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.07  E-value=2.9e-09  Score=98.59  Aligned_cols=127  Identities=17%  Similarity=0.129  Sum_probs=92.9

Q ss_pred             hhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHH-HHHHHHHHHHHHHHhCCCCCChHHHHHH
Q psy4795          81 GLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMAL-GFIVHCCLIWILVVWRPHPNNPKIFFTI  157 (285)
Q Consensus        81 ~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~-g~~l~~i~~~~l~~~~p~~~~~~~~~~~  157 (285)
                      .+.|.|+++.+|.  .++|+++..+.+...+.+++.|+++||+|||+.++. +.....++......    .++++.+++.
T Consensus        18 ~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~   93 (375)
T TIGR00899        18 PTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW----NRNYFLLLVL   93 (375)
T ss_pred             hHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh----cchHHHHHHH
Confidence            3456778888887  579999999999999999999999999999887654 44444333333222    3456666666


Q ss_pred             HHHHHHhhhhhhcccccceeeeccccc-hhH--hHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         158 SGLWGVGDAVWQTQVNGLYGTLFRRNK-EAA--FSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       158 ~~l~Gig~g~~~~~~~ali~~~fp~~~-~~a--fs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      .++.|.+.+...+...++..+..|+++ +.+  .+..+...++|.++|..+++.+..
T Consensus        94 ~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~  150 (375)
T TIGR00899        94 GVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL  150 (375)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH
Confidence            777787777777777777777776544 333  567888889999999999887753

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.07  E-value=1.2e-08  Score=98.19  Aligned_cols=115  Identities=14%  Similarity=0.043  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhh-hhcccc
Q psy4795          95 SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAV-WQTQVN  173 (285)
Q Consensus        95 ~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~-~~~~~~  173 (285)
                      ..++..+..++.+.++++++|+++||+|||++++.+.++..++.+.+....+++...........+.+.+.+. +.+..+
T Consensus       307 ~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (479)
T PRK10077        307 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCW  386 (479)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhH
Confidence            3456777888999999999999999999999999999887777655433221111112223334444544443 446678


Q ss_pred             cceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         174 GLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       174 ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                      +++.+.+|+++ +.+.++.+..+++|..++....+.+
T Consensus       387 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~  423 (479)
T PRK10077        387 VLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMM  423 (479)
T ss_pred             HHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            89999998754 9999999999999999886655543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.07  E-value=1.4e-09  Score=106.24  Aligned_cols=120  Identities=18%  Similarity=0.159  Sum_probs=101.6

Q ss_pred             hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhh
Q psy4795          88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGD  165 (285)
Q Consensus        88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~  165 (285)
                      .+.+|.  ++.+++...+.++..++.+++|+++||+|||+++..+.++..++.+....    .++.+.+++..++.|+|.
T Consensus        33 ~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~----a~~~~~li~~r~l~G~g~  108 (495)
T PRK14995         33 SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAF----SPTASWLIATRALLAIGA  108 (495)
T ss_pred             HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Confidence            345665  57889999999999999999999999999999999999888877766554    356788888899999999


Q ss_pred             hhhhcccccceeeec-cc-cchhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         166 AVWQTQVNGLYGTLF-RR-NKEAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       166 g~~~~~~~ali~~~f-p~-~~~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      +...+...+.+.+.+ |+ +++.+++++....++|.++|..+++.+..
T Consensus       109 ~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~  156 (495)
T PRK14995        109 AMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE  156 (495)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999888888887776 44 44899999999999999999999988754

>KOG2615|consensus

Probab=99.06  E-value=2.8e-10  Score=106.50  Aligned_cols=113  Identities=17%  Similarity=0.218  Sum_probs=92.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795          94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN  173 (285)
Q Consensus        94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~  173 (285)
                      ...|++...+++.+.+++++.|.+|||+|||+++..+++..++.......    +.+...+.+..++.|+..|.. +.+-
T Consensus        68 ~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~----S~~F~afv~aR~l~Gi~kgnl-~v~r  142 (451)
T KOG2615|consen   68 FYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL----SRNFAAFVLARFLGGIFKGNL-SVIR  142 (451)
T ss_pred             hhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhccCch-HHHH
Confidence            35789999999999999999999999999999999998877764433222    345534444488899988866 4578


Q ss_pred             cceeeecccc-chhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         174 GLYGTLFRRN-KEAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       174 ali~~~fp~~-~~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      ++++|.++++ ++.++|......++|..+|+.+++++..
T Consensus       143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            9999999665 4999999999999999999999999877

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.06  E-value=2.4e-09  Score=100.76  Aligned_cols=119  Identities=19%  Similarity=0.275  Sum_probs=97.2

Q ss_pred             hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhh
Q psy4795          89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDA  166 (285)
Q Consensus        89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g  166 (285)
                      +.+|.  .+.++++..+.++..+++++.|+++||+|||+++..+..+..++.+....    .++.+.+++..++.|++.+
T Consensus        36 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~  111 (394)
T PRK11652         36 RDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALF----AHSLTVLIAASAIQGLGTG  111 (394)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHhhhh
Confidence            44555  57889999999999999999999999999999999998877776655444    2456777888889999988


Q ss_pred             hhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         167 VWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       167 ~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      ...+..+.+..+.+|+++ +.+.+.++....+|..++..+++.+..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~  157 (394)
T PRK11652        112 VGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT  157 (394)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            877777778888887655 888888888888888888888777643

>KOG3097|consensus

Probab=99.06  E-value=1.4e-10  Score=106.34  Aligned_cols=81  Identities=53%  Similarity=1.017  Sum_probs=76.6

Q ss_pred             CcccccceeeecccchHHHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHHHHHhcccCCCCcchHHHHhh
Q psy4795           2 GDFTQAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISG   81 (285)
Q Consensus         2 ~~f~~~~~~c~~g~d~~G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~~fl~~e~~~~~p~l~~~~~~   81 (285)
                      +||||+||.|++|++.+|++|.++|+.+++.|.+.|.|.+..||.++...|+++|..++.....|||.|.++.++|....
T Consensus       296 ~~fTk~~V~c~~Gv~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~l~li~~~~~w~~~~~~~~i~y~~aa  375 (390)
T KOG3097|consen  296 ADFTKAYVACALGVSRIGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHLLLITILFFWAPNPQDSWIFYVAAA  375 (390)
T ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHhcccCCCCceEEEeehh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999888887754


Q ss_pred             h
Q psy4795          82 L   82 (285)
Q Consensus        82 f   82 (285)
                      .
T Consensus       376 l  376 (390)
T KOG3097|consen  376 L  376 (390)
T ss_pred             h
Confidence            4

>PRK03699 putative transporter; Provisional

Probab=99.05  E-value=2.4e-09  Score=101.12  Aligned_cols=117  Identities=15%  Similarity=0.074  Sum_probs=96.0

Q ss_pred             hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhh
Q psy4795          89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDA  166 (285)
Q Consensus        89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g  166 (285)
                      +.+|+  ++.|++...+.++..+++++.|+++||+|||+++..+.++..++.+...+    .++++.+++..++.|++.|
T Consensus        35 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~----~~~~~~~~~~~~l~G~~~g  110 (394)
T PRK03699         35 EYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMF----SHSLALFSIAMFVLGVVSG  110 (394)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----cchHHHHHHHHHHHHHhhH
Confidence            34565  57889999999999999999999999999999999988877776655444    2456777888899999999


Q ss_pred             hhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         167 VWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       167 ~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                      ...+..++.+.+.+|+++ +.+.+..+...++|..++....+.+
T Consensus       111 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  154 (394)
T PRK03699        111 ITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL  154 (394)
T ss_pred             hhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988888999999998765 8888888888888887777766554

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.05  E-value=6.3e-10  Score=107.70  Aligned_cols=122  Identities=10%  Similarity=0.055  Sum_probs=99.6

Q ss_pred             hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHH-hCCCCCChHHHHHHHHHHHHh
Q psy4795          88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVV-WRPHPNNPKIFFTISGLWGVG  164 (285)
Q Consensus        88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~-~~p~~~~~~~~~~~~~l~Gig  164 (285)
                      .+.+|.  .+.|++...+.++..+++++.|+++||+|||+++..+.++..+..+.... .....++.+.+++..++.|++
T Consensus        56 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~  135 (467)
T PRK09556         56 ISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFF  135 (467)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence            345565  67999999999999999999999999999999998888776665543322 112235678888889999999


Q ss_pred             hhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         165 DAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       165 ~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                      .+...+..++++.+.+|+++ +.+.+++....++|.+++..+...+
T Consensus       136 ~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~  181 (467)
T PRK09556        136 QSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWG  181 (467)
T ss_pred             HhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHH
Confidence            99999999999999998765 9999999999999999998876544

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.04  E-value=7.9e-10  Score=106.59  Aligned_cols=120  Identities=9%  Similarity=0.028  Sum_probs=100.1

Q ss_pred             cch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhh
Q psy4795          91 LGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVW  168 (285)
Q Consensus        91 lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~  168 (285)
                      ++.  .+.|+++..+.++..+++++.|+++||+|||+++..+.++..+..+......  .++.+..++..++.|++.+..
T Consensus        71 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~~~G~~~~~~  148 (465)
T TIGR00894        71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA--GGGIALVVFCRVIQGLAQGSV  148 (465)
T ss_pred             CCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH--HcCchHHHHHHHHHHHhcccc
Confidence            455  5788999999999999999999999999999999998887666654432211  234566778899999999999


Q ss_pred             hcccccceeeecccc-chhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795         169 QTQVNGLYGTLFRRN-KEAAFSNFRLWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       169 ~~~~~ali~~~fp~~-~~~afs~~~l~~~lG~~ig~~~s~~l~~~  212 (285)
                      .+....++.+.+|++ ++.+.+.+....++|..++..+++.+..+
T Consensus       149 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~  193 (465)
T TIGR00894       149 SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCES  193 (465)
T ss_pred             hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999865 49999999999999999999998887543

>KOG0255|consensus

Probab=99.04  E-value=8.9e-09  Score=100.98  Aligned_cols=120  Identities=18%  Similarity=0.128  Sum_probs=102.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795          94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN  173 (285)
Q Consensus        94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~  173 (285)
                      ....+...++-+|..+|++++|.++||+|||++++.+.++..++-+...+    .++++.+.+..++.|++.+...+...
T Consensus       118 ~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~----a~~~~~~~~~Rfl~G~~~~~~~~~~~  193 (521)
T KOG0255|consen  118 TLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF----APNYWMFLIFRFLSGFFGSGPLTVGF  193 (521)
T ss_pred             hHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHhhccchhHHhH
Confidence            45778899999999999999999999999999999999998888766655    56889999999999999999999999


Q ss_pred             cceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy4795         174 GLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVM  218 (285)
Q Consensus       174 ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~~l~il  218 (285)
                      .+++|.++++. +.+.+. ......|..++....+++..+|+..-.
T Consensus       194 ~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~  238 (521)
T KOG0255|consen  194 GLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFW  238 (521)
T ss_pred             hhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            99999996554 777778 777777777788888888777774433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.04  E-value=3.8e-09  Score=104.41  Aligned_cols=118  Identities=19%  Similarity=0.191  Sum_probs=100.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHH-HHhCCCCCChHHHHHHHHHHHHhhhhhhccc
Q psy4795          94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWIL-VVWRPHPNNPKIFFTISGLWGVGDAVWQTQV  172 (285)
Q Consensus        94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l-~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~  172 (285)
                      ..+|++..+..+-.++.++++|.++||++||++++.+.++.++....+ .+...+..++|.+++..++.|++.+..+|..
T Consensus        45 ~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~  124 (524)
T PF05977_consen   45 LMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAW  124 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            467888888888999999999999999999999999988776544332 2222224567888999999999999999999


Q ss_pred             ccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         173 NGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       173 ~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      ++++.+++|+++ ..|.++++...|+...+|+++++.+-.
T Consensus       125 ~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva  164 (524)
T PF05977_consen  125 QAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVA  164 (524)
T ss_pred             HHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            999999999988 999999999999999999999988644

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.03  E-value=1.6e-09  Score=115.13  Aligned_cols=117  Identities=15%  Similarity=0.116  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhccccc
Q psy4795          95 SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNG  174 (285)
Q Consensus        95 ~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~a  174 (285)
                      ..+++..++.++..++++++|+++||+|||++++.+.++.++..+....... .++++.+++..++.|++.+.+.+..++
T Consensus        48 ~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~  126 (1146)
T PRK08633         48 LTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYY-LGWFWLAFAVTFLLGAQSAIYSPAKYG  126 (1146)
T ss_pred             HHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHHHHHhhchHHHh
Confidence            4678888999999999999999999999999999888765554443222111 244788888899999999999999999


Q ss_pred             ceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795         175 LYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       175 li~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~  212 (285)
                      ++.+.+|+++ +.+++.+....++|..+|..+++.+...
T Consensus       127 ~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        127 IIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             hhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999998766 9999999999999999999999887654

>PRK09848 glucuronide transporter; Provisional

Probab=99.03  E-value=2.3e-08  Score=96.21  Aligned_cols=124  Identities=14%  Similarity=0.133  Sum_probs=95.8

Q ss_pred             hhhhhhccchh-HHH-HHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q psy4795          84 GAYISCALGVS-SVG-YVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLW  161 (285)
Q Consensus        84 ~~Y~~~~lg~~-~~G-~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~  161 (285)
                      |.|.+..+|.+ ..+ +.+....++.++++++.++++||+|+|+++.+|.++..++.+.+.+ .+ +++.+..++..++.
T Consensus       252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~-~~-~~~~~~~~~~~~l~  329 (448)
T PRK09848        252 LFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFW-VS-VWSLPVALVALAIA  329 (448)
T ss_pred             eeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-cC-chhHHHHHHHHHHH
Confidence            56677777773 334 4445556778889999999999999999999998877776655443 33 34556666667788


Q ss_pred             HHhhhhhhcccccceeeecccc-------c-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         162 GVGDAVWQTQVNGLYGTLFRRN-------K-EAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       162 Gig~g~~~~~~~ali~~~fp~~-------~-~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                      |+|.+..++..+++..+..|.+       + +..++.+++.+.+|.++|.++.+.+
T Consensus       330 g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~  385 (448)
T PRK09848        330 SIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI  385 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998887643       3 7788999999999999998876654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.03  E-value=5e-08  Score=103.83  Aligned_cols=124  Identities=19%  Similarity=0.256  Sum_probs=101.5

Q ss_pred             hhhhhhhccch--h-HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q psy4795          83 WGAYISCALGV--S-SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISG  159 (285)
Q Consensus        83 t~~Y~~~~lg~--~-~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~  159 (285)
                      .|.|++..+|.  . ..|++....+++.++++++.|+++||+++++++.++.++.+++.+.+.+    .++.+..++..+
T Consensus       255 ~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  330 (1146)
T PRK08633        255 FPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPT----APSLASVLVLFF  330 (1146)
T ss_pred             hHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHH----hhhHHHHHHHHH
Confidence            36777777776  4 6789999999999999999999999999999888887766665544433    225566677788


Q ss_pred             HHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         160 LWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       160 l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      ++|++.++..++.++++.+..|++. +.+++++++++++|+.++..++..+.
T Consensus       331 ~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~  382 (1146)
T PRK08633        331 LFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS  382 (1146)
T ss_pred             HHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998765 99999999999999988877776654

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.02  E-value=2.7e-09  Score=100.89  Aligned_cols=118  Identities=14%  Similarity=0.102  Sum_probs=96.5

Q ss_pred             hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhh
Q psy4795          89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDA  166 (285)
Q Consensus        89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g  166 (285)
                      +.+|.  .+.++....+.++..+++++.|+++||+|||+++..+..+..++.+....    .++.+.+++..++.|++.+
T Consensus        41 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~~~l~G~~~~  116 (406)
T PRK15402         41 EDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILL----AQSIEQFTLLRFLQGIGLC  116 (406)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHhHhh
Confidence            34555  56888899999999999999999999999999999998877776655444    2356777788899999999


Q ss_pred             hhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         167 VWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       167 ~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      ...+..++.+.+.+|+++ ..+.+......++|..+|..+++.+.
T Consensus       117 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  161 (406)
T PRK15402        117 FIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI  161 (406)
T ss_pred             hHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888899999998876 67788877777888888888877653

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.02  E-value=5.9e-09  Score=101.83  Aligned_cols=124  Identities=16%  Similarity=0.260  Sum_probs=90.7

Q ss_pred             hhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhc----ccCChhHHHHH-HHHHHHHHHHHHHhCCCC--------
Q psy4795          84 GAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMK----FIGRSPLMALG-FIVHCCLIWILVVWRPHP--------  148 (285)
Q Consensus        84 ~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsD----riGrk~~i~~g-~~l~~i~~~~l~~~~p~~--------  148 (285)
                      +.|+ +.+|.  ..++++..+.++...+.+|+.|+++|    |+|||+.++++ .....+++.+ +.+.++.        
T Consensus        28 ~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~l-l~~~~~~~~~~~~~~  105 (477)
T TIGR01301        28 TPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVIL-IGFAADIGHLFGDNL  105 (477)
T ss_pred             HHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHH-HHhCchhhhhccccc
Confidence            3344 34666  57889999999999999999999999    59999998875 4444443333 3232210        


Q ss_pred             ---CCh---HHHHHHHHHHHHhhhhhhcccccceeeeccccc---hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         149 ---NNP---KIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK---EAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       149 ---~~~---~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~---~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                         +..   +...+...++.++....+++..++++|++|+++   +.+++..+.+.++|..+|+..+++.
T Consensus       106 ~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~  175 (477)
T TIGR01301       106 DKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYS  175 (477)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               011   222333445567888899999999999998753   5799999999999999999998765

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.02  E-value=5.2e-09  Score=99.46  Aligned_cols=128  Identities=16%  Similarity=0.212  Sum_probs=96.4

Q ss_pred             Hhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcc----cCC-hhHHHHHHHHHHHHHHHHHHhCCCCC--
Q psy4795          79 ISGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKF----IGR-SPLMALGFIVHCCLIWILVVWRPHPN--  149 (285)
Q Consensus        79 ~~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDr----iGr-k~~i~~g~~l~~i~~~~l~~~~p~~~--  149 (285)
                      ...|.+.|+++.+|+  ..+|.++....+..++..|+.|+++||    +|| ||.++.+.....++.+.++ +.|+.+  
T Consensus        18 ~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~-~~~~~~~~   96 (437)
T TIGR00792        18 VSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF-TTPDFSAT   96 (437)
T ss_pred             HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH-hCCCCCcc
Confidence            355677788888887  579999999999999999999999997    677 4456677777766655544 344222  


Q ss_pred             -ChHHHHHHHHHHHHhhhhhhcccccceeeecc--ccchhHhHHHHHHHHHHHHHHHHHhh
Q psy4795         150 -NPKIFFTISGLWGVGDAVWQTQVNGLYGTLFR--RNKEAAFSNFRLWESVGFVIAYAYST  207 (285)
Q Consensus       150 -~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp--~~~~~afs~~~l~~~lG~~ig~~~s~  207 (285)
                       ..+..++...+++++.++.+.+.+++..++.+  ++|+...+..+.+.++|..++..+.+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~  157 (437)
T TIGR00792        97 GKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVL  157 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             13445556678899999999999999999874  34577888888888898777655543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PTZ00207 hypothetical protein; Provisional

Probab=99.01  E-value=1.4e-08  Score=101.51  Aligned_cols=133  Identities=13%  Similarity=0.230  Sum_probs=98.8

Q ss_pred             hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCC--CCChHHHH
Q psy4795          80 SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPH--PNNPKIFF  155 (285)
Q Consensus        80 ~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~--~~~~~~~~  155 (285)
                      +.+.+. +++.+|+  .+.+++... +....++++++|+++||+|||+++.++.++..++.++..+....  .++++.++
T Consensus        47 sv~s~~-L~~~lgls~~~l~~i~sv-g~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~  124 (591)
T PTZ00207         47 NLISGA-MQARYNLTQRDLSTITTV-GIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLS  124 (591)
T ss_pred             HHHHHH-HHHHhCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHH
Confidence            344442 3556676  356655544 33445567778999999999999999999988888765543111  24678888


Q ss_pred             HHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHH-HHHHhhhhhHHHH
Q psy4795         156 TISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVI-AYAYSTHLCARMK  214 (285)
Q Consensus       156 ~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~i-g~~~s~~l~~~~~  214 (285)
                      +..++.|+|.+..++.....+.+.||++|+.+.++.+...++|.++ +..+..++..++.
T Consensus       125 l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~  184 (591)
T PTZ00207        125 VYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTS  184 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            8888999999999998888999999999999999999999999985 4444555433343

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.01  E-value=9.9e-09  Score=94.81  Aligned_cols=104  Identities=13%  Similarity=0.104  Sum_probs=81.6

Q ss_pred             HHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCC-----hHHHHHHHHHHHHhhhhhhcccccceeee
Q psy4795         105 VVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNN-----PKIFFTISGLWGVGDAVWQTQVNGLYGTL  179 (285)
Q Consensus       105 v~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~-----~~~~~~~~~l~Gig~g~~~~~~~ali~~~  179 (285)
                      +...+++++.|+++||+|||+++..+.++..++.+...+. ++.+.     .+.+++..++.|++.+...+..++++.+.
T Consensus        46 ~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~  124 (394)
T TIGR00883        46 LARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLL-PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEY  124 (394)
T ss_pred             HHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhC-CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhc
Confidence            3445789999999999999999999998887776555442 21111     12456678899999999999999999999


Q ss_pred             ccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         180 FRRNK-EAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       180 fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                      +|+++ +...+......++|..++...+..+
T Consensus       125 ~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~  155 (394)
T TIGR00883       125 APPGKRGFYGSFQQVGAPVGLLLAALTVLLL  155 (394)
T ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            97655 8899999999999999888776554

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.01  E-value=4.5e-09  Score=99.29  Aligned_cols=118  Identities=12%  Similarity=0.123  Sum_probs=91.0

Q ss_pred             hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhh
Q psy4795          88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGD  165 (285)
Q Consensus        88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~  165 (285)
                      ++.+|+  .+.|++...+.++..++++..|+++||+|||+++..+......+.. ... .  .++++.+.+..++.|++.
T Consensus        18 ~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~-~--~~~~~~l~~~R~l~G~g~   93 (368)
T TIGR00903        18 AEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLL-D--PFNYEWLLACQLLAALGQ   93 (368)
T ss_pred             HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHH-H--hccHHHHHHHHHHHHhHh
Confidence            345565  5789999999999999999999999999999876655444333322 222 1  236788888899999999


Q ss_pred             hhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         166 AVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       166 g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      +.. .+....+.+.+|+++ +.+.++.....++|..++...++.+.
T Consensus        94 ~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~  138 (368)
T TIGR00903        94 PFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIY  138 (368)
T ss_pred             HHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            865 444555578887655 99999999999999999999988874

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.00  E-value=2.1e-08  Score=98.25  Aligned_cols=113  Identities=9%  Similarity=0.057  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhcccCChhH-------HHHHHHHHHHHHHHH-----HHhCCC-CCChHHHHHHHHHHHH
Q psy4795          97 GYVMICFGVVNAICSLLFGTLMKFIGRSPL-------MALGFIVHCCLIWIL-----VVWRPH-PNNPKIFFTISGLWGV  163 (285)
Q Consensus        97 G~v~~~~gv~~~i~s~l~G~LsDriGrk~~-------i~~g~~l~~i~~~~l-----~~~~p~-~~~~~~~~~~~~l~Gi  163 (285)
                      .......++..++.+|+.|++.||.+||+.       +.+|.++..+++..+     .....+ ..++++.....++.|+
T Consensus       312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~  391 (489)
T PRK10207        312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL  391 (489)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            455666778888999999999999999973       777877777665432     121111 2346667778899999


Q ss_pred             hhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         164 GDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       164 g~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                      |.++..++.++++.+..|++. +.+.+++++.+++|..+|..++...
T Consensus       392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999887 9999999999999999999888543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.98  E-value=1.5e-08  Score=98.72  Aligned_cols=119  Identities=14%  Similarity=0.142  Sum_probs=92.4

Q ss_pred             hhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q psy4795          86 YISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGV  163 (285)
Q Consensus        86 Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gi  163 (285)
                      ++++.+|+  .+.|++...+.++..+++++.|+++||+|||+++..+.++..++.+...+    .++++.+++..++.|+
T Consensus        61 ~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~----~~s~~~l~~~r~l~G~  136 (476)
T PLN00028         61 IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSL----VSSATGFIAVRFFIGF  136 (476)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHH
Confidence            34556676  57888888899999999999999999999999999888777766654433    2355667777888898


Q ss_pred             hhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         164 GDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       164 g~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                      +.+.+. +....+.+.+|+++ +.+.++.+.+.++|..++..+.+.+
T Consensus       137 ~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i  182 (476)
T PLN00028        137 SLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLV  182 (476)
T ss_pred             HHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887654 34556788898754 9999999999999998887666543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.97  E-value=1.2e-08  Score=97.70  Aligned_cols=110  Identities=15%  Similarity=0.093  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCC-----ChHHHHHHHHHHHHhhhhhhcccc
Q psy4795          99 VMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPN-----NPKIFFTISGLWGVGDAVWQTQVN  173 (285)
Q Consensus        99 v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~-----~~~~~~~~~~l~Gig~g~~~~~~~  173 (285)
                      +.....++..++++++|+++||+|||+++..+.++..++.+...+. |+-.     ++..+.+..++.|++.|...+...
T Consensus        68 ~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~  146 (432)
T PRK10406         68 VFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACL-PGYETIGTWAPALLLLARLFQGLSVGGEYGTSA  146 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHH
Confidence            3344445666999999999999999999999998887777654442 2111     134567788999999999999999


Q ss_pred             cceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         174 GLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       174 ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                      +++.|.+|+++ +.+.+..+...+.|..++......+
T Consensus       147 ~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~  183 (432)
T PRK10406        147 TYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVL  183 (432)
T ss_pred             HHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998665 8888888888999988887665443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.97  E-value=1.4e-08  Score=99.07  Aligned_cols=104  Identities=14%  Similarity=0.114  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChH--------HHHHHHHHHHHhhhhhhccc
Q psy4795         101 ICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPK--------IFFTISGLWGVGDAVWQTQV  172 (285)
Q Consensus       101 ~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~--------~~~~~~~l~Gig~g~~~~~~  172 (285)
                      ...-++..++++++|+++||+|||+++.++.++..++.+...+ .|   ++.        ++.+..++.|++.|...+..
T Consensus        64 ~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~-~~---~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~  139 (490)
T PRK10642         64 SVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGL-IP---SYATIGIWAPILLLLCKMAQGFSVGGEYTGA  139 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHh-cc---cHHHHHHHHHHHHHHHHHHHHhHhHhhHHHH
Confidence            4556788999999999999999999999999988887766544 22   332        36777899999999999999


Q ss_pred             ccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795         173 NGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTH  208 (285)
Q Consensus       173 ~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~  208 (285)
                      .+++.|.+|+++ +.+.+......++|..+|..+...
T Consensus       140 ~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~  176 (490)
T PRK10642        140 SIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVL  176 (490)
T ss_pred             HHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998665 888888888888888888766543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.97  E-value=9.2e-09  Score=109.81  Aligned_cols=115  Identities=13%  Similarity=0.065  Sum_probs=92.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHH--HHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcc
Q psy4795          94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHC--CLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQ  171 (285)
Q Consensus        94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~--i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~  171 (285)
                      ...++.+.++.+..++.++++|+++||+|||+++........  .........   .++++.+++..++.|++.+.+.+.
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~---~~s~~~l~~~~~l~gi~~a~~~p~  128 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH---LNSVPLLFAALFLMGIHSALFGPI  128 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHhhchH
Confidence            356788889999999999999999999999998643222111  111112222   246788899999999999999999


Q ss_pred             cccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         172 VNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       172 ~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      .++++.+.+|+++ +.+.|+.+...++|.++|..+++.+..
T Consensus       129 ~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~  169 (1140)
T PRK06814        129 KYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI  169 (1140)
T ss_pred             HHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999998876 999999999999999999999998754

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.96  E-value=5.2e-08  Score=93.52  Aligned_cols=148  Identities=14%  Similarity=-0.015  Sum_probs=87.4

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHH--HHHHHhCCCCCChHHHHHH
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLI--WILVVWRPHPNNPKIFFTI  157 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~--~~l~~~~p~~~~~~~~~~~  157 (285)
                      |.|.|+++..|.  ...++.+..+++++.++.+++|+++||+++++....+........  ...+...+ ..+.+.....
T Consensus       273 ~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  351 (438)
T TIGR00712       273 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNP-AGNPLVDMIC  351 (438)
T ss_pred             hHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHH
Confidence            457888877776  467888899999999999999999999965443333332222211  11222222 2233433333


Q ss_pred             HHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHH-HHHHHHHhhhhhHH----HHHHHHHHHHHHHHHHHH
Q psy4795         158 SGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVG-FVIAYAYSTHLCAR----MKLYVMGVVLVTGFCGYV  230 (285)
Q Consensus       158 ~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG-~~ig~~~s~~l~~~----~~l~il~~~lv~~~v~~~  230 (285)
                      .+.+|++.............+.+|++. +++.++++...++| .++|..+.+.+..+    .-.+++.+..+++.+...
T Consensus       352 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  430 (438)
T TIGR00712       352 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  430 (438)
T ss_pred             HHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence            344444322111222345668888755 99999999988886 56787777666542    334444444444444433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.96  E-value=3.3e-09  Score=102.66  Aligned_cols=118  Identities=14%  Similarity=0.056  Sum_probs=92.9

Q ss_pred             hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHH-HHHHHHhh
Q psy4795          89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTI-SGLWGVGD  165 (285)
Q Consensus        89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~-~~l~Gig~  165 (285)
                      +.+|.  ++.+++...+.++..+++++.|+++||+|||++++.+.++..+..+...+    .++.+..++. .++.|++.
T Consensus        47 ~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~l~G~~~  122 (455)
T TIGR00892        47 QIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASF----SSNVIELYLTAGFITGLGL  122 (455)
T ss_pred             HHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHhcc
Confidence            45665  57888888888899999999999999999999999988777766655433    2344554433 46779988


Q ss_pred             hhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         166 AVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       166 g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      +...++..+++.+.+|++++.+.++.+...++|.+++..+.+.+.
T Consensus       123 ~~~~~~~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~  167 (455)
T TIGR00892       123 AFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLF  167 (455)
T ss_pred             hhhhhHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            876667778888889887899999999999999998888776653

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.96  E-value=2.4e-07  Score=88.49  Aligned_cols=191  Identities=12%  Similarity=0.020  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHH-HHHH-hcccCC--CCc------chHHH--H-------
Q psy4795          19 GYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLI-WILV-VWRPHP--NNP------KIFFT--I-------   79 (285)
Q Consensus        19 G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l-~~fl-~~e~~~--~~p------~l~~~--~-------   79 (285)
                      |.......++..++.+..+.+.++.|++..++.-.++.++.+ ..+. ..|+++  +++      .-.+.  .       
T Consensus       143 ~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  222 (413)
T PRK15403        143 AIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVPFSAKSVLRDFRNVFRNRLFLT  222 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCChHHHHHHHHHHHcCHHHHH
Confidence            344455556666666666777778898755554444444332 2222 222111  111      00000  0       


Q ss_pred             ---------------hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHH
Q psy4795          80 ---------------SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILV  142 (285)
Q Consensus        80 ---------------~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~  142 (285)
                                     ..+.|.|+++..|.  .+.|+.......+..+++.+.+++.+|.++++....+..+..++...+.
T Consensus       223 ~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~  302 (413)
T PRK15403        223 GAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLI  302 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHH
Confidence                           01247888887776  4678888888888888888888876554444443333222222222211


Q ss_pred             H---hCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         143 V---WRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       143 ~---~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      .   ..+  ++++..++..++.++|.+...+..++......+.+++++.+++++.+..++..+....+++..
T Consensus       303 ~~~~~~~--~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~  372 (413)
T PRK15403        303 VGNLLWP--HVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWF  372 (413)
T ss_pred             HHHHHcc--ccHHHHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1   122  333344566777888888888777753322223345899999999999999999888887644

>PRK09669 putative symporter YagG; Provisional

Probab=98.95  E-value=1.4e-07  Score=90.75  Aligned_cols=124  Identities=14%  Similarity=0.141  Sum_probs=91.4

Q ss_pred             hhhhhhccchh-HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q psy4795          84 GAYISCALGVS-SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWG  162 (285)
Q Consensus        84 ~~Y~~~~lg~~-~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~G  162 (285)
                      +.|.+..++.. ..+..+....+..+++.++.++++||+|+|+.+..+.+...+....+++. + +++.+.+++..+++|
T Consensus       253 ~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~i~g  330 (444)
T PRK09669        253 LYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI-P-PSNVWLIFALNILFN  330 (444)
T ss_pred             heeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-C-cchHHHHHHHHHHHH
Confidence            33344445543 34456666667888889999999999999999988876655443333332 2 345667777788999


Q ss_pred             Hhhhhhhcccccceeeeccc-------cc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         163 VGDAVWQTQVNGLYGTLFRR-------NK-EAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       163 ig~g~~~~~~~ali~~~fp~-------~~-~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                      ++.+..++..+++++|..+.       ++ +..+|.+.+.+++|.++|..+++.+
T Consensus       331 ~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l  385 (444)
T PRK09669        331 FIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI  385 (444)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998751       22 5678899999999999998887664

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.95  E-value=7.3e-09  Score=98.60  Aligned_cols=131  Identities=12%  Similarity=0.162  Sum_probs=82.4

Q ss_pred             hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHh--CCC-CCChH-H
Q psy4795          80 SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW--RPH-PNNPK-I  153 (285)
Q Consensus        80 ~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~--~p~-~~~~~-~  153 (285)
                      ..+.|.|+++.+|.  .++|++...+.++..+++++.|+++||+|||+++..+.....+.....+..  .+. ..+.. .
T Consensus        30 ~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (420)
T PRK09528         30 FSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLG  109 (420)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888887777  579999999999999999999999999999999887665544333221110  000 00001 1


Q ss_pred             HHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         154 FFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       154 ~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      .++..+..|.+.....+..+... +.++++++..++..+.+.++|.+++..+++.+..
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~  166 (420)
T PRK09528        110 AIVGGIYLGFGFLAGAGAIEAYI-ERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN  166 (420)
T ss_pred             HHHHHHHhhhhhccchhhhhhHH-HHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh
Confidence            11112222322222222222222 2233444667888999999999999999888744

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.95  E-value=3.3e-08  Score=93.86  Aligned_cols=157  Identities=18%  Similarity=0.129  Sum_probs=106.3

Q ss_pred             hhhhhhhhccchh--HHHHHHHHHHHHHHHHHhhhhhhhccc--CChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHH
Q psy4795          82 LWGAYISCALGVS--SVGYVMICFGVVNAICSLLFGTLMKFI--GRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTI  157 (285)
Q Consensus        82 ft~~Y~~~~lg~~--~~G~v~~~~gv~~~i~s~l~G~LsDri--Grk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~  157 (285)
                      +.|.|+++..|.+  .+++....+-++...|+++.|++|||+  |||.++.+...+.....+..++..| +.++++..++
T Consensus       274 W~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~-~~~~~l~~~~  352 (448)
T COG2271         274 WGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAP-NGSYLLDAIL  352 (448)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCC-CccHHHHHHH
Confidence            3499999998884  677999999999999999999999983  6776665544433333334444455 3466777777


Q ss_pred             HHHHHHhhhhhhcc--cccceeeeccccc-hhHhHHHHHHHHH-HHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHH
Q psy4795         158 SGLWGVGDAVWQTQ--VNGLYGTLFRRNK-EAAFSNFRLWESV-GFVIAYAYSTHLCA----RMKLYVMGVVLVTGFCGY  229 (285)
Q Consensus       158 ~~l~Gig~g~~~~~--~~ali~~~fp~~~-~~afs~~~l~~~l-G~~ig~~~s~~l~~----~~~l~il~~~lv~~~v~~  229 (285)
                      .+..|+.  ++.||  +.....|..|++- ++|-+...++..+ |.+.+-..-+.+..    +.-.+++.+..+++.+.+
T Consensus       353 l~~iGf~--IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll  430 (448)
T COG2271         353 LFIIGFL--IYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLL  430 (448)
T ss_pred             HHHHHHH--HhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHH
Confidence            7776654  34444  3445567788887 8888888888888 77766555444422    233566666667777777


Q ss_pred             HHHHHHHHHhHH
Q psy4795         230 VIVEVRHMMKAR  241 (285)
Q Consensus       230 ~~~e~~~~~~~~  241 (285)
                      ..+-+.++++.|
T Consensus       431 ~~~~~~~~~~~~  442 (448)
T COG2271         431 LPVWNAEERKIR  442 (448)
T ss_pred             HHHHhhcchhhh
Confidence            666655544443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.93  E-value=4.3e-08  Score=94.54  Aligned_cols=127  Identities=17%  Similarity=-0.002  Sum_probs=80.0

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHH--------HHHHHHHHHHHHHHHHhCCCCCCh
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLM--------ALGFIVHCCLIWILVVWRPHPNNP  151 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i--------~~g~~l~~i~~~~l~~~~p~~~~~  151 (285)
                      |.|.|+++.+|.  .+.|+......++..++++++|+++||+++|+..        ..+......+...+..... .++.
T Consensus       283 ~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  361 (465)
T TIGR00894       283 YLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYL-SAAF  361 (465)
T ss_pred             HHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHc-CCch
Confidence            458888887777  5788888899999999999999999997654321        1111111111111111111 2233


Q ss_pred             HHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         152 KIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       152 ~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                      +...+...+.+.+.+...+.......+..|+..+.+.++.++..++|..++..+.+.+
T Consensus       362 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~  419 (465)
T TIGR00894       362 YLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNI  419 (465)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence            4444444444555444444444555566777669999999999999998888776664

>KOG0254|consensus

Probab=98.92  E-value=1.5e-08  Score=99.62  Aligned_cols=113  Identities=16%  Similarity=0.171  Sum_probs=102.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795          94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN  173 (285)
Q Consensus        94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~  173 (285)
                      ++.+++.....++..+++++.|+++|++|||+.++++.++..++.+....    .++.+.+.+..++.|+|.|..+...+
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~----a~~~~~l~~GR~l~G~g~G~~~~~~p  164 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIAL----APSWYQLIVGRILTGLGVGGASVLAP  164 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHhccchhhhhhcch
Confidence            45689999999999999999999999999999999999999998877766    34788999999999999999999999


Q ss_pred             cceeeecccc-chhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         174 GLYGTLFRRN-KEAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       174 ali~~~fp~~-~~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      .+++|.-|++ |+...+.+++..++|..+++..+....
T Consensus       165 iy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~  202 (513)
T KOG0254|consen  165 VYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTS  202 (513)
T ss_pred             hhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            9999999885 599999999999999999988887764

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.91  E-value=2.8e-08  Score=96.64  Aligned_cols=118  Identities=12%  Similarity=0.076  Sum_probs=95.5

Q ss_pred             ccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHh-CCCCCChHHHHHHHHHHHHhhh
Q psy4795          90 ALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW-RPHPNNPKIFFTISGLWGVGDA  166 (285)
Q Consensus        90 ~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~-~p~~~~~~~~~~~~~l~Gig~g  166 (285)
                      .+|+  ++.++...+..++..++.+..|++.||+|.|+++..+.++..+..+.+.+. ....++++.+++..+++|++ +
T Consensus        64 ~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g  142 (462)
T PRK15034         64 GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-G  142 (462)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-H
Confidence            4666  578899999999999998889999999999999999988877666554442 11135788889999999998 5


Q ss_pred             hhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795         167 VWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTH  208 (285)
Q Consensus       167 ~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~  208 (285)
                      ...+.....+...||+++ +.+.+++.-+.|+|..++..+.+.
T Consensus       143 ~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~  185 (462)
T PRK15034        143 ANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPL  185 (462)
T ss_pred             HhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            566778888999999875 999999988888888877666654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.89  E-value=1.2e-08  Score=96.76  Aligned_cols=117  Identities=15%  Similarity=0.175  Sum_probs=102.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhc
Q psy4795          91 LGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQT  170 (285)
Q Consensus        91 lg~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~  170 (285)
                      +..++.|++..++.+...++-.+.|.++||.+.|..+.+|+++.++.-+++-+    .++.+++.+..++.|...|.--|
T Consensus        61 lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gf----s~s~~~~~~l~~lng~fQg~Gwp  136 (448)
T COG2271          61 LSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGF----SPSLFLFAVLWVLNGWFQGMGWP  136 (448)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhcCCCc
Confidence            45579999999999999999999999999999999999999998887766544    34778888889999999999999


Q ss_pred             ccccceeeecccc-chhHhHHHHHHHHHHHHHHHHHh--hhhhH
Q psy4795         171 QVNGLYGTLFRRN-KEAAFSNFRLWESVGFVIAYAYS--THLCA  211 (285)
Q Consensus       171 ~~~ali~~~fp~~-~~~afs~~~l~~~lG~~ig~~~s--~~l~~  211 (285)
                      ++...+..-||++ ||+..|+.|..+|+|.++...+.  ..+..
T Consensus       137 p~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~  180 (448)
T COG2271         137 PCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF  180 (448)
T ss_pred             HHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh
Confidence            9999999999875 59999999999999998888777  45443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.89  E-value=1.6e-08  Score=103.64  Aligned_cols=112  Identities=15%  Similarity=0.168  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccc
Q psy4795          96 VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGL  175 (285)
Q Consensus        96 ~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~al  175 (285)
                      +....++.+++.+++.+++|+++||+|||+++.++.++.+++.+.+.+ .+   +....++..++.|++.+...+..+++
T Consensus       597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~-~~---s~~~ll~~~~l~g~~~~~~~~~~~a~  672 (742)
T TIGR01299       597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSF-GN---SESAMIALLCLFGGLSIAAWNALDVL  672 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-Hc---cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677888999999999999999999999999998887777655443 22   23344444566777666677788899


Q ss_pred             eeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         176 YGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       176 i~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      +++++|++. +.++++.+.+.++|.++|..+++.+..
T Consensus       673 ~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~  709 (742)
T TIGR01299       673 TVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG  709 (742)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999876 999999999999999999999876544

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10054 putative transporter; Provisional

Probab=98.89  E-value=1.4e-07  Score=89.57  Aligned_cols=135  Identities=12%  Similarity=0.124  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhccccc
Q psy4795          95 SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNG  174 (285)
Q Consensus        95 ~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~a  174 (285)
                      ..|.+....++......+..|++.||.++|+.+..+..+..+....+...   .++.+...+...+.|+|.+...+..++
T Consensus       245 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~p~~~~  321 (395)
T PRK10054        245 VVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS---GNSLLLWGMSAAVFTVGEIIYAPGEYM  321 (395)
T ss_pred             HHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc---chHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            56777888888888888889999999999999988887777666544332   234555566778899999888888888


Q ss_pred             ceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHH
Q psy4795         175 LYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARMKLY-VMGVVLVTGFCGYVIVE  233 (285)
Q Consensus       175 li~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~~l~-il~~~lv~~~v~~~~~e  233 (285)
                      .+.+..|++. ++.++.++ ..++|.++|...++.+..+.-.. ...++.+...+.+..+-
T Consensus       322 ~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        322 LIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             HHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            8888888776 88888765 56689999999998887665433 22333344444444444

>TIGR00901 2A0125 AmpG-related permease

Probab=98.89  E-value=6.5e-08  Score=89.63  Aligned_cols=124  Identities=13%  Similarity=0.229  Sum_probs=91.7

Q ss_pred             hhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhccc-----CChhHH-HHHHHHHHHHHHHHHHhCCCCCChHHHH
Q psy4795          84 GAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFI-----GRSPLM-ALGFIVHCCLIWILVVWRPHPNNPKIFF  155 (285)
Q Consensus        84 ~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDri-----Grk~~i-~~g~~l~~i~~~~l~~~~p~~~~~~~~~  155 (285)
                      |.+.+ ..|+  +++|+.... ++...+ .++.|.++||+     ||||.+ +.+.++..++...+.+..+ ..+.+.++
T Consensus        12 ~~~~~-~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~-~~~l~~l~   87 (356)
T TIGR00901        12 PYWLR-SKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP-STDLPLLA   87 (356)
T ss_pred             HHHHH-HcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc-chhHHHHH
Confidence            44444 4465  578876544 444454 88999999997     898874 5666666665555544443 45566677


Q ss_pred             HHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         156 TISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       156 ~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      ...++.+++.+...++..+++.+.+|+++ +.+.+......++|..++..++..+..
T Consensus        88 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~  144 (356)
T TIGR00901        88 GLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLAS  144 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            77778889999999999999999997655 899999999999999999888876643

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.88  E-value=2.2e-08  Score=94.20  Aligned_cols=122  Identities=20%  Similarity=0.316  Sum_probs=91.1

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCCh----hHHHHHHHHHHHHHHHHHHhCCCCCChHHHH
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRS----PLMALGFIVHCCLIWILVVWRPHPNNPKIFF  155 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk----~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~  155 (285)
                      |.|.|+++ +|.  .++|+++.++.+...+++++.|+++||+||+    +.+.++....   . ..+. .. .++.|.++
T Consensus        26 ~l~~~l~~-~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~---~-~~~~-~~-~~~~~~l~   98 (382)
T PRK11128         26 FWSVWLKG-QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF---A-VAFW-FG-AHSFWLLF   98 (382)
T ss_pred             hHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH---H-HHHH-Hh-cccHHHHH
Confidence            44677765 465  6899999999999999999999999999994    2222221111   1 1111 11 35678888


Q ss_pred             HHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         156 TISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       156 ~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      +..++.|++.+...+...++..+ .+++++.+++..+.+.++|.++|..+++.+..
T Consensus        99 i~~~l~g~~~~~~~~~~~a~~~~-~~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~  153 (382)
T PRK11128         99 VAIGLFNLFFSPLVPLTDALANT-WQKQIGLDYGKVRLWGSIAFVIGSALTGKLVS  153 (382)
T ss_pred             HHHHHHHHHHcccccHHHHHHHH-HHhhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            88888899988888877776655 45566889999999999999999999998754

>PRK11462 putative transporter; Provisional

Probab=98.86  E-value=1.6e-06  Score=84.32  Aligned_cols=123  Identities=13%  Similarity=0.099  Sum_probs=84.7

Q ss_pred             hhhhhhccchh-HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q psy4795          84 GAYISCALGVS-SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWG  162 (285)
Q Consensus        84 ~~Y~~~~lg~~-~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~G  162 (285)
                      ..|.+..+|.. ..+.++.+++++.+++.+++++++||+|+|+++..+..+..+..+.++ ..| +++.+..++..+++|
T Consensus       252 ~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~l~g  329 (460)
T PRK11462        252 MYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMF-FVP-MQASITMFVFIFVIG  329 (460)
T ss_pred             hhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH-Hhc-hhHHHHHHHHHHHHH
Confidence            34444445553 345677888899999999999999999999987765554433333322 233 233334455567788


Q ss_pred             Hhhhhhhcccccceeeecc-------ccc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795         163 VGDAVWQTQVNGLYGTLFR-------RNK-EAAFSNFRLWESVGFVIAYAYSTH  208 (285)
Q Consensus       163 ig~g~~~~~~~ali~~~fp-------~~~-~~afs~~~l~~~lG~~ig~~~s~~  208 (285)
                      ++.+..++...+++.|..+       +++ +..++.+.+.+.+|.++|.++++.
T Consensus       330 ~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~  383 (460)
T PRK11462        330 VLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGW  383 (460)
T ss_pred             HHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888777788887755       334 566788889999999999877655

>PRK09952 shikimate transporter; Provisional

Probab=98.85  E-value=3.1e-08  Score=95.28  Aligned_cols=104  Identities=14%  Similarity=0.142  Sum_probs=80.8

Q ss_pred             HHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCC-----hHHHHHHHHHHHHhhhhhhcccccceee
Q psy4795         104 GVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNN-----PKIFFTISGLWGVGDAVWQTQVNGLYGT  178 (285)
Q Consensus       104 gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~-----~~~~~~~~~l~Gig~g~~~~~~~ali~~  178 (285)
                      -++..+++++.|+++||+|||+++..+.++..++.+...+ .|+-..     ++.+++..++.|++.|...+....++.|
T Consensus        74 ~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e  152 (438)
T PRK09952         74 FLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGL-LPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVE  152 (438)
T ss_pred             HHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence            3667889999999999999999999998888877665544 221111     1246677899999999999888999999


Q ss_pred             eccccc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795         179 LFRRNK-EAAFSNFRLWESVGFVIAYAYSTH  208 (285)
Q Consensus       179 ~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~  208 (285)
                      .+|+++ +...+......++|..++..+...
T Consensus       153 ~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~  183 (438)
T PRK09952        153 SAPKNKKAFYSSGVQVGYGVGLLLSTGLVSL  183 (438)
T ss_pred             hCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998766 777788888888888887655443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.85  E-value=5.7e-07  Score=86.03  Aligned_cols=125  Identities=20%  Similarity=0.290  Sum_probs=105.7

Q ss_pred             hhhhhhhccchh-HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q psy4795          83 WGAYISCALGVS-SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLW  161 (285)
Q Consensus        83 t~~Y~~~~lg~~-~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~  161 (285)
                      .+.|.+..+|.+ ..+..+....+...++.++.++++||+|+|+.+..+.++..++...+.+..+  ++.+.+++...+.
T Consensus       248 ~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~l~  325 (428)
T PF13347_consen  248 LPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP--GSPWLVLILFILA  325 (428)
T ss_pred             HHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh--hhHHHHHHHHHHh
Confidence            367777778874 6778888899999999999999999999999999999998887776655432  5678888989999


Q ss_pred             HHhhhhhhcccccceeeeccc-------cc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         162 GVGDAVWQTQVNGLYGTLFRR-------NK-EAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       162 Gig~g~~~~~~~ali~~~fp~-------~~-~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                      |++.+..+...+++++|..+.       ++ +..+|.+.+.+.+|..++..+.+.+
T Consensus       326 gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~  381 (428)
T PF13347_consen  326 GIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL  381 (428)
T ss_pred             HhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence            999999999999999998762       33 7888899999999999998876653

>TIGR00896 CynX cyanate transporter

Probab=98.84  E-value=4.5e-07  Score=84.08  Aligned_cols=126  Identities=13%  Similarity=0.090  Sum_probs=89.9

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhccc-CChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFI-GRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTIS  158 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDri-Grk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~  158 (285)
                      |.|.|+++ .|.  .+.|......+++.++++++.|+++||+ +||+.+..+..+..++...+.+ .++ ++. .  ...
T Consensus       219 ~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~-~--~~~  292 (355)
T TIGR00896       219 WLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLF-APM-HGL-W--AWA  292 (355)
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH-hhh-hHH-H--HHH
Confidence            34777765 465  5788999999999999999999999999 5666666776666666554433 331 221 1  135


Q ss_pred             HHHHHhhhhhhcccccceeeecc-ccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy4795         159 GLWGVGDAVWQTQVNGLYGTLFR-RNK-EAAFSNFRLWESVGFVIAYAYSTHLCARM  213 (285)
Q Consensus       159 ~l~Gig~g~~~~~~~ali~~~fp-~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~  213 (285)
                      .++|++.+...+...+.+.+..+ +++ +.+.+..+...++|..++..+.+.+..+.
T Consensus       293 ~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~  349 (355)
T TIGR00896       293 LVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS  349 (355)
T ss_pred             HHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            67899988888777776665554 344 77777877788888888988888776543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.84  E-value=6.7e-08  Score=91.52  Aligned_cols=126  Identities=13%  Similarity=0.136  Sum_probs=96.8

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhccc-----CChh-HHHHHHHHHHHHHHHHHHhCCCCCChHH
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFI-----GRSP-LMALGFIVHCCLIWILVVWRPHPNNPKI  153 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDri-----Grk~-~i~~g~~l~~i~~~~l~~~~p~~~~~~~  153 (285)
                      -.|.|+++. |+  +++|++......  .+..++.|+++||+     |||| .+..+.+...++...+.+..+ .++.+.
T Consensus        21 ~~~~~l~~~-g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~-~~~~~~   96 (402)
T PRK11902         21 TLQAWMTVE-GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPP-HAALWP   96 (402)
T ss_pred             HHHHHHHHc-CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCc-cchHHH
Confidence            347777753 65  689977665554  58899999999999     8876 677777777666665554433 455677


Q ss_pred             HHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         154 FFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       154 ~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      +++..++.++..+...++..+++.+.+|+++ +.+.++.....++|..++..++..+..
T Consensus        97 l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~  155 (402)
T PRK11902         97 LAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLAD  155 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence            7777778889999999999999999998874 889999888889999888887766544

>PRK09669 putative symporter YagG; Provisional

Probab=98.82  E-value=5.3e-08  Score=93.60  Aligned_cols=126  Identities=13%  Similarity=0.143  Sum_probs=94.4

Q ss_pred             hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcc----cCC-hhHHHHHHHHHHHHHHHHHHhCCCCC---
Q psy4795          80 SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKF----IGR-SPLMALGFIVHCCLIWILVVWRPHPN---  149 (285)
Q Consensus        80 ~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDr----iGr-k~~i~~g~~l~~i~~~~l~~~~p~~~---  149 (285)
                      ..|.+.|+++.+|+  ..+|.++.+.-+..++..|+.|+++||    +|| ||.++.+.+...++...+ ++.|+.+   
T Consensus        29 ~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~-f~~p~~~~~~  107 (444)
T PRK09669         29 MLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLT-FYTPDFGATG  107 (444)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHH-HhCCCCCcch
Confidence            56778888899998  579999999999999999999999998    777 455667777766665443 4455321   


Q ss_pred             ChHHHHHHHHHHHHhhhhhhcccccceeeecc--ccchhHhHHHHHHHHHHHHHHHHHh
Q psy4795         150 NPKIFFTISGLWGVGDAVWQTQVNGLYGTLFR--RNKEAAFSNFRLWESVGFVIAYAYS  206 (285)
Q Consensus       150 ~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp--~~~~~afs~~~l~~~lG~~ig~~~s  206 (285)
                      ..+.+++...+++.+.++++.+.+++.+++.+  ++|....+......++|..++..+.
T Consensus       108 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~  166 (444)
T PRK09669        108 KIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIA  166 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23455555677788888999999999999875  3445566777777888877776543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.82  E-value=5.4e-08  Score=94.57  Aligned_cols=126  Identities=17%  Similarity=0.269  Sum_probs=94.0

Q ss_pred             Hhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhc----ccCC-hhHHHHHHHHHHHHHHHHHHhCCCCCC-
Q psy4795          79 ISGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMK----FIGR-SPLMALGFIVHCCLIWILVVWRPHPNN-  150 (285)
Q Consensus        79 ~~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsD----riGr-k~~i~~g~~l~~i~~~~l~~~~p~~~~-  150 (285)
                      ...|.+.|+++.+|+  ..+|.++++..+..++..|+.|+++|    |+|| ||.++.+.+...+++..+ ++.|+.++ 
T Consensus        25 ~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~ll-f~~p~~~~~  103 (473)
T PRK10429         25 VYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLL-FSAHLFEGT  103 (473)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHH-HcCCCCCcc
Confidence            356778888998888  57999999999999999999999999    5699 666777877777665444 33442221 


Q ss_pred             --hHHHHHHHHHHHHhhhhhhcccccceeeecc--ccchhHhHHHHHHHHHHHHHHHHH
Q psy4795         151 --PKIFFTISGLWGVGDAVWQTQVNGLYGTLFR--RNKEAAFSNFRLWESVGFVIAYAY  205 (285)
Q Consensus       151 --~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp--~~~~~afs~~~l~~~lG~~ig~~~  205 (285)
                        .+.+++...+++++..+++.+.+++..++.+  ++|...++..+.+.++|..++..+
T Consensus       104 ~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~  162 (473)
T PRK10429        104 AQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGF  162 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              2344555667889999999999999999874  445666777688888875555443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.82  E-value=5.1e-07  Score=85.15  Aligned_cols=125  Identities=9%  Similarity=0.086  Sum_probs=92.9

Q ss_pred             hhhhhhcc---c--hhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q psy4795          84 GAYISCAL---G--VSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTIS  158 (285)
Q Consensus        84 ~~Y~~~~l---g--~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~  158 (285)
                      +.|.+..+   +  ....|+......+.+.++.+..|++.||+|||+.+.++.++..+.......    .++++..+...
T Consensus       239 ~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~----~~~~~~~~~~~  314 (396)
T TIGR00882       239 ANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSF----ATTALEVVILK  314 (396)
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh----cCChHHHHHHH
Confidence            56665544   2  246788888889999999999999999999999998888776665544332    23456666777


Q ss_pred             HHHHHhhhhhhcccccceeeeccccc-hhHhHH-HHHHHHHHHHHHHHHhhhhhHH
Q psy4795         159 GLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSN-FRLWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       159 ~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~-~~l~~~lG~~ig~~~s~~l~~~  212 (285)
                      .+.|++....+.....+..+.+|++. +++.+. ++..+++|..++..+++.+...
T Consensus       315 ~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~  370 (396)
T TIGR00882       315 MLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS  370 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh
Confidence            88888877766655566666676665 666665 7889999999999888887553

>TIGR00898 2A0119 cation transport protein

Probab=98.82  E-value=4.7e-07  Score=88.05  Aligned_cols=108  Identities=16%  Similarity=0.093  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhccccccee
Q psy4795          98 YVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYG  177 (285)
Q Consensus        98 ~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~  177 (285)
                      ......+++++.+.++.++++||+|||+++.++.++..++.+.+.. .++ .+.+......++.+++.+...+..+.+..
T Consensus       359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (505)
T TIGR00898       359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLF-VPV-DLYFLRTALAVLGKFGITSAFQMVYLYTA  436 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-cCC-CchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4455677888899999999999999999999988877776655443 332 22244444455666666667777888999


Q ss_pred             eeccccc-hhHhHHHHHHHHHHHHHHHHHhh
Q psy4795         178 TLFRRNK-EAAFSNFRLWESVGFVIAYAYST  207 (285)
Q Consensus       178 ~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~  207 (285)
                      |.+|++. +.+.+..+....+|..++..+.+
T Consensus       437 e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~  467 (505)
T TIGR00898       437 ELYPTVVRNLGVGVCSTMARVGSIISPFLVY  467 (505)
T ss_pred             ccccHHHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence            9999875 89999999999999999988876

>KOG0569|consensus

Probab=98.81  E-value=3.4e-08  Score=96.29  Aligned_cols=109  Identities=12%  Similarity=0.098  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccce
Q psy4795          97 GYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLY  176 (285)
Q Consensus        97 G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali  176 (285)
                      ..+..++.+|.++|+++.|.++||+|||..+.+..++..++.++...... .++..++.+..++.|+..|+.....+-++
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~-~~~~e~li~GR~i~Gl~~gl~~~~~pmyl  141 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS-APSFEMLILGRLIVGLACGLSTGLVPMYL  141 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            36778899999999999999999999999988888877776665444433 45678889999999999999999999999


Q ss_pred             eeeccccc-hhHhHHHHHHHHHHHHHHHHHh
Q psy4795         177 GTLFRRNK-EAAFSNFRLWESVGFVIAYAYS  206 (285)
Q Consensus       177 ~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s  206 (285)
                      .|.-|++. |...+...+.-++|..+|..++
T Consensus       142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~  172 (485)
T KOG0569|consen  142 TEISPKNLRGALGTLLQIGVVIGILLGQVLG  172 (485)
T ss_pred             hhcChhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            99999876 8888899999999999986664

>KOG3764|consensus

Probab=98.81  E-value=7e-09  Score=97.73  Aligned_cols=136  Identities=20%  Similarity=0.329  Sum_probs=113.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795          94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN  173 (285)
Q Consensus        94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~  173 (285)
                      .++|++..+..+.+.+.+|+.|.+.||+|+|..+++|++++....+++-+    .++++..+++..+.|+|+++..+.-.
T Consensus       106 ~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFaf----g~sy~~l~vAR~LQgvgsA~~~tsgl  181 (464)
T KOG3764|consen  106 TQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAF----GNSYPMLFVARSLQGVGSAFADTSGL  181 (464)
T ss_pred             cchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHH----cchhHHHHHHHHHhhhhHHHHHhhhH
Confidence            57999999999999999999999999999999999999998888776655    56788999999999999999999999


Q ss_pred             cceeeeccccc--hhHhHHHHHHHHHHHHHHHHHhhhhhHHH----HHHHHHHHHHH-HHHHHHHHH
Q psy4795         174 GLYGTLFRRNK--EAAFSNFRLWESVGFVIAYAYSTHLCARM----KLYVMGVVLVT-GFCGYVIVE  233 (285)
Q Consensus       174 ali~~~fp~~~--~~afs~~~l~~~lG~~ig~~~s~~l~~~~----~l~il~~~lv~-~~v~~~~~e  233 (285)
                      +++++.||+|.  +.+.++---+.++|..+|+-+++.++...    -..++.+++++ +..-++.+|
T Consensus       182 amlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~  248 (464)
T KOG3764|consen  182 AMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIE  248 (464)
T ss_pred             HHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeC
Confidence            99999999876  78888888888999999999999987643    24444444433 344444444

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.80  E-value=2.1e-07  Score=88.52  Aligned_cols=146  Identities=14%  Similarity=0.115  Sum_probs=115.3

Q ss_pred             hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhh
Q psy4795          88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGD  165 (285)
Q Consensus        88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~  165 (285)
                      .+.+|+  ..+|+.+..|+.+..+++|+...+.||+.||++++..+.+..++-+...+    .+|+++..+..++.|+..
T Consensus        40 A~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~al----Ap~f~~Ll~aR~~~g~a~  115 (394)
T COG2814          40 AADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSAL----APSFAVLLLARALAGLAH  115 (394)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHH
Confidence            355777  57999999999999999999999999999999999988887777766555    568899999999999999


Q ss_pred             hhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4795         166 AVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARM-KLYVMGVVLVTGFCGYVIVEVRHM  237 (285)
Q Consensus       166 g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~-~l~il~~~lv~~~v~~~~~e~~~~  237 (285)
                      |.+.+...++..++.|+|+ ++|.++-..-..++.++|.-+++++...+ .=....++..++.++..+.-....
T Consensus       116 G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         116 GVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999877 99988887777777777766666655432 112233444455555555555544

>TIGR00788 fbt folate/biopterin transporter

Probab=98.79  E-value=1.9e-07  Score=91.04  Aligned_cols=188  Identities=12%  Similarity=-0.013  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHH-HHHHHhcccC----CC--Cc---------------c--------
Q psy4795          25 FGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCL-IWILVVWRPH----PN--NP---------------K--------   74 (285)
Q Consensus        25 ~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~-l~~fl~~e~~----~~--~p---------------~--------   74 (285)
                      .+++..+++.+.|.+.+++|++..++...++.++. +..+...|++    |+  +.               .        
T Consensus       167 ~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  246 (468)
T TIGR00788       167 SATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLR  246 (468)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHH
Confidence            44788888888899999999976665544444443 3334444543    21  10               0        


Q ss_pred             -------h----HHHHhhhh-------hh--hhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHH
Q psy4795          75 -------I----FFTISGLW-------GA--YISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFI  132 (285)
Q Consensus        75 -------l----~~~~~~ft-------~~--Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~  132 (285)
                             +    .|....|.       ..  +.++.+|.  +.+|.+....+++++++..+.+++.+|++.|+++.++.+
T Consensus       247 ~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~  326 (468)
T TIGR00788       247 GAIQLLEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTL  326 (468)
T ss_pred             HHHhcHHHHHHHHHHHHHHhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence                   0    00000000       11  22334665  579999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHH----HhCCC--CCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHH
Q psy4795         133 VHCCLIWILV----VWRPH--PNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAY  205 (285)
Q Consensus       133 l~~i~~~~l~----~~~p~--~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~  205 (285)
                      +..++.....    .|...  -++.+.+....++-+++.++...+...++++..|++. ++.++++...+|+|..++..+
T Consensus       327 l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~  406 (468)
T TIGR00788       327 LYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFL  406 (468)
T ss_pred             HHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHH
Confidence            8877664322    12111  0233455566778889999999999999999999877 999999999999999999998


Q ss_pred             hhhhhHH
Q psy4795         206 STHLCAR  212 (285)
Q Consensus       206 s~~l~~~  212 (285)
                      ++.+..+
T Consensus       407 gg~l~~~  413 (468)
T TIGR00788       407 GVLLMET  413 (468)
T ss_pred             HHHHHHH
Confidence            8887554

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK15075 citrate-proton symporter; Provisional

Probab=98.79  E-value=1.1e-07  Score=91.07  Aligned_cols=100  Identities=13%  Similarity=0.105  Sum_probs=79.9

Q ss_pred             HHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChH--------HHHHHHHHHHHhhhhhhccccccee
Q psy4795         106 VNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPK--------IFFTISGLWGVGDAVWQTQVNGLYG  177 (285)
Q Consensus       106 ~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~--------~~~~~~~l~Gig~g~~~~~~~ali~  177 (285)
                      ...+++++.|+++||+|||++++.+.++..++.....+ .+   +++        .+++..++.|++.+...+....++.
T Consensus        68 ~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~-~~---~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~  143 (434)
T PRK15075         68 MRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAF-VP---GYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLA  143 (434)
T ss_pred             HhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh-CC---cHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHH
Confidence            33578899999999999999999999887776655444 22   222        3466788999999998888889999


Q ss_pred             eeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         178 TLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       178 ~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                      |.+|+++ +.+.+.+....++|..++..++..+
T Consensus       144 e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l  176 (434)
T PRK15075        144 EIATPGRKGFYTSWQSASQQVAVVFAALLGYLL  176 (434)
T ss_pred             hhCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998765 9999999998888888877776654

>KOG2504|consensus

Probab=98.79  E-value=7.7e-08  Score=94.83  Aligned_cols=146  Identities=16%  Similarity=0.275  Sum_probs=114.9

Q ss_pred             hhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhH--HHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q psy4795          84 GAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPL--MALGFIVHCCLIWILVVWRPHPNNPKIFFTISG  159 (285)
Q Consensus        84 ~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~--i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~  159 (285)
                      |.|.. ..|.  .+..+++.+.++.+.++-++.|.++|+...++.  ..++.+...++.+    +.|-..+++.+.....
T Consensus       322 ~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~----~~p~~~~~~~l~~~~~  396 (509)
T KOG2504|consen  322 PSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARL----FLPFATTYVGLIVFSI  396 (509)
T ss_pred             HHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHH----HHHHhccHHHHHHHHH
Confidence            55554 5566  568899999999999999999999999874444  3344444444332    2233566788888899


Q ss_pred             HHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHHH-----HHHHHHHHHHHHHHHHHHH
Q psy4795         160 LWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARMK-----LYVMGVVLVTGFCGYVIVE  233 (285)
Q Consensus       160 l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~~-----l~il~~~lv~~~v~~~~~e  233 (285)
                      ++|++.|.+..-.+..+.++.+.++ ..++++..+++.++..+|.-+.+.+...+.     +|...+..+++.++++...
T Consensus       397 ~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  397 LFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            9999999999988889999999888 999999999999999999999888765443     6777777788888888777


Q ss_pred             H
Q psy4795         234 V  234 (285)
Q Consensus       234 ~  234 (285)
                      +
T Consensus       477 ~  477 (509)
T KOG2504|consen  477 E  477 (509)
T ss_pred             H
Confidence            4

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.78  E-value=6.1e-07  Score=85.22  Aligned_cols=118  Identities=15%  Similarity=0.136  Sum_probs=96.9

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCC---CChHHHHH
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHP---NNPKIFFT  156 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~---~~~~~~~~  156 (285)
                      +.|.|+++..|.  ..+|.....++....+.-+++|+|+||+|.+++.........++...+....+..   .+.+.++.
T Consensus       240 ~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~  319 (417)
T COG2223         240 YLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVA  319 (417)
T ss_pred             HHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHH
Confidence            348888998888  3678999999999999999999999999999999988888777776655544322   45566666


Q ss_pred             HHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHH
Q psy4795         157 ISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGF  199 (285)
Q Consensus       157 ~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~  199 (285)
                      ....+++..|.-|...+.++...||++.+.+.++-...-++|-
T Consensus       320 ~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGG  362 (417)
T COG2223         320 VFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGG  362 (417)
T ss_pred             HHHHHHHHhccCcchheeechHHHHhhhhHHHHHHHHhccccc
Confidence            6777888888889999999999999988888888888888873

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.77  E-value=4.2e-11  Score=114.51  Aligned_cols=115  Identities=17%  Similarity=0.127  Sum_probs=96.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795          94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN  173 (285)
Q Consensus        94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~  173 (285)
                      .+.++......++..+|++++|.++||+|||+.+.++.++..++.++..+. +..++++.+.+..++.|++.|...+...
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~R~~~G~~~g~~~~~~~  124 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFA-PSYNNFWMLLIGRFLIGFGIGGAYVVSP  124 (451)
T ss_pred             HHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence            356678888889999999999999999999999999999888877665542 2123678888889999999999999999


Q ss_pred             cceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         174 GLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       174 ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                      .++.|..|+++ +...+..+.+..+|..++..++..+
T Consensus       125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~  161 (451)
T PF00083_consen  125 IYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV  161 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccc
Confidence            99999987765 8888899999999998888776544

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.77  E-value=8.5e-08  Score=93.18  Aligned_cols=119  Identities=12%  Similarity=0.146  Sum_probs=104.4

Q ss_pred             hhhhccch--hH-HHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q psy4795          86 YISCALGV--SS-VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWG  162 (285)
Q Consensus        86 Y~~~~lg~--~~-~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~G  162 (285)
                      |+.+.+|+  .+ .|.+...+..+.+++.+.+|.++||+|.|+++.++.+...+..+++.+    .++.+.+.++.+++|
T Consensus        51 ~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~f----a~Sl~~L~i~R~llG  126 (511)
T TIGR00806        51 YLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLL----GTSVWHMQLMEVFYS  126 (511)
T ss_pred             HHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            55567777  56 889999999999999999999999999999999999988887766555    345778888899999


Q ss_pred             Hhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         163 VGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       163 ig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                      ++.|... ..+.++...+|+++ +.+.|..+...++|.+++..++..+
T Consensus       127 vaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll  173 (511)
T TIGR00806       127 VTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL  173 (511)
T ss_pred             HHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999 99999999998765 9999999999999999999988763

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.77  E-value=4.2e-08  Score=93.86  Aligned_cols=159  Identities=18%  Similarity=0.177  Sum_probs=111.2

Q ss_pred             hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhc----ccCChhH-HHHHHHHHHHHHHHHHHhCCCCC---
Q psy4795          80 SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMK----FIGRSPL-MALGFIVHCCLIWILVVWRPHPN---  149 (285)
Q Consensus        80 ~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsD----riGrk~~-i~~g~~l~~i~~~~l~~~~p~~~---  149 (285)
                      ..|.+.|+++.+|+  ..+|.++.+..+.+++..|+.|+++|    |+|||+. ++.|.+...+++++++.-.|.+.   
T Consensus        21 ~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~  100 (428)
T PF13347_consen   21 SSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFT  100 (428)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhh
Confidence            45677888899888  47999999999999999999999999    7997666 55677777777766554334221   


Q ss_pred             -ChHHHHHHHHHHHHhhhhhhcccccceeeeccc--cchhHhHHHHHHHHHHHHHHHHHhhhhhH--------HHHHHHH
Q psy4795         150 -NPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRR--NKEAAFSNFRLWESVGFVIAYAYSTHLCA--------RMKLYVM  218 (285)
Q Consensus       150 -~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~--~~~~afs~~~l~~~lG~~ig~~~s~~l~~--------~~~l~il  218 (285)
                       .....++...++.++...++.+..++..++.++  ||....+..+++..+|..+..+..+.+-.        +...+..
T Consensus       101 ~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~  180 (428)
T PF13347_consen  101 AKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMA  180 (428)
T ss_pred             hHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHH
Confidence             123346667778999999999999999999864  44777778888888888655544443221        0123334


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy4795         219 GVVLVTGFCGYVIVEVRHMM  238 (285)
Q Consensus       219 ~~~lv~~~v~~~~~e~~~~~  238 (285)
                      .+..++..+++.+.-...|+
T Consensus       181 ~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  181 LVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHHHHHHhhhhhheeee
Confidence            44455555555555544444

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.75  E-value=7.3e-07  Score=85.12  Aligned_cols=125  Identities=8%  Similarity=-0.044  Sum_probs=78.6

Q ss_pred             hhhhhhhhc-cch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhH-HHHHHHHHHHHHHHHHHhCCCCCChHHHHHH
Q psy4795          82 LWGAYISCA-LGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPL-MALGFIVHCCLIWILVVWRPHPNNPKIFFTI  157 (285)
Q Consensus        82 ft~~Y~~~~-lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~-i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~  157 (285)
                      |.|.|+++. .|.  .+++......+++..++.++.|+++||++||+. +....+...+...+...  . +++ ......
T Consensus       264 ~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~--~-~~~-~~~~~~  339 (412)
T TIGR02332       264 WTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASA--T-DHN-LIQLLG  339 (412)
T ss_pred             HHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHh--c-CCH-HHHHHH
Confidence            458888763 354  467888999999999999999999999997775 33343344333322211  1 222 222222


Q ss_pred             HHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         158 SGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       158 ~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      ..+.++|.....+.......+.+|++. +.+.++.+.+.++|.+++..+.+.+-
T Consensus       340 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~  393 (412)
T TIGR02332       340 IIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILK  393 (412)
T ss_pred             HHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccccc
Confidence            222333332222223344456677665 99999999999999999987765543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.75  E-value=3.9e-06  Score=81.51  Aligned_cols=123  Identities=15%  Similarity=0.213  Sum_probs=101.0

Q ss_pred             hhhhhhccchh--HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q psy4795          84 GAYISCALGVS--SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLW  161 (285)
Q Consensus        84 ~~Y~~~~lg~~--~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~  161 (285)
                      ..|.+-.+|-.  ...+.+.....+..++.++..++++|+|+|++...+.++..++...++++.  +++.++.++...+.
T Consensus       260 ~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~--~~~~~l~~~~~~i~  337 (467)
T COG2211         260 VYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP--AGSVVLIVVALIIA  337 (467)
T ss_pred             heeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc--CcchHHHHHHHHHH
Confidence            56677777773  455777788888888899999999999999999999999888887766654  46677888888899


Q ss_pred             HHhhhhhhcccccceeeecc-------ccc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795         162 GVGDAVWQTQVNGLYGTLFR-------RNK-EAAFSNFRLWESVGFVIAYAYSTH  208 (285)
Q Consensus       162 Gig~g~~~~~~~ali~~~fp-------~~~-~~afs~~~l~~~lG~~ig~~~s~~  208 (285)
                      ++|.+..++..-++++|..+       +++ |..+|.+.+.+-+|.+++-++.+.
T Consensus       338 ~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~  392 (467)
T COG2211         338 GVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW  392 (467)
T ss_pred             HHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998753       234 788999999999999999876555

>PRK09848 glucuronide transporter; Provisional

Probab=98.74  E-value=2e-07  Score=89.63  Aligned_cols=154  Identities=13%  Similarity=0.174  Sum_probs=93.7

Q ss_pred             hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhccc----CChhHH-HHHHHHHHHHHHHHHHhCCCC----
Q psy4795          80 SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFI----GRSPLM-ALGFIVHCCLIWILVVWRPHP----  148 (285)
Q Consensus        80 ~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDri----Grk~~i-~~g~~l~~i~~~~l~~~~p~~----  148 (285)
                      ..|.+.|+++.+|+  .++|.++.+..+..++..|+.|+++||.    |||+.. ..+.+...+...+++ +.|.+    
T Consensus        28 ~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  106 (448)
T PRK09848         28 ALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVF-WVPTDWSHS  106 (448)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHH-hCcCCCCcc
Confidence            34556688998887  5899999999999999999999999985    777654 566655554443332 23311    


Q ss_pred             CChHHHHHHHHHHHHhhhhhhcccccceeeeccc--cchhHhHHHHHHHH-----HHHHHHHHHhhhhh---HHHHHHHH
Q psy4795         149 NNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRR--NKEAAFSNFRLWES-----VGFVIAYAYSTHLC---ARMKLYVM  218 (285)
Q Consensus       149 ~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~--~~~~afs~~~l~~~-----lG~~ig~~~s~~l~---~~~~l~il  218 (285)
                      ...+..+....+++++.++++++.+++..++.++  ++....+...+..+     +|..++..+++...   ........
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~  186 (448)
T PRK09848        107 SKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWT  186 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH
Confidence            1223345556788999999999999988777644  33443333333333     33444444433321   11111222


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy4795         219 GVVLVTGFCGYVIVEV  234 (285)
Q Consensus       219 ~~~lv~~~v~~~~~e~  234 (285)
                      .++.+++.+++.+...
T Consensus       187 ~~~~v~~~~~~~~~~~  202 (448)
T PRK09848        187 IVLAIAGMVLYFICFK  202 (448)
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            3445555555555543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.74  E-value=3.8e-07  Score=83.77  Aligned_cols=130  Identities=13%  Similarity=0.059  Sum_probs=87.4

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHH--HHHHHHHHhCCCCCChHHHHHH
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHC--CLIWILVVWRPHPNNPKIFFTI  157 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~--i~~~~l~~~~p~~~~~~~~~~~  157 (285)
                      +.|.|+++.+|.  .+.++......++..++.++.|+++||.++++..........  ..........+ .++.+...+.
T Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  316 (379)
T TIGR00881       238 WSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNP-AANPLMDLIC  316 (379)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCc-chhHHHHHHH
Confidence            347777777776  468899999999999999999999998643322222221111  11112222222 2334455555


Q ss_pred             HHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795         158 SGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       158 ~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~  212 (285)
                      .++.|+......+.......+.+|+++ +.+.++++...++|..++..+.+.+..+
T Consensus       317 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  372 (379)
T TIGR00881       317 LFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG  372 (379)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHh
Confidence            666676555555555677888898766 9999999999999999999888877553

>KOG2532|consensus

Probab=98.74  E-value=8.2e-08  Score=93.63  Aligned_cols=147  Identities=15%  Similarity=0.183  Sum_probs=121.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795          94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN  173 (285)
Q Consensus        94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~  173 (285)
                      ++-|++...+..|.+++...+|++.||+|-|+++..+.++..++.++.-+..  ..+.+.++++.++.|++.|...+.++
T Consensus        73 ~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa--~~~~~~~~~~R~lqGl~~g~~~pa~~  150 (466)
T KOG2532|consen   73 TEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAA--SIGFYLLLVLRFLQGLGQGVLFPAIG  150 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH--HhcchhhHHHHHHhHHHHhHHHhhhh
Confidence            5788999999999999999999999999999999999888877765543322  23345778889999999999999999


Q ss_pred             cceeeecccc-chhHhHHHHHHHHHHHHHHHHHhhhhhHH---H--HHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q psy4795         174 GLYGTLFRRN-KEAAFSNFRLWESVGFVIAYAYSTHLCAR---M--KLYVMGVVLVTGFCGYVIVEVRHMMKARR  242 (285)
Q Consensus       174 ali~~~fp~~-~~~afs~~~l~~~lG~~ig~~~s~~l~~~---~--~l~il~~~lv~~~v~~~~~e~~~~~~~~~  242 (285)
                      .+...-.|++ ++...++..-...+|.+++..+++.+|..   |  -.|+..++.++-.+.|.++..-..+|+|+
T Consensus       151 ~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~  225 (466)
T KOG2532|consen  151 SILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPN  225 (466)
T ss_pred             ceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence            9999999865 58999999999999999999999999865   4  38888888888888777777655555443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.74  E-value=3.2e-07  Score=87.31  Aligned_cols=143  Identities=17%  Similarity=0.230  Sum_probs=109.6

Q ss_pred             hhhhccchh--HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q psy4795          86 YISCALGVS--SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGV  163 (285)
Q Consensus        86 Y~~~~lg~~--~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gi  163 (285)
                      |....+|++  +...+.+...++.++++++.|+|.||+|.|+++..+.++..+..+..++...    ..-+++...+.|.
T Consensus       278 fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~----~~~f~i~gll~g~  353 (438)
T COG2270         278 FGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEG----ELDFWILGLLVGT  353 (438)
T ss_pred             HHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccc----cHHHHHHHHHHHH
Confidence            333445663  4667778888899999999999999999999999998877666655554322    3455666788899


Q ss_pred             hhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHH-----HHHHHHHHHHHHHHHHHHH
Q psy4795         164 GDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARM-----KLYVMGVVLVTGFCGYVIV  232 (285)
Q Consensus       164 g~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~-----~l~il~~~lv~~~v~~~~~  232 (285)
                      ..|-.|...-+++++++|+++ ++-|+.|++..-.++..|.+.-+.+...+     -...+++++.++.+.+..+
T Consensus       354 s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v  428 (438)
T COG2270         354 SLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRV  428 (438)
T ss_pred             hcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEee
Confidence            999999999999999999998 99999999999999999988877665433     3455555556666555443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.73  E-value=4.5e-07  Score=83.79  Aligned_cols=117  Identities=14%  Similarity=0.174  Sum_probs=88.0

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISG  159 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~  159 (285)
                      +.|.|+++.+|.  .+.+....+..+...++.+++|+++||+|||+.+..+......+...+......+++.+..+....
T Consensus       247 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (366)
T TIGR00886       247 IFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFV  326 (366)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHH
Confidence            347788888786  468888899999999999999999999999988877776655555444332221114555555556


Q ss_pred             HHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHH
Q psy4795         160 LWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVG  198 (285)
Q Consensus       160 l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG  198 (285)
                      +.+++.|..++...++..+.+|++++++.++.+..+++|
T Consensus       327 ~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       327 ALFFFSGAGNGSTFALVPHIFRRATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHhccccchhhhcchhhchhhcccHHHHHHHhccCC
Confidence            666777777788888889999988899999988888765

>TIGR01272 gluP glucose/galactose transporter

Probab=98.73  E-value=2.3e-06  Score=79.02  Aligned_cols=125  Identities=11%  Similarity=0.025  Sum_probs=93.8

Q ss_pred             hhhhhhhhc--cch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHH
Q psy4795          82 LWGAYISCA--LGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTI  157 (285)
Q Consensus        82 ft~~Y~~~~--lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~  157 (285)
                      +.+.|+.+.  +|.  ++.++....+..+.+++.+++++++||+|+++++..+.++..++.++.... +   +... ...
T Consensus       162 w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~-~---~~~~-~~~  236 (310)
T TIGR01272       162 FLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT-H---GYVA-MWF  236 (310)
T ss_pred             HHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-C---CHHH-HHH
Confidence            458888753  465  578888999999999999999999999999999888877766655433332 1   2222 234


Q ss_pred             HHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795         158 SGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       158 ~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~  212 (285)
                      ..+.|++.+...|...+...+.+|++.+++.++. ....+|.++++.+-+.+...
T Consensus       237 ~~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~  290 (310)
T TIGR01272       237 VLALGLFNSIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADC  290 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHh
Confidence            5578999999999999999999988777777775 44567888888776666554

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.72  E-value=2.2e-06  Score=83.48  Aligned_cols=101  Identities=12%  Similarity=0.098  Sum_probs=71.0

Q ss_pred             hhhhhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCC--CChHHHHHHHH
Q psy4795          82 LWGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHP--NNPKIFFTISG  159 (285)
Q Consensus        82 ft~~Y~~~~lg~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~--~~~~~~~~~~~  159 (285)
                      +.|.|.++..+.........+.++...+..|++|+++||+|+++++.++.+...++..+.+...|.+  .+.+.+.+...
T Consensus       274 ~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~  353 (462)
T PRK15034        274 GFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFM  353 (462)
T ss_pred             HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence            4467766655332233345567888999999999999999999999999887777665555555533  34555555555


Q ss_pred             HHHHhhhhhhcccccceeeeccc
Q psy4795         160 LWGVGDAVWQTQVNGLYGTLFRR  182 (285)
Q Consensus       160 l~Gig~g~~~~~~~ali~~~fp~  182 (285)
                      .+.++.|+-|...+-++.+.||+
T Consensus       354 ~l~~~~G~gngsvfk~ip~~f~~  376 (462)
T PRK15034        354 GLFLTAGLGSGSTFQMIAVIFRQ  376 (462)
T ss_pred             HHHHHhcccchHHHHhhHHHHhh
Confidence            55567777777778888888875

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.72  E-value=1.2e-08  Score=102.99  Aligned_cols=123  Identities=11%  Similarity=0.089  Sum_probs=101.3

Q ss_pred             hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhC----C---------------
Q psy4795          88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWR----P---------------  146 (285)
Q Consensus        88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~----p---------------  146 (285)
                      ++.+++  .+.|++...+-++..++.++.|++.||.|||+.+.+|.++.+++.++..+-.    +               
T Consensus        60 ek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~  139 (633)
T TIGR00805        60 ERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSS  139 (633)
T ss_pred             hhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccc
Confidence            344555  5789999999999999999999999999999999999988887766543210    0               


Q ss_pred             --------C--------------------CCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHH
Q psy4795         147 --------H--------------------PNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESV  197 (285)
Q Consensus       147 --------~--------------------~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~l  197 (285)
                              +                    +..+..+++..++.|+|.+...+...+++.|.+|+++ +...++++....+
T Consensus       140 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~i  219 (633)
T TIGR00805       140 ANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVF  219 (633)
T ss_pred             cccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHh
Confidence                    0                    0023456678999999999999999999999998776 9999999999999


Q ss_pred             HHHHHHHHhhhhh
Q psy4795         198 GFVIAYAYSTHLC  210 (285)
Q Consensus       198 G~~ig~~~s~~l~  210 (285)
                      |.++|+.+++.+.
T Consensus       220 G~~lG~llgg~l~  232 (633)
T TIGR00805       220 GPAFGYLLGSFCL  232 (633)
T ss_pred             hhHHHHHHHHHHH
Confidence            9999999988764

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.71  E-value=5.6e-08  Score=94.01  Aligned_cols=149  Identities=17%  Similarity=0.268  Sum_probs=109.2

Q ss_pred             hhhhhhhccc----hhH--HHHHHHHHHHHHHHHHhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHH
Q psy4795          83 WGAYISCALG----VSS--VGYVMICFGVVNAICSLLFGTLMKF-IGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFF  155 (285)
Q Consensus        83 t~~Y~~~~lg----~~~--~G~v~~~~gv~~~i~s~l~G~LsDr-iGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~  155 (285)
                      ...|+...++    +++  +--.+..++.---....++|+++|| +|+|+.++.|.++.+++.+.+....  ...+..++
T Consensus        44 L~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~--~~~~~gl~  121 (498)
T COG3104          44 LILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS--VSGPGGLY  121 (498)
T ss_pred             HHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc--cccccHHH
Confidence            4566665555    743  2244555555556778889999999 8999999999999999987765521  13456778


Q ss_pred             HHHHHHHHhhhhhhcccccceeeecccc---chhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH----HHHHHHHH
Q psy4795         156 TISGLWGVGDAVWQTQVNGLYGTLFRRN---KEAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGV----VLVTGFCG  228 (285)
Q Consensus       156 ~~~~l~Gig~g~~~~~~~ali~~~fp~~---~~~afs~~~l~~~lG~~ig~~~s~~l~~~~~l~il~~----~lv~~~v~  228 (285)
                      +..++.++|.|.+.+...+++++++|++   +..+|+++++.-|+|+.++..+.+++..+.-.-.-..    -...+.+-
T Consensus       122 i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~  201 (498)
T COG3104         122 IGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVI  201 (498)
T ss_pred             HHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence            8888889999999999999999999864   3789999999999999999988888765443332223    33444444


Q ss_pred             HHHHH
Q psy4795         229 YVIVE  233 (285)
Q Consensus       229 ~~~~e  233 (285)
                      |..-.
T Consensus       202 f~~~~  206 (498)
T COG3104         202 FLLGR  206 (498)
T ss_pred             HHHcc
Confidence            44444

>PRK10133 L-fucose transporter; Provisional

Probab=98.69  E-value=3.2e-06  Score=81.57  Aligned_cols=125  Identities=10%  Similarity=-0.061  Sum_probs=93.6

Q ss_pred             hhhhhh-hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q psy4795          82 LWGAYI-SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTIS  158 (285)
Q Consensus        82 ft~~Y~-~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~  158 (285)
                      |.+.|+ ++.+|.  ...|+.+..+.++..++++++|++.||+|||+++..+.++......... +.++   . ......
T Consensus       280 ~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~-~~~~---~-~~~~~~  354 (438)
T PRK10133        280 YLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISA-FAGG---H-VGLIAL  354 (438)
T ss_pred             HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HcCC---h-HHHHHH
Confidence            346664 566777  4688999999999999999999999999999998888776655443333 2331   1 224456


Q ss_pred             HHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795         159 GLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       159 ~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~  212 (285)
                      .++|++.+...|..++...+.+|++.+.+.++.. .+.+|..++..+.+.+...
T Consensus       355 ~l~glg~~~i~P~~~s~a~~~~~~~~~~as~l~~-~~~~g~~~~~~i~G~l~~~  407 (438)
T PRK10133        355 TLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDA  407 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccchhhccchhHHh-HHhccchHHHHHHHHHHHh
Confidence            7899999999999999999999887777777665 4556777776666666553

>TIGR00889 2A0110 nucleoside transporter

Probab=98.64  E-value=1.8e-07  Score=89.65  Aligned_cols=126  Identities=16%  Similarity=0.212  Sum_probs=80.7

Q ss_pred             hhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCC-hhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHH
Q psy4795          81 GLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGR-SPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTI  157 (285)
Q Consensus        81 ~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGr-k~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~  157 (285)
                      .+.+.|+++.+|+  +++|+++..++++..+++++.|+++||+|| |+++.++.+...+......+    .++++.+++.
T Consensus        23 ~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~   98 (418)
T TIGR00889        23 VTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQ----VTTPAGMFPV   98 (418)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH----hcCHHHHHHH
Confidence            3557788887777  689999999999999999999999999965 76777777666554444333    2345666666


Q ss_pred             HHHHHHhhhhhhcccccceeeeccc---cchhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         158 SGLWGVGDAVWQTQVNGLYGTLFRR---NKEAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       158 ~~l~Gig~g~~~~~~~ali~~~fp~---~~~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      ..+.|++.+...+..+++......+   |....+.-.|.+-++|.++|..+++.+.
T Consensus        99 ~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~lG~~ig~~l~g~l~  154 (418)
T TIGR00889        99 LLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGTIGFIAAMWAVSLLD  154 (418)
T ss_pred             HHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehhHHHHHHHHHHHHhc
Confidence            6677776554444444432211110   0011112224444678888888887763

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11462 putative transporter; Provisional

Probab=98.63  E-value=7.3e-07  Score=86.63  Aligned_cols=126  Identities=13%  Similarity=0.058  Sum_probs=95.8

Q ss_pred             hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcc----cCChhH-HHHHHHHHHHHHHHHHHhCCCCC-C-
Q psy4795          80 SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKF----IGRSPL-MALGFIVHCCLIWILVVWRPHPN-N-  150 (285)
Q Consensus        80 ~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDr----iGrk~~-i~~g~~l~~i~~~~l~~~~p~~~-~-  150 (285)
                      ..|...|+++.+|+  ..+|.++++.-+..++.-|+.|+++||    +||++. +++|.+...++..++ ++.|+.+ + 
T Consensus        29 ~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~ll-f~~p~~s~~~  107 (460)
T PRK11462         29 MLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLA-YSTPDLSMNG  107 (460)
T ss_pred             HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHH-HhCCCCCcch
Confidence            45778888899998  479999999999999999999999996    788655 556777777766443 3455322 1 


Q ss_pred             -hHHHHHHHHHHHHhhhhhhcccccceeeeccc--cchhHhHHHHHHHHHHHHHHHHHh
Q psy4795         151 -PKIFFTISGLWGVGDAVWQTQVNGLYGTLFRR--NKEAAFSNFRLWESVGFVIAYAYS  206 (285)
Q Consensus       151 -~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~--~~~~afs~~~l~~~lG~~ig~~~s  206 (285)
                       ...+++...++.++..+++.+..++.+++.++  ||....+......++|..++..+.
T Consensus       108 ~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~  166 (460)
T PRK11462        108 KMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLM  166 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             33455667788999999999999999998754  456777788888888776665553

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.62  E-value=4.7e-07  Score=85.25  Aligned_cols=127  Identities=16%  Similarity=0.194  Sum_probs=90.3

Q ss_pred             hhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q psy4795          81 GLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTIS  158 (285)
Q Consensus        81 ~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~  158 (285)
                      .|.|.|+++ +|.  .++|+++..+.+...+++++.|.++||+||++................+.. . .++++.+++..
T Consensus        25 p~l~~~l~~-~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~~~l~~~~  101 (382)
T TIGR00902        25 PFFPAWLKG-IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSA-G-AHNAWLLFIAI  101 (382)
T ss_pred             HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH-h-hhhHHHHHHHH
Confidence            455677754 566  689999999999999999999999999998544322221111111111111 1 35677777777


Q ss_pred             HHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         159 GLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       159 ~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      .+.|.+.+...+...++..+ .+++++.+++..+.+.++|.++|...++.+..
T Consensus       102 ~l~~~~~~~~~p~~~al~~~-~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~  153 (382)
T TIGR00902       102 GLFALFFSAGMPIGDALANT-WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIG  153 (382)
T ss_pred             HHHHHHHccchhHHHHHHHH-HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888877777777776543 45566899999999999999999998887754

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.61  E-value=5.9e-07  Score=84.93  Aligned_cols=129  Identities=12%  Similarity=0.098  Sum_probs=79.5

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHH-HHHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMA-LGFIVHCCLIWILVVWRPHPNNPKIFFTIS  158 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~-~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~  158 (285)
                      +.+.|+.+.+|.  .++|+......+...+.+++.|.++||+|||+.++ .+.+...++.....+    .++++.+++..
T Consensus        37 ~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~  112 (393)
T PRK15011         37 TLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACTLFAW----NRNYFVLLFVG  112 (393)
T ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHH
Confidence            456677777776  57888877666655555555555599999998754 444443333332222    23455554444


Q ss_pred             HHHHHhhhhhhcccccceeeecccc-ch--hHhHHHHHHHHHHHHHHHHHhhhhhH--HHH
Q psy4795         159 GLWGVGDAVWQTQVNGLYGTLFRRN-KE--AAFSNFRLWESVGFVIAYAYSTHLCA--RMK  214 (285)
Q Consensus       159 ~l~Gig~g~~~~~~~ali~~~fp~~-~~--~afs~~~l~~~lG~~ig~~~s~~l~~--~~~  214 (285)
                      .+.|...+...+...++..+..|++ +.  ...+..+...++|..+|..+++.+..  .|+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~  173 (393)
T PRK15011        113 VFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFT  173 (393)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChH
Confidence            4444444455666666666655443 22  22367888999999999999988753  444

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.57  E-value=4.6e-06  Score=79.08  Aligned_cols=136  Identities=15%  Similarity=0.085  Sum_probs=109.5

Q ss_pred             cCCCCcchHHHHhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCC
Q psy4795          68 PHPNNPKIFFTISGLWGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPH  147 (285)
Q Consensus        68 ~~~~~p~l~~~~~~ft~~Y~~~~lg~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~  147 (285)
                      ....++++......|.       +...+++++-.++-.+-.++++..|++.||+|+|+-+++|+.+.+++..+.+- .++
T Consensus        29 ~~l~diLip~l~~~f~-------ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~p-Aa~  100 (422)
T COG0738          29 TCLNDILIPHLKEVFD-------LTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWP-AAS  100 (422)
T ss_pred             hhcchhhHHHHHHHhC-------ccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh-hhh
Confidence            3345566665555443       33367889999999999999999999999999999999999998887655332 223


Q ss_pred             CCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         148 PNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       148 ~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      ..++..+....+++|.|-++.++..|.+++.+.|++. ..=.++.+-+..+|..+|+.+++.+-.
T Consensus       101 ~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         101 SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            4567778888899999999999999999999998765 666778888899999999999888766

>KOG0252|consensus

Probab=98.57  E-value=3.7e-07  Score=87.65  Aligned_cols=114  Identities=16%  Similarity=0.058  Sum_probs=79.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCC--C-CChHHHHHHHHHHHHhhhhhhc
Q psy4795          94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPH--P-NNPKIFFTISGLWGVGDAVWQT  170 (285)
Q Consensus        94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~--~-~~~~~~~~~~~l~Gig~g~~~~  170 (285)
                      ...+.+....-+++++|++++|++.||+|||+++...+++..++.+..-+...+  + .-.++++...+++|+|.|.=+|
T Consensus        84 ~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYP  163 (538)
T KOG0252|consen   84 GVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYP  163 (538)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCc
Confidence            345678888889999999999999999999999999988888877643332221  2 2346667779999999998887


Q ss_pred             ccccceeeeccccc-h----hHhHHHHHHHHHHHHHHHHHhh
Q psy4795         171 QVNGLYGTLFRRNK-E----AAFSNFRLWESVGFVIAYAYST  207 (285)
Q Consensus       171 ~~~ali~~~fp~~~-~----~afs~~~l~~~lG~~ig~~~s~  207 (285)
                      -..++.+|.-.+++ +    ..|++..+-.-.|..++..+..
T Consensus       164 lSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~  205 (538)
T KOG0252|consen  164 LSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSA  205 (538)
T ss_pred             chHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHH
Confidence            66666666544333 4    3455555555555555555443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.56  E-value=1.9e-06  Score=81.83  Aligned_cols=118  Identities=16%  Similarity=0.137  Sum_probs=98.7

Q ss_pred             hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhh
Q psy4795          89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDA  166 (285)
Q Consensus        89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g  166 (285)
                      +.+|+  .|.+++..+-.+...+.-+..|.+.||+|.|++..+++++..+-.+.+.+... .++++.++++..+.|++.|
T Consensus        42 ~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~-~~~~~~ll~~gll~G~~Ga  120 (417)
T COG2223          42 SDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVT-YPSTWQLLVIGLLLGLAGA  120 (417)
T ss_pred             cccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHcc-CCchHHHHHHHHHHhcccc
Confidence            56666  58899999999999999999999999999999999999887776666555444 4555888898999999887


Q ss_pred             hhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         167 VWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       167 ~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                      .+-. -.+.++..||+++ +.|.+++- +-|+|.++...+.+.+
T Consensus       121 sFav-~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v  162 (417)
T COG2223         121 SFAV-GMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLV  162 (417)
T ss_pred             eehc-ccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHH
Confidence            7654 5577888999888 99999999 9999999998887774

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.53  E-value=2e-05  Score=74.43  Aligned_cols=183  Identities=11%  Similarity=0.041  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHH-HHHHHHhcccCCCC--------cch-HH----------
Q psy4795          18 VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCC-LIWILVVWRPHPNN--------PKI-FF----------   77 (285)
Q Consensus        18 ~G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~-~l~~fl~~e~~~~~--------p~l-~~----------   77 (285)
                      .|.......++..+..+..+.+.+++|||..++...++.++ .++.+...+++|+.        +.. .+          
T Consensus       116 ~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~~~~~~~~~~~ll~~~~~~  195 (368)
T TIGR00903       116 ISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEGFGFKDAVKEFGALAGRKDLW  195 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcchHHHHHHHHHHHcChhHH
Confidence            34555666777778888888888889998665553333333 22223232211110        000 00          


Q ss_pred             --------------HHhhhhhhhhhhccchh-HHHHHHHHHHHHHHHHHhhhhhhhcccCCh---hHHHH-HHHHHHHHH
Q psy4795          78 --------------TISGLWGAYISCALGVS-SVGYVMICFGVVNAICSLLFGTLMKFIGRS---PLMAL-GFIVHCCLI  138 (285)
Q Consensus        78 --------------~~~~ft~~Y~~~~lg~~-~~G~v~~~~gv~~~i~s~l~G~LsDriGrk---~~i~~-g~~l~~i~~  138 (285)
                                    ....+.|.|+++ .|.+ ..+....+..+...++   .++++||..||   +.... ..++..+..
T Consensus       196 ~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~  271 (368)
T TIGR00903       196 IIGAILGFGVALFDNLAIWLEAALRP-AGLEDIAGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFF  271 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence                          001234888865 4553 2455554444444444   47788876653   33222 222222222


Q ss_pred             HHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795         139 WILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTH  208 (285)
Q Consensus       139 ~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~  208 (285)
                      ..+ ...   ++.+.......+.|++.....+..+++..|.+|++. +++.++.+...++|..++....+.
T Consensus       272 ~~~-~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~  338 (368)
T TIGR00903       272 LAL-AFE---LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAML  338 (368)
T ss_pred             HHH-HHc---cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHH
Confidence            121 111   122333444455566555565667788999999866 999999999999998777666543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG0569|consensus

Probab=98.52  E-value=1.7e-05  Score=77.53  Aligned_cols=112  Identities=16%  Similarity=0.159  Sum_probs=74.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHh--CCCCCChHH---HHHHHHHHHHhhhhh
Q psy4795          94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW--RPHPNNPKI---FFTISGLWGVGDAVW  168 (285)
Q Consensus        94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~--~p~~~~~~~---~~~~~~l~Gig~g~~  168 (285)
                      ..+-++....++.+.+.++++..+.||.||||+++.+..+..++.+.+...  ..+....|.   .+++.++..++.++-
T Consensus       305 ~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G  384 (485)
T KOG0569|consen  305 EEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIG  384 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcC
Confidence            345688899999999999999999999999999999988777665442211  111111222   234445555555555


Q ss_pred             hccc-ccceeeeccccc-hhHhHHHHHHHHHHHHHHHHH
Q psy4795         169 QTQV-NGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAY  205 (285)
Q Consensus       169 ~~~~-~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~  205 (285)
                      -+++ .-+.+|+||++. ..|.+.-.+.+.++..+--..
T Consensus       385 ~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~  423 (485)
T KOG0569|consen  385 PGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFA  423 (485)
T ss_pred             CCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence            4444 445578998765 888887777776665444333

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.51  E-value=3e-06  Score=83.07  Aligned_cols=128  Identities=12%  Similarity=0.174  Sum_probs=92.8

Q ss_pred             hhhhhhhhhc-cchhHHHHHHHHHHHHHHHHHhhhhhhhccc-----CChhH-HHHHHHHHHHHHHHHHHhCCCCCChHH
Q psy4795          81 GLWGAYISCA-LGVSSVGYVMICFGVVNAICSLLFGTLMKFI-----GRSPL-MALGFIVHCCLIWILVVWRPHPNNPKI  153 (285)
Q Consensus        81 ~ft~~Y~~~~-lg~~~~G~v~~~~gv~~~i~s~l~G~LsDri-----Grk~~-i~~g~~l~~i~~~~l~~~~p~~~~~~~  153 (285)
                      ...|.|.++. ...+++|.... .+... +..++.|.++||+     |||+. +..+.+...++...+.+..| .++.+.
T Consensus        33 ~~l~~~l~~~g~~~~~ig~~~~-~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~-~~~l~~  109 (491)
T PRK11010         33 GTLQAWMTVENIDLKTIGFFSL-VGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEP-GTQLRW  109 (491)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHH-HHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCC-cchHHH
Confidence            3345555543 33457776522 22222 6889999999999     99886 55666666666555544444 456777


Q ss_pred             HHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         154 FFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       154 ~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      +.+..++.|++.+...+...++..+.+|+++ +.+.++.....++|+.++......+..
T Consensus       110 l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~  168 (491)
T PRK11010        110 LAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLAD  168 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777888999999999999999999998554 889999999999999999877766544

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.45  E-value=3e-06  Score=85.98  Aligned_cols=128  Identities=17%  Similarity=0.116  Sum_probs=95.4

Q ss_pred             hhhhhhhccchh--HHHHHHHHHHHHHHHHHhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHHh-CCCC---CChHHHH
Q psy4795          83 WGAYISCALGVS--SVGYVMICFGVVNAICSLLFGTLMKF-IGRSPLMALGFIVHCCLIWILVVW-RPHP---NNPKIFF  155 (285)
Q Consensus        83 t~~Y~~~~lg~~--~~G~v~~~~gv~~~i~s~l~G~LsDr-iGrk~~i~~g~~l~~i~~~~l~~~-~p~~---~~~~~~~  155 (285)
                      ...|+++.+|.+  .+..+...+....-+.+.++|.++|+ +||++.+.++.++..++..++... .|..   ......+
T Consensus        10 LvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l   89 (654)
T TIGR00926        10 LVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDL   89 (654)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHH
Confidence            345666677773  33345555666667778889999995 999999999999888777655432 1111   1123456


Q ss_pred             HHHHHHHHhhhhhhcccccceeeecccc----chhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         156 TISGLWGVGDAVWQTQVNGLYGTLFRRN----KEAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       156 ~~~~l~Gig~g~~~~~~~ali~~~fp~~----~~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      +...+..+|.|...+...+..++.++++    +...|+.+++..|+|+.++..+.+++.
T Consensus        90 ~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~  148 (654)
T TIGR00926        90 LGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILR  148 (654)
T ss_pred             HHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677888999999999999999999642    367899999999999999988887775

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.44  E-value=4.8e-05  Score=74.83  Aligned_cols=112  Identities=11%  Similarity=0.025  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHHHHhhh----hhhhcccCChhHHHHHHHHHHHHHHHHHHhCC--C---CCChHHHHHHHHHHHHhhh
Q psy4795          96 VGYVMICFGVVNAICSLLF----GTLMKFIGRSPLMALGFIVHCCLIWILVVWRP--H---PNNPKIFFTISGLWGVGDA  166 (285)
Q Consensus        96 ~G~v~~~~gv~~~i~s~l~----G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p--~---~~~~~~~~~~~~l~Gig~g  166 (285)
                      .+++....++..++.+++.    +++.||.+..+.+.+|.++.++++..+.....  +   .-+.++.....+++|+|..
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            4456666776666776766    67777777778888999988888776543221  0   1135567777899999999


Q ss_pred             hhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhh
Q psy4795         167 VWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYST  207 (285)
Q Consensus       167 ~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~  207 (285)
                      +..|..++++.+..|++. +...+.+.+...+|..++-.+++
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~  439 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN  439 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999876 99999998888888877766653

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.44  E-value=1.7e-06  Score=77.75  Aligned_cols=151  Identities=12%  Similarity=0.064  Sum_probs=107.7

Q ss_pred             HHHhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCC---CCCh
Q psy4795          77 FTISGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPH---PNNP  151 (285)
Q Consensus        77 ~~~~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~---~~~~  151 (285)
                      |..+.|+|.. .+.+|+  ++...+...--++..+ +++.|.+.||+|++.++.+|.+...+++..+.....+   +.++
T Consensus        19 Y~Fs~yS~~L-k~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~   96 (250)
T PF06813_consen   19 YTFSAYSPQL-KSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPV   96 (250)
T ss_pred             cchhhhhHHH-HHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccch
Confidence            4445555533 346777  4566777777777765 6889999999999999999999999998765443221   2456


Q ss_pred             HHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHH
Q psy4795         152 KIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAY-STHLCARMKLYVMGVVLVTGFCGY  229 (285)
Q Consensus       152 ~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~-s~~l~~~~~l~il~~~lv~~~v~~  229 (285)
                      |...+...+.|.+.+.+++..-....+.||++||.+.++-+-...++.++-..+ ......+..-++++.......++.
T Consensus        97 ~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l  175 (250)
T PF06813_consen   97 WLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCL  175 (250)
T ss_pred             HHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence            777777777788888888887777789999999999999999999988776555 444444445555444444444443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.43  E-value=1.6e-06  Score=84.88  Aligned_cols=109  Identities=14%  Similarity=0.016  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHh-CCCCCChHHHHHHHHHHHHhhhhhhcccccceeeec
Q psy4795         102 CFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW-RPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLF  180 (285)
Q Consensus       102 ~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~-~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~f  180 (285)
                      ...++.+++.+++++++||+|||++++.+..+..++...+... .+.+.+... ....+...+......+..+.+..|.+
T Consensus       343 ~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~E~~  421 (502)
T TIGR00887       343 IALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFL-AIYVLAQFFANFGPNATTFIVPGEVF  421 (502)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHH-HHHHHHHHHHhcCCCchhhhhhhccC
Confidence            3445666788889999999999999988877666554433221 111111111 11111111222223445566678999


Q ss_pred             cccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         181 RRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       181 p~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      |++. +.+.++.+...++|..++....+.+..
T Consensus       422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~  453 (502)
T TIGR00887       422 PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQ  453 (502)
T ss_pred             chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhc
Confidence            9876 999999999999999999887776544

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG2533|consensus

Probab=98.42  E-value=3.6e-06  Score=82.70  Aligned_cols=55  Identities=15%  Similarity=0.128  Sum_probs=42.1

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcc----cCChhHHHHHHHHHHH
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKF----IGRSPLMALGFIVHCC  136 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDr----iGrk~~i~~g~~l~~i  136 (285)
                      |.|.|+++..|.  .++..+.+.+.++.+++.+++|.++||    ..++......+.+...
T Consensus       295 ~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~  355 (495)
T KOG2533|consen  295 WLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAI  355 (495)
T ss_pred             HHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            458888885556  467799999999999999999999999    5666665555544333

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.37  E-value=2.1e-06  Score=85.85  Aligned_cols=142  Identities=14%  Similarity=0.153  Sum_probs=97.4

Q ss_pred             hhhhccch-hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHh
Q psy4795          86 YISCALGV-SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVG  164 (285)
Q Consensus        86 Y~~~~lg~-~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig  164 (285)
                      +....+|- ....++.....+++.++.++.|+|+|.+|||..++.+.++..++.+....    .++...++....+.|+|
T Consensus        69 ~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at----A~~~~~~iag~~l~Gvg  144 (599)
T PF06609_consen   69 YINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT----AQNMNTFIAGMVLYGVG  144 (599)
T ss_pred             HHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc----CCcHHHHHHHHHHHHHh
Confidence            34445565 46678888899999999999999999999999999999998888876544    56778888889999999


Q ss_pred             hhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHHHH
Q psy4795         165 DAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL----CARMKLYVMGVVLVTGFCGYVIV  232 (285)
Q Consensus       165 ~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l----~~~~~l~il~~~lv~~~v~~~~~  232 (285)
                      .|.... ....++|+.|.+. ..+.+......-....++..++..+    ..||-.|+..+.-.++++...+.
T Consensus       145 aG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~f  216 (599)
T PF06609_consen  145 AGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFF  216 (599)
T ss_pred             hHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            766653 4566899997543 4444433332222222333443333    34566777666666666555444

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2532|consensus

Probab=98.33  E-value=2.1e-05  Score=76.93  Aligned_cols=204  Identities=11%  Similarity=0.104  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHhhhHhh-hCchHHHHHHHHHHHHHHHHHHhc-c---------------------------cCCCCcchH
Q psy4795          26 GVVNAICSLLFGTLMKF-IGRSPLMALGFIVHCCLIWILVVW-R---------------------------PHPNNPKIF   76 (285)
Q Consensus        26 gi~~~~~a~~~G~l~~~-~G~~~~~~~g~~~~~~~l~~fl~~-e---------------------------~~~~~p~l~   76 (285)
                      -+++.+.-++.|.|.+. .||+.++++-.++.++..++++.. .                           ++++.|+..
T Consensus       174 q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~  253 (466)
T KOG2532|consen  174 QLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKA  253 (466)
T ss_pred             HHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHH
Confidence            37777778889999999 999877776666665543333222 1                           001223322


Q ss_pred             HH---------------------Hhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCCh--------h
Q psy4795          77 FT---------------------ISGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRS--------P  125 (285)
Q Consensus        77 ~~---------------------~~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk--------~  125 (285)
                      ..                     +..|.|.|+.+.+|.  .+.|+...+--+.+.+..+++|.++||.-+|        |
T Consensus       254 i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rk  333 (466)
T KOG2532|consen  254 ILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRK  333 (466)
T ss_pred             HHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHH
Confidence            21                     123569999999887  6899999999999999999999999987552        2


Q ss_pred             HHH-HHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeee-ccccchhHhHHHHHHHHHHHHHHH
Q psy4795         126 LMA-LGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTL-FRRNKEAAFSNFRLWESVGFVIAY  203 (285)
Q Consensus       126 ~i~-~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~-fp~~~~~afs~~~l~~~lG~~ig~  203 (285)
                      ++- ++....+++++.+ -..+.++. +...+ ....+++....+..-....... -|+.-+...++.++.-++...++.
T Consensus       334 ifn~i~~~~~ai~l~~l-~~~~~~~~-~~a~~-~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P  410 (466)
T KOG2532|consen  334 IFNTIAFGGPAVFLLVL-AFTSDEHR-LLAVI-LLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAP  410 (466)
T ss_pred             HHHhHHHHHHHHHHHee-eecCCCcc-hHHHH-HHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence            221 2222233322222 22332232 22222 2222232222222222222223 555559999999999999999999


Q ss_pred             HHhhhhhH-----HHH--HHHHHHHHHHHHHHHHHH
Q psy4795         204 AYSTHLCA-----RMK--LYVMGVVLVTGFCGYVIV  232 (285)
Q Consensus       204 ~~s~~l~~-----~~~--l~il~~~lv~~~v~~~~~  232 (285)
                      .+-+.++.     +|+  ..+..++.+++.+.|.+.
T Consensus       411 ~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  411 LLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            99777762     344  334444455555444433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.30  E-value=3.3e-05  Score=75.08  Aligned_cols=159  Identities=13%  Similarity=0.093  Sum_probs=107.5

Q ss_pred             hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcc----cCChhH-HHHHHHHHHHHHHHHHHhCCC---CC
Q psy4795          80 SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKF----IGRSPL-MALGFIVHCCLIWILVVWRPH---PN  149 (285)
Q Consensus        80 ~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDr----iGrk~~-i~~g~~l~~i~~~~l~~~~p~---~~  149 (285)
                      ..|...|+++..|+  ..+|.+..+.=+..++.-|+.|.++||    +||++. ++.|.+...+... +.++.|+   ..
T Consensus        32 ~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~-l~F~~p~~~~~~  110 (467)
T COG2211          32 VLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAV-LLFITPDFSMTG  110 (467)
T ss_pred             HHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHH-HHHcCCCcccCc
Confidence            56778899999999  478999999999999999999999995    888555 5566666666554 4444553   23


Q ss_pred             ChHHHHHHHHHHHHhhhhhhcccccceeeeccc--cchhHhHHHHHHHHHHHHHHHHHh-hhhhH----H---HHHHHHH
Q psy4795         150 NPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRR--NKEAAFSNFRLWESVGFVIAYAYS-THLCA----R---MKLYVMG  219 (285)
Q Consensus       150 ~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~--~~~~afs~~~l~~~lG~~ig~~~s-~~l~~----~---~~l~il~  219 (285)
                      .....++...+++++-.+.+.|-.++.+++.++  ||.+..+......++|..+....- +....    +   -..+...
T Consensus       111 k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~  190 (467)
T COG2211         111 KLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTAL  190 (467)
T ss_pred             chHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence            456677778999999999999999999999754  556666666666677744443332 33221    1   1233344


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q psy4795         220 VVLVTGFCGYVIVEVRHMMK  239 (285)
Q Consensus       220 ~~lv~~~v~~~~~e~~~~~~  239 (285)
                      ++.+++.+.+.+..+..|++
T Consensus       191 ~~~vi~~i~~l~~~~~v~ER  210 (467)
T COG2211         191 VLGVIGVILLLFCFFNVKER  210 (467)
T ss_pred             HHHHHHHHHHHHHHHHhhcc
Confidence            44455555555554444433

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.29  E-value=0.00011  Score=70.53  Aligned_cols=128  Identities=13%  Similarity=0.082  Sum_probs=99.1

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHH----
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFF----  155 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~----  155 (285)
                      |.+.|+++.-|.  +..|..+.+..+.++..-...+++.+|+|.++++.++.+...+=+.......+   +.+...    
T Consensus       229 f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~---~~~~~~~~~~  305 (400)
T PF03825_consen  229 FFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD---PWPFIVALQL  305 (400)
T ss_pred             HHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC---CcHHHHHHHH
Confidence            346666665544  45778888888999999999999999999999999999887776655544322   222222    


Q ss_pred             HHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHH-HHHHHHHHHHHHhhhhhHH
Q psy4795         156 TISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRL-WESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       156 ~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l-~~~lG~~ig~~~s~~l~~~  212 (285)
                      ....+-|+.-|.+......++.+..|++. .++-+++.. ...+|.++|..+++.+..+
T Consensus       306 l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~  364 (400)
T PF03825_consen  306 LGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDA  364 (400)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            22356899999999999999999999877 889998776 4679999999999998765

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.28  E-value=0.00024  Score=69.45  Aligned_cols=114  Identities=10%  Similarity=0.051  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhh----hhhcc-cCChhHH--HHHHHHHHHHHHHHHH---hC--CCCCChHHHHHHHHHHHH
Q psy4795          96 VGYVMICFGVVNAICSLLFG----TLMKF-IGRSPLM--ALGFIVHCCLIWILVV---WR--PHPNNPKIFFTISGLWGV  163 (285)
Q Consensus        96 ~G~v~~~~gv~~~i~s~l~G----~LsDr-iGrk~~i--~~g~~l~~i~~~~l~~---~~--p~~~~~~~~~~~~~l~Gi  163 (285)
                      .++.....++.-++.+|+..    ++.|| .+++...  .+|.++..+++..+..   ..  +.+.++++.....+++|+
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            56788888888888888755    44554 3333433  6777777777655432   11  113477888888999999


Q ss_pred             hhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         164 GDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       164 g~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                      |+....+..++++.+..|++. +...+.+.+.+.+|..++..+++..
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~  440 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFG  440 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999875 9999999999999999998877654

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.22  E-value=2.2e-06  Score=82.19  Aligned_cols=128  Identities=14%  Similarity=0.206  Sum_probs=75.9

Q ss_pred             hhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhC--CC-CCChHHHH
Q psy4795          81 GLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWR--PH-PNNPKIFF  155 (285)
Q Consensus        81 ~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~--p~-~~~~~~~~  155 (285)
                      .|.+.|+++..|+  +++|.+..+..+...+.+|+.|.++||.|.||-.+.......+...+.+.+.  |- ..|.++- 
T Consensus        28 pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg-  106 (412)
T PF01306_consen   28 PFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLG-  106 (412)
T ss_dssp             HHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHH-
T ss_pred             HHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            4668889887777  6899999999999999999999999999976654433332222222222211  10 1121111 


Q ss_pred             HHHHHHHHhhhhhhcccccce---eeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         156 TISGLWGVGDAVWQTQVNGLY---GTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       156 ~~~~l~Gig~g~~~~~~~ali---~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                        ..+-|+..+....+.....   .+-..++.+--++=-|+|-++|.+++..+++.+..
T Consensus       107 --~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~  163 (412)
T PF01306_consen  107 --AIIGGIYLGLVFNAGVPLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFN  163 (412)
T ss_dssp             --HHHTTTTTTTTTTTHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeee
Confidence              1111222232222222222   12222333677889999999999999999988754

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.20  E-value=9.1e-05  Score=71.16  Aligned_cols=126  Identities=17%  Similarity=0.185  Sum_probs=102.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcc
Q psy4795          92 GVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQ  171 (285)
Q Consensus        92 g~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~  171 (285)
                      |-+..|+.....-+.+++.-.+..++.+|+|.|+.++++..+..+=+....+    .++++.+.+.-.+-|+-.++.-..
T Consensus       257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~----~~~~~~i~~~klLH~~e~~l~lva  332 (412)
T PF01306_consen  257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGF----ATNPWVISLIKLLHALEFPLLLVA  332 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT------SHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhh----hcchHHHHHHHHHHHHHHHHHHHH
Confidence            3356889999999999999999999999999999999988877766655444    456788888899999999999999


Q ss_pred             cccceeeeccccc-hhHhHH-HHHHHHHHHHHHHHHhhhhhHHHH---HHHHHHH
Q psy4795         172 VNGLYGTLFRRNK-EAAFSN-FRLWESVGFVIAYAYSTHLCARMK---LYVMGVV  221 (285)
Q Consensus       172 ~~ali~~~fp~~~-~~afs~-~~l~~~lG~~ig~~~s~~l~~~~~---l~il~~~  221 (285)
                      ..-++.+.+|++. .+...+ +++...+|..+....++.++.+..   .|..++.
T Consensus       333 ~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~  387 (412)
T PF01306_consen  333 AFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGL  387 (412)
T ss_dssp             HHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHH
Confidence            9999999999887 788886 689999999999999999988763   4544443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG4686|consensus

Probab=98.20  E-value=9.8e-06  Score=74.01  Aligned_cols=120  Identities=14%  Similarity=0.169  Sum_probs=88.8

Q ss_pred             hhhhhhccchh--HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHH-HHHHHHhCCCCCChHHHHHHHHH
Q psy4795          84 GAYISCALGVS--SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCL-IWILVVWRPHPNNPKIFFTISGL  160 (285)
Q Consensus        84 ~~Y~~~~lg~~--~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~-~~~l~~~~p~~~~~~~~~~~~~l  160 (285)
                      |.++++..|++  ..+-+....-....+.+|++|.++||.||+...+....+..+. =..+.+..   .++   ++...+
T Consensus       288 ~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~---lsP---y~~m~~  361 (459)
T KOG4686|consen  288 PMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF---LSP---YTSMTF  361 (459)
T ss_pred             HHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh---ccH---HHHHHH
Confidence            77788889984  4556666666777899999999999999998877666543332 22222211   112   445566


Q ss_pred             HHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         161 WGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       161 ~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                      +|+..++.--..-..++.+.|+++ +++++..+-.||+|.++...+.+.+
T Consensus       362 lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i  411 (459)
T KOG4686|consen  362 LGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFI  411 (459)
T ss_pred             HhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhee
Confidence            787777766666778888999988 9999999999999999998887765

>KOG2325|consensus

Probab=98.19  E-value=5.5e-06  Score=80.73  Aligned_cols=114  Identities=16%  Similarity=0.220  Sum_probs=84.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhcccCC-hhHHHHHHHHHHHHHHH--HHHhCCCCCChHHHHHHHHHHHHhhhhhhc
Q psy4795          94 SSVGYVMICFGVVNAICSLLFGTLMKFIGR-SPLMALGFIVHCCLIWI--LVVWRPHPNNPKIFFTISGLWGVGDAVWQT  170 (285)
Q Consensus        94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGr-k~~i~~g~~l~~i~~~~--l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~  170 (285)
                      +.-|++.....++.++.++++|..+.|.++ |+.++.|.++++++-++  .+-..|+ +..++..++.++.|+|.|....
T Consensus        71 ~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~-~~~y~mL~~R~l~Gvg~~n~a~  149 (488)
T KOG2325|consen   71 TFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPN-GVKYLMLVARILTGVGVGNFAV  149 (488)
T ss_pred             chhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhccc-chHHHHHHHHHHcCcCcccHHH
Confidence            568899999999999999999999999885 55566666666655433  3333443 3678888889999999876643


Q ss_pred             ccccceee-eccccchhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         171 QVNGLYGT-LFRRNKEAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       171 ~~~ali~~-~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                       +-+++++ ..+++|.+|++.....+.+|..+|+.++..+
T Consensus       150 -lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f  188 (488)
T KOG2325|consen  150 -LRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF  188 (488)
T ss_pred             -HHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence             4455555 4678888888888877777777777666553

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.18  E-value=2.6e-05  Score=73.43  Aligned_cols=125  Identities=12%  Similarity=0.045  Sum_probs=69.5

Q ss_pred             hhhhhhhhhhccch--hHHHHH--HHHHHHHHHHHHhhhhh-hhcccCChhHHHHHHHHH-HHHHHHHHHhCCCCCChHH
Q psy4795          80 SGLWGAYISCALGV--SSVGYV--MICFGVVNAICSLLFGT-LMKFIGRSPLMALGFIVH-CCLIWILVVWRPHPNNPKI  153 (285)
Q Consensus        80 ~~ft~~Y~~~~lg~--~~~G~v--~~~~gv~~~i~s~l~G~-LsDriGrk~~i~~g~~l~-~i~~~~l~~~~p~~~~~~~  153 (285)
                      ..+.|.|+++. |.  +++|+.  +....+...+.+|+.++ .+||.||||..++...+. ..+...+....+...+..+
T Consensus        21 ~p~lp~~l~~~-g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (390)
T TIGR02718        21 MDALPTLLRED-GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGW   99 (390)
T ss_pred             HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHH
Confidence            44567787664 55  688875  45668888888988854 799999999976655332 2222222222332222233


Q ss_pred             HHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHH
Q psy4795         154 FFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAY  205 (285)
Q Consensus       154 ~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~  205 (285)
                      ......+.++..+...+...++..+..++++ +...+.......+|..+|...
T Consensus       100 ~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~  152 (390)
T TIGR02718       100 AVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAG  152 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3333444445555555555556555554433 444444444445555555543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.15  E-value=0.0013  Score=62.78  Aligned_cols=127  Identities=16%  Similarity=0.206  Sum_probs=105.6

Q ss_pred             hhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhc-ccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q psy4795          86 YISCALGV--SSVGYVMICFGVVNAICSLLFGTLMK-FIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWG  162 (285)
Q Consensus        86 Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsD-riGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~G  162 (285)
                      |--+.+|+  .++--.....+.+..++-.+.|++.. |.++++...+|......++..+....+ .++.+.+....+++|
T Consensus       234 ygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~-~~~~~~~~~~~~l~G  312 (403)
T PF03209_consen  234 YGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGP-LGSPWLFRPGVFLLG  312 (403)
T ss_pred             chhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHh-cccchHHHHHHHHHH
Confidence            44455676  57778888899999999989998765 799999999999988888877666655 345788888899999


Q ss_pred             Hhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy4795         163 VGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARM  213 (285)
Q Consensus       163 ig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~  213 (285)
                      ++.|++....-+..+++.++++ +...+.+...|+++..+|.+.++.+-+-.
T Consensus       313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~  364 (403)
T PF03209_consen  313 LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLV  364 (403)
T ss_pred             HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999997776 99999999999999999999988765433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.10  E-value=2.2e-05  Score=75.27  Aligned_cols=116  Identities=16%  Similarity=0.309  Sum_probs=80.8

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCC-hhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGR-SPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTIS  158 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGr-k~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~  158 (285)
                      |.+.|+++ .|.  .++|.++...++..++++++.|.++||.++ |+++.+..++.++.......    .++++.++.+.
T Consensus        24 ~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~----~~~f~~~~~~~   98 (400)
T PF03825_consen   24 YLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF----SSSFWWLFVIM   98 (400)
T ss_pred             HHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH----hccHHHHHHHH
Confidence            45667665 445  699999999999999999999999999764 56655554544443323222    33456666666


Q ss_pred             HHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHH
Q psy4795         159 GLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAY  203 (285)
Q Consensus       159 ~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~  203 (285)
                      .+..+......+..+++..+..+ +++.-++-.|+|-++|..++.
T Consensus        99 ~l~~~~~~p~~pl~dsi~~~~~~-~~~~~YG~iRlwGSiGf~~~~  142 (400)
T PF03825_consen   99 LLFSFFFSPTMPLSDSIALSYLG-DRGKDYGRIRLWGSIGFIVAA  142 (400)
T ss_pred             HHHHHHHccHHHHHHHHHHHHcc-cccCCCCcchhhhhHHHHHHH
Confidence            66666655555555565555553 456888999999999998883

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.02  E-value=0.0012  Score=63.24  Aligned_cols=110  Identities=9%  Similarity=-0.008  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccc
Q psy4795          96 VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGL  175 (285)
Q Consensus        96 ~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~al  175 (285)
                      .+..+..+-.+..++.+++|++.||+++|+++.+..+...++.+.... .+  +  ........+.|++.+...|..++.
T Consensus       271 a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~-~~--~--~~~~~~l~~~glf~s~~fp~i~sl  345 (410)
T TIGR00885       271 AANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIF-AG--G--HVGLYCLTLCSAFMSLMFPTIYGI  345 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-cC--C--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555778899999999999999999888777766665544443 22  2  123455667778777777999999


Q ss_pred             eeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         176 YGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       176 i~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      ..+..+++..++.+..-+.- +|.++.+.+-+.+..
T Consensus       346 ~~~~~g~~~~~~s~~l~~~~-~Gga~~p~l~G~~~d  380 (410)
T TIGR00885       346 ALKGLGQDTKYGAAGLVMAI-IGGGIVPPLQGFIID  380 (410)
T ss_pred             HHhhhhhhhhhhHHHHHHHH-hccchHHHHHHHHHH
Confidence            99999887755555444443 888888888878776

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00788 fbt folate/biopterin transporter

Probab=97.96  E-value=0.00014  Score=70.92  Aligned_cols=128  Identities=14%  Similarity=0.105  Sum_probs=88.9

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccC-----ChhHHHHHHHHHHHHHHHHHHhCCCCCChHHH
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIG-----RSPLMALGFIVHCCLIWILVVWRPHPNNPKIF  154 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriG-----rk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~  154 (285)
                      -.+.++.+.+|+  .+++.......+.+.+-.+ .|.++||++     ||+.++++.++.. +...... .+.+++....
T Consensus        47 ~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~-~~~~~~l-~~~~~~~~~~  123 (468)
T TIGR00788        47 PLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGS-AILYGLL-PGKVSSAKVA  123 (468)
T ss_pred             hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHH-HHHHHhc-ccccchHHHH
Confidence            345566777787  5787788888888888555 999999998     7888888776653 1211222 2223333444


Q ss_pred             HHHHHHHHHhhhhhhcccccceeeeccccchh---HhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795         155 FTISGLWGVGDAVWQTQVNGLYGTLFRRNKEA---AFSNFRLWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       155 ~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~---afs~~~l~~~lG~~ig~~~s~~l~~~  212 (285)
                      .+..++.+++.+.......+++.|..+++++.   ..+.....+++|..+|..+++.+..+
T Consensus       124 ~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~  184 (468)
T TIGR00788       124 AAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK  184 (468)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44677888999999999999999998844333   33344455679999999998887654

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG2504|consensus

Probab=97.95  E-value=3.2e-05  Score=76.40  Aligned_cols=113  Identities=17%  Similarity=0.112  Sum_probs=93.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHH-HHHHHHHHHhhhhhhccc
Q psy4795          94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIF-FTISGLWGVGDAVWQTQV  172 (285)
Q Consensus        94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~-~~~~~l~Gig~g~~~~~~  172 (285)
                      ++++++..+...+..+.+|+.+.+.||+|.|++++.|.++..++++...+.    .+.|.+ +...++.|+|.|+...+.
T Consensus        81 ~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~----~~i~~l~lt~gvi~G~G~~~~~~pa  156 (509)
T KOG2504|consen   81 SQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFA----TSLWQLYLTFGVIGGLGLGLIYLPA  156 (509)
T ss_pred             cHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHhhccchhhhcch
Confidence            468899999999999999999999999999999999999999999887663    345554 455778899999999999


Q ss_pred             ccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         173 NGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       173 ~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      ..+++..|+++|+.|.++-..-..+|.++-..+..++.
T Consensus       157 iviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~  194 (509)
T KOG2504|consen  157 VVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLL  194 (509)
T ss_pred             hhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHH
Confidence            99999999999988888877777776666655555543

>KOG0253|consensus

Probab=97.88  E-value=3.3e-05  Score=72.84  Aligned_cols=141  Identities=16%  Similarity=0.175  Sum_probs=99.8

Q ss_pred             hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhh
Q psy4795          88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGD  165 (285)
Q Consensus        88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~  165 (285)
                      ++.-|+  .+..++..+.-.++.+++...|.++|++|||+...+..+...+.-..    .-.++++..+.+...++|+|.
T Consensus       105 ~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~i----s~~spnf~~L~~f~~l~~~g~  180 (528)
T KOG0253|consen  105 DEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVI----SGASPNFASLCVFRALWGFGV  180 (528)
T ss_pred             HhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHh----hcCCCCeehhhHHHHHHhccC
Confidence            344455  35667888888999999999999999999999888777765554332    222456677777789999999


Q ss_pred             hhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4795         166 AVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYS----THLCARMKLYVMGVVLVTGFCGYVIVE  233 (285)
Q Consensus       166 g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s----~~l~~~~~l~il~~~lv~~~v~~~~~e  233 (285)
                      |. .|+..+++.+.-|...+.--++...+..+|.++.-.++    ..+..+|.+....+-+.+..+.+.|+.
T Consensus       181 gg-~pv~~~~yle~lp~~~r~~~~V~~~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~  251 (528)
T KOG0253|consen  181 GG-LPVDSAIYLEFLPSSHRWLLTVMSFFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVY  251 (528)
T ss_pred             CC-ccHhHHHHHHhccCcCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcc
Confidence            88 88899999998876553333433366677776654443    445666766666666666666666664

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.86  E-value=0.00075  Score=58.26  Aligned_cols=117  Identities=20%  Similarity=0.262  Sum_probs=87.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795          94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN  173 (285)
Q Consensus        94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~  173 (285)
                      ...++.+..+.+...+++++.|+++||.|||+.+..+......+.+...+ .++ .+.+...+.....|++.+...+...
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~g~~~~~~~~~~~  116 (338)
T COG0477          39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLAL-APN-VGLALLLILRLLQGLGGGGLLPVAS  116 (338)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHh-Ccc-chHHHHHHHHHHHHhhhHHHHHHHH
Confidence            35778888899999999999999999999998888777653333222222 221 3456666667778999999999999


Q ss_pred             cceeeeccc--cchhHhHHHHH-HHHHHHHHHHHHhhhhhHH
Q psy4795         174 GLYGTLFRR--NKEAAFSNFRL-WESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       174 ali~~~fp~--~~~~afs~~~l-~~~lG~~ig~~~s~~l~~~  212 (285)
                      +++.+.+|+  +++...+.... ..++|..++..+++.+...
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477         117 ALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999986  55777777777 6788888888776665543

>KOG3764|consensus

Probab=97.81  E-value=8.4e-05  Score=70.59  Aligned_cols=217  Identities=15%  Similarity=0.105  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhhhCch-HHHHHHHHHHHHHHHHHHhcccCCCCc--------chHHHHh------hh
Q psy4795          18 VGYVMICFGVVNAICSLLFGTLMKFIGRS-PLMALGFIVHCCLIWILVVWRPHPNNP--------KIFFTIS------GL   82 (285)
Q Consensus        18 ~G~il~~~gi~~~~~a~~~G~l~~~~G~~-~~~~~g~~~~~~~l~~fl~~e~~~~~p--------~l~~~~~------~f   82 (285)
                      .|.++-..+++..++.+.-|-+=+..|.+ |.++++++.-+-..+-++..||+..++        +.-.+.-      .+
T Consensus       198 mGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~~~~~~~~~~Ll~dP~I~~~ag  277 (464)
T KOG3764|consen  198 MGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPDSTEQGTPMWSLLMDPYILLIAG  277 (464)
T ss_pred             HHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCccccccCccHHHHHhCchHhhhhc
Confidence            57777788888888888888888888886 444454444433555566667654444        1111110      00


Q ss_pred             -------h--------hhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccC--ChhHHHHHHHHHHHHHHHHHH
Q psy4795          83 -------W--------GAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIG--RSPLMALGFIVHCCLIWILVV  143 (285)
Q Consensus        83 -------t--------~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriG--rk~~i~~g~~l~~i~~~~l~~  143 (285)
                             .        +.|..+.+..  .+.|.+-....+...++..++|.++||++  |......+.+....+..+..+
T Consensus       278 ai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~  357 (464)
T KOG3764|consen  278 AITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPF  357 (464)
T ss_pred             chhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHh
Confidence                   0        2333333443  25777777788899999999999999999  655555555544433333222


Q ss_pred             hCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccc---c---c-hhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy4795         144 WRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRR---N---K-EAAFSNFRLWESVGFVIAYAYSTHLCARMKLY  216 (285)
Q Consensus       144 ~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~---~---~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~~l~  216 (285)
                          .+++.-..+-...+|++.+...+..-..++.+...   +   . +..+++.....++|+++|..+++.+-..+-..
T Consensus       358 ----~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~  433 (464)
T KOG3764|consen  358 ----ATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFE  433 (464)
T ss_pred             ----hhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHH
Confidence                23344444445555555555555554444444432   2   3 56666777777777777777777765444333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy4795         217 VMGVVLVTGFCGYVIVEVRHMM  238 (285)
Q Consensus       217 il~~~lv~~~v~~~~~e~~~~~  238 (285)
                      .+....-+.-+.|.-+-...|+
T Consensus       434 wl~~iig~~n~iyapvl~ll~~  455 (464)
T KOG3764|consen  434 WLMTIIGILNLIYAPVLLLLRI  455 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333334444433333

>KOG2533|consensus

Probab=97.79  E-value=8.3e-05  Score=73.17  Aligned_cols=116  Identities=13%  Similarity=0.060  Sum_probs=92.3

Q ss_pred             hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhh
Q psy4795          89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDA  166 (285)
Q Consensus        89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g  166 (285)
                      ..+++  .+-+.+..++-++.+++.+.+|.|.||++-.+.+....+...+..++...    -.+.+.+.+..+++|+..+
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~----~~s~~~~ialr~llGl~es  149 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA----VHSFPGLIALRFLLGLFES  149 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHhc
Confidence            34455  57888999999999999999999999999655555444444333322222    2467888888999999999


Q ss_pred             hhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795         167 VWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTH  208 (285)
Q Consensus       167 ~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~  208 (285)
                      ...|....+++..|.+++ +.-+++++...++|..+|-.+++.
T Consensus       150 ~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g  192 (495)
T KOG2533|consen  150 GGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYG  192 (495)
T ss_pred             ccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHH
Confidence            999999999999997655 999999999999999999888766

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.78  E-value=0.0017  Score=61.01  Aligned_cols=113  Identities=15%  Similarity=0.108  Sum_probs=80.4

Q ss_pred             hhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHh
Q psy4795          85 AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVG  164 (285)
Q Consensus        85 ~Y~~~~lg~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig  164 (285)
                      .|-+..+..++++.+..+--+..++.+++.|.++||+|||+..+.-.+++.++.+...     .++++.+++..++-|++
T Consensus        60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~-----~~~~~~L~~GRvlgGia  134 (354)
T PF05631_consen   60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH-----SSNYPVLLLGRVLGGIA  134 (354)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHH
Confidence            3433334447888888888888899999999999999999998888888777664321     45678888989999999


Q ss_pred             hhhhhcccccceee-----eccccc-hhHhHHHHHHHHHHHHHH
Q psy4795         165 DAVWQTQVNGLYGT-----LFRRNK-EAAFSNFRLWESVGFVIA  202 (285)
Q Consensus       165 ~g~~~~~~~ali~~-----~fp~~~-~~afs~~~l~~~lG~~ig  202 (285)
                      .++..+..-+-+..     -+|++. +..|+...++.|-..+|+
T Consensus       135 TSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~  178 (354)
T PF05631_consen  135 TSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIG  178 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHH
Confidence            99988877665532     245554 566665554444433333

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.73  E-value=0.00088  Score=63.91  Aligned_cols=110  Identities=15%  Similarity=0.109  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHhhhhhhhcccC-----Chh-HHHHHHHHHHHHHHH--HH-HhCCC-------CCChH--HHHHHHHHH
Q psy4795         100 MICFGVVNAICSLLFGTLMKFIG-----RSP-LMALGFIVHCCLIWI--LV-VWRPH-------PNNPK--IFFTISGLW  161 (285)
Q Consensus       100 ~~~~gv~~~i~s~l~G~LsDriG-----rk~-~i~~g~~l~~i~~~~--l~-~~~p~-------~~~~~--~~~~~~~l~  161 (285)
                      +....-.-....+..|+.||+-+     ||. -+..|..+...+...  .. .+...       +...+  ...+...++
T Consensus        20 lval~~~~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~   99 (403)
T PF03209_consen   20 LVALHYLVAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLY   99 (403)
T ss_pred             HHHHHHHHHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHH
Confidence            34444455567889999999977     554 466777776654332  11 11221       11122  345667789


Q ss_pred             HHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         162 GVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       162 Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                      |+|.+..+|+..+++.|..|+++ +.+-++-..+.-+|+.++....+.+
T Consensus       100 G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~l  148 (403)
T PF03209_consen  100 GLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRL  148 (403)
T ss_pred             HhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999997755 9999999999999999998886654

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG3762|consensus

Probab=97.73  E-value=0.00017  Score=70.84  Aligned_cols=141  Identities=14%  Similarity=0.148  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccc
Q psy4795          96 VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGL  175 (285)
Q Consensus        96 ~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~al  175 (285)
                      -|.+....-.+++..=++++++..|+|+-+++.+|+....+=++.+..    -+|+|++..+-.+-|+..+.....+.++
T Consensus       408 fGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~----L~n~W~vLPieilqgit~aliWaa~~sY  483 (618)
T KOG3762|consen  408 FGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSY----LQNPWMVLPIEILQGITHALIWAAIISY  483 (618)
T ss_pred             eeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHH----hcCchheeeHHHHHHHHHHHHHHHHHHH
Confidence            455566666788888899999999999999999998887776665444    2466999999999999999999999999


Q ss_pred             eeeeccccc-hhHhHHHHH-----HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy4795         176 YGTLFRRNK-EAAFSNFRL-----WESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKA  240 (285)
Q Consensus       176 i~~~fp~~~-~~afs~~~l-----~~~lG~~ig~~~s~~l~~~~~l~il~~~lv~~~v~~~~~e~~~~~~~  240 (285)
                      +....|++- .++-++.+.     -.++|+.||-..-..+..++...+..+.+++.++.++.+.++.++++
T Consensus       484 ~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~l~~~~  554 (618)
T KOG3762|consen  484 ASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLLLKRRG  554 (618)
T ss_pred             HHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence            999998876 666664443     33455555555544566666677777777777777777776655443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.73  E-value=0.0016  Score=63.95  Aligned_cols=90  Identities=19%  Similarity=0.166  Sum_probs=62.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795          94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN  173 (285)
Q Consensus        94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~  173 (285)
                      +..++...+..+..++.+|+-|.++|+-|+||.++....+.....-..+.+. ++++++...+...+--++.+..+...|
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v-~~~~~~~~~~l~iia~v~~~~~~vfyn  148 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFV-SPGQWWLALVLFIIANVGYEASNVFYN  148 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456888899999999999999999999998888776655444333333333 244445544544454567777788889


Q ss_pred             cceeeeccccc
Q psy4795         174 GLYGTLFRRNK  184 (285)
Q Consensus       174 ali~~~fp~~~  184 (285)
                      +++.++.+++.
T Consensus       149 a~LP~la~~~~  159 (477)
T PF11700_consen  149 AYLPDLARPEP  159 (477)
T ss_pred             HHhHhhcCCCh
Confidence            99999875543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.73  E-value=0.0063  Score=57.44  Aligned_cols=183  Identities=15%  Similarity=0.181  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHHhhhHhhh-CchHHHHHHHHHHHHHHHHHHh--ccc-CCC--------------------------C
Q psy4795          23 ICFGVVNAICSLLFGTLMKFI-GRSPLMALGFIVHCCLIWILVV--WRP-HPN--------------------------N   72 (285)
Q Consensus        23 ~~~gi~~~~~a~~~G~l~~~~-G~~~~~~~g~~~~~~~l~~fl~--~e~-~~~--------------------------~   72 (285)
                      .+.+++.++.+-++-.++++. ||+.-+...+...++.+++.+-  +++ +++                          |
T Consensus       141 ~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~~~~~~~~~~~~~~vw~~~~aW~vtLfmGlq  220 (395)
T COG2807         141 TSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALREQAASIATKLVSVRKVWRSPLAWQVTLFMGLQ  220 (395)
T ss_pred             HHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccCchhHHHHHHHHhh
Confidence            444555555666666677777 5765544444444443222211  111 011                          1


Q ss_pred             cchHHHHhhhhh-hhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy4795          73 PKIFFTISGLWG-AYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKF-IGRSPLMALGFIVHCCLIWILVVWRPHPNN  150 (285)
Q Consensus        73 p~l~~~~~~ft~-~Y~~~~lg~~~~G~v~~~~gv~~~i~s~l~G~LsDr-iGrk~~i~~g~~l~~i~~~~l~~~~p~~~~  150 (285)
                      ..++|....+.| .|.++.++-.+.|.......+.+...++..-.+.+| -++|+..+....++.++...+.+ .| .+.
T Consensus       221 S~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~-~P-~~~  298 (395)
T COG2807         221 SLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLL-AP-GQL  298 (395)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH-hh-hhH
Confidence            133344333334 444455666789999999999999999988888885 56677777777778887776654 44 233


Q ss_pred             hHHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHH---HHHHhhhhhH
Q psy4795         151 PKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVI---AYAYSTHLCA  211 (285)
Q Consensus       151 ~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~i---g~~~s~~l~~  211 (285)
                      +++.   .+++|+|.|...+-.-.++.+-. +|-.++-++..+.|.+|+.+   |+.+.+.+..
T Consensus       299 ~~lw---~~llG~G~G~~F~laL~li~~rs-~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhD  358 (395)
T COG2807         299 PILW---ALLLGLGQGGAFPLALTLILLRS-SDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHD  358 (395)
T ss_pred             HHHH---HHHHhCccchHHHHHHHHHHhhc-CChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHH
Confidence            2222   47789888777766555555544 23367788999999999955   4555555544

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.72  E-value=8.3e-05  Score=71.03  Aligned_cols=131  Identities=15%  Similarity=0.139  Sum_probs=94.1

Q ss_pred             cchHHHHhhhhhhhhhhccch---------hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHH
Q psy4795          73 PKIFFTISGLWGAYISCALGV---------SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVV  143 (285)
Q Consensus        73 p~l~~~~~~ft~~Y~~~~lg~---------~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~  143 (285)
                      |+-.-..+.+-|.|+++..+.         +..|+...+.++..++-+|+-|.++|+.|+||....-.....+.....++
T Consensus        28 p~~~ivtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~  107 (438)
T COG2270          28 PFFAIVTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLW  107 (438)
T ss_pred             ceeeeeeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHH
Confidence            333333445557787776554         56889999999999999999999999999988877666655555555666


Q ss_pred             hCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHH
Q psy4795         144 WRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAY  203 (285)
Q Consensus       144 ~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~  203 (285)
                      +.|+.++++...+...+..++....+...++++.+..++++ +...+.-.-.-.+|+.+-.
T Consensus       108 ~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~l  168 (438)
T COG2270         108 FIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILL  168 (438)
T ss_pred             HhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchHHH
Confidence            66644566666777888889999999999999999988765 5554433333344444433

>PTZ00207 hypothetical protein; Provisional

Probab=97.59  E-value=0.00035  Score=70.22  Aligned_cols=139  Identities=11%  Similarity=0.084  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhc---------ccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhh
Q psy4795          99 VMICFGVVNAICSLLFGTLMK---------FIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQ  169 (285)
Q Consensus        99 v~~~~gv~~~i~s~l~G~LsD---------riGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~  169 (285)
                      ....+++++.+|-+..|.++.         |+.|.-.+.+..+ ..++.+++++..|.    ..+++..++.|++.|...
T Consensus       396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~----~~L~~~~~lvg~~~G~~~  470 (591)
T PTZ00207        396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPK----AALPLPYFIAAFANGFMA  470 (591)
T ss_pred             ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCc----cHhHHHHHHHHHHhhHhH
Confidence            568889999999999998872         2333333334444 44445555554441    356777889999999999


Q ss_pred             cccccceeeeccccchhHhHHHHHHHHHHHHHH--HHHh----------------hhhhHHHHHHHHHHHHHHHHHHHHH
Q psy4795         170 TQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIA--YAYS----------------THLCARMKLYVMGVVLVTGFCGYVI  231 (285)
Q Consensus       170 ~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig--~~~s----------------~~l~~~~~l~il~~~lv~~~v~~~~  231 (285)
                      +.......++|.++.+.-+..-.+..-+|+.+-  ..++                +.-|.+..+.++.++.+++++.=.+
T Consensus       471 ~~~~~i~selFgk~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~  550 (591)
T PTZ00207        471 ATIALVTRTIFAKDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTY  550 (591)
T ss_pred             HHHHHHHHHHhccchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhh
Confidence            999999999998554777666666666666542  3333                1135566688888999999998888


Q ss_pred             HHHHHHHhHHh
Q psy4795         232 VEVRHMMKARR  242 (285)
Q Consensus       232 ~e~~~~~~~~~  242 (285)
                      +.+|+||--||
T Consensus       551 l~~R~r~~y~~  561 (591)
T PTZ00207        551 VHLQYRRLCLK  561 (591)
T ss_pred             eeeehHHHHHH
Confidence            88888765544

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.58  E-value=0.0013  Score=61.95  Aligned_cols=139  Identities=17%  Similarity=0.136  Sum_probs=109.9

Q ss_pred             hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhh
Q psy4795          89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDA  166 (285)
Q Consensus        89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g  166 (285)
                      +.+|+  +.+|+..+.-.++..+.+|+..++++|+|.++.+..++++..++...    .+ ..+.+..+....+.|.|.+
T Consensus        40 ~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~i----R~-~~~~~~L~~gt~l~G~gIa  114 (395)
T COG2807          40 QDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILI----RS-LGGLPLLFLGTLLAGAGIA  114 (395)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHH----Hh-cccHHHHHHHHHHHHhhHH
Confidence            44566  57889999999999999999999999999999999998887776654    22 1245677888889999999


Q ss_pred             hhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHH---HH--HHHHHHHHHHHHHHHHHH
Q psy4795         167 VWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR---MK--LYVMGVVLVTGFCGYVIV  232 (285)
Q Consensus       167 ~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~---~~--l~il~~~lv~~~v~~~~~  232 (285)
                      +.|.-.++.+=+-||++.+...++|....++|.+++...+.-+..+   |+  +..-....+++.+.|..-
T Consensus       115 v~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq  185 (395)
T COG2807         115 VINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQ  185 (395)
T ss_pred             HHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999998887665432   33  444444445555555443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.47  E-value=0.00013  Score=68.65  Aligned_cols=115  Identities=12%  Similarity=0.106  Sum_probs=81.9

Q ss_pred             hHHHHHHHHHHHHHHHHHH-hCCCC----CChHHHHHHHHHHHHhhhhhhcccccceeeecccc---c-hhHhHHHHHHH
Q psy4795         125 PLMALGFIVHCCLIWILVV-WRPHP----NNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRN---K-EAAFSNFRLWE  195 (285)
Q Consensus       125 ~~i~~g~~l~~i~~~~l~~-~~p~~----~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~---~-~~afs~~~l~~  195 (285)
                      +.+.+|.++..++.+++.. ..|..    .+.+.+++...+.++|.|.+.+...++.+|.++++   + ...|+.+++..
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            5667777777777665322 22211    23467888888999999999999999999999764   2 78999999999


Q ss_pred             HHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4795         196 SVGFVIAYAYSTHLC----ARMKLYVMGVVLVTGFCGYVIVEVRHMMK  239 (285)
Q Consensus       196 ~lG~~ig~~~s~~l~----~~~~l~il~~~lv~~~v~~~~~e~~~~~~  239 (285)
                      |+|..++....+++.    ..+-..+..+..+++++.|..-..+++++
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~  129 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKV  129 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence            999999999988887    33445555566677777666655444444

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.41  E-value=0.00036  Score=51.33  Aligned_cols=51  Identities=22%  Similarity=0.422  Sum_probs=43.3

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHH
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIV  133 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l  133 (285)
                      |.+.|..+ +|+  .++|.++.+.++...+++|+.|.++||.+|++.+..+..+
T Consensus        22 fl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   22 FLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             hhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            56777764 666  6899999999999999999999999999999988765543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.32  E-value=0.021  Score=54.56  Aligned_cols=143  Identities=15%  Similarity=0.128  Sum_probs=99.1

Q ss_pred             hhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q psy4795          83 WGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGL  160 (285)
Q Consensus        83 t~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l  160 (285)
                      .+.|+.+..|.  .+..+.+..+-++-++|-+++-++..|+...|.+.+..+...+..+...+    .++ .+......+
T Consensus       259 l~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l----~~g-~v~~~~l~~  333 (422)
T COG0738         259 LVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVAL----IGG-VVALYALFL  333 (422)
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH----hcC-hHHHHHHHH
Confidence            37787777776  35668888899999999999889999999999888777554444433333    123 333444777


Q ss_pred             HHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4795         161 WGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVE  233 (285)
Q Consensus       161 ~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~~~l~il~~~lv~~~v~~~~~e  233 (285)
                      .|+.++...|.+++.-.+..|++.+.+ |..=.+--+|.++-+.+-+.+..+.  -++.....+.+.||..+-
T Consensus       334 ig~F~simfPTIfslal~~l~~~ts~~-s~~l~maivGGAiiP~l~G~i~d~~--g~~~~~~~~pllc~lyV~  403 (422)
T COG0738         334 IGLFNSIMFPTIFSLALKNLGEHTSVG-SGLLVMAIVGGAIIPPLQGVIADMF--GIQLTFLIVPLLCYLYVL  403 (422)
T ss_pred             HHHHhHHHHHHHHHHHHhccCcccccc-ceeeeeheecchHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHH
Confidence            899999999999999999998444444 3333444667777777777766543  333444467777777773

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.27  E-value=0.008  Score=57.78  Aligned_cols=120  Identities=12%  Similarity=0.064  Sum_probs=83.2

Q ss_pred             HHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhH
Q psy4795         109 ICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAA  187 (285)
Q Consensus       109 i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~a  187 (285)
                      ..-+....+.|.+|.||+++++.+...+...++.+    ..+.+..-+.-+..|+..+. ....++++-...|+++ ..+
T Consensus        56 ~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~----~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~v  130 (412)
T PF01770_consen   56 AFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLF----GTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKV  130 (412)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH----HCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHH
Confidence            34445567999999999999999988887766555    35667777778899988876 5566677777777776 778


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHHHHHHHHHH
Q psy4795         188 FSNFRLWESVGFVIAYAYSTHL------CARMKLYVMGVVLVTGFCGYVIVE  233 (285)
Q Consensus       188 fs~~~l~~~lG~~ig~~~s~~l------~~~~~l~il~~~lv~~~v~~~~~e  233 (285)
                      -|-.|-..-+|..++..+|-.+      ......++-++...++++.-+...
T Consensus       131 ts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP  182 (412)
T PF01770_consen  131 TSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLP  182 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            8788888888877777766543      223334555555555544444433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.22  E-value=0.0028  Score=49.16  Aligned_cols=122  Identities=17%  Similarity=0.198  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHHHHHhcccCCCCcchHHHHhhh--------hhhhhhhccch
Q psy4795          22 MICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGL--------WGAYISCALGV   93 (285)
Q Consensus        22 l~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~~fl~~e~~~~~p~l~~~~~~f--------t~~Y~~~~lg~   93 (285)
                      +..++++..+.++..|.+.+++|||..+..+.....+........++. ...........+        ...+..+....
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   82 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNI-TVLIIARFLQGFGAAFALVAGAALIADIYPP   82 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence            345677888899999999999999766665555554443322222111 111111111111        12333333322


Q ss_pred             ----hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHh
Q psy4795          94 ----SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW  144 (285)
Q Consensus        94 ----~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~  144 (285)
                          ...+.......++..++..+.|.+.|+.|.+...........+..+.....
T Consensus        83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (141)
T TIGR00880        83 EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFL  137 (141)
T ss_pred             hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhc
Confidence                235577778889999999999999999887776666555555544444333

>KOG0637|consensus

Probab=97.21  E-value=0.00013  Score=70.26  Aligned_cols=122  Identities=20%  Similarity=0.255  Sum_probs=84.8

Q ss_pred             ccch--hHHHHHHHHHHHHHHHHHhhhhhhhcc----cCChhHHHHHH-HHHHHHHHHHHHhCC--------CCCC-hHH
Q psy4795          90 ALGV--SSVGYVMICFGVVNAICSLLFGTLMKF----IGRSPLMALGF-IVHCCLIWILVVWRP--------HPNN-PKI  153 (285)
Q Consensus        90 ~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDr----iGrk~~i~~g~-~l~~i~~~~l~~~~p--------~~~~-~~~  153 (285)
                      .+|+  ++.+.+-.+-++...+.+|+-|..|||    +|||+..+... ...+++.++ +.+.+        +... ...
T Consensus        61 ~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~L-ig~aaDig~~lgd~~~~~~~~  139 (498)
T KOG0637|consen   61 SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFL-IGYAADIGLLLGDNERKPVKP  139 (498)
T ss_pred             HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhh-hhhHhhhhHHhcCCcccccch
Confidence            3666  467778889999999999999999995    99988766544 444444442 22211        1111 111


Q ss_pred             HHHHHH-----HHHHhhhhhhcccccceeeec-cccchh-HhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795         154 FFTISG-----LWGVGDAVWQTQVNGLYGTLF-RRNKEA-AFSNFRLWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       154 ~~~~~~-----l~Gig~g~~~~~~~ali~~~f-p~~~~~-afs~~~l~~~lG~~ig~~~s~~l~~~  212 (285)
                      ..+..+     ++=+.+-..|++.-+++.|+. ++++.+ |.+.+.++..+|-++|++.++++..+
T Consensus       140 rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~~~  205 (498)
T KOG0637|consen  140 RAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLGLY  205 (498)
T ss_pred             HHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccCce
Confidence            222233     333566788999999999997 455544 99999999999999999999875443

>KOG0254|consensus

Probab=97.14  E-value=0.0062  Score=59.96  Aligned_cols=95  Identities=20%  Similarity=0.104  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHh---CCC-----CCChHHHHHHHHHHHHhhhhh
Q psy4795          97 GYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW---RPH-----PNNPKIFFTISGLWGVGDAVW  168 (285)
Q Consensus        97 G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~---~p~-----~~~~~~~~~~~~l~Gig~g~~  168 (285)
                      .....+.++.+.++..+++.+.||+|||++++.|...+.++.+.+...   ...     ....++..+...+.-...+..
T Consensus       332 ~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g  411 (513)
T KOG0254|consen  332 FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIG  411 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcc
Confidence            567788999999999999999999999999999998877776643221   111     111222222222222233333


Q ss_pred             hcccc-cceeeeccccc-hhHhHHH
Q psy4795         169 QTQVN-GLYGTLFRRNK-EAAFSNF  191 (285)
Q Consensus       169 ~~~~~-ali~~~fp~~~-~~afs~~  191 (285)
                      ..+.+ .+..|.||.+. ..+.++-
T Consensus       412 ~g~v~w~~~sEifp~~~r~~~~s~~  436 (513)
T KOG0254|consen  412 WGPVPWVIVSEIFPLRLRSKGASLA  436 (513)
T ss_pred             cccchhhhhhccCcHhHHhhhHHHH
Confidence            33343 46688999876 5555543

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.13  E-value=0.0085  Score=57.98  Aligned_cols=128  Identities=20%  Similarity=0.201  Sum_probs=86.6

Q ss_pred             hhhhhhccchh--HHHHHHHHHHHHHHHHHhhhhhhhccc-----CChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHH
Q psy4795          84 GAYISCALGVS--SVGYVMICFGVVNAICSLLFGTLMKFI-----GRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFT  156 (285)
Q Consensus        84 ~~Y~~~~lg~~--~~G~v~~~~gv~~~i~s~l~G~LsDri-----Grk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~  156 (285)
                      ..|+.+.+|++  +.........+-+.+ -|+.|.++|.+     .||+-++++.++..+....+.......++.....+
T Consensus        13 ~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~   91 (433)
T PF03092_consen   13 YPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVV   91 (433)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHH
Confidence            35677888883  444555555555554 56679999975     36777777877776555444443322344455555


Q ss_pred             HHHHHHHhhhhhhcccccceeeeccccc---hhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795         157 ISGLWGVGDAVWQTQVNGLYGTLFRRNK---EAAFSNFRLWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       157 ~~~l~Gig~g~~~~~~~ali~~~fp~~~---~~afs~~~l~~~lG~~ig~~~s~~l~~~  212 (285)
                      ..++..+|.+......-+++.|...++.   +.--|....++++|..++..+++.+..+
T Consensus        92 ~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~  150 (433)
T PF03092_consen   92 LLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS  150 (433)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence            6667778888888888888888764433   4555677889999999999888876543

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG1330|consensus

Probab=97.12  E-value=0.0019  Score=62.59  Aligned_cols=137  Identities=12%  Similarity=0.013  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhccc----CC---hhHHHHHHHHH-HHHHHHHHHhCCCCCChHHHHHHHHHHHHhhh-h
Q psy4795          97 GYVMICFGVVNAICSLLFGTLMKFI----GR---SPLMALGFIVH-CCLIWILVVWRPHPNNPKIFFTISGLWGVGDA-V  167 (285)
Q Consensus        97 G~v~~~~gv~~~i~s~l~G~LsDri----Gr---k~~i~~g~~l~-~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g-~  167 (285)
                      .+...++..+..+|..++|.++||+    .|   .+.-.+...+- ..+...++.+....+.........+++|.... .
T Consensus       286 ~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~  365 (493)
T KOG1330|consen  286 LIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWF  365 (493)
T ss_pred             hhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Confidence            3567778888899999999999983    32   22222222211 11222233332223333445555677775443 4


Q ss_pred             hhcccccceeeeccccc-hhHhHHHHHHHHH-HHHHHHHHhhhhhH---------------HHHHHHHHHHHHHHHHHHH
Q psy4795         168 WQTQVNGLYGTLFRRNK-EAAFSNFRLWESV-GFVIAYAYSTHLCA---------------RMKLYVMGVVLVTGFCGYV  230 (285)
Q Consensus       168 ~~~~~~ali~~~fp~~~-~~afs~~~l~~~l-G~~ig~~~s~~l~~---------------~~~l~il~~~lv~~~v~~~  230 (285)
                      ....++-+..+.+|+++ ..|++..+....+ |.+-+.-+-+.+..               ....+....++..+...+.
T Consensus       366 ~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~~~~~~~~~~~~s~~~~a~~l~~a~~~~~  445 (493)
T KOG1330|consen  366 NWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYKPAGGIDSVLQTSLRLCAALLAKALIWSI  445 (493)
T ss_pred             ccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCCccccccccccchhhhhHHHHHHHHHHhh
Confidence            45566777788887766 8999988766654 22222211112211               1346666777777777776


Q ss_pred             HHH
Q psy4795         231 IVE  233 (285)
Q Consensus       231 ~~e  233 (285)
                      -.-
T Consensus       446 ~~~  448 (493)
T KOG1330|consen  446 GSP  448 (493)
T ss_pred             ccc
Confidence            633

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.10  E-value=0.17  Score=50.05  Aligned_cols=113  Identities=9%  Similarity=0.009  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcccCC--h----hH-HHHHHHHHHHHHHHHHHh--CCCC---CChHHHHHHHHHHHH
Q psy4795          96 VGYVMICFGVVNAICSLLFGTLMKFIGR--S----PL-MALGFIVHCCLIWILVVW--RPHP---NNPKIFFTISGLWGV  163 (285)
Q Consensus        96 ~G~v~~~~gv~~~i~s~l~G~LsDriGr--k----~~-i~~g~~l~~i~~~~l~~~--~p~~---~~~~~~~~~~~l~Gi  163 (285)
                      ..+.....++.-++.+|+.+++=.|.+|  |    +. +.+|+++..++++.+...  ..++   -++++.....++.++
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~  389 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF  389 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            5577888999888889988877555522  1    11 567777777777655321  1111   356667777889999


Q ss_pred             hhhhhhcccccceeeeccccc-hhHhHHHHHH-HHHHHHHHHHHhhh
Q psy4795         164 GDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLW-ESVGFVIAYAYSTH  208 (285)
Q Consensus       164 g~g~~~~~~~ali~~~fp~~~-~~afs~~~l~-~~lG~~ig~~~s~~  208 (285)
                      |.=+..|.-.++++++.|++. +.-.+.+.+. ..+|..++-.++..
T Consensus       390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~  436 (493)
T PRK15462        390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQ  436 (493)
T ss_pred             HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999887 8888888663 35766666554443

>KOG2816|consensus

Probab=97.07  E-value=0.0062  Score=59.58  Aligned_cols=103  Identities=20%  Similarity=0.193  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeecc
Q psy4795         102 CFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFR  181 (285)
Q Consensus       102 ~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp  181 (285)
                      ..++...+.+++-|.++||+|||..+....+...+..+.+.+..      |++++...+.| +.+......+++++|...
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~------~~~~~~~~l~g-~~~~~~s~~~a~vadis~  142 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG------YWFFLLLGLSG-GFSAIFSVGFAYVADISS  142 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH------HHHhhhccccc-chhhhhhhhhhheeeccc
Confidence            45788899999999999999999999888776665554443311      33333233333 445556677889999875


Q ss_pred             cc-chhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         182 RN-KEAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       182 ~~-~~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      ++ |...+++.+-....+.+++++.++++.-
T Consensus       143 ~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~  173 (463)
T KOG2816|consen  143 EEERSSSIGLLSGTFGAGLVIGPALGGYLVK  173 (463)
T ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            54 4788888888888889999998887643

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.05  E-value=0.0068  Score=50.68  Aligned_cols=101  Identities=16%  Similarity=0.113  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeec
Q psy4795         101 ICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLF  180 (285)
Q Consensus       101 ~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~f  180 (285)
                      .+.-....+++++.+.+.+++|.|..+++|.+...+-.... + .   ++.+..+...++.|++.+...+....++.+.-
T Consensus        44 ai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~-~---~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s  118 (156)
T PF05978_consen   44 AILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-F-Y---PNSYTLYPASALLGFGAALLWTAQGTYLTSYS  118 (156)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-H-h---hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC
Confidence            33444556666777788999999999999998877544332 2 2   24578888899999999999999999988876


Q ss_pred             cccc-hhHhHHHHHHHHHHHHHHHHHh
Q psy4795         181 RRNK-EAAFSNFRLWESVGFVIAYAYS  206 (285)
Q Consensus       181 p~~~-~~afs~~~l~~~lG~~ig~~~s  206 (285)
                      +++. ++-.+++--..+.+..+|-.+.
T Consensus       119 ~~~~~~~~~~ifw~i~~~s~i~G~~~~  145 (156)
T PF05978_consen  119 TEETIGRNTGIFWAIFQSSLIFGNLFL  145 (156)
T ss_pred             CHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            5544 7777776666666776665543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG0253|consensus

Probab=97.05  E-value=0.0016  Score=61.84  Aligned_cols=126  Identities=10%  Similarity=0.113  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeee
Q psy4795         100 MICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTL  179 (285)
Q Consensus       100 ~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~  179 (285)
                      .....+.+.-|.+++|.+.||+|||+.+....++..++.+++..-.  +++....  ..+..-...+......|.+-.|.
T Consensus       387 llitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~--~rn~~tv--llf~arafisg~fqvaYvYtPEV  462 (528)
T KOG0253|consen  387 LLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK--TRNAYTV--LLFTARAFISGAFQVAYVYTPEV  462 (528)
T ss_pred             HHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc--CcchhHH--HHHHHHHHHhchheEEEEecCcc
Confidence            4556778888999999999999999999988888777666654432  2332221  12222223333345678999999


Q ss_pred             ccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHH
Q psy4795         180 FRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCAR--MKLYVMGVVLVTGFCGY  229 (285)
Q Consensus       180 fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~--~~l~il~~~lv~~~v~~  229 (285)
                      ||+.. +.+.+.-.-+.-+|..+...+.-....+  .-+.+.-++.+++.++-
T Consensus       463 yPTavRatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIav  515 (528)
T KOG0253|consen  463 YPTAVRATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAV  515 (528)
T ss_pred             cchhhhhcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHh
Confidence            99865 7777766666667776666655222211  12344444444444443

>KOG2816|consensus

Probab=96.98  E-value=0.078  Score=51.95  Aligned_cols=193  Identities=15%  Similarity=0.197  Sum_probs=125.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHH-HHHhc-c----cCCC----------Cc-------
Q psy4795          17 SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIW-ILVVW-R----PHPN----------NP-------   73 (285)
Q Consensus        17 ~~G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~-~fl~~-e----~~~~----------~p-------   73 (285)
                      ..|.+..+++.+..++..+.+++.+..|...++....+..++.++ ..++. |    |..+          +.       
T Consensus       149 ~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~~~  228 (463)
T KOG2816|consen  149 SIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSSHVAD  228 (463)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccchhhhh
Confidence            467888888899999999999999998886555555555555422 22222 2    1111          00       


Q ss_pred             -------------chHHHHh---hhh----------hhhhhhccch--hHHHHHHHHHHHHHHHHHhhhh-hhhcccCCh
Q psy4795          74 -------------KIFFTIS---GLW----------GAYISCALGV--SSVGYVMICFGVVNAICSLLFG-TLMKFIGRS  124 (285)
Q Consensus        74 -------------~l~~~~~---~ft----------~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G-~LsDriGrk  124 (285)
                                   .+.....   .+.          +.|+...+|.  ++.+......+....+++.+.. .+...+|-|
T Consensus       229 ~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~  308 (463)
T KOG2816|consen  229 AFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEK  308 (463)
T ss_pred             hhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence                         0000000   000          1233333444  5778777888888888888766 677889999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccc-cchhHhHHHHHHHHHHHHHHH
Q psy4795         125 PLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRR-NKEAAFSNFRLWESVGFVIAY  203 (285)
Q Consensus       125 ~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~-~~~~afs~~~l~~~lG~~ig~  203 (285)
                      +++.+|+....+......+.    ++.|..+.... .........+...++.....++ +++.++++....+++...++.
T Consensus       309 ~~i~lGl~~~~~~~~~~af~----~~~w~~~~~~v-~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~  383 (463)
T KOG2816|consen  309 RLISLGLLSEFLQLLLFAFA----TETWMMFAAGV-VVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSP  383 (463)
T ss_pred             hHhhHHHHHHHHHHHHHHHh----ccchhhhHHHH-HHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhH
Confidence            99999999988887765552    33355555333 3445566778888888888755 459999999999999888887


Q ss_pred             HHhhhhhHHHH
Q psy4795         204 AYSTHLCARMK  214 (285)
Q Consensus       204 ~~s~~l~~~~~  214 (285)
                      ..=+.+...++
T Consensus       384 ~~~~~i~~~t~  394 (463)
T KOG2816|consen  384 ALYGNIFALTL  394 (463)
T ss_pred             HHHHHHHHHHH
Confidence            76555544433

>KOG2563|consensus

Probab=96.90  E-value=0.0073  Score=58.43  Aligned_cols=117  Identities=13%  Similarity=0.080  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHH-HHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795          95 SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMA-LGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN  173 (285)
Q Consensus        95 ~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~-~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~  173 (285)
                      ..|++....-++.++++.+.|.+.||....+... .......++.+.+....-...+.++++....++|.+.....|.-+
T Consensus       302 ~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~  381 (480)
T KOG2563|consen  302 FAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGF  381 (480)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcce
Confidence            6788888888899999999999999988755533 333333333222222222234557778888899998888888778


Q ss_pred             cceeee-ccccchhHhH-HHHHHHHHHHHHHHHHhhhhhH
Q psy4795         174 GLYGTL-FRRNKEAAFS-NFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       174 ali~~~-fp~~~~~afs-~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      .+-.|. ||...+...+ +.-+.|.-|..+-++.+.....
T Consensus       382 ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~  421 (480)
T KOG2563|consen  382 ELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAED  421 (480)
T ss_pred             eeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhc
Confidence            887776 6776655555 5555666677777666655433

>TIGR01272 gluP glucose/galactose transporter

Probab=96.77  E-value=0.003  Score=58.24  Aligned_cols=62  Identities=13%  Similarity=0.113  Sum_probs=55.3

Q ss_pred             CChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         149 NNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       149 ~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      .+++.+.+..++.|.|.++.|+..|.++.++.|+|+ .+..+..+.++++|..+|+.+.+.+-
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i   70 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI   70 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            456778888999999999999999999999988766 88899999999999999999988654

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.77  E-value=0.026  Score=54.80  Aligned_cols=86  Identities=15%  Similarity=0.133  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHh----CCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795          98 YVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW----RPHPNNPKIFFTISGLWGVGDAVWQTQVN  173 (285)
Q Consensus        98 ~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~----~p~~~~~~~~~~~~~l~Gig~g~~~~~~~  173 (285)
                      ++....-+.+.+..+.--.+..|+..+.-+..++++..+.++....+    .+.....+..++..++.|+++|..|+...
T Consensus        49 ~~~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~  128 (437)
T TIGR00939        49 YYTLASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLF  128 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccch
Confidence            44455556666666666666677776545555655444443332221    12122355666778889999999999888


Q ss_pred             cceeeeccccc
Q psy4795         174 GLYGTLFRRNK  184 (285)
Q Consensus       174 ali~~~fp~~~  184 (285)
                      ++.+ .+|++.
T Consensus       129 gla~-~fp~~~  138 (437)
T TIGR00939       129 GLAG-VFPSTY  138 (437)
T ss_pred             hhcc-cCCHHH
Confidence            8876 566554

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=96.72  E-value=8.9e-06  Score=77.78  Aligned_cols=113  Identities=17%  Similarity=0.120  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHH---HhCCCCC---ChHHHHHHHHHHHH-hhhhhhcc
Q psy4795          99 VMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILV---VWRPHPN---NPKIFFTISGLWGV-GDAVWQTQ  171 (285)
Q Consensus        99 v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~---~~~p~~~---~~~~~~~~~~l~Gi-g~g~~~~~  171 (285)
                      .....++...++.+++..+.||+|||++++.+.....++...+.   .+.++.+   +... .+...++.. ....+.+.
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~l~~~~~~~g~~~~  369 (451)
T PF00083_consen  291 ATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILS-IVFLALFFAFFSLGWGPL  369 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ceeeeecccccccccccc
Confidence            44556677778888888999999999999999887776665542   3333221   2222 222222222 22245666


Q ss_pred             cccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795         172 VNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       172 ~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~  212 (285)
                      ...+..|+||++. ..+.++......++..++..+.+.+...
T Consensus       370 ~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~  411 (451)
T PF00083_consen  370 PWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN  411 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc
Confidence            6788899999876 8888888888888888777666555433

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2615|consensus

Probab=96.65  E-value=0.031  Score=53.32  Aligned_cols=116  Identities=14%  Similarity=0.110  Sum_probs=81.3

Q ss_pred             hccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccC--ChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHh
Q psy4795          89 CALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIG--RSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVG  164 (285)
Q Consensus        89 ~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriG--rk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig  164 (285)
                      ..+|.  .++|.+....|+.+.+.+..-.+..||..  .+.....+..+    ..+.+........+..++....+..++
T Consensus       290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~----~vP~~llls~~~~~~~l~~~s~l~sf~  365 (451)
T KOG2615|consen  290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLL----IVPAFLLLSLARTPVVLYLGSTLKSFS  365 (451)
T ss_pred             CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHH----HHHHHHHHhccccchhhhHHHHHHHHH
Confidence            34555  36777777777777777776666666644  23333332222    222222222233446778888899999


Q ss_pred             hhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795         165 DAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTH  208 (285)
Q Consensus       165 ~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~  208 (285)
                      .+...|....++....|++. +++.++.+-..+++=++|++.++.
T Consensus       366 ~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~  410 (451)
T KOG2615|consen  366 TASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGV  410 (451)
T ss_pred             HHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhe
Confidence            99999999999999998766 999999999999999999999855

>KOG2563|consensus

Probab=96.59  E-value=0.038  Score=53.60  Aligned_cols=118  Identities=14%  Similarity=0.180  Sum_probs=82.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHH-HHHhCCC-CCChH--HHHHHHHHHHHhhhhhh
Q psy4795          94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWI-LVVWRPH-PNNPK--IFFTISGLWGVGDAVWQ  169 (285)
Q Consensus        94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~-l~~~~p~-~~~~~--~~~~~~~l~Gig~g~~~  169 (285)
                      +.+-+..+++.++.+..++.+-|+.||+|-|....++.+++.++... +.-..|. ++.++  +......+.+...-.+.
T Consensus        79 ~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim  158 (480)
T KOG2563|consen   79 SAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFIL  158 (480)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhh
Confidence            45668999999999999999999999999999999999999888765 3322221 13333  33333334333332222


Q ss_pred             cccccceee-ecccc-chhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795         170 TQVNGLYGT-LFRRN-KEAAFSNFRLWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       170 ~~~~ali~~-~fp~~-~~~afs~~~l~~~lG~~ig~~~s~~l~~~  212 (285)
                      . .++-+++ .||++ +..|-++--+...+|.++|+.+.+.+..+
T Consensus       159 ~-lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~  202 (480)
T KOG2563|consen  159 G-LPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS  202 (480)
T ss_pred             c-cccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence            1 2333444 47655 48999999999999999999999887543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=96.52  E-value=0.05  Score=55.31  Aligned_cols=59  Identities=10%  Similarity=0.192  Sum_probs=45.1

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHH-HHHHHHhhhhhhhcccC--ChhHHHHHHHHHHHHHHH
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGV-VNAICSLLFGTLMKFIG--RSPLMALGFIVHCCLIWI  140 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv-~~~i~s~l~G~LsDriG--rk~~i~~g~~l~~i~~~~  140 (285)
                      |.|.|++..+|.  .++++++....+ +.+++.+++|+++||++  .|+.+.++.++..+..+.
T Consensus       352 ~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       352 FLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            458899988888  467877776665 66899999999999988  456777777766666443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.49  E-value=0.067  Score=52.53  Aligned_cols=101  Identities=14%  Similarity=0.249  Sum_probs=63.2

Q ss_pred             HHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHH-HHhCCCCC-----------------------------ChHHHHH
Q psy4795         107 NAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWIL-VVWRPHPN-----------------------------NPKIFFT  156 (285)
Q Consensus       107 ~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l-~~~~p~~~-----------------------------~~~~~~~  156 (285)
                      .++..++.+++++|++|++++-.-.......+.+. +...|.++                             ....+++
T Consensus        57 ~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv  136 (472)
T TIGR00769        57 AVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYV  136 (472)
T ss_pred             HHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHH
Confidence            34447889999999999998776444333333221 11112111                             1124455


Q ss_pred             HHHHHHHhhhhhhc-ccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         157 ISGLWGVGDAVWQT-QVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       157 ~~~l~Gig~g~~~~-~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      ..-+||.-   .-+ ..-+...|.+..++ .+-++.+...-|+|..+|..+..+++
T Consensus       137 ~~elw~~~---vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       137 MAELWGSV---VLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555521   111 33467778887776 89999999999999999887776765

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.45  E-value=0.00054  Score=68.20  Aligned_cols=121  Identities=11%  Similarity=0.107  Sum_probs=2.9

Q ss_pred             hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHH----HhCCC-----C--------
Q psy4795          88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILV----VWRPH-----P--------  148 (285)
Q Consensus        88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~----~~~p~-----~--------  148 (285)
                      ++..++  +++|++...+-+++.+..++..+..+|-.|-+.+-.|.++.+++.++..    ...+.     .        
T Consensus        30 ErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~  109 (539)
T PF03137_consen   30 ERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSI  109 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccc
Confidence            445666  5899999999999999999999999998888888888888777654321    11110     0        


Q ss_pred             -----------------------------CChHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHH
Q psy4795         149 -----------------------------NNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVG  198 (285)
Q Consensus       149 -----------------------------~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG  198 (285)
                                                   ..++++++..++.|+|.+-.++--.+++=|..++++ ..-.++......+|
T Consensus       110 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lG  189 (539)
T PF03137_consen  110 SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILG  189 (539)
T ss_dssp             ------------------------------------------SSS-----------------------------------
T ss_pred             ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhcc
Confidence                                         013556677889999999999999999999998776 77788999999999


Q ss_pred             HHHHHHHhhh
Q psy4795         199 FVIAYAYSTH  208 (285)
Q Consensus       199 ~~ig~~~s~~  208 (285)
                      -++||.+++.
T Consensus       190 Pa~Gf~lg~~  199 (539)
T PF03137_consen  190 PALGFLLGSF  199 (539)
T ss_dssp             ----------
T ss_pred             HHHHHHHHHH
Confidence            9999999876

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG0255|consensus

Probab=96.16  E-value=0.075  Score=52.13  Aligned_cols=112  Identities=13%  Similarity=0.060  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhccccccee
Q psy4795          98 YVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYG  177 (285)
Q Consensus        98 ~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~  177 (285)
                      ......+..+.......+.+.||+|||.....+..+..++.+...+. +.....++..+...+-..+.+.-....+....
T Consensus       354 ~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (521)
T KOG0255|consen  354 LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWL-PDDLGGWLHWILPLLGKFFIGSAFNLIFLYSA  432 (521)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHh-hccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555777777778899999999999999998888777665443 32332112222222222333333344478888


Q ss_pred             eeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         178 TLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       178 ~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      +++|+.. ..+.+..+.+..+|..++..+.....
T Consensus       433 el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~  466 (521)
T KOG0255|consen  433 ELIPTVVRNTAVGAISAAARLGSILAPLFPLLLR  466 (521)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999877 88999999999999988888775443

>KOG0252|consensus

Probab=96.11  E-value=0.0092  Score=58.00  Aligned_cols=123  Identities=11%  Similarity=0.097  Sum_probs=78.0

Q ss_pred             HHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCC-CCChHHHHHHHHHHH-Hhhhhhhcccccceeeeccccc-hh
Q psy4795         110 CSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPH-PNNPKIFFTISGLWG-VGDAVWQTQVNGLYGTLFRRNK-EA  186 (285)
Q Consensus       110 ~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~-~~~~~~~~~~~~l~G-ig~g~~~~~~~ali~~~fp~~~-~~  186 (285)
                      +-.++..+.|++|||++.+.|.+++.+..+.+-. .++ ..+..-++++..+.. +++-.=++....+-+|.||.+. ++
T Consensus       364 Gyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~-~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t  442 (538)
T KOG0252|consen  364 GYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAG-PYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRST  442 (538)
T ss_pred             ceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcC-CcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhh
Confidence            5556778999999999999999988876654322 111 111111222222211 2222233444556678899886 88


Q ss_pred             HhHHHHHHHHHHHHHHHHHhhhhhH---------HHHHHHHHHHHHHHHHHHHHHH
Q psy4795         187 AFSNFRLWESVGFVIAYAYSTHLCA---------RMKLYVMGVVLVTGFCGYVIVE  233 (285)
Q Consensus       187 afs~~~l~~~lG~~ig~~~s~~l~~---------~~~l~il~~~lv~~~v~~~~~e  233 (285)
                      ..++....--.|..+|...-..+..         +.-++++..+.+++.+..+.++
T Consensus       443 ~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p  498 (538)
T KOG0252|consen  443 CHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP  498 (538)
T ss_pred             hhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEee
Confidence            8889888888888888766555444         4557777777777776666666

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.08  E-value=0.096  Score=50.70  Aligned_cols=119  Identities=11%  Similarity=0.075  Sum_probs=84.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHH-H---hCCC--CCChHHHHHHHHHHHHhhhh
Q psy4795          94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILV-V---WRPH--PNNPKIFFTISGLWGVGDAV  167 (285)
Q Consensus        94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~-~---~~p~--~~~~~~~~~~~~l~Gig~g~  167 (285)
                      ...|.+..+..++..++..+..+...+..-|+++....++..+..+.-. +   |...  -++.+..+.-.++..+...+
T Consensus       255 ~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i  334 (433)
T PF03092_consen  255 SFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMI  334 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHH
Confidence            4577777888888889988888877777778888777766554433211 1   1000  01123334445666777777


Q ss_pred             hhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795         168 WQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       168 ~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~  212 (285)
                      -.-+...++.++-|++. ++.|++.--..|+|..++..++..+...
T Consensus       335 ~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~  380 (433)
T PF03092_consen  335 AFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMEL  380 (433)
T ss_pred             HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77788888999999987 9999999999999999999888887544

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG4686|consensus

Probab=95.94  E-value=0.014  Score=53.87  Aligned_cols=147  Identities=12%  Similarity=0.028  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccce
Q psy4795          98 YVMICFGVVNAICSLLFGTLMKF-IGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLY  176 (285)
Q Consensus        98 ~v~~~~gv~~~i~s~l~G~LsDr-iGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali  176 (285)
                      ++-..++.=|++.+.++|++.|| +|-|.-.++-.+...++.+.... ..-.+..|......+++|+|.-..-...|.+.
T Consensus        83 LlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~-Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~ya  161 (459)
T KOG4686|consen   83 LLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAA-GGISHAFWTMLAGRFLFGIGGESLAVAQNKYA  161 (459)
T ss_pred             eeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHhhheeeccCchhhhhhhccee
Confidence            45566777888999999999996 55443322222222222222111 11124567888889999998877777788888


Q ss_pred             eeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy4795         177 GTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARM--------------KLYVMGVVLVTGFCGYVIVEVRHMMKAR  241 (285)
Q Consensus       177 ~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~--------------~l~il~~~lv~~~v~~~~~e~~~~~~~~  241 (285)
                      ...|..+. .-+|++..-.--+|+.+-+.+-+.++...              .+.+-...+..+++|-...-+..+|.+|
T Consensus       162 v~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAer  241 (459)
T KOG4686|consen  162 VYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAER  241 (459)
T ss_pred             EEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence            88886544 88898887777788776655555544322              1222223456677777777777777766


Q ss_pred             hhhh
Q psy4795         242 RQKR  245 (285)
Q Consensus       242 ~~~~  245 (285)
                      ++..
T Consensus       242 ilh~  245 (459)
T KOG4686|consen  242 ILHL  245 (459)
T ss_pred             HHhh
Confidence            5444

>KOG1237|consensus

Probab=95.73  E-value=0.048  Score=54.80  Aligned_cols=156  Identities=15%  Similarity=0.131  Sum_probs=103.4

Q ss_pred             hhhhhccchh--HHHHHHHHHHHHHHHHHhhhhhhhc-ccCChhHHHHHHHHHHHHHHHHH------HhCCC------C-
Q psy4795          85 AYISCALGVS--SVGYVMICFGVVNAICSLLFGTLMK-FIGRSPLMALGFIVHCCLIWILV------VWRPH------P-  148 (285)
Q Consensus        85 ~Y~~~~lg~~--~~G~v~~~~gv~~~i~s~l~G~LsD-riGrk~~i~~g~~l~~i~~~~l~------~~~p~------~-  148 (285)
                      .|++..++..  .+.-....++-.......+++.++| .+||.+.+.++.++...+.+.+-      ...|.      . 
T Consensus        62 ~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~  141 (571)
T KOG1237|consen   62 TYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGG  141 (571)
T ss_pred             HHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCC
Confidence            3444555553  3345566677777788889999999 59999999999888777643211      11110      1 


Q ss_pred             ---C-----ChHHHHHHHHHHHHhhhhhhcccccceeeeccc----cc---hhHhHHHHHHHHHHHHHHHHHhhhhh--H
Q psy4795         149 ---N-----NPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRR----NK---EAAFSNFRLWESVGFVIAYAYSTHLC--A  211 (285)
Q Consensus       149 ---~-----~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~----~~---~~afs~~~l~~~lG~~ig~~~s~~l~--~  211 (285)
                         +     ....++...-+..+|.|...+...+.=+|.|++    ++   ..-|.-+.+-++.|..++...-.+..  .
T Consensus       142 ~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~  221 (571)
T KOG1237|consen  142 NVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNV  221 (571)
T ss_pred             CcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcc
Confidence               0     123556666777789999999999999999972    11   35677888888888888877666552  2


Q ss_pred             HH--HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy4795         212 RM--KLYVMGVVLVTGFCGYVIVEVRHMMKA  240 (285)
Q Consensus       212 ~~--~l~il~~~lv~~~v~~~~~e~~~~~~~  240 (285)
                      .|  ..-+..+...++.+.|+.-...++.++
T Consensus       222 ~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~  252 (571)
T KOG1237|consen  222 GWKLGFGIPTVLNALAILIFLPGFPFYRYKK  252 (571)
T ss_pred             cceeeccHHHHHHHHHHHHHHcCceeEEeeC
Confidence            22  255566666777777776665554443

>KOG1479|consensus

Probab=95.42  E-value=0.32  Score=46.70  Aligned_cols=133  Identities=16%  Similarity=0.108  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHH--HHHHh--C--CCCCChHHHHHHHHHHHHhhhhhhcc
Q psy4795          98 YVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIW--ILVVW--R--PHPNNPKIFFTISGLWGVGDAVWQTQ  171 (285)
Q Consensus        98 ~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~--~l~~~--~--p~~~~~~~~~~~~~l~Gig~g~~~~~  171 (285)
                      ..+.+.-+...+...+--++.-|.  +..+..+..+..+.++  +.+.+  .  .....++...++..+.+.++|..|+.
T Consensus        60 ~~~~~a~i~~ll~~~~n~~~~~~~--~~~~~~~l~~~~il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs  137 (406)
T KOG1479|consen   60 SYTLAAQIPLLLFNLLNAFLNTRL--RTRVGYLLSLIAILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGS  137 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccc
Confidence            444455555566666666666662  2222222222222222  22222  1  11234556677788999999999987


Q ss_pred             cccceeeeccccc-hhHhHHHHHHHHHHHHHHH---HHhhhhhHHH--HHHHHHHHHHHHHHHHHHHH
Q psy4795         172 VNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAY---AYSTHLCARM--KLYVMGVVLVTGFCGYVIVE  233 (285)
Q Consensus       172 ~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~---~~s~~l~~~~--~l~il~~~lv~~~v~~~~~e  233 (285)
                      .+...+. +|++. ....+..++..-+-+..-.   +...--....  .+.+-.+++++..++|....
T Consensus       138 ~~G~a~~-~P~~ytqavm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~  204 (406)
T KOG1479|consen  138 LYGLAGL-FPSEYTQAVMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITSTVILLLCFVLYLVLP  204 (406)
T ss_pred             hhhhhhc-CCHHHHHHHHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHHHHHHHHHHHHHHhh
Confidence            7776655 55554 4333333333222222111   1111111222  23444555677778887443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=95.34  E-value=0.13  Score=50.50  Aligned_cols=112  Identities=14%  Similarity=0.037  Sum_probs=85.4

Q ss_pred             H-HHHHHHHHHHHHHHhhhhhhhcccCC-hhHHHHHHHHHHHHHHHHHHhCC--C---------------CCChHHHHHH
Q psy4795          97 G-YVMICFGVVNAICSLLFGTLMKFIGR-SPLMALGFIVHCCLIWILVVWRP--H---------------PNNPKIFFTI  157 (285)
Q Consensus        97 G-~v~~~~gv~~~i~s~l~G~LsDriGr-k~~i~~g~~l~~i~~~~l~~~~p--~---------------~~~~~~~~~~  157 (285)
                      | +.+.++.+.+.+.+++--++.+|+|+ |.+-.++.++.++++....+...  +               ....+..++.
T Consensus       307 G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  386 (477)
T TIGR01301       307 GAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIV  386 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHH
Confidence            5 78889999999999999999999995 66667787776666655443221  0               0113667777


Q ss_pred             HHHHHHhhhhhhcccccceeeeccc--cc-hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795         158 SGLWGVGDAVWQTQVNGLYGTLFRR--NK-EAAFSNFRLWESVGFVIAYAYSTH  208 (285)
Q Consensus       158 ~~l~Gig~g~~~~~~~ali~~~fp~--~~-~~afs~~~l~~~lG~~ig~~~s~~  208 (285)
                      ..+.|+.-+..++.-++++++..|+  ++ |.-.++.|.+.-+...+....++.
T Consensus       387 ~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~  440 (477)
T TIGR01301       387 FAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGP  440 (477)
T ss_pred             HHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999883  33 888899999988888777765544

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG3098|consensus

Probab=95.15  E-value=0.14  Score=49.99  Aligned_cols=103  Identities=19%  Similarity=0.266  Sum_probs=79.9

Q ss_pred             HHHH-HHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccc
Q psy4795          95 SVGY-VMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVN  173 (285)
Q Consensus        95 ~~G~-v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~  173 (285)
                      ..|+ ...+......+++++++.+.|++|.|..+.+|...+.......+.  |   |.+.+++..+++|+|.|+..+...
T Consensus        50 ~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~--~---N~y~~yfssallG~Gaallw~GqG  124 (461)
T KOG3098|consen   50 YAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF--P---NSYYLYFSSALLGFGAALLWTGQG  124 (461)
T ss_pred             CccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh--c---chHHHHHHHHHhhhhHHheecccc
Confidence            4553 356666778889999999999999999999999988876655443  2   348888999999999999888888


Q ss_pred             cceeeeccccc-hhHhHHHHHHHHHHHHHH
Q psy4795         174 GLYGTLFRRNK-EAAFSNFRLWESVGFVIA  202 (285)
Q Consensus       174 ali~~~fp~~~-~~afs~~~l~~~lG~~ig  202 (285)
                      .++.+..++++ ++--|+.=..-+.++.+|
T Consensus       125 ~ylt~~st~~tie~Nisi~Wai~~~~li~G  154 (461)
T KOG3098|consen  125 GYLTSNSTRETIERNISIFWAIGQSSLIIG  154 (461)
T ss_pred             eehhhcCChhhHHHHHHHHHHHHHHHHHhh
Confidence            99999887665 776666655556666666

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=94.54  E-value=1.1  Score=43.69  Aligned_cols=136  Identities=13%  Similarity=0.117  Sum_probs=92.6

Q ss_pred             hhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHH--HHHhCCCCC-ChH---HHH
Q psy4795          84 GAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWI--LVVWRPHPN-NPK---IFF  155 (285)
Q Consensus        84 ~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~--l~~~~p~~~-~~~---~~~  155 (285)
                      ..|+... |+  ..+|..-....+.++.+..++.++.+|+|..+.=..+...+.++..+  ..+|.|.++ +..   .++
T Consensus       282 t~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~  360 (432)
T PF06963_consen  282 TAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLL  360 (432)
T ss_pred             HHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHH
Confidence            4444433 55  56788888888899999999999999999999988999888877654  456666443 111   111


Q ss_pred             HHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy4795         156 TISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGV  220 (285)
Q Consensus       156 ~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~~l~il~~  220 (285)
                      ....+-=+|-=.+--...-++-|..|+++ +..+++-+-+||+--.+-+...-.++..-++..+..
T Consensus       361 ~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~P~~F~~lv~  426 (432)
T PF06963_consen  361 GGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPRPSQFGWLVL  426 (432)
T ss_pred             HHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCChHhcChHHH
Confidence            11111113333334444556667788755 899999999999999988888877776666555444

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK03612 spermidine synthase; Provisional

Probab=94.51  E-value=0.8  Score=45.56  Aligned_cols=118  Identities=9%  Similarity=-0.032  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHH-HHHHHHH-HHHHHHHHhCCC-CCChHHHHHHHHHHHHhhhhhhcc
Q psy4795          95 SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMA-LGFIVHC-CLIWILVVWRPH-PNNPKIFFTISGLWGVGDAVWQTQ  171 (285)
Q Consensus        95 ~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~-~g~~l~~-i~~~~l~~~~p~-~~~~~~~~~~~~l~Gig~g~~~~~  171 (285)
                      ..+.+..++-.+..+|+.++|++.++.-|+.... ++..+.. ++..++....+. .......+...++.++..|+..|-
T Consensus        51 ~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl  130 (521)
T PRK03612         51 QFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPL  130 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777888888888888888764422222111 1111111 111111111110 111122233344556666666554


Q ss_pred             cccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795         172 VNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       172 ~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~  212 (285)
                      ...+..+...++.+...+--+.+..+|..+|....+++-.+
T Consensus       131 ~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp  171 (521)
T PRK03612        131 LMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLP  171 (521)
T ss_pred             HHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHH
Confidence            44444332222346677788888999999998888776553

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=94.27  E-value=3.9  Score=39.77  Aligned_cols=42  Identities=10%  Similarity=0.073  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHH
Q psy4795          96 VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCL  137 (285)
Q Consensus        96 ~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~  137 (285)
                      ++....+-++..++.++.-|+..||..|.+.+....+.+-++
T Consensus        40 ~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~s   81 (432)
T PF06963_consen   40 VSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLS   81 (432)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHH
Confidence            444455566777888888999999999999988877654433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3626|consensus

Probab=93.76  E-value=0.058  Score=55.37  Aligned_cols=115  Identities=13%  Similarity=0.172  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHh----CCC-----------------------
Q psy4795          95 SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVW----RPH-----------------------  147 (285)
Q Consensus        95 ~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~----~p~-----------------------  147 (285)
                      +.|++...+-+++.+...+-.+..-|.-|.+.+-.|.++++++.++..+-    .|.                       
T Consensus       133 ~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~  212 (735)
T KOG3626|consen  133 QSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCC  212 (735)
T ss_pred             cceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhc
Confidence            46666666666666666666666666666666666666665554332210    000                       


Q ss_pred             ----------C----------CChH-HHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHH
Q psy4795         148 ----------P----------NNPK-IFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAY  205 (285)
Q Consensus       148 ----------~----------~~~~-~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~  205 (285)
                                +          +.+| ++++..++.|+|....+|.-.+++=|...+++ ..-+++....+-+|=++||.+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfll  292 (735)
T KOG3626|consen  213 NKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLL  292 (735)
T ss_pred             cCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHH
Confidence                      0          0133 56677889999999999988888888886655 778889999999999999999


Q ss_pred             hhhh
Q psy4795         206 STHL  209 (285)
Q Consensus       206 s~~l  209 (285)
                      ++++
T Consensus       293 gS~~  296 (735)
T KOG3626|consen  293 GSFC  296 (735)
T ss_pred             HHHH
Confidence            9874

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=93.61  E-value=6.7  Score=37.14  Aligned_cols=197  Identities=14%  Similarity=0.129  Sum_probs=111.2

Q ss_pred             ceeeecccchHHHHHHHHHHHHHHHHHHHhhhHhhhCch-HHHHHHHHHHHHHHHHHHhcccCCCCcch--HHHHhh---
Q psy4795           8 YISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRS-PLMALGFIVHCCLIWILVVWRPHPNNPKI--FFTISG---   81 (285)
Q Consensus         8 ~~~c~~g~d~~G~il~~~gi~~~~~a~~~G~l~~~~G~~-~~~~~g~~~~~~~l~~fl~~e~~~~~p~l--~~~~~~---   81 (285)
                      |-++++.-+.++.+..+--.++.+++...|.+++++||| ..+..++...+..+     ++..++.+.+  .-+...   
T Consensus        61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-----~k~~~~~~~L~~GRvlgGiaT  135 (354)
T PF05631_consen   61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-----TKHSSNYPVLLLGRVLGGIAT  135 (354)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-----HHhccccHHHHHHHHHHHHHH
Confidence            556667777888888888888999999999999999995 66555555544432     2333333322  222211   


Q ss_pred             ------hhhhhhhh--ccch--hHHHH---HHH--HHHHHHHHHHhhhhhhhcccC--ChhHHHHHHHHHHHHHHH-HHH
Q psy4795          82 ------LWGAYISC--ALGV--SSVGY---VMI--CFGVVNAICSLLFGTLMKFIG--RSPLMALGFIVHCCLIWI-LVV  143 (285)
Q Consensus        82 ------ft~~Y~~~--~lg~--~~~G~---v~~--~~gv~~~i~s~l~G~LsDriG--rk~~i~~g~~l~~i~~~~-l~~  143 (285)
                            |=.-++.+  ..|.  ++.+-   .+.  ..++..+..++++-.+.|+.|  ++.....+..+..++... ...
T Consensus       136 SLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~  215 (354)
T PF05631_consen  136 SLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKT  215 (354)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhc
Confidence                  11222222  2343  23231   122  234444555555556666654  466666666665555544 445


Q ss_pred             hCCCCCC------h-------HHHHH---HHHHHHHhhhhhhcccccceeeeccc----c--c--hhHhHHHHHHHHHHH
Q psy4795         144 WRPHPNN------P-------KIFFT---ISGLWGVGDAVWQTQVNGLYGTLFRR----N--K--EAAFSNFRLWESVGF  199 (285)
Q Consensus       144 ~~p~~~~------~-------~~~~~---~~~l~Gig~g~~~~~~~ali~~~fp~----~--~--~~afs~~~l~~~lG~  199 (285)
                      |..+..+      .       +..+.   -..++|+.++++...++..+-...|.    +  .  |..|+.+-..+-+|+
T Consensus       216 W~ENyg~~~~~~~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS  295 (354)
T PF05631_consen  216 WPENYGDTSSSSSLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGS  295 (354)
T ss_pred             ccccCCCcccccchHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHH
Confidence            6654321      0       01111   13467888888888888777665552    1  1  667777777777777


Q ss_pred             HHH-HHHhhhh
Q psy4795         200 VIA-YAYSTHL  209 (285)
Q Consensus       200 ~ig-~~~s~~l  209 (285)
                      .+- -..+..+
T Consensus       296 ~lf~~l~s~~~  306 (354)
T PF05631_consen  296 SLFSRLLSKSL  306 (354)
T ss_pred             HHHHHHHhCCC
Confidence            666 3444443

>TIGR00806 rfc RFC reduced folate carrier

Probab=93.42  E-value=0.14  Score=50.41  Aligned_cols=97  Identities=10%  Similarity=0.061  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHH--HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhccc
Q psy4795          95 SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGF--IVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQV  172 (285)
Q Consensus        95 ~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~--~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~  172 (285)
                      .-|.+-.+..+..++.++..|++-.++.|.-.+.++.  ++.....+++.    ..++.|+.++..++++..-....|..
T Consensus       299 yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~----~t~~Iw~~Y~~yvlf~~~y~flitia  374 (511)
T TIGR00806       299 YNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMS----QSHDIWVLYVTYVLFRGIYQFLVPIA  374 (511)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhh----cccchHHHHHHHHHHHHHHHHHHHHH
Confidence            4666777777888889999999976665533343333  33333332222    25789999999999999988888888


Q ss_pred             ccceeeeccccc-hhHhHHHHHHH
Q psy4795         173 NGLYGTLFRRNK-EAAFSNFRLWE  195 (285)
Q Consensus       173 ~ali~~~fp~~~-~~afs~~~l~~  195 (285)
                      ++-++....+++ +-.|+++.+.-
T Consensus       375 ~~~iA~~L~~~~~aLvFGiNtfvA  398 (511)
T TIGR00806       375 TFQIASSLSKELCALVFGINTFVA  398 (511)
T ss_pred             HHHHHHHhcccceEEEEecHHHHH
Confidence            888888887887 99999888763

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG3762|consensus

Probab=93.37  E-value=0.088  Score=52.26  Aligned_cols=65  Identities=22%  Similarity=0.346  Sum_probs=48.4

Q ss_pred             hhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHH-HHHHHHHHHHHHhCCCCC
Q psy4795          84 GAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGF-IVHCCLIWILVVWRPHPN  149 (285)
Q Consensus        84 ~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~-~l~~i~~~~l~~~~p~~~  149 (285)
                      +.|. ..+|+  .+.|.++..-+++.+++.|+.|.++||+-+++..++|. +....+.+++.+..|.+.
T Consensus        35 ~vy~-kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv~P~~~  102 (618)
T KOG3762|consen   35 AVYF-KQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFVPPVDK  102 (618)
T ss_pred             HHHH-HHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeeccCccc
Confidence            3443 34676  69999999999999999999999999998877666554 455555555555555443

>COG3619 Predicted membrane protein [Function unknown]

Probab=92.62  E-value=7  Score=34.66  Aligned_cols=139  Identities=12%  Similarity=0.116  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHhhhhhhhcccCCh--h-HHH-HHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhccccc
Q psy4795          99 VMICFGVVNAICSLLFGTLMKFIGRS--P-LMA-LGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNG  174 (285)
Q Consensus        99 v~~~~gv~~~i~s~l~G~LsDriGrk--~-~i~-~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~a  174 (285)
                      .....++...+.+.+.+.+..|..+|  . ... ...++........-++.+..++........+..|+-++.+......
T Consensus        59 ~~~~~pii~Fv~Gv~~~~~~~r~~~~~~~~~l~~~~~ll~~~v~~~~~~~p~~~~~~~~~il~~f~mg~Qnasf~k~~g~  138 (226)
T COG3619          59 VLLLLPILAFVLGVAAAELISRRATRSFIPVLLLVSLLLALIALLALGFIPESSPDFVAVILVAFAMGIQNASFRKVGGA  138 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            33444444444445555544443333  2 222 2222222222233344434445555566666677655555444333


Q ss_pred             ceeeec-----------------cccc-hhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4795         175 LYGTLF-----------------RRNK-EAAFSNFRLWESVGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVRH  236 (285)
Q Consensus       175 li~~~f-----------------p~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~~~~l~il~~~lv~~~v~~~~~e~~~  236 (285)
                      -++..+                 ++|+ ..--+..++.--++++.|...|+.++.....+.+.+....-...+..+....
T Consensus       139 ~~~~t~~TGnl~~~~~~l~~~l~~k~~~~~~~~~~~~~~il~f~~GAi~g~ll~~~~g~~al~~~~~~i~~~~~~~~~~~  218 (226)
T COG3619         139 PYGTTYVTGNLKSAGRGLGRYLSGKDKEKLRDWLIYLSLILSFIVGAICGALLTLFFGLKALWVVAALILAVYLLALFDL  218 (226)
T ss_pred             cccchhhhhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            333222                 2222 1222345555567888888889888877665555555544444444444443


Q ss_pred             H
Q psy4795         237 M  237 (285)
Q Consensus       237 ~  237 (285)
                      +
T Consensus       219 ~  219 (226)
T COG3619         219 R  219 (226)
T ss_pred             h
Confidence            3

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=91.32  E-value=0.73  Score=45.52  Aligned_cols=28  Identities=11%  Similarity=0.116  Sum_probs=21.3

Q ss_pred             ccccchhHhHHHHHHHHHHHHHHHHHhh
Q psy4795         180 FRRNKEAAFSNFRLWESVGFVIAYAYST  207 (285)
Q Consensus       180 fp~~~~~afs~~~l~~~lG~~ig~~~s~  207 (285)
                      -|+|.+.|...+..-||+|..+++..--
T Consensus       148 s~~n~~~ASTcqtvG~~~Gyfls~tvFl  175 (544)
T PF13000_consen  148 SPENVGYASTCQTVGQTAGYFLSFTVFL  175 (544)
T ss_pred             ChhhcchHHHHHHhHhhhhHHHHHHHHH
Confidence            4667788888888888888888776543

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=91.24  E-value=17  Score=36.07  Aligned_cols=112  Identities=14%  Similarity=0.050  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcccCCh---h----HHHHHHHHHHHHHHHHHHh---CC---CCCChHHHHHHHHHHH
Q psy4795          96 VGYVMICFGVVNAICSLLFGTLMKFIGRS---P----LMALGFIVHCCLIWILVVW---RP---HPNNPKIFFTISGLWG  162 (285)
Q Consensus        96 ~G~v~~~~gv~~~i~s~l~G~LsDriGrk---~----~i~~g~~l~~i~~~~l~~~---~p---~~~~~~~~~~~~~l~G  162 (285)
                      .++.-...++.-++.+|+.-++--|.+|+   +    -+-+|..+...+++.+...   ..   ..-++++.....++.+
T Consensus       326 ~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s  405 (498)
T COG3104         326 PAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQS  405 (498)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence            45666677777777777766665553332   1    1345556666655543322   21   1245677788899999


Q ss_pred             Hhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhh
Q psy4795         163 VGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYST  207 (285)
Q Consensus       163 ig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~  207 (285)
                      +|.=+..+.-.++...+.|+.- +.+.+++-+....|..++-.+++
T Consensus       406 ~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~  451 (498)
T COG3104         406 FGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG  451 (498)
T ss_pred             HHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence            9999999999999999999876 89999999999999998877776

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=90.97  E-value=4.8  Score=39.87  Aligned_cols=101  Identities=16%  Similarity=0.326  Sum_probs=59.5

Q ss_pred             HHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHH-HHhCCCC-----------------------------CChHHHHHH
Q psy4795         108 AICSLLFGTLMKFIGRSPLMALGFIVHCCLIWIL-VVWRPHP-----------------------------NNPKIFFTI  157 (285)
Q Consensus       108 ~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l-~~~~p~~-----------------------------~~~~~~~~~  157 (285)
                      ++...+..++++|++|+++.-.........+.+. +..-|+.                             ++..++++.
T Consensus        73 ~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~  152 (491)
T PF03219_consen   73 ILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVM  152 (491)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence            4555567889999999887665443333322221 1111221                             112345666


Q ss_pred             HHHHH-Hhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         158 SGLWG-VGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       158 ~~l~G-ig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      .=+|| +..+.   ...++..+.++.++ .+-++.+...-|+|..++-.+...++.
T Consensus       153 aElwgsvvlSl---LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  153 AELWGSVVLSL---LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666 22231   12355667776665 788999999999998888766666555

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=90.89  E-value=2.2  Score=41.49  Aligned_cols=110  Identities=13%  Similarity=0.133  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccCCh-hHHHHHHHHHHHHHHHHHH-hCC-C------CCChHHHHHHHHHHHHhhhhh
Q psy4795          98 YVMICFGVVNAICSLLFGTLMKFIGRS-PLMALGFIVHCCLIWILVV-WRP-H------PNNPKIFFTISGLWGVGDAVW  168 (285)
Q Consensus        98 ~v~~~~gv~~~i~s~l~G~LsDriGrk-~~i~~g~~l~~i~~~~l~~-~~p-~------~~~~~~~~~~~~l~Gig~g~~  168 (285)
                      ....++.++..+|-.+..+..- -++| +.+.+..++-.+.+.++++ ... +      -++-+..++..+++|+.+|..
T Consensus       311 i~~~~fNvgD~vGR~~~~~~~~-p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~  389 (437)
T TIGR00939       311 ICFLLFNLFDWLGRSLTSKFMW-PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYL  389 (437)
T ss_pred             HHHHHHHHHHHHHhhhhheeEe-eCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHH
Confidence            6777888999998886654321 1222 1333444444443322222 211 0      023466667799999999998


Q ss_pred             hcccccceeeeccc-cchhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795         169 QTQVNGLYGTLFRR-NKEAAFSNFRLWESVGFVIAYAYSTH  208 (285)
Q Consensus       169 ~~~~~ali~~~fp~-~~~~afs~~~l~~~lG~~ig~~~s~~  208 (285)
                      .+.......+..++ +++.|..+..++-++|.++|..++-.
T Consensus       390 ~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~  430 (437)
T TIGR00939       390 GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL  430 (437)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88777777777654 45899999999999999988877643

>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []

Probab=90.88  E-value=1.9  Score=37.29  Aligned_cols=15  Identities=13%  Similarity=0.118  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHHhHH
Q psy4795         227 CGYVIVEVRHMMKAR  241 (285)
Q Consensus       227 v~~~~~e~~~~~~~~  241 (285)
                      .+..+.|+..++..+
T Consensus       152 aG~~YAe~~~~~~~~  166 (196)
T PF08229_consen  152 AGQWYAERKDAKELE  166 (196)
T ss_pred             hhHHHHhhhhHHHHH
Confidence            344446655554443

Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=90.71  E-value=2.1  Score=41.17  Aligned_cols=81  Identities=6%  Similarity=0.032  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhcccccce
Q psy4795          97 GYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLY  176 (285)
Q Consensus        97 G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali  176 (285)
                      |.+..+-.+=..+.-++.-+..+|+.-+.-+.....+..++++...+    .++.++-++...+.+++.|.-....-++ 
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~----~~~v~~~l~Gv~las~ssg~GE~tfL~l-  136 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAF----SPSVWVRLLGVVLASLSSGLGEVTFLSL-  136 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheee----ccchhHHHHHHHHHhhhhhhhHHHHHHH-
Confidence            33444433444444455556777876555455555666666655433    3455665665666666666554444343 


Q ss_pred             eeeccc
Q psy4795         177 GTLFRR  182 (285)
Q Consensus       177 ~~~fp~  182 (285)
                      ...||+
T Consensus       137 t~~y~~  142 (402)
T PF02487_consen  137 THFYGK  142 (402)
T ss_pred             HHhcCc
Confidence            334544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1

Probab=90.48  E-value=9.6  Score=35.81  Aligned_cols=40  Identities=18%  Similarity=0.105  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCChHHHH
Q psy4795         215 LYVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKAAA  254 (285)
Q Consensus       215 l~il~~~lv~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~  254 (285)
                      +.....+.+.-.+.|..+.+...-.+||..-+.-++|+++
T Consensus       230 l~~sl~l~~~~~l~~~l~~Rwl~v~~RRLA~~Ra~~kR~~  269 (340)
T PF12794_consen  230 LILSLYLLLGWLLVYQLILRWLLVARRRLAYERAKEKRAE  269 (340)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555666666666655555555433332445554

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=89.75  E-value=2.8  Score=31.34  Aligned_cols=53  Identities=15%  Similarity=0.187  Sum_probs=44.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHH
Q psy4795          91 LGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVV  143 (285)
Q Consensus        91 lg~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~  143 (285)
                      +..++.|++-...-++..+|++...++.+|.++++.+..+.+...+....+-+
T Consensus        24 ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~   76 (85)
T PF06779_consen   24 LSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL   76 (85)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            34478999999999999999999999999988888888888887776665544

Note that many members are hypothetical proteins.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=88.34  E-value=28  Score=34.37  Aligned_cols=53  Identities=13%  Similarity=0.184  Sum_probs=34.9

Q ss_pred             HHHHHHHHhhhhhhcccccceeeeccccc--hhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795         156 TISGLWGVGDAVWQTQVNGLYGTLFRRNK--EAAFSNFRLWESVGFVIAYAYSTH  208 (285)
Q Consensus       156 ~~~~l~Gig~g~~~~~~~ali~~~fp~~~--~~afs~~~l~~~lG~~ig~~~s~~  208 (285)
                      +...+.|+.....+..--+.+.+.+|++.  .+-++.+..+.|+...+...+++.
T Consensus       271 ~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~  325 (472)
T TIGR00769       271 LLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGN  325 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556777777777777788888887643  555567777777777555444433

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=87.58  E-value=1.1  Score=42.19  Aligned_cols=17  Identities=18%  Similarity=0.352  Sum_probs=8.0

Q ss_pred             HHHHHHHhhhhhhhccc
Q psy4795         105 VVNAICSLLFGTLMKFI  121 (285)
Q Consensus       105 v~~~i~s~l~G~LsDri  121 (285)
                      +..++.-.+.|+++.|.
T Consensus         6 i~~i~~ii~~G~~~~~~   22 (385)
T PF03547_consen    6 ILPIFLIILLGYLLGRF   22 (385)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            33344444455555543

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed

Probab=87.50  E-value=29  Score=33.72  Aligned_cols=15  Identities=13%  Similarity=0.490  Sum_probs=8.5

Q ss_pred             HHHHHHHHHhhhHhhhCc
Q psy4795          28 VNAICSLLFGTLMKFIGR   45 (285)
Q Consensus        28 ~~~~~a~~~G~l~~~~G~   45 (285)
                      ...+.++..|.   |+|=
T Consensus         7 ~~~~~~~~~g~---~~~~   21 (433)
T PRK09412          7 IIVLLAIFLGA---RLGG   21 (433)
T ss_pred             HHHHHHHHHhH---hhhH
Confidence            34456666676   5543

>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins

Probab=86.50  E-value=0.88  Score=38.26  Aligned_cols=30  Identities=23%  Similarity=0.263  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q psy4795         213 MKLYVMGVVLVTGFCGYVIVEVRHMMKARR  242 (285)
Q Consensus       213 ~~l~il~~~lv~~~v~~~~~e~~~~~~~~~  242 (285)
                      --+|++.++..+.++.|.+=.+|.+|++||
T Consensus        96 R~~~Vl~g~s~l~i~yfvir~~R~r~~~rk  125 (163)
T PF06679_consen   96 RALYVLVGLSALAILYFVIRTFRLRRRNRK  125 (163)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            346777777777777777766777775554

Their function is unknown.

>KOG2325|consensus

Probab=86.41  E-value=1.2  Score=43.83  Aligned_cols=76  Identities=17%  Similarity=0.263  Sum_probs=51.7

Q ss_pred             HHHHHHhhhhhhcccccceeeec-cccchhHhHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHHH
Q psy4795         158 SGLWGVGDAVWQTQVNGLYGTLF-RRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR---MKLYVMGVVLVTGFCGYVIVE  233 (285)
Q Consensus       158 ~~l~Gig~g~~~~~~~ali~~~f-p~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~---~~l~il~~~lv~~~v~~~~~e  233 (285)
                      ..++|++.-..++...+++++.. |++++.+-+.+....+.+..+|..+++.....   ...+.+....++..+.+..+-
T Consensus       395 i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~  474 (488)
T KOG2325|consen  395 IVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVF  474 (488)
T ss_pred             hheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence            45677777777888888888887 55668888899999999999998887775432   224444444444444444333

>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100

Probab=85.23  E-value=14  Score=35.18  Aligned_cols=19  Identities=5%  Similarity=0.002  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy4795         214 KLYVMGVVLVTGFCGYVIV  232 (285)
Q Consensus       214 ~l~il~~~lv~~~v~~~~~  232 (285)
                      +..+-..+.++..++....
T Consensus       302 ~~~i~~~la~i~~i~l~~~  320 (374)
T PF01528_consen  302 HTGIAINLAVIAIICLIMM  320 (374)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444333

Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=85.09  E-value=0.27  Score=45.30  Aligned_cols=26  Identities=31%  Similarity=0.395  Sum_probs=0.0

Q ss_pred             HHHHHHhhhhhhcccccceeeeccccc
Q psy4795         158 SGLWGVGDAVWQTQVNGLYGTLFRRNK  184 (285)
Q Consensus       158 ~~l~Gig~g~~~~~~~ali~~~fp~~~  184 (285)
                      .++.|+++|..|+...++.+. +|++.
T Consensus         4 v~~~~~~~~~~q~s~~glas~-~p~~y   29 (309)
T PF01733_consen    4 VALIGFANAVLQSSLFGLASL-FPPKY   29 (309)
T ss_dssp             ---------------------------
T ss_pred             EEEEHhhhHHHhccHHHHHhc-CCHHH
Confidence            456788999999998888875 66544

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>smart00786 SHR3_chaperone ER membrane protein SH3

Probab=84.68  E-value=1.7  Score=37.45  Aligned_cols=15  Identities=13%  Similarity=0.180  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHhHH
Q psy4795         227 CGYVIVEVRHMMKAR  241 (285)
Q Consensus       227 v~~~~~e~~~~~~~~  241 (285)
                      .+..+.|++.++..+
T Consensus       152 aG~wYAer~~~~~~~  166 (196)
T smart00786      152 AGLWYAERKDAKQKE  166 (196)
T ss_pred             hhHHHHHHhHHHHHH
Confidence            444555555544433

This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.

>PF13974 YebO: YebO-like protein

Probab=84.57  E-value=1  Score=33.25  Aligned_cols=38  Identities=18%  Similarity=0.262  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHh---hhhhcCChHHHH
Q psy4795         217 VMGVVLVTGFCGYVIVEVRHMMKARR---QKRLAEDPKAAA  254 (285)
Q Consensus       217 il~~~lv~~~v~~~~~e~~~~~~~~~---~~~~~~~~~~~~  254 (285)
                      +.+.+++++++.++++-+-..|....   .++..+.+|+++
T Consensus         3 ~~~~~~lv~livWFFVnRaSvRANEQI~LL~~ileqQKrQn   43 (80)
T PF13974_consen    3 VSVLVLLVGLIVWFFVNRASVRANEQIELLEEILEQQKRQN   43 (80)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            34566778888888887644433322   333443455553

>TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein

Probab=83.89  E-value=44  Score=32.51  Aligned_cols=27  Identities=7%  Similarity=-0.150  Sum_probs=11.5

Q ss_pred             HHHHHHhhhhhhcccccceeeeccccc
Q psy4795         158 SGLWGVGDAVWQTQVNGLYGTLFRRNK  184 (285)
Q Consensus       158 ~~l~Gig~g~~~~~~~ali~~~fp~~~  184 (285)
                      .....++...-..+...........+.
T Consensus       110 PI~i~la~~lG~d~i~~~ai~~~aa~i  136 (430)
T TIGR00770       110 PVIAEVAKEQGIKPERPLSLAVVSSQI  136 (430)
T ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence            444455554444333333333333333

These proteins are members of th C4-Dicarboxylate Uptake (Dcu) Family (TC 2.A.13). Most proteins in this family have 12 GES predicted transmembrane regions; however one member has 10 experimentally determined transmembrane regions with both the N- and C-termini localized to the periplasm. The two Escherichia coli proteins, DcuA and DcuB, transport aspartate, malate, fumarate and succinate, and function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively.

>KOG1479|consensus

Probab=83.86  E-value=12  Score=36.17  Aligned_cols=110  Identities=15%  Similarity=0.076  Sum_probs=71.1

Q ss_pred             HHHHHHHH-HHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHH--h----CCCCCChHHHHHHHHHHHHhhhh
Q psy4795          95 SVGYVMIC-FGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVV--W----RPHPNNPKIFFTISGLWGVGDAV  167 (285)
Q Consensus        95 ~~G~v~~~-~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~--~----~p~~~~~~~~~~~~~l~Gig~g~  167 (285)
                      ..-..+.+ +-+...+|.+...++-++= ||.+.+ ..++-.+ +++++.  .    .+.-.+-++..+...++|+.+|-
T Consensus       283 y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i-~v~lR~l-fiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGY  359 (406)
T KOG1479|consen  283 YALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTI-PVLLRLL-FIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGY  359 (406)
T ss_pred             hHHHHHHHHhHHHHHhhhhhhhcccCCC-CceehH-HHHHHHH-HHHHHHHhccCCCCceecCchHHHHHHHHHHhccch
Confidence            44555555 8899999988877776653 333332 2333333 334333  1    11113346666778888999888


Q ss_pred             hhcccccceeeecccc-chhHhHHHHHHHHHHHHHHHHHhh
Q psy4795         168 WQTQVNGLYGTLFRRN-KEAAFSNFRLWESVGFVIAYAYST  207 (285)
Q Consensus       168 ~~~~~~ali~~~fp~~-~~~afs~~~l~~~lG~~ig~~~s~  207 (285)
                      ..+-...+-...+|++ ++.|..+..++-..|.+.|.+++-
T Consensus       360 ltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~  400 (406)
T KOG1479|consen  360 LTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSW  400 (406)
T ss_pred             HhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            8766666666666544 488888999999999999887763

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=82.54  E-value=14  Score=34.74  Aligned_cols=25  Identities=20%  Similarity=0.252  Sum_probs=12.6

Q ss_pred             hhhccch-hHHHHHHHHHHHHHHHHH
Q psy4795          87 ISCALGV-SSVGYVMICFGVVNAICS  111 (285)
Q Consensus        87 ~~~~lg~-~~~G~v~~~~gv~~~i~s  111 (285)
                      +...... +..|....+.|++..+.+
T Consensus       127 L~~ry~~~~~~gv~i~i~Gv~lv~~s  152 (334)
T PF06027_consen  127 LKRRYSWFHILGVLICIAGVVLVVVS  152 (334)
T ss_pred             HHhhhhHHHHHHHHHHHhhhhheeee
Confidence            3334444 456666666665554433

Some of the sequences in this family are annotated as putative membrane proteins.

>PTZ00370 STEVOR; Provisional

Probab=82.14  E-value=2.8  Score=38.25  Aligned_cols=49  Identities=14%  Similarity=0.069  Sum_probs=36.9

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q psy4795         197 VGFVIAYAYSTHLCARMKLYVMGVVLVTGFCGYVIVEVRHMMKARRQKR  245 (285)
Q Consensus       197 lG~~ig~~~s~~l~~~~~l~il~~~lv~~~v~~~~~e~~~~~~~~~~~~  245 (285)
                      .|.+.+.+.+.+.+...-..+++++.|+-.+.|+|+.+|.++.=|++.+
T Consensus       243 agtAAtaAsaaF~Pygiaalvllil~vvliilYiwlyrrRK~swkhe~k  291 (296)
T PTZ00370        243 AGTAASAASSAFYPYGIAALVLLILAVVLIILYIWLYRRRKNSWKHECK  291 (296)
T ss_pred             cchHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence            3456667777777777778888888999999999998777666555544

>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial

Probab=82.04  E-value=2.6  Score=28.75  Aligned_cols=37  Identities=24%  Similarity=0.297  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCChHHHHHHH
Q psy4795         216 YVMGVVLVTGFCGYVIVEVRHMMKARRQKRLAEDPKAAAIAA  257 (285)
Q Consensus       216 ~il~~~lv~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  257 (285)
                      +.+.+++++.+-+|+.--+|.+||.+|-     =+|-+++|.
T Consensus         5 f~~ti~lvv~LYgY~yhLYrsek~G~rd-----YEKY~~LAL   41 (56)
T TIGR02736         5 FAFTLLLVIFLYAYIYHLYRSQKKGERD-----YEKYANLAL   41 (56)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhcccccC-----HHHHhhhhc
Confidence            3455666677777777767766666432     245666664

Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.

>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component

Probab=80.60  E-value=1.4  Score=39.95  Aligned_cols=7  Identities=14%  Similarity=0.050  Sum_probs=3.6

Q ss_pred             hhhhhcc
Q psy4795         114 FGTLMKF  120 (285)
Q Consensus       114 ~G~LsDr  120 (285)
                      .-+.+||
T Consensus       120 ~~h~adk  126 (265)
T TIGR00822       120 FQHAADK  126 (265)
T ss_pred             HHHHHHH
Confidence            3455565

Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=80.54  E-value=0.43  Score=43.94  Aligned_cols=109  Identities=17%  Similarity=0.113  Sum_probs=3.2

Q ss_pred             HHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHH--H-hCCCC-------CChHHHHHHHHHHHHhhhhh
Q psy4795          99 VMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILV--V-WRPHP-------NNPKIFFTISGLWGVGDAVW  168 (285)
Q Consensus        99 v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~--~-~~p~~-------~~~~~~~~~~~l~Gig~g~~  168 (285)
                      ...++.++..+|..+.++.--+..+++.+.+..+.-.+. ++++  . ..|.+       ++-+..++..+++|+.+|..
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~f-iPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLF-IPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHH-HHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            345788888888887775421111233333333443332 2222  1 12210       12355667788999999998


Q ss_pred             hcccccceeeeccc-cchhHhHHHHHHHHHHHHHHHHHhhh
Q psy4795         169 QTQVNGLYGTLFRR-NKEAAFSNFRLWESVGFVIAYAYSTH  208 (285)
Q Consensus       169 ~~~~~ali~~~fp~-~~~~afs~~~l~~~lG~~ig~~~s~~  208 (285)
                      .+.......+..++ +++.+..+..++-++|.++|..+|-.
T Consensus       266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~  306 (309)
T PF01733_consen  266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL  306 (309)
T ss_dssp             -HHHH------------------------------------
T ss_pred             hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88877777777754 45899999999999999999877643

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []

Probab=80.52  E-value=8.9  Score=30.99  Aligned_cols=24  Identities=21%  Similarity=0.275  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Q psy4795         216 YVMGVVLVTGFCGYVIVEVRHMMK  239 (285)
Q Consensus       216 ~il~~~lv~~~v~~~~~e~~~~~~  239 (285)
                      .+...++++.-+.|..+.....++
T Consensus        89 ~i~g~~~~~~G~~~i~l~~~~~~~  112 (136)
T PF08507_consen   89 IIIGLLLFLVGVIYIILGFFCPIK  112 (136)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCC
Confidence            333333444444556666555544

In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].

>KOG4332|consensus

Probab=80.32  E-value=17  Score=33.83  Aligned_cols=108  Identities=12%  Similarity=0.162  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhccc--CChhHHHHHHHHHHHHHHH---HHHhCCCCCChHHHHHHHHHHHHhhhhhhc
Q psy4795          96 VGYVMICFGVVNAICSLLFGTLMKFI--GRSPLMALGFIVHCCLIWI---LVVWRPHPNNPKIFFTISGLWGVGDAVWQT  170 (285)
Q Consensus        96 ~G~v~~~~gv~~~i~s~l~G~LsDri--Grk~~i~~g~~l~~i~~~~---l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~  170 (285)
                      -|++...+.+.+++|+-+..++..|-  .-++.+.+...+....+.+   .....|...++..-++...++-.+-|++.|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            46777778888888888888877652  2345555555554444332   223345444555556666677788899999


Q ss_pred             ccccceeeeccccc-hhHhHHHHHHHHHHHHHHH
Q psy4795         171 QVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAY  203 (285)
Q Consensus       171 ~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~  203 (285)
                      .+.-+=.+..|++. ......+|.=-|+=.+++-
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvClvL  397 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVL  397 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhh
Confidence            88888778888764 6666677766676666654

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=80.10  E-value=43  Score=33.27  Aligned_cols=102  Identities=13%  Similarity=0.310  Sum_probs=58.2

Q ss_pred             HHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHH--HHHh------CCC-----------C------------CChHHH
Q psy4795         106 VNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWI--LVVW------RPH-----------P------------NNPKIF  154 (285)
Q Consensus       106 ~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~--l~~~------~p~-----------~------------~~~~~~  154 (285)
                      +.++..++.+++.++..|+++.-.-.......+++  ...+      +|+           +            ++...+
T Consensus        74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~  153 (509)
T COG3202          74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF  153 (509)
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence            56777788899999999888865544333333222  2222      121           0            123345


Q ss_pred             HHHHHHHHH-hhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         155 FTISGLWGV-GDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       155 ~~~~~l~Gi-g~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      +++.=+||- --+   --......+....++ .+=++.+++..|++..++-.+...+.
T Consensus       154 Yi~aELWgslV~S---~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~  208 (509)
T COG3202         154 YIMAELWGSLVLS---LLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLS  208 (509)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            666666662 111   112234456665555 67788888888888777666555543

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=80.03  E-value=5.2  Score=36.11  Aligned_cols=46  Identities=11%  Similarity=0.201  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4795         191 FRLWESVGFVIAYAYSTH---------LCARMKLYVMGVVLVTGFCGYVIVEVRH  236 (285)
Q Consensus       191 ~~l~~~lG~~ig~~~s~~---------l~~~~~l~il~~~lv~~~v~~~~~e~~~  236 (285)
                      .-+|.+.....|.+.|-+         ....+.-|+-+++.+++.+.|..++-..
T Consensus        85 ~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~  139 (254)
T PF07857_consen   85 MLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE  139 (254)
T ss_pred             HHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence            345566666777776643         2345668888889999999998875444

The region concerned is approximately 280 residues long.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	285
3m9d_G	68	Prokaryotic ubiquitin-like protein PUP; alpha heli	9e-04

>3m9d_G Prokaryotic ubiquitin-like protein PUP; alpha helix coil COIL, 5 beta-strand barrel, ATP-binding, CH nucleotide-binding, proteasome; 4.50A {Mycobacterium tuberculosis} Length = 68

 Score = 36.1 bits (82), Expect = 9e-04
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 236 HMMKARRQKRLA----EDPKAAAIAAAEAKAAQVVEETDDERDDIDD 278
           HMM   + KR      +D  A + AA + +  ++ EETDD  D+IDD
Sbjct: 3   HMMAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDD 49

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	285
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.58
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.46
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.43
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.4
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.34
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.29
2xut_A	524	Proton/peptide symporter family protein; transport	99.28
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.28
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.22
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.09
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.04
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.03
2xut_A	524	Proton/peptide symporter family protein; transport	98.98
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.4

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.58  E-value=3.3e-13  Score=125.87  Aligned_cols=151  Identities=14%  Similarity=0.030  Sum_probs=116.2

Q ss_pred             hhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhccc--CChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHH
Q psy4795          82 LWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFI--GRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTI  157 (285)
Q Consensus        82 ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDri--Grk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~  157 (285)
                      +.|.|+++.+|.  .+.|+.....+++.++++++.|+++||+  |||+.+..+..+.......++...+ +.+.+...+.
T Consensus       274 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  352 (451)
T 1pw4_A          274 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP-AGNPTVDMIC  352 (451)
T ss_dssp             HHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCC-TTCHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhc-ccCHHHHHHH
Confidence            347788887777  5688999999999999999999999999  9999988877665522223333333 3466777777


Q ss_pred             HHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHH-HHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHHHH
Q psy4795         158 SGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESV-GFVIAYAYSTHLCA----RMKLYVMGVVLVTGFCGYVI  231 (285)
Q Consensus       158 ~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~l-G~~ig~~~s~~l~~----~~~l~il~~~lv~~~v~~~~  231 (285)
                      .++.|++.+..++..++++.+.+|++. +.+.++++..+++ |..++..+.+.+..    +.-.++..++.+++.+.+.+
T Consensus       353 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          353 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999888999999999875 9999999999999 99999998887644    23345555555666655555


Q ss_pred             HH
Q psy4795         232 VE  233 (285)
Q Consensus       232 ~e  233 (285)
                      ..
T Consensus       433 ~~  434 (451)
T 1pw4_A          433 VM  434 (451)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.46  E-value=3.5e-13  Score=125.37  Aligned_cols=123  Identities=16%  Similarity=0.118  Sum_probs=107.0

Q ss_pred             hhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHh
Q psy4795          87 ISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVG  164 (285)
Q Consensus        87 ~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig  164 (285)
                      +++.+|.  .++|++...+.++..+++++.|+++||+|||+++..+.++..++.+...... ..++++.+++..++.|++
T Consensus        52 ~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~l~G~~  130 (438)
T 3o7q_A           52 FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA-EIMNYTLFLVGLFIIAAG  130 (438)
T ss_dssp             HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHHHhh
Confidence            4455676  6899999999999999999999999999999999999998888776652211 145688889999999999


Q ss_pred             hhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         165 DAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       165 ~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      .+...+..++++.+.+|+++ +.+.+.++...++|..++..+++.+.
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          131 LGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             HHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998766 88999999999999999999988876

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.43  E-value=1.4e-12  Score=123.69  Aligned_cols=150  Identities=18%  Similarity=0.240  Sum_probs=118.7

Q ss_pred             Hhhhhhhhhhhc-----cch--hHHHHHHHHHHHHHHHHHhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy4795          79 ISGLWGAYISCA-----LGV--SSVGYVMICFGVVNAICSLLFGTLMKF-IGRSPLMALGFIVHCCLIWILVVWRPHPNN  150 (285)
Q Consensus        79 ~~~ft~~Y~~~~-----lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDr-iGrk~~i~~g~~l~~i~~~~l~~~~p~~~~  150 (285)
                      ...+.+.|+++.     +|.  .++|++...+.++..++++++|+++|| +|||+++..+.++..++.+.+..    .++
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~----~~~  107 (491)
T 4aps_A           32 MRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL----PFG  107 (491)
T ss_dssp             HHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS----CCS
T ss_pred             HHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH----hhh
Confidence            345567777776     787  579999999999999999999999999 89999999999988887766544    345


Q ss_pred             hHHHHHHHHHHHHhhhhhhcccccceeeecccc---chhHhHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHH
Q psy4795         151 PKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRN---KEAAFSNFRLWESVGFVIAYAYSTHLCA----RMKLYVMGVVLV  223 (285)
Q Consensus       151 ~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~---~~~afs~~~l~~~lG~~ig~~~s~~l~~----~~~l~il~~~lv  223 (285)
                      .+.+++..++.|++.+...+..++++.+.+|++   ++.+++.++...++|..+|..+++.+..    ++-.++..+..+
T Consensus       108 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~  187 (491)
T 4aps_A          108 ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMF  187 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            677888899999999999999999999999754   3568888999999999999999888654    333444444444


Q ss_pred             HHHHHHHHH
Q psy4795         224 TGFCGYVIV  232 (285)
Q Consensus       224 ~~~v~~~~~  232 (285)
                      ++.+.+...
T Consensus       188 ~~~~~~~~~  196 (491)
T 4aps_A          188 IGLLVYYFG  196 (491)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            454444433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.40  E-value=1.8e-12  Score=122.79  Aligned_cols=128  Identities=13%  Similarity=0.075  Sum_probs=98.2

Q ss_pred             hhhhhhccchh--HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHH-----HHHHHHHHHHHHHHHhC-----CCCCCh
Q psy4795          84 GAYISCALGVS--SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMA-----LGFIVHCCLIWILVVWR-----PHPNNP  151 (285)
Q Consensus        84 ~~Y~~~~lg~~--~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~-----~g~~l~~i~~~~l~~~~-----p~~~~~  151 (285)
                      +.|.++..+.+  ..++.....+++..+++++.|+++||+|||+...     .+.++..+++..+....     +.+.+.
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (491)
T 4aps_A          307 ATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSP  386 (491)
T ss_dssp             HHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCT
T ss_pred             HHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccH
Confidence            55666655553  5777888899999999999999999999986654     66666665554332211     223355


Q ss_pred             HHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         152 KIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       152 ~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      +...+..++.|++.+..++..+++..+.+|++. +.+.++++..+++|..++..+.+.+..
T Consensus       387 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~  447 (491)
T 4aps_A          387 LWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA  447 (491)
T ss_dssp             HHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            677777889999999999999999999999875 999999999999999999999887643

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.34  E-value=2e-12  Score=120.52  Aligned_cols=129  Identities=9%  Similarity=0.087  Sum_probs=105.5

Q ss_pred             hhhhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q psy4795          83 WGAYISCALGVSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWG  162 (285)
Q Consensus        83 t~~Y~~~~lg~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~G  162 (285)
                      .|.+.++.....+.|++...+.++..+++++.|+++||+|||+++..+.++..++.+...+.....++++.+++..++.|
T Consensus        51 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G  130 (451)
T 1pw4_A           51 MPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCG  130 (451)
T ss_dssp             HHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHH
T ss_pred             HHHHHHHhccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHH
Confidence            34444443233579999999999999999999999999999999999999888877665441000134577788899999


Q ss_pred             Hhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         163 VGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       163 ig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      ++.+...+..++++.+.+|+++ +.+++..+...++|..+|..+++.+..
T Consensus       131 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  180 (451)
T 1pw4_A          131 WFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  180 (451)
T ss_dssp             HHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998655 999999999999999999999877543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.29  E-value=9.3e-11  Score=108.92  Aligned_cols=127  Identities=10%  Similarity=-0.064  Sum_probs=100.3

Q ss_pred             hhhhh-hhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q psy4795          82 LWGAY-ISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTIS  158 (285)
Q Consensus        82 ft~~Y-~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~  158 (285)
                      +.|.| +++.+|.  .+.|+......++..++.++.|+++||+|||+++..+.++..++.+.+.. .   ++.+. ....
T Consensus       280 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~-~~~~  354 (438)
T 3o7q_A          280 YLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF-A---GGHVG-LIAL  354 (438)
T ss_dssp             HHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-C---CHHHH-HHHH
T ss_pred             HHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH-c---CCcHH-HHHH
Confidence            45788 8887777  57889999999999999999999999999999999988877776655444 2   23333 3445


Q ss_pred             HHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy4795         159 GLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCARMK  214 (285)
Q Consensus       159 ~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~~~  214 (285)
                      .+.|++.+...+..+++..+.+|++++.+.+... ...+|..++..+.+.+.....
T Consensus       355 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g  409 (438)
T 3o7q_A          355 TLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG  409 (438)
T ss_dssp             HHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence            7889999999999999989999987766666655 667999999988888766543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.28  E-value=1.4e-11  Score=117.77  Aligned_cols=129  Identities=18%  Similarity=0.182  Sum_probs=107.5

Q ss_pred             hhhhhhhhhhccc------h--hHHHHHHHHHHHHHHHHHhhhhhhhccc-CChhHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy4795          80 SGLWGAYISCALG------V--SSVGYVMICFGVVNAICSLLFGTLMKFI-GRSPLMALGFIVHCCLIWILVVWRPHPNN  150 (285)
Q Consensus        80 ~~ft~~Y~~~~lg------~--~~~G~v~~~~gv~~~i~s~l~G~LsDri-Grk~~i~~g~~l~~i~~~~l~~~~p~~~~  150 (285)
                      ..+.+.|+++.+|      .  .+.|++...+.++..++++++|+++||+ |||+++..+.++..++.+...+.   +.+
T Consensus        32 ~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~---~~~  108 (524)
T 2xut_A           32 RNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF---EHS  108 (524)
T ss_dssp             HHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT---SSC
T ss_pred             HHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh---ccc
Confidence            4456777777777      6  5799999999999999999999999999 99999999988888777665542   126


Q ss_pred             hHHHHHHHHHHHHhhhhhhcccccceeeeccccc-hhH---hHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         151 PKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNK-EAA---FSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       151 ~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~-~~a---fs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      .+.+++..++.|++.+...+..++++.+.+|+++ +.+   ++.++...++|..+|..+++.+..
T Consensus       109 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~  173 (524)
T 2xut_A          109 VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK  173 (524)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH
T ss_pred             HHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7788888999999999999999999999998765 544   445999999999999998877653

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.28  E-value=5.4e-12  Score=119.42  Aligned_cols=116  Identities=12%  Similarity=-0.005  Sum_probs=98.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCC--------------CCCChHHHHHHHH
Q psy4795          94 SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRP--------------HPNNPKIFFTISG  159 (285)
Q Consensus        94 ~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p--------------~~~~~~~~~~~~~  159 (285)
                      .+.|++...+.++.++|++++|+++||+|||+++.++.++..++.+...+...              -.++++.+++..+
T Consensus        55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~  134 (491)
T 4gc0_A           55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRI  134 (491)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHH
Confidence            35778888999999999999999999999999999999988887766543110              1356788899999


Q ss_pred             HHHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhh
Q psy4795         160 LWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHL  209 (285)
Q Consensus       160 l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l  209 (285)
                      +.|++.|...+..+.+++|..|+++ +...+.++....+|..++...+..+
T Consensus       135 l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  185 (491)
T 4gc0_A          135 IGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFI  185 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhh
Confidence            9999999999999999999998876 8899999999999999888877554

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.22  E-value=6.7e-12  Score=114.81  Aligned_cols=119  Identities=20%  Similarity=0.275  Sum_probs=104.3

Q ss_pred             hhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhh
Q psy4795          88 SCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGD  165 (285)
Q Consensus        88 ~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~  165 (285)
                      .+.+|.  .+.|++...+.++..+++++.|+++||+|||+++..+.++..++.+.....    ++.+.+++..++.|++.
T Consensus        27 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~l~g~~~  102 (375)
T 2gfp_A           27 ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT----SSLTVLIAASAMQGMGT  102 (375)
T ss_dssp             HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHH
Confidence            345666  578999999999999999999999999999999999998888877665542    46778888899999999


Q ss_pred             hhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         166 AVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       166 g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      +..++..++++.|.+|+++ +.+++.++...++|..++..+++.+.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  148 (375)
T 2gfp_A          103 GVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD  148 (375)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            9999999999999998654 99999999999999999999988864

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.09  E-value=6.1e-09  Score=98.33  Aligned_cols=116  Identities=13%  Similarity=0.026  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHh-hhhhhcccc
Q psy4795          95 SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVG-DAVWQTQVN  173 (285)
Q Consensus        95 ~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig-~g~~~~~~~  173 (285)
                      .........++...+++++++++.||+|||+.++.+.....++.+.+........+.+...+...+...+ ...+.+..+
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (491)
T 4gc0_A          313 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCW  392 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3445667788899999999999999999999999888877766554322211122223333323332222 223445567


Q ss_pred             cceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         174 GLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       174 ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      .+.+|+||++. +.+.++.+..+++|..++....+.+.
T Consensus       393 ~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~  430 (491)
T 4gc0_A          393 VLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMD  430 (491)
T ss_dssp             HHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHC
T ss_pred             HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999876 89999999999999888876665543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.04  E-value=2.4e-10  Score=107.00  Aligned_cols=124  Identities=10%  Similarity=0.098  Sum_probs=94.6

Q ss_pred             hhhhhhccc-----hhHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q psy4795          84 GAYISCALG-----VSSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTIS  158 (285)
Q Consensus        84 ~~Y~~~~lg-----~~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~  158 (285)
                      |.|+++.++     ....|+......++++++.++.|+++||+|||+++..+..+..+..+.+..    .++.+.+.+..
T Consensus       244 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~  319 (417)
T 2cfq_A          244 ANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF----ATSALEVVILK  319 (417)
T ss_dssp             HHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT----CCSHHHHHHHT
T ss_pred             HHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH----hccHHHHHHHH
Confidence            456655444     234677788888899999999999999999999998887776665433322    23455666666


Q ss_pred             HHHHHhhhhhhcccccceeeeccccc-hhHhHH-HHHHHHHHHHHHHHHhhhhhH
Q psy4795         159 GLWGVGDAVWQTQVNGLYGTLFRRNK-EAAFSN-FRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       159 ~l~Gig~g~~~~~~~ali~~~fp~~~-~~afs~-~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      .+.+++.+.+++...++..+.+|++. +++.+. ++..+++|..++..+++.+..
T Consensus       320 ~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~  374 (417)
T 2cfq_A          320 TLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE  374 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH
Confidence            67788877788778889999998876 888887 689999999999999887654

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.03  E-value=1.8e-10  Score=105.23  Aligned_cols=192  Identities=13%  Similarity=0.045  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhhhCchHHHHHHHHHHHHHHH-HHHh-cccCCCC--------cchH------H---H
Q psy4795          18 VGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIW-ILVV-WRPHPNN--------PKIF------F---T   78 (285)
Q Consensus        18 ~G~il~~~gi~~~~~a~~~G~l~~~~G~~~~~~~g~~~~~~~l~-~fl~-~e~~~~~--------p~l~------~---~   78 (285)
                      .|......+++..+..++.|.+.++.|++..++...+..++..+ .... .|+++++        ....      +   .
T Consensus       126 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (375)
T 2gfp_A          126 NSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYL  205 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCCCTTTCSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccccHHHHHHHHhcCcchHHHH
Confidence            45566677778888888888888888887555544444433322 2222 2221111        0000      0   0


Q ss_pred             H------------hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHH-HHHHHHH-HH
Q psy4795          79 I------------SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIV-HCCLIWI-LV  142 (285)
Q Consensus        79 ~------------~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l-~~i~~~~-l~  142 (285)
                      .            ..+.|.|+++.+|.  .+.|+.....+++..+++++.|+++||+||+  ...+... ...+... ..
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~  283 (375)
T 2gfp_A          206 LMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIP  283 (375)
T ss_dssp             HHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            0            11336777777777  4688999999999999999999999999873  2333322 2222211 11


Q ss_pred             HhCCCCCChHHHHHHHHHHHHhhhhhhcccccceeeeccccchhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q psy4795         143 VWRPHPNNPKIFFTISGLWGVGDAVWQTQVNGLYGTLFRRNKEAAFSNFRLWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       143 ~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~ali~~~fp~~~~~afs~~~l~~~lG~~ig~~~s~~l~~~  212 (285)
                      ...+ +++.+..++...+.|++.+..++..+++..+.+|++++++.++++..+++|..++..+.+.+...
T Consensus       284 ~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  352 (375)
T 2gfp_A          284 DWFG-VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQT  352 (375)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred             hhhc-cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            1111 12456666778889999999999999999999996669999999999999999998888776543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.98  E-value=3e-09  Score=101.52  Aligned_cols=116  Identities=8%  Similarity=-0.041  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhh----cccCC----hhHHHHHHHHHHHHHHHHHHhC-----CCCCChHHHHHHHHHHH
Q psy4795          96 VGYVMICFGVVNAICSLLFGTLM----KFIGR----SPLMALGFIVHCCLIWILVVWR-----PHPNNPKIFFTISGLWG  162 (285)
Q Consensus        96 ~G~v~~~~gv~~~i~s~l~G~Ls----DriGr----k~~i~~g~~l~~i~~~~l~~~~-----p~~~~~~~~~~~~~l~G  162 (285)
                      .+.+....+++..+++++.|++.    ||.|+    ++.+..+.++..++.+.+....     +...+.+...+..++.|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  416 (524)
T 2xut_A          337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT  416 (524)
T ss_dssp             HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence            55666666677778888888875    55443    2456666666666554433221     01235566677788999


Q ss_pred             Hhhhhhhcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         163 VGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       163 ig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      ++.+..++..+++..+.+|++. +.+.++++..+++|..+|..+.+.+..
T Consensus       417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~  466 (524)
T 2xut_A          417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS  466 (524)
T ss_dssp             HHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999765 999999999999999999998877643

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.40  E-value=1e-08  Score=95.86  Aligned_cols=127  Identities=13%  Similarity=0.163  Sum_probs=82.2

Q ss_pred             hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHH--hCC--CCCChHH
Q psy4795          80 SGLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVV--WRP--HPNNPKI  153 (285)
Q Consensus        80 ~~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~--~~p--~~~~~~~  153 (285)
                      ..|.|.|+++.+|.  .++|+++..+.++..++++++|+++||+|||+++.++..+..+.......  ..+  ..+.   
T Consensus        27 ~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---  103 (417)
T 2cfq_A           27 FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNI---  103 (417)
T ss_dssp             TTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTC---
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            35678888887777  57999999999999999999999999999999999887765432111110  000  0011   


Q ss_pred             HHHHHHHHHHhhhhhhcccccceeeecc---ccchhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         154 FFTISGLWGVGDAVWQTQVNGLYGTLFR---RNKEAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       154 ~~~~~~l~Gig~g~~~~~~~ali~~~fp---~~~~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                       .....+.|++.+...+...+...+..+   ++++.+++..+.+.++|.+++..+++.+.
T Consensus       104 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~  162 (417)
T 2cfq_A          104 -LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF  162 (417)
T ss_dssp             -CHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence             111222233333333333333333333   23366777888888999999998887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	285
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.48
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.39
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.35
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.02

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=7e-12  Score=113.68  Aligned_cols=157  Identities=14%  Similarity=0.036  Sum_probs=109.8

Q ss_pred             hhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHH-HHHhCCCCCChHHHHHHHHH
Q psy4795          84 GAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWI-LVVWRPHPNNPKIFFTISGL  160 (285)
Q Consensus        84 ~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~-l~~~~p~~~~~~~~~~~~~l  160 (285)
                      +.|+++..|.  .+.++......++.+++.+++|+++||++|++..........+.... ........++.+...+..++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (447)
T d1pw4a_         273 PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIV  352 (447)
T ss_dssp             HHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHH
T ss_pred             hhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            5666666665  56888999999999999999999999999987655554443333322 23333334566777777888


Q ss_pred             HHHhhhhhhcccccceeeeccccc-hhHhHHHHHHHHH-HHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHHHHHHH
Q psy4795         161 WGVGDAVWQTQVNGLYGTLFRRNK-EAAFSNFRLWESV-GFVIAYAYSTHLCA----RMKLYVMGVVLVTGFCGYVIVEV  234 (285)
Q Consensus       161 ~Gig~g~~~~~~~ali~~~fp~~~-~~afs~~~l~~~l-G~~ig~~~s~~l~~----~~~l~il~~~lv~~~v~~~~~e~  234 (285)
                      .|++.+...+..+....+.+|++. +.+.++.+...++ |..++..+.+.+..    +.-.+++.+..+++.+....+..
T Consensus       353 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  432 (447)
T d1pw4a_         353 IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI  432 (447)
T ss_dssp             HHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899888888888999999999876 9999999988887 55667777666533    33345555555666555555544


Q ss_pred             HHHHhH
Q psy4795         235 RHMMKA  240 (285)
Q Consensus       235 ~~~~~~  240 (285)
                      +.+||+
T Consensus       433 ~~~~r~  438 (447)
T d1pw4a_         433 GEKRRH  438 (447)
T ss_dssp             HHHHHH
T ss_pred             hccccH
Confidence            433333

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=1.9e-12  Score=114.48  Aligned_cols=114  Identities=11%  Similarity=0.083  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhhhccccc
Q psy4795          95 SVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVWQTQVNG  174 (285)
Q Consensus        95 ~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~~~~~~a  174 (285)
                      ..+.......++..++..+.|++.||.||++++..+.++..++.+.+..    .++.+..++..++.|++.+..++..++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~~~~~  335 (417)
T d1pv7a_         260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF----ATSALEVVILKTLHMFEVPFLLVGCFK  335 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccc----ccccchhhHHHHHHHHHHHHHHHHHHH
Confidence            4567778888999999999999999999999999998887776655444    346677888888999999999999999


Q ss_pred             ceeeeccccc-hhHhHH-HHHHHHHHHHHHHHHhhhhhHH
Q psy4795         175 LYGTLFRRNK-EAAFSN-FRLWESVGFVIAYAYSTHLCAR  212 (285)
Q Consensus       175 li~~~fp~~~-~~afs~-~~l~~~lG~~ig~~~s~~l~~~  212 (285)
                      ++.+.+|++. +++.++ +++.+++|..++..+.+.+..+
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~  375 (417)
T d1pv7a_         336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES  375 (417)
T ss_dssp             HHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999876 888886 5678899999999888887654

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=3e-13  Score=122.92  Aligned_cols=120  Identities=10%  Similarity=0.110  Sum_probs=101.2

Q ss_pred             cch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhh
Q psy4795          91 LGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTISGLWGVGDAVW  168 (285)
Q Consensus        91 lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~~l~Gig~g~~  168 (285)
                      +|.  ++.|++..++.++..++++++|+++||+|||+++..+.++..++.+.........++++..++..++.|++.|..
T Consensus        54 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  133 (447)
T d1pw4a_          54 QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMG  133 (447)
T ss_dssp             STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHT
T ss_pred             hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhh
Confidence            566  689999999999999999999999999999999999998877776554332111245677888899999999999


Q ss_pred             hcccccceeeeccccc-hhHhHHHHHHHHHHHHHHHHHhhhhh
Q psy4795         169 QTQVNGLYGTLFRRNK-EAAFSNFRLWESVGFVIAYAYSTHLC  210 (285)
Q Consensus       169 ~~~~~ali~~~fp~~~-~~afs~~~l~~~lG~~ig~~~s~~l~  210 (285)
                      .+...+++.+.+|+++ +.+.+..+...++|..++..+++.+.
T Consensus       134 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  176 (447)
T d1pw4a_         134 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM  176 (447)
T ss_dssp             HHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHh
Confidence            9999999999998765 99999999999999999988776643

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=5.7e-11  Score=104.65  Aligned_cols=131  Identities=11%  Similarity=0.122  Sum_probs=86.3

Q ss_pred             hhhhhhhhhccch--hHHHHHHHHHHHHHHHHHhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q psy4795          81 GLWGAYISCALGV--SSVGYVMICFGVVNAICSLLFGTLMKFIGRSPLMALGFIVHCCLIWILVVWRPHPNNPKIFFTIS  158 (285)
Q Consensus        81 ~ft~~Y~~~~lg~--~~~G~v~~~~gv~~~i~s~l~G~LsDriGrk~~i~~g~~l~~i~~~~l~~~~p~~~~~~~~~~~~  158 (285)
                      .+.|.|+++.+|.  .++|++..++.++..+++++.|+++||+|||++++++.....++.................+...
T Consensus        28 ~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (417)
T d1pv7a_          28 PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGS  107 (417)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            4567788887776  68999999999999999999999999999999999888877776655444321111111122323


Q ss_pred             HHHHHhhhhhhcccccceeeeccc---cchhHhHHHHHHHHHHHHHHHHHhhhhhH
Q psy4795         159 GLWGVGDAVWQTQVNGLYGTLFRR---NKEAAFSNFRLWESVGFVIAYAYSTHLCA  211 (285)
Q Consensus       159 ~l~Gig~g~~~~~~~ali~~~fp~---~~~~afs~~~l~~~lG~~ig~~~s~~l~~  211 (285)
                      .+.+.+.+..............++   ++..+.+......+.|..++..+++.+..
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  163 (417)
T d1pv7a_         108 IVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT  163 (417)
T ss_dssp             HHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc
Confidence            333333333333333333333322   22456677888888888888888877654