Psyllid ID: psy4796

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
Protein Sequence
LSPLAGDEDSSGLLSGQDKASPGPPPADVTCLHCSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKNMHLY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccHHHcccccHHHHHHHcccccccccccccHHcccccHHHHHHHHccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccHHHHHccccccccccccHHHHHcccccHHHHHHHcccccccccccccccccccccHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHccccccccHHHHHHHHccccccccEEccHccccEcccccccEccccHHHEHEHcccccccEEccccccEEccHHHHHHHHHHHHccccEEccccccEEccHHHHHHHHHHHHccccEEccccccEEccHHHHHHHHHHcccccccccEcccccccccccccccEcccccHHHHcHHHEHEHHccccccccccHccccEccccHHHHHHHHccccccccccHccccEccccHHHHHHHHcccccccccccccccEccccHHHHHHHHHccc
Coil and Loop (DISEMBL)
lsplagdedssgllsgqdkaspgpppadvtclhcslttpcvmkdmirhgrlcefnsvvTSAKLQFLCLFCSYVATARIAIKNHLsshlgwkpykcphcdhcftQKVVLQRHLlthtgekpfachlcpyrasRKYYITAHLNSLLSALLLQHFlasqprrkcvhcsepissdMSEIIEHClvcpnatrtdkkkfvcfacpyatqyACYIKTHvmthtgdkpfacsycdytcnqssnlQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKNMHLY
Flexible Loop (DISEMBL)
lsplagdedssgllsgqdkaspgpPPADVTCLHCSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKNMHLY
Low Complexity Region (SEG)
LSPLAGDEDSSGLLSGQDKASPGPPPADVTCLHCSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITahlnsllsalllqhflasqPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKNMHLY
Disordered region (IsUnstruct)
****************************VTCLHCSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHL******
Disordered Region (DISOPRED)
******************KASPGPPPADVTCLHCSLTTPC***********CEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKL*LK*****
Disordered Region (DISEMBL)
**************************ADVTCLHCSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKNMHLY
Disordered Region (DISPRO)
LSPLAGDEDSSGLLSGQDKASPGPPPADVTCLHCSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKN****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LSPLAGDEDSSGLLSGQDKASPGPPPADVTCLHCSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKNMHLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	274	2.2.26 [Sep-21-2011]
Q6ZMW2	699	Zinc finger protein 782 O	yes	N/A	0.740	0.290	0.293	2e-21
P10076	861	Zinc finger protein 26 OS	no	N/A	0.675	0.214	0.320	3e-21
Q96IR2	970	Zinc finger protein 845 O	no	N/A	0.660	0.186	0.319	6e-21
P28698	734	Myeloid zinc finger 1 OS=	no	N/A	0.770	0.287	0.293	9e-21
Q9NQZ8	489	Endothelial zinc finger p	no	N/A	0.686	0.384	0.303	1e-20
Q86TJ5	538	Zinc finger protein 554 O	no	N/A	0.759	0.386	0.294	2e-20
Q99KE8	643	Zinc finger protein 64 OS	no	N/A	0.835	0.356	0.292	2e-20
Q3MIS6	628	Zinc finger protein 528 O	no	N/A	0.686	0.299	0.313	2e-20
P18745	435	Oocyte zinc finger protei	N/A	N/A	0.700	0.441	0.298	3e-20
Q9NTW7	645	Zinc finger protein 64 ho	no	N/A	0.846	0.359	0.284	3e-20

>sp|Q6ZMW2|ZN782_HUMAN Zinc finger protein 782 OS=Homo sapiens GN=ZNF782 PE=2 SV=1

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 99/225 (44%), Gaps = 22/225 (9%)

Query: 49  GRLCEFNSVVT------SAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCF 102
           G+ C  NS +       + +  + C  C    + +  ++ H  +H G KPYKC  CD  F
Sbjct: 372 GKSCSMNSHLIWPQKSHTGEKPYECPECGKAFSEKSRLRKHQRTHTGEKPYKCDGCDKAF 431

Query: 103 TQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCV 162
           + K  L+ H  THTGEKPF CH C    + K  +  H  +       +          C 
Sbjct: 432 SAKSGLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFE----------CN 481

Query: 163 HCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFA 222
            C +   S MS +  H       T T ++ + C  C  A +    ++ H  THTG+KP+ 
Sbjct: 482 ECGKSF-SHMSGLRNH-----RRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYK 535

Query: 223 CSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLH 267
           C+ C     Q S L+ H RIH  E+ Y C  C    +   +L++H
Sbjct: 536 CNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVH 580

May be involved in transcriptional regulation.
Homo sapiens (taxid: 9606)

>sp|P10076|ZFP26_MOUSE Zinc finger protein 26 OS=Mus musculus GN=Zfp26 PE=2 SV=2

 Score =  102 bits (255), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 98/209 (46%), Gaps = 24/209 (11%)

Query: 65  FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
           + C  C    + R  +  HL  H G +PY C  C+  FT    L  H+ THTGEKPF C 
Sbjct: 386 YECKVCGKAFSGRSWLTIHLRKHTGERPYPCTECEKAFTSFAQLTEHIKTHTGEKPFRCK 445

Query: 125 LCP--YRASR------------KYYITAHLNSLLSAL--LLQHFLASQPRR--KCVHCSE 166
           +C   +R S             K Y   +     +A   L +H L     +  +C  C +
Sbjct: 446 VCARTFRNSSCLKTHFRIHTGIKPYKCNYCGKAFTARSGLTKHVLIHNGEKPYECKECGK 505

Query: 167 PISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYC 226
             S+  S ++EH  +      T +K F C+ C  A  ++  +  H+ THTG+KPF C+ C
Sbjct: 506 AFSTS-SGLVEHIRI-----HTGEKPFECYQCGKALAHSSSLVGHLRTHTGEKPFECNQC 559

Query: 227 DYTCNQSSNLQTHLRIHKTEREYACGKCA 255
           D T  +SS L+ H+R H  E+ Y C +C 
Sbjct: 560 DKTFTRSSYLRIHMRTHTGEKPYECKECG 588

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

>sp|Q96IR2|ZN845_HUMAN Zinc finger protein 845 OS=Homo sapiens GN=ZNF845 PE=2 SV=3

 Score =  101 bits (251), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 89/197 (45%), Gaps = 16/197 (8%)

Query: 58  VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTG 117
           + + +  + C  C      R  +  H  +H G KPYKC  CD  F+ K  LQRH   HTG
Sbjct: 600 IHNEERSYKCNRCGKFFRHRSYLAVHWRTHSGEKPYKCEECDEAFSFKSNLQRHRRIHTG 659

Query: 118 EKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIE 177
           EKP+ C+ C    SRK Y+T H          +     +   KC  C +    + + II 
Sbjct: 660 EKPYRCNECGKTFSRKSYLTCH----------RRLHTGEKPYKCNECGKTFGRNSALIIH 709

Query: 178 HCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQ 237
                  A  T +K + C  C  A      +  H+  HTG+KP+ C  CD   ++ S+L+
Sbjct: 710 ------KAIHTGEKPYKCNECGKAFSQKSSLTCHLRLHTGEKPYKCEECDKVFSRKSSLE 763

Query: 238 THLRIHKTEREYACGKC 254
            H RIH  E+ Y C  C
Sbjct: 764 KHRRIHTGEKPYKCKVC 780

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|P28698|MZF1_HUMAN Myeloid zinc finger 1 OS=Homo sapiens GN=MZF1 PE=1 SV=3

 Score =  100 bits (250), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 90/228 (39%), Gaps = 17/228 (7%)

Query: 43  KDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCF 102
           +   R   L E  +V T  K  F C+ C      R  +  H   H G +P+ C  C   F
Sbjct: 492 ESFARRAVLLEHQAVHTGDK-SFGCVECGERFGRRSVLLQHRRVHSGERPFACAECGQSF 550

Query: 103 TQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCV 162
            Q+  L +H   HTGE+PFAC  C     ++  +T HL                    C 
Sbjct: 551 RQRSNLTQHRRIHTGERPFACAECGKAFRQRPTLTQHLRVHTGEKPF----------ACP 600

Query: 163 HCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFA 222
            C +  S  +       L     T T +K + C  C         +  H   HTG++PFA
Sbjct: 601 ECGQRFSQRLK------LTRHQRTHTGEKPYHCGECGLGFTQVSRLTEHQRIHTGERPFA 654

Query: 223 CSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKN 270
           C  C  +  Q +NL  H RIH  ER YAC +C       P L  HL+ 
Sbjct: 655 CPECGQSFRQHANLTQHRRIHTGERPYACPECGKAFRQRPTLTQHLRT 702

Binds to target promoter DNA and functions as trancription regulator. Regulates transcription from the PADI1 and CDH2 promoter. May be one regulator of transcriptional events during hemopoietic development.

Homo sapiens (taxid: 9606)

>sp|Q9NQZ8|ZNF71_HUMAN Endothelial zinc finger protein induced by tumor necrosis factor alpha OS=Homo sapiens GN=ZNF71 PE=2 SV=1

 Score =  100 bits (249), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 93/211 (44%), Gaps = 23/211 (10%)

Query: 45  MIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQ 104
           +I+H R       + + +  F C  C      R ++  H   H G KPY C  C   F+Q
Sbjct: 145 LIKHQR-------IHTGEKPFECDTCGKHFIERSSLTIHQRVHTGEKPYACGDCGKAFSQ 197

Query: 105 KVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHC 164
           ++ L  H  THTGEKP+ C +C     +   +T H          +     +    C  C
Sbjct: 198 RMNLTVHQRTHTGEKPYVCDVCGKAFRKTSSLTQH----------ERIHTGEKPYACGDC 247

Query: 165 SEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
            +  S +M       L+    T T +K +VC  C  A     ++  H  THTG+KP+AC 
Sbjct: 248 GKAFSQNMH------LIVHQRTHTGEKPYVCPECGRAFSQNMHLTEHQRTHTGEKPYACK 301

Query: 225 YCDYTCNQSSNLQTHLRIHKTEREYACGKCA 255
            C    N+SS+L  H R H  E+ Y CG+C 
Sbjct: 302 ECGKAFNKSSSLTLHQRNHTGEKPYVCGECG 332

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q86TJ5|ZN554_HUMAN Zinc finger protein 554 OS=Homo sapiens GN=ZNF554 PE=2 SV=1

 Score =  100 bits (248), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 91/224 (40%), Gaps = 16/224 (7%)

Query: 46  IRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQK 105
           + HG     ++ + +A+  F C  C  V   R ++  H   H G KPY+C  C   FT  
Sbjct: 305 LNHGMALTIHNKINTAEKPFECHQCGKVFNRRHSLSEHQRIHTGEKPYECQECGRAFTHS 364

Query: 106 VVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCS 165
             L RHL THTGEKP+ C  C    +R   +T H          Q     +   KC  C 
Sbjct: 365 STLTRHLRTHTGEKPYGCGECGKAFNRISSLTQH----------QRIHTGEKPYKCEDCG 414

Query: 166 EPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSY 225
           +             L+    T T +K + C  C  A      +  H  THTG+ P+ C  
Sbjct: 415 KSFCQSS------YLILHKRTHTGEKPYECSECGKAFSDRSSLNQHERTHTGENPYECKQ 468

Query: 226 CDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
           C    +Q S+L  H R H  E+ Y C +C    +    L  H K
Sbjct: 469 CGRAFSQRSSLVRHERTHTGEKPYRCQECGKAFSQSSSLVTHQK 512

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q99KE8|ZFP64_MOUSE Zinc finger protein 64 OS=Mus musculus GN=Zfp64 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 108/263 (41%), Gaps = 34/263 (12%)

Query: 22  PGPPPAD--VTCLH--CSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATAR 77
           P  PPA   + C +  C   T   MKDM RH +       + +      C  C    + +
Sbjct: 133 PTAPPAQKRLGCCYPGCQFKTAYGMKDMERHLK-------IHTGDKPHKCEVCGKCFSRK 185

Query: 78  IAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYIT 137
             +K H+  H G KPYKC  CD+       L +HL  H+ E+PF C +CPY +     +T
Sbjct: 186 DKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLT 245

Query: 138 AHLNSLLSALLLQHFL--ASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVC 195
            HL S  +++L       A  P  +         SD  +     L      RT       
Sbjct: 246 VHLRSHTASVLENDVQKPAGLPAEE---------SDAQQAPAVTLSLEAKERTATLGERT 296

Query: 196 FACPYATQYACYIKT---------HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTE 246
           F C Y     C+ KT         H+  HTGDKP  C +CD   ++  NL  H+R H + 
Sbjct: 297 FNCRYP---GCHFKTVHGMKDLDRHLRIHTGDKPHKCEFCDKCFSRKDNLTMHMRCHTSV 353

Query: 247 REYACGKCAYRTAALPDLKLHLK 269
           + + C  C Y       LK HL+
Sbjct: 354 KPHKCHLCDYAAVDSSSLKKHLR 376

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

>sp|Q3MIS6|ZN528_HUMAN Zinc finger protein 528 OS=Homo sapiens GN=ZNF528 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 87/204 (42%), Gaps = 16/204 (7%)

Query: 65  FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
           + C  C  V  +   +  H   H G KPYKC  CD  F Q   L RH   HTGEKP++C+
Sbjct: 269 YKCHECDKVFRSSSKLAQHQRIHTGEKPYKCHECDKVFNQIAHLVRHQKIHTGEKPYSCN 328

Query: 125 LCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPN 184
            C    SR  Y+  H          Q     +   KC  C +  S   S +I H L+   
Sbjct: 329 KCGKVFSRHSYLAEH----------QTVHTGEKPYKCEECGKAFSV-RSSLITHQLI--- 374

Query: 185 ATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHK 244
              T +K + C  C       C++ +H   HT ++P+ CS C    +Q S+L  H + H 
Sbjct: 375 --HTGRKPYKCKECDKVFGRKCFLTSHQRIHTRERPYGCSQCGKIFSQKSDLIRHRKTHT 432

Query: 245 TEREYACGKCAYRTAALPDLKLHL 268
            E+ Y C KC        DL  H 
Sbjct: 433 DEKPYKCNKCGTAFREFSDLTAHF 456

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|P18745|ZO22_XENLA Oocyte zinc finger protein XlCOF22 OS=Xenopus laevis PE=3 SV=1

 Score = 99.0 bits (245), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 87/208 (41%), Gaps = 16/208 (7%)

Query: 65  FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
           F C  C    + R    +H  +H G KP+ C  C  CF  +  L  H  THTGEKPF+C 
Sbjct: 154 FCCFQCGKSFSVRSRFLDHRRTHTGEKPFSCLECGKCFLFRSRLLEHQRTHTGEKPFSCL 213

Query: 125 LCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPN 184
            C    S +  +  H  +                  C+ C +  S         CL+   
Sbjct: 214 KCGKCFSVRSRLKDHQRTHTGEKPFS----------CLECGKSFS------FRPCLIDHQ 257

Query: 185 ATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHK 244
            T T +K F CF C     +   +  H  THTG+KPF+CS C  + +  S L+ H R H 
Sbjct: 258 RTHTGEKPFSCFQCGKCFSFQSRLINHQRTHTGEKPFSCSECGKSFSNQSCLRVHQRTHT 317

Query: 245 TEREYACGKCAYRTAALPDLKLHLKNMH 272
            E+ Y+C +C         L +H +  H
Sbjct: 318 GEKPYSCSECGKSFVTSSQLAVHRRRTH 345

May be involved in transcriptional regulation.

Xenopus laevis (taxid: 8355)

>sp|Q9NTW7|ZF64B_HUMAN Zinc finger protein 64 homolog, isoforms 3 and 4 OS=Homo sapiens GN=ZFP64 PE=2 SV=3

 Score = 99.0 bits (245), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 113/260 (43%), Gaps = 28/260 (10%)

Query: 22  PGPPPAD--VTCLH--CSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATAR 77
           P  PPA   + C +  C   T   MKDM RH +       + +      C  C    + +
Sbjct: 135 PTTPPAQKRLNCCYPGCQFKTAYGMKDMERHLK-------IHTGDKPHKCEVCGKCFSRK 187

Query: 78  IAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYIT 137
             +K H+  H G KPYKC  CD+       L +HL  H+ E+PF C +CPY +     +T
Sbjct: 188 DKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLT 247

Query: 138 AHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTD-----KKK 192
            HL S  ++ L        P+  C+  +E   +  + +I      P+  R       ++ 
Sbjct: 248 VHLRSHTASELDDDV----PKANCL-STESTDTPKAPVI----TLPSEAREQMATLGERT 298

Query: 193 FVC--FACPYATQYACY-IKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREY 249
           F C    C + T +    +  H+  HTGDKP  C +CD   ++  NL  H+R H + + +
Sbjct: 299 FNCCYPGCHFKTVHGMKDLDRHLRIHTGDKPHKCEFCDKCFSRKDNLTMHMRCHTSVKPH 358

Query: 250 ACGKCAYRTAALPDLKLHLK 269
            C  C Y       LK HL+
Sbjct: 359 KCHLCDYAAVDSSSLKKHLR 378

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
260789295	527	hypothetical protein BRAFLDRAFT_61494 [B	0.711	0.370	0.369	9e-31
260836038	624	hypothetical protein BRAFLDRAFT_74799 [B	0.689	0.302	0.380	7e-30
260782551	980	hypothetical protein BRAFLDRAFT_108829 [	0.689	0.192	0.356	1e-29
260787851	351	hypothetical protein BRAFLDRAFT_89156 [B	0.689	0.538	0.351	2e-29
260823114	927	hypothetical protein BRAFLDRAFT_71682 [B	0.740	0.218	0.323	3e-29
260787841	748	hypothetical protein BRAFLDRAFT_89151 [B	0.689	0.252	0.360	3e-29
260813386	1077	hypothetical protein BRAFLDRAFT_103420 [	0.715	0.181	0.334	3e-29
260832610	230	hypothetical protein BRAFLDRAFT_207650 [	0.693	0.826	0.359	4e-29
260788983	670	hypothetical protein BRAFLDRAFT_107772 [	0.737	0.301	0.360	4e-29
260823022	703	hypothetical protein BRAFLDRAFT_71730 [B	0.708	0.275	0.338	5e-29

>gi|260789295|ref|XP_002589682.1| hypothetical protein BRAFLDRAFT_61494 [Branchiostoma floridae] gi|229274864|gb|EEN45693.1| hypothetical protein BRAFLDRAFT_61494 [Branchiostoma floridae]

 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 112/211 (53%), Gaps = 16/211 (7%)

Query: 59  TSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGE 118
           TS    ++C  C Y  T +  +  H+ +H G KPYKC  CD+   QK  L RHL THTG+
Sbjct: 269 TSGDKPYMCGECGYRTTRKSHLAEHMRTHTGDKPYKCDQCDYSAAQKSALNRHLATHTGD 328

Query: 119 KPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEH 178
           KP+ C  C YRA++K  ++ H+ +             +P  KC  C +  ++  S + +H
Sbjct: 329 KPYMCGECGYRAAQKSALSRHMRT---------HTGDKPY-KCDQC-DYSTARKSHLDQH 377

Query: 179 CLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQT 238
                 A  T +K ++C  C Y T     +  H+ THTGDKP+ C  CDY+  Q+S L  
Sbjct: 378 I-----AKHTGEKPYLCDQCGYRTAQKYSLFQHMRTHTGDKPYKCDQCDYSAAQTSALNR 432

Query: 239 HLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
           HL  H  E+ Y CG+C YRTA  P L +H++
Sbjct: 433 HLASHTGEKPYMCGECGYRTAYKPTLSIHMR 463

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260836038|ref|XP_002613014.1| hypothetical protein BRAFLDRAFT_74799 [Branchiostoma floridae] gi|229298396|gb|EEN69023.1| hypothetical protein BRAFLDRAFT_74799 [Branchiostoma floridae]

 Score =  137 bits (344), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 78/205 (38%), Positives = 103/205 (50%), Gaps = 16/205 (7%)

Query: 65  FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
           F+C  C Y +T R  +  H+  H G K +KC  CD   TQK  L +H+  HTGEKPF C 
Sbjct: 387 FMCGECGYRSTQRANLTRHMKMHTGEKSFKCDQCDFSATQKSNLVQHMTKHTGEKPFMCG 446

Query: 125 LCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPN 184
            C YRA++K  ++ H+               +   KC  C      D S I +  L    
Sbjct: 447 ECGYRAAQKSTLSTHMR----------IHTGEKPYKCDQC------DYSAIQKFSLDQHL 490

Query: 185 ATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHK 244
           A  T +K F+C  C Y T   C +  H+  HTGDKPF C  CDY+ +  SNL+ HL  H 
Sbjct: 491 AKHTGEKPFMCRECEYKTASKCDLAKHMRIHTGDKPFKCDQCDYSASVKSNLRHHLAKHT 550

Query: 245 TEREYACGKCAYRTAALPDLKLHLK 269
             + Y CG C YRTA   +L LH++
Sbjct: 551 GNKPYMCGDCGYRTARKYNLSLHMR 575

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260782551|ref|XP_002586349.1| hypothetical protein BRAFLDRAFT_108829 [Branchiostoma floridae] gi|229271453|gb|EEN42360.1| hypothetical protein BRAFLDRAFT_108829 [Branchiostoma floridae]

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 106/205 (51%), Gaps = 16/205 (7%)

Query: 65  FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
           ++C  C Y AT +  + NH+ +H G KPYKC  CD+   QK  L RHL  HTG+KP+ C 
Sbjct: 439 YMCGECGYRATQKGHLSNHMRTHTGEKPYKCDQCDYSAAQKSALDRHLAKHTGDKPYKCD 498

Query: 125 LCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPN 184
            C YR +RK +++ H+ +             +P  KC  C      D S + +  L    
Sbjct: 499 QCGYRTARKSHLSEHMRT---------HTGEKP-YKCDQC------DYSAVAKGNLDYHL 542

Query: 185 ATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHK 244
           A  T +K ++C  C Y T    ++  H+  HTG+ P+ C  CDY+    ++L  HL  H 
Sbjct: 543 AKHTGEKPYMCGECGYRTTRKSHLSKHMKIHTGENPYKCDQCDYSTAHKNSLDQHLAKHT 602

Query: 245 TEREYACGKCAYRTAALPDLKLHLK 269
            E+ Y CG+C YRTA   DL  H++
Sbjct: 603 GEKPYMCGECWYRTARKSDLVEHMR 627

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260787851|ref|XP_002588965.1| hypothetical protein BRAFLDRAFT_89156 [Branchiostoma floridae] gi|229274137|gb|EEN44976.1| hypothetical protein BRAFLDRAFT_89156 [Branchiostoma floridae]

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/205 (35%), Positives = 103/205 (50%), Gaps = 16/205 (7%)

Query: 65  FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
           ++C  C Y AT +  + NH+ +H G KPYKC  CD+   QK  L +HL  HTG+KP+ C 
Sbjct: 56  YMCGECGYRATQKCHLSNHMRTHTGEKPYKCDQCDYSAAQKSTLNQHLARHTGDKPYMCG 115

Query: 125 LCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPN 184
            C YR + K  +  H+ +             +P  KC  C +  S+    +  H      
Sbjct: 116 ECGYRTTHKSNLAQHMRT---------HTGEKPN-KCDQC-DYFSATKGNLDYHL----- 159

Query: 185 ATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHK 244
           A  T  K ++C  C Y     C++  H+ THTG KPF C  CDY+  + SNL  HL +H 
Sbjct: 160 AKHTGDKPYMCGECGYRATQKCHLSQHIRTHTGGKPFKCDQCDYSSKRKSNLNQHLAMHT 219

Query: 245 TEREYACGKCAYRTAALPDLKLHLK 269
            ++ Y CG+C YR A    L  H++
Sbjct: 220 GDKPYMCGECGYRAARKSHLSQHMR 244

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260823114|ref|XP_002604028.1| hypothetical protein BRAFLDRAFT_71682 [Branchiostoma floridae] gi|229289353|gb|EEN60039.1| hypothetical protein BRAFLDRAFT_71682 [Branchiostoma floridae]

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 113/226 (50%), Gaps = 23/226 (10%)

Query: 44  DMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFT 103
           DM RH        V  + +  ++C  C +  + +  +  H+ +H G KPYKC  CD+   
Sbjct: 629 DMGRH-------VVKHTGQKPYMCEECGFRTSRKFNLSAHMRTHTGEKPYKCDQCDYSAA 681

Query: 104 QKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVH 163
           QK  L +HL  HT EKP+ C  C +R +RK Y++ H+ +             +P  KC  
Sbjct: 682 QKSDLNKHLAKHTSEKPYICGECGHRTARKSYLSQHMRT---------HTGERPY-KCDQ 731

Query: 164 CSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFAC 223
           C +  ++D S ++ H         TD+K ++C  C Y      ++  H+  HTG+KP+ C
Sbjct: 732 C-DYCAADKSTLVRHIR-----KHTDEKPYMCGECGYRAAQKSHLSAHMRIHTGEKPYKC 785

Query: 224 SYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
             CDY+  Q S+L  HL IH  ++ Y CG+C YR A    L  H++
Sbjct: 786 DQCDYSAGQKSDLDRHLTIHTGDKPYMCGECGYRAARKSHLSQHMR 831

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260787841|ref|XP_002588960.1| hypothetical protein BRAFLDRAFT_89151 [Branchiostoma floridae] gi|229274132|gb|EEN44971.1| hypothetical protein BRAFLDRAFT_89151 [Branchiostoma floridae]

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 102/205 (49%), Gaps = 16/205 (7%)

Query: 65  FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
           ++C  C Y    +  +  H+ +H G KPYKC HCD+   QK  L  HL  HTG+KP+ C 
Sbjct: 553 YMCGECEYRTVLKSDLSRHMRTHTGDKPYKCDHCDYSAAQKSHLDSHLANHTGDKPYMCG 612

Query: 125 LCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPN 184
            C YR + K YI+ H+ +             +P  KC  C      D S   +  L    
Sbjct: 613 ECGYRTAIKSYISQHMRT---------HTGEKPY-KCDQC------DYSAARKDSLDQHL 656

Query: 185 ATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHK 244
           A  T  K ++C  C Y T     +  H+ THTGDKP+ C  CDY+  Q S+L +HL  H 
Sbjct: 657 AKHTGDKPYMCGECGYRTALKSDLSRHIRTHTGDKPYKCDQCDYSAAQKSHLDSHLAKHT 716

Query: 245 TEREYACGKCAYRTAALPDLKLHLK 269
            ++ Y CG+C YRTA    L  H++
Sbjct: 717 RDKPYMCGECGYRTAYKSALSRHMR 741

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260813386|ref|XP_002601399.1| hypothetical protein BRAFLDRAFT_103420 [Branchiostoma floridae] gi|229286694|gb|EEN57411.1| hypothetical protein BRAFLDRAFT_103420 [Branchiostoma floridae]

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 107/212 (50%), Gaps = 16/212 (7%)

Query: 58  VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTG 117
           + S +  ++C  C Y  + +  +  H+ +H G KPYKC  CD+   QK  L RHL  H+G
Sbjct: 759 IHSGEKPYMCGECGYRTSQKSYLSRHMRTHTGGKPYKCDQCDYSAAQKPHLDRHLRKHSG 818

Query: 118 EKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIE 177
           EKP+ C  C YRA+ K Y++ H+ +             +   KC  C +  ++  S +  
Sbjct: 819 EKPYMCGECGYRATLKSYLSKHMRTH----------TGEKSYKCDQC-DYFAARKSNLDR 867

Query: 178 HCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQ 237
           H         + +K ++C  C Y      Y+  H+ THTG+K + C  CDY   + SNL 
Sbjct: 868 HLR-----KHSGEKPYMCGECGYRATLKSYLSKHMRTHTGEKSYKCDQCDYFAARKSNLD 922

Query: 238 THLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
            HLR H  E+ Y CG+C YR A + DL  H++
Sbjct: 923 RHLRTHTGEKPYMCGECGYRAAQMSDLSKHMR 954

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260832610|ref|XP_002611250.1| hypothetical protein BRAFLDRAFT_207650 [Branchiostoma floridae] gi|229296621|gb|EEN67260.1| hypothetical protein BRAFLDRAFT_207650 [Branchiostoma floridae]

 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 106/206 (51%), Gaps = 16/206 (7%)

Query: 64  QFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +F+C  C Y ATAR  I  H+ +H   KPY+C  CD+   +K  L RH+  HTGEKP+ C
Sbjct: 9   RFMCGVCGYRATARSNITIHMRTHTDVKPYQCDQCDYSTARKGNLDRHMANHTGEKPYMC 68

Query: 124 HLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCP 183
             C YRA+ KY +T H+ +   A             KC  C      D S   +  L   
Sbjct: 69  GECGYRAAEKYSLTVHMRTHTGAKPY----------KCDLC------DFSAATKSGLNKH 112

Query: 184 NATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
            AT T  K ++C  C   T     +  H+ +HTG+KP+ C  C+Y+  + S+L +H+  H
Sbjct: 113 MATHTGNKPYMCGECGLRTADRYSLTVHMRSHTGEKPYICDQCNYSAAKKSDLDSHMARH 172

Query: 244 KTEREYACGKCAYRTAALPDLKLHLK 269
             E+ Y CG+C YRTA   +L  H++
Sbjct: 173 TGEKPYMCGECGYRTAHRSNLTAHMR 198

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260788983|ref|XP_002589528.1| hypothetical protein BRAFLDRAFT_107772 [Branchiostoma floridae] gi|229274706|gb|EEN45539.1| hypothetical protein BRAFLDRAFT_107772 [Branchiostoma floridae]

 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 106/219 (48%), Gaps = 17/219 (7%)

Query: 51  LCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQR 110
           L +  +  T  KL F+C  C Y    R  +  H+ +H G KPYKC  CD+   QK  L  
Sbjct: 432 LNDHRTKHTGEKL-FMCGQCGYRTVVRSHLSRHMRTHTGEKPYKCDECDYSAAQKSTLDS 490

Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISS 170
           HL  HTG+KPF C  C YRA +K  ++ H+ +             +P  KC HC      
Sbjct: 491 HLRKHTGDKPFMCGECGYRAVQKSALSIHMRT---------HTGEKPY-KCDHC------ 534

Query: 171 DMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTC 230
           D S   +  L    A  T  + F+C  C Y T     +  H+ THTG++P+ C  CDY+ 
Sbjct: 535 DYSASEKATLNSHVAKHTGDEPFMCGECGYRTAVKSRLSKHMRTHTGERPYKCDQCDYSA 594

Query: 231 NQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
              SNL  HL  H  E+ Y CG+C YRT     L LH++
Sbjct: 595 AHKSNLDNHLLKHTGEKPYMCGECGYRTTRKSHLSLHMR 633

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260823022|ref|XP_002603982.1| hypothetical protein BRAFLDRAFT_71730 [Branchiostoma floridae] gi|229289307|gb|EEN59993.1| hypothetical protein BRAFLDRAFT_71730 [Branchiostoma floridae]

 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 102/210 (48%), Gaps = 16/210 (7%)

Query: 60  SAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
           S +  ++C  C Y    +  +  HL +H G KPYKC  CD+   QK  L +H++ HTGEK
Sbjct: 450 SGEKPYMCGKCGYRTAQKQHLSQHLRTHTGEKPYKCDKCDYSAAQKSTLDQHVIKHTGEK 509

Query: 120 PFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHC 179
           P+ C  C YR ++K ++T H+               +   KC  C      D S   +  
Sbjct: 510 PYMCGSCGYRTAKKSHLTEHVR----------IHTGEKPYKCDRC------DYSAATKTA 553

Query: 180 LVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTH 239
           L    A  T +K ++C  C Y T    ++  H+  HTG+KP+ C  CDY   Q   L  H
Sbjct: 554 LKQHVAIHTGEKPYLCGECGYRTAQKSHLSKHMRKHTGEKPYKCDQCDYAAAQKGTLDQH 613

Query: 240 LRIHKTEREYACGKCAYRTAALPDLKLHLK 269
           L  H  ++ Y CG+C YRTA   +L  HL+
Sbjct: 614 LMKHSGDKPYMCGECGYRTAQRTNLSQHLR 643

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
MGI|MGI:2141255	541	Zfp513 "zinc finger protein 51	0.5	0.253	0.333	3.7e-32
RGD|1310456	541	Zfp513 "zinc finger protein 51	0.496	0.251	0.328	1.7e-31
UNIPROTKB|Q5FWU5	541	Znf513 "Zinc finger protein 51	0.496	0.251	0.328	1.7e-31
UNIPROTKB|Q8N8E2	541	ZNF513 "Zinc finger protein 51	0.496	0.251	0.328	1.7e-31
UNIPROTKB|E1B7S0	542	ZNF513 "Uncharacterized protei	0.496	0.250	0.328	1.7e-31
UNIPROTKB|E2RFE2	543	ZNF513 "Uncharacterized protei	0.496	0.250	0.328	1.7e-31
ZFIN|ZDB-GENE-071004-66	346	zgc:173816 "zgc:173816" [Danio	0.682	0.540	0.338	5.7e-27
ZFIN|ZDB-GENE-120214-31	488	si:ch73-367f21.6 "si:ch73-367f	0.733	0.411	0.294	6.3e-26
ZFIN|ZDB-GENE-070424-49	459	zgc:162972 "zgc:162972" [Danio	0.733	0.437	0.290	3.5e-25
ZFIN|ZDB-GENE-070705-205	473	si:ch73-138e16.6 "si:ch73-138e	0.835	0.484	0.268	2.7e-23

MGI|MGI:2141255 Zfp513 "zinc finger protein 513" [Mus musculus (taxid:10090)]

 Score = 218 (81.8 bits), Expect = 3.7e-32, Sum P(2) = 3.7e-32
 Identities = 51/153 (33%), Positives = 69/153 (45%)

Query:   117 GEKPFACHLCPYRASRKYYITXXXXXXXXXXXXXXXXXXXPRRKCVHCSEPISSDMSEII 176
             G+K FAC LCP+      ++                    P R C  C    S+ +  + 
Sbjct:   356 GDKGFACSLCPFATHYPNHLARHMKTHSGEK---------PFR-CARCPYA-SAHLDNLK 404

Query:   177 EHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNL 236
              H  V      T +K + C  CPYA      +K H   H+GDKPF CS C+Y+CNQS NL
Sbjct:   405 RHQRV-----HTGEKPYKCPLCPYACGNLANLKRHGRIHSGDKPFRCSLCNYSCNQSMNL 459

Query:   237 QTHLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
             + H+  H  E+ + C  CAY T    + K H K
Sbjct:   460 KRHMLRHTGEKPFRCATCAYTTGHWDNYKRHQK 492

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=ISO

RGD|1310456 Zfp513 "zinc finger protein 513" [Rattus norvegicus (taxid:10116)]

 Score = 212 (79.7 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
 Identities = 50/152 (32%), Positives = 68/152 (44%)

Query:   118 EKPFACHLCPYRASRKYYITXXXXXXXXXXXXXXXXXXXPRRKCVHCSEPISSDMSEIIE 177
             +K FAC LCP+      ++                    P R C  C    S+ +  +  
Sbjct:   357 DKGFACSLCPFATHYPNHLARHMKTHSGEK---------PFR-CARCPYA-SAHLDNLKR 405

Query:   178 HCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQ 237
             H  V      T +K + C  CPYA      +K H   H+GDKPF CS C+Y+CNQS NL+
Sbjct:   406 HQRV-----HTGEKPYKCPLCPYACGNLANLKRHGRIHSGDKPFRCSLCNYSCNQSMNLK 460

Query:   238 THLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
              H+  H  E+ + C  CAY T    + K H K
Sbjct:   461 RHMLRHTGEKPFRCATCAYTTGHWDNYKRHQK 492

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA;ISO

GO:0060041 "retina development in camera-type eye" evidence=ISO;ISS

UNIPROTKB|Q5FWU5 Znf513 "Zinc finger protein 513" [Rattus norvegicus (taxid:10116)]

 Score = 212 (79.7 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
 Identities = 50/152 (32%), Positives = 68/152 (44%)

Query:   118 EKPFACHLCPYRASRKYYITXXXXXXXXXXXXXXXXXXXPRRKCVHCSEPISSDMSEIIE 177
             +K FAC LCP+      ++                    P R C  C    S+ +  +  
Sbjct:   357 DKGFACSLCPFATHYPNHLARHMKTHSGEK---------PFR-CARCPYA-SAHLDNLKR 405

Query:   178 HCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQ 237
             H  V      T +K + C  CPYA      +K H   H+GDKPF CS C+Y+CNQS NL+
Sbjct:   406 HQRV-----HTGEKPYKCPLCPYACGNLANLKRHGRIHSGDKPFRCSLCNYSCNQSMNLK 460

Query:   238 THLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
              H+  H  E+ + C  CAY T    + K H K
Sbjct:   461 RHMLRHTGEKPFRCATCAYTTGHWDNYKRHQK 492

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q8N8E2 ZNF513 "Zinc finger protein 513" [Homo sapiens (taxid:9606)]

 Score = 212 (79.7 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
 Identities = 50/152 (32%), Positives = 68/152 (44%)

Query:   118 EKPFACHLCPYRASRKYYITXXXXXXXXXXXXXXXXXXXPRRKCVHCSEPISSDMSEIIE 177
             +K FAC LCP+      ++                    P R C  C    S+ +  +  
Sbjct:   357 DKGFACSLCPFATHYPNHLARHMKTHSGEK---------PFR-CARCPYA-SAHLDNLKR 405

Query:   178 HCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQ 237
             H  V      T +K + C  CPYA      +K H   H+GDKPF CS C+Y+CNQS NL+
Sbjct:   406 HQRV-----HTGEKPYKCPLCPYACGNLANLKRHGRIHSGDKPFRCSLCNYSCNQSMNLK 460

Query:   238 THLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
              H+  H  E+ + C  CAY T    + K H K
Sbjct:   461 RHMLRHTGEKPFRCATCAYTTGHWDNYKRHQK 492

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0003677 "DNA binding" evidence=IDA

GO:0060041 "retina development in camera-type eye" evidence=IMP

UNIPROTKB|E1B7S0 ZNF513 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 212 (79.7 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
 Identities = 50/152 (32%), Positives = 68/152 (44%)

Query:   118 EKPFACHLCPYRASRKYYITXXXXXXXXXXXXXXXXXXXPRRKCVHCSEPISSDMSEIIE 177
             +K FAC LCP+      ++                    P R C  C    S+ +  +  
Sbjct:   358 DKGFACSLCPFATHYPNHLARHMKTHSGEK---------PFR-CARCPYA-SAHLDNLKR 406

Query:   178 HCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQ 237
             H  V      T +K + C  CPYA      +K H   H+GDKPF CS C+Y+CNQS NL+
Sbjct:   407 HQRV-----HTGEKPYKCPLCPYACGNLANLKRHGRIHSGDKPFRCSLCNYSCNQSMNLK 461

Query:   238 THLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
              H+  H  E+ + C  CAY T    + K H K
Sbjct:   462 RHMLRHTGEKPFRCATCAYTTGHWDNYKRHQK 493

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2RFE2 ZNF513 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 212 (79.7 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
 Identities = 50/152 (32%), Positives = 68/152 (44%)

Query:   118 EKPFACHLCPYRASRKYYITXXXXXXXXXXXXXXXXXXXPRRKCVHCSEPISSDMSEIIE 177
             +K FAC LCP+      ++                    P R C  C    S+ +  +  
Sbjct:   359 DKGFACSLCPFATHYPNHLARHMKTHSGEK---------PFR-CARCPYA-SAHLDNLKR 407

Query:   178 HCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQ 237
             H  V      T +K + C  CPYA      +K H   H+GDKPF CS C+Y+CNQS NL+
Sbjct:   408 HQRV-----HTGEKPYKCPLCPYACGNLANLKRHGRIHSGDKPFRCSLCNYSCNQSMNLK 462

Query:   238 THLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
              H+  H  E+ + C  CAY T    + K H K
Sbjct:   463 RHMLRHTGEKPFRCATCAYTTGHWDNYKRHQK 494

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-071004-66 zgc:173816 "zgc:173816" [Danio rerio (taxid:7955)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 70/207 (33%), Positives = 97/207 (46%)

Query:    65 FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
             + C  C+   +    +K H  +H G KPYKC HCD  F+Q   L+RH   HTGEKP+ C 
Sbjct:   149 YKCSHCNKRFSHTGHLKTHERNHTGEKPYKCSHCDKRFSQSENLKRHERIHTGEKPYKCS 208

Query:   125 LCPYRASRKYYITXXXXXXXXXXXXXXXXXXXPRRKCVHCSE--PISSDMSEIIEHCLVC 182
              C  R S+   +                    P  KC HC +   +S DM     H    
Sbjct:   209 HCDKRFSQPENLKRHERIHTGEK---------PY-KCSHCDKRFSVSGDMKR---H---- 251

Query:   183 PNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRI 242
                  T +K ++C  C     +  ++KTH   HTG+KP+ CS+CD   +Q +NL+TH RI
Sbjct:   252 -ERIHTGEKPYMCSHCDKRFSHTGHLKTHERIHTGEKPYTCSHCDKRFSQPANLKTHERI 310

Query:   243 HKTEREYACGKCAYRTAALPDLKLHLK 269
             H  E+ Y C +C         LK H+K
Sbjct:   311 HTGEKPYTCDQCLKSFVQFITLKKHMK 337

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-120214-31 si:ch73-367f21.6 "si:ch73-367f21.6" [Danio rerio (taxid:7955)]

 Score = 297 (109.6 bits), Expect = 6.3e-26, P = 6.3e-26
 Identities = 64/217 (29%), Positives = 99/217 (45%)

Query:    53 EFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHL 112
             E ++V+ +    F C+ C    T R  +KNH+  H G  P+ CP CD CFT K  L+ HL
Sbjct:    51 ESHTVIHTGDQNFNCVVCGKSFTQRRYLKNHMKIHTGDHPFTCPECDKCFTVKQSLETHL 110

Query:   113 LTHTGEKPFACHLCPYRASRKYYITXXXXXXXXXXXXXXXXXXXPRRKCVHCSEPISSDM 172
               HTGEKPF C  C     +K+ I                        C  C +  +   
Sbjct:   111 KIHTGEKPFICPDC----GKKFRIKHSLEGHMRIHTGEKPYT------CQECGKRFTEKQ 160

Query:   173 SEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQ 232
             + + +H  +      T +K + C  C  + +    ++ H+  HTG+KP+ C  C  +  +
Sbjct:   161 T-LDKHLTI-----HTGEKPYSCPECGKSFRVKFCLENHIKIHTGEKPYTCQECGKSFTE 214

Query:   233 SSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
               NL+ H+RIH  E+ +AC +C        DLK H++
Sbjct:   215 KQNLERHMRIHTGEKPFACPECGRSFRVKQDLKSHVR 251

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-070424-49 zgc:162972 "zgc:162972" [Danio rerio (taxid:7955)]

 Score = 289 (106.8 bits), Expect = 3.5e-25, P = 3.5e-25
 Identities = 63/217 (29%), Positives = 98/217 (45%)

Query:    53 EFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHL 112
             E + V+ + +  + C  C    T    +KNH+  H G  P+ CP CD CFT K  L+ HL
Sbjct:    47 ESHKVIHTGEQHYFCSECGKSFTQMRYLKNHMKIHAGDHPFTCPECDKCFTMKHSLESHL 106

Query:   113 LTHTGEKPFACHLCPYRASRKYYITXXXXXXXXXXXXXXXXXXXPRRKCVHCSEPISSDM 172
               HTGEKPF C  C     +K+ +                        C +C +      
Sbjct:   107 KIHTGEKPFTCPDC----GKKFRLKQSLEGHMRIHTGEKPYT------CQNCGKSFRE-- 154

Query:   173 SEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQ 232
              +I++  L       T +K + C  C  + +    ++ H+ THTG+KP+ C  C  +   
Sbjct:   155 KQILDTHLTI----HTGEKPYSCPECGKSFRVKKCLENHIKTHTGEKPYTCQECGKSFAI 210

Query:   233 SSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
               NL+ H+RIH  E+ Y+C +C        DLK+H++
Sbjct:   211 KQNLERHMRIHTGEKPYSCPECGRSFRVKQDLKIHVR 247

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-070705-205 si:ch73-138e16.6 "si:ch73-138e16.6" [Danio rerio (taxid:7955)]

 Score = 273 (101.2 bits), Expect = 2.7e-23, P = 2.7e-23
 Identities = 66/246 (26%), Positives = 103/246 (41%)

Query:    34 CSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPY 93
             CS+   C       H ++ + + V+ +   +F+C  C         +K HL  H G KPY
Sbjct:   129 CSVCGKC-----FTHLQILKRHEVIHTGVKEFMCFACDKAFLTAGHLKRHLMIHTGEKPY 183

Query:    94 KCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITXXXXXXXXXX------ 147
             KC HC+  FT+   ++ H   HTGEKP+ C  C    SR   +                 
Sbjct:   184 KCSHCEMRFTRTESMKAHERIHTGEKPYKCSHCDMGFSRSESLKMHERIHTGEKPFKCSF 243

Query:   148 --XXXXXXXXXPRRKCVHCSE-PISSDMSEI---IEHCLVCPNATRTDKKKFVCFACPYA 201
                           + +H  E P      +    +   L       T +K + C  C   
Sbjct:   244 CIMTFSRSESLKTHERIHTGEKPYGCSYCDSRFNLAKDLKIHERIHTGEKPYQCSYCEKR 303

Query:   202 TQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAAL 261
                   +KTH M+HTG+KPF C++C+    +S +L+ H+RIH  ++ Y+C  C    +  
Sbjct:   304 FSQLQNLKTHEMSHTGEKPFKCAFCEKQFTRSESLKAHMRIHIGDKPYSCSYCESTFSLS 363

Query:   262 PDLKLH 267
              DLK+H
Sbjct:   364 RDLKIH 369

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	274
KOG2462|consensus	279		99.96
KOG2462|consensus	279		99.95
KOG1074|consensus	958		99.94
KOG3608|consensus	467		99.93
KOG3623|consensus	1007		99.92
KOG3608|consensus	467		99.91
KOG1074|consensus	958		99.86
KOG3623|consensus	1007		99.82
KOG3576|consensus	267		99.77
KOG3576|consensus	267		99.75
PHA00733	128	hypothetical protein	99.39
PLN03086	567	PRLI-interacting factor K; Provisional	99.36
PLN03086	567	PRLI-interacting factor K; Provisional	99.33
PHA02768	55	hypothetical protein; Provisional	99.12
KOG3993|consensus	500		99.11
KOG3993|consensus	500		99.08
PHA00733	128	hypothetical protein	99.08
PHA02768	55	hypothetical protein; Provisional	98.94
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.87
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.69
PHA00616	44	hypothetical protein	98.64
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.55
PHA00616	44	hypothetical protein	98.51
PHA00732	79	hypothetical protein	98.5
PHA00732	79	hypothetical protein	98.42
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.17
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.13
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.12
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.06
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.91
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.82
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.77
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.72
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.7
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.67
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.59
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.57
smart00355	26	ZnF_C2H2 zinc finger.	97.2
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.19
smart00355	26	ZnF_C2H2 zinc finger.	97.15
PRK04860	160	hypothetical protein; Provisional	97.05
KOG2231|consensus	669		97.04
KOG1146|consensus	1406		97.03
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.03
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.94
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.92
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.6
KOG2785|consensus	390		96.55
PRK04860	160	hypothetical protein; Provisional	96.49
KOG2785|consensus	390		96.46
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.3
COG5236	493	Uncharacterized conserved protein, contains RING Z	96.26
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.93
KOG2482|consensus	423		95.9
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	95.89
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	95.56
KOG1146|consensus	1406		95.56
KOG2231|consensus	669		95.43
KOG2482|consensus	423		95.36
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	95.15
KOG2893|consensus	341		95.11
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	94.93
COG5236	493	Uncharacterized conserved protein, contains RING Z	94.76
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	94.4
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	93.72
COG4049	65	Uncharacterized protein containing archaeal-type C	93.61
COG5048	467	FOG: Zn-finger [General function prediction only]	93.0
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	92.82
KOG2893|consensus	341		92.8
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	92.22
COG5048	467	FOG: Zn-finger [General function prediction only]	92.06
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	91.51
KOG4173|consensus	253		91.08
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	90.97
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	90.97
PHA00626	59	hypothetical protein	90.94
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	90.75
COG4049	65	Uncharacterized protein containing archaeal-type C	90.66
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	90.33
PRK06266	178	transcription initiation factor E subunit alpha; V	89.74
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	89.52
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	89.43
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	89.03
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	88.86
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	88.84
smart00531	147	TFIIE Transcription initiation factor IIE.	88.68
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	88.45
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	88.14
KOG2186|consensus	276		87.73
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	87.55
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	87.45
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	87.43
COG1592	166	Rubrerythrin [Energy production and conversion]	87.38
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	87.11
KOG2186|consensus	276		86.92
KOG4173|consensus	253		86.62
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	85.39
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	85.07
PF02176	60	zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A	85.03
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	84.87
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	83.73
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	83.22
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	82.29
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	81.97
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	80.91
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	80.7
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	80.58

>KOG2462|consensus

Probab=99.96  E-value=3.1e-30  Score=193.59  Aligned_cols=133  Identities=29%  Similarity=0.573  Sum_probs=117.0

Q ss_pred             CcccCCCCCcccCChhHHHHHHhhhcC---CCCccCCCCCCccccHHHHHHHHHHHHHHHHHHhHhhcCCCccCCCCCCC
Q psy4796          91 KPYKCPHCDHCFTQKVVLQRHLLTHTG---EKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEP  167 (274)
Q Consensus        91 ~~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~c~~c~~~  167 (274)
                      ..|+|..|++.|.+..+|.+|.++|..   .+.+.|+.|++.|.+-..|+.|+++                         
T Consensus       129 ~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirT-------------------------  183 (279)
T KOG2462|consen  129 PRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRT-------------------------  183 (279)
T ss_pred             CceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhc-------------------------
Confidence            458899999999999999999888744   4567888888888877777777665                         


Q ss_pred             CCCChhhhhhhccCCCCCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCC
Q psy4796         168 ISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTER  247 (274)
Q Consensus       168 ~~~~~~~l~~h~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  247 (274)
                                         |+  -+.+|.+||+.|...+.|+.|+++|+|||||.|+.|++.|.++++|+.||++|.+.|
T Consensus       184 -------------------H~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K  242 (279)
T KOG2462|consen  184 -------------------HT--LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVK  242 (279)
T ss_pred             -------------------cC--CCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCc
Confidence                               22  347899999999999999999999999999999999999999999999999999999


Q ss_pred             ceecCCCCccCCChhHHHHHHh
Q psy4796         248 EYACGKCAYRTAALPDLKLHLK  269 (274)
Q Consensus       248 ~~~C~~C~~~f~~~~~l~~H~~  269 (274)
                      +|+|+.|+|+|..++.|.+|..
T Consensus       243 ~~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  243 KHQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             cccCcchhhHHHHHHHHHHhhh
Confidence            9999999999999999999975

>KOG2462|consensus

Probab=99.95  E-value=3.6e-28  Score=182.56  Aligned_cols=136  Identities=25%  Similarity=0.480  Sum_probs=123.8

Q ss_pred             CCcceecccccccccChHHHHHHHhhcCC---CCcccCCCCCcccCChhHHHHHHhhhcCCCCccCCCCCCccccHHHHH
Q psy4796          61 AKLQFLCLFCSYVATARIAIKNHLSSHLG---WKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYIT  137 (274)
Q Consensus        61 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~  137 (274)
                      ....|+|+.||+.+.+..+|.+|...|-.   .+.+.|+.|+++|.+...|+.|+++|.  -+++|.+||+.|...+.|.
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQ  204 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQ  204 (279)
T ss_pred             cCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhh
Confidence            34468999999999999999999998853   467999999999999999999999997  6799999999999999988


Q ss_pred             HHHHHHHHHHHHHhHhhcCCCccCCCCCCCCCCChhhhhhhccCCCCCcccCCCccccCCCCccccCHHHHHHHHhhccC
Q psy4796         138 AHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTG  217 (274)
Q Consensus       138 ~H~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  217 (274)
                      -|+                                            ++|++++||.|+.|++.|.++++|+.|+++|.+
T Consensus       205 GHi--------------------------------------------RTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~  240 (279)
T KOG2462|consen  205 GHI--------------------------------------------RTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSD  240 (279)
T ss_pred             ccc--------------------------------------------ccccCCCCccCCcccchhcchHHHHHHHHhhcC
Confidence            884                                            457899999999999999999999999999999


Q ss_pred             CCCcccCcCccccCCchhHHHHHhh
Q psy4796         218 DKPFACSYCDYTCNQSSNLQTHLRI  242 (274)
Q Consensus       218 ~~~~~C~~C~~~f~~~~~l~~H~~~  242 (274)
                      .|+|+|..|+++|...+.|.+|...
T Consensus       241 ~K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  241 VKKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             CccccCcchhhHHHHHHHHHHhhhh
Confidence            9999999999999999999999765

>KOG1074|consensus

Probab=99.94  E-value=3.3e-28  Score=206.25  Aligned_cols=169  Identities=21%  Similarity=0.401  Sum_probs=139.3

Q ss_pred             ccCCCCCcccCChhHHHHHHhhhcCCCCccCCCCCCccccHHHHHHHHHHHHHHHHHHhHhhcCCCccCC---CCCCCCC
Q psy4796          93 YKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCV---HCSEPIS  169 (274)
Q Consensus        93 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~c~---~c~~~~~  169 (274)
                      -.|-+|.++......|+-|.++|++++||+|.+|++.|.++.+|+.|+-.|...    +  ....+++|+   +|-+.|.
T Consensus       606 NqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~----p--~~R~q~ScP~~~ic~~kft  679 (958)
T KOG1074|consen  606 NQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAK----P--PARVQFSCPSTFICQKKFT  679 (958)
T ss_pred             cceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccC----c--cccccccCCchhhhccccc
Confidence            689999999999999999999999999999999999999999999999773210    1  222568898   8999998


Q ss_pred             CChhhhhhhccCCCCCcccC-------------CCccccCCCCccccCHHHHHHHHhhccCC------------------
Q psy4796         170 SDMSEIIEHCLVCPNATRTD-------------KKKFVCFACPYATQYACYIKTHVMTHTGD------------------  218 (274)
Q Consensus       170 ~~~~~l~~h~~~~~~~~~~~-------------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~------------------  218 (274)
                      . .-.|-.|     ...|.+             ...-.|..|.+.|.....+..++..|.+.                  
T Consensus       680 n-~V~lpQh-----IriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~~~  753 (958)
T KOG1074|consen  680 N-AVTLPQH-----IRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPESEPDEQMDERTETEELD  753 (958)
T ss_pred             c-cccccce-----EEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcccCCcccccccccccccc
Confidence            8 6666666     444331             11246888888888887777777776210                  


Q ss_pred             --------------------------------------------------------------------------------
Q psy4796         219 --------------------------------------------------------------------------------  218 (274)
Q Consensus       219 --------------------------------------------------------------------------------  218 (274)
                                                                                                      
T Consensus       754 ~tp~~~e~~~~~~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~~  833 (958)
T KOG1074|consen  754 VTPPPPENSCGRELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQE  833 (958)
T ss_pred             cCCCccccccccccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhccc
Confidence                                                                                            


Q ss_pred             --------------------------------------------CCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         219 --------------------------------------------KPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       219 --------------------------------------------~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                                                                  ....|.+||+.|...++|..|+++|+++|||.|.+|
T Consensus       834 ~~~l~eg~~t~~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC  913 (958)
T KOG1074|consen  834 TSMLNEGLATKTNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFC  913 (958)
T ss_pred             ccccccccccccccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhhcCCCCCCccchhh
Confidence                                                        116799999999999999999999999999999999


Q ss_pred             CccCCChhHHHHHHhhhcC
Q psy4796         255 AYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       255 ~~~f~~~~~l~~H~~~~H~  273 (274)
                      ++.|..+.+|+.|+..|+.
T Consensus       914 ~~aFttrgnLKvHMgtH~w  932 (958)
T KOG1074|consen  914 EEAFTTRGNLKVHMGTHMW  932 (958)
T ss_pred             hhhhhhhhhhhhhhccccc
Confidence            9999999999999998874

>KOG3608|consensus

Probab=99.93  E-value=3.8e-26  Score=176.31  Aligned_cols=229  Identities=22%  Similarity=0.395  Sum_probs=193.9

Q ss_pred             CCCeeecc--ccCCcchhhHHHHHhhhcc----ccccccccC-Cc-ceeccc--ccccccChHHHHHHHhhcCCCCcccC
Q psy4796          26 PADVTCLH--CSLTTPCVMKDMIRHGRLC----EFNSVVTSA-KL-QFLCLF--CSYVATARIAIKNHLSSHLGWKPYKC   95 (274)
Q Consensus        26 ~~~~~C~~--C~~~f~~~~~~l~~H~~~~----~~~~~~h~~-~~-~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C   95 (274)
                      +..|.|..  |+..| .++..|..|+..+    +-+.....+ ++ .+.|.+  |-+.+.++..|++|++.|++++...|
T Consensus       132 g~~f~C~WedCe~~F-~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvAC  210 (467)
T KOG3608|consen  132 GQNFRCGWEDCEREF-VSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVAC  210 (467)
T ss_pred             hhhhccChhhcCCcc-cCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEec
Confidence            34478865  99999 9999999998622    111111111 21 255666  88999999999999999999999999


Q ss_pred             CCCCcccCChhHHHHHHhh--hcCCCCccCCCCCCccccHHHHHHHHHHHHHHHHHHhHhhcCCCccCCCCCCCCCCChh
Q psy4796          96 PHCDHCFTQKVVLQRHLLT--HTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMS  173 (274)
Q Consensus        96 ~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~  173 (274)
                      +.|+.-|.++..|..|.+.  -....+|.|..|.+.|.++..|..|+..|            ..-|+|+.|+.+.+. .+
T Consensus       211 p~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rH------------vn~ykCplCdmtc~~-~s  277 (467)
T KOG3608|consen  211 PHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRH------------VNCYKCPLCDMTCSS-AS  277 (467)
T ss_pred             chHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHh------------hhcccccccccCCCC-hH
Confidence            9999999999999999864  34456899999999999999999998862            356999999999999 99


Q ss_pred             hhhhhccCCCCCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCc--CccccCCchhHHHHHhhhC-CC--Cc
Q psy4796         174 EIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHK-TE--RE  248 (274)
Q Consensus       174 ~l~~h~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~-~~--~~  248 (274)
                      +|..|+    +..|...++|+|..|.+.|...+.|.+|...|. +..|+|..  |...|.+..++++|++.++ +.  .+
T Consensus       278 sL~~H~----r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~  352 (467)
T KOG3608|consen  278 SLTTHI----RYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPIL  352 (467)
T ss_pred             HHHHHH----HhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Confidence            999995    456778999999999999999999999999998 77799988  9999999999999998754 44  45


Q ss_pred             eecCCCCccCCChhHHHHHHhhhcC
Q psy4796         249 YACGKCAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       249 ~~C~~C~~~f~~~~~l~~H~~~~H~  273 (274)
                      |.|-.|.+.|.+-.+|.+|+.+.|+
T Consensus       353 Y~CH~Cdr~ft~G~~L~~HL~kkH~  377 (467)
T KOG3608|consen  353 YACHCCDRFFTSGKSLSAHLMKKHG  377 (467)
T ss_pred             eeeecchhhhccchhHHHHHHHhhc
Confidence            9999999999999999999998886

>KOG3623|consensus

Probab=99.92  E-value=3.8e-26  Score=191.06  Aligned_cols=81  Identities=25%  Similarity=0.577  Sum_probs=77.5

Q ss_pred             CCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCChhHHHHHH
Q psy4796         189 DKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHL  268 (274)
Q Consensus       189 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  268 (274)
                      ....|.|+.|++.|...+.|.+|.-.|+|.+||+|.+|.+.|.-+..|..|+|.|.|+|||+|..|+|.|....+...||
T Consensus       891 e~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQHM  970 (1007)
T KOG3623|consen  891 EDGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQHM  970 (1007)
T ss_pred             ccccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhhh
Confidence            45579999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             h
Q psy4796         269 K  269 (274)
Q Consensus       269 ~  269 (274)
                      .
T Consensus       971 N  971 (1007)
T KOG3623|consen  971 N  971 (1007)
T ss_pred             c
Confidence            3

>KOG3608|consensus

Probab=99.91  E-value=1.5e-24  Score=167.61  Aligned_cols=191  Identities=25%  Similarity=0.515  Sum_probs=170.0

Q ss_pred             eeccc--ccccccChHHHHHHHhhcCC------------CC-cccCCC--CCcccCChhHHHHHHhhhcCCCCccCCCCC
Q psy4796          65 FLCLF--CSYVATARIAIKNHLSSHLG------------WK-PYKCPH--CDHCFTQKVVLQRHLLTHTGEKPFACHLCP  127 (274)
Q Consensus        65 ~~C~~--C~~~f~~~~~l~~H~~~h~~------------~~-~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~  127 (274)
                      |.|.+  |+..|.+...+..|+..|.-            ++ -+.|.+  |-+.|.++..|+.|++.|.+++...|+.|+
T Consensus       135 f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg  214 (467)
T KOG3608|consen  135 FRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCG  214 (467)
T ss_pred             hccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHH
Confidence            55655  99999999999999887742            12 256776  999999999999999999999999999999


Q ss_pred             CccccHHHHHHHHHHHHHHHHHHhHhhcCCCccCCCCCCCCCCChhhhhhhccCCCCCcccCCCccccCCCCccccCHHH
Q psy4796         128 YRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACY  207 (274)
Q Consensus       128 ~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~C~~C~~~f~~~~~  207 (274)
                      .-|.++..|-+|++.        .......+|.|..|.+.|.. ...|..|     ...|.  +-|+|+.|..+....+.
T Consensus       215 ~~F~~~tkl~DH~rR--------qt~l~~n~fqC~~C~KrFaT-eklL~~H-----v~rHv--n~ykCplCdmtc~~~ss  278 (467)
T KOG3608|consen  215 ELFRTKTKLFDHLRR--------QTELNTNSFQCAQCFKRFAT-EKLLKSH-----VVRHV--NCYKCPLCDMTCSSASS  278 (467)
T ss_pred             HHhccccHHHHHHHh--------hhhhcCCchHHHHHHHHHhH-HHHHHHH-----HHHhh--hcccccccccCCCChHH
Confidence            999999999999987        44466779999999999999 8888888     44444  45999999999999999


Q ss_pred             HHHHHh-hccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCC--CCccCCChhHHHHHHhhhc
Q psy4796         208 IKTHVM-THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK--CAYRTAALPDLKLHLKNMH  272 (274)
Q Consensus       208 l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H  272 (274)
                      |..|++ .|...|||.|..|++.|...++|.+|+.+|. +-.|.|..  |..+|..+..|.+|++.+|
T Consensus       279 L~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evh  345 (467)
T KOG3608|consen  279 LTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVH  345 (467)
T ss_pred             HHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhc
Confidence            999998 7889999999999999999999999999999 66799977  9999999999999999998

>KOG1074|consensus

Probab=99.86  E-value=2e-22  Score=171.57  Aligned_cols=219  Identities=22%  Similarity=0.362  Sum_probs=157.7

Q ss_pred             CCCCCCCCeeeccccCCcchhhHHHHHhhhccccccccccCCcceecccccccccChHHHHHHHhhcCCC----CcccCC
Q psy4796          21 SPGPPPADVTCLHCSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGW----KPYKCP   96 (274)
Q Consensus        21 ~~~~~~~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~----~~~~C~   96 (274)
                      .......+-+|.+|.++. .-+..|+.|++       .|+++++|+|.+||+.|.++.+|+.||..|...    .+|.|+
T Consensus       598 ~~~~~TdPNqCiiC~rVl-SC~saLqmHyr-------tHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP  669 (958)
T KOG1074|consen  598 SENKRTDPNQCIICLRVL-SCPSALQMHYR-------THTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCP  669 (958)
T ss_pred             cccccCCccceeeeeecc-cchhhhhhhhh-------cccCcCccccccccchhccccchhhcccccccCccccccccCC
Confidence            344555678999999999 99999999999       999999999999999999999999999988543    458999


Q ss_pred             ---CCCcccCChhHHHHHHhhhcCC-CC------------ccCCCCCCccccHHHHHHHHHHHHHHHHHHh---------
Q psy4796          97 ---HCDHCFTQKVVLQRHLLTHTGE-KP------------FACHLCPYRASRKYYITAHLNSLLSALLLQH---------  151 (274)
Q Consensus        97 ---~C~~~f~~~~~l~~H~~~h~~~-~~------------~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~---------  151 (274)
                         +|.+.|.....|..|++.|.+. .+            =.|..|.+.|.....+..++..+........         
T Consensus       670 ~~~ic~~kftn~V~lpQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t  749 (958)
T KOG1074|consen  670 STFICQKKFTNAVTLPQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPESEPDEQMDERTET  749 (958)
T ss_pred             chhhhcccccccccccceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcccCCcccccccccc
Confidence               9999999999999999999843 21            3588899988777777777655411000000         


Q ss_pred             -HhhcCCCccCCCCCCCCCCChhhhhhh----------------------------------------------------
Q psy4796         152 -FLASQPRRKCVHCSEPISSDMSEIIEH----------------------------------------------------  178 (274)
Q Consensus       152 -~~~~~~~~~c~~c~~~~~~~~~~l~~h----------------------------------------------------  178 (274)
                       ......+..+..|+..+.. ...+..+                                                    
T Consensus       750 ~~~~~tp~~~e~~~~~~~~~-e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pv  828 (958)
T KOG1074|consen  750 EELDVTPPPPENSCGRELEG-EMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPV  828 (958)
T ss_pred             cccccCCCccccccccccCc-ccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCch
Confidence             0000011122222222211 0000000                                                    


Q ss_pred             -------ccC-----------------------------C-CCCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCc
Q psy4796         179 -------CLV-----------------------------C-PNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPF  221 (274)
Q Consensus       179 -------~~~-----------------------------~-~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  221 (274)
                             ++.                             + ....-...+...|..||+.|...+.|.+|+++|+++|||
T Consensus       829 l~~~~~~~l~eg~~t~~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~rTHtg~KPF  908 (958)
T KOG1074|consen  829 LWNQETSMLNEGLATKTNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMRTHTGPKPF  908 (958)
T ss_pred             hhcccccccccccccccccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhhcCCCCCCc
Confidence                   000                             0 000001123478999999999999999999999999999


Q ss_pred             ccCcCccccCCchhHHHHHhhhCCCCc
Q psy4796         222 ACSYCDYTCNQSSNLQTHLRIHKTERE  248 (274)
Q Consensus       222 ~C~~C~~~f~~~~~l~~H~~~h~~~~~  248 (274)
                      .|.+|++.|+.+.+|+.||..|....+
T Consensus       909 ~C~fC~~aFttrgnLKvHMgtH~w~q~  935 (958)
T KOG1074|consen  909 FCHFCEEAFTTRGNLKVHMGTHMWVQP  935 (958)
T ss_pred             cchhhhhhhhhhhhhhhhhccccccCC
Confidence            999999999999999999999987654

>KOG3623|consensus

Probab=99.82  E-value=3e-21  Score=162.01  Aligned_cols=80  Identities=21%  Similarity=0.494  Sum_probs=76.5

Q ss_pred             CCccCCCCCCCCCCChhhhhhhccCCCCCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhH
Q psy4796         157 PRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNL  236 (274)
Q Consensus       157 ~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l  236 (274)
                      ..|.|+.|++.|.. .+.|.+|     .-.|++.+||.|.+|.++|..+..|..|.+.|.|+|||+|..|+++|+-...+
T Consensus       893 gmyaCDqCDK~FqK-qSSLaRH-----KYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSY  966 (1007)
T KOG3623|consen  893 GMYACDQCDKAFQK-QSSLARH-----KYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSY  966 (1007)
T ss_pred             ccchHHHHHHHHHh-hHHHHHh-----hhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccch
Confidence            45899999999999 9999999     99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhh
Q psy4796         237 QTHLRI  242 (274)
Q Consensus       237 ~~H~~~  242 (274)
                      .+||..
T Consensus       967 SQHMNH  972 (1007)
T KOG3623|consen  967 SQHMNH  972 (1007)
T ss_pred             Hhhhcc
Confidence            999853

>KOG3576|consensus

Probab=99.77  E-value=2.9e-19  Score=128.18  Aligned_cols=113  Identities=29%  Similarity=0.542  Sum_probs=103.1

Q ss_pred             CCCCeeeccccCCcchhhHHHHHhhhccccccccccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCCCcccCC
Q psy4796          25 PPADVTCLHCSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQ  104 (274)
Q Consensus        25 ~~~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~  104 (274)
                      +...|.|.+|++.| ....-|.+|++       -|+.-+.+.|..||+.|.+..+|.+|+++|++.+||+|..|++.|+.
T Consensus       114 d~d~ftCrvCgK~F-~lQRmlnrh~k-------ch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftq  185 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKF-GLQRMLNRHLK-------CHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQ  185 (267)
T ss_pred             CCCeeeeehhhhhh-hHHHHHHHHhh-------hccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHh
Confidence            34569999999999 99999999999       99999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhhhcC-----------CCCccCCCCCCccccHHHHHHHHHHHHH
Q psy4796         105 KVVLQRHLLTHTG-----------EKPFACHLCPYRASRKYYITAHLNSLLS  145 (274)
Q Consensus       105 ~~~l~~H~~~h~~-----------~~~~~C~~C~~~f~~~~~l~~H~~~~~~  145 (274)
                      .-.|..|.+.-++           .+.|.|+.||..-.....+..|++.++.
T Consensus       186 rcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp  237 (267)
T KOG3576|consen  186 RCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHP  237 (267)
T ss_pred             hccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCC
Confidence            9999999875444           4669999999999999999999988654

>KOG3576|consensus

Probab=99.75  E-value=3.8e-19  Score=127.56  Aligned_cols=114  Identities=28%  Similarity=0.527  Sum_probs=103.4

Q ss_pred             hcCCCccCCCCCCCCCCChhhhhhhccCCCCCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCc
Q psy4796         154 ASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQS  233 (274)
Q Consensus       154 ~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  233 (274)
                      .+.-.+.|.+|++.|.- ..+|.+|     .+-|..-+.|.|..||+.|.+...|.+|+++|+|.+||.|..|++.|+.+
T Consensus       113 sd~d~ftCrvCgK~F~l-QRmlnrh-----~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqr  186 (267)
T KOG3576|consen  113 SDQDSFTCRVCGKKFGL-QRMLNRH-----LKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQR  186 (267)
T ss_pred             CCCCeeeeehhhhhhhH-HHHHHHH-----hhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhh
Confidence            34556889999999988 8999999     89999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhh-hCC----------CCceecCCCCccCCChhHHHHHHhhhcC
Q psy4796         234 SNLQTHLRI-HKT----------EREYACGKCAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       234 ~~l~~H~~~-h~~----------~~~~~C~~C~~~f~~~~~l~~H~~~~H~  273 (274)
                      -.|..|++. |..          .+.|+|..||.+-.....+..|++.+|+
T Consensus       187 csleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp  237 (267)
T KOG3576|consen  187 CSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHP  237 (267)
T ss_pred             ccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCC
Confidence            999999865 542          3569999999999999999999999986

>PHA00733 hypothetical protein

Probab=99.39  E-value=3.1e-13  Score=93.90  Aligned_cols=100  Identities=16%  Similarity=0.269  Sum_probs=79.4

Q ss_pred             CCCCChhhhhhhccCCCCCcccCCCccccCCCCccccCHHHHHHH--Hh---hccCCCCcccCcCccccCCchhHHHHHh
Q psy4796         167 PISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTH--VM---THTGDKPFACSYCDYTCNQSSNLQTHLR  241 (274)
Q Consensus       167 ~~~~~~~~l~~h~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H--~~---~h~~~~~~~C~~C~~~f~~~~~l~~H~~  241 (274)
                      .|.-..+.|.++     .......+++.|.+|+..|.....|..+  +.   .+.+.+||.|+.|++.|.+...|..|++
T Consensus        20 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r   94 (128)
T PHA00733         20 FIHVTLEELKRY-----HSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIR   94 (128)
T ss_pred             EEecCHHHhhhh-----hcCChhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHh
Confidence            333335555554     3344456789999999998887777666  22   3345889999999999999999999999


Q ss_pred             hhCCCCceecCCCCccCCChhHHHHHHhhhcC
Q psy4796         242 IHKTEREYACGKCAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       242 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  273 (274)
                      .|  ..+|.|+.|++.|.....|.+|+...|+
T Consensus        95 ~h--~~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         95 YT--EHSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             cC--CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            87  3579999999999999999999999986

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.36  E-value=3.9e-12  Score=108.07  Aligned_cols=146  Identities=16%  Similarity=0.348  Sum_probs=108.1

Q ss_pred             ccCCCCCcccCChhHHHHHHhhhcCCCCccCCC--CCCccccHHHHHHHHHHHHHHHHHHhHhhcCCCccCCCCCCCCCC
Q psy4796          93 YKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHL--CPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISS  170 (274)
Q Consensus        93 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~  170 (274)
                      -.|+.|...... ..|..|.... ......|+.  |+..|... .+                   ...+.|+.|++.|. 
T Consensus       408 V~C~NC~~~i~l-~~l~lHe~~C-~r~~V~Cp~~~Cg~v~~r~-el-------------------~~H~~C~~Cgk~f~-  464 (567)
T PLN03086        408 VECRNCKHYIPS-RSIALHEAYC-SRHNVVCPHDGCGIVLRVE-EA-------------------KNHVHCEKCGQAFQ-  464 (567)
T ss_pred             EECCCCCCccch-hHHHHHHhhC-CCcceeCCcccccceeecc-cc-------------------ccCccCCCCCCccc-
Confidence            468888877554 3455776543 334567874  88777322 22                   22357888888884 


Q ss_pred             ChhhhhhhccCCCCCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCC----------chhHHHHH
Q psy4796         171 DMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQ----------SSNLQTHL  240 (274)
Q Consensus       171 ~~~~l~~h~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~----------~~~l~~H~  240 (274)
                       ...|..|     ...+.  .++.|+ ||+.+ .+..|..|+.+|.+++++.|..|++.|..          ...|..|.
T Consensus       465 -~s~LekH-----~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE  534 (567)
T PLN03086        465 -QGEMEKH-----MKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHE  534 (567)
T ss_pred             -hHHHHHH-----HHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHH
Confidence             4567777     44442  679999 99755 67899999999999999999999999852          34799998


Q ss_pred             hhhCCCCceecCCCCccCCChhHHHHHHhhhcC
Q psy4796         241 RIHKTEREYACGKCAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       241 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  273 (274)
                      ... +.+++.|..||+.+. ..+|..|+-.+|.
T Consensus       535 ~~C-G~rt~~C~~Cgk~Vr-lrdm~~H~~~~h~  565 (567)
T PLN03086        535 SIC-GSRTAPCDSCGRSVM-LKEMDIHQIAVHQ  565 (567)
T ss_pred             Hhc-CCcceEccccCCeee-ehhHHHHHHHhhc
Confidence            885 899999999999875 5569999998886

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.33  E-value=1.2e-11  Score=105.11  Aligned_cols=148  Identities=18%  Similarity=0.411  Sum_probs=104.2

Q ss_pred             CCCCCeeeccccCCcchhhHHHHHhhhccccccccccCCcceeccc--ccccccChHHHHHHHhhcCCCCcccCCCCCcc
Q psy4796          24 PPPADVTCLHCSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCLF--CSYVATARIAIKNHLSSHLGWKPYKCPHCDHC  101 (274)
Q Consensus        24 ~~~~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~  101 (274)
                      .......|..|.+..  ....|..|...|..        ..-.|+.  |+..|... .+.         ..+.|+.|++.
T Consensus       403 ~~~~~V~C~NC~~~i--~l~~l~lHe~~C~r--------~~V~Cp~~~Cg~v~~r~-el~---------~H~~C~~Cgk~  462 (567)
T PLN03086        403 MDVDTVECRNCKHYI--PSRSIALHEAYCSR--------HNVVCPHDGCGIVLRVE-EAK---------NHVHCEKCGQA  462 (567)
T ss_pred             CCCCeEECCCCCCcc--chhHHHHHHhhCCC--------cceeCCcccccceeecc-ccc---------cCccCCCCCCc
Confidence            344567899999998  77778899874442        2345774  88877422 222         23578888888


Q ss_pred             cCChhHHHHHHhhhcCCCCccCCCCCCccccHHHHHHHHHHHHHHHHHHhHhhcCCCccCCCCCCCCCCC---------h
Q psy4796         102 FTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSD---------M  172 (274)
Q Consensus       102 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~---------~  172 (274)
                      |. ...|..|+..++  .++.|+ |+..+ .+..|..|+..        +  ...+++.|+.|+..+...         .
T Consensus       463 f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~t--------h--Cp~Kpi~C~fC~~~v~~g~~~~d~~d~~  527 (567)
T PLN03086        463 FQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQAS--------T--CPLRLITCRFCGDMVQAGGSAMDVRDRL  527 (567)
T ss_pred             cc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhc--------c--CCCCceeCCCCCCccccCccccchhhhh
Confidence            85 577888888764  678888 88654 56788888765        3  677888888888877421         3


Q ss_pred             hhhhhhccCCCCCcccCCCccccCCCCccccCHHHHHHHHh
Q psy4796         173 SEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVM  213 (274)
Q Consensus       173 ~~l~~h~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~  213 (274)
                      +.|..|     .... +.+++.|..||+.+..+ .+..|+.
T Consensus       528 s~Lt~H-----E~~C-G~rt~~C~~Cgk~Vrlr-dm~~H~~  561 (567)
T PLN03086        528 RGMSEH-----ESIC-GSRTAPCDSCGRSVMLK-EMDIHQI  561 (567)
T ss_pred             hhHHHH-----HHhc-CCcceEccccCCeeeeh-hHHHHHH
Confidence            467777     5554 77889999999888855 4667765

>PHA02768 hypothetical protein; Provisional

Probab=99.12  E-value=2.7e-11  Score=69.15  Aligned_cols=42  Identities=19%  Similarity=0.420  Sum_probs=28.6

Q ss_pred             cccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCChhHH
Q psy4796         221 FACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDL  264 (274)
Q Consensus       221 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l  264 (274)
                      |.|+.||+.|...++|..|+++|.  ++|+|..|++.|...+.|
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            567777777777777777777766  566777777776665544

>KOG3993|consensus

Probab=99.11  E-value=8.3e-12  Score=99.79  Aligned_cols=111  Identities=16%  Similarity=0.248  Sum_probs=72.1

Q ss_pred             CCeeeccccCCcchhhHHHHHhhhccccccccccCCcceecccccccccChHHHHHHHhhcCCCCcccC---CCCCcccC
Q psy4796          27 ADVTCLHCSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKC---PHCDHCFT  103 (274)
Q Consensus        27 ~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C---~~C~~~f~  103 (274)
                      ..|.|.+|...| .+...|.+|.-       .---...|+|++|+|+|..-.+|..|.++|.....--=   +-=.+...
T Consensus       266 GdyiCqLCK~kY-eD~F~LAQHrC-------~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~  337 (500)
T KOG3993|consen  266 GDYICQLCKEKY-EDAFALAQHRC-------PRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVE  337 (500)
T ss_pred             HHHHHHHHHHhh-hhHHHHhhccC-------CeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhh
Confidence            358899999999 99999999975       33334568999999999999999999999854321100   00000011


Q ss_pred             ChhHHHHHHh--hhcCCCCccCCCCCCccccHHHHHHHHHHHHH
Q psy4796         104 QKVVLQRHLL--THTGEKPFACHLCPYRASRKYYITAHLNSLLS  145 (274)
Q Consensus       104 ~~~~l~~H~~--~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  145 (274)
                      +....+.-.+  ....+..|.|..|+++|.....|+.|+.+++.
T Consensus       338 ~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~  381 (500)
T KOG3993|consen  338 TRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQR  381 (500)
T ss_pred             hhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhc
Confidence            1111111110  01223469999999999999999999887654

>KOG3993|consensus

Probab=99.08  E-value=4e-11  Score=95.97  Aligned_cols=26  Identities=31%  Similarity=0.705  Sum_probs=17.9

Q ss_pred             cccCCCCCcccCChhHHHHHHhhhcC
Q psy4796          92 PYKCPHCDHCFTQKVVLQRHLLTHTG  117 (274)
Q Consensus        92 ~~~C~~C~~~f~~~~~l~~H~~~h~~  117 (274)
                      -|.|..|++.|.....|+.|+.+|..
T Consensus       356 i~~C~~C~KkFrRqAYLrKHqlthq~  381 (500)
T KOG3993|consen  356 IFSCHTCGKKFRRQAYLRKHQLTHQR  381 (500)
T ss_pred             eeecHHhhhhhHHHHHHHHhHHhhhc
Confidence            57777777777777777777666543

>PHA00733 hypothetical protein

Probab=99.08  E-value=2.3e-10  Score=79.65  Aligned_cols=83  Identities=18%  Similarity=0.303  Sum_probs=59.7

Q ss_pred             ccCCcceecccccccccChHHHHHH--Hh---hcCCCCcccCCCCCcccCChhHHHHHHhhhcCCCCccCCCCCCccccH
Q psy4796          59 TSAKLQFLCLFCSYVATARIAIKNH--LS---SHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRK  133 (274)
Q Consensus        59 h~~~~~~~C~~C~~~f~~~~~l~~H--~~---~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  133 (274)
                      -..++++.|.+|...|.....|..+  +.   .+.+.+||.|..|++.|.+...|..|++.+  ..+|.|+.|++.|...
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~  112 (128)
T PHA00733         35 TPEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNT  112 (128)
T ss_pred             ChhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCH
Confidence            3446677888888777766555544  11   223467888888888888888888888765  3468888888888888


Q ss_pred             HHHHHHHHHH
Q psy4796         134 YYITAHLNSL  143 (274)
Q Consensus       134 ~~l~~H~~~~  143 (274)
                      ..|..|+...
T Consensus       113 ~sL~~H~~~~  122 (128)
T PHA00733        113 DSTLDHVCKK  122 (128)
T ss_pred             HHHHHHHHHh
Confidence            8888887763

>PHA02768 hypothetical protein; Provisional

Probab=98.94  E-value=5.7e-10  Score=63.78  Aligned_cols=43  Identities=16%  Similarity=0.241  Sum_probs=39.4

Q ss_pred             ccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhH
Q psy4796         192 KFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNL  236 (274)
Q Consensus       192 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l  236 (274)
                      .|.|+.||+.|.....|..|+++|+  ++|.|..|++.|...+.|
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            3899999999999999999999999  689999999999977665

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.87  E-value=1.6e-09  Score=53.02  Aligned_cols=25  Identities=36%  Similarity=0.755  Sum_probs=18.2

Q ss_pred             hHHHHHhhhCCCCceecCCCCccCC
Q psy4796         235 NLQTHLRIHKTEREYACGKCAYRTA  259 (274)
Q Consensus       235 ~l~~H~~~h~~~~~~~C~~C~~~f~  259 (274)
                      +|.+|+++|++++||.|++|++.|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence            3667777777777777777777765

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.69  E-value=1.1e-08  Score=49.97  Aligned_cols=26  Identities=38%  Similarity=0.988  Sum_probs=23.6

Q ss_pred             HHHHHHhhccCCCCcccCcCccccCC
Q psy4796         207 YIKTHVMTHTGDKPFACSYCDYTCNQ  232 (274)
Q Consensus       207 ~l~~H~~~h~~~~~~~C~~C~~~f~~  232 (274)
                      +|..|+++|++++||.|+.|++.|..
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            47899999999999999999999863

...

>PHA00616 hypothetical protein

Probab=98.64  E-value=9.7e-09  Score=55.80  Aligned_cols=33  Identities=12%  Similarity=0.256  Sum_probs=21.9

Q ss_pred             CcccCcCccccCCchhHHHHHhhhCCCCceecC
Q psy4796         220 PFACSYCDYTCNQSSNLQTHLRIHKTEREYACG  252 (274)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (274)
                      ||+|+.||+.|..+++|.+|++.|++++++.|.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            466666666666666666666666666666554

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.55  E-value=1e-07  Score=55.83  Aligned_cols=51  Identities=31%  Similarity=0.621  Sum_probs=36.7

Q ss_pred             CcccCcCccccCCchhHHHHHhh-hCCC-CceecCCCCccCCChhHHHHHHhhhcC
Q psy4796         220 PFACSYCDYTCNQSSNLQTHLRI-HKTE-REYACGKCAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~-~~~~C~~C~~~f~~~~~l~~H~~~~H~  273 (274)
                      .|.|+.|++ ..+...|..|... |..+ +.+.||+|...+.  .+|.+|+...|+
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence            477888888 4456778888765 5443 4588888887655  488888888775

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00616 hypothetical protein

Probab=98.51  E-value=3.4e-08  Score=53.70  Aligned_cols=27  Identities=22%  Similarity=0.338  Sum_probs=25.9

Q ss_pred             ceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         248 EYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       248 ~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      ||+|+.||+.|.++++|.+|+++|||+
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~   27 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQ   27 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCC
Confidence            689999999999999999999999986

>PHA00732 hypothetical protein

Probab=98.50  E-value=7.8e-08  Score=60.61  Aligned_cols=48  Identities=25%  Similarity=0.454  Sum_probs=36.6

Q ss_pred             ccccCCCCccccCHHHHHHHHhh-ccCCCCcccCcCccccCCchhHHHHHhhhCC
Q psy4796         192 KFVCFACPYATQYACYIKTHVMT-HTGDKPFACSYCDYTCNQSSNLQTHLRIHKT  245 (274)
Q Consensus       192 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  245 (274)
                      +|.|..|++.|.....|..|++. |++   +.|+.|++.|.   .|..|++.+.+
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~---~l~~H~~~~~~   49 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL---TKCPVCNKSYR---RLNQHFYSQYD   49 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC---CccCCCCCEeC---ChhhhhcccCC
Confidence            47788888888888888888874 543   57888888887   47778866554

>PHA00732 hypothetical protein

Probab=98.42  E-value=2.8e-07  Score=58.13  Aligned_cols=45  Identities=27%  Similarity=0.490  Sum_probs=34.7

Q ss_pred             CcccCcCccccCCchhHHHHHhh-hCCCCceecCCCCccCCChhHHHHHHhh
Q psy4796         220 PFACSYCDYTCNQSSNLQTHLRI-HKTEREYACGKCAYRTAALPDLKLHLKN  270 (274)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~  270 (274)
                      ||.|..|++.|.+..+|+.|++. |.+   +.|+.|++.|.   .+..|++.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL---TKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC---CccCCCCCEeC---Chhhhhcc
Confidence            57888888888888888888874 543   57888888886   46677654

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.17  E-value=4.6e-06  Score=48.80  Aligned_cols=50  Identities=24%  Similarity=0.450  Sum_probs=39.4

Q ss_pred             ccccCCCCccccCHHHHHHHHh-hccCC-CCcccCcCccccCCchhHHHHHhhhC
Q psy4796         192 KFVCFACPYATQYACYIKTHVM-THTGD-KPFACSYCDYTCNQSSNLQTHLRIHK  244 (274)
Q Consensus       192 ~~~C~~C~~~f~~~~~l~~H~~-~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~h~  244 (274)
                      .|.||.|++ ..+...|..|.. .|..+ +.+.|++|...+.  .+|.+|+..++
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            489999999 455788999987 55543 5699999998755  48999998754

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.13  E-value=1.5e-06  Score=41.13  Aligned_cols=22  Identities=27%  Similarity=0.640  Sum_probs=14.6

Q ss_pred             eecCCCCccCCChhHHHHHHhh
Q psy4796         249 YACGKCAYRTAALPDLKLHLKN  270 (274)
Q Consensus       249 ~~C~~C~~~f~~~~~l~~H~~~  270 (274)
                      |.|++|++.|.+...|.+|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            5666666666666666666665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.12  E-value=2e-06  Score=41.17  Aligned_cols=24  Identities=21%  Similarity=0.605  Sum_probs=16.3

Q ss_pred             eecCCCCccCCChhHHHHHHhhhc
Q psy4796         249 YACGKCAYRTAALPDLKLHLKNMH  272 (274)
Q Consensus       249 ~~C~~C~~~f~~~~~l~~H~~~~H  272 (274)
                      |.|++|++.|.+...|..|++.+|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            567777777777777777777765

...

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.06  E-value=2.1e-06  Score=40.65  Aligned_cols=23  Identities=35%  Similarity=0.807  Sum_probs=13.9

Q ss_pred             cccCcCccccCCchhHHHHHhhh
Q psy4796         221 FACSYCDYTCNQSSNLQTHLRIH  243 (274)
Q Consensus       221 ~~C~~C~~~f~~~~~l~~H~~~h  243 (274)
                      |.|+.|++.|.++..|.+|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            45666666666666666666543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.91  E-value=6.6e-06  Score=40.61  Aligned_cols=25  Identities=20%  Similarity=0.534  Sum_probs=16.3

Q ss_pred             ceecCCCCccCCChhHHHHHHhhhc
Q psy4796         248 EYACGKCAYRTAALPDLKLHLKNMH  272 (274)
Q Consensus       248 ~~~C~~C~~~f~~~~~l~~H~~~~H  272 (274)
                      +|.|..|++.|.+...|..|++.|+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            4666666666666666666666555

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.82  E-value=1.2e-05  Score=53.85  Aligned_cols=23  Identities=17%  Similarity=0.462  Sum_probs=11.9

Q ss_pred             ceecCCCCccCCChhHHHHHHhh
Q psy4796         248 EYACGKCAYRTAALPDLKLHLKN  270 (274)
Q Consensus       248 ~~~C~~C~~~f~~~~~l~~H~~~  270 (274)
                      .+.|.+|++.|.+...|..|++.
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~   72 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRS   72 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHH
T ss_pred             CCCCCccCCCCcCHHHHHHHHcC
Confidence            35555555555555555555553

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.77  E-value=1.7e-05  Score=37.78  Aligned_cols=23  Identities=35%  Similarity=0.816  Sum_probs=13.7

Q ss_pred             cccCcCccccCCchhHHHHHhhh
Q psy4796         221 FACSYCDYTCNQSSNLQTHLRIH  243 (274)
Q Consensus       221 ~~C~~C~~~f~~~~~l~~H~~~h  243 (274)
                      |.|++|++.|.+...|+.|+..|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            45666666666666666666654

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.72  E-value=1.8e-05  Score=39.04  Aligned_cols=25  Identities=40%  Similarity=0.686  Sum_probs=17.0

Q ss_pred             CcccCcCccccCCchhHHHHHhhhC
Q psy4796         220 PFACSYCDYTCNQSSNLQTHLRIHK  244 (274)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~h~  244 (274)
                      +|.|..|++.|.+...|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            4667777777777777777776654

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.70  E-value=2.3e-05  Score=52.55  Aligned_cols=73  Identities=19%  Similarity=0.440  Sum_probs=17.5

Q ss_pred             eeccccCCcchhhHHHHHhhhccccccccccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCCCcccCChhHHH
Q psy4796          30 TCLHCSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQ  109 (274)
Q Consensus        30 ~C~~C~~~f~~~~~~l~~H~~~~~~~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~  109 (274)
                      +|..|+..| .+...|..|+..      .|.-..+     ....+.....+..+..... ...+.|..|++.|.+...|.
T Consensus         1 ~C~~C~~~f-~~~~~l~~H~~~------~H~~~~~-----~~~~l~~~~~~~~~~~~~~-~~~~~C~~C~~~f~s~~~l~   67 (100)
T PF12756_consen    1 QCLFCDESF-SSVDDLLQHMKK------KHGFDIP-----DQKYLVDPNRLLNYLRKKV-KESFRCPYCNKTFRSREALQ   67 (100)
T ss_dssp             -------------------------------------------------------------SSEEBSSSS-EESSHHHHH
T ss_pred             Ccccccccc-cccccccccccc------ccccccc-----ccccccccccccccccccc-CCCCCCCccCCCCcCHHHHH
Confidence            477888888 778888888763      3332211     1111112223333332211 12577777777777777777


Q ss_pred             HHHhhh
Q psy4796         110 RHLLTH  115 (274)
Q Consensus       110 ~H~~~h  115 (274)
                      .|++.+
T Consensus        68 ~Hm~~~   73 (100)
T PF12756_consen   68 EHMRSK   73 (100)
T ss_dssp             HHHHHT
T ss_pred             HHHcCc
Confidence            777754

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.67  E-value=1.6e-05  Score=62.11  Aligned_cols=53  Identities=30%  Similarity=0.674  Sum_probs=42.0

Q ss_pred             CCCcccCc--CccccCCchhHHHHHhh-hC------------------CCCceecCCCCccCCChhHHHHHHhh
Q psy4796         218 DKPFACSY--CDYTCNQSSNLQTHLRI-HK------------------TEREYACGKCAYRTAALPDLKLHLKN  270 (274)
Q Consensus       218 ~~~~~C~~--C~~~f~~~~~l~~H~~~-h~------------------~~~~~~C~~C~~~f~~~~~l~~H~~~  270 (274)
                      +|||.|++  |.+.|.....|+.|+.. |-                  ..|||.|.+|+|.+.+...|+-|+.-
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~H  420 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRKH  420 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecccc
Confidence            58888866  88888888888888754 31                  34789999999999999999888543

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.59  E-value=5e-05  Score=36.19  Aligned_cols=24  Identities=46%  Similarity=0.876  Sum_probs=18.0

Q ss_pred             eecCCCCccCCChhHHHHHHhhhcC
Q psy4796         249 YACGKCAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       249 ~~C~~C~~~f~~~~~l~~H~~~~H~  273 (274)
                      |.|+.|+.... ...|.+|++.+|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            67888888887 8888888888875

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.57  E-value=2.2e-05  Score=61.43  Aligned_cols=24  Identities=17%  Similarity=0.357  Sum_probs=17.5

Q ss_pred             Ccceeccc--ccccccChHHHHHHHh
Q psy4796          62 KLQFLCLF--CSYVATARIAIKNHLS   85 (274)
Q Consensus        62 ~~~~~C~~--C~~~f~~~~~l~~H~~   85 (274)
                      +++|+|++  |+++|.++..|.-|+.
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~l  372 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHML  372 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhh
Confidence            47777777  7777777777777764

>smart00355 ZnF_C2H2 zinc finger

Probab=97.20  E-value=0.00031  Score=33.88  Aligned_cols=20  Identities=25%  Similarity=0.514  Sum_probs=8.6

Q ss_pred             ecCCCCccCCChhHHHHHHh
Q psy4796         250 ACGKCAYRTAALPDLKLHLK  269 (274)
Q Consensus       250 ~C~~C~~~f~~~~~l~~H~~  269 (274)
                      .|+.|++.|.+...|..|++
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        2 RCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCcchhCCHHHHHHHHH
Confidence            34444444444444444443

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.19  E-value=0.00033  Score=39.09  Aligned_cols=28  Identities=36%  Similarity=0.680  Sum_probs=10.3

Q ss_pred             CCCcccCcCccccCCchhHHHHHhhhCC
Q psy4796         218 DKPFACSYCDYTCNQSSNLQTHLRIHKT  245 (274)
Q Consensus       218 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~  245 (274)
                      +.|-.|++|+..+.+..+|++|+.++++
T Consensus        22 ~~PatCP~C~a~~~~srnLrRHle~~H~   49 (54)
T PF09237_consen   22 EQPATCPICGAVIRQSRNLRRHLEIRHF   49 (54)
T ss_dssp             S--EE-TTT--EESSHHHHHHHHHHHTT
T ss_pred             CCCCCCCcchhhccchhhHHHHHHHHhc
Confidence            3344444444444444444444444333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=97.15  E-value=0.00032  Score=33.83  Aligned_cols=23  Identities=30%  Similarity=0.720  Sum_probs=21.0

Q ss_pred             cccCcCccccCCchhHHHHHhhh
Q psy4796         221 FACSYCDYTCNQSSNLQTHLRIH  243 (274)
Q Consensus       221 ~~C~~C~~~f~~~~~l~~H~~~h  243 (274)
                      |.|..|++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            68999999999999999999865

>PRK04860 hypothetical protein; Provisional

Probab=97.05  E-value=0.00046  Score=49.97  Aligned_cols=37  Identities=24%  Similarity=0.665  Sum_probs=23.0

Q ss_pred             CcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCC
Q psy4796         220 PFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAA  260 (274)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~  260 (274)
                      +|.|. |+.   ....+++|.++|.++++|.|..|+..|..
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~  155 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVF  155 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEE
Confidence            46665 665   44556666666666666666666666543

>KOG2231|consensus

Probab=97.04  E-value=0.0021  Score=56.52  Aligned_cols=48  Identities=21%  Similarity=0.313  Sum_probs=31.7

Q ss_pred             cccCCCCccccCHHHHHHHHhhccCCCCcccCcCc------cccCCchhHHHHHhhhC
Q psy4796         193 FVCFACPYATQYACYIKTHVMTHTGDKPFACSYCD------YTCNQSSNLQTHLRIHK  244 (274)
Q Consensus       193 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~------~~f~~~~~l~~H~~~h~  244 (274)
                      -.|..|...|-....|..|++.++    |.|..|.      ..|...+.|..|.+.++
T Consensus       183 p~C~~C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  183 PLCKFCHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             ccchhhhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC
Confidence            457777777777777777777665    4555553      45556667777776655

>KOG1146|consensus

Probab=97.03  E-value=0.00062  Score=63.41  Aligned_cols=108  Identities=19%  Similarity=0.324  Sum_probs=80.0

Q ss_pred             eeeccccCCcchhhHHHHHhhhccccccccccCCcceecccccccccChHHHHHHHhhcC--------------------
Q psy4796          29 VTCLHCSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHL--------------------   88 (274)
Q Consensus        29 ~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--------------------   88 (274)
                      ..|.-|+..+ .....+..|+..      .++..+.|+|+.|+..|.....|..||+..+                    
T Consensus       437 ~e~~~~e~~~-~s~r~~~~~t~~------L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg  509 (1406)
T KOG1146|consen  437 VELTKAEPLL-ESKRSLEGQTVV------LHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARG  509 (1406)
T ss_pred             ccccchhhhh-hhhcccccceee------eecccccccCCccchhhhhHHHhhhcccccccccchhHhHhcccccccccc
Confidence            4456666666 666666666553      6666778888888888888888888887621                    


Q ss_pred             -----CCCcccCCCCCcccCChhHHHHHHhh--hcC-----------------------------------------CCC
Q psy4796          89 -----GWKPYKCPHCDHCFTQKVVLQRHLLT--HTG-----------------------------------------EKP  120 (274)
Q Consensus        89 -----~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~-----------------------------------------~~~  120 (274)
                           +.++|.|..|...+.++.+|-+|++.  |..                                         ...
T Consensus       510 ~~~~~~~~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~  589 (1406)
T KOG1146|consen  510 EVYRCPGKPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPS  589 (1406)
T ss_pred             ccccCCCCcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCC
Confidence                 23578999999999999999999753  111                                         122


Q ss_pred             ccCCCCCCccccHHHHHHHHHHH
Q psy4796         121 FACHLCPYRASRKYYITAHLNSL  143 (274)
Q Consensus       121 ~~C~~C~~~f~~~~~l~~H~~~~  143 (274)
                      |.|..|+++..-..+|+.|+...
T Consensus       590 ~~C~vc~yetniarnlrihmtss  612 (1406)
T KOG1146|consen  590 WRCEVCSYETNIARNLRIHMTAS  612 (1406)
T ss_pred             cchhhhcchhhhhhccccccccC
Confidence            88999999998888899888653

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.03  E-value=0.00051  Score=38.33  Aligned_cols=37  Identities=19%  Similarity=0.348  Sum_probs=23.9

Q ss_pred             HHHHhhh-CCCCceecCCCCccCCChhHHHHHHhhhcC
Q psy4796         237 QTHLRIH-KTEREYACGKCAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       237 ~~H~~~h-~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  273 (274)
                      ..+.+.+ ..+.|-.||+|+..+....+|.+|+...|+
T Consensus        12 ~~~~k~~~~S~~PatCP~C~a~~~~srnLrRHle~~H~   49 (54)
T PF09237_consen   12 TKKPKSKSQSEQPATCPICGAVIRQSRNLRRHLEIRHF   49 (54)
T ss_dssp             ----CCCCTTS--EE-TTT--EESSHHHHHHHHHHHTT
T ss_pred             hhHHHHhhccCCCCCCCcchhhccchhhHHHHHHHHhc
Confidence            4444443 456789999999999999999999998886

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.94  E-value=0.00044  Score=33.20  Aligned_cols=18  Identities=28%  Similarity=0.781  Sum_probs=7.5

Q ss_pred             cCcCccccCCchhHHHHH
Q psy4796         223 CSYCDYTCNQSSNLQTHL  240 (274)
Q Consensus       223 C~~C~~~f~~~~~l~~H~  240 (274)
                      |.+|++.|.+...|+.|+
T Consensus         3 C~~C~~~f~s~~~~~~H~   20 (25)
T PF12874_consen    3 CDICNKSFSSENSLRQHL   20 (25)
T ss_dssp             ETTTTEEESSHHHHHHHH
T ss_pred             CCCCCCCcCCHHHHHHHH
Confidence            444444444444444443

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.92  E-value=0.00061  Score=32.67  Aligned_cols=23  Identities=22%  Similarity=0.514  Sum_probs=21.0

Q ss_pred             eecCCCCccCCChhHHHHHHhhh
Q psy4796         249 YACGKCAYRTAALPDLKLHLKNM  271 (274)
Q Consensus       249 ~~C~~C~~~f~~~~~l~~H~~~~  271 (274)
                      |.|.+|++.|.+...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            68999999999999999999754

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.60  E-value=0.0011  Score=31.37  Aligned_cols=23  Identities=39%  Similarity=0.933  Sum_probs=13.7

Q ss_pred             cccCcCccccCCchhHHHHHhhhC
Q psy4796         221 FACSYCDYTCNQSSNLQTHLRIHK  244 (274)
Q Consensus       221 ~~C~~C~~~f~~~~~l~~H~~~h~  244 (274)
                      |.|+.|+.... ...|.+|++.|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            56777776666 667777776643

>KOG2785|consensus

Probab=96.55  E-value=0.01  Score=48.25  Aligned_cols=51  Identities=18%  Similarity=0.363  Sum_probs=37.6

Q ss_pred             ccccCCCCccccCHHHHHHHHhhccCC-----------------------CCcccCcCc---cccCCchhHHHHHhh
Q psy4796         192 KFVCFACPYATQYACYIKTHVMTHTGD-----------------------KPFACSYCD---YTCNQSSNLQTHLRI  242 (274)
Q Consensus       192 ~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~  242 (274)
                      |-.|-.|+..+.+......||..+++-                       .-+.|..|.   +.|.+..+.++||..
T Consensus       166 Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~  242 (390)
T KOG2785|consen  166 PTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD  242 (390)
T ss_pred             CcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence            466888888888888888888877652                       236677777   777777777777765

>PRK04860 hypothetical protein; Provisional

Probab=96.49  E-value=0.0014  Score=47.58  Aligned_cols=40  Identities=18%  Similarity=0.355  Sum_probs=34.6

Q ss_pred             CccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCch
Q psy4796         191 KKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSS  234 (274)
Q Consensus       191 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~  234 (274)
                      -+|.|. |+.   ....+..|.++|+++++|.|..|+..|....
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence            369998 997   6677899999999999999999999887654

>KOG2785|consensus

Probab=96.46  E-value=0.0085  Score=48.72  Aligned_cols=52  Identities=17%  Similarity=0.383  Sum_probs=43.6

Q ss_pred             CCcccCcCccccCCchhHHHHHhhhCCCC-----------------------ceecCCCC---ccCCChhHHHHHHhh
Q psy4796         219 KPFACSYCDYTCNQSSNLQTHLRIHKTER-----------------------EYACGKCA---YRTAALPDLKLHLKN  270 (274)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-----------------------~~~C~~C~---~~f~~~~~l~~H~~~  270 (274)
                      -|-.|..|++.+.+...-..||..+++-.                       -+.|-.|.   +.|.+...+..||..
T Consensus       165 ~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~  242 (390)
T KOG2785|consen  165 IPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD  242 (390)
T ss_pred             CCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence            35789999999999999999998876531                       27888888   999999999999964

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.30  E-value=0.0012  Score=32.34  Aligned_cols=21  Identities=29%  Similarity=0.575  Sum_probs=12.9

Q ss_pred             eecCCCCccCCChhHHHHHHh
Q psy4796         249 YACGKCAYRTAALPDLKLHLK  269 (274)
Q Consensus       249 ~~C~~C~~~f~~~~~l~~H~~  269 (274)
                      |.|.+|++.|.+...+..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            456666666666666666654

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.26  E-value=0.008  Score=48.09  Aligned_cols=72  Identities=25%  Similarity=0.476  Sum_probs=53.8

Q ss_pred             ccCCCCccccCHHHHHHHHhhccCCCCcccCcCcc-------ccCCchhHHHHHhhhCCCCceecCC--CC----ccCCC
Q psy4796         194 VCFACPYATQYACYIKTHVMTHTGDKPFACSYCDY-------TCNQSSNLQTHLRIHKTEREYACGK--CA----YRTAA  260 (274)
Q Consensus       194 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~-------~f~~~~~l~~H~~~h~~~~~~~C~~--C~----~~f~~  260 (274)
                      .|..|...|-+...|.+|++.-+.    .|-+|++       -|.+..+|.+|.+.    .-|.|.+  |.    ..|++
T Consensus       222 ~C~FC~~~FYdDDEL~~HcR~~HE----~ChICD~v~p~~~QYFK~Y~~Le~HF~~----~hy~ct~qtc~~~k~~vf~~  293 (493)
T COG5236         222 LCIFCKIYFYDDDELRRHCRLRHE----ACHICDMVGPIRYQYFKSYEDLEAHFRN----AHYCCTFQTCRVGKCYVFPY  293 (493)
T ss_pred             hhhhccceecChHHHHHHHHhhhh----hhhhhhccCccchhhhhCHHHHHHHhhc----CceEEEEEEEecCcEEEecc
Confidence            699999999999999999986552    3555543       45666777777653    3377755  54    37999


Q ss_pred             hhHHHHHHhhhcC
Q psy4796         261 LPDLKLHLKNMHL  273 (274)
Q Consensus       261 ~~~l~~H~~~~H~  273 (274)
                      ...|..|+-+-|+
T Consensus       294 ~~el~~h~~~~h~  306 (493)
T COG5236         294 HTELLEHLTRFHK  306 (493)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988776

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.93  E-value=0.0033  Score=30.75  Aligned_cols=21  Identities=29%  Similarity=0.423  Sum_probs=13.2

Q ss_pred             cccCCCCccccCHHHHHHHHh
Q psy4796         193 FVCFACPYATQYACYIKTHVM  213 (274)
Q Consensus       193 ~~C~~C~~~f~~~~~l~~H~~  213 (274)
                      |.|..|++.|.+...|..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            556666666666666666654

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2482|consensus

Probab=95.90  E-value=0.067  Score=42.95  Aligned_cols=78  Identities=18%  Similarity=0.244  Sum_probs=46.4

Q ss_pred             ccCCCCCCccccHHHHHHHHHHHHHHHHHHhHhhcCCCccCCCCCCCCCCChhhhhhhccCCCCCcccCCCccccCCCCc
Q psy4796         121 FACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPY  200 (274)
Q Consensus       121 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~C~~C~~  200 (274)
                      ..|-.|.....+...+..||+..|.-.+.+-    ...+.     -.|-. .-.++.       -...+.....|..|.-
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki----~sd~~-----Ln~Yq-rvrviN-------yiRkq~~~~~c~~cd~  342 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKI----QSDYS-----LNFYQ-RVRVIN-------YIRKQKKKSRCAECDL  342 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHHhhHHhh----ccccc-----cchhh-hhhHHH-------HHHHHhhccccccccc
Confidence            5899999999999999999998776443322    11110     00000 000100       1112233456788888


Q ss_pred             cccCHHHHHHHHhhc
Q psy4796         201 ATQYACYIKTHVMTH  215 (274)
Q Consensus       201 ~f~~~~~l~~H~~~h  215 (274)
                      .|-....|..|+..+
T Consensus       343 ~F~~e~~l~~hm~e~  357 (423)
T KOG2482|consen  343 SFWKEPGLLIHMVED  357 (423)
T ss_pred             cccCcchhhhhcccc
Confidence            888888888888643

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=95.89  E-value=0.0049  Score=29.47  Aligned_cols=20  Identities=20%  Similarity=0.408  Sum_probs=11.3

Q ss_pred             eeeccccCCcchhhHHHHHhhh
Q psy4796          29 VTCLHCSLTTPCVMKDMIRHGR   50 (274)
Q Consensus        29 ~~C~~C~~~f~~~~~~l~~H~~   50 (274)
                      ..|+.||+.|  ..+.|..|+.
T Consensus         3 ~~C~~CgR~F--~~~~l~~H~~   22 (25)
T PF13913_consen    3 VPCPICGRKF--NPDRLEKHEK   22 (25)
T ss_pred             CcCCCCCCEE--CHHHHHHHHH
Confidence            3456666666  5555555554

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=95.56  E-value=0.01  Score=28.32  Aligned_cols=19  Identities=26%  Similarity=0.434  Sum_probs=11.1

Q ss_pred             ecCCCCccCCChhHHHHHHh
Q psy4796         250 ACGKCAYRTAALPDLKLHLK  269 (274)
Q Consensus       250 ~C~~C~~~f~~~~~l~~H~~  269 (274)
                      .|+.||..| ....|.+|++
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHH
Confidence            466666666 4555666654

>KOG1146|consensus

Probab=95.56  E-value=0.009  Score=56.12  Aligned_cols=168  Identities=20%  Similarity=0.301  Sum_probs=104.7

Q ss_pred             cccccccccChHHHHHHHh-hcCCCCcccCCCCCcccCChhHHHHHHhhhcC-------------------------CCC
Q psy4796          67 CLFCSYVATARIAIKNHLS-SHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTG-------------------------EKP  120 (274)
Q Consensus        67 C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-------------------------~~~  120 (274)
                      |..|+..+.....+.-|+. .+...+.++|+.|+..|+....|..||+..+.                         .++
T Consensus       439 ~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p  518 (1406)
T KOG1146|consen  439 LTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKP  518 (1406)
T ss_pred             ccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCc
Confidence            3444444444444433332 23445789999999999999999999987221                         366


Q ss_pred             ccCCCCCCccccHHHHHHHHHHHHHHHHHHhHh--hcC----CCc-cCCCCCCCCCCChhhhhhhccCCCCCc-ccCCCc
Q psy4796         121 FACHLCPYRASRKYYITAHLNSLLSALLLQHFL--ASQ----PRR-KCVHCSEPISSDMSEIIEHCLVCPNAT-RTDKKK  192 (274)
Q Consensus       121 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~--~~~----~~~-~c~~c~~~~~~~~~~l~~h~~~~~~~~-~~~~~~  192 (274)
                      |.|..|..++..+..|..|++............  .+.    .+- .+..+...-+...+.         -.. ....-.
T Consensus       519 ~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~a---------gs~~pktkP~  589 (1406)
T KOG1146|consen  519 YPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSA---------GSSGPKTKPS  589 (1406)
T ss_pred             ccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCC---------CCCCCCCCCC
Confidence            899999999999999999998644322211100  110    000 021222111110000         011 122335


Q ss_pred             cccCCCCccccCHHHHHHHHh-hccCCCCcccCcCccccCCchhHHHHHhhh
Q psy4796         193 FVCFACPYATQYACYIKTHVM-THTGDKPFACSYCDYTCNQSSNLQTHLRIH  243 (274)
Q Consensus       193 ~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  243 (274)
                      +.|..|+..-.-..+|+.|+. .++...|..+..+.-.+.....+..+.+.+
T Consensus       590 ~~C~vc~yetniarnlrihmtss~~s~~p~~~Lq~~it~~l~~~~~~~~~lp  641 (1406)
T KOG1146|consen  590 WRCEVCSYETNIARNLRIHMTASPSSSPPSLVLQQNITSSLASLLGGQGRLP  641 (1406)
T ss_pred             cchhhhcchhhhhhccccccccCCCCCChHHHhhhcchhhccccccCcCCCC
Confidence            889999999999999999987 556566678888888887777776666665

>KOG2231|consensus

Probab=95.43  E-value=0.027  Score=49.86  Aligned_cols=45  Identities=24%  Similarity=0.408  Sum_probs=29.2

Q ss_pred             cCCCCCcccCChhHHHHHHhhhcCCCCccCCCC------CCccccHHHHHHHHHH
Q psy4796          94 KCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC------PYRASRKYYITAHLNS  142 (274)
Q Consensus        94 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C------~~~f~~~~~l~~H~~~  142 (274)
                      .|..|...|-....|.+|++.++    |.|..|      +.-|.....|..|.+.
T Consensus       184 ~C~~C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~  234 (669)
T KOG2231|consen  184 LCKFCHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRK  234 (669)
T ss_pred             cchhhhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhh
Confidence            57777777777777777777654    445555      2345666667777655

>KOG2482|consensus

Probab=95.36  E-value=0.021  Score=45.65  Aligned_cols=90  Identities=17%  Similarity=0.332  Sum_probs=63.3

Q ss_pred             CeeeccccCCcchhhHHHHHhhhcccccc------cc-------cc--CCcceecccccccccChHHHHHHHhhc--CC-
Q psy4796          28 DVTCLHCSLTTPCVMKDMIRHGRLCEFNS------VV-------TS--AKLQFLCLFCSYVATARIAIKNHLSSH--LG-   89 (274)
Q Consensus        28 ~~~C~~C~~~f~~~~~~l~~H~~~~~~~~------~~-------h~--~~~~~~C~~C~~~f~~~~~l~~H~~~h--~~-   89 (274)
                      -..|..|+..+..++.....|+...++-.      -+       |.  .-..+.|-.|.+.|.++..|+.||+..  .. 
T Consensus       144 slqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrkK~Hrri  223 (423)
T KOG2482|consen  144 SLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRKKRHRRI  223 (423)
T ss_pred             eeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHhccCccc
Confidence            36799998888677788888876433210      00       00  111377999999999999999999752  10 


Q ss_pred             ---------------------------------------------------CCc--ccCCCCCcccCChhHHHHHHhhhc
Q psy4796          90 ---------------------------------------------------WKP--YKCPHCDHCFTQKVVLQRHLLTHT  116 (274)
Q Consensus        90 ---------------------------------------------------~~~--~~C~~C~~~f~~~~~l~~H~~~h~  116 (274)
                                                                         ..+  .+|-.|.....+...|..||...+
T Consensus       224 nPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~en~~~l~eHmk~vH  303 (423)
T KOG2482|consen  224 NPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNFYENPVFLFEHMKIVH  303 (423)
T ss_pred             CCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccchhhHHHHHHHHHHHH
Confidence                                                               011  489999999999999999998644


Q ss_pred             C
Q psy4796         117 G  117 (274)
Q Consensus       117 ~  117 (274)
                      .
T Consensus       304 e  304 (423)
T KOG2482|consen  304 E  304 (423)
T ss_pred             H
Confidence            3

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=95.15  E-value=0.036  Score=37.67  Aligned_cols=85  Identities=22%  Similarity=0.365  Sum_probs=48.2

Q ss_pred             cCCCccccCCCCccccCHHHHHHHHh-hccCCCCcccCcCccccCCchhHH---HHHhh-hCCC---------Cceec--
Q psy4796         188 TDKKKFVCFACPYATQYACYIKTHVM-THTGDKPFACSYCDYTCNQSSNLQ---THLRI-HKTE---------REYAC--  251 (274)
Q Consensus       188 ~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~---~H~~~-h~~~---------~~~~C--  251 (274)
                      ...+...|..|+..... +.+..|++ .|+..+...-..=...+.....|.   ..+.. ..+.         ..|.|  
T Consensus         7 ~~~~vlIC~~C~~av~~-~~v~~HL~~~H~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~p~~~~~Pi~gLp~~~G~~C~~   85 (109)
T PF12013_consen    7 PEYRVLICRQCQYAVQP-SEVESHLRKRHHILKSQERQRIVEAIRQWPDLLPDPDDLQIPPDPSPPIPGLPVYDGYRCQC   85 (109)
T ss_pred             CcCCEEEeCCCCcccCc-hHHHHHHHHhcccccHHHHHHHHHHHHhhhhcccCccccCCCCCCCCcCCCCCCCCCeeeec
Confidence            34456789999988876 78899988 444321110000000000000000   00000 0000         23899  


Q ss_pred             --CCCCccCCChhHHHHHHhhhcC
Q psy4796         252 --GKCAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       252 --~~C~~~f~~~~~l~~H~~~~H~  273 (274)
                        +.|++.+.+...|.+|.+.+||
T Consensus        86 ~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   86 DPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CCCCCCcEeccHHHHHHHHHHhcC
Confidence              9999999999999999999997

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>KOG2893|consensus

Probab=95.11  E-value=0.0056  Score=46.27  Aligned_cols=42  Identities=21%  Similarity=0.340  Sum_probs=24.7

Q ss_pred             eeccccCCcchhhHHHHHhhhccccccccccCCcceecccccccccChHHHHHH
Q psy4796          30 TCLHCSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNH   83 (274)
Q Consensus        30 ~C~~C~~~f~~~~~~l~~H~~~~~~~~~~h~~~~~~~C~~C~~~f~~~~~l~~H   83 (274)
                      .|+.|++.| .+...|+.|++           .+-|+|.+|-++..+--.|.+|
T Consensus        12 wcwycnref-ddekiliqhqk-----------akhfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   12 WCWYCNREF-DDEKILIQHQK-----------AKHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             eeeeccccc-chhhhhhhhhh-----------hccceeeeehhhhccCCCceee
Confidence            366777777 66666666666           3446666666554444444433

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=94.93  E-value=0.018  Score=29.67  Aligned_cols=24  Identities=21%  Similarity=0.791  Sum_probs=13.6

Q ss_pred             cccCcCccccCCchhHHHHHhhhCCCCceecCCCCc
Q psy4796         221 FACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAY  256 (274)
Q Consensus       221 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~  256 (274)
                      |.|..||..+....            .+..||+|+.
T Consensus         2 ~~C~~CGy~y~~~~------------~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGEE------------APWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCCc------------CCCcCcCCCC
Confidence            56666665554322            5566666664

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.76  E-value=0.055  Score=43.49  Aligned_cols=19  Identities=26%  Similarity=0.616  Sum_probs=12.0

Q ss_pred             eccccCCcchhhHHHHHhhh
Q psy4796          31 CLHCSLTTPCVMKDMIRHGR   50 (274)
Q Consensus        31 C~~C~~~f~~~~~~l~~H~~   50 (274)
                      |..|+..| .+.++|..|++
T Consensus       223 C~FC~~~F-YdDDEL~~HcR  241 (493)
T COG5236         223 CIFCKIYF-YDDDELRRHCR  241 (493)
T ss_pred             hhhcccee-cChHHHHHHHH
Confidence            66666666 66666666665

>smart00451 ZnF_U1 U1-like zinc finger

Probab=94.40  E-value=0.037  Score=28.77  Aligned_cols=22  Identities=23%  Similarity=0.433  Sum_probs=16.5

Q ss_pred             ceecCCCCccCCChhHHHHHHh
Q psy4796         248 EYACGKCAYRTAALPDLKLHLK  269 (274)
Q Consensus       248 ~~~C~~C~~~f~~~~~l~~H~~  269 (274)
                      +|.|.+|++.|.+...+..|++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            4678888888877777777764

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=93.72  E-value=0.047  Score=28.34  Aligned_cols=23  Identities=26%  Similarity=0.611  Sum_probs=16.3

Q ss_pred             CcccCcCccccCCchhHHHHHhh
Q psy4796         220 PFACSYCDYTCNQSSNLQTHLRI  242 (274)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~  242 (274)
                      +|.|..|+..|.+..++..|+..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            46677777777777777777654

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=93.61  E-value=0.028  Score=31.98  Aligned_cols=26  Identities=15%  Similarity=0.470  Sum_probs=15.3

Q ss_pred             CCCCcccCcCccccCCchhHHHHHhh
Q psy4796         217 GDKPFACSYCDYTCNQSSNLQTHLRI  242 (274)
Q Consensus       217 ~~~~~~C~~C~~~f~~~~~l~~H~~~  242 (274)
                      |+..+.|+.||..|....++.+|+..
T Consensus        14 GE~~lrCPRC~~~FR~~K~Y~RHVNK   39 (65)
T COG4049          14 GEEFLRCPRCGMVFRRRKDYIRHVNK   39 (65)
T ss_pred             CceeeeCCchhHHHHHhHHHHHHhhH
Confidence            44456666666666666666666543

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=93.00  E-value=0.029  Score=48.13  Aligned_cols=151  Identities=25%  Similarity=0.374  Sum_probs=85.2

Q ss_pred             cccCCCCCcccCChhHHHHHHh--hhcCC--CCccCC--CCCCccccHHHHHHHHHHHHHHHHHHhHhhcCCCccCC--C
Q psy4796          92 PYKCPHCDHCFTQKVVLQRHLL--THTGE--KPFACH--LCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCV--H  163 (274)
Q Consensus        92 ~~~C~~C~~~f~~~~~l~~H~~--~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~c~--~  163 (274)
                      ++.|..|...|.....+..|.+  .|..+  +++.|+  .|++.|.....+..|...+          ....+..+.  .
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~  358 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLH----------TSISPAKEKLLN  358 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccc----------cCCCcccccccc
Confidence            4666777777777777777776  56666  677777  5777776666666665542          222222221  1


Q ss_pred             CCCCCCCChh----hhhhhccCCCCCcccCCCcccc--CCCCccccCHHHHHHHHhhccCCC--CcccCcCccccCCchh
Q psy4796         164 CSEPISSDMS----EIIEHCLVCPNATRTDKKKFVC--FACPYATQYACYIKTHVMTHTGDK--PFACSYCDYTCNQSSN  235 (274)
Q Consensus       164 c~~~~~~~~~----~l~~h~~~~~~~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~  235 (274)
                      +...+.....    .....     .........+.+  ..|...+.....+..|...+....  .+.+..|...|.....
T Consensus       359 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (467)
T COG5048         359 SSSKFSPLLNNEPPQSLQQ-----YKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYN  433 (467)
T ss_pred             CccccccccCCCCccchhh-----ccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCccc
Confidence            2222221000    00110     112222233333  235566666666667766666555  3556778888888888


Q ss_pred             HHHHHhhhCCCCceecCCCCcc
Q psy4796         236 LQTHLRIHKTEREYACGKCAYR  257 (274)
Q Consensus       236 l~~H~~~h~~~~~~~C~~C~~~  257 (274)
                      +..|++.|....++.|..++..
T Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~  455 (467)
T COG5048         434 LIPHKKIHTNHAPLLCSILKSF  455 (467)
T ss_pred             ccccccccccCCceeecccccc
Confidence            8888888877776666555533

>TIGR00622 ssl1 transcription factor ssl1

Probab=92.82  E-value=0.32  Score=32.78  Aligned_cols=54  Identities=17%  Similarity=0.403  Sum_probs=31.4

Q ss_pred             ccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCC
Q psy4796         194 VCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCA  255 (274)
Q Consensus       194 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~  255 (274)
                      .|-.|+..|.......  ...-.....|+|+.|...|=..-+...|...|.      |+-|.
T Consensus        57 ~C~~C~~~f~~~~~~~--~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~------CPGC~  110 (112)
T TIGR00622        57 FCFGCQGPFPKPPVSP--FDELKDSHRYVCAVCKNVFCVDCDVFVHESLHC------CPGCI  110 (112)
T ss_pred             cccCcCCCCCCccccc--ccccccccceeCCCCCCccccccchhhhhhccC------CcCCC
Confidence            4777777776542110  000112335788888888777777777776664      66554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2893|consensus

Probab=92.80  E-value=0.028  Score=42.65  Aligned_cols=47  Identities=21%  Similarity=0.471  Sum_probs=35.7

Q ss_pred             ccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHH-HhhhC
Q psy4796         194 VCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTH-LRIHK  244 (274)
Q Consensus       194 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~  244 (274)
                      .|..|++.|.+..-|..|++..+    |.|.+|.+..-+-..|..| +++|.
T Consensus        12 wcwycnrefddekiliqhqkakh----fkchichkkl~sgpglsihcmqvhk   59 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQKAKH----FKCHICHKKLFSGPGLSIHCMQVHK   59 (341)
T ss_pred             eeeecccccchhhhhhhhhhhcc----ceeeeehhhhccCCCceeehhhhhh
Confidence            58999999999988888876544    8899998776666667666 45553

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=92.22  E-value=0.093  Score=27.15  Aligned_cols=24  Identities=25%  Similarity=0.682  Sum_probs=14.2

Q ss_pred             cccCcCccccCCchhHHHHHhhhCCCCceecCCCCc
Q psy4796         221 FACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAY  256 (274)
Q Consensus       221 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~  256 (274)
                      |.|..||..+...            +.|..||+|+.
T Consensus         3 ~~C~~CG~i~~g~------------~~p~~CP~Cg~   26 (34)
T cd00729           3 WVCPVCGYIHEGE------------EAPEKCPICGA   26 (34)
T ss_pred             EECCCCCCEeECC------------cCCCcCcCCCC
Confidence            6677777654432            14556777775

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=92.06  E-value=0.14  Score=43.94  Aligned_cols=153  Identities=21%  Similarity=0.308  Sum_probs=73.8

Q ss_pred             ceecccccccccChHHHHHHHh--hcCCC--CcccCC--CCCcccCChhHHHHHHhhhcCCCCccCCCC--CCccccHHH
Q psy4796          64 QFLCLFCSYVATARIAIKNHLS--SHLGW--KPYKCP--HCDHCFTQKVVLQRHLLTHTGEKPFACHLC--PYRASRKYY  135 (274)
Q Consensus        64 ~~~C~~C~~~f~~~~~l~~H~~--~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C--~~~f~~~~~  135 (274)
                      ++.|..|...|.....+..|..  .|.++  +++.|+  .|++.|.....+..|...|....++.+..-  ...+.....
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLN  368 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCccccccccC
Confidence            4555555555555555555555  45555  555565  466666666666666555555544443222  222211111


Q ss_pred             HHHHHHHHHHHHHHHhHhhcCCCccCC--CCCCCCCCChhhhhhhccCCCCCcccCCC--ccccCCCCccccCHHHHHHH
Q psy4796         136 ITAHLNSLLSALLLQHFLASQPRRKCV--HCSEPISSDMSEIIEHCLVCPNATRTDKK--KFVCFACPYATQYACYIKTH  211 (274)
Q Consensus       136 l~~H~~~~~~~~~~~~~~~~~~~~~c~--~c~~~~~~~~~~l~~h~~~~~~~~~~~~~--~~~C~~C~~~f~~~~~l~~H  211 (274)
                      -..+.....     ...........+.  .|...+.. ...+..+     ...+....  .+.+..|...+.....+..|
T Consensus       369 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (467)
T COG5048         369 NEPPQSLQQ-----YKDLKNDKKSETLSNSCIRNFKR-DSNLSLH-----IITHLSFRPYNCKNPPCSKSFNRHYNLIPH  437 (467)
T ss_pred             CCCccchhh-----ccCccCCccccccccchhhhhcc-ccccccc-----cccccccCCcCCCCCcchhhccCccccccc
Confidence            000000000     0000111111111  12222222 2222222     33333333  46678899999999999999


Q ss_pred             HhhccCCCCcccCcCc
Q psy4796         212 VMTHTGDKPFACSYCD  227 (274)
Q Consensus       212 ~~~h~~~~~~~C~~C~  227 (274)
                      .+.+....++.|..++
T Consensus       438 ~~~~~~~~~~~~~~~~  453 (467)
T COG5048         438 KKIHTNHAPLLCSILK  453 (467)
T ss_pred             ccccccCCceeecccc
Confidence            9988877776665544

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=91.51  E-value=0.12  Score=34.80  Aligned_cols=14  Identities=21%  Similarity=0.636  Sum_probs=6.9

Q ss_pred             CCcccCcCccccCC
Q psy4796         219 KPFACSYCDYTCNQ  232 (274)
Q Consensus       219 ~~~~C~~C~~~f~~  232 (274)
                      .|..|+.||..|.-
T Consensus        25 ~PivCP~CG~~~~~   38 (108)
T PF09538_consen   25 DPIVCPKCGTEFPP   38 (108)
T ss_pred             CCccCCCCCCccCc
Confidence            44455555555443

The function of members of this family is unknown.

>KOG4173|consensus

Probab=91.08  E-value=0.075  Score=39.44  Aligned_cols=47  Identities=19%  Similarity=0.468  Sum_probs=24.2

Q ss_pred             ccCCCCccccCHHHHHHHHhhcc----------CCCCccc--CcCccccCCchhHHHHH
Q psy4796         194 VCFACPYATQYACYIKTHVMTHT----------GDKPFAC--SYCDYTCNQSSNLQTHL  240 (274)
Q Consensus       194 ~C~~C~~~f~~~~~l~~H~~~h~----------~~~~~~C--~~C~~~f~~~~~l~~H~  240 (274)
                      .|.+|.+.|.+...|..|+...+          |.-.|+|  ..|+..|....+.+.|+
T Consensus       108 sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KFkT~r~RkdH~  166 (253)
T KOG4173|consen  108 SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKFKTSRDRKDHM  166 (253)
T ss_pred             hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhhhhhhhhhhHH
Confidence            45666666666666666654222          2233555  23555555555555554

>TIGR00622 ssl1 transcription factor ssl1

Probab=90.97  E-value=0.88  Score=30.72  Aligned_cols=50  Identities=22%  Similarity=0.430  Sum_probs=33.6

Q ss_pred             ccCCCCCCCCCCChhhhhhhccCCCCCcccCCCccccCCCCccccCHHHHHHHHhhcc
Q psy4796         159 RKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHT  216 (274)
Q Consensus       159 ~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  216 (274)
                      ..|-.|...|...... .       .........|.|+.|...|-..-....|...|.
T Consensus        56 ~~C~~C~~~f~~~~~~-~-------~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~  105 (112)
T TIGR00622        56 RFCFGCQGPFPKPPVS-P-------FDELKDSHRYVCAVCKNVFCVDCDVFVHESLHC  105 (112)
T ss_pred             CcccCcCCCCCCcccc-c-------ccccccccceeCCCCCCccccccchhhhhhccC
Confidence            3488888888752110 0       011234557999999999998888888887775

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=90.97  E-value=0.23  Score=36.22  Aligned_cols=36  Identities=14%  Similarity=0.324  Sum_probs=27.1

Q ss_pred             cCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCC
Q psy4796         216 TGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAA  260 (274)
Q Consensus       216 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~  260 (274)
                      ....-|.|+.|+..|+...++.         ..|.||.||.....
T Consensus       105 ~~~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~L~~  140 (158)
T TIGR00373       105 TNNMFFICPNMCVRFTFNEAME---------LNFTCPRCGAMLDY  140 (158)
T ss_pred             cCCCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCEeee
Confidence            3456688999999888888774         36899999986543

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PHA00626 hypothetical protein

Probab=90.94  E-value=0.14  Score=29.28  Aligned_cols=17  Identities=24%  Similarity=0.589  Sum_probs=11.5

Q ss_pred             CCCccccCCCCccccCH
Q psy4796         189 DKKKFVCFACPYATQYA  205 (274)
Q Consensus       189 ~~~~~~C~~C~~~f~~~  205 (274)
                      ....|.|+.||..|+..
T Consensus        20 ~snrYkCkdCGY~ft~~   36 (59)
T PHA00626         20 WSDDYVCCDCGYNDSKD   36 (59)
T ss_pred             cCcceEcCCCCCeechh
Confidence            35567777777777643

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=90.75  E-value=0.36  Score=28.11  Aligned_cols=33  Identities=27%  Similarity=0.675  Sum_probs=17.0

Q ss_pred             CccccCCCCccccCHHHHHHHHhhccCCCCcccCcCcc
Q psy4796         191 KKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDY  228 (274)
Q Consensus       191 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~  228 (274)
                      ..|.|+.||.....+..--     -.-..+|.|+.||.
T Consensus        26 v~F~CPnCGe~~I~Rc~~C-----Rk~g~~Y~Cp~CGF   58 (61)
T COG2888          26 VKFPCPNCGEVEIYRCAKC-----RKLGNPYRCPKCGF   58 (61)
T ss_pred             eEeeCCCCCceeeehhhhH-----HHcCCceECCCcCc
Confidence            3477888886544332111     11134577777663

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=90.66  E-value=0.097  Score=29.86  Aligned_cols=31  Identities=19%  Similarity=0.237  Sum_probs=20.5

Q ss_pred             ccCCCccccCCCCccccCHHHHHHHHhhccC
Q psy4796         187 RTDKKKFVCFACPYATQYACYIKTHVMTHTG  217 (274)
Q Consensus       187 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  217 (274)
                      ..++.-+.|+-||..|+.......|...-++
T Consensus        12 RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          12 RDGEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             cCCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            3455566777777777777777777764443

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=90.33  E-value=0.21  Score=24.05  Aligned_cols=10  Identities=30%  Similarity=0.849  Sum_probs=5.7

Q ss_pred             ecCCCCccCC
Q psy4796         250 ACGKCAYRTA  259 (274)
Q Consensus       250 ~C~~C~~~f~  259 (274)
                      .|+.||+.|.
T Consensus        16 ~Cp~CG~~F~   25 (26)
T PF10571_consen   16 FCPHCGYDFE   25 (26)
T ss_pred             cCCCCCCCCc
Confidence            4666666553

Several members are annotated as putative helicases.

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=89.74  E-value=0.3  Score=36.31  Aligned_cols=35  Identities=14%  Similarity=0.431  Sum_probs=24.6

Q ss_pred             CCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCC
Q psy4796         217 GDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAA  260 (274)
Q Consensus       217 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~  260 (274)
                      ....|.|+.|+..|+...++.         ..|.||.||.....
T Consensus       114 ~~~~Y~Cp~C~~rytf~eA~~---------~~F~Cp~Cg~~L~~  148 (178)
T PRK06266        114 NNMFFFCPNCHIRFTFDEAME---------YGFRCPQCGEMLEE  148 (178)
T ss_pred             CCCEEECCCCCcEEeHHHHhh---------cCCcCCCCCCCCee
Confidence            345688888888888777652         35888888875543

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=89.52  E-value=0.77  Score=31.10  Aligned_cols=25  Identities=20%  Similarity=0.612  Sum_probs=22.3

Q ss_pred             ccc----CcCccccCCchhHHHHHhhhCC
Q psy4796         221 FAC----SYCDYTCNQSSNLQTHLRIHKT  245 (274)
Q Consensus       221 ~~C----~~C~~~f~~~~~l~~H~~~h~~  245 (274)
                      |.|    ..|+..+.+...+.+|++.+++
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            889    9999999999999999988664

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=89.43  E-value=0.26  Score=26.10  Aligned_cols=11  Identities=36%  Similarity=0.761  Sum_probs=5.8

Q ss_pred             ceecCCCCccC
Q psy4796         248 EYACGKCAYRT  258 (274)
Q Consensus       248 ~~~C~~C~~~f  258 (274)
                      ...|+.|+..|
T Consensus        25 ~v~C~~C~~~~   35 (38)
T TIGR02098        25 KVRCGKCGHVW   35 (38)
T ss_pred             EEECCCCCCEE
Confidence            35555555544

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=89.03  E-value=0.15  Score=38.88  Aligned_cols=28  Identities=18%  Similarity=0.261  Sum_probs=17.0

Q ss_pred             CceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         247 REYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       247 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      ..|.|++|+|.|.-..-+.+||...|+|
T Consensus        76 ~K~~C~lc~KlFkg~eFV~KHI~nKH~e  103 (214)
T PF04959_consen   76 DKWRCPLCGKLFKGPEFVRKHIFNKHPE  103 (214)
T ss_dssp             EEEEE-SSS-EESSHHHHHHHHHHH-HH
T ss_pred             CEECCCCCCcccCChHHHHHHHhhcCHH
Confidence            3477777777777777777777766653

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=88.86  E-value=0.2  Score=38.76  Aligned_cols=97  Identities=20%  Similarity=0.379  Sum_probs=54.3

Q ss_pred             hhcCCCCccCCCCCCccccHHHHHHHHHHHHHHHHHHhHhhcCCCccCCCCCCCCCCChhhhhhhccCCCCCcccCCCcc
Q psy4796         114 THTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKF  193 (274)
Q Consensus       114 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~  193 (274)
                      +.++.+.|+|..|.. |.-...--.|+++        -.......|+|..|++.                       ..|
T Consensus       136 w~hGGrif~CsfC~~-flCEDDQFEHQAs--------CQvLe~E~~KC~SCNrl-----------------------Gq~  183 (314)
T PF06524_consen  136 WDHGGRIFKCSFCDN-FLCEDDQFEHQAS--------CQVLESETFKCQSCNRL-----------------------GQY  183 (314)
T ss_pred             ccCCCeEEEeecCCC-eeeccchhhhhhh--------hhhhhcccccccccccc-----------------------cch
Confidence            456778899999965 4334444455544        22355667888777642                       115


Q ss_pred             ccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhh
Q psy4796         194 VCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH  243 (274)
Q Consensus       194 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  243 (274)
                      .|-.|...|-.....+.=.+ -...+++.|+.|+.....-..|..-.+.|
T Consensus       184 sCLRCK~cfCddHvrrKg~k-y~k~k~~PCPKCg~et~eTkdLSmStR~h  232 (314)
T PF06524_consen  184 SCLRCKICFCDDHVRRKGFK-YEKGKPIPCPKCGYETQETKDLSMSTRSH  232 (314)
T ss_pred             hhhheeeeehhhhhhhcccc-cccCCCCCCCCCCCcccccccceeeeecc
Confidence            55555555553322111111 12347788888887766655555544444

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=88.84  E-value=0.14  Score=39.44  Aligned_cols=24  Identities=21%  Similarity=0.170  Sum_probs=17.1

Q ss_pred             CCCeeeccccCCcchhhHHHHHhhh
Q psy4796          26 PADVTCLHCSLTTPCVMKDMIRHGR   50 (274)
Q Consensus        26 ~~~~~C~~C~~~f~~~~~~l~~H~~   50 (274)
                      ++.+.||+|+..| .+..-.....+
T Consensus         3 ~k~~~CPvC~~~F-~~~~vrs~~~r   26 (214)
T PF09986_consen    3 DKKITCPVCGKEF-KTKKVRSGKIR   26 (214)
T ss_pred             CCceECCCCCCee-eeeEEEcCCce
Confidence            4568899999998 66665555555

>smart00531 TFIIE Transcription initiation factor IIE

Probab=88.68  E-value=0.47  Score=34.17  Aligned_cols=38  Identities=16%  Similarity=0.445  Sum_probs=24.4

Q ss_pred             CCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccC
Q psy4796         217 GDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRT  258 (274)
Q Consensus       217 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f  258 (274)
                      ....|.|+.|+..|.....+.- .  . ....|.||.||...
T Consensus        96 ~~~~Y~Cp~C~~~y~~~ea~~~-~--d-~~~~f~Cp~Cg~~l  133 (147)
T smart00531       96 NNAYYKCPNCQSKYTFLEANQL-L--D-MDGTFTCPRCGEEL  133 (147)
T ss_pred             CCcEEECcCCCCEeeHHHHHHh-c--C-CCCcEECCCCCCEE
Confidence            4456888888888886544322 0  1 23448888888765

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=88.45  E-value=0.72  Score=26.98  Aligned_cols=11  Identities=36%  Similarity=0.757  Sum_probs=7.9

Q ss_pred             CccccCCCCcc
Q psy4796         191 KKFVCFACPYA  201 (274)
Q Consensus       191 ~~~~C~~C~~~  201 (274)
                      ..|.|+.||..
T Consensus        24 ~~F~CPnCG~~   34 (59)
T PRK14890         24 VKFLCPNCGEV   34 (59)
T ss_pred             CEeeCCCCCCe
Confidence            34788888866

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=88.14  E-value=0.42  Score=25.21  Aligned_cols=11  Identities=18%  Similarity=0.437  Sum_probs=5.1

Q ss_pred             ccCCCCccccC
Q psy4796         194 VCFACPYATQY  204 (274)
Q Consensus       194 ~C~~C~~~f~~  204 (274)
                      .|+.|+..|.-
T Consensus         4 ~CP~C~~~f~v   14 (37)
T PF13719_consen    4 TCPNCQTRFRV   14 (37)
T ss_pred             ECCCCCceEEc
Confidence            34445444443

>KOG2186|consensus

Probab=87.73  E-value=0.32  Score=37.53  Aligned_cols=45  Identities=22%  Similarity=0.559  Sum_probs=22.6

Q ss_pred             eecccccccccChHHHHHHHhhcCCCCcccCCCCCcccCChhHHHHHH
Q psy4796          65 FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHL  112 (274)
Q Consensus        65 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  112 (274)
                      |.|.+||.... +..+.+|+..-++ ..|.|-.|+..|.. ..+..|.
T Consensus         4 FtCnvCgEsvK-Kp~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~   48 (276)
T KOG2186|consen    4 FTCNVCGESVK-KPQVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHT   48 (276)
T ss_pred             Eehhhhhhhcc-ccchHHHHHhccC-CeeEEeeccccccc-chhhhhh
Confidence            45555555443 3334445555444 34555555555555 4445553

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.55  E-value=0.43  Score=26.35  Aligned_cols=27  Identities=30%  Similarity=0.500  Sum_probs=14.5

Q ss_pred             CCceecCCCCccCCC----hhHHHHHHhhhc
Q psy4796         246 EREYACGKCAYRTAA----LPDLKLHLKNMH  272 (274)
Q Consensus       246 ~~~~~C~~C~~~f~~----~~~l~~H~~~~H  272 (274)
                      .....|.+|++.+..    .+.|.+|++..|
T Consensus        14 ~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~h   44 (45)
T PF02892_consen   14 KKKAKCKYCGKVIKYSSGGTSNLKRHLKKKH   44 (45)
T ss_dssp             SS-EEETTTTEE-----SSTHHHHHHHHHTT
T ss_pred             cCeEEeCCCCeEEeeCCCcHHHHHHhhhhhC
Confidence            344567777776654    356777775554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=87.45  E-value=0.51  Score=24.75  Aligned_cols=6  Identities=50%  Similarity=1.254  Sum_probs=2.3

Q ss_pred             ccCcCc
Q psy4796         222 ACSYCD  227 (274)
Q Consensus       222 ~C~~C~  227 (274)
                      +|+.|+
T Consensus        27 ~C~~C~   32 (36)
T PF13717_consen   27 RCSKCG   32 (36)
T ss_pred             ECCCCC
Confidence            333333

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=87.43  E-value=0.46  Score=26.20  Aligned_cols=11  Identities=18%  Similarity=0.751  Sum_probs=5.2

Q ss_pred             cccCCCCcccc
Q psy4796         193 FVCFACPYATQ  203 (274)
Q Consensus       193 ~~C~~C~~~f~  203 (274)
                      |.|..||..|.
T Consensus         3 Y~C~~Cg~~~~   13 (44)
T smart00659        3 YICGECGRENE   13 (44)
T ss_pred             EECCCCCCEee
Confidence            44455554444

present in RNA polymerase I, II and III

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=87.38  E-value=0.36  Score=35.18  Aligned_cols=24  Identities=29%  Similarity=0.707  Sum_probs=16.9

Q ss_pred             CcccCcCccccCCchhHHHHHhhhCCCCceecCCCCc
Q psy4796         220 PFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAY  256 (274)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~  256 (274)
                      .|.|++||..+             .++.|-+||+||.
T Consensus       134 ~~vC~vCGy~~-------------~ge~P~~CPiCga  157 (166)
T COG1592         134 VWVCPVCGYTH-------------EGEAPEVCPICGA  157 (166)
T ss_pred             EEEcCCCCCcc-------------cCCCCCcCCCCCC
Confidence            58888887653             3456777888874

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=87.11  E-value=0.34  Score=32.64  Aligned_cols=30  Identities=17%  Similarity=0.372  Sum_probs=19.4

Q ss_pred             cccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCCh
Q psy4796         221 FACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAAL  261 (274)
Q Consensus       221 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  261 (274)
                      ..|+.||..|-...           ..|.+||.||..|.-.
T Consensus        10 R~Cp~CG~kFYDLn-----------k~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDLN-----------KDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccCC-----------CCCccCCCCCCccCcc
Confidence            46777777776532           2667777777776544

The function of members of this family is unknown.

>KOG2186|consensus

Probab=86.92  E-value=0.34  Score=37.37  Aligned_cols=46  Identities=20%  Similarity=0.476  Sum_probs=29.0

Q ss_pred             cccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHh
Q psy4796         193 FVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLR  241 (274)
Q Consensus       193 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  241 (274)
                      |.|..||...... .+..|+...++ .-|.|.-|++.|.. .++..|..
T Consensus         4 FtCnvCgEsvKKp-~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen    4 FTCNVCGESVKKP-QVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             Eehhhhhhhcccc-chHHHHHhccC-CeeEEeeccccccc-chhhhhhh
Confidence            6677777665533 45557766665 44777777777766 55666643

>KOG4173|consensus

Probab=86.62  E-value=0.31  Score=36.34  Aligned_cols=75  Identities=24%  Similarity=0.506  Sum_probs=38.5

Q ss_pred             eeccc--ccccccChHHHHHHHhhcCCCCcccCCCCCcccCChhHHHHHHhh-h---------cCCCCccC--CCCCCcc
Q psy4796          65 FLCLF--CSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLT-H---------TGEKPFAC--HLCPYRA  130 (274)
Q Consensus        65 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h---------~~~~~~~C--~~C~~~f  130 (274)
                      +.|++  |.+.|.+.+....|...-++   -.|..|.+.|.+...|..|+.. |         -+...|.|  ..|+..|
T Consensus        80 ~~cqvagc~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KF  156 (253)
T KOG4173|consen   80 FACQVAGCCQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKF  156 (253)
T ss_pred             ccccccchHHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhh
Confidence            45555  55556555555555432222   2466666666666666666432 2         12233555  4455566


Q ss_pred             ccHHHHHHHHHH
Q psy4796         131 SRKYYITAHLNS  142 (274)
Q Consensus       131 ~~~~~l~~H~~~  142 (274)
                      .+......|+-.
T Consensus       157 kT~r~RkdH~I~  168 (253)
T KOG4173|consen  157 KTSRDRKDHMIR  168 (253)
T ss_pred             hhhhhhhhHHHH
Confidence            555555555443

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=85.39  E-value=0.76  Score=22.06  Aligned_cols=19  Identities=21%  Similarity=0.359  Sum_probs=14.6

Q ss_pred             ecCCCCccCCChhHHHHHHh
Q psy4796         250 ACGKCAYRTAALPDLKLHLK  269 (274)
Q Consensus       250 ~C~~C~~~f~~~~~l~~H~~  269 (274)
                      .||+|++.+ ....+.+|+.
T Consensus         3 ~CPiC~~~v-~~~~in~HLD   21 (26)
T smart00734        3 QCPVCFREV-PENLINSHLD   21 (26)
T ss_pred             cCCCCcCcc-cHHHHHHHHH
Confidence            588888887 5677888875

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=85.07  E-value=0.6  Score=32.08  Aligned_cols=30  Identities=10%  Similarity=0.077  Sum_probs=16.5

Q ss_pred             cccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCc
Q psy4796         193 FVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQS  233 (274)
Q Consensus       193 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  233 (274)
                      ..|+.||+.|...           ++.|..|+.||..|...
T Consensus        10 r~Cp~cg~kFYDL-----------nk~p~vcP~cg~~~~~~   39 (129)
T TIGR02300        10 RICPNTGSKFYDL-----------NRRPAVSPYTGEQFPPE   39 (129)
T ss_pred             ccCCCcCcccccc-----------CCCCccCCCcCCccCcc
Confidence            4566666666543           23455666666665443

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A

Probab=85.03  E-value=0.78  Score=27.08  Aligned_cols=47  Identities=28%  Similarity=0.550  Sum_probs=25.7

Q ss_pred             CCcccCc--CccccCCchhHHHHHhhhCCCCceecCC----CCccCCChhHHHHH
Q psy4796         219 KPFACSY--CDYTCNQSSNLQTHLRIHKTEREYACGK----CAYRTAALPDLKLH  267 (274)
Q Consensus       219 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H  267 (274)
                      .+..|+.  |...+ .+..|..|+..--..++..|+.    |+..+. ...|.+|
T Consensus         8 ~~v~C~~~cc~~~i-~r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~-~~~l~~H   60 (60)
T PF02176_consen    8 RPVPCPNGCCNEMI-PRKELDDHLENECPKRPVPCPYSPYGCKERVP-REDLEEH   60 (60)
T ss_dssp             SEEE-TT--S-BEE-ECCCHHHHHHTTSTTSEEE-SS----S--EEE-HHHHHHC
T ss_pred             CEeeCCCCCcccce-eHHHHHHHHHccCCCCcEECCCCCCCCCCccc-hhHHhCC
Confidence            4566766  43333 4557788888777777778888    777653 3334433

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=84.87  E-value=0.28  Score=28.12  Aligned_cols=11  Identities=18%  Similarity=0.745  Sum_probs=5.7

Q ss_pred             cccCcCccccC
Q psy4796         221 FACSYCDYTCN  231 (274)
Q Consensus       221 ~~C~~C~~~f~  231 (274)
                      |.|..||..|.
T Consensus         6 y~C~~Cg~~fe   16 (52)
T TIGR02605         6 YRCTACGHRFE   16 (52)
T ss_pred             EEeCCCCCEeE
Confidence            45555555554

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=83.73  E-value=0.43  Score=26.58  Aligned_cols=11  Identities=18%  Similarity=0.791  Sum_probs=5.8

Q ss_pred             cccCcCccccC
Q psy4796         221 FACSYCDYTCN  231 (274)
Q Consensus       221 ~~C~~C~~~f~  231 (274)
                      |.|+.||..|.
T Consensus         4 y~C~~CG~~~~   14 (46)
T PRK00398          4 YKCARCGREVE   14 (46)
T ss_pred             EECCCCCCEEE
Confidence            55555555444

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=83.22  E-value=0.86  Score=23.15  Aligned_cols=8  Identities=25%  Similarity=0.791  Sum_probs=3.2

Q ss_pred             cccCcCcc
Q psy4796         221 FACSYCDY  228 (274)
Q Consensus       221 ~~C~~C~~  228 (274)
                      .+|+.||.
T Consensus        18 irC~~CG~   25 (32)
T PF03604_consen   18 IRCPECGH   25 (32)
T ss_dssp             SSBSSSS-
T ss_pred             EECCcCCC
Confidence            34444443

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>smart00614 ZnF_BED BED zinc finger

Probab=82.29  E-value=1.1  Score=25.37  Aligned_cols=24  Identities=25%  Similarity=0.558  Sum_probs=13.3

Q ss_pred             eecCCCCccCCCh-----hHHHHHHhhhc
Q psy4796         249 YACGKCAYRTAAL-----PDLKLHLKNMH  272 (274)
Q Consensus       249 ~~C~~C~~~f~~~-----~~l~~H~~~~H  272 (274)
                      -.|..|++.+...     +.|.+|++..|
T Consensus        19 a~C~~C~~~l~~~~~~gTs~L~rHl~~~h   47 (50)
T smart00614       19 AKCKYCGKKLSRSSKGGTSNLRRHLRRKH   47 (50)
T ss_pred             EEecCCCCEeeeCCCCCcHHHHHHHHhHC
Confidence            3456666655443     46777766433

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=81.97  E-value=0.54  Score=25.63  Aligned_cols=12  Identities=17%  Similarity=0.636  Sum_probs=6.0

Q ss_pred             ccCCCCCCCCCC
Q psy4796         159 RKCVHCSEPISS  170 (274)
Q Consensus       159 ~~c~~c~~~~~~  170 (274)
                      |.|..||..|..
T Consensus         6 y~C~~Cg~~fe~   17 (42)
T PF09723_consen    6 YRCEECGHEFEV   17 (42)
T ss_pred             EEeCCCCCEEEE
Confidence            445555554443

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=80.91  E-value=0.25  Score=38.01  Aligned_cols=11  Identities=27%  Similarity=0.933  Sum_probs=5.6

Q ss_pred             cccCcCccccC
Q psy4796         221 FACSYCDYTCN  231 (274)
Q Consensus       221 ~~C~~C~~~f~  231 (274)
                      ..|+.||..|.
T Consensus        49 ~vCP~CgyA~~   59 (214)
T PF09986_consen   49 WVCPHCGYAAF   59 (214)
T ss_pred             EECCCCCCccc
Confidence            44555555444

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=80.70  E-value=1.9  Score=31.46  Aligned_cols=34  Identities=21%  Similarity=0.328  Sum_probs=24.0

Q ss_pred             CCCCcccCCCCCcccCChhHHHHHHhhhcCCCCccCCCCCCcc
Q psy4796          88 LGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRA  130 (274)
Q Consensus        88 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f  130 (274)
                      .+..-|.|+.|+..|+.-..+.         ..|.||.||...
T Consensus       105 ~~~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~L  138 (158)
T TIGR00373       105 TNNMFFICPNMCVRFTFNEAME---------LNFTCPRCGAML  138 (158)
T ss_pred             cCCCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCEe
Confidence            4455678888888877777664         258888888755

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=80.58  E-value=0.88  Score=31.89  Aligned_cols=22  Identities=32%  Similarity=0.544  Sum_probs=9.0

Q ss_pred             eecCCCCccCCChhHHHHHHhhhcC
Q psy4796         249 YACGKCAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       249 ~~C~~C~~~f~~~~~l~~H~~~~H~  273 (274)
                      ..|-+||+.|..   |.+|++.|||
T Consensus        73 i~clecGk~~k~---LkrHL~~~~g   94 (132)
T PF05443_consen   73 IICLECGKKFKT---LKRHLRTHHG   94 (132)
T ss_dssp             EE-TBT--EESB---HHHHHHHTT-
T ss_pred             eEEccCCcccch---HHHHHHHccC
Confidence            455555555532   3455555554

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	274
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		4e-17
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		1e-09
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		3e-07
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		3e-09
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		1e-07
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		1e-06
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		2e-07
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		2e-06
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		8e-07
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		9e-07
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		1e-06
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		1e-06
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		1e-06
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		1e-06
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		7e-06
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		1e-06
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		1e-06
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		2e-06
2lce_A	74	Chemical Shift Assignment Of Hr4436b From Homo Sapi		7e-06
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		1e-05
4gzn_C	60	Mouse Zfp57 Zinc Fingers In Complex With Methylated		3e-05
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		4e-05
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		4e-04
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		5e-05
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		5e-05
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		3e-04
1tf3_A	92	Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures		5e-05
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		6e-05
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		6e-05
2rpc_A	155	Solution Structure Of The Tandem Zf-C2h2 Domains Fr		7e-05
2rpc_A	155	Solution Structure Of The Tandem Zf-C2h2 Domains Fr		2e-04
1f2i_G	73	Cocrystal Structure Of Selected Zinc Finger Dimer B		1e-04
3uk3_C	57	Crystal Structure Of Znf217 Bound To Dna Length = 5		1e-04
2gli_A	155	Five-Finger GliDNA COMPLEX Length = 155		1e-04
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		1e-04
1llm_C	88	Crystal Structure Of A Zif23-Gcn4 Chimera Bound To		3e-04
1tf6_A	190	Co-crystal Structure Of Xenopus Tfiiia Zinc Finger		5e-04
2ena_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		5e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 88/226 (38%), Gaps = 51/226 (22%)
Query: 51  LCEF--NSVVTSAKLQ-----FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFT 103
           + EF  +S V  A L+     + C  C    +    +  H  +H G KPYKCP C   F+
Sbjct: 1   ISEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFS 60
Query: 104 QKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITXXXXXXXXXXXXXXXXXXXPRRKCVH 163
            K  L RH  THTGEKP+                                      KC  
Sbjct: 61  DKKDLTRHQRTHTGEKPY--------------------------------------KCPE 82
Query: 164 CSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFAC 223
           C +  S   +      L     T T +K + C  C  +     +++ H  THTG+KP+ C
Sbjct: 83  CGKSFSQRAN------LRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKC 136
Query: 224 SYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
             C  + ++  NL TH R H  E+ Y C +C    +    L +H +
Sbjct: 137 PECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 39/73 (53%)
Query: 65  FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
           + C  C    +    ++ H  +H G KPYKCP C   F+Q   LQ+H  THTGEKP+ C 
Sbjct: 5   YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 125 LCPYRASRKYYIT 137
            C    SR  +++
Sbjct: 65  ECGKSFSRSDHLS 77

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 190 KKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREY 249
           +K + C  C  +   +  ++ H  THTG+KP+ C  C  + +QSS+LQ H R H  E+ Y
Sbjct: 2   EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 250 ACGKCAYRTAALPDLKLHLK 269
            C +C    +    L  H +
Sbjct: 62  KCPECGKSFSRSDHLSRHQR 81

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 37/63 (58%)
Query: 208 IKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLH 267
           +KTH+  HTG KP+ C  CDY    SS+L  HLRIH  ER + C  C Y +     L +H
Sbjct: 24  LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH 83
Query: 268 LKN 270
           L++
Sbjct: 84  LRS 86

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 70  CSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
           C    + +  +  H+  H G KP++C  C   F+Q+  L  H+ THTGEKPFAC +C
Sbjct: 12  CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDIC 68

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 196 FACPYAT-----QYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
           +ACP  +          + TH+  HTG KPF C  C    +Q ++L  H+R H  E+ +A
Sbjct: 5   YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 251 CGKCAYRTAALPDLKLHLKNMHL 273
           C  C  + A L     H K +HL
Sbjct: 65  CDICGRKFATLHTRTRHTK-IHL 86

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 70  CSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
           C    + +  +  H+  H G KP++C  C   F+Q   L +H+ THTGEKPFAC +C
Sbjct: 12  CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDIC 68

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 196 FACPYAT-----QYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
           +ACP  +          + TH+  HTG KPF C  C    +Q + L  H+R H  E+ +A
Sbjct: 5   YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 251 CGKCAYRTAALPDLKLHLKNMHL 273
           C  C  + A L     H K +HL
Sbjct: 65  CDICGRKFATLHTRDRHTK-IHL 86

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 196 FACPYAT-----QYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
           +ACP  +       +  +  H+  HTG KPF C  C    ++S +L TH+R H  E+ +A
Sbjct: 5   YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 251 CGKCAYRTAALPDLKLHLKNMHL 273
           C  C  + A   + K H K +HL
Sbjct: 65  CDICGRKFARSDERKRHTK-IHL 86

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 194 VCFACPYATQYACYIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYAC 251
           VC  C  A   +  +K H + HTG+KPF C++  C    +   NL+TH+RIH  +R Y C
Sbjct: 36  VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 95
Query: 252 --GKCAYRTAALPDLKLHL 268
               C  + A   +LK H+
Sbjct: 96  PFDGCNKKFAQSTNLKSHI 114

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 196 FACPYAT-----QYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
           +ACP  +       +  +  H+  HTG KPF C  C    ++S +L TH+R H  E+ +A
Sbjct: 5   YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 251 CGKCAYRTAALPDLKLHLKNMHL 273
           C  C  + A   + K H K +HL
Sbjct: 65  CDICGRKFARSDERKRHTK-IHL 86

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 196 FACPYAT-----QYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
           +ACP  +       +  +  H+  HTG KPF C  C    ++S +L TH+R H  E+ +A
Sbjct: 5   YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 251 CGKCAYRTAALPDLKLHLKNMHL 273
           C  C  + A   + K H K +HL
Sbjct: 65  CDICGRKFARSDERKRHTK-IHL 86

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 196 FACPYAT-----QYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
           +ACP  +       +  +  H+  HTG KPF C  C    ++S +L TH+R H  E+ +A
Sbjct: 5   YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 251 CGKCAYRTAALPDLKLHLKNMHL 273
           C  C  + A   + K H K +HL
Sbjct: 65  CDICGRKFARSDERKRHTK-IHL 86

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 70  CSYVATARIAIKNHLSSHLGWKPYKC--PHCDHCFTQKVVLQRHLLTHTGEKPFACHLCP 127
           C+ V T    +K HL +H G KPYKC    CD  F +   L RH   HTG KPF C +C 
Sbjct: 23  CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 128 YRASR 132
              SR
Sbjct: 83  RSFSR 87

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 205 ACYIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALP 262
           + ++K H+ THTG+KP+ C++  CD+   +S  L  H R H   + + CG C    +   
Sbjct: 30  SSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSD 89
Query: 263 DLKLHLK 269
            L LH+K
Sbjct: 90  HLALHMK 96

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 196 FACPYAT-----QYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
           +ACP  +       +  +  H+  HTG KPF C  C    ++S +L TH+R H  E+ +A
Sbjct: 4   YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 251 CGKCAYRTAALPDLKLHLKNMHL 273
           C  C  + A   + K H K +HL
Sbjct: 64  CDICGRKFARSDERKRHTK-IHL 85

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 196 FACPYAT-----QYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
           +ACP  +       +  +  H+  HTG KPF C  C    ++S +L TH+R H  E+ +A
Sbjct: 5   YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 251 CGKCAYRTAALPDLKLHLKNMHL 273
           C  C  + A   + K H K +HL
Sbjct: 65  CDICGRKFARSDERKRHTK-IHL 86

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 196 FACPYAT-----QYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
           +ACP  +       +  +  H+  HTG KPF C  C    ++S +L TH+R H  E+ +A
Sbjct: 5   YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 251 CGKCAYRTAALPDLKLHLKNMHL 273
           C  C  + A   + K H K +HL
Sbjct: 65  CDICGRKFARSDERKRHTK-IHL 86

>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens, Northeast Structural Genomics Consortium Length = 74

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 191 KKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
           K + C  C  + +Y   + +H   HTG+KP+ C+ C    N+ +NL+TH RIH  E+
Sbjct: 16  KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 55/152 (36%), Gaps = 41/152 (26%)
Query: 89  GWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITXXXXXXXXXXX 148
           G    +CP C   F  K  L+ H   HTGEKPF C  C     RK  +            
Sbjct: 4   GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEA------- 56
Query: 149 XXXXXXXXPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYI 208
                     R C++ SE +                        F C  C    +    +
Sbjct: 57  ----------RNCMNRSEQV------------------------FTCSVCQETFRRRMEL 82
Query: 209 KTHVMTHTGDKPFACSYCDYTCNQSSNLQTHL 240
           + H+++HTG+ P+ CS C     Q  +LQ+H+
Sbjct: 83  RLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114

>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna Length = 60

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 65  FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGE 118
           F C FC         +  H  +HLG++P  CP C  CF  +  + RHL  H  +
Sbjct: 5   FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 53  EFNSVVTSAKLQFLCLF--CSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQR 110
           + +S   + +  + C F  C    +    +K H   H G KP++C  C   F++   L+ 
Sbjct: 25  QMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKT 84
Query: 111 HLLTHTGEKPFAC 123
           H  THTGEKPF+C
Sbjct: 85  HTRTHTGEKPFSC 97

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 208 IKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG--KCAYRTAALPDLK 265
           +K H   HTG KPF C  C    ++S +L+TH R H  E+ ++C    C  + A   +L 
Sbjct: 54  LKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELV 113
Query: 266 LHLKNMH 272
            H  NMH
Sbjct: 114 RH-HNMH 119

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 30/60 (50%)
Query: 70  CSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYR 129
           C    T +     H+S HLG +PY C  C   F  K  L  H+  HTG KP+ C++C  R
Sbjct: 15  CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 29/62 (46%)
Query: 65  FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
           F C  C         +  HL  H   +PY C +C   F QK  +++H   HTGEKP  C 
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 125 LC 126
           +C
Sbjct: 62  VC 63

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 193 FVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG 252
           F C  C  + + +  + TH++ H+  +P+ C YC    +Q S+++ H  IH  E+ + C 
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 253 KCAYRTAALPDLKLH 267
            C    +   +L  H
Sbjct: 62  VCGKAFSQSSNLITH 76

>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures Length = 92

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 64  QFLCLF--CSYVATARIAIKNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEK 119
           +++C F  C         ++ HLS H G KP+ C    C+  FT    L RH LTHTGEK
Sbjct: 3   RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 62
Query: 120 PFAC 123
            F C
Sbjct: 63  NFTC 66

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 205 ACYIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALP 262
           + ++K H+ THTG+KP+ C +  C +   +S  L  H R H   R + C KC    +   
Sbjct: 21  SSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSD 80
Query: 263 DLKLHLKN 270
            L LH+K 
Sbjct: 81  HLALHMKR 88

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 205 ACYIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALP 262
           + ++K H+ THTG+KP+ C +  C +   +S  L  H R H   R + C KC    +   
Sbjct: 20  SSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSD 79
Query: 263 DLKLHLKN 270
            L LH+K 
Sbjct: 80  HLALHMKR 87

>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The Human Zinc Finger Protein Zic 3 Length = 155

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 76  ARIAIKNHLSSHLGWKPYKCP--HCDHCFTQKVVLQRHLLTHTGEKPFACHL 125
           A+  + NH+  H G KP+ CP   C   F +   L+ H  THTGEKPF C  
Sbjct: 74  AKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEF 125

>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The Human Zinc Finger Protein Zic 3 Length = 155

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 170 SDMSEIIEHCLVCPNATRTDKKKFVCF--ACP-----YATQYACYIKTHVMTHTGDKPFA 222
           S M E++ H +   +    ++   VC+   CP     +  +Y   +  H+  HTG+KPF 
Sbjct: 36  STMHELVTH-VTMEHVGGPEQNNHVCYWEECPREGKSFKAKYK--LVNHIRVHTGEKPFP 92
Query: 223 CSY--CDYTCNQSSNLQTHLRIHKTEREYAC--GKCAYRTAALPDLKLHL 268
           C +  C     +S NL+ H R H  E+ + C    C  R A   D K H+
Sbjct: 93  CPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142

>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To Dna Length = 73

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 90  WKPYKCP--HCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYIT 137
            +PY CP   CD  F++   L RH+  HTG+KPF C +C    SR  ++T
Sbjct: 17  MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66

>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna Length = 57

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 207 YIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
           Y+  H+ THTG+KP+ C +C+Y   Q ++L+ HL  H
Sbjct: 19  YLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55

>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX Length = 155

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 14/97 (14%)
Query: 164 CSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFAC-------PYATQYACYIKTHVMTHT 216
           CS+   S   +++ H  +       ++K+FVC          P+  QY   +  H+  HT
Sbjct: 9   CSQEFDS-QEQLVHH--INSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVV--HMRRHT 63
Query: 217 GDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYAC 251
           G+KP  C++  C  + ++  NL+THLR H  E+ Y C
Sbjct: 64  GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMC 100

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 32/68 (47%)
Query: 59  TSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGE 118
           +  K +F+C FC    T    +  H  +H   +PY C  C   F ++  L+ H   H+ E
Sbjct: 12  SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKE 71
Query: 119 KPFACHLC 126
           KPF C  C
Sbjct: 72  KPFKCQEC 79

>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna Length = 88

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 90  WKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASR 132
            KP++C  C   F++   L  H+ THTGEKPFAC +C  + +R
Sbjct: 1   MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 43

>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain Bound To The 5s Ribosomal Rna Gene Internal Control Region Length = 190

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 64  QFLCLF--CSYVATARIAIKNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEK 119
           +++C F  C         ++ HL  H G KP+ C    C+  FT    L RH LTHTGEK
Sbjct: 12  RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 120 PFAC 123
            F C
Sbjct: 72  NFTC 75

>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 311- 343) Of Human Zinc Finger Protein 224 Length = 46

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 85  SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
           SS    KP++C  CD  F Q+  L  H + HTGEKP
Sbjct: 5   SSGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	274
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	8e-19
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	5e-12
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-11
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-07
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	7e-18
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	3e-10
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	4e-08
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	1e-07
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	3e-07
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-14
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	4e-14
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	5e-09
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	3e-08
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	5e-04
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	4e-14
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	7e-14
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	4e-13
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	4e-12
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	4e-04
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	8e-13
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-10
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-09
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	3e-09
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	1e-08
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-04
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	9e-13
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	7e-09
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	3e-08
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	9e-08
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-06
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	4e-06
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-12
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	9e-09
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	4e-12
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-11
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-11
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	5e-11
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-09
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	5e-12
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	5e-11
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	8e-10
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	8e-08
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	9e-12
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	4e-10
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	5e-07
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	9e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	4e-05
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	1e-11
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	2e-08
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-11
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	8e-09
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-07
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	4e-06
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-11
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	8e-11
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	4e-09
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-08
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	3e-07
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	9e-05
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-11
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-09
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	1e-08
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	4e-06
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	7e-05
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-11
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-09
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	4e-11
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	1e-08
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-11
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-08
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	7e-11
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	4e-09
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	6e-07
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	2e-06
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	5e-04
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	8e-11
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	2e-09
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	3e-08
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	5e-08
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	1e-10
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	6e-08
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-10
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-08
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-10
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-08
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-10
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	3e-07
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-10
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	9e-09
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	2e-10
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	1e-06
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	3e-06
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	2e-05
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-10
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-08
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-10
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-08
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-10
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-08
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-10
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-08
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	3e-10
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	2e-08
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-10
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	9e-09
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-10
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-08
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-10
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	8e-09
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-10
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	7e-10
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-10
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-08
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	3e-10
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-09
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	1e-08
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	4e-07
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	3e-10
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	3e-08
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-10
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-07
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-10
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-08
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	4e-10
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-08
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	4e-10
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	1e-08
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	4e-10
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-08
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	4e-10
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-08
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-08
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	4e-08
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-04
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	4e-10
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	6e-08
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	4e-07
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	8e-07
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-06
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-06
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-04
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-10
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-08
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-10
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-08
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	4e-10
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	5e-10
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	4e-10
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	3e-09
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-10
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-08
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-10
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	7e-08
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-10
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-08
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	5e-10
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	1e-07
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-10
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-08
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-10
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-08
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	6e-10
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	7e-08
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-10
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-08
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	7e-10
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	1e-08
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-10
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-08
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-10
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-08
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	8e-10
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	2e-06
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	1e-05
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	1e-05
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-10
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	7e-08
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	8e-10
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	9e-09
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-10
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-08
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	9e-10
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-08
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	9e-10
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-08
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	1e-09
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-07
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-09
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-08
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	1e-09
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	4e-08
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-09
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-08
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-09
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-08
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-09
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-08
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-09
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-08
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	1e-09
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	3e-08
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	1e-09
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-08
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	1e-09
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	6e-06
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	1e-09
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	2e-08
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	1e-09
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-08
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-09
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-08
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	1e-09
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	6e-08
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-09
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-07
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-09
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-07
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-09
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	7e-08
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	2e-09
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	8e-09
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	1e-08
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	3e-07
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	4e-07
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	6e-06
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-09
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-08
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	2e-09
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	1e-07
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	2e-09
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	1e-08
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	6e-04
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	2e-09
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	1e-08
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	4e-07
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	1e-04
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-09
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-07
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	2e-09
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	9e-08
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-09
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-07
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-09
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-08
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-09
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	3e-09
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	4e-09
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	1e-08
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	1e-08
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	4e-08
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-09
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-08
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-09
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-07
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	3e-09
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-07
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	3e-09
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-08
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	5e-08
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-07
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	7e-07
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-06
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	3e-09
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	9e-08
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-09
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-07
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	4e-09
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	4e-08
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	4e-09
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	4e-08
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-09
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-07
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	4e-09
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	7e-09
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	2e-06
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	3e-05
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-09
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-08
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	5e-09
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-08
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-09
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-08
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-09
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-08
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-09
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-08
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	5e-09
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	1e-08
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-07
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	3e-06
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	6e-09
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	4e-08
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-09
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-07
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	1e-08
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	3e-08
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	1e-08
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	1e-08
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	1e-06
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	5e-06
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	6e-04
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	1e-08
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	3e-08
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	4e-08
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	5e-07
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	1e-08
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	2e-06
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-08
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-07
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-08
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-07
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	2e-08
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	1e-06
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	3e-08
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	3e-08
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	4e-07
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-06
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-06
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	3e-06
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	8e-06
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	4e-05
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	3e-04
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	3e-08
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	2e-06
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	5e-08
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	1e-04
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	6e-04
2epa_A	72	Krueppel-like factor 10; transforming growth facto	1e-07
2epa_A	72	Krueppel-like factor 10; transforming growth facto	5e-07
2epa_A	72	Krueppel-like factor 10; transforming growth facto	8e-05
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-07
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-06
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	1e-07
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	2e-07
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	3e-07
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	2e-06
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	5e-06
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	3e-05
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	8e-04
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	1e-04
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	3e-04
1ard_A	29	Yeast transcription factor ADR1; transcription reg	2e-04
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	2e-04
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	9e-04
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	3e-04
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	3e-04
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	3e-04
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	4e-04
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	9e-04
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	9e-04

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 81.0 bits (201), Expect = 8e-19
 Identities = 53/180 (29%), Positives = 75/180 (41%), Gaps = 32/180 (17%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNS 142
             +   G KPY CP C   F++   L  H  THTGEKP+ C  C    S K  +T H   
Sbjct: 12  QAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH--- 68

Query: 143 LLSALLLQHFLASQPRR--------KCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFV 194
                          +R        KC  C +   S  + +  H       T T +K + 
Sbjct: 69  ---------------QRTHTGEKPYKCPECGKSF-SQRANLRAH-----QRTHTGEKPYA 107

Query: 195 CFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
           C  C  +     +++ H  THTG+KP+ C  C  + ++  NL TH R H  E+ Y C +C
Sbjct: 108 CPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 62.1 bits (152), Expect = 5e-12
 Identities = 45/161 (27%), Positives = 61/161 (37%), Gaps = 44/161 (27%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNS 142
           H  +H G KPYKCP C   F+Q+  L+ H  THTGEK       PY              
Sbjct: 68  HQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEK-------PY-------------- 106

Query: 143 LLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYAT 202
                             C  C +  S   + +  H       T T +K + C  C  + 
Sbjct: 107 -----------------ACPECGKSFSQL-AHLRAH-----QRTHTGEKPYKCPECGKSF 143

Query: 203 QYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
                + TH  THTG+KP+ C  C  + ++   L  H R H
Sbjct: 144 SREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 61.3 bits (150), Expect = 1e-11
 Identities = 41/161 (25%), Positives = 62/161 (38%), Gaps = 32/161 (19%)

Query: 102 FTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRR-- 159
                          GEKP+AC  C    SR  ++  H                  +R  
Sbjct: 3   EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH------------------QRTH 44

Query: 160 ------KCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVM 213
                 KC  C +   SD  ++  H       T T +K + C  C  +      ++ H  
Sbjct: 45  TGEKPYKCPECGKSF-SDKKDLTRH-----QRTHTGEKPYKCPECGKSFSQRANLRAHQR 98

Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
           THTG+KP+AC  C  + +Q ++L+ H R H  E+ Y C +C
Sbjct: 99  THTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPEC 139

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 48.6 bits (117), Expect = 3e-07
 Identities = 18/38 (47%), Positives = 23/38 (60%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
           H  +H G KPYKCP C   F+++  L  H  THTG+K 
Sbjct: 152 HQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 76.4 bits (189), Expect = 7e-18
 Identities = 40/158 (25%), Positives = 59/158 (37%), Gaps = 42/158 (26%)

Query: 87  HLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSA 146
             G    +CP C   F  K  L+ H   HTGEKPF C  C     RK  +  H       
Sbjct: 2   SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHE------ 55

Query: 147 LLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYAC 206
                       R C++ SE                        + F C  C    +   
Sbjct: 56  -----------ARNCMNRSE------------------------QVFTCSVCQETFRRRM 80

Query: 207 YIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTH-LRIH 243
            ++ H+++HTG+ P+ CS C     Q  +LQ+H +++H
Sbjct: 81  ELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 55.6 bits (135), Expect = 3e-10
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVL---QRHLLTHTGEKPFACHLCPYRASRKYYITAH 139
           H   H G KP++CP C  C+ +K  L   +     +  E+ F C +C     R+  +  H
Sbjct: 26  HNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLH 85

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 49.8 bits (120), Expect = 4e-08
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
            +  ++ F CS C  T  +   L+ H+  H  E  Y C  C
Sbjct: 60  MNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSC 100

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 11/40 (27%), Positives = 15/40 (37%)

Query: 215 HTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
            +G     C  C         L+ H R H  E+ + C KC
Sbjct: 2   SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKC 41

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 47.5 bits (114), Expect = 3e-07
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 206 CYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLR---IHKTEREYACGKC 254
            Y+K H   HTG+KPF C  C     +  NL  H     ++++E+ + C  C
Sbjct: 21  YYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVC 72

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLL-THTGEK 119
           H+ SH G  PYKC  C   F QK  LQ H++  H+G  
Sbjct: 85  HMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 66.0 bits (162), Expect = 2e-14
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 209 KTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTERE--YACGKCAYRTAALPDLKL 266
            +   TH+G+KP+ C  C     QS  ++ H+    TE    + C  C    A   DL +
Sbjct: 4   GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGV 63

Query: 267 HLKNMH 272
           HL+  H
Sbjct: 64  HLRKQH 69

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 65.2 bits (160), Expect = 4e-14
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 81  KNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGE--KPFACHLCPYRASRKYYITA 138
            +   +H G KPY+C  C   FTQ   ++ H+L    E    F C  C    +RK  +  
Sbjct: 4   GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGV 63

Query: 139 HL 140
           HL
Sbjct: 64  HL 65

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 51.0 bits (123), Expect = 5e-09
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 81  KNHLSSHLG--WKPYKCPHCDHCFTQKVVLQRHLLT-HTGEKPFA 122
           K H+          + CPHCD    +K  L  HL   H+   P +
Sbjct: 32  KMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPSS 76

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 48.7 bits (117), Expect = 3e-08
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 209 KTHVMTHTG--DKPFACSYCDYTCNQSSNLQTHLR-IHKTEREYA 250
           K H++         F C +CD    + S+L  HLR  H      +
Sbjct: 32  KMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPSS 76

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 37.1 bits (87), Expect = 5e-04
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 108 LQRHLLTHTGEKPFACHLCPYRASRKYYITAH 139
                 TH+GEKP+ C++C  R ++   +  H
Sbjct: 3   SGSSGRTHSGEKPYECYICHARFTQSGTMKMH 34

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 64.8 bits (159), Expect = 4e-14
 Identities = 15/56 (26%), Positives = 26/56 (46%)

Query: 85  SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHL 140
           SS     P KC  C +  + K  L+ H   H  ++PF C+ C +   +   ++ H+
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM 57

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 64.1 bits (157), Expect = 7e-14
 Identities = 19/56 (33%), Positives = 31/56 (55%)

Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
           + +   P  CS C Y+C+  + L+ H RIH T+R + C  C++ T    +L  H+K
Sbjct: 3   SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 62.1 bits (152), Expect = 4e-13
 Identities = 16/59 (27%), Positives = 27/59 (45%)

Query: 185 ATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
           ++ +      C  C Y+      ++ H   H  D+PF C+YC +   Q SNL  H++  
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 59.0 bits (144), Expect = 4e-12
 Identities = 15/59 (25%), Positives = 26/59 (44%)

Query: 65  FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             C  CSY  +++ A++ H   H   +P+KC +C     Q   L +H+    G+     
Sbjct: 10  EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 17/111 (15%), Positives = 28/111 (25%), Gaps = 44/111 (39%)

Query: 114 THTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMS 173
           + +   P  C  C Y  S K  +  H                      +HC++       
Sbjct: 3   SGSSGHPEKCSECSYSCSSKAALRIHER--------------------IHCTD------- 35

Query: 174 EIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS 224
                            + F C  C + T+    +  H+    GD     S
Sbjct: 36  -----------------RPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 62.5 bits (153), Expect = 8e-13
 Identities = 41/159 (25%), Positives = 57/159 (35%), Gaps = 50/159 (31%)

Query: 91  KPYKC--PHCDHCFTQKVVLQRHLLTHTGEKPFACHL--CPYRASRKYYITAHLNSLLSA 146
           +P+ C  P C+  + +   LQ H   HTGEKP+ C    C  R SR   +  H       
Sbjct: 5   RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH------- 57

Query: 147 LLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYAC 206
                      +R                            T  K F C  C      + 
Sbjct: 58  -----------QR--------------------------RHTGVKPFQCKTCQRKFSRSD 80

Query: 207 YIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIH 243
           ++KTH  THTG+KPF+C +  C     +S  L  H  +H
Sbjct: 81  HLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 55.2 bits (134), Expect = 4e-10
 Identities = 20/44 (45%), Positives = 26/44 (59%)

Query: 81  KNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
           K H   H G KP++C  C   F++   L+ H  THTGEKPF+C 
Sbjct: 55  KRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCR 98

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 53.3 bits (129), Expect = 2e-09
 Identities = 18/43 (41%), Positives = 25/43 (58%)

Query: 209 KTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           K H   HTG KPF C  C    ++S +L+TH R H  E+ ++C
Sbjct: 55  KRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSC 97

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 52.9 bits (128), Expect = 3e-09
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 81  KNHLSSHLGWKPYKC--PHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITA 138
           + H   H G KPY+C    C+  F++   L+RH   HTG KPF C  C  + SR  ++  
Sbjct: 25  QMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKT 84

Query: 139 H 139
           H
Sbjct: 85  H 85

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 51.0 bits (123), Expect = 1e-08
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 209 KTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKL 266
           + H   HTG+KP+ C +  C+   ++S  L+ H R H   + + C  C  + +    LK 
Sbjct: 25  QMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKT 84

Query: 267 H 267
           H
Sbjct: 85  H 85

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 216 TGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYAC 251
           +  +PF C+Y  C+    + S+LQ H R H  E+ Y C
Sbjct: 2   SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQC 39

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 63.5 bits (155), Expect = 9e-13
 Identities = 30/174 (17%), Positives = 53/174 (30%), Gaps = 39/174 (22%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLN 141
           +               CD  F+    L  H+              P + +   Y      
Sbjct: 15  SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGG-------PEQNNHVCY------ 61

Query: 142 SLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFA--CP 199
                             +C    +   +   +++ H         T +K F C    C 
Sbjct: 62  ----------------WEECPREGKSFKA-KYKLVNH-----IRVHTGEKPFPCPFPGCG 99

Query: 200 YATQYACYIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYAC 251
                +  +K H  THTG+KPF C +  CD     SS+ + H+ +H +++    
Sbjct: 100 KIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 52.7 bits (127), Expect = 7e-09
 Identities = 27/156 (17%), Positives = 41/156 (26%), Gaps = 37/156 (23%)

Query: 98  CDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQP 157
                               +       C    S  + +  H+                 
Sbjct: 3   SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTM--------E------ 48

Query: 158 RRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTG 217
                H   P  ++     E C          K     F   Y       +  H+  HTG
Sbjct: 49  -----HVGGPEQNNHVCYWEECPRE------GK----SFKAKY------KLVNHIRVHTG 87

Query: 218 DKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYAC 251
           +KPF C +  C     +S NL+ H R H  E+ + C
Sbjct: 88  EKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 81  KNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEKPFAC 123
           K H  +H G KP+KC    CD  F      ++H+  HT +K    
Sbjct: 109 KIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 49.6 bits (119), Expect = 9e-08
 Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 81  KNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEKPFACH 124
            NH+  H G KP+ CP   C   F +   L+ H  THTGEKPF C 
Sbjct: 79  VNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 9/54 (16%)

Query: 80  IKNHLSSHLGWKPYK---------CPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
           +  H++      P +         CP     F  K  L  H+  HTGEKPF C 
Sbjct: 41  LVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCP 94

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 7/47 (14%), Positives = 11/47 (23%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAY 256
           +               CD T +    L TH+ +             Y
Sbjct: 15  SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 59.5 bits (145), Expect = 2e-12
 Identities = 18/41 (43%), Positives = 22/41 (53%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS +G K +KC  CD CF+Q   L+ H   H GEKP   
Sbjct: 3   SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 49.5 bits (119), Expect = 9e-09
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
           +   +  G+K + C  CD   +Q+S+L+ H  +H  E+      
Sbjct: 2   SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 60.1 bits (147), Expect = 4e-12
 Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 44/138 (31%)

Query: 86  SHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLS 145
           S     P+KC  C  CF++K  L+ H+  HTG KP+ C  C Y A+    +  H      
Sbjct: 2   SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH------ 55

Query: 146 ALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYA 205
                        R  +H                        +D++ F C  CPYA++ +
Sbjct: 56  ------------LR--IH------------------------SDERPFKCQICPYASRNS 77

Query: 206 CYIKTHVMTHTGDKPFAC 223
             +  H+ +HTGD   + 
Sbjct: 78  SQLTVHLRSHTGDSGPSS 95

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 58.6 bits (143), Expect = 1e-11
 Identities = 23/57 (40%), Positives = 31/57 (54%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAH 139
           H+  H G KPYKC  CD+       L +HL  H+ E+PF C +CPY +     +T H
Sbjct: 27  HMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH 83

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 58.6 bits (143), Expect = 2e-11
 Identities = 29/139 (20%), Positives = 41/139 (29%), Gaps = 44/139 (31%)

Query: 114 THTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMS 173
           +     P  C +C    SRK  +  H                       H          
Sbjct: 2   SSGSSGPHKCEVCGKCFSRKDKLKTH--------------------MRCH---------- 31

Query: 174 EIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQS 233
                         T  K + C  C YA   +  +  H+  H+ ++PF C  C Y    S
Sbjct: 32  --------------TGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNS 77

Query: 234 SNLQTHLRIHKTEREYACG 252
           S L  HLR H  +   + G
Sbjct: 78  SQLTVHLRSHTGDSGPSSG 96

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 57.0 bits (139), Expect = 5e-11
 Identities = 26/69 (37%), Positives = 32/69 (46%)

Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKT 245
           +        C  C         +KTH+  HTG KP+ C  CDY    SS+L  HLRIH  
Sbjct: 2   SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61

Query: 246 EREYACGKC 254
           ER + C  C
Sbjct: 62  ERPFKCQIC 70

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 53.2 bits (129), Expect = 1e-09
 Identities = 17/57 (29%), Positives = 25/57 (43%)

Query: 67  CLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           C  C Y A    ++  HL  H   +P+KC  C +       L  HL +HTG+   + 
Sbjct: 39  CKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 59.3 bits (144), Expect = 5e-12
 Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 3/61 (4%)

Query: 215 HTGDKPFACSYCDYTCNQSSNLQTHLRIH---KTEREYACGKCAYRTAALPDLKLHLKNM 271
            +G     C  C +TC Q ++L  H R H        + C  C  R      +  H    
Sbjct: 2   SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61

Query: 272 H 272
           H
Sbjct: 62  H 62

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 56.6 bits (137), Expect = 5e-11
 Identities = 14/57 (24%), Positives = 17/57 (29%), Gaps = 3/57 (5%)

Query: 87  HLGWKPYKCPHCDHCFTQKVVLQRHLLTHT---GEKPFACHLCPYRASRKYYITAHL 140
             G    +C  C     QK  L  H   H        F C  C  R  +   + AH 
Sbjct: 2   SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 53.2 bits (128), Expect = 8e-10
 Identities = 9/71 (12%), Positives = 19/71 (26%), Gaps = 3/71 (4%)

Query: 188 TDKKKFVCFACPYATQYACYIKTHVMTHT---GDKPFACSYCDYTCNQSSNLQTHLRIHK 244
           +      C  C +  +    +  H   H        F C +C     +  ++  H     
Sbjct: 3   SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62

Query: 245 TEREYACGKCA 255
                A  + +
Sbjct: 63  PALLLAPQESS 73

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 47.8 bits (114), Expect = 8e-08
 Identities = 9/66 (13%), Positives = 17/66 (25%), Gaps = 3/66 (4%)

Query: 65  FLCLFCSYVATARIAIKNHLSSH---LGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPF 121
             C  C +    + ++  H   H   +    + C  C   F +   +  H          
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67

Query: 122 ACHLCP 127
           A     
Sbjct: 68  APQESS 73

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 59.2 bits (144), Expect = 9e-12
 Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 81  KNHLSSHLGWKPYKC--PHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITA 138
           K HL +H G KPYKC    CD  F +   L RH   HTG KPF C +C    SR  ++  
Sbjct: 34  KAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLAL 93

Query: 139 HL 140
           H+
Sbjct: 94  HM 95

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 54.6 bits (132), Expect = 4e-10
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 209 KTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKL 266
           K H+ THTG+KP+ C++  CD+   +S  L  H R H   + + CG C    +    L L
Sbjct: 34  KAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLAL 93

Query: 267 HLK 269
           H+K
Sbjct: 94  HMK 96

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 46.1 bits (110), Expect = 5e-07
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 209 KTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
             H   HTG KPF C  C+ + ++S +L  H++ H
Sbjct: 64  TRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 42.6 bits (101), Expect = 9e-06
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 91  KPYKC--PHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           + + C  P C   +T+   L+ HL THTGEKP+ C
Sbjct: 14  RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKC 48

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 81  KNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHT 116
             H   H G KP++C  C+  F++   L  H+  H 
Sbjct: 64  TRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 57.5 bits (140), Expect = 1e-11
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G  PYKC  C+  F+ K+ L  H   HT EKP   
Sbjct: 3   SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 48.7 bits (117), Expect = 2e-08
 Identities = 10/44 (22%), Positives = 18/44 (40%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
           +   +  G  P+ CS C+ + +    L  H R+H  E+      
Sbjct: 2   SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS 45

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 57.6 bits (140), Expect = 2e-11
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 87  HLGWKPYKCPHCDHCFTQKVVLQRHLLT--HTGEKPFACHLCPYRASRKYYITAHL 140
             G   Y+C  C   +T      RH +T      K + C  C    +RK  +TAH+
Sbjct: 5   KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 50.2 bits (121), Expect = 8e-09
 Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 2/43 (4%)

Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRI--HKTEREYACGKC 254
           T  G+  + C  C       SN   H      +  + Y C  C
Sbjct: 4   TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFC 46

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 209 KTHVMT--HTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
             H +T      K + C +C     +  N+  H++I 
Sbjct: 27  CRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 42.5 bits (101), Expect = 4e-06
 Identities = 10/33 (30%), Positives = 13/33 (39%)

Query: 85  SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTG 117
           S     K Y CP C   FT+K  +  H+     
Sbjct: 33  SHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 58.2 bits (142), Expect = 2e-11
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 209 KTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHL 268
             H+  HTG KPF C  C    ++S +L TH+R H  E+ +AC  C  + A   + K H 
Sbjct: 23  TRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHT 82

Query: 269 K 269
           K
Sbjct: 83  K 83

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 56.3 bits (137), Expect = 8e-11
 Identities = 21/46 (45%), Positives = 28/46 (60%)

Query: 81  KNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
             H+  H G KP++C  C   F++   L  H+ THTGEKPFAC +C
Sbjct: 23  TRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 51.7 bits (125), Expect = 4e-09
 Identities = 16/40 (40%), Positives = 24/40 (60%)

Query: 209 KTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTERE 248
            TH+ THTG+KPFAC  C     +S   + H +IH  +++
Sbjct: 51  TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKD 90

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 49.8 bits (120), Expect = 2e-08
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 91  KPYKCP--HCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAH 139
           +PY CP   CD  F+Q   L RH+  HTG+KPF C +C    SR  ++T H
Sbjct: 3   RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 53

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 46.3 bits (111), Expect = 3e-07
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 81  KNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
             H+ +H G KP+ C  C   F +    +RH   H  +K
Sbjct: 51  TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 39.4 bits (93), Expect = 9e-05
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 219 KPFACSY--CDYTCNQSSNLQTHLRIHKTEREYACGKC 254
           +P+AC    CD   +QS +L  H+RIH  ++ + C  C
Sbjct: 3   RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRIC 40

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 57.9 bits (141), Expect = 2e-11
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 209 KTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
            TH+ THTG+KPFAC  C     +S   + H  I          K 
Sbjct: 20  TTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPILEDKV 64

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 52.5 bits (127), Expect = 2e-09
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 91  KPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
           KP++C  C   F++   L  H+ THTGEKPFAC +C
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 37

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 50.2 bits (121), Expect = 1e-08
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 1/59 (1%)

Query: 81  KNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAH 139
             H+ +H G KP+ C  C   F +    +RH        P          S+ Y++   
Sbjct: 20  TTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENE 77

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 43.3 bits (103), Expect = 4e-06
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 219 KPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
           KPF C  C    ++S +L TH+R H  E+ +AC  C
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 37

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 39.8 bits (94), Expect = 7e-05
 Identities = 4/32 (12%), Positives = 10/32 (31%), Gaps = 3/32 (9%)

Query: 91  KPYKCPHCDHCFTQKVVLQRHLL---THTGEK 119
            P      +   ++   L+  +       GE+
Sbjct: 57  LPILEDKVEELLSKNYHLENEVARLKKLVGER 88

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 56.4 bits (137), Expect = 3e-11
 Identities = 18/42 (42%), Positives = 21/42 (50%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G KPYKC  C   FT K  L+ H   HTGE+    
Sbjct: 2   SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.2 bits (121), Expect = 5e-09
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
           +   + TG+KP+ CS C  +    S L+ H + H  ER      
Sbjct: 2   SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSS 45

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 55.6 bits (135), Expect = 4e-11
 Identities = 17/40 (42%), Positives = 20/40 (50%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFA 122
              S  G KPYKC  C   F Q   L+ H+L HTG  P +
Sbjct: 2   SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 49.1 bits (118), Expect = 1e-08
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
              +  G+KP+ C  C     Q ++L+ H+ IH      +
Sbjct: 2   SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 55.6 bits (135), Expect = 6e-11
 Identities = 18/42 (42%), Positives = 22/42 (52%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G KPYKC  C   FT+K  L  H  +HTGE+    
Sbjct: 2   SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.0 bits (118), Expect = 1e-08
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+KP+ CS C     + S L  H + H  ER    
Sbjct: 2   SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 56.4 bits (137), Expect = 7e-11
 Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 81  KNHLSSHLGWKPYKC--PHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITA 138
           K HL +H G KPY C    C   F +   L RH   HTG +PF C  C    SR  ++  
Sbjct: 24  KAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLAL 83

Query: 139 H 139
           H
Sbjct: 84  H 84

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 51.8 bits (125), Expect = 4e-09
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 187 RTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHK 244
           RT         C      + ++K H+ THTG+KP+ C +  C +   +S  L  H R H 
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61

Query: 245 TEREYACGKC 254
             R + C KC
Sbjct: 62  GHRPFQCQKC 71

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 45.6 bits (109), Expect = 6e-07
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 87  HLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
                      C   +T+   L+ HL THTGEKP+ C
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHC 38

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 209 KTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
             H   HTG +PF C  CD   ++S +L  H++ H
Sbjct: 54  TRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 37.1 bits (87), Expect = 5e-04
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTH 115
           H   H G +P++C  CD  F++   L  H+  H
Sbjct: 56  HYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 55.9 bits (136), Expect = 8e-11
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 84  LSSHL--------GWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYY 135
           +  H           KPYKC  C   F  K  L  H   HTGEKP+ C++C  + +R   
Sbjct: 1   MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPAN 60

Query: 136 ITAH 139
           +  H
Sbjct: 61  LKTH 64

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 52.1 bits (126), Expect = 2e-09
 Identities = 14/48 (29%), Positives = 20/48 (41%)

Query: 207 YIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
           +   H      DKP+ C  C  +     NL +H  +H  E+ Y C  C
Sbjct: 4   HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNIC 51

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 48.6 bits (117), Expect = 3e-08
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPF 121
           H + H G KPY+C  C   F +   L+ H   H+GEKP+
Sbjct: 36  HKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 48.2 bits (116), Expect = 5e-08
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 188 TDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
              K + C  C  + +Y   + +H   HTG+KP+ C+ C    N+ +NL+TH RIH  E+
Sbjct: 13  HSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72

Query: 248 EY 249
            Y
Sbjct: 73  PY 74

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 54.5 bits (132), Expect = 1e-10
 Identities = 15/41 (36%), Positives = 16/41 (39%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KP KC  C   F  K  L  H  TH  +K    
Sbjct: 3   SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.2 bits (113), Expect = 6e-08
 Identities = 11/42 (26%), Positives = 17/42 (40%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+KP  C+ C       S L  H R H  ++    
Sbjct: 2   SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 54.5 bits (132), Expect = 1e-10
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G KPYKC  C   + +++ L  H   HTGEK    
Sbjct: 2   SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 3e-08
 Identities = 10/44 (22%), Positives = 19/44 (43%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
           +   + +G+KP+ C  C     +  +L  H R+H  E+      
Sbjct: 2   SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSS 45

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 54.5 bits (132), Expect = 2e-10
 Identities = 19/41 (46%), Positives = 21/41 (51%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS +G K YKC  C   F+Q   LQ H   HTGEKP   
Sbjct: 3   SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.1 bits (118), Expect = 1e-08
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   +  G+K + C  C    +QSS+LQTH R+H  E+    
Sbjct: 2   SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 54.1 bits (131), Expect = 2e-10
 Identities = 15/39 (38%), Positives = 18/39 (46%)

Query: 85  SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           S   G KP+ C  C+  F+ K  L  H  TH  EKP   
Sbjct: 3   SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 45.2 bits (108), Expect = 3e-07
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
             +G+KPF CS C+   +  S L  H + H  E+    
Sbjct: 4   GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 54.0 bits (131), Expect = 2e-10
 Identities = 16/42 (38%), Positives = 19/42 (45%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G  P+ C  C   FT K  L  H   HTGE+P   
Sbjct: 2   SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.4 bits (119), Expect = 9e-09
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+ PF CS C       +NL  H +IH  ER    
Sbjct: 2   SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 55.0 bits (133), Expect = 2e-10
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 4/63 (6%)

Query: 82  NHLSSHL--GWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYIT 137
           N+L +++    +PY CP   CD  F++   L RH+  HTG+KPF C +C    SR  ++T
Sbjct: 7   NNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66

Query: 138 AHL 140
            H+
Sbjct: 67  THI 69

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 214 THTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
                +P+AC    CD   ++S  L  H+RIH  ++ + C  C    +    L  H++
Sbjct: 13  VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 209 KTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
             H+  HTG KPF C  C    ++S +L TH+R H
Sbjct: 38  TRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 81  KNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHT 116
             H+  H G KP++C  C   F++   L  H+ THT
Sbjct: 38  TRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 54.1 bits (131), Expect = 2e-10
 Identities = 16/41 (39%), Positives = 19/41 (46%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KPY+C  C   F Q   L +H   HTGE+    
Sbjct: 3   SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 5e-08
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + +G KP+ C  C  T  Q  +L  H R+H  ER    
Sbjct: 2   SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.7 bits (130), Expect = 2e-10
 Identities = 18/42 (42%), Positives = 20/42 (47%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
             SS  G KP++C  C   FTQ   L  H   HTGEKP    
Sbjct: 3   SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 3e-08
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + +G+KPF C  C     Q+S+L +H R+H  E+    
Sbjct: 2   SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.6 bits (130), Expect = 2e-10
 Identities = 18/42 (42%), Positives = 21/42 (50%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G KP++C  C   F  K  L  H  THTGEKP   
Sbjct: 2   SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.6 bits (117), Expect = 2e-08
 Identities = 16/42 (38%), Positives = 20/42 (47%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+KPF CS C    N  SNL  H R H  E+    
Sbjct: 2   SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 53.7 bits (130), Expect = 2e-10
 Identities = 18/42 (42%), Positives = 21/42 (50%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G KPYKC  C   F  +  L  H + HTGEKP   
Sbjct: 2   SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 47.5 bits (114), Expect = 5e-08
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+KP+ C  C        +L TH  +H  E+    
Sbjct: 2   SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 53.8 bits (130), Expect = 3e-10
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 82  NHLSSHLGWKPYKC--PHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G KP+ C  P C   F++   L RH  +H+G KP   
Sbjct: 2   SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 48.5 bits (116), Expect = 2e-08
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 210 THVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+KPFAC++  C +  ++S  L  H R H   +    
Sbjct: 2   SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.7 bits (130), Expect = 3e-10
 Identities = 19/42 (45%), Positives = 21/42 (50%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G KP+KC  C   FTQ   L  H   HTGEKP   
Sbjct: 2   SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.4 bits (119), Expect = 9e-09
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
           +   + +G+KPF C  C     Q+S L +H R+H  E+      
Sbjct: 2   SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.7 bits (130), Expect = 3e-10
 Identities = 17/42 (40%), Positives = 21/42 (50%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G KP+KC  C   F  +  L RH + HT EKP   
Sbjct: 2   SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 2e-08
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+KPF C  C  +    S L  H  +H  E+    
Sbjct: 2   SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 53.7 bits (130), Expect = 3e-10
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G + ++C  C   F Q     +H   HTGEKP   
Sbjct: 2   SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 49.5 bits (119), Expect = 8e-09
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   +  G++   CS C     Q+SN   H RIH  E+    
Sbjct: 2   SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.7 bits (130), Expect = 3e-10
 Identities = 17/42 (40%), Positives = 19/42 (45%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
             SS  G KPYKC  C   +  K  L  H   HTGE+P    
Sbjct: 3   SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.5 bits (127), Expect = 7e-10
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
           +   + TG+KP+ C  C    N   NL  H ++H  ER      
Sbjct: 2   SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSS 45

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.7 bits (130), Expect = 3e-10
 Identities = 20/41 (48%), Positives = 20/41 (48%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KPY C  C   F QK  L RH   HTGEKP   
Sbjct: 3   SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 2e-08
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+KP+ C+ C  +  Q S+L  H RIH  E+    
Sbjct: 2   SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 54.8 bits (133), Expect = 3e-10
 Identities = 10/54 (18%), Positives = 14/54 (25%), Gaps = 8/54 (14%)

Query: 81  KNHLSSH--------LGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
           K  L  H             + C  C   FT++  + RH     G         
Sbjct: 28  KQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 52.1 bits (126), Expect = 2e-09
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGE----KPFACHLCPYRASRKYYITA 138
              +H G KPY C HCD  F QK +L  H   +         F C  C    +R+  +  
Sbjct: 6   SGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMAR 65

Query: 139 H 139
           H
Sbjct: 66  H 66

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 49.8 bits (120), Expect = 1e-08
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTERE----YACGKC 254
           +   THTG+KP+ACS+CD T  Q   L  H + +         + C KC
Sbjct: 5   SSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKC 53

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 46.0 bits (110), Expect = 4e-07
 Identities = 7/48 (14%), Positives = 11/48 (22%), Gaps = 4/48 (8%)

Query: 211 HVMTHTG----DKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
           H   +         F CS C  T  + + +  H               
Sbjct: 34  HFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 53.3 bits (129), Expect = 3e-10
 Identities = 17/42 (40%), Positives = 22/42 (52%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G KP+KC  C   F+++  L  H   HTGEKP   
Sbjct: 2   SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 47.9 bits (115), Expect = 3e-08
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+KPF C  C    ++ S L  H ++H  E+    
Sbjct: 2   SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 53.3 bits (129), Expect = 3e-10
 Identities = 16/42 (38%), Positives = 20/42 (47%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS    K ++C  C   FT K  L +H   HTGEKP   
Sbjct: 2   SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 10/42 (23%), Positives = 15/42 (35%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + +  K   C  C       S+L  H RIH  E+    
Sbjct: 2   SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.3 bits (129), Expect = 3e-10
 Identities = 18/41 (43%), Positives = 20/41 (48%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KPY+C  C   FT +  L  H   HTGEKP   
Sbjct: 3   SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 3e-08
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+KP+ C+ C       SNL TH +IH  E+    
Sbjct: 2   SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.3 bits (129), Expect = 4e-10
 Identities = 20/41 (48%), Positives = 22/41 (53%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KPY C  C   F+QK +L  H  THTGEKP   
Sbjct: 3   SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 3e-08
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + +G+KP+ C+ C  T +Q S L  H R H  E+    
Sbjct: 2   SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.3 bits (129), Expect = 4e-10
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS    KPYKC  C   + +++ L  H   H GEK    
Sbjct: 2   SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.0 bits (118), Expect = 1e-08
 Identities = 11/44 (25%), Positives = 19/44 (43%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
           +   + + +KP+ C  C    N+  NL  H R+H  E+      
Sbjct: 2   SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.3 bits (129), Expect = 4e-10
 Identities = 18/42 (42%), Positives = 22/42 (52%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G KPY C  C   F+ K  L  H+ TH+GEKP   
Sbjct: 2   SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 2e-08
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   +  G+KP+ CS C    +  S L  H+R H  E+    
Sbjct: 2   SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 54.4 bits (132), Expect = 4e-10
 Identities = 19/53 (35%), Positives = 26/53 (49%)

Query: 87  HLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAH 139
             G     C  C   F     L RH L+H+GEKP++C +C  R  RK  ++ H
Sbjct: 2   SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH 54

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 49.8 bits (120), Expect = 2e-08
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTERE--YACGKC 254
            H ++H+G+KP++C  C     +   +  H+R H       Y C  C
Sbjct: 25  RHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSC 71

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 49.8 bits (120), Expect = 2e-08
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGE--KPFACHLC 126
           H  SH G KPY CP C   F +K  +  H+ +H G   KP+ C  C
Sbjct: 26  HKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSC 71

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 49.0 bits (118), Expect = 4e-08
 Identities = 11/40 (27%), Positives = 15/40 (37%)

Query: 215 HTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
            +G    AC  C        +L  H   H  E+ Y+C  C
Sbjct: 2   SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVC 41

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 7/44 (15%)

Query: 83  HLSSHL------GWKPYKCPHCDHCFTQKVVLQRHL-LTHTGEK 119
            +S H+        KPY C  C   F++   L  H+   H+G  
Sbjct: 50  RMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 56.1 bits (136), Expect = 4e-10
 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 12/122 (9%)

Query: 160 KCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQY-----ACYIKTHVMT 214
           +   CS+   S   +++ H  +       ++K+FVC     + +         +  H+  
Sbjct: 5   RWDGCSQEFDS-QEQLVHH--INSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61

Query: 215 HTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYAC--GKCAYRTAALPDLKLHLKN 270
           HTG+KP  C++  C  + ++  NL+THLR H  E+ Y C    C+   +   D   H   
Sbjct: 62  HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNR 121

Query: 271 MH 272
            H
Sbjct: 122 TH 123

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 49.9 bits (120), Expect = 6e-08
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 81  KNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEKPFACH 124
             H+  H G KP+KC    C   +++   L+ HL +HTGEKP+ C 
Sbjct: 56  VVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 47.6 bits (114), Expect = 4e-07
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 81  KNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLL-THTGEKPFAC 123
           K HL SH G KPY C H  C   F+      +H   TH+ EKP+ C
Sbjct: 86  KTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVC 131

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 46.8 bits (112), Expect = 8e-07
 Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 3/46 (6%)

Query: 91  KPYKCPHCDHCFTQKVVLQRHLLT---HTGEKPFACHLCPYRASRK 133
              +   C   F  +  L  H+ +   H   K F CH        +
Sbjct: 2   TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELR 47

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 209 KTHVMTHTGDKPFACSY--CDYTCNQSSNLQTH-LRIHKTEREYAC 251
           KTH+ +HTG+KP+ C +  C    + +S+   H  R H  E+ Y C
Sbjct: 86  KTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVC 131

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 5/45 (11%)

Query: 87  HLGWKPYKCPHCDH-----CFTQKVVLQRHLLTHTGEKPFACHLC 126
           H   K + C           F  + +L  H+  HTGEKP  C   
Sbjct: 29  HGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFE 73

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 209 KTHVM-THTGDKPFACSY--CDYTCNQSSNLQTHLRIH 243
             H   TH+ +KP+ C    C       S+L+ H++  
Sbjct: 116 AKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.3 bits (129), Expect = 4e-10
 Identities = 21/41 (51%), Positives = 23/41 (56%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KPY+C  C   FTQK  L +H  THTGEKP   
Sbjct: 3   SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 3e-08
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+KP+ C  C     Q ++L  H + H  E+    
Sbjct: 2   SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.3 bits (129), Expect = 4e-10
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G +P+KC  C   F ++  L  HL  H+ EK    
Sbjct: 3   SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 5e-08
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + +G++PF C+ C     + S+L  HLR+H  E+    
Sbjct: 2   SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 52.9 bits (128), Expect = 4e-10
 Identities = 17/41 (41%), Positives = 19/41 (46%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KPY+C  C   F  K  L  H  THTGE   + 
Sbjct: 3   SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 52.9 bits (128), Expect = 5e-10
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG 252
           +   + TG+KP+ C+ C    N  SNL  H R H  E   + G
Sbjct: 2   SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG 44

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 52.9 bits (128), Expect = 4e-10
 Identities = 15/40 (37%), Positives = 17/40 (42%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFA 122
              S  G KPY C  C   F     L+ HL  HTG  P +
Sbjct: 2   SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 50.6 bits (122), Expect = 3e-09
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
              +  G+KP+ C  C         L++HLRIH      +
Sbjct: 2   SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.9 bits (128), Expect = 5e-10
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G +PY C  C   FT +  L +H   HTGEKP   
Sbjct: 3   SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 3e-08
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
           +   + TG++P+ C+ C       SNL  H +IH  E+      
Sbjct: 2   SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS 45

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.0 bits (128), Expect = 5e-10
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KP++C  C   F+    L +HL +H    P   
Sbjct: 3   SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.2 bits (113), Expect = 7e-08
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG 252
           +   + TG+KPF C  C    + S +L  HLR H+        
Sbjct: 2   SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.9 bits (128), Expect = 5e-10
 Identities = 18/41 (43%), Positives = 20/41 (48%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KPYKC  C   F  +  L  H  TH+GEKP   
Sbjct: 3   SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 6e-08
 Identities = 11/44 (25%), Positives = 18/44 (40%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
           +   + TG+KP+ C+ C       S+L  H   H  E+      
Sbjct: 2   SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS 45

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 53.4 bits (129), Expect = 5e-10
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHL-LTHTGEKPFACHLC 126
           +  SS    KPY C  C   F++   L  H+   HT E+P  C + 
Sbjct: 2   SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 46.4 bits (111), Expect = 1e-07
 Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHL-RIHKTEREYACGKC 254
           +   + +  KP+ C  C    ++  +L  H+ ++H +ER + C   
Sbjct: 2   SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.9 bits (128), Expect = 5e-10
 Identities = 20/42 (47%), Positives = 21/42 (50%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G KPYKC  C   FTQ   L  H   HTGEKP   
Sbjct: 2   SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.6 bits (117), Expect = 2e-08
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + +G+KP+ C+ C     Q+S+L  H RIH  E+    
Sbjct: 2   SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.9 bits (128), Expect = 5e-10
 Identities = 16/42 (38%), Positives = 20/42 (47%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G KPY C  C   FT +  L +H   HT +KP   
Sbjct: 2   SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 5e-08
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+KP+ C+ C       SNL  H +IH  ++    
Sbjct: 2   SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.5 bits (127), Expect = 6e-10
 Identities = 15/42 (35%), Positives = 20/42 (47%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G K Y C  C   F++   L +H   H+GEKP   
Sbjct: 2   SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.8 bits (112), Expect = 7e-08
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+K + C  C  + +++  L  H R+H  E+    
Sbjct: 2   SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.5 bits (127), Expect = 6e-10
 Identities = 17/42 (40%), Positives = 21/42 (50%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G K ++C  C   FT+K  L  H   HTGEKP   
Sbjct: 2   SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 3e-08
 Identities = 12/44 (27%), Positives = 18/44 (40%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
           +   + TG K F C+ C     + S L  H +IH  E+      
Sbjct: 2   SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 52.5 bits (127), Expect = 7e-10
 Identities = 17/42 (40%), Positives = 20/42 (47%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G KP++C HC   F  K  L  H   HTGEK    
Sbjct: 2   SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 49.1 bits (118), Expect = 1e-08
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG KPF C++C  +     NL TH RIH  E+    
Sbjct: 2   SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.5 bits (127), Expect = 7e-10
 Identities = 19/42 (45%), Positives = 21/42 (50%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
             SS  G KP+KC  C   F Q + L  HL  HTGEKP    
Sbjct: 3   SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 4e-08
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + +G+KPF C  C     Q+ +L +HLRIH  E+    
Sbjct: 2   SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 52.5 bits (127), Expect = 7e-10
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G +PY+C  C   F  K  L  H  +HTGEKP   
Sbjct: 3   SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 47.9 bits (115), Expect = 3e-08
 Identities = 11/42 (26%), Positives = 17/42 (40%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG +P+ C  C       S+L  H R H  E+    
Sbjct: 2   SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 52.9 bits (128), Expect = 8e-10
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 91  KPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAH 139
           + + C  C   F ++  L+RH  +HT EKP+ C LC    +R+  +  H
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 43.2 bits (103), Expect = 2e-06
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 81  KNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLL-THTGEK 119
           K H  SH   KPY C  C+  FT++ +L RH    H+G  
Sbjct: 19  KRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 41.3 bits (98), Expect = 1e-05
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 209 KTHVMTHTGDKPFACSYCDYTCNQSSNLQTHL-RIH 243
           K H  +HT +KP+ C  C+    +   L  H  +IH
Sbjct: 19  KRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 40.9 bits (97), Expect = 1e-05
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 219 KPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
           + F C  C     +  +L+ H R H  E+ Y CG C
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLC 36

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.5 bits (127), Expect = 8e-10
 Identities = 19/43 (44%), Positives = 20/43 (46%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
           +  SS  G KPYKC  C   F     L RH   HTGEKP    
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 7e-08
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+KP+ C+ C      +S L  H RIH  E+    
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.5 bits (127), Expect = 8e-10
 Identities = 18/41 (43%), Positives = 19/41 (46%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G K +KC  C   FTQ   L  H   HTGEKP   
Sbjct: 3   SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.4 bits (119), Expect = 9e-09
 Identities = 15/42 (35%), Positives = 20/42 (47%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   +  G K F C+ C  T  QSS+L  H RIH  E+    
Sbjct: 2   SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.2 bits (126), Expect = 8e-10
 Identities = 19/41 (46%), Positives = 21/41 (51%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KPY+C  C   FT+K  L  H   HTGEKP   
Sbjct: 3   SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 3e-08
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+KP+ CS C  +  + S L  H +IH  E+    
Sbjct: 2   SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.1 bits (126), Expect = 9e-10
 Identities = 16/41 (39%), Positives = 18/41 (43%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G + Y+C  C   F QK  L  H   H GEKP   
Sbjct: 3   SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.1 bits (118), Expect = 1e-08
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
           +   + TG++ + CS C     Q S L  H RIH+ E+      
Sbjct: 2   SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.1 bits (126), Expect = 9e-10
 Identities = 21/42 (50%), Positives = 22/42 (52%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G KPYKC  C   FTQ   L RH   HTGEKP   
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 6e-08
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+KP+ C+ C     Q+S+L  H  IH  E+    
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 52.1 bits (126), Expect = 1e-09
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G  PY+C  C   F++K  L  H  TH+G+   + 
Sbjct: 3   SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 45.6 bits (109), Expect = 2e-07
 Identities = 9/43 (20%), Positives = 19/43 (44%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG 252
           +   + TG+ P+ C  C    ++   L +H + H  +   + G
Sbjct: 2   SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG 44

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.1 bits (126), Expect = 1e-09
 Identities = 18/41 (43%), Positives = 22/41 (53%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KP+KC  C   + Q+V L +H   HTGEKP   
Sbjct: 3   SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.7 bits (117), Expect = 2e-08
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
           +   + TG+KPF C  C  + NQ  +L  H R+H  E+      
Sbjct: 2   SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 52.1 bits (126), Expect = 1e-09
 Identities = 17/42 (40%), Positives = 20/42 (47%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G KPY C  C   F+ K  L  H  +HTG KP   
Sbjct: 2   SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 47.5 bits (114), Expect = 4e-08
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG KP+ CS C  T +  S L  H R H   +    
Sbjct: 2   SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.1 bits (126), Expect = 1e-09
 Identities = 19/42 (45%), Positives = 19/42 (45%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
             SS  G KPYKC  C   FTQ   L  H   HTG KP    
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.1 bits (118), Expect = 1e-08
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+KP+ C+ C     Q+S+L  H RIH   +    
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.2 bits (126), Expect = 1e-09
 Identities = 17/41 (41%), Positives = 19/41 (46%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KPY+C  C   F +K  L  H   HTGE P   
Sbjct: 3   SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 3e-08
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+KP+ CS C  +  + S L  H RIH  E     
Sbjct: 2   SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.1 bits (126), Expect = 1e-09
 Identities = 20/42 (47%), Positives = 22/42 (52%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G KPYKC  C   F+Q   L RH   HTGEKP   
Sbjct: 2   SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 6e-08
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+KP+ C+ C    +Q+S L  H RIH  E+    
Sbjct: 2   SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 51.8 bits (125), Expect = 1e-09
 Identities = 15/42 (35%), Positives = 19/42 (45%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G KP+KC  C   F        H  +H+GEKP   
Sbjct: 2   SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 46.8 bits (112), Expect = 8e-08
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + +G+KPF C  C      +S   +H R H  E+    
Sbjct: 2   SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 51.8 bits (125), Expect = 1e-09
 Identities = 15/42 (35%), Positives = 19/42 (45%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G KPY+C  C   F  K +L  H  TH G    + 
Sbjct: 2   SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 47.9 bits (115), Expect = 3e-08
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG 252
           +   + +G+KP+ C+ C       S L  H R H      + G
Sbjct: 2   SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG 44

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 51.7 bits (125), Expect = 1e-09
 Identities = 17/42 (40%), Positives = 19/42 (45%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G KPY C  C   F  K  L  H  THTGE   + 
Sbjct: 2   SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 48.6 bits (117), Expect = 2e-08
 Identities = 13/43 (30%), Positives = 18/43 (41%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG 252
           +   + TG KP+ C+ C       S L  H R H  E   + G
Sbjct: 2   SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG 44

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 51.9 bits (125), Expect = 1e-09
 Identities = 12/40 (30%), Positives = 16/40 (40%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFA 122
              S  G  PY C  C   FTQ+  L  H  + +   P +
Sbjct: 2   SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 41.5 bits (98), Expect = 6e-06
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
           +  G+ P+ C  C  +  Q  +L  H R        +
Sbjct: 5   SSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.7 bits (125), Expect = 1e-09
 Identities = 19/42 (45%), Positives = 22/42 (52%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G KPY+C  C   F QK  L +H   HTGEKP   
Sbjct: 2   SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 2e-08
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+KP+ C  C     Q +NL  H RIH  E+    
Sbjct: 2   SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.7 bits (125), Expect = 1e-09
 Identities = 18/41 (43%), Positives = 19/41 (46%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KPYKC  C   F     L  H + HTGEKP   
Sbjct: 3   SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.7 bits (117), Expect = 2e-08
 Identities = 14/44 (31%), Positives = 20/44 (45%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
           +   + TG+KP+ C+ C       SNL TH  IH  E+      
Sbjct: 2   SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS 45

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.7 bits (125), Expect = 1e-09
 Identities = 17/42 (40%), Positives = 21/42 (50%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G +P+KC  C   F Q   L +H   HTGEKP   
Sbjct: 2   SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 3e-08
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
           +   + TG++P  C+ C  +  QS++L  H RIH  E+      
Sbjct: 2   SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.8 bits (125), Expect = 1e-09
 Identities = 17/41 (41%), Positives = 21/41 (51%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KPY+C  C   F+    L +H +THT EKP   
Sbjct: 3   SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.2 bits (113), Expect = 6e-08
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   +  G+KP+ CS C  + + S  L  H   H  E+    
Sbjct: 2   SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.7 bits (125), Expect = 2e-09
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KPY+C  C   F+ +  L  H   H+G+KP   
Sbjct: 3   SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 1e-07
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
              + TG+KP+ CS C    +   +L  H RIH  ++    
Sbjct: 3   SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 17/42 (40%), Positives = 20/42 (47%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G KPY C  C   F+    L  H + HTGEKP   
Sbjct: 2   SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 1e-07
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
           +   + TG KP+ C+ C    +  S+L TH  IH  E+      
Sbjct: 2   SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSS 45

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 20/41 (48%), Positives = 20/41 (48%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KPYKC  C   FTQ   L RH   HTG KP   
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 7e-08
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+KP+ C+ C     Q+S+L  H R+H   +    
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 53.2 bits (129), Expect = 2e-09
 Identities = 20/44 (45%), Positives = 26/44 (59%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
           H+S HLG +PY C  C   F  K  L  H+  HTG KP+ C++C
Sbjct: 28  HMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNIC 71

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 51.3 bits (124), Expect = 8e-09
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
            H+  H G +P+ C  C        +L  H++IH   + Y C  C
Sbjct: 27  RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNIC 71

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 50.5 bits (122), Expect = 1e-08
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 85  SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAH 139
           S   G K Y C  C   FT K    RH+  H G +P+ C +C  +   K+++  H
Sbjct: 3   SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 56

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 47.1 bits (113), Expect = 3e-07
 Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
           H+  H G KPY+C  C   F  +    RH    +  K +     
Sbjct: 56  HMKIHTGIKPYECNICAKRFMWRDSFHRH--VTSCTKSYEAAKA 97

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 46.7 bits (112), Expect = 4e-07
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
             +GDK + C  C  +    S    H+ +H   R Y CG C
Sbjct: 4   GSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVC 43

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 43.2 bits (103), Expect = 6e-06
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
            H+  HTG KP+ C+ C        +   H  +    + Y   K 
Sbjct: 55  GHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKA 97

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.3 bits (124), Expect = 2e-09
 Identities = 21/41 (51%), Positives = 21/41 (51%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KPYKC  C   FTQ   L RH   HTGEKP   
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 5e-08
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+KP+ C+ C     Q+S+L  H  IH  E+    
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 16/40 (40%), Positives = 20/40 (50%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFA 122
              S  G KPY+C  C   F+QK  L  H+  HTG  P +
Sbjct: 2   SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 46.4 bits (111), Expect = 1e-07
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
              +  G+KP+ C  C    +Q  +L  H+R+H      +
Sbjct: 2   SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 52.2 bits (126), Expect = 2e-09
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 209 KTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKL 266
           K H  +HT   P+ C +  CD   +  S L+ H ++H          C++          
Sbjct: 20  KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLK 79

Query: 267 HLKNMH 272
           H+   H
Sbjct: 80  HVAECH 85

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 81  KNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITA 138
           K H  SH    PY+CPH  CD  F+    L+RH   H G        C +          
Sbjct: 20  KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLK 79

Query: 139 H 139
           H
Sbjct: 80  H 80

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)

Query: 93  YKCPH--CDHCFTQKVVLQRHLLTHTGEKPFAC 123
           Y C    C   F +   L+ H  +HT + P+ C
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC 34

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 52.2 bits (126), Expect = 2e-09
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 86  SHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
            H+  K + CP   C   F  K  L+ H+  H+  + + C   
Sbjct: 32  QHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 49.9 bits (120), Expect = 1e-08
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 213 MTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYACGKC 254
             H   K F+C    C  + N   +L+ H+++H   R+Y C   
Sbjct: 31  YQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 45.6 bits (109), Expect = 4e-07
 Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 3/40 (7%)

Query: 87  HLGWKPYKCPH--CDHCFTQKVVLQRHL-LTHTGEKPFAC 123
             G     C    C   F+ +  L  H    H  +K F+C
Sbjct: 2   SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSC 41

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 8/48 (16%)

Query: 215 HTGDKPFACSY--CDYTCNQSSNLQTHLRIHKT-ER-----EYACGKC 254
            +G     C +  C    +    L  H +     ++     E ACGK 
Sbjct: 2   SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKS 49

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 14/41 (34%), Positives = 16/41 (39%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G +PY C  C   F +   L  HL  H  EK    
Sbjct: 3   SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 2e-07
 Identities = 10/41 (24%), Positives = 20/41 (48%)

Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
              + +G++P+ C+ C     + S+L  HL+ H  E+    
Sbjct: 3   SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.0 bits (123), Expect = 2e-09
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KP+ C  C   F+  + L +H   HTGEKP   
Sbjct: 3   SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 9e-08
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+KPF C  C    +    L  H RIH  E+    
Sbjct: 2   SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.0 bits (123), Expect = 2e-09
 Identities = 18/41 (43%), Positives = 18/41 (43%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KPY C  C   F     LQ H   HTGEKP   
Sbjct: 3   SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 1e-07
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+KP+ C  C       S LQ H RIH  E+    
Sbjct: 2   SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.0 bits (123), Expect = 2e-09
 Identities = 21/41 (51%), Positives = 21/41 (51%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KPYKC  C   FTQ   L RH   HTGEKP   
Sbjct: 3   SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 3e-08
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG KP+ C+ C     Q+S+L  H  IH  E+    
Sbjct: 2   SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 52.8 bits (128), Expect = 2e-09
 Identities = 14/45 (31%), Positives = 19/45 (42%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
                    K + C  C   FT+   L  H  THT E+P+ C +C
Sbjct: 7   GGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDIC 51

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 52.8 bits (128), Expect = 3e-09
 Identities = 15/45 (33%), Positives = 18/45 (40%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
              +     K F C +C     +S NL  H R H  ER Y C  C
Sbjct: 7   GGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDIC 51

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 52.1 bits (126), Expect = 4e-09
 Identities = 25/144 (17%), Positives = 40/144 (27%), Gaps = 44/144 (30%)

Query: 108 LQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEP 167
                L    +K F C  C    ++ Y +  H                    +  H    
Sbjct: 5   SSGGRLPSKTKKEFICKFCGRHFTKSYNLLIH--------------------ERTH---- 40

Query: 168 ISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCD 227
                               TD++ + C  C  A +   +++ H   H+ +KPF C  C 
Sbjct: 41  --------------------TDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECG 80

Query: 228 YTCNQSSNLQTHLRIHKTEREYAC 251
               QS  L  H  +H        
Sbjct: 81  KGFCQSRTLAVHKTLHMQTSSPTA 104

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 50.9 bits (123), Expect = 1e-08
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 87  HLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
           H   +PY C  C   F ++  L+ H   H+ EKPF C  C
Sbjct: 40  HTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 50.5 bits (122), Expect = 1e-08
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 188 TDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
             KK+F+C  C      +  +  H  THT ++P+ C  C     +  +L+ H  IH  E+
Sbjct: 13  KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK 72

Query: 248 EYACGKC 254
            + C +C
Sbjct: 73  PFKCQEC 79

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 49.4 bits (119), Expect = 4e-08
 Identities = 12/41 (29%), Positives = 13/41 (31%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           H   H   KP+KC  C   F Q   L  H   H        
Sbjct: 64  HRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.0 bits (123), Expect = 2e-09
 Identities = 18/41 (43%), Positives = 18/41 (43%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KPYKC  C   F     L  H   HTGEKP   
Sbjct: 3   SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 4e-08
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+KP+ C  C  +    S+L  H RIH  E+    
Sbjct: 2   SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.0 bits (123), Expect = 3e-09
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G  PY+C  C   F++K  L  H  TH GEKP   
Sbjct: 3   SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 10/42 (23%), Positives = 18/42 (42%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+ P+ C  C    ++   L +H R H  E+    
Sbjct: 2   SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 3e-09
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KPY+C  C   F+ +  L  H   HTG+KP   
Sbjct: 3   SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 2e-07
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
           +   + TG+KP+ C+ C    +  S+L TH  IH  ++      
Sbjct: 2   SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 52.9 bits (128), Expect = 3e-09
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 83  HLSSHL---GWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
            +  HL   G + + C  C   F +   L+RH L HTGEKPF C 
Sbjct: 22  AMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 66

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 36/165 (21%), Positives = 58/165 (35%), Gaps = 51/165 (30%)

Query: 91  KPYKCPH--CDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALL 148
           +   CPH  C   F     +++HL TH G +        +                    
Sbjct: 4   RTIACPHKGCTKMFRDNSAMRKHLHTH-GPR-------VH-------------------- 35

Query: 149 LQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFA--CPYATQYAC 206
                       C  C +    + S++  H L       T +K F C    C        
Sbjct: 36  -----------VCAECGKAFV-ESSKLKRHQL-----VHTGEKPFQCTFEGCGKRFSLDF 78

Query: 207 YIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREY 249
            ++THV  HTGD+P+ C +  C+    QS+NL++H+  H   +  
Sbjct: 79  NLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 49.4 bits (119), Expect = 5e-08
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 191 KKFVCFACPYATQYACYIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTERE 248
           +  VC  C  A   +  +K H + HTG+KPF C++  C    +   NL+TH+RIH  +R 
Sbjct: 33  RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 92

Query: 249 YAC 251
           Y C
Sbjct: 93  YVC 95

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 81  KNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEKPFAC 123
           K H   H G KP++C    C   F+    L+ H+  HTG++P+ C
Sbjct: 51  KRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 95

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 46.4 bits (111), Expect = 7e-07
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 81  KNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEKPF 121
           + H+  H G +PY CP   C+  F Q   L+ H+LTH   K  
Sbjct: 81  RTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 209 KTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           + H+ TH G +   C+ C     +SS L+ H  +H  E+ + C
Sbjct: 24  RKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 65

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 3e-09
 Identities = 19/41 (46%), Positives = 21/41 (51%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KPY+C  C   F+Q   L RH   HTGEKP   
Sbjct: 3   SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.8 bits (112), Expect = 9e-08
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG KP+ C+ C    +Q+S L  H R+H  E+    
Sbjct: 2   SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 3e-09
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KPY+C  C   F+    L +H   H+GEKP   
Sbjct: 3   SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.3 bits (111), Expect = 1e-07
 Identities = 11/44 (25%), Positives = 20/44 (45%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
           +   + TG+KP+ C  C    +  ++L  H R+H  E+      
Sbjct: 2   SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 4e-09
 Identities = 15/42 (35%), Positives = 17/42 (40%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G KPY C  C   F     L +HL  HT E     
Sbjct: 2   SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 4e-08
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
              + TG+KP++C+ C      S++L  HLR+H  E     
Sbjct: 3   SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 4e-09
 Identities = 20/42 (47%), Positives = 21/42 (50%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
             SS  G KPYKC  C   F +   L RH L HTGEKP    
Sbjct: 3   SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 4e-08
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
           +   + TG+KP+ C  C     ++S+L  H  IH  E+      
Sbjct: 2   SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS 45

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 50.6 bits (122), Expect = 4e-09
 Identities = 18/41 (43%), Positives = 21/41 (51%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KPY+C  C   F+Q   L +H   HTGEKP   
Sbjct: 3   SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 46.3 bits (111), Expect = 1e-07
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+KP+ C  C    +Q+++L  H R+H  E+    
Sbjct: 2   SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 50.9 bits (121), Expect = 4e-09
 Identities = 14/56 (25%), Positives = 26/56 (46%)

Query: 64  QFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
           +++C  C         +K H+ +H   +PY C +C+  F  K  L +H+ +    K
Sbjct: 1   KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 50.1 bits (119), Expect = 7e-09
 Identities = 15/56 (26%), Positives = 29/56 (51%)

Query: 192 KFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
           K++C  C    +    +K H+ THT  +P+ C+YC+++     NL  H++     +
Sbjct: 1   KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 43.2 bits (101), Expect = 2e-06
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 93  YKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNS 142
           Y C  C     +  +L++H+ THT  +P+ C  C +    K  +T H+ S
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 39.7 bits (92), Expect = 3e-05
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 223 CSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
           C  C     + S L+ H+R H   R Y C  C +      +L  H+K
Sbjct: 4   CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 50.3 bits (121), Expect = 4e-09
 Identities = 16/41 (39%), Positives = 18/41 (43%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KPY C  C   F     L +H   H+GEKP   
Sbjct: 3   SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 48.0 bits (115), Expect = 3e-08
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+KP+ C  C  +   +S L  H R+H  E+    
Sbjct: 2   SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.2 bits (121), Expect = 5e-09
 Identities = 16/41 (39%), Positives = 18/41 (43%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KPYKC  C   F +   L  H   HTG +P   
Sbjct: 3   SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.6 bits (117), Expect = 2e-08
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
           +   + +G+KP+ CS C    ++ ++L  H RIH   R      
Sbjct: 2   SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 50.2 bits (121), Expect = 5e-09
 Identities = 16/41 (39%), Positives = 19/41 (46%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KP++C  C   F+    L  H   HTGEKP   
Sbjct: 3   SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 47.5 bits (114), Expect = 5e-08
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG+KPF C+ C  + + SS L TH RIH  E+    
Sbjct: 2   SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 50.2 bits (121), Expect = 5e-09
 Identities = 17/42 (40%), Positives = 20/42 (47%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
             SS  G K YKC  C   F++   L +H   HTGEKP    
Sbjct: 3   SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 47.1 bits (113), Expect = 6e-08
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
           +   + TG+K + C+ C    +++S L  H +IH  E+      
Sbjct: 2   SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.2 bits (121), Expect = 5e-09
 Identities = 16/41 (39%), Positives = 19/41 (46%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G + Y+C  C   F +K  L  H   HTGEKP   
Sbjct: 3   SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 7e-08
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + TG++ + CS C     + S L  H RIH  E+    
Sbjct: 2   SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 50.9 bits (123), Expect = 5e-09
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
                   + + C  C  + + SS+L  H R H  E+ Y C +C
Sbjct: 9   SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDEC 52

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 49.7 bits (120), Expect = 1e-08
 Identities = 16/40 (40%), Positives = 20/40 (50%)

Query: 87  HLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
               + YKC  C   F+    L +H  THTGEKP+ C  C
Sbjct: 13  QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDEC 52

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 46.7 bits (112), Expect = 2e-07
 Identities = 16/35 (45%), Positives = 17/35 (48%)

Query: 87  HLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPF 121
           H G KPYKC  C   F Q+  L  H   HTG  P 
Sbjct: 41  HTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 43.2 bits (103), Expect = 3e-06
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREY 249
            H  THTG+KP+ C  C     Q S+L  H R+H      
Sbjct: 36  KHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.8 bits (120), Expect = 6e-09
 Identities = 18/41 (43%), Positives = 19/41 (46%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KPY C +C   F     L RH   HTGEKP   
Sbjct: 3   SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 4e-08
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
           +   + +G+KP+ C YC      S+ L  H RIH  E+    
Sbjct: 2   SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.9 bits (120), Expect = 6e-09
 Identities = 15/42 (35%), Positives = 19/42 (45%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           +  SS  G KPYKC  C   F       +H   HTG++P   
Sbjct: 2   SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 1e-07
 Identities = 11/44 (25%), Positives = 19/44 (43%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
           +   + TG+KP+ C  C      +S+   H R+H  +R      
Sbjct: 2   SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 49.0 bits (118), Expect = 1e-08
 Identities = 14/39 (35%), Positives = 17/39 (43%)

Query: 85  SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           S   G  PY+C  C   F +K  L  H  TH GE   + 
Sbjct: 3   SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 47.9 bits (115), Expect = 3e-08
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG 252
             +G+ P+ CS C    N+   L +H R H  E   + G
Sbjct: 4   GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG 42

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 50.1 bits (121), Expect = 1e-08
 Identities = 19/44 (43%), Positives = 25/44 (56%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
           HL  H   +PY C +C   F QK  +++H   HTGEKP  C +C
Sbjct: 20  HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 50.1 bits (121), Expect = 1e-08
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
           TH++ H+  +P+ C YC    +Q S+++ H  IH  E+ + C  C
Sbjct: 19  THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 44.7 bits (107), Expect = 1e-06
 Identities = 21/56 (37%), Positives = 27/56 (48%)

Query: 188 TDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
           +D + + C  C         +K H   HTG+KP  C  C    +QSSNL TH R H
Sbjct: 25  SDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 42.8 bits (102), Expect = 5e-06
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 93  YKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAH 139
           + C  C   F +   L  HLL H+  +P+ C  C  R  +K  +  H
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 37.0 bits (87), Expect = 6e-04
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 87  HLGWKPYKCPHCDHCFTQKVVLQRHLLTHTG 117
           H G KP+KC  C   F+Q   L  H   HTG
Sbjct: 52  HTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 49.8 bits (120), Expect = 1e-08
 Identities = 20/53 (37%), Positives = 27/53 (50%)

Query: 87  HLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAH 139
           H G KPY C  C   F++  +L +H   HTGEKP+ C  C    S+   +  H
Sbjct: 9   HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 48.6 bits (117), Expect = 3e-08
 Identities = 15/40 (37%), Positives = 16/40 (40%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFA 122
           H   H G KPYKC  C   F+Q   L  H   HT      
Sbjct: 33  HQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSSG 72

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 48.6 bits (117), Expect = 4e-08
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC 254
               H+G+KP+ C  C    ++SS L  H R+H  E+ Y C +C
Sbjct: 5   SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLEC 48

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 45.5 bits (109), Expect = 5e-07
 Identities = 19/63 (30%), Positives = 29/63 (46%)

Query: 188 TDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTER 247
           + +K + C  C  A   +  +  H   HTG+KP+ C  C    +Q+S L  H RIH +  
Sbjct: 10  SGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP 69

Query: 248 EYA 250
              
Sbjct: 70  SSG 72

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 49.1 bits (118), Expect = 1e-08
 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHL-LTHTGEKPFAC 123
           +  SS  G KPY+C  C   F Q   L RH    HTGEKP   
Sbjct: 2   SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 42.9 bits (102), Expect = 2e-06
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLR-IHKTEREYAC 251
           +   + TG KP+ C  C     Q+++L  H R  H  E+    
Sbjct: 2   SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.0 bits (118), Expect = 1e-08
 Identities = 16/41 (39%), Positives = 19/41 (46%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KPYKC  C   F     L +H   H+GE+P   
Sbjct: 3   SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 1e-07
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
              + TG+KP+ C  C      SS+L  H  +H  ER    
Sbjct: 3   SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.1 bits (118), Expect = 1e-08
 Identities = 15/41 (36%), Positives = 18/41 (43%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G KP++C  C   F+    L  H   HTGE P   
Sbjct: 3   SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 1e-07
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK 253
           +   + TG+KP  C  C  + + +S L  H RIH  E       
Sbjct: 2   SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS 45

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 48.7 bits (116), Expect = 2e-08
 Identities = 15/39 (38%), Positives = 20/39 (51%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKP 120
           +  SS  G  P+KC  CD  FTQ+  L +H  TH  +  
Sbjct: 2   SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 43.7 bits (103), Expect = 1e-06
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG 252
           +   +  G+ PF CS CD    Q + L  H R H  +   + G
Sbjct: 2   SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG 44

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 51.4 bits (124), Expect = 3e-08
 Identities = 22/45 (48%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 81  KNHLSSHLGWKPYKC--PHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           + HL  H G KP+ C    C+  FT    L RH LTHTGEK F C
Sbjct: 31  QAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTC 75

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 51.4 bits (124), Expect = 3e-08
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 82  NHLSSHLGWKPYKC--PHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
              +  + +K Y C    C   + +   LQ HL  HTGEKPF C 
Sbjct: 2   GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCK 46

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 209 KTHVMTHTGDKPFACS--YCDYTCNQSSNLQTHLRIH---KTEREYACGKC 254
           K H  +HT   P+ C    CD   +  S L+ H ++H     +++ +C   
Sbjct: 123 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFV 173

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 27/171 (15%), Positives = 42/171 (24%), Gaps = 53/171 (30%)

Query: 83  HLSSHLGWKPYKC--PHCDHCFTQKVVLQRHLLTHTGEK--PFACHL--CPYRASRKYYI 136
           H  +H G K + C    CD  FT K  +++H       K   + CH   C     +   +
Sbjct: 63  HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQL 122

Query: 137 TAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVC- 195
             H                    +  H                        T +  + C 
Sbjct: 123 KVH--------------------QFSH------------------------TQQLPYECP 138

Query: 196 -FACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTH-LRIHK 244
              C         +K H   H G        C +     +    H    H+
Sbjct: 139 HEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 7/51 (13%)

Query: 211 HVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTER-----EYACGKC 254
                   K + CS+  C    N++  LQ HL  H  E+     E  C K 
Sbjct: 3   EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKG 53

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 209 KTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYAC 251
           + H+  HTG+KPF C    C+       +L  H   H  E+ + C
Sbjct: 31  QAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTC 75

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 44.5 bits (106), Expect = 8e-06
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 81  KNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
           K H  SH    PY+CPH  CD  F+    L+RH   H G        C
Sbjct: 123 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSC 170

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 81  KNHLSSHLGWK--PYKC--PHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           K H +     K   Y C   +C   F +   L+ H  +HT + P+ C
Sbjct: 91  KKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC 137

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 27/160 (16%), Positives = 43/160 (26%), Gaps = 44/160 (27%)

Query: 111 HLLTHTGEKPFACHL--CPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVH----- 163
                   K + C    C    ++ + + AH                     C H     
Sbjct: 3   EKALPVVYKRYICSFADCGAAYNKNWKLQAH--------------------LCKHTGEKP 42

Query: 164 --CSEPIS----SDMSEIIEHCLVCPNATRTDKKKFVC--FACPYATQYACYIKTHVMTH 215
             C E       + +  +  H L     T T +K F C    C         +K H    
Sbjct: 43  FPCKEEGCEKGFTSLHHLTRHSL-----THTGEKNFTCDSDGCDLRFTTKANMKKHFNRF 97

Query: 216 TGDK--PFACSY--CDYTCNQSSNLQTHLRIHKTEREYAC 251
              K   + C +  C     + + L+ H   H  +  Y C
Sbjct: 98  HNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC 137

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 48.0 bits (115), Expect = 3e-08
 Identities = 14/38 (36%), Positives = 17/38 (44%)

Query: 85  SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFA 122
           S   G + Y+C  C   F QK  L  H   HTG  P +
Sbjct: 3   SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 42.6 bits (101), Expect = 2e-06
 Identities = 9/37 (24%), Positives = 15/37 (40%)

Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYA 250
             +G + + C  C  +  Q  +L  H RIH      +
Sbjct: 4   GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 47.6 bits (113), Expect = 5e-08
 Identities = 15/42 (35%), Positives = 19/42 (45%)

Query: 85  SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC 126
           SS    K   C  C   F     L RH L+H+GEKP++    
Sbjct: 5   SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 10/42 (23%), Positives = 15/42 (35%)

Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCA 255
           +    K  AC  C        +L  H   H  E+ Y+ G  +
Sbjct: 6   SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 36.1 bits (83), Expect = 6e-04
 Identities = 8/41 (19%), Positives = 20/41 (48%)

Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYC 226
           +   +K+  C  C    +   ++  H ++H+G+KP++    
Sbjct: 6   SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 76  ARIAIKNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEKPFACHL--CPYRAS 131
                          + + C H  C   + +   L+ H  THTGEKPF+C    C  R +
Sbjct: 1   GSSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFA 60

Query: 132 RKYYITAHL 140
           R   ++ H 
Sbjct: 61  RSDELSRHR 69

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 45.5 bits (108), Expect = 5e-07
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 182 CPNATRTDKKKFVCF--ACPYATQYACYIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQ 237
            P    +  +  +C    C      + ++K H  THTG+KPF+CS+  C+    +S  L 
Sbjct: 7   GPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELS 66

Query: 238 THLRIH 243
            H R H
Sbjct: 67  RHRRTH 72

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 39.3 bits (92), Expect = 8e-05
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 209 KTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYAC 251
               +  +  +   CS+  C  T  +SS+L+ H R H  E+ ++C
Sbjct: 6   SGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSC 50

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 46.4 bits (111), Expect = 1e-07
 Identities = 13/41 (31%), Positives = 15/41 (36%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS  G K + C  C   F     L+ H   H GEK    
Sbjct: 3   SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC 251
              + +G+K   C  C       S L+ H R+H  E+    
Sbjct: 3   SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 46.4 bits (111), Expect = 1e-07
 Identities = 13/41 (31%), Positives = 16/41 (39%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
             SS    K Y C  C   FT+   L RH   HT +   + 
Sbjct: 3   SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 45.6 bits (109), Expect = 2e-07
 Identities = 9/42 (21%), Positives = 17/42 (40%)

Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG 252
              + T  K + C+ C     +  +L  H +IH  +   + G
Sbjct: 3   SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG 44

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 45.4 bits (108), Expect = 3e-07
 Identities = 10/39 (25%), Positives = 22/39 (56%)

Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG 252
             +G+KP++C+ C  T + ++ L  H ++H  +   + G
Sbjct: 4   GSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG 42

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 12/39 (30%), Positives = 16/39 (41%)

Query: 85  SSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFAC 123
           S   G KPY C  C   F+    L +H   HT +   + 
Sbjct: 3   SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 43.4 bits (102), Expect = 5e-06
 Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 9/69 (13%)

Query: 64  QFLCLFCSYVATARIAIKNHLSS-HLGWKPYK--------CPHCDHCFTQKVVLQRHLLT 114
                 C    +    +  H++  H+G             CP     F  K  L  H+  
Sbjct: 25  SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV 84

Query: 115 HTGEKPFAC 123
           HTGEK    
Sbjct: 85  HTGEKSGPS 93

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 39.2 bits (92), Expect = 3e-05
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
                TG KPF C  CD + ++S +L  H + H
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 35.4 bits (82), Expect = 8e-04
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTH 115
                 G KP++CP CD  F++   L  H   H
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 2/66 (3%)

Query: 208 IKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRI--HKTEREYACGKCAYRTAALPDLK 265
            K +    TG   F C  C    +    L  H+    H  +  +       +  + P  +
Sbjct: 7   GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKR 66

Query: 266 LHLKNM 271
             L+  
Sbjct: 67  SLLEME 72

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 38.6 bits (89), Expect = 3e-04
 Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 1/85 (1%)

Query: 160 KCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDK 219
           +C  CS    + + E+  H     +    + +        ++      +          K
Sbjct: 21  RCKDCSAAYDT-LVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQK 79

Query: 220 PFACSYCDYTCNQSSNLQTHLRIHK 244
              C YC ++     +L  H+   K
Sbjct: 80  VLKCMYCGHSFESLQDLSVHMIKTK 104

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A Length = 29

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 91  KPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
           + + C  C   F ++  L+RH  +HT EK
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLN 141
             L +      + CP C   F+  V L++H+     E    C +C    +       H+ 
Sbjct: 64  YRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVC 121

Query: 142 S 142
            
Sbjct: 122 K 122

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 37.6 bits (86), Expect = 9e-04
 Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 5/87 (5%)

Query: 186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKT 245
            R   K  +    P     + Y+    +       F C  C    + S +L+ H+R    
Sbjct: 43  IRAIVKTLIH--NPQLLDESSYLYRL-LASKAISQFVCPLCLMPFSSSVSLKQHIRYT-- 97

Query: 246 EREYACGKCAYRTAALPDLKLHLKNMH 272
           E    C  C     +      H+   H
Sbjct: 98  EHTKVCPVCKKEFTSTDSALDHVCKKH 124

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 36

 Score = 36.8 bits (84), Expect = 3e-04
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 219 KPFACSYCDYTCNQSSNLQTHLRIHKTER 247
           KPF CS C+Y     SNL+ H+  H TE+
Sbjct: 8   KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 37.7 bits (87), Expect = 3e-04
 Identities = 8/41 (19%), Positives = 13/41 (31%)

Query: 82  NHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFA 122
              S+    K   C  C     Q+  L +     +G+K   
Sbjct: 29  IRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTSG 69

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A Length = 31

 Score = 36.4 bits (85), Expect = 3e-04
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 91  KPYKC--PHCDHCFTQKVVLQRHLLTHTGEK 119
           +P+ C   +C   FT+   LQRH  THTGEK
Sbjct: 1   RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 36

 Score = 36.3 bits (83), Expect = 4e-04
 Identities = 16/29 (55%), Positives = 17/29 (58%)

Query: 91  KPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
           KPYKCP C +    K  L  HL  HTGEK
Sbjct: 8   KPYKCPQCSYASAIKANLNVHLRKHTGEK 36

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 37.2 bits (85), Expect = 9e-04
 Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 3/75 (4%)

Query: 65  FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH 124
           + C  C+   ++ +   +H           CP+C   F    + Q H  +    K   C 
Sbjct: 17  YQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEH-ESKCEYKKLTCL 73

Query: 125 LCPYRASRKYYITAH 139
            C       + I  H
Sbjct: 74  ECMRTFKSSFSIWRH 88

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 102

 Score = 37.1 bits (85), Expect = 9e-04
 Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 5/73 (6%)

Query: 184 NATRTDKKKFVCFACPYATQYACYIKTHVMT-HTG---DKPFACSYCDYTCNQSSNLQTH 239
              +  +  + C  C + T        HV + H     +  + C  C++   +   L  H
Sbjct: 10  QQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEH 69

Query: 240 -LRIHKTEREYAC 251
            L+ H  E  +  
Sbjct: 70  NLKYHPGEENFKL 82

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	274
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	100.0
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	100.0
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.96
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.94
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.92
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.92
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.91
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.9
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.9
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.9
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.9
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.9
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.89
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.89
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.87
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.85
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.85
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.85
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.84
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.83
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.83
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.83
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.8
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.8
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.8
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.79
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.79
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.78
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.77
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.77
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.77
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.76
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.76
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.75
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.75
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.74
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.73
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.71
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.7
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.69
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.67
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.67
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.67
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.67
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.66
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.65
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.64
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.64
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.63
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.63
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.63
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.63
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.63
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.63
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.63
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.62
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.61
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.6
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.6
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.58
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.58
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.58
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.57
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.57
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.56
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.55
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.54
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.54
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.54
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.53
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.51
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.5
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.49
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.46
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.45
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.45
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.44
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.4
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.39
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.38
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.38
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.38
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.38
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.38
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.38
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.38
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.38
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.37
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.37
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.37
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.37
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.37
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.37
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.37
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.37
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.37
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.37
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.37
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.37
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.37
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.37
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.37
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.37
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.37
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.36
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.36
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.36
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.36
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.36
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.36
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.36
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.36
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.36
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.36
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.36
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.35
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.35
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.35
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.35
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.35
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.34
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.34
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.34
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.33
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.33
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.32
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.32
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.29
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.29
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.28
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.27
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.26
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.25
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.25
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.25
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.24
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.24
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.24
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.23
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.23
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.22
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.22
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.22
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.22
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.21
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.2
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.2
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.2
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.19
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.19
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.19
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.19
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.19
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.18
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.18
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.18
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.17
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.17
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.17
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.17
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.17
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.17
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.17
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.16
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.16
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.16
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.16
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.15
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.15
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.15
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.15
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.15
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.14
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.14
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.14
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.13
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.13
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.13
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.13
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.13
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.12
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.12
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.12
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.12
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.12
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.11
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.1
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.1
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.1
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.09
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.08
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.07
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.07
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.05
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.03
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.02
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.01
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.01
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.0
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.0
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.0
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.0
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.99
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.99
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.99
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.98
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.98
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.98
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.98
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.97
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.97
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.97
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.96
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.96
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.96
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.96
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.95
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.94
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.94
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.94
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.94
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.94
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.94
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.94
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.94
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.94
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.94
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.94
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.94
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.93
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.92
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.91
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.9
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.9
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.89
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.87
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.86
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.85
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.85
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.85
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.81
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.81
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.78
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.77
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.73
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.73
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.72
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.7
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.7
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.7
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.69
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.68
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.67
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.67
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.66
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.66
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.66
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.66
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.65
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.64
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.64
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.64
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.64
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.62
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.6
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.59
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.57
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.56
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.56
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.54
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.5
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.5
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.49
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.46
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.45
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.44
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.43
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.43
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.42
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.42
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.4
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.39
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.39
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.39
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.38
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.38
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.37
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.37
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.36
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.36
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.36
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.36
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.36
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.35
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.34
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.34
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.34
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.33
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.33
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.32
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.66
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.31
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.3
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.64
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.29
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.61
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.59
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.26
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.2
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.49
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.43
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.05
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.02
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.01
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.0
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.66
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.26
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.94
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.83
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.79
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.76
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.64
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.45
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	96.32
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.1
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	93.55
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.39
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	91.66
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	91.33
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	91.05
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	90.62
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	90.21
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	89.62
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	89.29
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	88.32
3h0g_L	63	DNA-directed RNA polymerases I, II, and III subuni	87.61
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	87.53
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	87.13
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.84
2k9h_A	57	Glycoprotein; hantavirus, zinc finger, CCHC, metal	86.67
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	86.54
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	85.99
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	85.47
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	85.32
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	84.56
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	83.26
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	83.07
2dkt_A	143	Ring finger and CHY zinc finger domain- containing	82.98
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	82.03
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	81.04
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	80.9

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=1.7e-40  Score=251.23  Aligned_cols=183  Identities=30%  Similarity=0.571  Sum_probs=129.9

Q ss_pred             hhHHHHHhhhccccccccccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCCCcccCChhHHHHHHhhhcCCCC
Q psy4796          41 VMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKP  120 (274)
Q Consensus        41 ~~~~l~~H~~~~~~~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  120 (274)
                      ....|..|++       .+.++++|.|++|++.|.....|..|++.|.++++|.|..|++.|.+...|..|++.|.++++
T Consensus         5 ~~~~l~~h~~-------~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   77 (190)
T 2i13_A            5 GSSSSVAQAA-------LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP   77 (190)
T ss_dssp             ---------------------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCC
T ss_pred             hhccchhhhh-------hcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCC
Confidence            3456777777       788888888888888888888888888888888888888888888888888888888888888


Q ss_pred             ccCCCCCCccccHHHHHHHHHHHHHHHHHHhHhhcCCCccCCCCCCCCCCChhhhhhhccCCCCCcccCCCccccCCCCc
Q psy4796         121 FACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPY  200 (274)
Q Consensus       121 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~C~~C~~  200 (274)
                      |.|+.|++.|.+...|..|++.                                            |.++++|.|+.|++
T Consensus        78 ~~C~~C~~~f~~~~~l~~H~~~--------------------------------------------h~~~~~~~C~~C~~  113 (190)
T 2i13_A           78 YKCPECGKSFSQRANLRAHQRT--------------------------------------------HTGEKPYACPECGK  113 (190)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH--------------------------------------------HHTCCCEECTTTCC
T ss_pred             ccCcccCCccCCHHHHHHHHHh--------------------------------------------cCCCCCCcCCCCCC
Confidence            8888888888888888888665                                            22345688888888


Q ss_pred             cccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         201 ATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       201 ~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      .|.....|..|++.|+++++|.|++|++.|.....|..|+++|.++++|.|++|++.|.+...|..|++.|+||
T Consensus       114 ~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~  187 (190)
T 2i13_A          114 SFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK  187 (190)
T ss_dssp             EESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHTTC---
T ss_pred             ccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccCCHHHHHHHHHhcCCC
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888875

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=1e-38  Score=241.49  Aligned_cols=176  Identities=30%  Similarity=0.569  Sum_probs=144.2

Q ss_pred             CCCCCCCeeeccccCCcchhhHHHHHhhhccccccccccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCCCcc
Q psy4796          22 PGPPPADVTCLHCSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHC  101 (274)
Q Consensus        22 ~~~~~~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~  101 (274)
                      ...+.++|.|+.|++.| .+...|..|++       .|.+.++|.|++|++.|.....|..|+..|.++++|.|..|++.
T Consensus        15 ~~~~~~~~~C~~C~~~f-~~~~~l~~H~~-------~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   86 (190)
T 2i13_A           15 LEPGEKPYACPECGKSF-SRSDHLAEHQR-------THTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKS   86 (190)
T ss_dssp             ----------------C-CSSHHHHHGGG-------CC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCE
T ss_pred             hcCCCCCCcCCCCcccc-CCHHHHHHHHH-------HcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCc
Confidence            34567889999999999 99999999999       89999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHhhhcCCCCccCCCCCCccccHHHHHHHHHHHHHHHHHHhHhhcCCCccCCCCCCCCCCChhhhhhhccC
Q psy4796         102 FTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLV  181 (274)
Q Consensus       102 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~  181 (274)
                      |.+...|..|++.|.++++|.|+.|++.|.+...|..|++.                                       
T Consensus        87 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~---------------------------------------  127 (190)
T 2i13_A           87 FSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT---------------------------------------  127 (190)
T ss_dssp             ESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHH---------------------------------------
T ss_pred             cCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHH---------------------------------------
Confidence            99999999999999999999999999999999999999765                                       


Q ss_pred             CCCCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCce
Q psy4796         182 CPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREY  249 (274)
Q Consensus       182 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  249 (274)
                           |.++++|.|+.|++.|.....|..|+++|+++++|.|++|++.|.....|..|+++|++++||
T Consensus       128 -----h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~k~~  190 (190)
T 2i13_A          128 -----HTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKTS  190 (190)
T ss_dssp             -----HHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHTTC------
T ss_pred             -----hCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccCCHHHHHHHHHhcCCCCCC
Confidence                 234567999999999999999999999999999999999999999999999999999999886

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=100.00  E-value=1.3e-34  Score=218.95  Aligned_cols=170  Identities=30%  Similarity=0.560  Sum_probs=148.0

Q ss_pred             ccCCcceec--ccccccccChHHHHHHHhhcCCCCcccC--CCCCcccCChhHHHHHHhhhcCCCCccCC--CCCCcccc
Q psy4796          59 TSAKLQFLC--LFCSYVATARIAIKNHLSSHLGWKPYKC--PHCDHCFTQKVVLQRHLLTHTGEKPFACH--LCPYRASR  132 (274)
Q Consensus        59 h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~  132 (274)
                      ....++|.|  +.|++.|.....|..|++.|.++++|.|  ..|++.|.+...|..|++.|.++++|.|+  .|++.|.+
T Consensus         7 ~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~   86 (190)
T 1tf6_A            7 PVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTT   86 (190)
T ss_dssp             ---CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESC
T ss_pred             cCCCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCC
Confidence            345677888  6788888888888888888888888999  77999999999999999988888889998  89999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhcCCCccCCCCCCCCCCChhhhhhhccCCCCCcc-cCCCcccc--CCCCccccCHHHHH
Q psy4796         133 KYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATR-TDKKKFVC--FACPYATQYACYIK  209 (274)
Q Consensus       133 ~~~l~~H~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~-~~~~~~~C--~~C~~~f~~~~~l~  209 (274)
                      ...|..|++.                                           .| .+.++|.|  +.|++.|.....|.
T Consensus        87 ~~~l~~H~~~-------------------------------------------~h~~~~~~~~C~~~~C~k~f~~~~~L~  123 (190)
T 1tf6_A           87 KANMKKHFNR-------------------------------------------FHNIKICVYVCHFENCGKAFKKHNQLK  123 (190)
T ss_dssp             HHHHHHHHHT-------------------------------------------TSSTTTSCCEECSSSSCEECSSHHHHH
T ss_pred             HHHHHHHHHH-------------------------------------------hcCCCcceeeCCCCCCccccCCHHHHH
Confidence            9888888643                                           12 24567999  88999999999999


Q ss_pred             HHHhhccCCCCcccCc--CccccCCchhHHHHHhhhCCCCceecCC---CCccCCChhHHHHHHhhhcCC
Q psy4796         210 THVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYACGK---CAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       210 ~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~---C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      .|+++|+++++|.|++  |++.|.....|.+|+++|++   |.|++   |++.|.+...|.+|++.||+|
T Consensus       124 ~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~---~~C~~~~~C~~~f~~~~~l~~H~~~h~~e  190 (190)
T 1tf6_A          124 VHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLYLKHVAECHQD  190 (190)
T ss_dssp             HHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS---CCCCSTTTCCCCCSCHHHHHHHHTTCC--
T ss_pred             HHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC---CcCCCCCcCCCccccHHHHHHHHHhhcCC
Confidence            9999999999999988  99999999999999999998   99999   999999999999999999986

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=100.00  E-value=9.7e-33  Score=208.60  Aligned_cols=171  Identities=19%  Similarity=0.324  Sum_probs=149.5

Q ss_pred             CCCCCCCCeee--ccccCCcchhhHHHHHhhhccccccccccCCcceec--ccccccccChHHHHHHHhhcCCCCcccCC
Q psy4796          21 SPGPPPADVTC--LHCSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLC--LFCSYVATARIAIKNHLSSHLGWKPYKCP   96 (274)
Q Consensus        21 ~~~~~~~~~~C--~~C~~~f~~~~~~l~~H~~~~~~~~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   96 (274)
                      ......++|.|  +.|++.| .+...|..|++       .|.++++|.|  +.|++.|.....|..|++.|.++++|.|.
T Consensus         5 ~~~~~~~~~~C~~~~C~~~f-~~~~~L~~H~~-------~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   76 (190)
T 1tf6_A            5 ALPVVYKRYICSFADCGAAY-NKNWKLQAHLC-------KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCD   76 (190)
T ss_dssp             -----CCCCBCSSTTTCCBC-SSHHHHHHHHH-------HHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECC
T ss_pred             cccCCCcceeCCCCCCcchh-CCHHHHHHHHH-------hcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCC
Confidence            33455778999  7899999 99999999999       8999999999  88999999999999999999999999999


Q ss_pred             --CCCcccCChhHHHHHH-hhh-cCCCCccC--CCCCCccccHHHHHHHHHHHHHHHHHHhHhhcCCCccCCCCCCCCCC
Q psy4796          97 --HCDHCFTQKVVLQRHL-LTH-TGEKPFAC--HLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISS  170 (274)
Q Consensus        97 --~C~~~f~~~~~l~~H~-~~h-~~~~~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~  170 (274)
                        .|++.|.+...|..|+ +.| .++++|.|  +.|++.|.+...|..|++.                            
T Consensus        77 ~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~----------------------------  128 (190)
T 1tf6_A           77 SDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFS----------------------------  128 (190)
T ss_dssp             SSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGG----------------------------
T ss_pred             CCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHH----------------------------
Confidence              8999999999999999 566 46788999  8899999999999888654                            


Q ss_pred             ChhhhhhhccCCCCCcccCCCccccCC--CCccccCHHHHHHHHhhccCCCCcccCc---CccccCCchhHHHHHhhhCC
Q psy4796         171 DMSEIIEHCLVCPNATRTDKKKFVCFA--CPYATQYACYIKTHVMTHTGDKPFACSY---CDYTCNQSSNLQTHLRIHKT  245 (274)
Q Consensus       171 ~~~~l~~h~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~---C~~~f~~~~~l~~H~~~h~~  245 (274)
                                      |.++++|.|+.  |++.|.....|..|+++|++   |.|..   |++.|.....|..|+++|++
T Consensus       129 ----------------H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~---~~C~~~~~C~~~f~~~~~l~~H~~~h~~  189 (190)
T 1tf6_A          129 ----------------HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLYLKHVAECHQ  189 (190)
T ss_dssp             ----------------GSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS---CCCCSTTTCCCCCSCHHHHHHHHTTCC-
T ss_pred             ----------------hCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC---CcCCCCCcCCCccccHHHHHHHHHhhcC
Confidence                            45667789977  99999999999999999988   88988   99999999999999999876


Q ss_pred             C
Q psy4796         246 E  246 (274)
Q Consensus       246 ~  246 (274)
                      +
T Consensus       190 e  190 (190)
T 1tf6_A          190 D  190 (190)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.96  E-value=2.7e-29  Score=183.51  Aligned_cols=88  Identities=31%  Similarity=0.583  Sum_probs=82.0

Q ss_pred             cccCCCccccCC--CCccccCHHHHHHHHhhccCCCCcccCc--CccccCCchhHHHHH-hhhCCCCceecCC--CCccC
Q psy4796         186 TRTDKKKFVCFA--CPYATQYACYIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHL-RIHKTEREYACGK--CAYRT  258 (274)
Q Consensus       186 ~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~-~~h~~~~~~~C~~--C~~~f  258 (274)
                      .|.+.++|.|+.  |++.|.....|..|++.|+++++|.|++  |++.|.+...|.+|+ ++|.++++|.|++  |++.|
T Consensus        61 ~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f  140 (155)
T 2gli_A           61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRY  140 (155)
T ss_dssp             HHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEE
T ss_pred             hcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCcccc
Confidence            345567789975  9999999999999999999999999998  999999999999999 7899999999998  99999


Q ss_pred             CChhHHHHHHhhhcC
Q psy4796         259 AALPDLKLHLKNMHL  273 (274)
Q Consensus       259 ~~~~~l~~H~~~~H~  273 (274)
                      .+.+.|.+|++.|||
T Consensus       141 ~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          141 TDPSSLRKHVKTVHG  155 (155)
T ss_dssp             SSHHHHHHHHHHSCC
T ss_pred             CCHHHHHHHHHhhcC
Confidence            999999999999997

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.94  E-value=3.2e-27  Score=172.43  Aligned_cols=139  Identities=27%  Similarity=0.449  Sum_probs=108.1

Q ss_pred             cceecccccccccChHHHHHHHh---hcCCCCcccCCC-----CCcccCChhHHHHHHhhhcCCCCccCCC--CCCcccc
Q psy4796          63 LQFLCLFCSYVATARIAIKNHLS---SHLGWKPYKCPH-----CDHCFTQKVVLQRHLLTHTGEKPFACHL--CPYRASR  132 (274)
Q Consensus        63 ~~~~C~~C~~~f~~~~~l~~H~~---~h~~~~~~~C~~-----C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~  132 (274)
                      .+|.|+.|++.|.+...|..|+.   .|.+.++|.|.+     |++.|.+...|..|++.|.++++|.|+.  |++.|.+
T Consensus         2 ~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~   81 (155)
T 2gli_A            2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSR   81 (155)
T ss_dssp             CBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSS
T ss_pred             CcCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccC
Confidence            35667777777777777777776   566667777664     3477888888888888888888888874  8888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhcCCCccCCCCCCCCCCChhhhhhhccCCCCCcccCCCccccCC--CCccccCHHHHHH
Q psy4796         133 KYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFA--CPYATQYACYIKT  210 (274)
Q Consensus       133 ~~~l~~H~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~  210 (274)
                      ...|..|++.                                            |.++++|.|+.  |++.|.....|..
T Consensus        82 ~~~l~~H~~~--------------------------------------------h~~~~~~~C~~~~C~~~f~~~~~L~~  117 (155)
T 2gli_A           82 LENLKTHLRS--------------------------------------------HTGEKPYMCEHEGCSKAFSNASDRAK  117 (155)
T ss_dssp             HHHHHHHHHH--------------------------------------------TTTCCCEECCSTTCCCEESSSSTTHH
T ss_pred             HHHHHHHHHH--------------------------------------------cCCCCCeeCCCCCCCCccCCHHHHHH
Confidence            7777777654                                            34556788887  8888888888899


Q ss_pred             HH-hhccCCCCcccCc--CccccCCchhHHHHHhhhCC
Q psy4796         211 HV-MTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKT  245 (274)
Q Consensus       211 H~-~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~  245 (274)
                      |+ +.|+++++|.|.+  |++.|.....|..|+++|+|
T Consensus       118 H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          118 HQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             HHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             HHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            98 7888899999988  99999999999999988764

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.92  E-value=2e-24  Score=151.48  Aligned_cols=112  Identities=32%  Similarity=0.599  Sum_probs=67.1

Q ss_pred             CCCcccCCCCCcccCChhHHHHHHhhhcCCCCccCCCCCCccccHHHHHHHHHHHHHHHHHHhHhhcCCCccCCCCCCCC
Q psy4796          89 GWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEPI  168 (274)
Q Consensus        89 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~c~~c~~~~  168 (274)
                      ++++|.|..|++.|.+...|..|++.|.++++|.|+.|++.|.+...|..|+..                          
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~--------------------------   57 (124)
T 2dlq_A            4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEAR--------------------------   57 (124)
T ss_dssp             CCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHH--------------------------
T ss_pred             CCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhh--------------------------
Confidence            455677777777777777777777777666667777777777666666666543                          


Q ss_pred             CCChhhhhhhccCCCCCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHh
Q psy4796         169 SSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLR  241 (274)
Q Consensus       169 ~~~~~~l~~h~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  241 (274)
                                     ...+.+.++|.|+.|++.|.....|..|++.|+++++|.|.+|++.|.....|.+|++
T Consensus        58 ---------------~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  115 (124)
T 2dlq_A           58 ---------------NCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMI  115 (124)
T ss_dssp             ---------------CCCCSCCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHH
T ss_pred             ---------------hhcCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHH
Confidence                           1112333445555555555555555555555555555555555555555555555554

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.92  E-value=7.1e-25  Score=153.80  Aligned_cols=114  Identities=24%  Similarity=0.427  Sum_probs=104.7

Q ss_pred             hcCCCccCCCCCCCCCCChhhhhhhccCCCCCcccCCCccccCCCCccccCHHHHHHHHhh---ccCCCCcccCcCcccc
Q psy4796         154 ASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMT---HTGDKPFACSYCDYTC  230 (274)
Q Consensus       154 ~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~---h~~~~~~~C~~C~~~f  230 (274)
                      .+..+|.|+.|++.|.. ...|..|     ...|.++++|.|+.|++.|.....|..|+..   +.++++|.|.+|++.|
T Consensus         3 ~~~~~~~C~~C~~~f~~-~~~l~~H-----~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f   76 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLS-KYYLKVH-----NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETF   76 (124)
T ss_dssp             CCCSSCCCTTTCCCCSS-HHHHHHH-----HHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEE
T ss_pred             CCCCCCCCCCCCCcCCC-HHHHHHH-----HHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCcc
Confidence            45677888888888888 8888888     7788889999999999999999999999985   5788999999999999


Q ss_pred             CCchhHHHHHhhhCCCCceecCCCCccCCChhHHHHHHhhhcC
Q psy4796         231 NQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       231 ~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  273 (274)
                      .....|..|+++|.++++|.|++|++.|.+...|.+|++.+|+
T Consensus        77 ~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  119 (124)
T 2dlq_A           77 RRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS  119 (124)
T ss_dssp             SSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSS
T ss_pred             CCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999999999997775

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.91  E-value=1.4e-24  Score=151.14  Aligned_cols=112  Identities=27%  Similarity=0.492  Sum_probs=103.0

Q ss_pred             hcCCCccCCC--CCCCCCCChhhhhhhccCCCCCcccCCCccccC--CCCccccCHHHHHHHHhhccCCCCcccCcCccc
Q psy4796         154 ASQPRRKCVH--CSEPISSDMSEIIEHCLVCPNATRTDKKKFVCF--ACPYATQYACYIKTHVMTHTGDKPFACSYCDYT  229 (274)
Q Consensus       154 ~~~~~~~c~~--c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~  229 (274)
                      .+.++|.|..  |++.|.. ...|..|     ...|.+.++|.|+  .|++.|.....|..|++.|+++++|.|.+|++.
T Consensus         2 ~~~~~~~C~~~~C~~~f~~-~~~l~~H-----~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   75 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFK-LSHLQMH-----SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRK   75 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSC-HHHHHHH-----HHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCE
T ss_pred             CCCeeeeCCCCCCcchhCC-HHHHHHH-----HHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCch
Confidence            3567788876  8888888 7888888     6778889999999  799999999999999999999999999999999


Q ss_pred             cCCchhHHHHHhhhCCCCceec--CCCCccCCChhHHHHHHhhh
Q psy4796         230 CNQSSNLQTHLRIHKTEREYAC--GKCAYRTAALPDLKLHLKNM  271 (274)
Q Consensus       230 f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~~  271 (274)
                      |.....|.+|+++|.++++|.|  ++|++.|.+...|.+|++.|
T Consensus        76 f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           76 FSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             ESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             hCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            9999999999999999999999  89999999999999999875

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.90  E-value=2e-24  Score=151.51  Aligned_cols=112  Identities=30%  Similarity=0.550  Sum_probs=98.4

Q ss_pred             CCCccCC--CCCCCCCCChhhhhhhccCCCCCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCc--CccccC
Q psy4796         156 QPRRKCV--HCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSY--CDYTCN  231 (274)
Q Consensus       156 ~~~~~c~--~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~  231 (274)
                      .++|.|+  .|++.|.+ ...|..|     ...| +.++|.|+.|++.|.....|..|++.|+++++|.|..  |++.|.
T Consensus         3 ~~~~~C~~~~C~~~f~~-~~~l~~H-----~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~   75 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRD-NSAMRKH-----LHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFS   75 (124)
T ss_dssp             --CEECCSTTCCCEESS-HHHHHHH-----HGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEES
T ss_pred             CCcccCCCCCCcCccCC-HHHHHHH-----HHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccC
Confidence            4567777  77777777 7777777     5666 7788999999999999999999999999999999986  999999


Q ss_pred             CchhHHHHHhhhCCCCceecCC--CCccCCChhHHHHHHhhhcCC
Q psy4796         232 QSSNLQTHLRIHKTEREYACGK--CAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       232 ~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      ....|.+|+++|.++++|.|++  |++.|.+.+.|.+|++.|+++
T Consensus        76 ~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~  120 (124)
T 1ubd_C           76 LDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA  120 (124)
T ss_dssp             CHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC--
T ss_pred             CHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHccc
Confidence            9999999999999999999964  999999999999999999875

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.90  E-value=9.5e-25  Score=153.96  Aligned_cols=102  Identities=18%  Similarity=0.367  Sum_probs=63.7

Q ss_pred             hcCCCccCCCCCCCCCCChhhhhhhccCCCCCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCc
Q psy4796         154 ASQPRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQS  233 (274)
Q Consensus       154 ~~~~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  233 (274)
                      .|.++|.|++|++.|.. ...|..|     +..|.++++|.|+.|++.|.....|..|+++|++++||.|++|++.|...
T Consensus        18 ~Gek~y~C~~C~k~F~~-~~~L~~H-----~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~   91 (133)
T 2lt7_A           18 DGRVYYICIVCKRSYVC-LTSLRRH-----FNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINY   91 (133)
T ss_dssp             TTEEEEEETTTCCEESC-HHHHHHH-----HHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSH
T ss_pred             CCCcCeECCCCCCCcCC-HHHHHHH-----HHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCH
Confidence            34556666666666666 6666666     55566666666666666666666666666666666666666666666666


Q ss_pred             hhHHHHHhhhCCCC------ceecCCCCccCCCh
Q psy4796         234 SNLQTHLRIHKTER------EYACGKCAYRTAAL  261 (274)
Q Consensus       234 ~~l~~H~~~h~~~~------~~~C~~C~~~f~~~  261 (274)
                      ..|..|++.|++++      +|.|.+|++.|...
T Consensus        92 ~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A           92 QFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             HHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCC
T ss_pred             HHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhc
Confidence            66666666655432      36666666665543

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.90  E-value=1.3e-23  Score=153.28  Aligned_cols=65  Identities=32%  Similarity=0.622  Sum_probs=48.3

Q ss_pred             cCCCccccCC--CCccccCHHHHHHHHhhccCCCCcccCc--CccccCCchhHHHHHhhhCCCCceecC
Q psy4796         188 TDKKKFVCFA--CPYATQYACYIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYACG  252 (274)
Q Consensus       188 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (274)
                      .+.++|.|..  |++.|.....|..|+++|+++++|.|.+  |++.|.....|.+|+++|+++++|.|+
T Consensus        86 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A           86 TGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             HCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             CCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            3445677766  7777777777777777777777777775  777777777777777777777777774

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.90  E-value=9.7e-25  Score=153.92  Aligned_cols=86  Identities=21%  Similarity=0.551  Sum_probs=79.5

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCCCcccCChhHHHHHHhhhcCCCCccCCCCCCccccHHHHH
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYIT  137 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~  137 (274)
                      +|.|+++|.|++|++.|.....|..|++.|+++++|.|..|++.|.+...|..|+++|.++++|.|+.|++.|.+...|.
T Consensus        16 ~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~   95 (133)
T 2lt7_A           16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMS   95 (133)
T ss_dssp             EETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHH
T ss_pred             ecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHHHH
Confidence            78889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy4796         138 AHLNSL  143 (274)
Q Consensus       138 ~H~~~~  143 (274)
                      .|++.+
T Consensus        96 ~H~~~h  101 (133)
T 2lt7_A           96 SHIKSV  101 (133)
T ss_dssp             HHHHHH
T ss_pred             HHhHHh
Confidence            998874

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.90  E-value=1.2e-23  Score=146.46  Aligned_cols=111  Identities=27%  Similarity=0.511  Sum_probs=105.5

Q ss_pred             CCCCCeeecc--ccCCcchhhHHHHHhhhccccccccccCCcceecc--cccccccChHHHHHHHhhcCCCCcccCCCCC
Q psy4796          24 PPPADVTCLH--CSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCL--FCSYVATARIAIKNHLSSHLGWKPYKCPHCD   99 (274)
Q Consensus        24 ~~~~~~~C~~--C~~~f~~~~~~l~~H~~~~~~~~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   99 (274)
                      .++++|.|..  |++.| .+...|..|++       .|.+.++|.|+  .|++.|.....|..|++.|.++++|.|..|+
T Consensus         2 ~~~~~~~C~~~~C~~~f-~~~~~l~~H~~-------~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   73 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRY-FKLSHLQMHSR-------KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ   73 (119)
T ss_dssp             CSSCCBCCCSTTSCCCB-SCHHHHHHHHH-------HHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTC
T ss_pred             CCCeeeeCCCCCCcchh-CCHHHHHHHHH-------hhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccC
Confidence            3567899997  99999 99999999999       89999999999  7999999999999999999999999999999


Q ss_pred             cccCChhHHHHHHhhhcCCCCccC--CCCCCccccHHHHHHHHHH
Q psy4796         100 HCFTQKVVLQRHLLTHTGEKPFAC--HLCPYRASRKYYITAHLNS  142 (274)
Q Consensus       100 ~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~  142 (274)
                      +.|.+...|..|++.|.++++|.|  +.|++.|.+...|..|+++
T Consensus        74 ~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~  118 (119)
T 2jp9_A           74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM  118 (119)
T ss_dssp             CEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHT
T ss_pred             chhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhc
Confidence            999999999999999999999999  8999999999999999875

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.89  E-value=2.2e-23  Score=146.13  Aligned_cols=115  Identities=29%  Similarity=0.574  Sum_probs=83.3

Q ss_pred             CCcccCC--CCCcccCChhHHHHHHhhhcCCCCccCCCCCCccccHHHHHHHHHHHHHHHHHHhHhhcCCCccCCCCCCC
Q psy4796          90 WKPYKCP--HCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCVHCSEP  167 (274)
Q Consensus        90 ~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~c~~c~~~  167 (274)
                      .++|.|+  .|++.|.+...|..|++.| +.++|.|+.|++.|.+...|..|++                          
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~--------------------------   55 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQL--------------------------   55 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGG--------------------------
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHH--------------------------
Confidence            3456676  6777777777777777666 6666777777777777666666643                          


Q ss_pred             CCCChhhhhhhccCCCCCcccCCCccccCC--CCccccCHHHHHHHHhhccCCCCcccC--cCccccCCchhHHHHHhhh
Q psy4796         168 ISSDMSEIIEHCLVCPNATRTDKKKFVCFA--CPYATQYACYIKTHVMTHTGDKPFACS--YCDYTCNQSSNLQTHLRIH  243 (274)
Q Consensus       168 ~~~~~~~l~~h~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h  243 (274)
                                        .|.++++|.|+.  |++.|.....|..|++.|+++++|.|+  .|++.|.+...|.+|+++|
T Consensus        56 ------------------~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  117 (124)
T 1ubd_C           56 ------------------VHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH  117 (124)
T ss_dssp             ------------------GTSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             ------------------HcCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHH
Confidence                              334556788865  888888888889998899999999995  5999999999999999999


Q ss_pred             CCCCce
Q psy4796         244 KTEREY  249 (274)
Q Consensus       244 ~~~~~~  249 (274)
                      ++++++
T Consensus       118 ~~~k~~  123 (124)
T 1ubd_C          118 AKAKNN  123 (124)
T ss_dssp             C-----
T ss_pred             cccccC
Confidence            988765

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.89  E-value=4.6e-23  Score=150.26  Aligned_cols=123  Identities=26%  Similarity=0.435  Sum_probs=110.5

Q ss_pred             CCCCCCeeeccccCCcchhhHHHHHhhhccccccccccCCcc--------eecccccccccChHHHHHHHhhcCCCCccc
Q psy4796          23 GPPPADVTCLHCSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQ--------FLCLFCSYVATARIAIKNHLSSHLGWKPYK   94 (274)
Q Consensus        23 ~~~~~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~   94 (274)
                      ......|.|..|++.| .+...|..|++.      .|.+..+        |.|.+|++.|.....|..|++.|.++++|.
T Consensus        20 ~~~~~~~~C~~C~~~f-~~~~~L~~H~~~------~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~   92 (155)
T 2rpc_A           20 DEAQLSRPKKSCDRTF-STMHELVTHVTM------EHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFP   92 (155)
T ss_dssp             CTTCCSSSCCCCCCCB-SSHHHHHHHHHT------TTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEE
T ss_pred             chhhcccccccCCccc-CCHHHHHHHHHh------hcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCccc
Confidence            3456679999999999 999999999983      2555543        789999999999999999999999999999


Q ss_pred             CCC--CCcccCChhHHHHHHhhhcCCCCccCCC--CCCccccHHHHHHHHHHHHHHHHHHhHhhcCCCccCC
Q psy4796          95 CPH--CDHCFTQKVVLQRHLLTHTGEKPFACHL--CPYRASRKYYITAHLNSLLSALLLQHFLASQPRRKCV  162 (274)
Q Consensus        95 C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~c~  162 (274)
                      |.+  |++.|.+...|..|++.|.++++|.|+.  |++.|.+...|..|++.        +  .+.++|.|.
T Consensus        93 C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~--------H--~~~k~~~c~  154 (155)
T 2rpc_A           93 CPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV--------H--TSDKSGPSS  154 (155)
T ss_dssp             CSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTT--------T--TSCCCSCSC
T ss_pred             CCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHH--------h--cCCCCCCCC
Confidence            998  9999999999999999999999999997  99999999999999987        3  677788774

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.87  E-value=5.5e-22  Score=132.52  Aligned_cols=88  Identities=34%  Similarity=0.624  Sum_probs=84.4

Q ss_pred             ccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCChhHHHH
Q psy4796         187 RTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKL  266 (274)
Q Consensus       187 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~  266 (274)
                      ..++++|.|..|++.|.....|..|++.|+++++|.|..|++.|.....|.+|+++|.++++|.|++|++.|.+...|..
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   82 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTV   82 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHH
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCC
Q psy4796         267 HLKNMHLY  274 (274)
Q Consensus       267 H~~~~H~~  274 (274)
                      |++.||+|
T Consensus        83 H~~~h~~~   90 (96)
T 2dmd_A           83 HLRSHTGD   90 (96)
T ss_dssp             HHTTCCSC
T ss_pred             HHHHhcCC
Confidence            99999986

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.85  E-value=3e-21  Score=131.37  Aligned_cols=90  Identities=23%  Similarity=0.466  Sum_probs=84.7

Q ss_pred             CcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCChhHH
Q psy4796         185 ATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDL  264 (274)
Q Consensus       185 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l  264 (274)
                      .....+++|.|..|++.|.....|..|++.|+++++|.|.+|++.|.....|..|+++|.++++|.|++|++.|.+...|
T Consensus        10 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L   89 (106)
T 2ee8_A           10 LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTL   89 (106)
T ss_dssp             CCCCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHH
T ss_pred             CCcCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHH
Confidence            34456778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcCC
Q psy4796         265 KLHLKNMHLY  274 (274)
Q Consensus       265 ~~H~~~~H~~  274 (274)
                      .+|++.|+++
T Consensus        90 ~~H~~~H~~~   99 (106)
T 2ee8_A           90 AVHKTLHMQT   99 (106)
T ss_dssp             HHHHHHTTSC
T ss_pred             HHHHHHhCCC
Confidence            9999999875

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.85  E-value=1e-21  Score=127.25  Aligned_cols=82  Identities=24%  Similarity=0.528  Sum_probs=79.2

Q ss_pred             ccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCChhHHHHHHhhh
Q psy4796         192 KFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKNM  271 (274)
Q Consensus       192 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  271 (274)
                      +|.|+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.|.++++|.|++|++.|.+...|.+|++.|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC
Q psy4796         272 HL  273 (274)
Q Consensus       272 H~  273 (274)
                      +|
T Consensus        81 ~g   82 (82)
T 2kmk_A           81 TG   82 (82)
T ss_dssp             C-
T ss_pred             CC
Confidence            86

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.85  E-value=1.2e-21  Score=129.15  Aligned_cols=85  Identities=29%  Similarity=0.557  Sum_probs=80.9

Q ss_pred             CCccccC--CCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCChhHHHHH
Q psy4796         190 KKKFVCF--ACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLH  267 (274)
Q Consensus       190 ~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H  267 (274)
                      +++|.|+  .|++.|.....|..|++.|+++++|.|..|++.|.....|..|+++|.++++|.|++|++.|.+...|.+|
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   81 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH   81 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHH
Confidence            5689998  69999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcCC
Q psy4796         268 LKNMHLY  274 (274)
Q Consensus       268 ~~~~H~~  274 (274)
                      ++.|++|
T Consensus        82 ~~~H~~~   88 (90)
T 1a1h_A           82 TKIHLRQ   88 (90)
T ss_dssp             HGGGGC-
T ss_pred             HHHhccc
Confidence            9999986

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.84  E-value=5.8e-21  Score=130.84  Aligned_cols=88  Identities=22%  Similarity=0.455  Sum_probs=84.7

Q ss_pred             CcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCChhHH
Q psy4796         185 ATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDL  264 (274)
Q Consensus       185 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l  264 (274)
                      ..|.++++|.| .|++.|.....|..|++.|+++++|.|.+|++.|.....|..|+++|.++++|.|++|++.|.+...|
T Consensus         3 ~~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   81 (110)
T 2csh_A            3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF   81 (110)
T ss_dssp             CCCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHH
T ss_pred             CCCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHH
Confidence            46788999999 99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcC
Q psy4796         265 KLHLKNMHL  273 (274)
Q Consensus       265 ~~H~~~~H~  273 (274)
                      .+|++.+|+
T Consensus        82 ~~H~~~~~~   90 (110)
T 2csh_A           82 HRHVTSCTK   90 (110)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHccc
Confidence            999999875

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=9e-21  Score=126.30  Aligned_cols=86  Identities=22%  Similarity=0.541  Sum_probs=80.8

Q ss_pred             cCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCC--CceecCCCCccCCChhHHH
Q psy4796         188 TDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTE--REYACGKCAYRTAALPDLK  265 (274)
Q Consensus       188 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~l~  265 (274)
                      .++++|.|..|++.|.....|..|++.|+++++|.|.+|++.|.....|..|++.|+++  ++|.|++|++.|.+...|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~   82 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLN   82 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHH
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999987  8999999999999999999


Q ss_pred             HHHhhhcC
Q psy4796         266 LHLKNMHL  273 (274)
Q Consensus       266 ~H~~~~H~  273 (274)
                      .|++..|.
T Consensus        83 ~H~~~~H~   90 (95)
T 2yt9_A           83 GHIKQVHS   90 (95)
T ss_dssp             HHHHHTSC
T ss_pred             HHHHHhcC
Confidence            99975553

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.83  E-value=2.8e-20  Score=126.54  Aligned_cols=95  Identities=20%  Similarity=0.379  Sum_probs=87.8

Q ss_pred             CCCCCCCCeeeccccCCcchhhHHHHHhhhccccccccccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCCCc
Q psy4796          21 SPGPPPADVTCLHCSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDH  100 (274)
Q Consensus        21 ~~~~~~~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~  100 (274)
                      ......++|.|..|++.| .+...|..|++       .|.++++|.|.+|++.|.....|..|++.|.++++|.|.+|++
T Consensus        10 ~~~~~~~~~~C~~C~~~f-~~~~~l~~H~~-------~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   81 (106)
T 2ee8_A           10 LPSKTKKEFICKFCGRHF-TKSYNLLIHER-------THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGK   81 (106)
T ss_dssp             CCCCCCCCCBCSSSCCBC-SSHHHHHHHHH-------HHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCC
T ss_pred             CCcCCCcCeECCCCCCcc-CCHHHHHHHHH-------HcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCC
Confidence            344566789999999999 99999999999       8999999999999999999999999999999999999999999


Q ss_pred             ccCChhHHHHHHhhhcCCCCccC
Q psy4796         101 CFTQKVVLQRHLLTHTGEKPFAC  123 (274)
Q Consensus       101 ~f~~~~~l~~H~~~h~~~~~~~C  123 (274)
                      .|.+...|..|++.|.++++|..
T Consensus        82 ~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           82 GFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             CCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             cccCHHHHHHHHHHhCCCCCCcC
Confidence            99999999999999999988764

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=2.4e-21  Score=133.82  Aligned_cols=98  Identities=18%  Similarity=0.196  Sum_probs=89.7

Q ss_pred             hhhhhhhccCCCCCcccCCCccccCCCCccccCHHHHHHHHhh--ccCCCCcc-cCcCcccc--CCchhHHHHHhhhCCC
Q psy4796         172 MSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMT--HTGDKPFA-CSYCDYTC--NQSSNLQTHLRIHKTE  246 (274)
Q Consensus       172 ~~~l~~h~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~-C~~C~~~f--~~~~~l~~H~~~h~~~  246 (274)
                      ...|..|     ...|.++++|.|..|++.|.....|..|++.  |.+.+++. |.+|++.|  .....|..|+++|.++
T Consensus         4 ~~~l~~H-----~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~   78 (115)
T 2dmi_A            4 GSSGKLY-----GSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ   78 (115)
T ss_dssp             CCCCCCC-----CCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCC
T ss_pred             chhhhhh-----eeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCC
Confidence            4566677     8889999999999999999999999999998  77777655 99999999  8999999999999999


Q ss_pred             CceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         247 REYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       247 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      ++|.|++|++.|.....|.+|++.+|.+
T Consensus        79 ~~~~C~~C~k~f~~~~~L~~H~~~hh~~  106 (115)
T 2dmi_A           79 KVLKCMYCGHSFESLQDLSVHMIKTKHY  106 (115)
T ss_dssp             SSCBCSSSCCBCSSHHHHHHHHHHTTTT
T ss_pred             cceECCCCCCccCCHHHHHHHHHHhCCc
Confidence            9999999999999999999999998863

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.80  E-value=3.5e-20  Score=110.96  Aligned_cols=57  Identities=28%  Similarity=0.529  Sum_probs=38.2

Q ss_pred             CCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         218 DKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       218 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      ||||.|.+||+.|.....|.+|+++|++++||.|++|++.|...+.|.+|++.|.||
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCC
Confidence            566666666666666666666666666666666666666666666666666666654

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.80  E-value=2e-19  Score=119.92  Aligned_cols=89  Identities=24%  Similarity=0.442  Sum_probs=74.8

Q ss_pred             CCCCCeeeccccCCcchhhHHHHHhhhccccccccccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCCCcccC
Q psy4796          24 PPPADVTCLHCSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFT  103 (274)
Q Consensus        24 ~~~~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~  103 (274)
                      .+.++|.|..|++.| .+...|..|++       .|.+.++|.|++|++.|.....|..|++.|.++++|.|.+|++.|.
T Consensus         4 ~~~~~~~C~~C~~~f-~~~~~l~~H~~-------~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   75 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCF-SRKDKLKTHMR-------CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASR   75 (96)
T ss_dssp             CCCCCCCBTTTTBCC-CCHHHHHHHGG-------GCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEES
T ss_pred             CCCcCeECCCCCCcc-CCHHHHHHHHH-------hcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccC
Confidence            345678888888888 88888888888       7888888888888888888888888888888888888888888888


Q ss_pred             ChhHHHHHHhhhcCCCC
Q psy4796         104 QKVVLQRHLLTHTGEKP  120 (274)
Q Consensus       104 ~~~~l~~H~~~h~~~~~  120 (274)
                      +...|..|++.|+++++
T Consensus        76 ~~~~l~~H~~~h~~~~~   92 (96)
T 2dmd_A           76 NSSQLTVHLRSHTGDSG   92 (96)
T ss_dssp             SHHHHHHHHTTCCSCCC
T ss_pred             CHHHHHHHHHHhcCCCC
Confidence            88888888888877654

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.80  E-value=2.8e-19  Score=120.17  Aligned_cols=88  Identities=28%  Similarity=0.584  Sum_probs=82.5

Q ss_pred             cccCCCccccCC--CCccccCHHHHHHHHhhccCCCCcccC--cCccccCCchhHHHHHhhhCCCCceecCCCCccCCCh
Q psy4796         186 TRTDKKKFVCFA--CPYATQYACYIKTHVMTHTGDKPFACS--YCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAAL  261 (274)
Q Consensus       186 ~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  261 (274)
                      .....++|.|..  |++.|.....|..|++.|+++++|.|.  .|++.|.....|.+|+++|.++++|.|++|++.|...
T Consensus         9 ~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~   88 (100)
T 2ebt_A            9 DLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRS   88 (100)
T ss_dssp             CCCSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSH
T ss_pred             ccccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCH
Confidence            345667899996  999999999999999999999999996  6999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhcC
Q psy4796         262 PDLKLHLKNMHL  273 (274)
Q Consensus       262 ~~l~~H~~~~H~  273 (274)
                      ..|.+|++.|++
T Consensus        89 ~~l~~H~~~H~~  100 (100)
T 2ebt_A           89 DHLALHMKRHQN  100 (100)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHhCC
Confidence            999999999875

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.79  E-value=1e-19  Score=123.92  Aligned_cols=86  Identities=15%  Similarity=0.226  Sum_probs=78.6

Q ss_pred             CCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCChhH
Q psy4796         184 NATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPD  263 (274)
Q Consensus       184 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~  263 (274)
                      ...+.++++|.|..|++.|.....|..|++.|.  ++|.|.+|++.|.....|..|+. |.++++|.|.+|++.|.....
T Consensus         8 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~--~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~   84 (107)
T 1wjp_A            8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFS   84 (107)
T ss_dssp             CCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH--HSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHH
T ss_pred             CcccCCCcCeECCCCCCccCCHHHHHHHHHHCC--CCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHH
Confidence            567788899999999999999999999999984  68999999999999999999996 999999999999999999999


Q ss_pred             HHHHHhhhc
Q psy4796         264 LKLHLKNMH  272 (274)
Q Consensus       264 l~~H~~~~H  272 (274)
                      |.+|++.+|
T Consensus        85 L~~H~~~~H   93 (107)
T 1wjp_A           85 IWRHQVEVH   93 (107)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHHHc
Confidence            999998444

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.79  E-value=2.3e-19  Score=117.89  Aligned_cols=82  Identities=30%  Similarity=0.601  Sum_probs=78.4

Q ss_pred             CCccccCC--CCccccCHHHHHHHHhhccCCCCcccC--cCccccCCchhHHHHHhhhCCCCceecCCCCccCCChhHHH
Q psy4796         190 KKKFVCFA--CPYATQYACYIKTHVMTHTGDKPFACS--YCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLK  265 (274)
Q Consensus       190 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~  265 (274)
                      ..+|.|+.  |++.|.....|..|++.|+++++|.|+  .|++.|.....|..|+++|.++++|.|++|++.|.+.+.|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA   82 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHH
Confidence            45799999  999999999999999999999999997  69999999999999999999999999999999999999999


Q ss_pred             HHHhhh
Q psy4796         266 LHLKNM  271 (274)
Q Consensus       266 ~H~~~~  271 (274)
                      .|++.|
T Consensus        83 ~H~~~H   88 (89)
T 2wbs_A           83 LHMKRH   88 (89)
T ss_dssp             HHGGGG
T ss_pred             HHHHhh
Confidence            999886

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.78  E-value=1.5e-20  Score=123.34  Aligned_cols=83  Identities=25%  Similarity=0.361  Sum_probs=79.2

Q ss_pred             CCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCChhHHHHHHh
Q psy4796         190 KKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLK  269 (274)
Q Consensus       190 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  269 (274)
                      +++|.|+.|++.|.....|..|+++|+++++|.|..|++.|.....|.+|++.|++ .+|.|+.|++.|.....|..|++
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~~   79 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVA   79 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHHH
Confidence            36899999999999999999999999999999999999999999999999999885 78999999999999999999999


Q ss_pred             hhcC
Q psy4796         270 NMHL  273 (274)
Q Consensus       270 ~~H~  273 (274)
                      .+|+
T Consensus        80 ~~h~   83 (88)
T 1llm_C           80 RLKK   83 (88)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9885

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.77  E-value=3.2e-19  Score=117.46  Aligned_cols=86  Identities=23%  Similarity=0.452  Sum_probs=58.0

Q ss_pred             CCCeeec--cccCCcchhhHHHHHhhhccccccccccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCCCcccC
Q psy4796          26 PADVTCL--HCSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFT  103 (274)
Q Consensus        26 ~~~~~C~--~C~~~f~~~~~~l~~H~~~~~~~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~  103 (274)
                      +++|.|+  .|++.| .+...|..|++       .|.+.++|.|++|++.|.....|..|++.|+++++|.|..|++.|.
T Consensus         2 ~k~~~C~~~~C~~~f-~~~~~l~~H~~-------~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   73 (90)
T 1a1h_A            2 ERPYACPVESCDRRF-SQSGSLTRHIR-------IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA   73 (90)
T ss_dssp             -CCEECCSSSCCCEE-SSHHHHHHHHH-------HHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred             CCceECCCCCCCCcc-CCHHHHHHHHH-------HhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhC
Confidence            3567776  477777 77777777776       6666666777777777777777777777776666777777777777


Q ss_pred             ChhHHHHHHhhhcCCC
Q psy4796         104 QKVVLQRHLLTHTGEK  119 (274)
Q Consensus       104 ~~~~l~~H~~~h~~~~  119 (274)
                      +...|..|+++|++++
T Consensus        74 ~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           74 RSDERKRHTKIHLRQK   89 (90)
T ss_dssp             SHHHHHHHHGGGGC--
T ss_pred             CHHHHHHHHHHhcccC
Confidence            7777777777666543

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.77  E-value=3.2e-19  Score=115.33  Aligned_cols=78  Identities=31%  Similarity=0.609  Sum_probs=38.4

Q ss_pred             eecccccccccChHHHHHHHhhcCCCCcccCCCCCcccCChhHHHHHHhhhcCCCCccCCCCCCccccHHHHHHHHHH
Q psy4796          65 FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNS  142 (274)
Q Consensus        65 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  142 (274)
                      |.|.+|++.|.....|..|++.|.++++|.|..|++.|.+...|..|++.|.++++|.|+.|++.|.+...|..|++.
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   79 (82)
T 2kmk_A            2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRK   79 (82)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHH
T ss_pred             ccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHh
Confidence            444444444444444444444444444444555554454444454554444444445555555555555555544443

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.77  E-value=3.2e-18  Score=117.04  Aligned_cols=91  Identities=30%  Similarity=0.533  Sum_probs=81.5

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCCCcccCChhHHHHHHhhhcCCCCccCCCCCCccccHHHHH
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYIT  137 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~  137 (274)
                      .|+++++|.| .|++.|.....|..|++.|.+.++|.|.+|++.|.+...|..|++.|.++++|.|+.|++.|.....|.
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFH   82 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHH
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHH
Confidence            6788889999 899999999999999999999899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy4796         138 AHLNSLLSALLL  149 (274)
Q Consensus       138 ~H~~~~~~~~~~  149 (274)
                      .|++.++.....
T Consensus        83 ~H~~~~~~~~~~   94 (110)
T 2csh_A           83 RHVTSCTKSYEA   94 (110)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHccccccc
Confidence            999887765443

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.76  E-value=8.9e-19  Score=119.20  Aligned_cols=92  Identities=18%  Similarity=0.324  Sum_probs=81.6

Q ss_pred             CCCCCCCeeeccccCCcchhhHHHHHhhhccccccccccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCCCcc
Q psy4796          22 PGPPPADVTCLHCSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHC  101 (274)
Q Consensus        22 ~~~~~~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~  101 (274)
                      ...++++|.|..|++.| .....|..|++       .|  .++|.|.+|++.|.....|..|+. |.++++|.|.+|++.
T Consensus        10 ~h~~~~~~~C~~C~~~f-~~~~~l~~H~~-------~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~   78 (107)
T 1wjp_A           10 PVENKEVYQCRLCNAKL-SSLLEQGSHER-------LC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRT   78 (107)
T ss_dssp             CCCCCCCCBCTTTCCBC-SSHHHHHHHHH-------HH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEE
T ss_pred             ccCCCcCeECCCCCCcc-CCHHHHHHHHH-------HC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccch
Confidence            34567789999999999 99999999998       66  368999999999999999999996 999999999999999


Q ss_pred             cCChhHHHHHHh-hhcCCCCccCC
Q psy4796         102 FTQKVVLQRHLL-THTGEKPFACH  124 (274)
Q Consensus       102 f~~~~~l~~H~~-~h~~~~~~~C~  124 (274)
                      |.+...|..|++ .|.++++|.+.
T Consensus        79 f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           79 FKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             CSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             hCCHHHHHHHHHHHcCCCCCCCCC
Confidence            999999999997 88888888774

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.76  E-value=5.5e-19  Score=105.74  Aligned_cols=58  Identities=24%  Similarity=0.523  Sum_probs=55.7

Q ss_pred             CCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCC
Q psy4796         190 KKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTER  247 (274)
Q Consensus       190 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  247 (274)
                      ++||.|.+||+.|.....|..|+++|++++||.|.+||+.|...+.|.+|+++|++++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            6899999999999999999999999999999999999999999999999999999875

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=2.2e-18  Score=114.58  Aligned_cols=85  Identities=26%  Similarity=0.475  Sum_probs=56.4

Q ss_pred             CCCCeeeccccCCcchhhHHHHHhhhccccccccccCCcceecccccccccChHHHHHHHhhcCCC--CcccCCCCCccc
Q psy4796          25 PPADVTCLHCSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGW--KPYKCPHCDHCF  102 (274)
Q Consensus        25 ~~~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f  102 (274)
                      +.++|.|..|++.| .+...|..|++       .|.++++|.|++|++.|.....|..|++.|++.  ++|.|..|++.|
T Consensus         4 ~~~~~~C~~C~~~f-~~~~~l~~H~~-------~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f   75 (95)
T 2yt9_A            4 GSSGVACEICGKIF-RDVYHLNRHKL-------SHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGF   75 (95)
T ss_dssp             CCSCEECSSSCCEE-SSSHHHHHHHH-------HSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCB
T ss_pred             CCCCeECCCCCCcc-CChHHHHHHHH-------hcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchh
Confidence            34556777777777 66666777766       666666667777777776666677776666665  666666666666


Q ss_pred             CChhHHHHHHh-hhcC
Q psy4796         103 TQKVVLQRHLL-THTG  117 (274)
Q Consensus       103 ~~~~~l~~H~~-~h~~  117 (274)
                      .+...|..|++ .|.+
T Consensus        76 ~~~~~L~~H~~~~H~~   91 (95)
T 2yt9_A           76 SRPDHLNGHIKQVHSG   91 (95)
T ss_dssp             SSHHHHHHHHHHTSCC
T ss_pred             CCHHHHHHHHHHhcCC
Confidence            66666666664 4443

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.75  E-value=1.4e-18  Score=113.04  Aligned_cols=78  Identities=28%  Similarity=0.577  Sum_probs=75.3

Q ss_pred             cccc--CCCCccccCHHHHHHHHhhccCCCCcccCc--CccccCCchhHHHHHhhhCCCCceecCC---CCccCCChhHH
Q psy4796         192 KFVC--FACPYATQYACYIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYACGK---CAYRTAALPDL  264 (274)
Q Consensus       192 ~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~---C~~~f~~~~~l  264 (274)
                      +|.|  +.|++.|.....|..|+++|+++++|.|++  |++.|.....|.+|+++|++   |.|+.   |++.|.+.+.|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l   77 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLY   77 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHH
Confidence            5889  999999999999999999999999999988  99999999999999999998   99999   99999999999


Q ss_pred             HHHHhhhc
Q psy4796         265 KLHLKNMH  272 (274)
Q Consensus       265 ~~H~~~~H  272 (274)
                      .+|++.||
T Consensus        78 ~~H~~~hh   85 (85)
T 2j7j_A           78 LKHVAECH   85 (85)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhcC
Confidence            99999987

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.74  E-value=9.5e-18  Score=112.61  Aligned_cols=90  Identities=19%  Similarity=0.356  Sum_probs=77.4

Q ss_pred             CCCCCCCCCeeecc--ccCCcchhhHHHHHhhhccccccccccCCcceecc--cccccccChHHHHHHHhhcCCCCcccC
Q psy4796          20 ASPGPPPADVTCLH--CSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCL--FCSYVATARIAIKNHLSSHLGWKPYKC   95 (274)
Q Consensus        20 ~~~~~~~~~~~C~~--C~~~f~~~~~~l~~H~~~~~~~~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C   95 (274)
                      .+.....++|.|..  |++.| .....|..|++       .|.++++|.|+  .|++.|.....|..|++.|+++++|.|
T Consensus         7 ~~~~~~~~~~~C~~~~C~~~f-~~~~~l~~H~~-------~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C   78 (100)
T 2ebt_A            7 GPDLEKRRIHYCDYPGCTKVY-TKSSHLKAHLR-------THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQC   78 (100)
T ss_dssp             CCCCCSCCCEECCSSSCCCEE-SCHHHHHHHHH-------HHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBC
T ss_pred             CcccccCcceEcCCCCCCCcc-cCHHHHHHHHH-------HhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeEC
Confidence            44556667899986  99999 99999999998       88888889996  599999999999999999998889999


Q ss_pred             CCCCcccCChhHHHHHHhhhcC
Q psy4796          96 PHCDHCFTQKVVLQRHLLTHTG  117 (274)
Q Consensus        96 ~~C~~~f~~~~~l~~H~~~h~~  117 (274)
                      ..|++.|.+...|..|++.|.+
T Consensus        79 ~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           79 GVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             SSSCCBCSSHHHHHHHHHHHCC
T ss_pred             CCCcCccCCHHHHHHHHHHhCC
Confidence            9999999999999999988753

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=1.1e-18  Score=120.45  Aligned_cols=95  Identities=14%  Similarity=0.143  Sum_probs=77.8

Q ss_pred             hHHHHHhhhccccccccccCCcceecccccccccChHHHHHHHhh--cCCCCcc-cCCCCCccc--CChhHHHHHHhhhc
Q psy4796          42 MKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSS--HLGWKPY-KCPHCDHCF--TQKVVLQRHLLTHT  116 (274)
Q Consensus        42 ~~~l~~H~~~~~~~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~-~C~~C~~~f--~~~~~l~~H~~~h~  116 (274)
                      ...|..|++       .|.++++|.|.+|++.|.....|..|++.  |.+.+++ .|..|++.|  .....|..|++.|.
T Consensus         4 ~~~l~~H~~-------~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~   76 (115)
T 2dmi_A            4 GSSGKLYGS-------IFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKED   76 (115)
T ss_dssp             CCCCCCCCC-------CCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCC
T ss_pred             chhhhhhee-------eeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccC
Confidence            345677887       78888888888888888888888888887  6666554 488888888  78888888888888


Q ss_pred             CCCCccCCCCCCccccHHHHHHHHHHH
Q psy4796         117 GEKPFACHLCPYRASRKYYITAHLNSL  143 (274)
Q Consensus       117 ~~~~~~C~~C~~~f~~~~~l~~H~~~~  143 (274)
                      ++++|.|+.|++.|.....|..|++.+
T Consensus        77 ~~~~~~C~~C~k~f~~~~~L~~H~~~h  103 (115)
T 2dmi_A           77 AQKVLKCMYCGHSFESLQDLSVHMIKT  103 (115)
T ss_dssp             CCSSCBCSSSCCBCSSHHHHHHHHHHT
T ss_pred             CCcceECCCCCCccCCHHHHHHHHHHh
Confidence            888888888888888888888888763

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=1.2e-17  Score=107.03  Aligned_cols=72  Identities=22%  Similarity=0.489  Sum_probs=67.5

Q ss_pred             cCCCccccCC--CCccccCHHHHHHHHh-hccCCCCcccCc--CccccCCchhHHHHHhhhCCCCceecCCCCccCC
Q psy4796         188 TDKKKFVCFA--CPYATQYACYIKTHVM-THTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTA  259 (274)
Q Consensus       188 ~~~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~  259 (274)
                      +++++|.|..  |++.|.....|..|++ .|.++++|.|.+  |++.|.....|.+|+++|+++++|.|++|++.|.
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            4567799986  9999999999999999 799999999999  9999999999999999999999999999999983

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.70  E-value=1.9e-18  Score=121.71  Aligned_cols=83  Identities=17%  Similarity=0.301  Sum_probs=73.1

Q ss_pred             CCCccccCCCCcccc------CHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCChh
Q psy4796         189 DKKKFVCFACPYATQ------YACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALP  262 (274)
Q Consensus       189 ~~~~~~C~~C~~~f~------~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~  262 (274)
                      ..+.+.|+.|+..|.      ....|..|+ .|++++||.|.+|++.|.....|..|+++|  +++|.|++|++.|...+
T Consensus        38 ~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~  114 (129)
T 2wbt_A           38 EQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTD  114 (129)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHH
T ss_pred             hhCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHH
Confidence            345577888777665      566677776 689999999999999999999999999999  89999999999999999


Q ss_pred             HHHHHHhhhcCC
Q psy4796         263 DLKLHLKNMHLY  274 (274)
Q Consensus       263 ~l~~H~~~~H~~  274 (274)
                      .|.+|++.||++
T Consensus       115 ~l~~H~~~h~~~  126 (129)
T 2wbt_A          115 SALDHVCKKHNI  126 (129)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHHCCc
Confidence            999999999985

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.69  E-value=3.2e-17  Score=107.55  Aligned_cols=81  Identities=25%  Similarity=0.499  Sum_probs=45.0

Q ss_pred             CCeeecc--ccCCcchhhHHHHHhhhccccccccccCCcceecc--cccccccChHHHHHHHhhcCCCCcccCCCCCccc
Q psy4796          27 ADVTCLH--CSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCL--FCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCF  102 (274)
Q Consensus        27 ~~~~C~~--C~~~f~~~~~~l~~H~~~~~~~~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f  102 (274)
                      ++|.|..  |++.| .....|..|++       .|.++++|.|+  .|++.|.....|..|++.|.++++|.|..|++.|
T Consensus         4 ~~~~C~~~~C~~~f-~~~~~l~~H~~-------~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   75 (89)
T 2wbs_A            4 ATHTCDYAGCGKTY-TKSSHLKAHLR-------THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAF   75 (89)
T ss_dssp             CCEECCSTTTCCEE-SSHHHHHHHHT-------TSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEE
T ss_pred             CCeeCCCCCCCCcC-CCHHHHHHHHH-------hcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCccc
Confidence            3455555  55555 55555555555       55555555554  3555555555555555555555555555555555


Q ss_pred             CChhHHHHHHhhh
Q psy4796         103 TQKVVLQRHLLTH  115 (274)
Q Consensus       103 ~~~~~l~~H~~~h  115 (274)
                      .+...|..|++.|
T Consensus        76 ~~~~~l~~H~~~H   88 (89)
T 2wbs_A           76 SRSDHLALHMKRH   88 (89)
T ss_dssp             SSHHHHHHHGGGG
T ss_pred             CCHHHHHHHHHhh
Confidence            5555555555544

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=8.8e-17  Score=102.37  Aligned_cols=68  Identities=25%  Similarity=0.489  Sum_probs=63.3

Q ss_pred             CCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceec
Q psy4796         184 NATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC  251 (274)
Q Consensus       184 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (274)
                      ...+.++++|.|+.|++.|.....|..|++.|+++++|.|.+|++.|.....|.+|+++|++++||.|
T Consensus        10 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           10 EWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             cCcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            34566788999999999999999999999999999999999999999999999999999999999988

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=8.9e-17  Score=104.66  Aligned_cols=75  Identities=16%  Similarity=0.264  Sum_probs=70.8

Q ss_pred             CCcccCCCccccCCCCccccCHHHHHHHHhhccCC----CCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccC
Q psy4796         184 NATRTDKKKFVCFACPYATQYACYIKTHVMTHTGD----KPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRT  258 (274)
Q Consensus       184 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~----~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f  258 (274)
                      +.+|.++++|.|..|++.|.....|..|++.|+..    ++|.|.+|++.|.....|..|+++|++++++.|..|+..|
T Consensus         7 ~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A            7 GRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             STTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCCCCC
T ss_pred             cceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCCCCC
Confidence            78899999999999999999999999999877765    7899999999999999999999999999999999999876

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=1e-17  Score=111.93  Aligned_cols=65  Identities=15%  Similarity=0.320  Sum_probs=35.8

Q ss_pred             CCcccCCCccccCCCCcccc-CHHHHHHHHhhccC-CCCcccCcCccccCCchhHHHHHhhhCCCCc
Q psy4796         184 NATRTDKKKFVCFACPYATQ-YACYIKTHVMTHTG-DKPFACSYCDYTCNQSSNLQTHLRIHKTERE  248 (274)
Q Consensus       184 ~~~~~~~~~~~C~~C~~~f~-~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  248 (274)
                      +..|.++++|.|..|++.|. ....|..|+++|++ +++|.|.+|++.|.....|.+|+++|+++++
T Consensus        16 ~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp   82 (98)
T 2gqj_A           16 QRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP   82 (98)
T ss_dssp             HHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCS
T ss_pred             HHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            44455555555555555555 55555555555555 5555555555555555555555555555554

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.67  E-value=7.6e-18  Score=110.28  Aligned_cols=81  Identities=21%  Similarity=0.341  Sum_probs=59.8

Q ss_pred             cceecccccccccChHHHHHHHhhcCCCCcccCCCCCcccCChhHHHHHHhhhcCCCCccCCCCCCccccHHHHHHHHHH
Q psy4796          63 LQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNS  142 (274)
Q Consensus        63 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  142 (274)
                      ++|.|.+|++.|.....|..|++.|.++++|.|..|++.|.+...|..|++.|++ .+|.|+.|++.|.....|..|++.
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~~~   80 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVAR   80 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHHHH
Confidence            4677777777777777777777777777777777777777777777777777663 567777777777777777777776


Q ss_pred             HH
Q psy4796         143 LL  144 (274)
Q Consensus       143 ~~  144 (274)
                      .+
T Consensus        81 ~h   82 (88)
T 1llm_C           81 LK   82 (88)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=8.1e-17  Score=101.11  Aligned_cols=62  Identities=29%  Similarity=0.498  Sum_probs=38.6

Q ss_pred             hhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         213 MTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       213 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      ++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|++.|.....|.+|++.|+++
T Consensus         7 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A            7 GIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             CTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             cccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            34555666666666666666666666666666666666666666666666666666666553

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=1.2e-16  Score=99.78  Aligned_cols=59  Identities=34%  Similarity=0.745  Sum_probs=30.7

Q ss_pred             ccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCChhHHHHHHhhhcC
Q psy4796         215 HTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       215 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  273 (274)
                      |+++++|.|.+|++.|.....|.+|+++|.++++|.|++|++.|.....|.+|++.||+
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~   62 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG   62 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhC
Confidence            34445555555555555555555555555555555555555555555555555555544

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.64  E-value=1.2e-16  Score=95.49  Aligned_cols=57  Identities=35%  Similarity=0.673  Sum_probs=46.4

Q ss_pred             CCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCChhHHHHHHhhhcC
Q psy4796         217 GDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       217 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  273 (274)
                      ++++|.|.+|++.|.....|..|+++|.++++|.|++|++.|.....|.+|++.||+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            357888888888888888888888888888889999999999888889999888885

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=2e-16  Score=105.33  Aligned_cols=72  Identities=18%  Similarity=0.395  Sum_probs=65.6

Q ss_pred             CcccCCCccccCCCCccccCHHHHHHHHh-hc---cCCCCcccCcCccccCCchhHHHH-HhhhCCCCceecCCCCc
Q psy4796         185 ATRTDKKKFVCFACPYATQYACYIKTHVM-TH---TGDKPFACSYCDYTCNQSSNLQTH-LRIHKTEREYACGKCAY  256 (274)
Q Consensus       185 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h---~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~C~~  256 (274)
                      ..-.++++|.|..|++.|.....|..|++ .|   ++++||.|.+||+.|.....|.+| +++|.+++||.|.++..
T Consensus        11 ~~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~~   87 (102)
T 2ghf_A           11 QNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKR   87 (102)
T ss_dssp             TCCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECCC
T ss_pred             ccCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCcccC
Confidence            34467889999999999999999999998 58   668999999999999999999999 89999999999998664

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=6.5e-17  Score=102.99  Aligned_cols=64  Identities=30%  Similarity=0.618  Sum_probs=40.2

Q ss_pred             HHHhhccCCCCcccCcCccccCCchhHHHHHh-hhCCC-CceecCCCCccCCChhHHHHHHhhhcC
Q psy4796         210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLR-IHKTE-REYACGKCAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~~H~  273 (274)
                      .|+++|+++++|.|.+|++.|.....|.+|++ .|.++ ++|.|++|++.|.....|.+|++.+|+
T Consensus         5 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A            5 SSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             CCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             ccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCC
Confidence            45556666666666666666666666666665 45543 566666666666666666666666654

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=2.4e-16  Score=104.39  Aligned_cols=72  Identities=14%  Similarity=0.329  Sum_probs=52.3

Q ss_pred             cccCHHHHHHHHhhccCCCCcccCcCcccc-CCchhHHHHHhhhCCCCceecCCCCccCCChhHHHHH-HhhhcC
Q psy4796         201 ATQYACYIKTHVMTHTGDKPFACSYCDYTC-NQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLH-LKNMHL  273 (274)
Q Consensus       201 ~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f-~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~~H~  273 (274)
                      .|.....|..|.+.+.++++|.|.+|++.| .....|..|+++| ++++|.|.+|++.|.....|..| ++.|.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~   88 (96)
T 2ctd_A           15 VYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNS   88 (96)
T ss_dssp             SSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCC
T ss_pred             CCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCC
Confidence            445566677777777777777777777777 7777777777777 77777777777777777777777 555543

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.63  E-value=2e-16  Score=101.63  Aligned_cols=54  Identities=20%  Similarity=0.377  Sum_probs=28.0

Q ss_pred             ccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHH
Q psy4796         187 RTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHL  240 (274)
Q Consensus       187 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  240 (274)
                      +...++|.|++||+.|.....|..|+++|++++||.|.+|++.|.....|.+|+
T Consensus        23 ~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~   76 (85)
T 2lv2_A           23 SASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI   76 (85)
T ss_dssp             CCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHH
T ss_pred             CCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhC
Confidence            334444555555555555555555555555555555555555555555555554

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=1.5e-16  Score=98.12  Aligned_cols=61  Identities=23%  Similarity=0.502  Sum_probs=53.6

Q ss_pred             hhccCCCCcccCcCccccCCchhHHHHHhh-h-CCCCceecCCCCccCCChhHHHHHHhhhcC
Q psy4796         213 MTHTGDKPFACSYCDYTCNQSSNLQTHLRI-H-KTEREYACGKCAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       213 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h-~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  273 (274)
                      ++|+++++|.|..|++.|.....|..|++. | .++++|.|++|++.|.+.+.|.+|++.+|+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            467888899999999999999999999887 6 588899999999999999999999998886

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=5.2e-16  Score=99.26  Aligned_cols=71  Identities=24%  Similarity=0.565  Sum_probs=52.6

Q ss_pred             cCCcceeccc--ccccccChHHHHHHHh-hcCCCCcccCCC--CCcccCChhHHHHHHhhhcCCCCccCCCCCCcc
Q psy4796          60 SAKLQFLCLF--CSYVATARIAIKNHLS-SHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRA  130 (274)
Q Consensus        60 ~~~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f  130 (274)
                      +++++|.|..  |++.|.....|..|++ .|.++++|.|..  |++.|.+...|..|+++|.++++|.|+.|++.|
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F   78 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS   78 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCC
Confidence            3456677765  7777777777777777 577777777777  777777777777777777777777777777766

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.63  E-value=4.9e-16  Score=98.06  Aligned_cols=65  Identities=34%  Similarity=0.701  Sum_probs=52.7

Q ss_pred             CcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCce
Q psy4796         185 ATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREY  249 (274)
Q Consensus       185 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  249 (274)
                      ..+.+.++|.|..|++.|.....|..|++.|+++++|.|.+|++.|.....|.+|+++|++++||
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            44566777888888888888888888888888888888888888888888888888888888775

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=4.1e-16  Score=101.48  Aligned_cols=80  Identities=15%  Similarity=0.292  Sum_probs=70.4

Q ss_pred             HHHHhhhccccccccccCCcceecccccccccChHHHHHHHhhcCCC----CcccCCCCCcccCChhHHHHHHhhhcCCC
Q psy4796          44 DMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGW----KPYKCPHCDHCFTQKVVLQRHLLTHTGEK  119 (274)
Q Consensus        44 ~l~~H~~~~~~~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~----~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  119 (274)
                      .+..|++       +|.++++|.|.+|++.|.....|..|++.++..    ++|.|..|++.|.+...|..|++.|++++
T Consensus         2 s~~~H~~-------~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~   74 (86)
T 1x6h_A            2 SSGSSGR-------THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPD   74 (86)
T ss_dssp             TTTCCST-------TCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCC
T ss_pred             Ccccccc-------eecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCC
Confidence            4567888       889999999999999999999999999877665    68999999999999999999999999999


Q ss_pred             CccCCCCCCcc
Q psy4796         120 PFACHLCPYRA  130 (274)
Q Consensus       120 ~~~C~~C~~~f  130 (274)
                      ++.|..|+..+
T Consensus        75 ~~~~~~~~~~~   85 (86)
T 1x6h_A           75 GVEGENSGPSS   85 (86)
T ss_dssp             SCCCCCCCCCC
T ss_pred             CcccCCCCCCC
Confidence            99999998765

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.62  E-value=6.7e-16  Score=97.43  Aligned_cols=62  Identities=26%  Similarity=0.497  Sum_probs=58.5

Q ss_pred             hhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         213 MTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       213 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      ..+.++++|.|..|++.|.....|.+|+++|.++++|.|++|++.|.....|.+|++.|++|
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~   71 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE   71 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCS
T ss_pred             cccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCC
Confidence            35678899999999999999999999999999999999999999999999999999999886

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.61  E-value=4.8e-16  Score=100.89  Aligned_cols=75  Identities=29%  Similarity=0.617  Sum_probs=38.9

Q ss_pred             eec--ccccccccChHHHHHHHhhcCCCCcccCCC--CCcccCChhHHHHHHhhhcCCCCccCCC---CCCccccHHHHH
Q psy4796          65 FLC--LFCSYVATARIAIKNHLSSHLGWKPYKCPH--CDHCFTQKVVLQRHLLTHTGEKPFACHL---CPYRASRKYYIT  137 (274)
Q Consensus        65 ~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~---C~~~f~~~~~l~  137 (274)
                      |.|  +.|++.|.....|..|++.|.++++|.|+.  |++.|.+...|..|++.|.+   |.|+.   |++.|.+...|.
T Consensus         2 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l~   78 (85)
T 2j7j_A            2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLYL   78 (85)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHHH
T ss_pred             ccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHHH
Confidence            445  445555555555555555555555555544  55555555555555555544   55555   555555555555


Q ss_pred             HHHHH
Q psy4796         138 AHLNS  142 (274)
Q Consensus       138 ~H~~~  142 (274)
                      .|++.
T Consensus        79 ~H~~~   83 (85)
T 2j7j_A           79 KHVAE   83 (85)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            55443

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.60  E-value=1.4e-15  Score=97.68  Aligned_cols=61  Identities=18%  Similarity=0.383  Sum_probs=56.6

Q ss_pred             hhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCChhHHHHHHhhhcC
Q psy4796         213 MTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       213 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  273 (274)
                      ..+...++|.|++|++.|.....|.+|+++|++++||.|.+|++.|.....|.+|++..|.
T Consensus        21 ~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~   81 (85)
T 2lv2_A           21 GLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHP   81 (85)
T ss_dssp             SSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCT
T ss_pred             CCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCc
Confidence            4567788999999999999999999999999999999999999999999999999977664

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.60  E-value=1.2e-15  Score=91.00  Aligned_cols=55  Identities=25%  Similarity=0.544  Sum_probs=37.8

Q ss_pred             CcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         220 PFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      ||.|..|++.|.....|..|+++|.++++|.|++|++.|.....|.+|++.|+++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   55 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS   55 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhccc
Confidence            4666667777777777777776676666777777777777777777776666654

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=1.8e-15  Score=94.34  Aligned_cols=64  Identities=25%  Similarity=0.577  Sum_probs=60.4

Q ss_pred             cccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCce
Q psy4796         186 TRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREY  249 (274)
Q Consensus       186 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  249 (274)
                      .+.++++|.|..|++.|.....|..|++.|+++++|.|.+|++.|.....|.+|+++|++++|.
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            4677889999999999999999999999999999999999999999999999999999988763

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=1.1e-15  Score=97.44  Aligned_cols=63  Identities=14%  Similarity=0.336  Sum_probs=35.3

Q ss_pred             ccCCCccccCCCCccccCHHHHHHHHhhccC---CCCcccCcCccccCCchhHHHHHh-hhCCCCce
Q psy4796         187 RTDKKKFVCFACPYATQYACYIKTHVMTHTG---DKPFACSYCDYTCNQSSNLQTHLR-IHKTEREY  249 (274)
Q Consensus       187 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~  249 (274)
                      |.++++|.|.+|++.|.....|..|++.|++   +++|.|.+|++.|.....|.+|++ .|.++++.
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~   68 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLA   68 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSC
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            3455556666666666666666666555553   555666666666666666666652 34444443

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=5.8e-15  Score=93.81  Aligned_cols=65  Identities=18%  Similarity=0.296  Sum_probs=47.1

Q ss_pred             CCCCCCeeeccccCCcchhhHHHHHhhhccccccccccCCcceecccccccccChHHHHHHHhhcCCCCcccC
Q psy4796          23 GPPPADVTCLHCSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKC   95 (274)
Q Consensus        23 ~~~~~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   95 (274)
                      ..+.++|.|.+|++.| .....|..|++       .|.++++|.|++|++.|.....|..|++.|++++||+|
T Consensus        13 ~~~~~~~~C~~C~~~f-~~~~~l~~H~~-------~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           13 QRERRRYKCDECGKSF-SHSSDLSKHRR-------THTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCSCSSBCSSSCCBC-SCHHHHHHHHT-------TTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCCCEECCCCCccc-CCHHHHHHHHH-------HcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            3445667777777777 77777777777       67777777777777777777777777777777777766

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=2.9e-15  Score=93.88  Aligned_cols=64  Identities=30%  Similarity=0.568  Sum_probs=60.7

Q ss_pred             CCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCC
Q psy4796         184 NATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTER  247 (274)
Q Consensus       184 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  247 (274)
                      ...|.++++|.|+.|++.|.....|..|++.|+++++|.|.+|++.|.....|.+|+++|+++.
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            5678899999999999999999999999999999999999999999999999999999998764

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=9.9e-16  Score=102.17  Aligned_cols=72  Identities=13%  Similarity=0.204  Sum_probs=66.8

Q ss_pred             cCHHHHHHHHhhccCCCCcccCcCccccC-CchhHHHHHhhhCC-CCceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         203 QYACYIKTHVMTHTGDKPFACSYCDYTCN-QSSNLQTHLRIHKT-EREYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       203 ~~~~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      .....+..|++.|+++++|.|.+|++.|. ....|.+|+++|++ +++|.|.+|++.|.....|.+|++.||++
T Consensus         7 ~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~   80 (98)
T 2gqj_A            7 GPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA   80 (98)
T ss_dssp             CCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCS
T ss_pred             CCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCC
Confidence            34445678999999999999999999999 99999999999998 99999999999999999999999999985

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=2.9e-15  Score=99.69  Aligned_cols=70  Identities=20%  Similarity=0.410  Sum_probs=49.3

Q ss_pred             cccCCcceecccccccccChHHHHHHHh-hc---CCCCcccCCCCCcccCChhHHHHH-HhhhcCCCCccCCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLS-SH---LGWKPYKCPHCDHCFTQKVVLQRH-LLTHTGEKPFACHLCP  127 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h---~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~C~  127 (274)
                      .-.++++|.|.+|++.|.....|..|++ .|   .+++||.|..|++.|.....|..| ++.|.+++||.|.++.
T Consensus        12 ~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             cCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            4456667777777777777777777775 36   446677777777777777777777 6677777777776643

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.55  E-value=9.9e-16  Score=107.67  Aligned_cols=111  Identities=14%  Similarity=0.183  Sum_probs=85.7

Q ss_pred             CCCCCCCeeeccccC--CcchhhHHHHHhhhccccccccccCCcceeccccccccc------ChHHHHHHHhhcCCCCcc
Q psy4796          22 PGPPPADVTCLHCSL--TTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVAT------ARIAIKNHLSSHLGWKPY   93 (274)
Q Consensus        22 ~~~~~~~~~C~~C~~--~f~~~~~~l~~H~~~~~~~~~~h~~~~~~~C~~C~~~f~------~~~~l~~H~~~h~~~~~~   93 (274)
                      ..++.++|.|...+.  .| .....+..|.        ....++.+.|.+|++.|.      ....|..|+ .|++++||
T Consensus         6 ~~~~~k~~~~~~k~~~~~~-s~ee~~~~~~--------l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~   75 (129)
T 2wbt_A            6 VDSGSKKYLSNHKGIFIHV-TLEELKRYHQ--------LTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQF   75 (129)
T ss_dssp             CCTTCCGGGGCSSCEEEEC-CHHHHHHHTT--------SCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSE
T ss_pred             hcccccccccccCCeeeee-cHHhhhcccc--------CChhhCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCe
Confidence            355677898877654  34 3333223333        234466788999887776      455666666 68889999


Q ss_pred             cCCCCCcccCChhHHHHHHhhhcCCCCccCCCCCCccccHHHHHHHHHHHH
Q psy4796          94 KCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNSLL  144 (274)
Q Consensus        94 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~  144 (274)
                      .|..|++.|.....|..|++.|  +++|.|+.|++.|.....|..|++.++
T Consensus        76 ~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~  124 (129)
T 2wbt_A           76 VCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKH  124 (129)
T ss_dssp             ECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTT
T ss_pred             ECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHC
Confidence            9999999999999999999998  889999999999999999999998753

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=6.1e-15  Score=88.91  Aligned_cols=52  Identities=27%  Similarity=0.579  Sum_probs=34.7

Q ss_pred             CCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCChhHHHHHHhh
Q psy4796         219 KPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKN  270 (274)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  270 (274)
                      +||.|..|++.|.....|.+|+++|.++++|.|++|++.|.+...|.+|++.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   52 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK   52 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTT
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHH
Confidence            3566666666666666666666666666666666666666666666666543

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=6e-15  Score=97.66  Aligned_cols=78  Identities=15%  Similarity=0.187  Sum_probs=67.3

Q ss_pred             CCCCChhhhhhhccCCCCCcccCCCccccCCCCccc-cCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHH-HhhhC
Q psy4796         167 PISSDMSEIIEHCLVCPNATRTDKKKFVCFACPYAT-QYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTH-LRIHK  244 (274)
Q Consensus       167 ~~~~~~~~l~~h~~~~~~~~~~~~~~~~C~~C~~~f-~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~  244 (274)
                      .|.. ...+..|     ...+.++++|.|+.|++.| .....|..|++.| ++++|.|.+|++.|.....|..| +++|.
T Consensus        15 ~~~~-~~~~~~~-----~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~   87 (96)
T 2ctd_A           15 VYAA-GSLEEQW-----YLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHN   87 (96)
T ss_dssp             SSCT-TCHHHHH-----HHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             CCCC-chHHHHH-----HHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcC
Confidence            3444 6666777     6777889999999999999 9999999999999 99999999999999999999999 88898


Q ss_pred             CCCceec
Q psy4796         245 TEREYAC  251 (274)
Q Consensus       245 ~~~~~~C  251 (274)
                      ++..|.+
T Consensus        88 ~~p~~~~   94 (96)
T 2ctd_A           88 SLPSGPS   94 (96)
T ss_dssp             CCSSCSC
T ss_pred             CCCCCCC
Confidence            7654433

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.54  E-value=7e-15  Score=87.64  Aligned_cols=56  Identities=32%  Similarity=0.712  Sum_probs=50.9

Q ss_pred             CCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhCC
Q psy4796         190 KKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKT  245 (274)
Q Consensus       190 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  245 (274)
                      +++|.|+.|++.|.....|..|++.|++++||.|++|++.|.....|.+|++.|++
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            56899999999999999999999999999999999999999999999999999864

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.53  E-value=1.2e-14  Score=86.53  Aligned_cols=56  Identities=27%  Similarity=0.726  Sum_probs=53.7

Q ss_pred             ccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCC
Q psy4796         192 KFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTER  247 (274)
Q Consensus       192 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  247 (274)
                      +|.|+.|++.|.....|..|++.|+++++|.|..|++.|.....|.+|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            58999999999999999999999999999999999999999999999999998875

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=6.5e-15  Score=92.57  Aligned_cols=58  Identities=26%  Similarity=0.595  Sum_probs=42.1

Q ss_pred             hccCCCCcccC--cCccccCCchhHHHHHhhhCCCCceecCCCCccCCChhHHHHHHhhh
Q psy4796         214 THTGDKPFACS--YCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKNM  271 (274)
Q Consensus       214 ~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  271 (274)
                      .+.++++|.|+  .|++.|.....|.+|+++|.++++|.|++|++.|.....|.+|++.|
T Consensus        13 ~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             cCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            45667777775  47777777777777777777777777777777777777777777665

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=1.8e-14  Score=88.60  Aligned_cols=62  Identities=19%  Similarity=0.442  Sum_probs=57.1

Q ss_pred             CCcccCCCccccCCCCccccCHHHHHHHHhh-c-cCCCCcccCcCccccCCchhHHHHHhhhCC
Q psy4796         184 NATRTDKKKFVCFACPYATQYACYIKTHVMT-H-TGDKPFACSYCDYTCNQSSNLQTHLRIHKT  245 (274)
Q Consensus       184 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~-h-~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  245 (274)
                      ..+|.++++|.|+.|++.|.....|..|++. | .++++|.|+.|++.|.....|.+|++.|++
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ccccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            3567889999999999999999999999997 7 589999999999999999999999999875

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=3.4e-14  Score=90.24  Aligned_cols=65  Identities=26%  Similarity=0.547  Sum_probs=58.6

Q ss_pred             CCcccCCCccccCCCCccccCHHHHHHHHh-hccCC-CCcccCcCccccCCchhHHHHHhhhCC-CCc
Q psy4796         184 NATRTDKKKFVCFACPYATQYACYIKTHVM-THTGD-KPFACSYCDYTCNQSSNLQTHLRIHKT-ERE  248 (274)
Q Consensus       184 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~  248 (274)
                      +.+|.++++|.|+.|++.|.....|..|++ .|.++ ++|.|++|++.|.....|.+|++.|++ +.|
T Consensus         7 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p   74 (77)
T 2ct1_A            7 GRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGP   74 (77)
T ss_dssp             CCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSCC
T ss_pred             ccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            889999999999999999999999999997 67765 899999999999999999999998554 443

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=7.2e-14  Score=84.10  Aligned_cols=56  Identities=30%  Similarity=0.619  Sum_probs=52.5

Q ss_pred             CccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHH-hhhCCC
Q psy4796         191 KKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHL-RIHKTE  246 (274)
Q Consensus       191 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~~  246 (274)
                      ++|.|+.|++.|.....|..|++.|+++++|.|+.|++.|.....|.+|+ ++|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            46999999999999999999999999999999999999999999999997 678765

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=9.3e-14  Score=88.41  Aligned_cols=60  Identities=25%  Similarity=0.533  Sum_probs=56.6

Q ss_pred             hccCCCCcccCcCccccCCchhHHHHHhhhCC---CCceecCCCCccCCChhHHHHHHhhhcC
Q psy4796         214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKT---EREYACGKCAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       214 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~l~~H~~~~H~  273 (274)
                      .|+++++|.|.+|++.|.....|.+|+++|.+   +++|.|++|++.|.....|.+|++.+|.
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   63 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP   63 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTST
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCC
Confidence            47899999999999999999999999999986   8999999999999999999999988775

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=1.3e-13  Score=91.19  Aligned_cols=62  Identities=19%  Similarity=0.226  Sum_probs=58.3

Q ss_pred             CccccCCCCccccCHHHHHHHHhh-ccCCCC--------cccCcCccccCCchhHHHHHhhhCCCCceecC
Q psy4796         191 KKFVCFACPYATQYACYIKTHVMT-HTGDKP--------FACSYCDYTCNQSSNLQTHLRIHKTEREYACG  252 (274)
Q Consensus       191 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (274)
                      ..|.|..|++.|.....|..|++. |.++++        |.|.+|++.|.....|.+|+++|+++++|.|+
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            447899999999999999999997 988887        99999999999999999999999999999996

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=6.5e-16  Score=97.19  Aligned_cols=71  Identities=10%  Similarity=0.091  Sum_probs=64.3

Q ss_pred             hhhhhhhccCCCCCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceec
Q psy4796         172 MSEIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC  251 (274)
Q Consensus       172 ~~~l~~h~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (274)
                      ...|..|     +..|.++++|.|+.|++.|.....|..       +++|.|..|++.|.....|.+|+++|.++++|.|
T Consensus         3 ~~~l~~H-----~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C   70 (73)
T 2ctu_A            3 SGSSGKR-----QKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGP   70 (73)
T ss_dssp             CCSCCCC-----CCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSC
T ss_pred             chhHHHH-----HHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCC
Confidence            3456667     788999999999999999998877766       7899999999999999999999999999999999


Q ss_pred             CCC
Q psy4796         252 GKC  254 (274)
Q Consensus       252 ~~C  254 (274)
                      ++|
T Consensus        71 ~~C   73 (73)
T 2ctu_A           71 SSG   73 (73)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            988

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=2.5e-13  Score=85.16  Aligned_cols=61  Identities=30%  Similarity=0.583  Sum_probs=57.0

Q ss_pred             CCcccCCCccccC--CCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhC
Q psy4796         184 NATRTDKKKFVCF--ACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHK  244 (274)
Q Consensus       184 ~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  244 (274)
                      ...+.+.++|.|+  .|++.|.....|..|++.|+++++|.|.+|++.|.....|.+|+++|+
T Consensus        11 ~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           11 NYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             SCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             hccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            4567888999997  699999999999999999999999999999999999999999999884

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.39  E-value=1.4e-13  Score=78.04  Aligned_cols=44  Identities=27%  Similarity=0.478  Sum_probs=39.4

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67788889999999999999999999999999999999999887

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=1.4e-13  Score=78.02  Aligned_cols=44  Identities=30%  Similarity=0.466  Sum_probs=35.6

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            56677888888888888888888888888888888888888776

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.38  E-value=1.5e-13  Score=77.84  Aligned_cols=44  Identities=27%  Similarity=0.516  Sum_probs=35.8

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56677888888888888888888888888888888888888776

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=1.3e-13  Score=77.37  Aligned_cols=44  Identities=27%  Similarity=0.487  Sum_probs=36.6

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|...+.|.+|+++|.++++|.|++|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45678888888888888888888888888888888888888877

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=1.4e-13  Score=77.96  Aligned_cols=44  Identities=27%  Similarity=0.512  Sum_probs=36.4

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             ccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            56778888888888888888888888888888888888888877

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=3.1e-13  Score=82.94  Aligned_cols=59  Identities=20%  Similarity=0.285  Sum_probs=41.1

Q ss_pred             cCCCccccCCCCccccCHHHHHHHHhhccCCCCcccC-cCccccCCchhHHHHHhhhCCCCc
Q psy4796         188 TDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS-YCDYTCNQSSNLQTHLRIHKTERE  248 (274)
Q Consensus       188 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~-~C~~~f~~~~~l~~H~~~h~~~~~  248 (274)
                      -+.++|.|..|++.|. ...|..|+++ ++++||.|. .|++.|.....|..|+++|.+..+
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            3455677777777777 7777777766 777777777 777777777777777777665543

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=2.4e-13  Score=83.46  Aligned_cols=57  Identities=28%  Similarity=0.441  Sum_probs=53.0

Q ss_pred             ccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecC-CCCccCCChhHHHHHHhhhcC
Q psy4796         215 HTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG-KCAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       215 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~-~C~~~f~~~~~l~~H~~~~H~  273 (274)
                      ..+++||.|..|++.|. ...|..|+++ .+++||.|+ .|++.|..++.|..|++.|-+
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~   62 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCN   62 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSS
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcc
Confidence            45678999999999999 9999999999 999999999 999999999999999988754

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=1.5e-13  Score=77.91  Aligned_cols=44  Identities=23%  Similarity=0.394  Sum_probs=35.4

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            56677788888888888888888888888888888888888776

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=1.3e-13  Score=78.19  Aligned_cols=44  Identities=27%  Similarity=0.436  Sum_probs=35.8

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56677888888888888888888888888888888888888776

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.37  E-value=1.6e-13  Score=77.75  Aligned_cols=44  Identities=25%  Similarity=0.429  Sum_probs=36.6

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            56778888888888888888888888888888888888888876

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.4e-13  Score=78.00  Aligned_cols=44  Identities=30%  Similarity=0.464  Sum_probs=36.3

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56778888888888888888888888888888888888888877

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.9e-13  Score=77.49  Aligned_cols=45  Identities=29%  Similarity=0.476  Sum_probs=37.2

Q ss_pred             HHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            366778888888888888888888888888888888888888877

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.5e-13  Score=77.90  Aligned_cols=44  Identities=30%  Similarity=0.494  Sum_probs=35.4

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56677788888888888888888888888888888888888776

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.7e-13  Score=77.60  Aligned_cols=44  Identities=30%  Similarity=0.477  Sum_probs=35.9

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56677888888888888888888888888888888888888876

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.4e-13  Score=78.01  Aligned_cols=44  Identities=30%  Similarity=0.501  Sum_probs=35.8

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|...+.|.+|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            56677888888888888888888888888888888888888876

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=2.3e-15  Score=94.65  Aligned_cols=71  Identities=14%  Similarity=0.182  Sum_probs=62.9

Q ss_pred             hHHHHHhhhccccccccccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCCCcccCChhHHHHHHhhhcCCCCc
Q psy4796          42 MKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPF  121 (274)
Q Consensus        42 ~~~l~~H~~~~~~~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  121 (274)
                      ...|..|++       .|.++++|.|.+|++.|.....|..       +++|.|..|++.|.....|..|++.|.++++|
T Consensus         3 ~~~l~~H~~-------~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~   68 (73)
T 2ctu_A            3 SGSSGKRQK-------IHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTS   68 (73)
T ss_dssp             CCSCCCCCC-------CCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCS
T ss_pred             chhHHHHHH-------HhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCC
Confidence            345778888       8999999999999999998877765       67899999999999999999999999999999


Q ss_pred             cCCCC
Q psy4796         122 ACHLC  126 (274)
Q Consensus       122 ~C~~C  126 (274)
                      .|+.|
T Consensus        69 ~C~~C   73 (73)
T 2ctu_A           69 GPSSG   73 (73)
T ss_dssp             SCCCC
T ss_pred             CCCCC
Confidence            99987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.9e-13  Score=77.45  Aligned_cols=44  Identities=27%  Similarity=0.478  Sum_probs=36.1

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            56678888888888888888888888888888888888888876

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.37  E-value=1.5e-13  Score=77.92  Aligned_cols=45  Identities=29%  Similarity=0.395  Sum_probs=36.8

Q ss_pred             HHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            366778888888888888888888888888888888888888876

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.9e-13  Score=77.48  Aligned_cols=44  Identities=25%  Similarity=0.421  Sum_probs=35.2

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            55677788888888888888888888888888888888888776

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.9e-13  Score=77.46  Aligned_cols=45  Identities=27%  Similarity=0.469  Sum_probs=36.6

Q ss_pred             HHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            356778888888888888888888888888888888888888876

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.8e-13  Score=77.52  Aligned_cols=44  Identities=30%  Similarity=0.427  Sum_probs=36.4

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56778888888888888888888888888888888888888876

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.5e-13  Score=77.83  Aligned_cols=44  Identities=23%  Similarity=0.426  Sum_probs=36.1

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            56678888888888888888888888888888888888888876

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=2e-13  Score=77.36  Aligned_cols=45  Identities=27%  Similarity=0.479  Sum_probs=37.5

Q ss_pred             HHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            366778888888888888888888888888888888888888876

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.8e-13  Score=77.52  Aligned_cols=44  Identities=32%  Similarity=0.539  Sum_probs=36.2

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56778888888888888888888888888888888888888877

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.37  E-value=1.6e-13  Score=77.71  Aligned_cols=44  Identities=25%  Similarity=0.446  Sum_probs=35.8

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56677888888888888888888888888888888888888776

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.6e-13  Score=77.80  Aligned_cols=44  Identities=27%  Similarity=0.459  Sum_probs=36.0

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56677888888888888888888888888888888888888876

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.9e-13  Score=77.48  Aligned_cols=44  Identities=27%  Similarity=0.490  Sum_probs=36.8

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            66778888888888888888888888888888888888888877

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.9e-13  Score=77.42  Aligned_cols=45  Identities=29%  Similarity=0.538  Sum_probs=37.3

Q ss_pred             HHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            366778888888888888888888888888888888888888876

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=2.1e-13  Score=77.23  Aligned_cols=45  Identities=29%  Similarity=0.562  Sum_probs=37.6

Q ss_pred             HHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            366778888888888888888888888888888888888888877

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.6e-13  Score=77.72  Aligned_cols=44  Identities=30%  Similarity=0.536  Sum_probs=36.2

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            56678888888888888888888888888888888888888876

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=1.8e-13  Score=77.52  Aligned_cols=44  Identities=25%  Similarity=0.386  Sum_probs=35.6

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56677888888888888888888888888888888888888776

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=1.5e-12  Score=86.02  Aligned_cols=59  Identities=25%  Similarity=0.368  Sum_probs=31.8

Q ss_pred             ecccccccccChHHHHHHHhh-cCCCCc--------ccCCCCCcccCChhHHHHHHhhhcCCCCccCC
Q psy4796          66 LCLFCSYVATARIAIKNHLSS-HLGWKP--------YKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH  124 (274)
Q Consensus        66 ~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  124 (274)
                      .|..|++.|.....|.+|++. |.+.++        |.|..|++.|.+...|..|+++|+++++|.|+
T Consensus        27 ~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             cccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            344444444444444444443 333333        56666666666666666666666666666664

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=1.7e-13  Score=77.68  Aligned_cols=44  Identities=23%  Similarity=0.319  Sum_probs=35.9

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56677888888888888888888888888888888888888876

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.36  E-value=2e-13  Score=77.36  Aligned_cols=44  Identities=27%  Similarity=0.458  Sum_probs=36.5

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            56778888888888888888888888888888888888888877

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=2e-13  Score=77.32  Aligned_cols=45  Identities=24%  Similarity=0.374  Sum_probs=38.6

Q ss_pred             HHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            366778888888888888888888888888888888888888887

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.4e-13  Score=77.97  Aligned_cols=44  Identities=30%  Similarity=0.409  Sum_probs=35.6

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             cccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56677888888888888888888888888888888888888776

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=2.2e-13  Score=77.20  Aligned_cols=45  Identities=29%  Similarity=0.542  Sum_probs=37.2

Q ss_pred             HHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            366778888888888888888888888888888888888888877

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.9e-13  Score=77.44  Aligned_cols=44  Identities=25%  Similarity=0.454  Sum_probs=34.6

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55677777888888888888888888888888888888888776

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.4e-13  Score=77.95  Aligned_cols=44  Identities=27%  Similarity=0.486  Sum_probs=37.7

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            66778888888888888888888888888888888888888877

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.6e-13  Score=77.74  Aligned_cols=45  Identities=22%  Similarity=0.465  Sum_probs=36.7

Q ss_pred             HHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      .|+++|+++++|.|.+|++.|...+.|..|+++|.++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            366778888888888888888888888888888888888888876

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.6e-13  Score=77.81  Aligned_cols=44  Identities=27%  Similarity=0.517  Sum_probs=34.8

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56677777888888888888888888888888888888888776

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=2.6e-13  Score=76.89  Aligned_cols=44  Identities=25%  Similarity=0.401  Sum_probs=36.1

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            56677888888888888888888888888888888888888876

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=2.6e-13  Score=76.88  Aligned_cols=44  Identities=16%  Similarity=0.194  Sum_probs=36.3

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56678888888888888888888888888888888888888876

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.8e-13  Score=77.57  Aligned_cols=44  Identities=30%  Similarity=0.504  Sum_probs=33.9

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            55677777777777777777777777777777777777777776

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=2.4e-13  Score=77.04  Aligned_cols=44  Identities=23%  Similarity=0.328  Sum_probs=35.3

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56677788888888888888888888888888888888888776

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.34  E-value=6.8e-13  Score=77.87  Aligned_cols=46  Identities=22%  Similarity=0.524  Sum_probs=29.4

Q ss_pred             ccCCCCcccCcCccccCCchhHHHHHh-hhCCCCceecCCCCccCCC
Q psy4796         215 HTGDKPFACSYCDYTCNQSSNLQTHLR-IHKTEREYACGKCAYRTAA  260 (274)
Q Consensus       215 h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~  260 (274)
                      |.++++|.|.+|++.|.....|.+|++ +|.++++|.|.+|++.|.+
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            455666666666666666666666665 5666666666666666653

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.7e-13  Score=77.68  Aligned_cols=45  Identities=31%  Similarity=0.542  Sum_probs=36.8

Q ss_pred             HHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            366778888888888888888888888888888888888888877

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2.3e-13  Score=77.09  Aligned_cols=44  Identities=30%  Similarity=0.490  Sum_probs=34.4

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            55677777788888888888888888888888887888888776

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.34  E-value=3.4e-13  Score=76.36  Aligned_cols=44  Identities=23%  Similarity=0.420  Sum_probs=34.8

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45677778888888888888888888888888888888888776

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=3.3e-13  Score=76.42  Aligned_cols=45  Identities=31%  Similarity=0.519  Sum_probs=36.7

Q ss_pred             HHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            366778888888888888888888888888888888888888765

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.33  E-value=1.1e-12  Score=82.05  Aligned_cols=55  Identities=33%  Similarity=0.664  Sum_probs=26.6

Q ss_pred             cCCCccccCC--CCccccCHHHHHHHHhhccCCCCcccCc--CccccCCchhHHHHHhh
Q psy4796         188 TDKKKFVCFA--CPYATQYACYIKTHVMTHTGDKPFACSY--CDYTCNQSSNLQTHLRI  242 (274)
Q Consensus       188 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~  242 (274)
                      ...++|.|..  |++.|.....|..|++.|+++++|.|.+  |++.|.....|.+|+++
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTT
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhc
Confidence            3444455544  5555555555555555555445555532  55555444444444443

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=4.6e-13  Score=76.19  Aligned_cols=44  Identities=27%  Similarity=0.427  Sum_probs=36.7

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHh-hhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLR-IHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|++ +|.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            5677888888888888888888888888888 8888888888877

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=3.3e-13  Score=76.42  Aligned_cols=44  Identities=23%  Similarity=0.431  Sum_probs=33.7

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            45667777777777777777777777778777777777777776

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=5.6e-13  Score=75.46  Aligned_cols=44  Identities=32%  Similarity=0.559  Sum_probs=36.5

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56778888888888888888888888888888888888888765

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.29  E-value=3.4e-12  Score=79.68  Aligned_cols=58  Identities=29%  Similarity=0.504  Sum_probs=53.2

Q ss_pred             hccCCCCcccCc--CccccCCchhHHHHHhhhCCCCceecCC--CCccCCChhHHHHHHhhh
Q psy4796         214 THTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTEREYACGK--CAYRTAALPDLKLHLKNM  271 (274)
Q Consensus       214 ~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~  271 (274)
                      .....++|.|..  |++.|.....|.+|+++|.++++|.|++  |++.|.....|.+|++.|
T Consensus        11 ~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            345678999998  9999999999999999999999999975  999999999999998765

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.29  E-value=1.8e-12  Score=72.98  Aligned_cols=42  Identities=19%  Similarity=0.491  Sum_probs=31.3

Q ss_pred             hccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCC
Q psy4796         214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCA  255 (274)
Q Consensus       214 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~  255 (274)
                      .|+++++|.|.+|++.|.....|.+|+++|.++++|.|++||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            466777777777777777777777777777777777777775

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.28  E-value=1.1e-12  Score=72.67  Aligned_cols=42  Identities=29%  Similarity=0.556  Sum_probs=34.4

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG  252 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            456778888888888888888888888888888888888875

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.5e-12  Score=72.12  Aligned_cols=42  Identities=24%  Similarity=0.561  Sum_probs=34.3

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG  252 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (274)
                      |+++|++++||.|.+|++.|...+.|.+|+++|.++++|.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            456778888888888888888888888888888888888875

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.27  E-value=2.4e-12  Score=73.53  Aligned_cols=42  Identities=24%  Similarity=0.386  Sum_probs=25.7

Q ss_pred             ccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCc
Q psy4796         215 HTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAY  256 (274)
Q Consensus       215 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~  256 (274)
                      |.++++|.|.+|++.|.....|.+|+++|.++++|.|++|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            445556666666666666666666666666666666666654

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.26  E-value=1.4e-12  Score=73.76  Aligned_cols=43  Identities=37%  Similarity=0.583  Sum_probs=34.9

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK  253 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667888888888888888888888888888888888888864

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=1.4e-12  Score=73.75  Aligned_cols=43  Identities=26%  Similarity=0.435  Sum_probs=34.6

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK  253 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            5667788888888888888888888888888888888888864

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.4e-12  Score=73.73  Aligned_cols=43  Identities=28%  Similarity=0.461  Sum_probs=34.7

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK  253 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667888888888888888888888888888888888888864

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.7e-12  Score=73.37  Aligned_cols=43  Identities=30%  Similarity=0.499  Sum_probs=34.7

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK  253 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            5667788888888888888888888888888888888888864

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.9e-12  Score=73.19  Aligned_cols=43  Identities=30%  Similarity=0.542  Sum_probs=34.2

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK  253 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5667778888888888888888888888888888888888764

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.7e-12  Score=73.42  Aligned_cols=43  Identities=26%  Similarity=0.511  Sum_probs=34.9

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK  253 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667888888888888888888888888888888888888864

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.8e-12  Score=73.26  Aligned_cols=43  Identities=33%  Similarity=0.542  Sum_probs=33.6

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK  253 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667777788888888888888888888888888888887763

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.1e-12  Score=72.98  Aligned_cols=44  Identities=32%  Similarity=0.530  Sum_probs=35.2

Q ss_pred             HHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCC
Q psy4796         210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK  253 (274)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (274)
                      .|+++|+++++|.|..|++.|.....|.+|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            35667788888888888888888888888888888888888864

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.7e-12  Score=73.42  Aligned_cols=42  Identities=31%  Similarity=0.567  Sum_probs=31.6

Q ss_pred             hhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         213 MTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       213 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      ++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            5 SSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            456777777777777777777777777777777777777776

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.9e-12  Score=73.21  Aligned_cols=43  Identities=30%  Similarity=0.488  Sum_probs=34.7

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK  253 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            5677888888888888888888888888888888888888864

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.9e-12  Score=73.19  Aligned_cols=43  Identities=30%  Similarity=0.509  Sum_probs=34.7

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK  253 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            5667788888888888888888888888888888888888864

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.7e-12  Score=73.37  Aligned_cols=43  Identities=26%  Similarity=0.448  Sum_probs=34.6

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK  253 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            5667788888888888888888888888888888888888864

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.7e-12  Score=73.38  Aligned_cols=42  Identities=26%  Similarity=0.456  Sum_probs=30.6

Q ss_pred             hhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         213 MTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       213 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      ++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            456677777777777777777777777777777777777766

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.3e-12  Score=72.88  Aligned_cols=43  Identities=30%  Similarity=0.577  Sum_probs=34.3

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK  253 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            5667778888888888888888888888888888888888764

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.25  E-value=1.8e-13  Score=82.85  Aligned_cols=52  Identities=17%  Similarity=0.272  Sum_probs=34.8

Q ss_pred             HHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCChhHH
Q psy4796         210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDL  264 (274)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l  264 (274)
                      .|++.|++++||.|+.|++.|.....|.   ++|.++++|.|++|++.|....++
T Consensus         4 ~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            4 TDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             CCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTC
T ss_pred             hHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCccc
Confidence            4556667777777777777777666654   567777777777777777655543

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.3e-12  Score=72.85  Aligned_cols=43  Identities=33%  Similarity=0.509  Sum_probs=34.6

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK  253 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5667788888888888888888888888888888888888864

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.9e-12  Score=73.17  Aligned_cols=43  Identities=30%  Similarity=0.505  Sum_probs=33.4

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK  253 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            4567777788888888888888888888888888888887764

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.1e-12  Score=72.98  Aligned_cols=43  Identities=33%  Similarity=0.537  Sum_probs=34.4

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK  253 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            5667778888888888888888888888888888888888764

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2e-12  Score=73.09  Aligned_cols=43  Identities=37%  Similarity=0.568  Sum_probs=33.7

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK  253 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (274)
                      |+++|+++++|.|..|++.|.....|.+|+++|.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667777888888888888888888888888888888887764

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.7e-12  Score=72.57  Aligned_cols=43  Identities=35%  Similarity=0.498  Sum_probs=32.9

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK  253 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5567777777888888888888788888877787777777764

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.8e-12  Score=73.35  Aligned_cols=43  Identities=33%  Similarity=0.537  Sum_probs=34.1

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK  253 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            5667778888888888888888888888888888888888764

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.8e-12  Score=72.53  Aligned_cols=42  Identities=31%  Similarity=0.516  Sum_probs=34.1

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG  252 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            566778888888888888888888888888888888888876

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=2.6e-12  Score=71.87  Aligned_cols=43  Identities=30%  Similarity=0.539  Sum_probs=36.2

Q ss_pred             HHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecC
Q psy4796         210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG  252 (274)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (274)
                      .|+++|++++||.|.+|++.|.....|.+|+++|.++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            3667788888888888888888888888888888888888885

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.4e-12  Score=72.79  Aligned_cols=43  Identities=33%  Similarity=0.521  Sum_probs=33.5

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK  253 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667777788888888888888888888888888888887763

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.23  E-value=1.2e-11  Score=72.44  Aligned_cols=49  Identities=16%  Similarity=0.362  Sum_probs=45.4

Q ss_pred             CCcccCCCccccCCCCccccCHHHHHHHHh-hccCCCCcccCcCccccCC
Q psy4796         184 NATRTDKKKFVCFACPYATQYACYIKTHVM-THTGDKPFACSYCDYTCNQ  232 (274)
Q Consensus       184 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~  232 (274)
                      ...+.++++|.|+.|++.|.....|..|++ +|+++++|.|.+|++.|.+
T Consensus         4 ~~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            4 GSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            456788899999999999999999999997 9999999999999999976

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.4e-12  Score=72.81  Aligned_cols=43  Identities=33%  Similarity=0.560  Sum_probs=34.5

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK  253 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5667788888888888888888888888888888888888864

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.4e-12  Score=72.78  Aligned_cols=43  Identities=30%  Similarity=0.547  Sum_probs=33.3

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK  253 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|+++++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667777778888888888888888888888888888877753

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.9e-12  Score=71.67  Aligned_cols=42  Identities=31%  Similarity=0.479  Sum_probs=32.1

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG  252 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            566777777777777877777777777787777777777774

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.5e-12  Score=71.96  Aligned_cols=42  Identities=21%  Similarity=0.498  Sum_probs=32.9

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG  252 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            566777778888888888888888888888888888887774

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=3.2e-12  Score=71.49  Aligned_cols=43  Identities=35%  Similarity=0.604  Sum_probs=34.1

Q ss_pred             HHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecC
Q psy4796         210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG  252 (274)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (274)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            3566778888888888888888888888888888888888774

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=3.1e-12  Score=72.30  Aligned_cols=43  Identities=26%  Similarity=0.354  Sum_probs=35.5

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCC-CCceecCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKT-EREYACGK  253 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~  253 (274)
                      |+++|++++||.|.+|++.|.....|.+|+++|.+ +++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56778888888888888888888888888888888 88888864

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=4.5e-12  Score=71.62  Aligned_cols=42  Identities=26%  Similarity=0.552  Sum_probs=33.2

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG  252 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            456677788888888888888888888888888888888875

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3.4e-12  Score=72.13  Aligned_cols=42  Identities=31%  Similarity=0.522  Sum_probs=33.6

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG  252 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (274)
                      |+++|++++||.|.+|++.|.....|.+|+++|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            566777788888888888888888888888888888888775

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=3.6e-12  Score=70.51  Aligned_cols=41  Identities=27%  Similarity=0.549  Sum_probs=31.8

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceec
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC  251 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (274)
                      |+++|++++||.|.+|++.|...+.|.+|+++|.++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            45667777788888888888888888888888888777776

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3e-12  Score=72.34  Aligned_cols=43  Identities=28%  Similarity=0.573  Sum_probs=33.9

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK  253 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|+.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667778888888888888888888888888888888888763

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.20  E-value=4.8e-12  Score=69.99  Aligned_cols=41  Identities=20%  Similarity=0.383  Sum_probs=32.3

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceec
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC  251 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            45667778888888888888888888888888888888776

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=4.2e-12  Score=71.73  Aligned_cols=42  Identities=29%  Similarity=0.507  Sum_probs=32.7

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG  252 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            566777777788888888888888888888778777777775

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=3.1e-12  Score=70.75  Aligned_cols=41  Identities=24%  Similarity=0.524  Sum_probs=31.6

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceec
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC  251 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            55677777778888888888877788888777777777776

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.19  E-value=1.9e-12  Score=75.96  Aligned_cols=50  Identities=18%  Similarity=0.254  Sum_probs=36.9

Q ss_pred             ccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCce
Q psy4796         200 YATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREY  249 (274)
Q Consensus       200 ~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  249 (274)
                      +.|.....|..|++.|+++++|.|.+|++.|.....|.+|+++|++++||
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             cccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            45556666677777777777777777777777777777777777777766

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.19  E-value=8.9e-12  Score=70.38  Aligned_cols=44  Identities=41%  Similarity=0.592  Sum_probs=21.0

Q ss_pred             HHhhcCCCCcccCCCCCcccCChhHHHHHHhhhcCCCCccCCCC
Q psy4796          83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC  126 (274)
Q Consensus        83 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  126 (274)
                      |++.|+++++|.|.+|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            33444444444444444444444444444444444444444443

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=4.5e-12  Score=70.90  Aligned_cols=42  Identities=24%  Similarity=0.377  Sum_probs=30.9

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG  252 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (274)
                      |+++|+++++|.|.+|++.|.....|..|+++|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            556677777777777777777777777777777777777764

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.1e-11  Score=70.00  Aligned_cols=41  Identities=15%  Similarity=0.168  Sum_probs=20.6

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|++|++.|.....|..|++.|.++++|.|.+|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            6 SGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44444555555555555555555555555555455555444

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=3.4e-12  Score=70.64  Aligned_cols=41  Identities=24%  Similarity=0.464  Sum_probs=30.9

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceec
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC  251 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (274)
                      |+++|++++||.|.+|++.|.....|.+|+++|.+++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            45667777777777777777777777777777777777766

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.1e-11  Score=69.98  Aligned_cols=41  Identities=20%  Similarity=0.247  Sum_probs=21.2

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|++|++.|.....|..|++.|+++++|.|..|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            6 SGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44455555555555555555555555555555555555444

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=8e-12  Score=69.84  Aligned_cols=42  Identities=21%  Similarity=0.276  Sum_probs=31.8

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG  252 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (274)
                      |++.|+++++|.|.+|++.|.....|..|+++|.++++|.|+
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            456677777777777777777777777777777777777774

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=3.4e-12  Score=71.38  Aligned_cols=42  Identities=21%  Similarity=0.398  Sum_probs=34.2

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG  252 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            566788888888888888888888888888888888888874

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=3.7e-12  Score=71.99  Aligned_cols=43  Identities=30%  Similarity=0.496  Sum_probs=36.0

Q ss_pred             HHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecC
Q psy4796         210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG  252 (274)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (274)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|.++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3667788888888888888888888888888888888888885

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.17  E-value=1.4e-11  Score=69.54  Aligned_cols=44  Identities=39%  Similarity=0.560  Sum_probs=21.9

Q ss_pred             HHhhcCCCCcccCCCCCcccCChhHHHHHHhhhcCCCCccCCCC
Q psy4796          83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC  126 (274)
Q Consensus        83 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  126 (274)
                      |++.|+++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            33444444555555555555555555555555555555555444

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.4e-11  Score=69.52  Aligned_cols=41  Identities=22%  Similarity=0.339  Sum_probs=22.6

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|.+|++.|+++++|.|..|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            6 SGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45555555555555555555555555555555555555544

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=9.5e-12  Score=70.25  Aligned_cols=41  Identities=17%  Similarity=0.246  Sum_probs=20.5

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            6 SGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             ccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44444555555555555555555555555554455555443

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.8e-11  Score=69.09  Aligned_cols=41  Identities=20%  Similarity=0.234  Sum_probs=20.7

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|..|++.|++++||.|.+|
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            6 SGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44445555555555555555555555555555555555444

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=2.1e-11  Score=68.80  Aligned_cols=41  Identities=20%  Similarity=0.293  Sum_probs=25.5

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|++|++.|.....|..|++.|+++++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            6 SGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            55666666666666666666666666666666666666554

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=1.9e-11  Score=67.89  Aligned_cols=40  Identities=18%  Similarity=0.427  Sum_probs=30.9

Q ss_pred             hccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCC
Q psy4796         214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGK  253 (274)
Q Consensus       214 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  253 (274)
                      .|+++++|.|..|++.|.....|.+|+++|+++++|.|++
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            5677777888888888888888888887787777777764

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=9.8e-12  Score=70.20  Aligned_cols=41  Identities=17%  Similarity=0.134  Sum_probs=20.7

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|..|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            6 SGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            44445555555555555555555555555554455555444

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=9.6e-12  Score=69.51  Aligned_cols=42  Identities=26%  Similarity=0.401  Sum_probs=33.5

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG  252 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (274)
                      |+++|+++++|.|.+|++.|.....|.+|+++|.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCCC
Confidence            566778888888888888888888888888888888887764

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=9.5e-12  Score=70.26  Aligned_cols=44  Identities=45%  Similarity=0.606  Sum_probs=23.2

Q ss_pred             HHhhcCCCCcccCCCCCcccCChhHHHHHHhhhcCCCCccCCCC
Q psy4796          83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC  126 (274)
Q Consensus        83 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  126 (274)
                      |++.|+++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            34445555555555555555555555555555555555555544

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=3.8e-11  Score=67.69  Aligned_cols=43  Identities=28%  Similarity=0.369  Sum_probs=41.3

Q ss_pred             CCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcC
Q psy4796         184 NATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYC  226 (274)
Q Consensus       184 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  226 (274)
                      +..|.++++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            4 GSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            6788999999999999999999999999999999999999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=2.2e-11  Score=68.72  Aligned_cols=41  Identities=22%  Similarity=0.212  Sum_probs=25.8

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|.+|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            6 SGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56666666666666666666666666666666666666655

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.8e-11  Score=68.26  Aligned_cols=41  Identities=22%  Similarity=0.268  Sum_probs=26.6

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            6 SGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56666666666666666666666666666666666666655

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1e-11  Score=70.85  Aligned_cols=43  Identities=30%  Similarity=0.521  Sum_probs=32.3

Q ss_pred             HhhccCCCCcccC--cCccccCCchhHHHHHhhhCCCCceecCCC
Q psy4796         212 VMTHTGDKPFACS--YCDYTCNQSSNLQTHLRIHKTEREYACGKC  254 (274)
Q Consensus       212 ~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  254 (274)
                      .++|+++++|.|.  .|++.|.....|.+|+++|.++++|.|.+|
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3567777777776  677777777777777777777777777776

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.3e-11  Score=68.63  Aligned_cols=41  Identities=17%  Similarity=0.174  Sum_probs=23.0

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|.+|++.|+++++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            6 SGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             cCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            55555555555555555555555555555555555555544

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.8e-11  Score=69.06  Aligned_cols=43  Identities=35%  Similarity=0.524  Sum_probs=21.8

Q ss_pred             HhhcCCCCcccCCCCCcccCChhHHHHHHhhhcCCCCccCCCC
Q psy4796          84 LSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLC  126 (274)
Q Consensus        84 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  126 (274)
                      ++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            4 GSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3444444555555555555555555555555555555555444

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.2e-11  Score=68.74  Aligned_cols=41  Identities=17%  Similarity=0.154  Sum_probs=23.1

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|+++++|.|.+|++.|.....|..|++.|+++++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            6 SGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55555555555555555555555555555555555555554

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.4e-11  Score=68.57  Aligned_cols=41  Identities=20%  Similarity=0.230  Sum_probs=25.8

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|++|++.|.....|.+|++.|+++++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            6 SGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            56666666666666666666666666666666666666655

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.15  E-value=2.3e-11  Score=68.60  Aligned_cols=41  Identities=17%  Similarity=0.264  Sum_probs=21.7

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|++|++.|.....|..|++.|+++++|.|+.|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            6 SGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            45555555555555555555555555555555555555544

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.15  E-value=2.4e-11  Score=68.57  Aligned_cols=41  Identities=20%  Similarity=0.238  Sum_probs=25.6

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|..|++.|++++||.|..|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            6 SGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             CCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55666666666666666666666666666666666666554

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.6e-11  Score=68.42  Aligned_cols=41  Identities=24%  Similarity=0.306  Sum_probs=23.4

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|..|++.|++++||.|.+|
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            6 SGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55555555555555555555555555555555555555554

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.15  E-value=2.6e-11  Score=68.38  Aligned_cols=41  Identities=20%  Similarity=0.281  Sum_probs=23.7

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|..|++.|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            6 SGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            55555555555555555555555555555555555555554

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3.2e-11  Score=68.04  Aligned_cols=41  Identities=20%  Similarity=0.302  Sum_probs=24.0

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|++|++.|.....|..|++.|+++++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            6 SGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             TTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            55555556666666666555555556555555555555554

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3e-11  Score=68.15  Aligned_cols=41  Identities=20%  Similarity=0.270  Sum_probs=24.7

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            6 SGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             TTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55555666666666666666666666666666666666554

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.5e-11  Score=68.46  Aligned_cols=41  Identities=17%  Similarity=0.274  Sum_probs=24.2

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|..|++.|.++++|.|..|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            6 SGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            55555556666666666665666666555555555555554

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=2.8e-11  Score=67.53  Aligned_cols=41  Identities=20%  Similarity=0.221  Sum_probs=22.8

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|..|
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45555555555555555555555555555555555555544

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.8e-11  Score=68.29  Aligned_cols=41  Identities=20%  Similarity=0.233  Sum_probs=25.1

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|..|++.|++++||.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            6 SGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55556666666666666666666666666666666666554

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.7e-11  Score=68.30  Aligned_cols=41  Identities=15%  Similarity=0.114  Sum_probs=22.2

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|..|++.|++++||.|..|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            6 SGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             SCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             ccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45555555555555555555555555555555555555544

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3.1e-11  Score=68.07  Aligned_cols=41  Identities=20%  Similarity=0.284  Sum_probs=24.2

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|..|++.|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            6 SGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55555556666666666666666666655655555655554

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=2.3e-11  Score=68.66  Aligned_cols=40  Identities=30%  Similarity=0.431  Sum_probs=29.0

Q ss_pred             hhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecC
Q psy4796         213 MTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG  252 (274)
Q Consensus       213 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (274)
                      +.|+++++|.|.+|++.|.....|.+|+++|.+++||.|.
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            5 SSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            4566777777777777777777777777777777777775

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.7e-11  Score=68.36  Aligned_cols=41  Identities=27%  Similarity=0.310  Sum_probs=24.7

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|..|++.|++++||.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            6 SGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             cCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            55555666666666666666666666666665566666554

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=3.7e-11  Score=67.77  Aligned_cols=41  Identities=20%  Similarity=0.209  Sum_probs=25.1

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|++|++.|.....|..|++.|+++++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            6 SGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55556666666666666666666666666666666666554

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.1e-11  Score=69.68  Aligned_cols=40  Identities=38%  Similarity=0.653  Sum_probs=27.7

Q ss_pred             hhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecC
Q psy4796         213 MTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACG  252 (274)
Q Consensus       213 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (274)
                      ++|+++++|.|.+|++.|.....|.+|+++|.++++|.|+
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            4566667777777777777777777777777777777665

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=3e-11  Score=68.12  Aligned_cols=41  Identities=17%  Similarity=0.229  Sum_probs=22.3

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            6 SGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45555555555555555555555555555555555555544

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=3.9e-11  Score=67.65  Aligned_cols=41  Identities=17%  Similarity=0.250  Sum_probs=22.8

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|.+|++.|+++++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            6 SGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            45555555555555555555555555555555555555544

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=3.1e-11  Score=68.07  Aligned_cols=41  Identities=20%  Similarity=0.101  Sum_probs=25.0

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|..|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            6 SGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             cCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55556666666666666666666666666666666666554

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=3e-11  Score=68.12  Aligned_cols=41  Identities=17%  Similarity=0.310  Sum_probs=23.5

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|..|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            6 SGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             ccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            55555555555555555555555555555555555555554

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.13  E-value=5.5e-11  Score=67.72  Aligned_cols=45  Identities=18%  Similarity=0.423  Sum_probs=41.8

Q ss_pred             CCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCcc
Q psy4796         184 NATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDY  228 (274)
Q Consensus       184 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~  228 (274)
                      ...+..+++|.|.+|++.|.....|..|+++|++++||.|.+|++
T Consensus         4 ~~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CSCCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            456778899999999999999999999999999999999999985

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=3.6e-11  Score=67.81  Aligned_cols=41  Identities=24%  Similarity=0.268  Sum_probs=25.1

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|..|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            6 SGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55566666666666666666666666666666666666554

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=3.9e-11  Score=67.68  Aligned_cols=41  Identities=15%  Similarity=0.250  Sum_probs=28.6

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|++|++.|.....|.+|++.|+++++|.|.+|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            6 SGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            66666677777777777777777777777766667777665

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.13  E-value=4.3e-11  Score=67.48  Aligned_cols=41  Identities=17%  Similarity=0.173  Sum_probs=24.3

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            6 SGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            55555566666666666666666666655655555655554

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=4e-11  Score=67.61  Aligned_cols=43  Identities=26%  Similarity=0.417  Sum_probs=41.3

Q ss_pred             CCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcC
Q psy4796         184 NATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYC  226 (274)
Q Consensus       184 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  226 (274)
                      +..|.++++|.|..|++.|.....|..|+++|++++||.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            4 GSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            7788999999999999999999999999999999999999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=3.1e-11  Score=68.06  Aligned_cols=41  Identities=12%  Similarity=0.063  Sum_probs=23.3

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|++|++.|.....|..|++.|+++++|.|..|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            6 SGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55555555555555555555555555555555555555554

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.5e-11  Score=68.46  Aligned_cols=41  Identities=20%  Similarity=0.216  Sum_probs=22.0

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|++|++.|.....|..|++.|+++++|.|.+|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            6 SGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            45555555555555555555555555555555555555544

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.12  E-value=7.6e-11  Score=66.11  Aligned_cols=44  Identities=16%  Similarity=0.256  Sum_probs=41.3

Q ss_pred             CCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCc
Q psy4796         184 NATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCD  227 (274)
Q Consensus       184 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~  227 (274)
                      ...|+++++|.|..|++.|.....|..|+++|+++++|.|+.||
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            2 SSGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            35678899999999999999999999999999999999999996

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.12  E-value=4.7e-11  Score=67.34  Aligned_cols=41  Identities=15%  Similarity=0.174  Sum_probs=24.9

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      +|.++++|.|.+|++.|.....|..|++.|+++++|.|.+|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            6 SGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55556666666666666666666666666666666666554

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=5.1e-11  Score=67.18  Aligned_cols=41  Identities=24%  Similarity=0.194  Sum_probs=26.1

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            6 SGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            56666666666666666666666666666666666666655

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=3.6e-11  Score=67.83  Aligned_cols=41  Identities=20%  Similarity=0.261  Sum_probs=26.4

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|..|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            6 SGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             ccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            56666666666666666666666666666666666666655

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.4e-11  Score=68.52  Aligned_cols=41  Identities=22%  Similarity=0.306  Sum_probs=22.6

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|.+|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            6 SGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45555555555555555555555555555555555555544

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=5.4e-11  Score=67.06  Aligned_cols=41  Identities=17%  Similarity=0.185  Sum_probs=24.3

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|..|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            6 SGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             ccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55555556666666666666666666655655555655554

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=3.5e-11  Score=66.02  Aligned_cols=38  Identities=24%  Similarity=0.464  Sum_probs=28.5

Q ss_pred             hccCCCCcccCcCccccCCchhHHHHHhhhCCCCceec
Q psy4796         214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC  251 (274)
Q Consensus       214 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (274)
                      +|+++++|.|.+|++.|.....|..|+++|.+++||.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            56677777777777777777777777777777777766

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5.1e-11  Score=67.15  Aligned_cols=41  Identities=22%  Similarity=0.271  Sum_probs=24.5

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|..|++.|++++||.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            6 SGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55555666666666666666666666666666566665543

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.10  E-value=1.8e-11  Score=71.70  Aligned_cols=48  Identities=15%  Similarity=0.203  Sum_probs=45.0

Q ss_pred             ccccCCchhHHHHHhhhCCCCceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         227 DYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       227 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      ++.|.....|..|+++|.++++|.|++|++.|...+.|.+|++.|++|
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~   50 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFA   50 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTT
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            467888999999999999999999999999999999999999999876

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=3.8e-12  Score=79.90  Aligned_cols=60  Identities=22%  Similarity=0.347  Sum_probs=36.5

Q ss_pred             CCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCC
Q psy4796         184 NATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTE  246 (274)
Q Consensus       184 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  246 (274)
                      ...+.+.+++.|..|++.|. ...|..|. .|.+++||.|+.|++.|. ...|..|+++|.++
T Consensus         9 ~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~   68 (75)
T 2d9k_A            9 EETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGRE   68 (75)
T ss_dssp             CCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTB
T ss_pred             CcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCC
Confidence            55556666666666666663 66666666 566666666666666554 35666666665544

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=8.7e-11  Score=66.51  Aligned_cols=41  Identities=20%  Similarity=0.288  Sum_probs=23.6

Q ss_pred             cccCCcceecccccccccChHHHHHHHh-hcCCCCcccCCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLS-SHLGWKPYKCPHC   98 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C   98 (274)
                      .|.++++|.|.+|++.|.....|..|++ .|.+++||.|..|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            6 SGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            5555555555555555555555555555 5555555555554

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.2e-10  Score=65.57  Aligned_cols=43  Identities=28%  Similarity=0.471  Sum_probs=41.0

Q ss_pred             CCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcC
Q psy4796         184 NATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYC  226 (274)
Q Consensus       184 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  226 (274)
                      +..|.++++|.|+.|++.|.....|..|++.|++++||.|.+|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            6778899999999999999999999999999999999999987

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=8.3e-11  Score=66.27  Aligned_cols=43  Identities=23%  Similarity=0.350  Sum_probs=41.0

Q ss_pred             CCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcC
Q psy4796         184 NATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYC  226 (274)
Q Consensus       184 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  226 (274)
                      ...|.++++|.|+.|++.|.....|..|+++|++++||.|.+|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6778899999999999999999999999999999999999987

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.2e-10  Score=65.59  Aligned_cols=40  Identities=28%  Similarity=0.366  Sum_probs=23.1

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPH   97 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   97 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|.+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em2_A            6 SGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSC
T ss_pred             CCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5555555555555555555555555555555555555554

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.03  E-value=4.5e-11  Score=72.07  Aligned_cols=50  Identities=14%  Similarity=0.349  Sum_probs=45.5

Q ss_pred             CCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhH
Q psy4796         184 NATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNL  236 (274)
Q Consensus       184 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l  236 (274)
                      ...|.++++|.|+.||+.|.....|.   +.|++++||.|..|++.|...+++
T Consensus         6 ~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            6 ERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             SSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTC
T ss_pred             HHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCccc
Confidence            78899999999999999999988876   889999999999999999877654

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.6e-10  Score=63.63  Aligned_cols=38  Identities=13%  Similarity=0.110  Sum_probs=20.0

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKC   95 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   95 (274)
                      .|.++++|.|.+|++.|.....|.+|++.|+++++|.|
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            4 GSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             SSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             CcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            44555555555555555555555555555555555544

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.7e-10  Score=64.94  Aligned_cols=39  Identities=18%  Similarity=0.165  Sum_probs=21.1

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCP   96 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   96 (274)
                      .|.++++|.|.+|++.|.....|.+|++.|+++++|.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            6 SGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             SCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            455555555555555555555555555555555555553

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.01  E-value=2.1e-11  Score=78.87  Aligned_cols=68  Identities=12%  Similarity=0.222  Sum_probs=53.4

Q ss_pred             hhhhhccCCCCCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhCC
Q psy4796         174 EIIEHCLVCPNATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKT  245 (274)
Q Consensus       174 ~l~~h~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  245 (274)
                      .|.++.+......|.++++|.|+.|++.|.....|..|+++|++++||.|..|.    ....|..|.+.|.+
T Consensus         7 ~lkr~~~~~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A            7 GLKRDFIILGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             CCCCCCCCCCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             hhccceeeccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhccccc
Confidence            344444444467788899999999999999999999999999999999997765    45556667777776

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.2e-10  Score=64.47  Aligned_cols=39  Identities=23%  Similarity=0.285  Sum_probs=21.5

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCP   96 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   96 (274)
                      .|.++++|.|.+|++.|.....|.+|++.|++++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            6 SGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            455555555555555555555555555555555555554

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.5e-10  Score=65.19  Aligned_cols=42  Identities=43%  Similarity=0.644  Sum_probs=20.6

Q ss_pred             HHhhcCCCCcccCCCCCcccCChhHHHHHHhhhcCCCCccCC
Q psy4796          83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH  124 (274)
Q Consensus        83 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  124 (274)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            344444444555555555555555555555555544555443

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.00  E-value=2.9e-10  Score=62.57  Aligned_cols=38  Identities=16%  Similarity=0.203  Sum_probs=22.6

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKC   95 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   95 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             SSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            55555566666666666666666666666655555555

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.5e-10  Score=64.28  Aligned_cols=39  Identities=18%  Similarity=0.258  Sum_probs=23.0

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCP   96 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   96 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|+
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            6 SGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             CcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            555555566666666666555666665555555555554

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.00  E-value=2.2e-10  Score=64.53  Aligned_cols=39  Identities=21%  Similarity=0.273  Sum_probs=20.8

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCP   96 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   96 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|.
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            6 SGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            455555555555555555555555555555555555554

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.3e-10  Score=64.37  Aligned_cols=39  Identities=23%  Similarity=0.382  Sum_probs=22.4

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCP   96 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   96 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|+
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            6 SGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            555555555555555555555555555555555555554

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.4e-10  Score=64.29  Aligned_cols=39  Identities=23%  Similarity=0.327  Sum_probs=21.9

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCP   96 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   96 (274)
                      .|.++++|.|.+|++.|.....|..|++.|++++||.|.
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            6 SGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             CCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            455555555555555555555555555555555555554

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.5e-10  Score=64.25  Aligned_cols=39  Identities=23%  Similarity=0.296  Sum_probs=20.3

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCP   96 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   96 (274)
                      .|.++++|.|.+|++.|.....|..|++.|++++||.|.
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            6 SGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            445555555555555555555555555555555555543

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.7e-10  Score=64.10  Aligned_cols=39  Identities=18%  Similarity=0.250  Sum_probs=19.6

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCP   96 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   96 (274)
                      .|.++++|.|.+|++.|.....|..|++.|++++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            6 SGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             SSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             ccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            444445555555555555555555555555544455443

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3e-10  Score=63.92  Aligned_cols=39  Identities=15%  Similarity=0.220  Sum_probs=20.5

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCP   96 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   96 (274)
                      .|.++++|.|.+|++.|.....|..|++.|++++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            6 SGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             CCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            455555555555555555555555555555555555554

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.7e-10  Score=64.07  Aligned_cols=39  Identities=21%  Similarity=0.291  Sum_probs=23.4

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCP   96 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   96 (274)
                      .|.++++|.|.+|++.|.....|..|++.|++++||.|.
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            6 SGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             SSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            555555666666666666666666666666655565554

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.9e-10  Score=63.95  Aligned_cols=39  Identities=18%  Similarity=0.300  Sum_probs=23.3

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCP   96 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   96 (274)
                      .|.++++|.|.+|++.|.....|..|++.|++++||.|.
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            6 SGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            555555666666666666666666666666555555554

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.9e-10  Score=63.99  Aligned_cols=39  Identities=18%  Similarity=0.245  Sum_probs=20.8

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCP   96 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   96 (274)
                      .|.++++|.|.+|++.|.....|..|++.|++++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            6 SGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             ccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            455555555555555555555555555555555555554

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3.4e-10  Score=63.66  Aligned_cols=39  Identities=23%  Similarity=0.342  Sum_probs=21.5

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCP   96 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   96 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|.
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            6 SGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            455555555555555555555555555555555555554

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=3e-10  Score=63.91  Aligned_cols=39  Identities=21%  Similarity=0.333  Sum_probs=21.9

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCP   96 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   96 (274)
                      .|.++++|.|.+|++.|.....|..|++.|++++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            6 SGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             ccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            555555555555555555555555555555555555554

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.3e-10  Score=63.77  Aligned_cols=39  Identities=26%  Similarity=0.299  Sum_probs=20.0

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCP   96 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   96 (274)
                      .|.++++|.|.+|++.|.....|..|++.|++++||.|.
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            6 SGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             CCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            444455555555555555555555555555555555543

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.8e-10  Score=64.01  Aligned_cols=39  Identities=21%  Similarity=0.273  Sum_probs=21.3

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCP   96 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   96 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            6 SGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             ccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            455555555555555555555555555555555555554

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.9e-10  Score=63.41  Aligned_cols=39  Identities=18%  Similarity=0.262  Sum_probs=23.6

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCP   96 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   96 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|+
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            6 SGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             SCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             ccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            555566666666666666666666666666665666554

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.2e-10  Score=63.81  Aligned_cols=39  Identities=18%  Similarity=0.280  Sum_probs=23.1

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCP   96 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   96 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|.
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            6 SGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            555555666666666666666666666656555555554

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.6e-10  Score=65.13  Aligned_cols=42  Identities=33%  Similarity=0.500  Sum_probs=22.8

Q ss_pred             HHhhcCCCCcccCCCCCcccCChhHHHHHHhhhcCCCCccCC
Q psy4796          83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH  124 (274)
Q Consensus        83 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  124 (274)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            344455555555555555555555555555555555555554

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.6e-10  Score=63.57  Aligned_cols=39  Identities=18%  Similarity=0.296  Sum_probs=21.4

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCP   96 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   96 (274)
                      .|.++++|.|.+|++.|.....|.+|++.|+++++|.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            6 SGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             SCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            455555555555555555555555555555555555554

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3e-10  Score=63.94  Aligned_cols=39  Identities=13%  Similarity=0.170  Sum_probs=22.9

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCP   96 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   96 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            6 SGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             CCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             cCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            555555566666666666555566665555555555554

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=6.2e-10  Score=62.60  Aligned_cols=42  Identities=29%  Similarity=0.430  Sum_probs=39.8

Q ss_pred             CCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCc
Q psy4796         184 NATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSY  225 (274)
Q Consensus       184 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  225 (274)
                      ...|.++++|.|..|++.|.....|..|+++|++++||.|++
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            4 GSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            678899999999999999999999999999999999999974

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.3e-10  Score=63.74  Aligned_cols=39  Identities=18%  Similarity=0.304  Sum_probs=20.4

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCP   96 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   96 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|.
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            6 SGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            445555555555555555555555555555555555543

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.9e-10  Score=62.76  Aligned_cols=38  Identities=13%  Similarity=0.190  Sum_probs=21.0

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKC   95 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   95 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            6 SGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             CSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             CCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            45555555555555555555555555555555555554

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=4.1e-10  Score=62.63  Aligned_cols=38  Identities=13%  Similarity=0.197  Sum_probs=22.8

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKC   95 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   95 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            6 SGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             CCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            55555566666666666666666666666655555555

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.8e-10  Score=63.49  Aligned_cols=39  Identities=18%  Similarity=0.240  Sum_probs=22.7

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCP   96 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   96 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            6 SGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             ccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            555555555666665555555555555555555555554

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=4.5e-10  Score=62.49  Aligned_cols=38  Identities=16%  Similarity=0.249  Sum_probs=24.1

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKC   95 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   95 (274)
                      .|.++++|.|.+|++.|.....|..|++.|.++++|.|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            6 SGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             SSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             ccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            56666666666666666666666666666666666655

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.2e-10  Score=62.41  Aligned_cols=38  Identities=16%  Similarity=0.292  Sum_probs=22.8

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKC   95 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   95 (274)
                      .|.++++|.|++|++.|.....|..|++.|++++||.|
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            5 SSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             ccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            55555666666666666666666666666665555554

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.6e-10  Score=65.06  Aligned_cols=42  Identities=31%  Similarity=0.495  Sum_probs=21.9

Q ss_pred             HHhhcCCCCcccCCCCCcccCChhHHHHHHhhhcCCCCccCC
Q psy4796          83 HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACH  124 (274)
Q Consensus        83 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  124 (274)
                      |++.|+++++|.|.+|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            444455555555555555555555555555555555555553

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=4.5e-10  Score=62.51  Aligned_cols=38  Identities=21%  Similarity=0.212  Sum_probs=21.1

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKC   95 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   95 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            6 SGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             CCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             ccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            45555555555555555555555555555555555554

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=5.4e-10  Score=62.19  Aligned_cols=38  Identities=13%  Similarity=0.194  Sum_probs=22.0

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKC   95 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   95 (274)
                      .|.++++|.|.+|++.|.....|..|++.|.++++|.|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A            6 SGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             CCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             ccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            55555555555555555555555555555555555555

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=1.1e-09  Score=60.55  Aligned_cols=41  Identities=20%  Similarity=0.293  Sum_probs=38.2

Q ss_pred             CcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCc
Q psy4796         185 ATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSY  225 (274)
Q Consensus       185 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  225 (274)
                      ..|.++++|.|..|++.|.....|..|++.|++++||.|.+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            46788899999999999999999999999999999999974

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=1.7e-10  Score=72.31  Aligned_cols=65  Identities=23%  Similarity=0.243  Sum_probs=58.2

Q ss_pred             HHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         207 YIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       207 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      .|..|+..|.++++|.|..|++.|. ...|..|+ .|.++++|.|+.|++.|. ...|..|++.+.++
T Consensus         4 ~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~   68 (75)
T 2d9k_A            4 GSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGRE   68 (75)
T ss_dssp             CCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTB
T ss_pred             HHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCC
Confidence            4567888899999999999999994 89999999 999999999999999987 58999999887653

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=1.1e-09  Score=61.51  Aligned_cols=42  Identities=24%  Similarity=0.288  Sum_probs=39.3

Q ss_pred             CCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCc
Q psy4796         184 NATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSY  225 (274)
Q Consensus       184 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  225 (274)
                      ...|.++++|.|..|++.|.....|..|++.|++++||.|.+
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            567889999999999999999999999999999999999963

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=8.3e-10  Score=61.72  Aligned_cols=42  Identities=29%  Similarity=0.359  Sum_probs=39.3

Q ss_pred             CCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCc
Q psy4796         184 NATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSY  225 (274)
Q Consensus       184 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  225 (274)
                      ...|.++++|.|..|++.|.....|..|+++|+++++|.|++
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            4 GSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            567889999999999999999999999999999999999974

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=5.7e-10  Score=62.76  Aligned_cols=39  Identities=15%  Similarity=0.128  Sum_probs=24.0

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCC-CCcccCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLG-WKPYKCP   96 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~   96 (274)
                      .|.++++|.|.+|++.|.....|..|++.|++ +++|.|.
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             ccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            55566666666666666666666666666665 5666654

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=5.7e-10  Score=61.38  Aligned_cols=38  Identities=21%  Similarity=0.349  Sum_probs=23.5

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKC   95 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   95 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            5 SSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             ccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            55566666666666666666666666666666666555

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.94  E-value=3.5e-10  Score=60.34  Aligned_cols=36  Identities=22%  Similarity=0.303  Sum_probs=23.0

Q ss_pred             HHhhhCCCCceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         239 HLRIHKTEREYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      |+++|.+++||.|++|++.|.....|.+|++.|++|
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            455566666666666666666666666666666554

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=5.1e-10  Score=62.92  Aligned_cols=39  Identities=21%  Similarity=0.345  Sum_probs=23.5

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccCC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCP   96 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   96 (274)
                      .|.++++|.|++|++.|.....|..|++.|.++++|.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            6 SGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             SSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            555556666666666666666666666666665566554

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.93  E-value=7.2e-10  Score=60.93  Aligned_cols=38  Identities=21%  Similarity=0.233  Sum_probs=25.1

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKC   95 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   95 (274)
                      .|.++++|.|.+|++.|.....|..|++.|++++||.|
T Consensus         5 ~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             cCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            56666666666666666666666666666666666655

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.92  E-value=4.7e-10  Score=60.64  Aligned_cols=37  Identities=19%  Similarity=0.511  Sum_probs=25.8

Q ss_pred             ccCCCCcccCcCccccCCchhHHHHHhhhCCCCceec
Q psy4796         215 HTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYAC  251 (274)
Q Consensus       215 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  251 (274)
                      |+++++|.|.+|++.|...+.|..|+++|.++++|.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            4566777777777777777777777777777777654

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=1.3e-09  Score=61.79  Aligned_cols=43  Identities=26%  Similarity=0.400  Sum_probs=40.6

Q ss_pred             CCcccCCCccccC--CCCccccCHHHHHHHHhhccCCCCcccCcC
Q psy4796         184 NATRTDKKKFVCF--ACPYATQYACYIKTHVMTHTGDKPFACSYC  226 (274)
Q Consensus       184 ~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  226 (274)
                      ...|.++++|.|.  .|++.|.....|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5678899999998  899999999999999999999999999987

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=1.4e-09  Score=60.40  Aligned_cols=41  Identities=15%  Similarity=0.250  Sum_probs=38.7

Q ss_pred             CCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccC
Q psy4796         184 NATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACS  224 (274)
Q Consensus       184 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  224 (274)
                      ...|.++++|.|..|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            4 GSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             SCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            67788999999999999999999999999999999999984

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=9.2e-10  Score=60.51  Aligned_cols=40  Identities=23%  Similarity=0.445  Sum_probs=38.1

Q ss_pred             CCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCccc
Q psy4796         184 NATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFAC  223 (274)
Q Consensus       184 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  223 (274)
                      ...|.++++|.|..|++.|.....|..|++.|++++||.|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            3 SGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            6778899999999999999999999999999999999987

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=1.5e-09  Score=59.24  Aligned_cols=40  Identities=18%  Similarity=0.342  Sum_probs=37.2

Q ss_pred             CCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCccc
Q psy4796         184 NATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFAC  223 (274)
Q Consensus       184 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  223 (274)
                      ...|.++++|.|+.|++.|.....|..|++.|++++||.|
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CSSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CCccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            3567889999999999999999999999999999999988

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.87  E-value=1.7e-09  Score=64.68  Aligned_cols=37  Identities=19%  Similarity=0.269  Sum_probs=17.9

Q ss_pred             ccCCCccccCC--CCccccCHHHHHHHH-hhccCCCCccc
Q psy4796         187 RTDKKKFVCFA--CPYATQYACYIKTHV-MTHTGDKPFAC  223 (274)
Q Consensus       187 ~~~~~~~~C~~--C~~~f~~~~~l~~H~-~~h~~~~~~~C  223 (274)
                      ..+++||.|..  |++.|...+.|..|+ ++|++++||.|
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~   61 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFS   61 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCC
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccc
Confidence            34445555532  555555555555554 34555555544

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=6.8e-10  Score=61.77  Aligned_cols=38  Identities=13%  Similarity=0.116  Sum_probs=21.6

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKC   95 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   95 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            6 SGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            55555555555555555555555555555555555554

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.8e-09  Score=60.02  Aligned_cols=38  Identities=16%  Similarity=0.150  Sum_probs=23.2

Q ss_pred             cccCCcceecccccccccChHHHHHHHhhcCCCCcccC
Q psy4796          58 VTSAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKC   95 (274)
Q Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   95 (274)
                      .|.++++|.|.+|++.|.....|..|++.|+++++|.|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            6 SGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             ccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            55566666666666666666666666666666555554

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.85  E-value=1.1e-09  Score=58.38  Aligned_cols=36  Identities=33%  Similarity=0.540  Sum_probs=28.5

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTE  246 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  246 (274)
                      |++.|++++||.|+.|++.|.....|.+|+++|.++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            566778888888888888888888888888887653

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=1e-09  Score=58.49  Aligned_cols=34  Identities=12%  Similarity=0.541  Sum_probs=19.6

Q ss_pred             hccCCCCcccCcCccccCCchhHHHHHhhhCCCC
Q psy4796         214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTER  247 (274)
Q Consensus       214 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  247 (274)
                      +|+++++|.|.+|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            4555555556556665555555555655555544

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.81  E-value=2.7e-09  Score=55.96  Aligned_cols=33  Identities=21%  Similarity=0.433  Sum_probs=19.8

Q ss_pred             ccCCCCcccCcCccccCCchhHHHHHhhhCCCC
Q psy4796         215 HTGDKPFACSYCDYTCNQSSNLQTHLRIHKTER  247 (274)
Q Consensus       215 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  247 (274)
                      |+++++|.|.+|++.|.....|.+|+++|++++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            455566666666666666666666666665554

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.81  E-value=2.8e-09  Score=55.95  Aligned_cols=33  Identities=27%  Similarity=0.657  Sum_probs=20.3

Q ss_pred             ccCCCCcccCcCccccCCchhHHHHHhhhCCCC
Q psy4796         215 HTGDKPFACSYCDYTCNQSSNLQTHLRIHKTER  247 (274)
Q Consensus       215 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  247 (274)
                      |+++++|.|.+|++.|...+.|.+|+++|.+++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            455666666666666666666666666665554

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=2.3e-09  Score=57.04  Aligned_cols=34  Identities=24%  Similarity=0.333  Sum_probs=32.0

Q ss_pred             hhhCCCCceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         241 RIHKTEREYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       241 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      ++|.++++|.|.+|++.|...+.|..|++.|++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~   35 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPE   35 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSS
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCC
Confidence            5689999999999999999999999999999886

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.77  E-value=4.9e-09  Score=54.22  Aligned_cols=32  Identities=28%  Similarity=0.469  Sum_probs=22.8

Q ss_pred             CCcccCcCccccCCchhHHHHHhhhCCCCcee
Q psy4796         219 KPFACSYCDYTCNQSSNLQTHLRIHKTEREYA  250 (274)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~  250 (274)
                      +||.|.+|++.|.....|..|+++|.++++|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            46777777777777777777777777777664

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.73  E-value=6.4e-09  Score=54.44  Aligned_cols=33  Identities=18%  Similarity=0.347  Sum_probs=30.7

Q ss_pred             hhCCCCceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         242 IHKTEREYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       242 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      +|.++++|.|++|++.|...+.|.+|++.|++|
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   33 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVHGA   33 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTSCT
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHcCC
Confidence            378899999999999999999999999999875

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=7.6e-09  Score=55.10  Aligned_cols=30  Identities=30%  Similarity=0.700  Sum_probs=14.0

Q ss_pred             cCCCCcccCc--CccccCCchhHHHHHhhhCC
Q psy4796         216 TGDKPFACSY--CDYTCNQSSNLQTHLRIHKT  245 (274)
Q Consensus       216 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~  245 (274)
                      ++++||.|.+  |++.|...+.|.+|+++|++
T Consensus         5 ~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg   36 (38)
T 2eln_A            5 SSGILLKCPTDGCDYSTPDKYKLQAHLKVHTA   36 (38)
T ss_dssp             SCCCCEECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            3444444443  44444444444444444443

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=8.4e-09  Score=54.93  Aligned_cols=33  Identities=24%  Similarity=0.315  Sum_probs=30.3

Q ss_pred             hhCCCCceecCC--CCccCCChhHHHHHHhhhcCC
Q psy4796         242 IHKTEREYACGK--CAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       242 ~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      .+.+++||.|+.  |++.|..++.|.+|++.|+++
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            467899999986  999999999999999999885

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.70  E-value=9.5e-09  Score=53.81  Aligned_cols=33  Identities=18%  Similarity=0.203  Sum_probs=30.7

Q ss_pred             hhCCCCceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         242 IHKTEREYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       242 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      +|.++++|.|.+|++.|...+.|.+|++.|+++
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   33 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCC
Confidence            478899999999999999999999999999875

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.70  E-value=1.3e-09  Score=70.36  Aligned_cols=57  Identities=21%  Similarity=0.317  Sum_probs=46.8

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCChhHHHHHHhhh
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKNM  271 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  271 (274)
                      |.++|+++++|.|.+|++.|.....|..|+++|.+++||.|..|...    ..|..|.+.+
T Consensus        16 ~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~~----~~~~~~~~~~   72 (88)
T 1x6f_A           16 GNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQERR----KQLLSKQKYA   72 (88)
T ss_dssp             CCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSCC----CCCCCCCCCC
T ss_pred             cccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhhH----HHHHhhhccc
Confidence            34678999999999999999999999999999999999999887643    3344444444

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=5.2e-09  Score=55.67  Aligned_cols=32  Identities=22%  Similarity=0.411  Sum_probs=15.9

Q ss_pred             hhCCCCceecCCCCccCCChhHHHHH-HhhhcC
Q psy4796         242 IHKTEREYACGKCAYRTAALPDLKLH-LKNMHL  273 (274)
Q Consensus       242 ~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~~H~  273 (274)
                      +|.+++||.|+.|++.|...+.|.+| ++.|++
T Consensus         3 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            3 SGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             SSSSSCEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            34445555555555555555555555 444433

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.69  E-value=1.5e-08  Score=54.47  Aligned_cols=37  Identities=16%  Similarity=0.231  Sum_probs=33.6

Q ss_pred             ccCCCccccCCCCccccCHHHHHHHHhhccCCCCccc
Q psy4796         187 RTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFAC  223 (274)
Q Consensus       187 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  223 (274)
                      |.++++|.|..|++.|.....|..|+++|++++||.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            3567899999999999999999999999999999876

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=1.1e-08  Score=54.03  Aligned_cols=31  Identities=42%  Similarity=0.879  Sum_probs=15.2

Q ss_pred             ccCCCCcccCcCccccCCchhHHHHHhhhCC
Q psy4796         215 HTGDKPFACSYCDYTCNQSSNLQTHLRIHKT  245 (274)
Q Consensus       215 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  245 (274)
                      |++++||.|.+|++.|.....|..|+++|.+
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRHST   34 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHSST
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHhcc
Confidence            4444445555555555555555555544443

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.67  E-value=8.8e-09  Score=55.07  Aligned_cols=35  Identities=26%  Similarity=0.566  Sum_probs=24.2

Q ss_pred             ccCCCCcccC--cCccccCCchhHHHHHhhhCCCCce
Q psy4796         215 HTGDKPFACS--YCDYTCNQSSNLQTHLRIHKTEREY  249 (274)
Q Consensus       215 h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~  249 (274)
                      |+++++|.|.  .|++.|...+.|.+|+++|.++++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4566777777  4777777777777777777776665

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=1.4e-08  Score=53.51  Aligned_cols=31  Identities=35%  Similarity=0.773  Sum_probs=15.2

Q ss_pred             ccCCCCcccCcCccccCCchhHHHHHhhhCC
Q psy4796         215 HTGDKPFACSYCDYTCNQSSNLQTHLRIHKT  245 (274)
Q Consensus       215 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  245 (274)
                      |+++++|.|.+|++.|.....|.+|+++|.+
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKHTG   34 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHccC
Confidence            4444445555555555555555555544444

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=1.1e-08  Score=53.94  Aligned_cols=31  Identities=13%  Similarity=0.412  Sum_probs=15.1

Q ss_pred             ccCCCCcccCcCccccCCchhHHHHHhhhCC
Q psy4796         215 HTGDKPFACSYCDYTCNQSSNLQTHLRIHKT  245 (274)
Q Consensus       215 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  245 (274)
                      |++++||.|.+|++.|.....|.+|+++|.+
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVHGD   34 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTST
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHhcC
Confidence            3444445555555555555555555544443

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=1.2e-08  Score=54.21  Aligned_cols=31  Identities=29%  Similarity=0.717  Sum_probs=15.4

Q ss_pred             ccCCCCcccCcCccccCCc-hhHHHHHhhhCC
Q psy4796         215 HTGDKPFACSYCDYTCNQS-SNLQTHLRIHKT  245 (274)
Q Consensus       215 h~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~  245 (274)
                      |+++++|.|..|++.|... ..|.+|+++|.+
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~   35 (37)
T 2elp_A            4 GSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEG   35 (37)
T ss_dssp             CCCCCCEECSSSSCEECSSCHHHHHHHHHHHT
T ss_pred             CCCCCCeECCCCChhhccCHHHHHHHHHhcCC
Confidence            4444555555555555554 455555554443

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=1e-08  Score=54.45  Aligned_cols=34  Identities=18%  Similarity=0.242  Sum_probs=26.8

Q ss_pred             hhhCCCCceecCCCCccCCCh-hHHHHHHhhhcCC
Q psy4796         241 RIHKTEREYACGKCAYRTAAL-PDLKLHLKNMHLY  274 (274)
Q Consensus       241 ~~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~~H~~  274 (274)
                      ++|.++++|.|++|++.|... +.|.+|++.|++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            357778888888888888887 8888888877765

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.66  E-value=7.3e-09  Score=54.30  Aligned_cols=26  Identities=23%  Similarity=0.410  Sum_probs=17.9

Q ss_pred             ccCCCCcccCcCccccCCchhHHHHH
Q psy4796         215 HTGDKPFACSYCDYTCNQSSNLQTHL  240 (274)
Q Consensus       215 h~~~~~~~C~~C~~~f~~~~~l~~H~  240 (274)
                      +.+++||.|.+|++.|...+.|.+|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            34566777777777777777777776

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=1.5e-08  Score=53.38  Aligned_cols=33  Identities=21%  Similarity=0.475  Sum_probs=30.9

Q ss_pred             hhCCCCceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         242 IHKTEREYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       242 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      .|.++++|.|++|++.|...+.|..|++.|++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            588999999999999999999999999999875

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.64  E-value=3.3e-08  Score=59.10  Aligned_cols=40  Identities=20%  Similarity=0.355  Sum_probs=36.1

Q ss_pred             hccCCCCcccCc--CccccCCchhHHHHH-hhhCCCCceecCC
Q psy4796         214 THTGDKPFACSY--CDYTCNQSSNLQTHL-RIHKTEREYACGK  253 (274)
Q Consensus       214 ~h~~~~~~~C~~--C~~~f~~~~~l~~H~-~~h~~~~~~~C~~  253 (274)
                      ..+++|||.|.+  |++.|...+.|.+|+ ++|++++||.|..
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            367899999975  999999999999998 6899999999965

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=1.5e-08  Score=53.43  Aligned_cols=33  Identities=15%  Similarity=0.093  Sum_probs=30.8

Q ss_pred             hhCCCCceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         242 IHKTEREYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       242 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      .|.++++|.|.+|++.|...+.|.+|++.|++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            578899999999999999999999999999875

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=2.2e-08  Score=52.72  Aligned_cols=32  Identities=19%  Similarity=0.481  Sum_probs=15.7

Q ss_pred             ccCCCCcccCcCccccCCchhHHHHHhhhCCC
Q psy4796         215 HTGDKPFACSYCDYTCNQSSNLQTHLRIHKTE  246 (274)
Q Consensus       215 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  246 (274)
                      |+++++|.|.+|++.|.....|.+|+++|.++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            34444555555555555555555555554443

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=1.8e-08  Score=53.06  Aligned_cols=33  Identities=24%  Similarity=0.539  Sum_probs=30.9

Q ss_pred             hhCCCCceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         242 IHKTEREYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       242 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      +|.++++|.|++|++.|.....|..|++.|++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            588999999999999999999999999999876

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=1.1e-08  Score=54.41  Aligned_cols=34  Identities=21%  Similarity=0.481  Sum_probs=25.8

Q ss_pred             hhccCCCCcccCcCccccCCchhHHHH-HhhhCCC
Q psy4796         213 MTHTGDKPFACSYCDYTCNQSSNLQTH-LRIHKTE  246 (274)
Q Consensus       213 ~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~  246 (274)
                      ++|++++||.|..|++.|.....|.+| +++|.++
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            357777888888888888888888888 7777654

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=2.8e-08  Score=52.30  Aligned_cols=33  Identities=15%  Similarity=0.130  Sum_probs=30.9

Q ss_pred             hhCCCCceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         242 IHKTEREYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       242 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      .|.++++|.|++|++.|.....|.+|++.|++|
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            478899999999999999999999999999886

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=3.1e-08  Score=52.12  Aligned_cols=30  Identities=40%  Similarity=0.801  Sum_probs=14.0

Q ss_pred             cCCCCcccCcCccccCCchhHHHHHhhhCC
Q psy4796         216 TGDKPFACSYCDYTCNQSSNLQTHLRIHKT  245 (274)
Q Consensus       216 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  245 (274)
                      .++++|.|..|++.|.....|..|+++|.+
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2els_A            5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTN   34 (36)
T ss_dssp             SCCCCEECTTTCCEESSHHHHHHHHHHHCC
T ss_pred             CCCCCEECCCCCceeCCHHHHHHHHHHhCC
Confidence            344444444444444444444444444443

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.57  E-value=2.9e-08  Score=56.12  Aligned_cols=34  Identities=29%  Similarity=0.568  Sum_probs=25.4

Q ss_pred             hccCCCCcccCcCccccCCchhHHHHHh-hhCCCC
Q psy4796         214 THTGDKPFACSYCDYTCNQSSNLQTHLR-IHKTER  247 (274)
Q Consensus       214 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~  247 (274)
                      +|+++++|.|.+|++.|.....|.+|++ +|.++.
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            3677888888888888888888888888 777664

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=4.2e-08  Score=51.61  Aligned_cols=33  Identities=15%  Similarity=0.187  Sum_probs=30.6

Q ss_pred             hhCCCCceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         242 IHKTEREYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       242 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      .|.++++|.|++|++.|.....|..|++.|++|
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            477899999999999999999999999999876

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.56  E-value=5.2e-08  Score=50.18  Aligned_cols=32  Identities=22%  Similarity=0.258  Sum_probs=29.9

Q ss_pred             CccccCCCCccccCHHHHHHHHhhccCCCCcc
Q psy4796         191 KKFVCFACPYATQYACYIKTHVMTHTGDKPFA  222 (274)
Q Consensus       191 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~  222 (274)
                      ++|.|+.|++.|.....|..|+++|+++++|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            46999999999999999999999999999885

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.54  E-value=3.2e-08  Score=55.92  Aligned_cols=32  Identities=16%  Similarity=0.282  Sum_probs=16.6

Q ss_pred             ccCCCccccCCCCccccCHHHHHHHHh-hccCC
Q psy4796         187 RTDKKKFVCFACPYATQYACYIKTHVM-THTGD  218 (274)
Q Consensus       187 ~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~  218 (274)
                      |+++++|.|.+|++.|.....|..|++ .|+++
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC-
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCC
Confidence            344555555555555555555555555 55543

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.50  E-value=1.4e-08  Score=57.25  Aligned_cols=34  Identities=26%  Similarity=0.563  Sum_probs=18.5

Q ss_pred             hhccCCCCcccC--cCccccCCchhHHHHHhhhCCC
Q psy4796         213 MTHTGDKPFACS--YCDYTCNQSSNLQTHLRIHKTE  246 (274)
Q Consensus       213 ~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~  246 (274)
                      ..|++++||.|.  .|++.|...+.|.+|+++|.++
T Consensus        11 ~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A           11 VKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             CEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             hccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            345555555553  4555555555555555555544

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.50  E-value=1.9e-08  Score=56.60  Aligned_cols=38  Identities=8%  Similarity=0.169  Sum_probs=28.4

Q ss_pred             HHHHhhhCCCCceecC--CCCccCCChhHHHHHHhhhcCC
Q psy4796         237 QTHLRIHKTEREYACG--KCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       237 ~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      ..|...|.++++|.|.  .|++.|...+.|.+|++.|++|
T Consensus         7 ~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A            7 IDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             GGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             HHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            3445557788888884  6888888888888888887765

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.49  E-value=5.3e-09  Score=53.66  Aligned_cols=31  Identities=23%  Similarity=0.359  Sum_probs=22.4

Q ss_pred             CCcccCcCccccCCchhHHHHHhhhCCCCce
Q psy4796         219 KPFACSYCDYTCNQSSNLQTHLRIHKTEREY  249 (274)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  249 (274)
                      +||.|.+|++.|...+.|.+|+++|++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            4677777777777777777777777777665

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.46  E-value=7.5e-08  Score=51.01  Aligned_cols=30  Identities=30%  Similarity=0.565  Sum_probs=13.4

Q ss_pred             cCCCCcccCc--CccccCCchhHHHHHhhhCC
Q psy4796         216 TGDKPFACSY--CDYTCNQSSNLQTHLRIHKT  245 (274)
Q Consensus       216 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~  245 (274)
                      +++++|.|.+  |++.|...+.|.+|+++|.+
T Consensus         4 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~   35 (37)
T 1va1_A            4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTG   35 (37)
T ss_dssp             SSCCCEECCSTTCCCEESCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            3444444442  44444444444444444443

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.45  E-value=1.1e-07  Score=50.34  Aligned_cols=32  Identities=16%  Similarity=0.210  Sum_probs=29.7

Q ss_pred             hCCCCceecCC--CCccCCChhHHHHHHhhhcCC
Q psy4796         243 HKTEREYACGK--CAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       243 h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      |.++++|.|.+  |++.|...+.|.+|++.|++|
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            78899999995  999999999999999999886

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.44  E-value=1.2e-07  Score=47.03  Aligned_cols=26  Identities=31%  Similarity=0.625  Sum_probs=12.0

Q ss_pred             CcccCcCccccCCchhHHHHHhhhCC
Q psy4796         220 PFACSYCDYTCNQSSNLQTHLRIHKT  245 (274)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~h~~  245 (274)
                      ||.|..|++.|.....|..|+++|.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcC
Confidence            34444444444444444444444443

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.43  E-value=1.5e-07  Score=46.65  Aligned_cols=28  Identities=25%  Similarity=0.386  Sum_probs=26.3

Q ss_pred             CceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         247 REYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       247 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      +||.|++|++.|...+.|..|++.|++|
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            5899999999999999999999999876

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.43  E-value=1.7e-07  Score=46.42  Aligned_cols=26  Identities=27%  Similarity=0.657  Sum_probs=12.9

Q ss_pred             CcccCcCccccCCchhHHHHHhhhCC
Q psy4796         220 PFACSYCDYTCNQSSNLQTHLRIHKT  245 (274)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~h~~  245 (274)
                      ||.|..|++.|.....|..|+++|.+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcC
Confidence            34455555555555555555544443

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.42  E-value=1.3e-07  Score=47.17  Aligned_cols=25  Identities=28%  Similarity=0.805  Sum_probs=10.7

Q ss_pred             CcccCcCccccCCchhHHHHHhhhC
Q psy4796         220 PFACSYCDYTCNQSSNLQTHLRIHK  244 (274)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~h~  244 (274)
                      ||.|..|++.|.....|..|+++|.
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~~h~   27 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLETHD   27 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHTTC
T ss_pred             CccCCCCCcccCCHHHHHHHHHHhc
Confidence            3444444444444444444444443

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.42  E-value=1.5e-07  Score=46.91  Aligned_cols=29  Identities=17%  Similarity=0.291  Sum_probs=27.0

Q ss_pred             CCceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         246 EREYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       246 ~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      +++|.|..|++.|.....|..|++.|++|
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            47899999999999999999999999875

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.40  E-value=1.7e-07  Score=46.00  Aligned_cols=26  Identities=23%  Similarity=0.525  Sum_probs=14.3

Q ss_pred             CceecCCCCccCCChhHHHHHHhhhc
Q psy4796         247 REYACGKCAYRTAALPDLKLHLKNMH  272 (274)
Q Consensus       247 ~~~~C~~C~~~f~~~~~l~~H~~~~H  272 (274)
                      ++|.|++|++.|...+.|..|++.|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcC
Confidence            45555555555555555555555544

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.39  E-value=1.7e-07  Score=45.50  Aligned_cols=26  Identities=23%  Similarity=0.411  Sum_probs=14.7

Q ss_pred             eecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         249 YACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       249 ~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      |.|.+|++.|.....|.+|++.|++|
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             ccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            55556666666555666665555543

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.39  E-value=2.1e-07  Score=46.04  Aligned_cols=28  Identities=25%  Similarity=0.406  Sum_probs=26.1

Q ss_pred             CceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         247 REYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       247 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      ++|.|++|++.|...+.|..|++.|++|
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            4799999999999999999999999875

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.39  E-value=2.5e-07  Score=46.10  Aligned_cols=27  Identities=33%  Similarity=0.929  Sum_probs=14.4

Q ss_pred             CcccCcCccccCCchhHHHHHhhhCCC
Q psy4796         220 PFACSYCDYTCNQSSNLQTHLRIHKTE  246 (274)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~h~~~  246 (274)
                      +|.|..|++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccC
Confidence            455555555555555555555555444

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.38  E-value=2.2e-07  Score=45.92  Aligned_cols=26  Identities=31%  Similarity=0.446  Sum_probs=13.0

Q ss_pred             ceecCCCCccCCChhHHHHHHhhhcC
Q psy4796         248 EYACGKCAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       248 ~~~C~~C~~~f~~~~~l~~H~~~~H~  273 (274)
                      ||.|+.|++.|.....|..|++.|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhcc
Confidence            44455555555555555555544444

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.38  E-value=3.3e-07  Score=46.58  Aligned_cols=28  Identities=25%  Similarity=0.666  Sum_probs=15.0

Q ss_pred             CCcccC--cCccccCCchhHHHHHhhhCCC
Q psy4796         219 KPFACS--YCDYTCNQSSNLQTHLRIHKTE  246 (274)
Q Consensus       219 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~  246 (274)
                      +||.|.  .|++.|.....|..|+++|+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            445555  4555555555555555555543

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.37  E-value=2.5e-07  Score=55.75  Aligned_cols=41  Identities=15%  Similarity=0.252  Sum_probs=33.8

Q ss_pred             hccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCC
Q psy4796         214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCA  255 (274)
Q Consensus       214 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~  255 (274)
                      .+.+++||.|.+|++.|.....|.+|+++|+++. ..+.++.
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~-~~~~~~~   47 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQHGVTS-LQLGYID   47 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS-CCCCSCC
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc-ccccccc
Confidence            4678899999999999999999999999999864 3344443

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.37  E-value=2.6e-07  Score=46.03  Aligned_cols=28  Identities=36%  Similarity=0.748  Sum_probs=26.1

Q ss_pred             CceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         247 REYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       247 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      ++|.|++|++.|...+.|..|++.|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccC
Confidence            4799999999999999999999999975

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.36  E-value=2.1e-07  Score=45.30  Aligned_cols=23  Identities=22%  Similarity=0.681  Sum_probs=10.2

Q ss_pred             ceecCCCCccCCChhHHHHHHhh
Q psy4796         248 EYACGKCAYRTAALPDLKLHLKN  270 (274)
Q Consensus       248 ~~~C~~C~~~f~~~~~l~~H~~~  270 (274)
                      ||.|++|++.|...+.|..|++.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHLRT   25 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCCcChhhCCHHHHHHHHHH
Confidence            44444444444444444444433

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.36  E-value=2e-07  Score=45.77  Aligned_cols=26  Identities=31%  Similarity=0.825  Sum_probs=19.0

Q ss_pred             CCcccCcCccccCCchhHHHHHhhhC
Q psy4796         219 KPFACSYCDYTCNQSSNLQTHLRIHK  244 (274)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h~  244 (274)
                      +||.|.+|++.|.....|..|+++|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcC
Confidence            56777777777777777777777665

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.36  E-value=2.9e-07  Score=48.89  Aligned_cols=36  Identities=22%  Similarity=0.348  Sum_probs=32.1

Q ss_pred             ccCCCccccC--CCCccccCHHHHHHHHhhccCCCCcc
Q psy4796         187 RTDKKKFVCF--ACPYATQYACYIKTHVMTHTGDKPFA  222 (274)
Q Consensus       187 ~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~  222 (274)
                      |.++++|.|.  .|++.|.....|..|++.|+++++|.
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~   38 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKFG   38 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTTC
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            3567899999  59999999999999999999998873

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.36  E-value=2.2e-07  Score=45.86  Aligned_cols=28  Identities=43%  Similarity=0.774  Sum_probs=22.0

Q ss_pred             CCcccCcCccccCCchhHHHHHhhhCCC
Q psy4796         219 KPFACSYCDYTCNQSSNLQTHLRIHKTE  246 (274)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  246 (274)
                      +||.|..|++.|.....|..|+++|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            4678888888888888888888887765

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.36  E-value=2.7e-07  Score=55.56  Aligned_cols=43  Identities=16%  Similarity=0.213  Sum_probs=35.6

Q ss_pred             CCcccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCc
Q psy4796         184 NATRTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCD  227 (274)
Q Consensus       184 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~  227 (274)
                      ...+..+++|.|..|++.|.....|..|+++|+++. ..+.+++
T Consensus         5 ~~~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~-~~~~~~~   47 (66)
T 2epp_A            5 SSGLREAGILPCGLCGKVFTDANRLRQHEAQHGVTS-LQLGYID   47 (66)
T ss_dssp             SCSCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS-CCCCSCC
T ss_pred             CCCCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc-ccccccc
Confidence            345778899999999999999999999999999875 4555544

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.35  E-value=3.1e-07  Score=46.31  Aligned_cols=26  Identities=42%  Similarity=0.875  Sum_probs=12.3

Q ss_pred             CcccC--cCccccCCchhHHHHHhhhCC
Q psy4796         220 PFACS--YCDYTCNQSSNLQTHLRIHKT  245 (274)
Q Consensus       220 ~~~C~--~C~~~f~~~~~l~~H~~~h~~  245 (274)
                      ||.|.  .|++.|...+.|..|+++|++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~   29 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcC
Confidence            34444  444444444444444444444

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.34  E-value=2.8e-07  Score=44.79  Aligned_cols=27  Identities=41%  Similarity=0.821  Sum_probs=25.0

Q ss_pred             CCCcccCcCccccCCchhHHHHHhhhC
Q psy4796         218 DKPFACSYCDYTCNQSSNLQTHLRIHK  244 (274)
Q Consensus       218 ~~~~~C~~C~~~f~~~~~l~~H~~~h~  244 (274)
                      ++||.|..|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            478999999999999999999999884

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.34  E-value=2e-07  Score=46.11  Aligned_cols=24  Identities=42%  Similarity=0.776  Sum_probs=9.9

Q ss_pred             cccCcCccccCCchhHHHHHhhhC
Q psy4796         221 FACSYCDYTCNQSSNLQTHLRIHK  244 (274)
Q Consensus       221 ~~C~~C~~~f~~~~~l~~H~~~h~  244 (274)
                      |.|.+|++.|.....|..|+++|.
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2m0f_A            3 LKCRECGKQFTTSGNLKRHLRIHS   26 (29)
T ss_dssp             EECTTTSCEESCHHHHHHHHHHHH
T ss_pred             ccCCCCCCccCChhHHHHHHHHhc
Confidence            344444444444444444444433

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.34  E-value=1.6e-07  Score=45.74  Aligned_cols=23  Identities=22%  Similarity=0.622  Sum_probs=10.5

Q ss_pred             ceecCCCCccCCChhHHHHHHhh
Q psy4796         248 EYACGKCAYRTAALPDLKLHLKN  270 (274)
Q Consensus       248 ~~~C~~C~~~f~~~~~l~~H~~~  270 (274)
                      ||.|++|++.|...+.|.+|++.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHTT
T ss_pred             CcCCCCCCcccCCHHHHHHHHHh
Confidence            44444444444444444444443

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.33  E-value=2.7e-07  Score=45.56  Aligned_cols=28  Identities=21%  Similarity=0.299  Sum_probs=26.2

Q ss_pred             CceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         247 REYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       247 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      ++|.|++|++.|.....|..|++.|++|
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCC
Confidence            5799999999999999999999999876

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.33  E-value=2.2e-07  Score=45.25  Aligned_cols=27  Identities=30%  Similarity=0.779  Sum_probs=24.9

Q ss_pred             CCCcccCcCccccCCchhHHHHHhhhC
Q psy4796         218 DKPFACSYCDYTCNQSSNLQTHLRIHK  244 (274)
Q Consensus       218 ~~~~~C~~C~~~f~~~~~l~~H~~~h~  244 (274)
                      ++||.|..|++.|...+.|.+|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            478999999999999999999999874

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.32  E-value=3.4e-07  Score=47.82  Aligned_cols=32  Identities=22%  Similarity=0.533  Sum_probs=28.2

Q ss_pred             ccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCc
Q psy4796         187 RTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSY  225 (274)
Q Consensus       187 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  225 (274)
                      +.++++|.|+.||+.|...+.|..|+       ||.|..
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~-------py~C~~   34 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ-------AYYCSH   34 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH-------HHTSTT
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC-------CeECcC
Confidence            46789999999999999999999998       787764

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.66  E-value=7e-08  Score=47.93  Aligned_cols=26  Identities=35%  Similarity=0.666  Sum_probs=12.6

Q ss_pred             CcccCcCccccCCchhHHHHHhhhCC
Q psy4796         220 PFACSYCDYTCNQSSNLQTHLRIHKT  245 (274)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~h~~  245 (274)
                      ||.|..|++.|.....|..|+++|.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTG   27 (29)
Confidence            34444455555444444445444443

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.31  E-value=4.8e-07  Score=45.94  Aligned_cols=29  Identities=28%  Similarity=0.408  Sum_probs=26.9

Q ss_pred             CCceecC--CCCccCCChhHHHHHHhhhcCC
Q psy4796         246 EREYACG--KCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       246 ~~~~~C~--~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      ++||.|.  .|++.|...+.|..|++.|++|
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            4789999  8999999999999999999886

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.30  E-value=4.2e-07  Score=45.77  Aligned_cols=28  Identities=21%  Similarity=0.369  Sum_probs=26.1

Q ss_pred             CceecC--CCCccCCChhHHHHHHhhhcCC
Q psy4796         247 REYACG--KCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       247 ~~~~C~--~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      +||.|+  .|++.|...+.|..|++.|++|
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            579998  9999999999999999999886

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.64  E-value=8.1e-08  Score=47.68  Aligned_cols=28  Identities=14%  Similarity=0.224  Sum_probs=26.0

Q ss_pred             CceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         247 REYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       247 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      +||.|++|++.|...+.|..|++.|++|
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            4799999999999999999999999875

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.29  E-value=4.1e-07  Score=44.12  Aligned_cols=26  Identities=31%  Similarity=0.746  Sum_probs=17.9

Q ss_pred             CcccCcCccccCCchhHHHHHhhhCC
Q psy4796         220 PFACSYCDYTCNQSSNLQTHLRIHKT  245 (274)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~h~~  245 (274)
                      ||.|..|++.|.....|.+|+++|.+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            46677777777777777777777654

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.61  E-value=9.7e-08  Score=47.74  Aligned_cols=27  Identities=37%  Similarity=0.770  Sum_probs=13.8

Q ss_pred             CCcccCcCccccCCchhHHHHHhhhCC
Q psy4796         219 KPFACSYCDYTCNQSSNLQTHLRIHKT  245 (274)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h~~  245 (274)
                      +||.|..|++.|.....|..|+++|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTG   28 (30)
Confidence            345555555555555555555555443

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.59  E-value=1.1e-07  Score=47.55  Aligned_cols=28  Identities=21%  Similarity=0.319  Sum_probs=20.3

Q ss_pred             CceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         247 REYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       247 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      +||.|++|++.|.....|..|++.|++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            5677777777777777777777777654

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.26  E-value=5.4e-07  Score=44.90  Aligned_cols=27  Identities=26%  Similarity=0.613  Sum_probs=13.7

Q ss_pred             CcccCcCccccCCchhHHHH-HhhhCCC
Q psy4796         220 PFACSYCDYTCNQSSNLQTH-LRIHKTE  246 (274)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H-~~~h~~~  246 (274)
                      ||.|..|++.|.....|..| +++|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccCC
Confidence            45555555555555555555 3445443

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.20  E-value=7.3e-07  Score=44.38  Aligned_cols=28  Identities=29%  Similarity=0.308  Sum_probs=25.0

Q ss_pred             CceecCCCCccCCChhHHHHH-HhhhcCC
Q psy4796         247 REYACGKCAYRTAALPDLKLH-LKNMHLY  274 (274)
Q Consensus       247 ~~~~C~~C~~~f~~~~~l~~H-~~~~H~~  274 (274)
                      +||.|+.|++.|...+.|..| ++.|.+|
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            479999999999999999999 6777765

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.49  E-value=2e-07  Score=44.88  Aligned_cols=24  Identities=42%  Similarity=0.811  Sum_probs=10.8

Q ss_pred             CcccCcCccccCCchhHHHHHhhh
Q psy4796         220 PFACSYCDYTCNQSSNLQTHLRIH  243 (274)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~h  243 (274)
                      ||.|.+|++.|.....|..|+++|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            344444444444444444444443

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.43  E-value=2.9e-07  Score=44.30  Aligned_cols=26  Identities=23%  Similarity=0.608  Sum_probs=23.7

Q ss_pred             CceecCCCCccCCChhHHHHHHhhhc
Q psy4796         247 REYACGKCAYRTAALPDLKLHLKNMH  272 (274)
Q Consensus       247 ~~~~C~~C~~~f~~~~~l~~H~~~~H  272 (274)
                      +||.|++|++.|...+.|..|++.|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            57999999999999999999998763

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.05  E-value=7.4e-06  Score=48.96  Aligned_cols=47  Identities=23%  Similarity=0.495  Sum_probs=32.3

Q ss_pred             CccccCCchhHHHHH-hhhCCCC------ceecC--CCCccCCChhHHHHHHhhhc
Q psy4796         226 CDYTCNQSSNLQTHL-RIHKTER------EYACG--KCAYRTAALPDLKLHLKNMH  272 (274)
Q Consensus       226 C~~~f~~~~~l~~H~-~~h~~~~------~~~C~--~C~~~f~~~~~l~~H~~~~H  272 (274)
                      |++.|.+...|..|+ ..|.+.+      +|.|.  .|+..+.....|..|++..|
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            666666666666666 3465444      67775  77777777777888877765

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.02  E-value=8.5e-07  Score=45.07  Aligned_cols=30  Identities=10%  Similarity=0.212  Sum_probs=19.5

Q ss_pred             CeeeccccCCcchhhHHHHHhhhccccccccccCCcce
Q psy4796          28 DVTCLHCSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQF   65 (274)
Q Consensus        28 ~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~h~~~~~~   65 (274)
                      +|.|..|++.| .....|..|++       .|+++++|
T Consensus         2 p~~C~~C~k~f-~~~~~L~~H~~-------~H~~~kp~   31 (32)
T 2kfq_A            2 AFACPACPKRF-MRSDALSKHIK-------TAFIVVAL   31 (32)
T ss_dssp             CSSSSSSCTTH-HHHHTTSSSTT-------SSSSSSSC
T ss_pred             CCCCCCCCccc-CCHHHHHHHHH-------HHccCCCC
Confidence            56667777777 66666666666       66665544

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.01  E-value=3.1e-06  Score=41.55  Aligned_cols=25  Identities=24%  Similarity=0.359  Sum_probs=12.9

Q ss_pred             ceecC--CCCccCCChhHHHHHHhhhc
Q psy4796         248 EYACG--KCAYRTAALPDLKLHLKNMH  272 (274)
Q Consensus       248 ~~~C~--~C~~~f~~~~~l~~H~~~~H  272 (274)
                      +|.|+  .|++.|...+.|..|++.|+
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            45555  55555555555555555443

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.00  E-value=2.8e-06  Score=41.71  Aligned_cols=25  Identities=28%  Similarity=0.668  Sum_probs=16.7

Q ss_pred             CcccC--cCccccCCchhHHHHHhhhC
Q psy4796         220 PFACS--YCDYTCNQSSNLQTHLRIHK  244 (274)
Q Consensus       220 ~~~C~--~C~~~f~~~~~l~~H~~~h~  244 (274)
                      +|.|.  .|++.|.....|..|+++|+
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            56666  66666666666666666664

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.66  E-value=9.9e-05  Score=43.99  Aligned_cols=45  Identities=33%  Similarity=0.654  Sum_probs=22.1

Q ss_pred             CCcccCChhHHHHHHh-hhcCCC------CccCC--CCCCccccHHHHHHHHHH
Q psy4796          98 CDHCFTQKVVLQRHLL-THTGEK------PFACH--LCPYRASRKYYITAHLNS  142 (274)
Q Consensus        98 C~~~f~~~~~l~~H~~-~h~~~~------~~~C~--~C~~~f~~~~~l~~H~~~  142 (274)
                      |++.|.+...|..|+. .|.+.+      +|.|.  .|++.+.....|..|++.
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccc
Confidence            4555555555555542 343332      45553  555555555555555543

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.26  E-value=6.7e-05  Score=51.56  Aligned_cols=75  Identities=11%  Similarity=0.121  Sum_probs=50.9

Q ss_pred             CccccCCCCccccCHHHHHHHH--hhccCC-CCcccCcC------ccccCCchhHHHHHhhhCCCCceecCCCCccCCCh
Q psy4796         191 KKFVCFACPYATQYACYIKTHV--MTHTGD-KPFACSYC------DYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAAL  261 (274)
Q Consensus       191 ~~~~C~~C~~~f~~~~~l~~H~--~~h~~~-~~~~C~~C------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  261 (274)
                      +++.|.+|+..|.+...+..|.  +.|... +.|.+...      ++.+....    +...+.+...|.|.+|.+.|.+.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~C~~C~~~f~s~  106 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRSKCCPVCNMTFSSP  106 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTTTEETTTTEECSSH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCCCCeEcCCCCCEeCCH
Confidence            4588999999999999999998  466432 23333111      22222211    22335567789999999999999


Q ss_pred             hHHHHHHh
Q psy4796         262 PDLKLHLK  269 (274)
Q Consensus       262 ~~l~~H~~  269 (274)
                      ..+..|+.
T Consensus       107 ~~~~~H~~  114 (127)
T 1zu1_A          107 VVAESHYI  114 (127)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHC
Confidence            99999974

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.94  E-value=0.00067  Score=49.24  Aligned_cols=77  Identities=22%  Similarity=0.397  Sum_probs=51.4

Q ss_pred             ccc--CCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCChhHHHHHHhh
Q psy4796         193 FVC--FACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKN  270 (274)
Q Consensus       193 ~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  270 (274)
                      ..|  ..|+..+. ...+..|.. .-.-+++.|+.|+..+ .+..|..|+...-..+.-.|+.|+..+ ....|..|...
T Consensus        83 v~C~n~GC~~~~~-~~~l~~H~~-~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~-~~~~l~~H~~~  158 (170)
T 3hcs_A           83 VKCPNEGCLHKME-LRHLEDHQA-HCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASM-AFEDKEIHDQN  158 (170)
T ss_dssp             EECCSTTCCCEEE-GGGHHHHHT-TCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEE-EGGGHHHHHTT
T ss_pred             cCCCCCCCCceec-HhHHHHHHh-cCCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCcc-CHHHHHhHHHh
Confidence            455  35666554 445666763 2234567788888776 566788888777777778888888776 45567888766


Q ss_pred             hcC
Q psy4796         271 MHL  273 (274)
Q Consensus       271 ~H~  273 (274)
                      +.|
T Consensus       159 ~~~  161 (170)
T 3hcs_A          159 CPL  161 (170)
T ss_dssp             CCC
T ss_pred             CcC
Confidence            655

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.83  E-value=0.01  Score=40.52  Aligned_cols=27  Identities=11%  Similarity=0.306  Sum_probs=17.8

Q ss_pred             ccCCCccccCCCCccccCHHHHHHHHh
Q psy4796         187 RTDKKKFVCFACPYATQYACYIKTHVM  213 (274)
Q Consensus       187 ~~~~~~~~C~~C~~~f~~~~~l~~H~~  213 (274)
                      ..+...|.|..|++.|.+...+..|+.
T Consensus        88 ~~~~~~~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           88 DGEDRSKCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             SCCCTTTEETTTTEECSSHHHHHHHHT
T ss_pred             cCCCCCeEcCCCCCEeCCHHHHHHHHC
Confidence            344555677777777777777777764

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.79  E-value=0.00026  Score=47.73  Aligned_cols=27  Identities=33%  Similarity=0.507  Sum_probs=13.5

Q ss_pred             ccCCCCcccCcCccccCCchhHHHHHh
Q psy4796         215 HTGDKPFACSYCDYTCNQSSNLQTHLR  241 (274)
Q Consensus       215 h~~~~~~~C~~C~~~f~~~~~l~~H~~  241 (274)
                      |+|+++|.|..|++.|.+...|..|++
T Consensus        45 ~tGekpfyC~~C~K~F~~~~~L~~H~r   71 (124)
T 1zr9_A           45 LPGGGLHRCLACARYFIDSTNLKTHFR   71 (124)
T ss_dssp             SGGGGCSEETTTTEECSSHHHHHHHTT
T ss_pred             CCCCcceEcccCcchhCCHHHHHHHHh
Confidence            444445555555555555555555543

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.76  E-value=0.00068  Score=36.44  Aligned_cols=23  Identities=13%  Similarity=0.311  Sum_probs=13.2

Q ss_pred             CccccCCCCccccCHHHHHHHHh
Q psy4796         191 KKFVCFACPYATQYACYIKTHVM  213 (274)
Q Consensus       191 ~~~~C~~C~~~f~~~~~l~~H~~  213 (274)
                      .+|.|+.|+..|+....|+.|++
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            34556666666655555555554

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.64  E-value=0.00042  Score=46.67  Aligned_cols=32  Identities=19%  Similarity=0.123  Sum_probs=28.3

Q ss_pred             HHhhhCCCCceecCCCCccCCChhHHHHHHhh
Q psy4796         239 HLRIHKTEREYACGKCAYRTAALPDLKLHLKN  270 (274)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  270 (274)
                      +...|+|+++|.|..|++.|.+...|..|++.
T Consensus        41 ~ded~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           41 FDPDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SCSSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            34558899999999999999999999999865

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.45  E-value=0.003  Score=33.94  Aligned_cols=23  Identities=17%  Similarity=0.261  Sum_probs=19.9

Q ss_pred             CCeeeccccCCcchhhHHHHHhhh
Q psy4796          27 ADVTCLHCSLTTPCVMKDMIRHGR   50 (274)
Q Consensus        27 ~~~~C~~C~~~f~~~~~~l~~H~~   50 (274)
                      ..|.|+.|+..| +..+.|+.||+
T Consensus        11 ~~~~CPrCn~~f-~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQF-RVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCC-SSHHHHHHHHH
T ss_pred             CceeCCcccccc-cchHHHHhhhh
Confidence            568899999999 88888999987

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=96.32  E-value=0.0027  Score=31.97  Aligned_cols=26  Identities=19%  Similarity=0.432  Sum_probs=19.7

Q ss_pred             ceecCCCCccCCChhHHHHHHhhhcC
Q psy4796         248 EYACGKCAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       248 ~~~C~~C~~~f~~~~~l~~H~~~~H~  273 (274)
                      .|.||+|.+.|.+...|..|....|.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccc
Confidence            37788888888888888888777764

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.10  E-value=0.0065  Score=43.93  Aligned_cols=101  Identities=16%  Similarity=0.243  Sum_probs=66.9

Q ss_pred             eeccccCCcchhhHHHHHh-hhccccccccccCCcceecc--cccccccChHHHHHHHhhcCCCCcccCCCCCcccCChh
Q psy4796          30 TCLHCSLTTPCVMKDMIRH-GRLCEFNSVVTSAKLQFLCL--FCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQKV  106 (274)
Q Consensus        30 ~C~~C~~~f~~~~~~l~~H-~~~~~~~~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~  106 (274)
                      .|+.|...+ .....+..- +.       .........|+  -|+..+. ...+..|... -...+..|+.|+..+ .+.
T Consensus        55 ~CP~Cr~~~-~~~~~~~~~~~~-------~~i~~l~v~C~n~GC~~~~~-~~~l~~H~~~-C~~~~v~C~~C~~~~-~r~  123 (170)
T 3hcs_A           55 KCPVDNEIL-LENQLFPDNFAK-------REILSLMVKCPNEGCLHKME-LRHLEDHQAH-CEFALMDCPQCQRPF-QKF  123 (170)
T ss_dssp             BCTTTCCBC-CGGGCEECHHHH-------HHHHTSEEECCSTTCCCEEE-GGGHHHHHTT-CTTSEEECTTTCCEE-EGG
T ss_pred             CCCCCccCc-chhhhhhhHHHH-------HHHhhcccCCCCCCCCceec-HhHHHHHHhc-CCceeeECCCCChHH-HHH
Confidence            899998887 443211110 11       11123455674  4777654 4567788743 344677899999888 577


Q ss_pred             HHHHHHhhhcCCCCccCCCCCCccccHHHHHHHHHH
Q psy4796         107 VLQRHLLTHTGEKPFACHLCPYRASRKYYITAHLNS  142 (274)
Q Consensus       107 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  142 (274)
                      .|..|....-..+...|+.|+..+.. ..+..|...
T Consensus       124 ~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~~  158 (170)
T 3hcs_A          124 HINIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQN  158 (170)
T ss_dssp             GHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHHTT
T ss_pred             HHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHHHh
Confidence            78999988788888999999887754 466777755

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=93.55  E-value=0.048  Score=27.36  Aligned_cols=22  Identities=23%  Similarity=0.501  Sum_probs=13.9

Q ss_pred             cccCcCccccCCchhHHHHHhh
Q psy4796         221 FACSYCDYTCNQSSNLQTHLRI  242 (274)
Q Consensus       221 ~~C~~C~~~f~~~~~l~~H~~~  242 (274)
                      |.|++|.+.|.+...|..|...
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~   27 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEA   27 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHH
T ss_pred             cCCcHHHHHcCCHHHHHHHHHh
Confidence            5666666666666666666544

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=92.39  E-value=0.086  Score=25.52  Aligned_cols=25  Identities=20%  Similarity=0.448  Sum_probs=18.3

Q ss_pred             eecCCCCccCCChhHHHHHHhhhcC
Q psy4796         249 YACGKCAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       249 ~~C~~C~~~f~~~~~l~~H~~~~H~  273 (274)
                      -.|-.|.+.+++..+|..|++..|.
T Consensus        10 qhcrfckkkysdvknlikhire~hd   34 (37)
T 2elu_A           10 QHCRFCKKKYSDVKNLIKHIRDAHD   34 (37)
T ss_dssp             CEETTTTEECSSHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4577777887777778888776653

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=91.66  E-value=0.24  Score=24.95  Aligned_cols=25  Identities=20%  Similarity=0.236  Sum_probs=15.9

Q ss_pred             CcccCCCCCcccCChhHHHHHHhhh
Q psy4796          91 KPYKCPHCDHCFTQKVVLQRHLLTH  115 (274)
Q Consensus        91 ~~~~C~~C~~~f~~~~~l~~H~~~h  115 (274)
                      ..+.|..|+..|.+...+..|.+..
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk~Y   31 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQFY   31 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHHHT
T ss_pred             CcCeeccccceehhhHHHhhhheec
Confidence            3456666777777666666666543

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=91.33  E-value=0.051  Score=33.00  Aligned_cols=52  Identities=17%  Similarity=0.335  Sum_probs=37.7

Q ss_pred             ccCCCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHH
Q psy4796         187 RTDKKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHL  240 (274)
Q Consensus       187 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  240 (274)
                      +.....|.|..||..+.. ..+..|...-.+-..|.|.-|+..|.. ..++.|.
T Consensus         5 ~~~MV~F~C~~Cgd~lKK-~kv~~H~~~Cr~~~~~SCIDC~~~F~~-~~y~~Ht   56 (79)
T 1wjv_A            5 SSGMVFFTCNACGESVKK-IQVEKHVSNCRNCECLSCIDCGKDFWG-DDYKSHV   56 (79)
T ss_dssp             SCCCCEEEESSSCCEEET-THHHHHHHHCTTCCEEEETTTTEEEEG-GGTTTCC
T ss_pred             CCceeEEEcCCCCCeeec-ccchhHHhhCCCCCcEEecccCCeeCC-CCEeCEe
Confidence            344556889999988774 467888777776667899999999975 4455553

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=91.05  E-value=0.12  Score=32.15  Aligned_cols=26  Identities=23%  Similarity=0.470  Sum_probs=19.2

Q ss_pred             CcccCcCccccCCchhHHHHHhhhCCCCc
Q psy4796         220 PFACSYCDYTCNQSSNLQTHLRIHKTERE  248 (274)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  248 (274)
                      ...|.+||+.|.   .|++|+..+++..|
T Consensus        21 ~iiClecGK~fK---~LkRHL~~~hgltp   46 (87)
T 2jsp_A           21 HIVCLECGGSFK---SLKRHLTTHHSMTP   46 (87)
T ss_dssp             CEECTBTCCEES---BHHHHHHHTTCSCH
T ss_pred             ceEecccchhhH---HHHHHHHHccCCCH
Confidence            367888888877   47788888777665

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=90.62  E-value=0.096  Score=31.64  Aligned_cols=13  Identities=38%  Similarity=0.940  Sum_probs=8.5

Q ss_pred             cccCCCCCcccCC
Q psy4796          92 PYKCPHCDHCFTQ  104 (274)
Q Consensus        92 ~~~C~~C~~~f~~  104 (274)
                      .|+|+.|+..|--
T Consensus        51 ~FkCP~CgEEFyG   63 (95)
T 2k5c_A           51 VFKCPVCGEEFYG   63 (95)
T ss_dssp             EEECTTTCCEEET
T ss_pred             hhcCCCccHHHhc
Confidence            3677777776643

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=90.21  E-value=0.19  Score=23.90  Aligned_cols=22  Identities=27%  Similarity=0.899  Sum_probs=18.1

Q ss_pred             ceecCCCCccCCChhHHHHHHh
Q psy4796         248 EYACGKCAYRTAALPDLKLHLK  269 (274)
Q Consensus       248 ~~~C~~C~~~f~~~~~l~~H~~  269 (274)
                      .|.|++|....++...+..|..
T Consensus         3 k~~CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            3 DFCCPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             CEECTTSSCEESSHHHHHHHHH
T ss_pred             cccCccccccCcChHHHHHHHH
Confidence            3788999988888888888864

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=89.62  E-value=0.23  Score=26.57  Aligned_cols=13  Identities=23%  Similarity=0.560  Sum_probs=7.5

Q ss_pred             cccCcCccccCCc
Q psy4796         221 FACSYCDYTCNQS  233 (274)
Q Consensus       221 ~~C~~C~~~f~~~  233 (274)
                      |.|..||+.|+..
T Consensus         4 Y~C~rCg~~fs~~   16 (48)
T 4ayb_P            4 YRCGKCWKTFTDE   16 (48)
T ss_dssp             -CCCCTTTTCCCC
T ss_pred             EEeeccCCCccHH
Confidence            6666666666543

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=89.29  E-value=0.63  Score=28.15  Aligned_cols=47  Identities=21%  Similarity=0.411  Sum_probs=23.0

Q ss_pred             Ceee-ccccCCcchhhHHHHHhhhccccccccccCCcceecccccccccChHHHHHHH
Q psy4796          28 DVTC-LHCSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHL   84 (274)
Q Consensus        28 ~~~C-~~C~~~f~~~~~~l~~H~~~~~~~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   84 (274)
                      +..| ..|+..+  .+..|..|+.       ..-..+...|..|+..+. ...|..|.
T Consensus        16 ~v~C~~~C~~~v--~r~~l~~H~~-------~~C~~r~v~C~~C~~~~~-~~~l~~H~   63 (76)
T 2yuc_A           16 VIPCPNRCPMKL--SRRDLPAHLQ-------HDCPKRRLKCEFCGCDFS-GEAYESHE   63 (76)
T ss_dssp             CCBCTTCCSCBC--CSSSSTTTTT-------TSCTTSCCCCSSSCCCCC-HHHHHHTT
T ss_pred             ccCCCccccHHh--hHhHHHhhCH-------hhCCCcceECCCCCCccC-HHHHHHHH
Confidence            3455 3565555  4455555554       233344455556655554 23344443

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.32  E-value=0.18  Score=30.67  Aligned_cols=26  Identities=31%  Similarity=0.469  Sum_probs=16.8

Q ss_pred             ceecCCCCccCC-------ChhHHHHHHhhhcC
Q psy4796         248 EYACGKCAYRTA-------ALPDLKLHLKNMHL  273 (274)
Q Consensus       248 ~~~C~~C~~~f~-------~~~~l~~H~~~~H~  273 (274)
                      .-.|.+|++.+.       .-+.|.+|++..|.
T Consensus        28 ~A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H~   60 (76)
T 2djr_A           28 YATCRLCGRQVSRGPGVNVGTTALWKHLKSMHR   60 (76)
T ss_dssp             CEEESSSCCBCCCCSSCCSSSCHHHHHHHHTTH
T ss_pred             EEECCCCCCccCCCCCCCCchHHHHHHHHHHCH
Confidence            356666666665       24567788877774

>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=87.61  E-value=0.33  Score=28.22  Aligned_cols=18  Identities=22%  Similarity=0.552  Sum_probs=10.3

Q ss_pred             CCCCCCCCeeeccccCCc
Q psy4796          21 SPGPPPADVTCLHCSLTT   38 (274)
Q Consensus        21 ~~~~~~~~~~C~~C~~~f   38 (274)
                      +..+....|.|..|+..+
T Consensus        14 ~~~~~~v~Y~C~~Cg~~~   31 (63)
T 3h0g_L           14 PPRPATMIYLCADCGARN   31 (63)
T ss_dssp             -----CCCCBCSSSCCBC
T ss_pred             CCCCCCeEEECCCCCCee
Confidence            333445668888888888

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=87.53  E-value=0.67  Score=23.31  Aligned_cols=20  Identities=20%  Similarity=0.333  Sum_probs=9.3

Q ss_pred             cccCCCCccccCHHHHHHHH
Q psy4796         193 FVCFACPYATQYACYIKTHV  212 (274)
Q Consensus       193 ~~C~~C~~~f~~~~~l~~H~  212 (274)
                      +.|..|+..|.....+..|.
T Consensus         9 ~~C~~C~IsF~~l~ty~aHK   28 (36)
T 1fu9_A            9 KYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             SEETTTTEECSSHHHHHHHH
T ss_pred             CeeccccceehhhHHHhhhh
Confidence            44444444444444444443

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=87.13  E-value=0.38  Score=29.89  Aligned_cols=30  Identities=27%  Similarity=0.525  Sum_probs=22.0

Q ss_pred             CCCccccCCCCccccCHHHHHHHHhhccCCCCc
Q psy4796         189 DKKKFVCFACPYATQYACYIKTHVMTHTGDKPF  221 (274)
Q Consensus       189 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  221 (274)
                      ......|-+||+.|..   |..|+..++|-.|.
T Consensus        18 ~~d~iiClecGK~fK~---LkRHL~~~hgltpe   47 (87)
T 2jsp_A           18 QDDHIVCLECGGSFKS---LKRHLTTHHSMTPE   47 (87)
T ss_dssp             CSSCEECTBTCCEESB---HHHHHHHTTCSCHH
T ss_pred             CCCceEecccchhhHH---HHHHHHHccCCCHH
Confidence            3444788899998884   66888887777653

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=86.84  E-value=0.66  Score=22.44  Aligned_cols=24  Identities=13%  Similarity=0.117  Sum_probs=20.0

Q ss_pred             cccCCCCccccCHHHHHHHHhhcc
Q psy4796         193 FVCFACPYATQYACYIKTHVMTHT  216 (274)
Q Consensus       193 ~~C~~C~~~f~~~~~l~~H~~~h~  216 (274)
                      --|.+|.+.+.+..+|..|++.-+
T Consensus        10 qhcrfckkkysdvknlikhire~h   33 (37)
T 2elu_A           10 QHCRFCKKKYSDVKNLIKHIRDAH   33 (37)
T ss_dssp             CEETTTTEECSSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            358999999999999999988543

>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}

Probab=86.67  E-value=2  Score=23.74  Aligned_cols=47  Identities=21%  Similarity=0.482  Sum_probs=29.2

Q ss_pred             cccCcCccccCCchhHHHHHhhhCCCCceecCCCCc-cCCChhHHHHHHhh
Q psy4796         221 FACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAY-RTAALPDLKLHLKN  270 (274)
Q Consensus       221 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~-~f~~~~~l~~H~~~  270 (274)
                      ..|.+|.........|..|...-...   +||+|-. .-.+.+.|+.|.+.
T Consensus         4 mvC~~C~~ECET~kEl~~H~~sCp~g---qCPYC~~~~e~tesAlQaHfkv   51 (57)
T 2k9h_A            4 MVCDVCHHECETAKELESHRQSCING---QCPYCMTITEATESALQAHYSI   51 (57)
T ss_dssp             TBCTTTCCBCSSTTTHHHHHHHHTTT---BCTTTCCBCCSSHHHHHHHHTT
T ss_pred             chhhHHHhhhhhHHHHHHHhccCCCC---CCCcccCcCCcCHHHHHHHHHH
Confidence            45777777777777777777664333   3666654 23456667777654

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=86.54  E-value=0.48  Score=28.74  Aligned_cols=7  Identities=29%  Similarity=0.672  Sum_probs=2.6

Q ss_pred             ecccccc
Q psy4796          66 LCLFCSY   72 (274)
Q Consensus        66 ~C~~C~~   72 (274)
                      .|..||.
T Consensus        12 ~C~~Cgd   18 (79)
T 1wjv_A           12 TCNACGE   18 (79)
T ss_dssp             EESSSCC
T ss_pred             EcCCCCC
Confidence            3333333

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=85.99  E-value=0.8  Score=29.26  Aligned_cols=44  Identities=20%  Similarity=0.437  Sum_probs=24.6

Q ss_pred             CCccCCCCCCCCCCChhhhhhhccCCCCCcccCCCccccC---CCCccccCHHHHHHHHh
Q psy4796         157 PRRKCVHCSEPISSDMSEIIEHCLVCPNATRTDKKKFVCF---ACPYATQYACYIKTHVM  213 (274)
Q Consensus       157 ~~~~c~~c~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~C~---~C~~~f~~~~~l~~H~~  213 (274)
                      ..-.|+.|...+..             ...+..+..|.|+   .|.++|-+...|+.|+.
T Consensus        36 ~~k~Cp~C~~~V~r-------------Ve~~~~~~if~C~~~~~CkrtyLs~rdlqaHI~   82 (101)
T 3vk6_A           36 GDKMCPGCSDPVQR-------------IEQCTRGSLFMCSIVQGCKRTYLSQRDLQAHIN   82 (101)
T ss_dssp             TCCBCTTTCCBCSE-------------EEEEEGGGCCCCCCCCCCCCCCSSHHHHHHHHH
T ss_pred             cCCCCcCcCCeeee-------------eEEeccCCEEECCCCCCHHHHhcCHHHHHHHHH
Confidence            34456666666655             1122334556665   46666666666666665

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=85.47  E-value=0.43  Score=30.81  Aligned_cols=12  Identities=33%  Similarity=0.927  Sum_probs=7.1

Q ss_pred             CCcccCcCcccc
Q psy4796         219 KPFACSYCDYTC  230 (274)
Q Consensus       219 ~~~~C~~C~~~f  230 (274)
                      .||.|..||..|
T Consensus        66 ~p~~C~~CG~~F   77 (105)
T 2gmg_A           66 KPAQCRKCGFVF   77 (105)
T ss_dssp             CCCBBTTTCCBC
T ss_pred             ECcChhhCcCee
Confidence            356666666665

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=85.32  E-value=0.46  Score=26.36  Aligned_cols=21  Identities=14%  Similarity=0.213  Sum_probs=18.0

Q ss_pred             eeeccccCCcchhhHHHHHhhh
Q psy4796          29 VTCLHCSLTTPCVMKDMIRHGR   50 (274)
Q Consensus        29 ~~C~~C~~~f~~~~~~l~~H~~   50 (274)
                      -.|..|+..| .....+..|+.
T Consensus        14 ~eC~lC~vkY-s~r~slqDHIF   34 (55)
T 2yrk_A           14 PECTLCGVKY-SARLSIRDHIF   34 (55)
T ss_dssp             SCCTTTTCCC-CSSSCHHHHHT
T ss_pred             ccccccCccc-ccccchhhhhc
Confidence            5899999999 88888888875

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=84.56  E-value=0.52  Score=30.14  Aligned_cols=43  Identities=28%  Similarity=0.411  Sum_probs=22.2

Q ss_pred             cccCCCCccccCHHHHHHHHhhccCCCCcccC---cCccccCCchhHHHHHhh
Q psy4796         193 FVCFACPYATQYACYIKTHVMTHTGDKPFACS---YCDYTCNQSSNLQTHLRI  242 (274)
Q Consensus       193 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~---~C~~~f~~~~~l~~H~~~  242 (274)
                      -.|+.|...+.+..       .+..+..|.|.   -|.++|.+..+|+.|+..
T Consensus        38 k~Cp~C~~~V~rVe-------~~~~~~if~C~~~~~CkrtyLs~rdlqaHI~~   83 (101)
T 3vk6_A           38 KMCPGCSDPVQRIE-------QCTRGSLFMCSIVQGCKRTYLSQRDLQAHINH   83 (101)
T ss_dssp             CBCTTTCCBCSEEE-------EEEGGGCCCCCCCCCCCCCCSSHHHHHHHHHH
T ss_pred             CCCcCcCCeeeeeE-------EeccCCEEECCCCCCHHHHhcCHHHHHHHHHH
Confidence            34566655554331       12224445665   266666666666666554

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=83.26  E-value=0.67  Score=25.03  Aligned_cols=10  Identities=20%  Similarity=0.511  Sum_probs=4.9

Q ss_pred             eeeccccCCc
Q psy4796          29 VTCLHCSLTT   38 (274)
Q Consensus        29 ~~C~~C~~~f   38 (274)
                      |.|.+||..|
T Consensus         5 y~C~vCGyvy   14 (46)
T 6rxn_A            5 YVCNVCGYEY   14 (46)
T ss_dssp             EEETTTCCEE
T ss_pred             EECCCCCeEE
Confidence            4455555444

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=83.07  E-value=0.62  Score=30.07  Aligned_cols=33  Identities=18%  Similarity=0.363  Sum_probs=23.5

Q ss_pred             CCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCc
Q psy4796         190 KKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQS  233 (274)
Q Consensus       190 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  233 (274)
                      -.+|.|..||..|.           -...+|-.|+.|+......
T Consensus        65 v~p~~C~~CG~~F~-----------~~~~kPsrCP~CkSe~Ie~   97 (105)
T 2gmg_A           65 IKPAQCRKCGFVFK-----------AEINIPSRCPKCKSEWIEE   97 (105)
T ss_dssp             ECCCBBTTTCCBCC-----------CCSSCCSSCSSSCCCCBCC
T ss_pred             EECcChhhCcCeec-----------ccCCCCCCCcCCCCCccCC
Confidence            45689999999982           2335678899998765443

>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A

Probab=82.98  E-value=0.39  Score=33.05  Aligned_cols=15  Identities=20%  Similarity=0.350  Sum_probs=9.9

Q ss_pred             ceecccccccccChH
Q psy4796          64 QFLCLFCSYVATARI   78 (274)
Q Consensus        64 ~~~C~~C~~~f~~~~   78 (274)
                      .++|+-|++.|....
T Consensus        27 ~lr~pCC~k~y~Cr~   41 (143)
T 2dkt_A           27 LLKAPCCDKLYTCRL   41 (143)
T ss_dssp             EEEETTTTEEESSHH
T ss_pred             eEECCCCCCccchhh
Confidence            367777887766543

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=82.03  E-value=0.69  Score=25.65  Aligned_cols=20  Identities=20%  Similarity=0.446  Sum_probs=15.6

Q ss_pred             eecCCCCccCCChhHHHHHH
Q psy4796         249 YACGKCAYRTAALPDLKLHL  268 (274)
Q Consensus       249 ~~C~~C~~~f~~~~~l~~H~  268 (274)
                      -.|.+|+..|..+-+|..|+
T Consensus        14 ~eC~lC~vkYs~r~slqDHI   33 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHI   33 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHH
T ss_pred             ccccccCcccccccchhhhh
Confidence            47888888888887777776

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=81.04  E-value=1.2  Score=29.80  Aligned_cols=27  Identities=15%  Similarity=0.445  Sum_probs=16.5

Q ss_pred             CCcccCcCccccCCchhHHHHHhhhCC
Q psy4796         219 KPFACSYCDYTCNQSSNLQTHLRIHKT  245 (274)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h~~  245 (274)
                      .+..|-.|...|.+...+..|++..++
T Consensus        14 ~~~~CLFCd~~~~s~~~~l~H~k~~H~   40 (121)
T 1wir_A           14 QHTPCLFCDRLFASAEETFSHCKLEHQ   40 (121)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHSSC
T ss_pred             CceeEecCCCcccCHHHHHHHHHHhcC
Confidence            456666666666666666666665443

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=80.90  E-value=0.6  Score=28.24  Aligned_cols=48  Identities=15%  Similarity=0.436  Sum_probs=28.0

Q ss_pred             Ccccc-CCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHH
Q psy4796         191 KKFVC-FACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHL  240 (274)
Q Consensus       191 ~~~~C-~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  240 (274)
                      .+..| ..|+..+. +..|..|+...-..++..|..|+..|.. ..|..|.
T Consensus        15 ~~v~C~~~C~~~v~-r~~l~~H~~~~C~~r~v~C~~C~~~~~~-~~l~~H~   63 (76)
T 2yuc_A           15 NVIPCPNRCPMKLS-RRDLPAHLQHDCPKRRLKCEFCGCDFSG-EAYESHE   63 (76)
T ss_dssp             SCCBCTTCCSCBCC-SSSSTTTTTTSCTTSCCCCSSSCCCCCH-HHHHHTT
T ss_pred             cccCCCccccHHhh-HhHHHhhCHhhCCCcceECCCCCCccCH-HHHHHHH
Confidence            44567 46776655 3455666654445566777777776643 3455554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	274
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	4e-09
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	1e-05
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	2e-08
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	7e-08
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	0.001
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	4e-08
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	4e-07
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.002
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	5e-08
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	1e-07
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	2e-04
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	6e-08
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	1e-06
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	4e-04
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	8e-08
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	3e-05
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	1e-07
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	1e-05
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	0.002
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	2e-07
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	3e-05
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	8e-07
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	4e-06
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	6e-06
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	0.002
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	7e-06
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	1e-04
d1sp2a_	31	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	7e-06
d1sp2a_	31	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	6e-04
d1ncsa_	47	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	2e-05
d1ncsa_	47	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	4e-04
d2glia3	30	g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo	4e-05
d2glia3	30	g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo	0.002
d1ubdc3	30	g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger	2e-04
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	3e-04
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	6e-04
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	8e-04
d1zfda_	32	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	7e-04
d1zfda_	32	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	0.002
d1a1ia1	29	g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus)	8e-04
d1a1ia1	29	g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus)	0.003
d1x6ea2	26	g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (	8e-04
d1x6ea2	26	g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (	0.002

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (118), Expect = 4e-09
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 91  KPYKCPHCDHCFTQKVVLQRHL-LTHTGEKPFACHL 125
           KPY C  C   F++   L  H+   HT E+P  C +
Sbjct: 4   KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (93), Expect = 1e-05
 Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 216 TGDKPFACSYCDYTCNQSSNLQTHLR-IHKTEREYAC 251
           +  KP+ C  C    ++  +L  H++ +H +ER + C
Sbjct: 1   SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (113), Expect = 2e-08
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 87  HLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGE 118
           H G KPY C  C   F++  +L +H   HTGE
Sbjct: 2   HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE 33

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (108), Expect = 7e-08
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 215 HTGDKPFACSYCDYTCNQSSNLQTHLRIHKTE 246
           H+G+KP+ C  C    ++SS L  H R+H  E
Sbjct: 2   HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE 33

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (77), Expect = 0.001
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 115 HTGEKPFACHLCPYRASRKYYITAH 139
           H+GEKP+ C  C    SR   +  H
Sbjct: 2   HSGEKPYGCVECGKAFSRSSILVQH 26

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (110), Expect = 4e-08
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTE 246
           THTG+KP+ACS+CD T  Q   L  H + +   
Sbjct: 2   THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP 34

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (102), Expect = 4e-07
 Identities = 14/33 (42%), Positives = 16/33 (48%)

Query: 87  HLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
           H G KPY C HCD  F QK +L  H   +    
Sbjct: 3   HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (76), Expect = 0.002
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 114 THTGEKPFACHLCPYRASRKYYITAH 139
           THTGEKP+AC  C     +K  +  H
Sbjct: 2   THTGEKPYACSHCDKTFRQKQLLDMH 27

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (109), Expect = 5e-08
 Identities = 12/36 (33%), Positives = 15/36 (41%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGE 118
                   + YKC  C   F+    L +H  THTGE
Sbjct: 3   SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE 38

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (107), Expect = 1e-07
 Identities = 9/36 (25%), Positives = 14/36 (38%)

Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTE 246
                   + + C  C  + + SS+L  H R H  E
Sbjct: 3   SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE 38

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (82), Expect = 2e-04
 Identities = 5/30 (16%), Positives = 9/30 (30%)

Query: 110 RHLLTHTGEKPFACHLCPYRASRKYYITAH 139
           R        + + C  C    S    ++ H
Sbjct: 2   RSEWQQRERRRYKCDECGKSFSHSSDLSKH 31

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (109), Expect = 6e-08
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTE 246
           TH+G+KP+ C  C     QS  ++ H+    TE
Sbjct: 2   THSGEKPYECYICHARFTQSGTMKMHILQKHTE 34

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (100), Expect = 1e-06
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 87  HLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
           H G KPY+C  C   FTQ   ++ H+L    E 
Sbjct: 3   HSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (81), Expect = 4e-04
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 114 THTGEKPFACHLCPYRASRKYYITAHL 140
           TH+GEKP+ C++C  R ++   +  H+
Sbjct: 2   THSGEKPYECYICHARFTQSGTMKMHI 28

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 45.3 bits (108), Expect = 8e-08
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 91  KPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
           + + C  C   F ++  L+RH  +HT EK
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 38.0 bits (89), Expect = 3e-05
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 219 KPFACSYCDYTCNQSSNLQTHLRIHKTER 247
           + F C  C     +  +L+ H R H  E+
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.7 bits (106), Expect = 1e-07
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
                TG KPF C  CD + ++S +L  H + H
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (92), Expect = 1e-05
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 83  HLSSHLGWKPYKCPHCDHCFTQKVVLQRHLLTHTG 117
                 G KP++CP CD  F++   L  H   H  
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.8 bits (75), Expect = 0.002
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 111 HLLTHTGEKPFACHLCPYRASRKYYITAH 139
                TG KPF C  C    SR  ++  H
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALH 30

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (104), Expect = 2e-07
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 91  KPYKCPHCDHCFTQKVVLQRHLLTHTGEK 119
           K + CP C   F +   L +H+ TH  +K
Sbjct: 1   KKFACPECPKRFMRSDHLSKHIKTHQNKK 29

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (88), Expect = 3e-05
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 219 KPFACSYCDYTCNQSSNLQTHLRIHKTER 247
           K FAC  C     +S +L  H++ H+ ++
Sbjct: 1   KKFACPECPKRFMRSDHLSKHIKTHQNKK 29

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (100), Expect = 8e-07
 Identities = 12/32 (37%), Positives = 14/32 (43%)

Query: 87  HLGWKPYKCPHCDHCFTQKVVLQRHLLTHTGE 118
             G +P+ C  C   FT K    RHL  HT  
Sbjct: 2   SSGKRPFVCRICLSAFTTKANCARHLKVHTDT 33

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (95), Expect = 4e-06
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 215 HTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
            +G +PF C  C       +N   HL++H
Sbjct: 2   SSGKRPFVCRICLSAFTTKANCARHLKVH 30

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (94), Expect = 6e-06
 Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)

Query: 93  YKCPH--CDHCFTQKVVLQRHLLTHTGEKPFAC 123
           + CP   C   F  K  L+ H+  H+  + + C
Sbjct: 2   FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (76), Expect = 0.002
 Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 221 FACSY--CDYTCNQSSNLQTHLRIHKTEREYAC 251
           F+C    C  + N   +L+ H+++H   R+Y C
Sbjct: 2   FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.9 bits (94), Expect = 7e-06
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 91  KPYKCPHCDHCFTQKVVLQRHLLTHTG 117
           KP++C  C   F++   L  H+ THTG
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTG 28

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.0 bits (84), Expect = 1e-04
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 219 KPFACSYCDYTCNQSSNLQTHLRIH 243
           KPF C  C    ++S +L TH+R H
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTH 26

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (93), Expect = 7e-06
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 91  KPYKCPH--CDHCFTQKVVLQRHLLTHTGEK 119
           +P+ C    C   FT+   LQRH  THTGEK
Sbjct: 1   RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (79), Expect = 6e-04
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 219 KPFACSY--CDYTCNQSSNLQTHLRIHKTER 247
           +PF C++  C     +S  LQ H R H  E+
Sbjct: 1   RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.8 bits (90), Expect = 2e-05
 Identities = 6/35 (17%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 87  HLGWKPYKCPHCD--HCFTQKVVLQRHLLTHTGEK 119
            +  K ++C        F ++  ++ H+ TH  ++
Sbjct: 13  EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.3 bits (81), Expect = 4e-04
 Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 211 HVMTHTGDKPFACSYCD--YTCNQSSNLQTHLRIHKTER 247
             +    DK F C +     T  +  N+++H++ H  +R
Sbjct: 9   KYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (88), Expect = 4e-05
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 91  KPYKCPH--CDHCFTQKVVLQRHLLTHTGE 118
           KP+KC    C   +++   L+ HL +HTGE
Sbjct: 1   KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (75), Expect = 0.002
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 219 KPFACSY--CDYTCNQSSNLQTHLRIHKTE 246
           KP  C++  C  + ++  NL+THLR H  E
Sbjct: 1   KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (82), Expect = 2e-04
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 91  KPYKCPH--CDHCFTQKVVLQRHLLTHTGE 118
           KP++C    C   F+    L+ H+  HTG+
Sbjct: 1   KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (82), Expect = 3e-04
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 91  KPYKCPHCDHCFTQKVVLQRHLLTHTGEKPFACHLCPYRASRKYYITAHL 140
           K Y C  C   FT K    RH+  H G +P+ C +C  +   K+++  H+
Sbjct: 2   KLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 6e-04
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 191 KKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH 243
           K + C  C  +  +      H+  H G +P+ C  C        +L  H++IH
Sbjct: 2   KLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 8e-04
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 218 DKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLK 269
           DK + C  C  +    S    H+ +H   R Y CG C  +      L  H+K
Sbjct: 1   DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 51

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 32

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.2 bits (79), Expect = 7e-04
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 91  KPYKCPH--CDHCFTQKVVLQRHLLTHTGE 118
           +PY C H  CD  F +   L RH  +H  +
Sbjct: 2   RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 32

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 32.7 bits (75), Expect = 0.002
 Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 218 DKPFACSY--CDYTCNQSSNLQTHLRIH 243
           D+P++C +  CD    ++ +L  H + H
Sbjct: 1   DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.8 bits (78), Expect = 8e-04
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 91  KPYKCPH--CDHCFTQKVVLQRHLLTHTG 117
           +PY CP   CD  F++   L RH+  HTG
Sbjct: 1   RPYACPVESCDRRFSRSADLTRHIRIHTG 29

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.3 bits (74), Expect = 0.003
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)

Query: 219 KPFACSY--CDYTCNQSSNLQTHLRIH 243
           +P+AC    CD   ++S++L  H+RIH
Sbjct: 1   RPYACPVESCDRRFSRSADLTRHIRIH 27

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (78), Expect = 8e-04
 Identities = 12/26 (46%), Positives = 13/26 (50%)

Query: 91  KPYKCPHCDHCFTQKVVLQRHLLTHT 116
           KPYKC  C   F+Q   L  H   HT
Sbjct: 1   KPYKCLECGKAFSQNSGLINHQRIHT 26

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.9 bits (76), Expect = 0.002
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 219 KPFACSYCDYTCNQSSNLQTHLRIH 243
           KP+ C  C    +Q+S L  H RIH
Sbjct: 1   KPYKCLECGKAFSQNSGLINHQRIH 25

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	274
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.72
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.68
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.38
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.37
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.33
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.32
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.31
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.29
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.27
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.26
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.25
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.21
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.21
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.21
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.15
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.13
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.12
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.11
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.1
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.08
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.07
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.03
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.03
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.01
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.98
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.98
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.91
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.9
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.89
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.89
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.86
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.82
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.77
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.7
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.68
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.61
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.59
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.58
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.57
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.45
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.44
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.37
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.37
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.36
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.31
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.29
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.24
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.22
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.2
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.12
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.11
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.05
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.04
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.02
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.92
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.9
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.88
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.84
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.83
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.81
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.74
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.72
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.67
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.65
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.65
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.61
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.61
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.59
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.53
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.52
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.51
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.49
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.43
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.4
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.35
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.34
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.3
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.25
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.24
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	97.23
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.2
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.14
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.01
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.92
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.91
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.84
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.76
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.55
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.46
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.41
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.4
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.35
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.3
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.29
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.26
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	96.21
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.04
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.78
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.35
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.99
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.8
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	94.58
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	94.45
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	94.22
d1y0jb1	36	U-shaped transcription factor, different fingers {	94.18
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.16
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	94.12
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	93.97
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	93.84
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	93.78
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	93.7
d1y0jb1	36	U-shaped transcription factor, different fingers {	93.58
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	93.33
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	92.97
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	92.85
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	92.69
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	92.28
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	91.71
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	91.62
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	89.31
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	89.31
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	88.53
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	87.77
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	87.53
d1wjpa1	42	Zinc finger protein 295, ZNF295 {Human (Homo sapie	87.21
d2dkta1	74	RING finger and CHY zinc finger domain-containing	85.31
d1fu9a_	36	U-shaped transcription factor, different fingers {	85.28
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	84.58
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	83.35
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	82.76
d1x3ca1	61	Zinc finger protein 292, ZNF292 {Human (Homo sapie	82.24
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	81.17
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	80.51

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.3e-18  Score=98.95  Aligned_cols=53  Identities=28%  Similarity=0.545  Sum_probs=40.5

Q ss_pred             CCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCccCCChhHHHHHHhhh
Q psy4796         218 DKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYRTAALPDLKLHLKNM  271 (274)
Q Consensus       218 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  271 (274)
                      ||||.| .||+.|....+|.+|+++|++++||.|++|++.|...+.|..|++.|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            467777 47777777777777777777777777777777777777777777654

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.7e-17  Score=95.23  Aligned_cols=53  Identities=25%  Similarity=0.559  Sum_probs=51.0

Q ss_pred             CCccccCCCCccccCHHHHHHHHhhccCCCCcccCcCccccCCchhHHHHHhhh
Q psy4796         190 KKKFVCFACPYATQYACYIKTHVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIH  243 (274)
Q Consensus       190 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  243 (274)
                      +++|.| .||+.|.....|..|+++|++++||.|.+||+.|...+.|.+|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            578999 59999999999999999999999999999999999999999999987

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.3e-13  Score=71.68  Aligned_cols=37  Identities=27%  Similarity=0.663  Sum_probs=28.4

Q ss_pred             CCCCcccCcCccccCCchhHHHHHh-hhCCCCceecCC
Q psy4796         217 GDKPFACSYCDYTCNQSSNLQTHLR-IHKTEREYACGK  253 (274)
Q Consensus       217 ~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~  253 (274)
                      .+|||.|.+||+.|...++|.+|++ +|++++||+|.+
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            3677888888888888888888875 588888888764

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.6e-14  Score=73.63  Aligned_cols=36  Identities=19%  Similarity=0.317  Sum_probs=23.8

Q ss_pred             HHhhhCCCCceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         239 HLRIHKTEREYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      |+++|++++||.|++||+.|...++|..|++.|+||
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            556666666666666666666666666666666665

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.4e-13  Score=71.78  Aligned_cols=37  Identities=24%  Similarity=0.470  Sum_probs=28.9

Q ss_pred             HHHhhccCCCCcccCcCccccCCchhHHHHHhhhCCC
Q psy4796         210 THVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHKTE  246 (274)
Q Consensus       210 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  246 (274)
                      +|+++|++++||.|.+||+.|...++|.+|+++|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            3667788888888888888888888888888888765

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=5.5e-13  Score=66.46  Aligned_cols=32  Identities=22%  Similarity=0.288  Sum_probs=18.6

Q ss_pred             hCCCCceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         243 HKTEREYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       243 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      |++++||.|.+|++.|..+++|..|++.|.||
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            55555555555555555555555555555554

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=4.7e-13  Score=66.70  Aligned_cols=33  Identities=39%  Similarity=0.778  Sum_probs=28.6

Q ss_pred             hccCCCCcccCcCccccCCchhHHHHHhhhCCC
Q psy4796         214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTE  246 (274)
Q Consensus       214 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  246 (274)
                      +|++++||.|.+||++|...+.|.+|+++|+++
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            478889999999999999999999999988875

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=7.6e-13  Score=67.90  Aligned_cols=33  Identities=45%  Similarity=0.775  Sum_probs=18.0

Q ss_pred             hccCCCCcccCcCccccCCchhHHHHHhhhCCC
Q psy4796         214 THTGDKPFACSYCDYTCNQSSNLQTHLRIHKTE  246 (274)
Q Consensus       214 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  246 (274)
                      +|+|++||.|.+||+.|...+.|.+|+++|+++
T Consensus         2 ~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            455555555555555555555555555555443

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1e-12  Score=67.28  Aligned_cols=32  Identities=28%  Similarity=0.528  Sum_probs=20.6

Q ss_pred             hhCCCCceecCCCCccCCChhHHHHHHhhhcC
Q psy4796         242 IHKTEREYACGKCAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       242 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  273 (274)
                      +|+|++||.|++|++.|..+++|.+|++.+|+
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcccccC
Confidence            46666666666666666666666666665554

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.5e-12  Score=66.77  Aligned_cols=34  Identities=32%  Similarity=0.537  Sum_probs=30.1

Q ss_pred             hhhCCCCceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         241 RIHKTEREYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       241 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      |+|++++||+|.+|++.|..++.|..|++.||++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            5789999999999999999999999999988875

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=9.5e-13  Score=68.03  Aligned_cols=34  Identities=35%  Similarity=0.602  Sum_probs=20.6

Q ss_pred             HHhhccCCCCcccCcCccccCCchhHHHHHhhhC
Q psy4796         211 HVMTHTGDKPFACSYCDYTCNQSSNLQTHLRIHK  244 (274)
Q Consensus       211 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  244 (274)
                      |.+.|++++||.|.+|++.|..+++|.+|+++|.
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            3455666666666666666666666666666554

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=1.8e-12  Score=66.99  Aligned_cols=34  Identities=21%  Similarity=0.293  Sum_probs=31.9

Q ss_pred             HHhhhCCCCceecCCCCccCCChhHHHHHHhhhc
Q psy4796         239 HLRIHKTEREYACGKCAYRTAALPDLKLHLKNMH  272 (274)
Q Consensus       239 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H  272 (274)
                      |.++|++++||.|++|++.|..+++|.+|++.|-
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            6789999999999999999999999999998874

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=3.7e-12  Score=64.33  Aligned_cols=32  Identities=28%  Similarity=0.700  Sum_probs=22.3

Q ss_pred             ccCCCCcccCcCccccCCchhHHHHHhhhCCC
Q psy4796         215 HTGDKPFACSYCDYTCNQSSNLQTHLRIHKTE  246 (274)
Q Consensus       215 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  246 (274)
                      |+|++||.|.+|++.|..+++|++|+++|++.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            56677777777777777777777777777654

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=5.8e-12  Score=65.32  Aligned_cols=37  Identities=22%  Similarity=0.527  Sum_probs=34.1

Q ss_pred             CCCccccCCCCccccCHHHHHHHHh-hccCCCCcccCc
Q psy4796         189 DKKKFVCFACPYATQYACYIKTHVM-THTGDKPFACSY  225 (274)
Q Consensus       189 ~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~  225 (274)
                      .++||.|..||+.|...+.|..|++ +|++++||.|.+
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            4689999999999999999999986 799999999974

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.15  E-value=9.4e-12  Score=60.11  Aligned_cols=29  Identities=28%  Similarity=0.692  Sum_probs=16.5

Q ss_pred             CCcccCcCccccCCchhHHHHHhhhCCCC
Q psy4796         219 KPFACSYCDYTCNQSSNLQTHLRIHKTER  247 (274)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  247 (274)
                      +||.|++|++.|...+.|++|+++|+|++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            35555555555555555555555555543

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.6e-11  Score=59.16  Aligned_cols=29  Identities=31%  Similarity=0.681  Sum_probs=17.3

Q ss_pred             CCcccCcCccccCCchhHHHHHhhhCCCC
Q psy4796         219 KPFACSYCDYTCNQSSNLQTHLRIHKTER  247 (274)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  247 (274)
                      |||.|.+|++.|...++|.+|+++|++++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            45666666666666666666666665553

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=2.2e-11  Score=61.41  Aligned_cols=32  Identities=19%  Similarity=0.256  Sum_probs=29.7

Q ss_pred             hCCCCceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         243 HKTEREYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       243 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      |+|++||+|.+|++.|..+++|.+|++.|..+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            78999999999999999999999999988653

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=1.1e-11  Score=59.03  Aligned_cols=26  Identities=42%  Similarity=0.851  Sum_probs=11.6

Q ss_pred             CCcccCcCccccCCchhHHHHHhhhC
Q psy4796         219 KPFACSYCDYTCNQSSNLQTHLRIHK  244 (274)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h~  244 (274)
                      |||.|.+|++.|...+.|.+|+++|+
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             cCccCCCCcCEecccccccccCCCcc
Confidence            34444444444444444444444443

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.8e-11  Score=62.54  Aligned_cols=32  Identities=31%  Similarity=0.698  Sum_probs=26.3

Q ss_pred             hhccCCCCcccCcCccccCCchhHHHHHhhhC
Q psy4796         213 MTHTGDKPFACSYCDYTCNQSSNLQTHLRIHK  244 (274)
Q Consensus       213 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  244 (274)
                      ++|+|++||.|++|++.|...++|++|++.++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H   32 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKH   32 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHccccc
Confidence            46888999999999999999999999976543

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=2.6e-11  Score=57.76  Aligned_cols=28  Identities=14%  Similarity=0.373  Sum_probs=26.8

Q ss_pred             CCceecCCCCccCCChhHHHHHHhhhcC
Q psy4796         246 EREYACGKCAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       246 ~~~~~C~~C~~~f~~~~~l~~H~~~~H~  273 (274)
                      ++||+|++|++.|..++.|.+|++.|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6899999999999999999999999986

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.07  E-value=4e-11  Score=57.84  Aligned_cols=28  Identities=25%  Similarity=0.406  Sum_probs=27.1

Q ss_pred             CceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         247 REYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       247 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      +||.|++|++.|...+.|.+|++.|+||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSS
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCC
Confidence            6899999999999999999999999997

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=4.1e-11  Score=60.96  Aligned_cols=32  Identities=31%  Similarity=0.842  Sum_probs=20.8

Q ss_pred             cccCc--CccccCCchhHHHHHhhhCCCCceecC
Q psy4796         221 FACSY--CDYTCNQSSNLQTHLRIHKTEREYACG  252 (274)
Q Consensus       221 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~  252 (274)
                      |.|+.  |++.|..+..|++|+++|++++||.|.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            55654  666666666666666666666666664

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=7.9e-11  Score=56.66  Aligned_cols=28  Identities=25%  Similarity=0.481  Sum_probs=27.0

Q ss_pred             CceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         247 REYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       247 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      +||.|++|++.|..++.|.+|++.|.||
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCc
Confidence            6899999999999999999999999997

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.01  E-value=2.5e-11  Score=65.96  Aligned_cols=33  Identities=30%  Similarity=0.702  Sum_probs=19.6

Q ss_pred             ccCCCCcccCc--CccccCCchhHHHHHhhhCCCC
Q psy4796         215 HTGDKPFACSY--CDYTCNQSSNLQTHLRIHKTER  247 (274)
Q Consensus       215 h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~  247 (274)
                      |++++||.|.+  |++.|...++|.+|+++|++++
T Consensus        13 h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            55666666654  6666666666666666665553

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.98  E-value=2.3e-11  Score=66.09  Aligned_cols=41  Identities=7%  Similarity=0.241  Sum_probs=36.6

Q ss_pred             chhHHHHHhhhCCCCceecCC--CCccCCChhHHHHHHhhhcCC
Q psy4796         233 SSNLQTHLRIHKTEREYACGK--CAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       233 ~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      +..|.+|+. |.+++||.|.+  |++.|...+.|.+|++.|.||
T Consensus         4 ~~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htge   46 (47)
T d1ncsa_           4 RGSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             CSSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             cchhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCC
Confidence            345667775 99999999987  999999999999999999997

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=7.6e-11  Score=54.59  Aligned_cols=24  Identities=42%  Similarity=0.793  Sum_probs=11.7

Q ss_pred             CcccCcCccccCCchhHHHHHhhh
Q psy4796         220 PFACSYCDYTCNQSSNLQTHLRIH  243 (274)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~h  243 (274)
                      ||.|.+||+.|...+.|.+|+++|
T Consensus         2 Py~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCccCC
Confidence            444444444444444444444444

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.6e-10  Score=52.73  Aligned_cols=26  Identities=19%  Similarity=0.322  Sum_probs=24.5

Q ss_pred             CceecCCCCccCCChhHHHHHHhhhc
Q psy4796         247 REYACGKCAYRTAALPDLKLHLKNMH  272 (274)
Q Consensus       247 ~~~~C~~C~~~f~~~~~l~~H~~~~H  272 (274)
                      +||+|.+||++|...+.|.+|++.|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            69999999999999999999999874

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=4e-10  Score=57.20  Aligned_cols=32  Identities=22%  Similarity=0.596  Sum_probs=30.1

Q ss_pred             cccCC--CCccccCHHHHHHHHhhccCCCCcccC
Q psy4796         193 FVCFA--CPYATQYACYIKTHVMTHTGDKPFACS  224 (274)
Q Consensus       193 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~  224 (274)
                      |.|+.  ||+.|...+.|..|+++|++++||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            67875  999999999999999999999999996

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=4.8e-10  Score=54.18  Aligned_cols=27  Identities=26%  Similarity=0.343  Sum_probs=12.5

Q ss_pred             ceecCC--CCccCCChhHHHHHHhhhcCC
Q psy4796         248 EYACGK--CAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       248 ~~~C~~--C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      ||+|++  |++.|...+.|.+|++.|.||
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            444444  444444444444444444443

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=5.2e-10  Score=54.06  Aligned_cols=28  Identities=43%  Similarity=0.860  Sum_probs=26.6

Q ss_pred             CCcccCc--CccccCCchhHHHHHhhhCCC
Q psy4796         219 KPFACSY--CDYTCNQSSNLQTHLRIHKTE  246 (274)
Q Consensus       219 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~  246 (274)
                      |||.|++  |++.|...++|++|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            6899988  999999999999999999986

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=6e-10  Score=53.96  Aligned_cols=28  Identities=18%  Similarity=0.301  Sum_probs=17.0

Q ss_pred             CceecCC--CCccCCChhHHHHHHhhhcCC
Q psy4796         247 REYACGK--CAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       247 ~~~~C~~--C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      +||.|++  |++.|...+.|.+|++.|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            4566655  666666666666666666655

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=6.3e-10  Score=53.88  Aligned_cols=28  Identities=43%  Similarity=0.918  Sum_probs=20.0

Q ss_pred             CCcccCc--CccccCCchhHHHHHhhhCCC
Q psy4796         219 KPFACSY--CDYTCNQSSNLQTHLRIHKTE  246 (274)
Q Consensus       219 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~  246 (274)
                      |||.|++  |++.|...++|++|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            4677765  777777777777777777664

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.3e-09  Score=52.36  Aligned_cols=28  Identities=43%  Similarity=0.888  Sum_probs=15.0

Q ss_pred             CCcccC--cCccccCCchhHHHHHhhhCCC
Q psy4796         219 KPFACS--YCDYTCNQSSNLQTHLRIHKTE  246 (274)
Q Consensus       219 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~  246 (274)
                      +||.|+  .|++.|...++|++|+++|+++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccccc
Confidence            345553  3555555555555555555554

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=6.7e-09  Score=50.86  Aligned_cols=28  Identities=29%  Similarity=0.729  Sum_probs=17.9

Q ss_pred             CCCcccCc--CccccCCchhHHHHHhhhCC
Q psy4796         218 DKPFACSY--CDYTCNQSSNLQTHLRIHKT  245 (274)
Q Consensus       218 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~  245 (274)
                      ++||.|.+  |++.|+..++|.+|+++|..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            45666655  66666666666666666654

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=6.3e-09  Score=50.74  Aligned_cols=28  Identities=21%  Similarity=0.369  Sum_probs=26.1

Q ss_pred             CceecC--CCCccCCChhHHHHHHhhhcCC
Q psy4796         247 REYACG--KCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       247 ~~~~C~--~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      +||.|+  .|++.|...++|.+|++.|.||
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccccc
Confidence            689996  5999999999999999999987

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.61  E-value=5.5e-09  Score=49.89  Aligned_cols=19  Identities=26%  Similarity=0.427  Sum_probs=8.2

Q ss_pred             CCccCCChhHHHHHHhhhc
Q psy4796         254 CAYRTAALPDLKLHLKNMH  272 (274)
Q Consensus       254 C~~~f~~~~~l~~H~~~~H  272 (274)
                      |++.|...+.|.+|++.|.
T Consensus        10 C~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1          10 CDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CCCEESSHHHHHHHTHHHH
T ss_pred             CCcEECchhHhhhhcCccC
Confidence            4444444444444444443

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=1.9e-08  Score=49.18  Aligned_cols=29  Identities=28%  Similarity=0.427  Sum_probs=26.6

Q ss_pred             CCceecCC--CCccCCChhHHHHHHhhhcCC
Q psy4796         246 EREYACGK--CAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       246 ~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      ++||.|++  |++.|...++|.+|++.|.++
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            58999988  999999999999999999764

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.1e-08  Score=48.17  Aligned_cols=25  Identities=36%  Similarity=0.963  Sum_probs=14.6

Q ss_pred             CCcccCc--CccccCCchhHHHHHhhh
Q psy4796         219 KPFACSY--CDYTCNQSSNLQTHLRIH  243 (274)
Q Consensus       219 ~~~~C~~--C~~~f~~~~~l~~H~~~h  243 (274)
                      +||.|++  |++.|...++|++|+++|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            3555654  666666666666666555

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=1.1e-08  Score=48.82  Aligned_cols=27  Identities=41%  Similarity=0.940  Sum_probs=25.2

Q ss_pred             CCcccCc--CccccCCchhHHHHHhhhCC
Q psy4796         219 KPFACSY--CDYTCNQSSNLQTHLRIHKT  245 (274)
Q Consensus       219 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~  245 (274)
                      |||.|.+  |++.|...++|.+|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6899977  99999999999999999975

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=3.3e-08  Score=46.53  Aligned_cols=26  Identities=31%  Similarity=0.525  Sum_probs=24.2

Q ss_pred             CceecCC--CCccCCChhHHHHHHhhhc
Q psy4796         247 REYACGK--CAYRTAALPDLKLHLKNMH  272 (274)
Q Consensus       247 ~~~~C~~--C~~~f~~~~~l~~H~~~~H  272 (274)
                      +||+|+.  |++.|...++|.+|++.|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6899988  9999999999999999884

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=5.6e-08  Score=43.89  Aligned_cols=27  Identities=37%  Similarity=0.771  Sum_probs=20.1

Q ss_pred             CCCcccCcCccccCCchhHHHHHhhhC
Q psy4796         218 DKPFACSYCDYTCNQSSNLQTHLRIHK  244 (274)
Q Consensus       218 ~~~~~C~~C~~~f~~~~~l~~H~~~h~  244 (274)
                      ++||.|.+||+.|...+..++|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            467777777777777777777777764

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.5e-07  Score=44.15  Aligned_cols=30  Identities=23%  Similarity=0.601  Sum_probs=21.7

Q ss_pred             ccccCCCCccccCHHHHHHHHhhccCCCCc
Q psy4796         192 KFVCFACPYATQYACYIKTHVMTHTGDKPF  221 (274)
Q Consensus       192 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  221 (274)
                      ...|..||+.|++...|.+|...|.+++||
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            356777777777777777777777777776

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.1e-07  Score=41.48  Aligned_cols=23  Identities=30%  Similarity=0.706  Sum_probs=11.2

Q ss_pred             ccCcCccccCCchhHHHHHhhhC
Q psy4796         222 ACSYCDYTCNQSSNLQTHLRIHK  244 (274)
Q Consensus       222 ~C~~C~~~f~~~~~l~~H~~~h~  244 (274)
                      .|+.|++.|+.++.|+.|++.|+
T Consensus         3 kc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           3 KCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             ccchhhhHhcchhHHHHHhhccC
Confidence            44445555544444555544443

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.6e-07  Score=42.01  Aligned_cols=29  Identities=28%  Similarity=0.580  Sum_probs=22.1

Q ss_pred             CCceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         246 EREYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       246 ~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      ++||+|.+|.+...+.+.|.-|++.|.|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            46778888887777777788888777764

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.6e-07  Score=42.97  Aligned_cols=28  Identities=25%  Similarity=0.732  Sum_probs=16.5

Q ss_pred             CCCcccCcCccccCCchhHHHHHhhhCC
Q psy4796         218 DKPFACSYCDYTCNQSSNLQTHLRIHKT  245 (274)
Q Consensus       218 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~  245 (274)
                      ++||.|++|...|..++.+.-|++.|.|
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCcccchHHHHhhccccceEeeecccC
Confidence            3556666666666666666666666544

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2.2e-07  Score=42.57  Aligned_cols=27  Identities=30%  Similarity=0.610  Sum_probs=20.8

Q ss_pred             CceecCC--CCccCCChhHHHHHHhhhcC
Q psy4796         247 REYACGK--CAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       247 ~~~~C~~--C~~~f~~~~~l~~H~~~~H~  273 (274)
                      +||.|.+  |++.+.+.++|.+|++.+||
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            5777766  88888888888888887776

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=3.8e-07  Score=39.70  Aligned_cols=26  Identities=19%  Similarity=0.248  Sum_probs=24.1

Q ss_pred             ceecCCCCccCCChhHHHHHHhhhcC
Q psy4796         248 EYACGKCAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       248 ~~~C~~C~~~f~~~~~l~~H~~~~H~  273 (274)
                      |.+|..|++.|+.+..|..|++.|.|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            56899999999999999999999976

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=4e-07  Score=41.65  Aligned_cols=28  Identities=21%  Similarity=0.504  Sum_probs=26.0

Q ss_pred             CCceecCCCCccCCChhHHHHHHhhhcC
Q psy4796         246 EREYACGKCAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       246 ~~~~~C~~C~~~f~~~~~l~~H~~~~H~  273 (274)
                      ++||.|++|...|..+..+.-|++.|-|
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCcccchHHHHhhccccceEeeecccC
Confidence            5899999999999999999999999865

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=3.9e-07  Score=42.71  Aligned_cols=32  Identities=28%  Similarity=0.503  Sum_probs=28.9

Q ss_pred             CCcccCcCccccCCchhHHHHHhhhCCCCcee
Q psy4796         219 KPFACSYCDYTCNQSSNLQTHLRIHKTEREYA  250 (274)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~  250 (274)
                      +...|..||+.|.....|.+|.-.|.+++||.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            44689999999999999999999999999983

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1e-06  Score=39.59  Aligned_cols=26  Identities=27%  Similarity=0.516  Sum_probs=18.7

Q ss_pred             eecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         249 YACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       249 ~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      |.|+.|+....-.+.|++|++.|++|
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            66777777777777777777777664

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=1e-06  Score=39.70  Aligned_cols=26  Identities=31%  Similarity=0.485  Sum_probs=24.2

Q ss_pred             CCceecCCCCccCCChhHHHHHHhhh
Q psy4796         246 EREYACGKCAYRTAALPDLKLHLKNM  271 (274)
Q Consensus       246 ~~~~~C~~C~~~f~~~~~l~~H~~~~  271 (274)
                      ++||.|.+||+.|....+-.+|.+.|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            58999999999999999999998876

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=2.5e-06  Score=38.30  Aligned_cols=26  Identities=27%  Similarity=0.594  Sum_probs=16.4

Q ss_pred             cccCCCCccccCHHHHHHHHhhccCC
Q psy4796         193 FVCFACPYATQYACYIKTHVMTHTGD  218 (274)
Q Consensus       193 ~~C~~C~~~f~~~~~l~~H~~~h~~~  218 (274)
                      |.|+.||......+.|..|++.|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            55666666666666666666666654

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.7e-06  Score=38.40  Aligned_cols=26  Identities=19%  Similarity=0.175  Sum_probs=14.9

Q ss_pred             eecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         249 YACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       249 ~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      ..|..||+.|...+.|.+|...|+||
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            34555666665555566665555554

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.6e-06  Score=38.65  Aligned_cols=28  Identities=43%  Similarity=0.927  Sum_probs=19.5

Q ss_pred             CCCcccCcCccccCCchhHHHHHhhhCC
Q psy4796         218 DKPFACSYCDYTCNQSSNLQTHLRIHKT  245 (274)
Q Consensus       218 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~  245 (274)
                      ++||.|..|...-.+.++|..|++.|+|
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            4567777777766677777777777765

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=3.5e-06  Score=37.37  Aligned_cols=24  Identities=29%  Similarity=0.551  Sum_probs=11.7

Q ss_pred             ccCcCccccCCchhHHHHHhhhCC
Q psy4796         222 ACSYCDYTCNQSSNLQTHLRIHKT  245 (274)
Q Consensus       222 ~C~~C~~~f~~~~~l~~H~~~h~~  245 (274)
                      .|.+||+.|.-.+.|++|+-+|++
T Consensus         4 vc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           4 VCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             ECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             hHHHHhHHHHHHHHHHHHhhcccC
Confidence            344455555544455555444443

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=5e-06  Score=37.48  Aligned_cols=27  Identities=37%  Similarity=0.801  Sum_probs=22.2

Q ss_pred             CceecCCCCccCCChhHHHHHHhhhcC
Q psy4796         247 REYACGKCAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       247 ~~~~C~~C~~~f~~~~~l~~H~~~~H~  273 (274)
                      +||.|..|.....+.++|..|++..|+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccccccccccccchhhhhhhhcccc
Confidence            578888888888888888888887775

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=3.9e-06  Score=38.38  Aligned_cols=26  Identities=27%  Similarity=0.709  Sum_probs=17.4

Q ss_pred             CCcccCc--CccccCCchhHHHHHhhhC
Q psy4796         219 KPFACSY--CDYTCNQSSNLQTHLRIHK  244 (274)
Q Consensus       219 ~~~~C~~--C~~~f~~~~~l~~H~~~h~  244 (274)
                      +||.|.+  |+++|+..++|++|++.++
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            4667755  7777777777777776544

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.84  E-value=7.1e-06  Score=35.81  Aligned_cols=25  Identities=28%  Similarity=0.438  Sum_probs=14.4

Q ss_pred             ccCcCccccCCchhHHHHHhhhCCC
Q psy4796         222 ACSYCDYTCNQSSNLQTHLRIHKTE  246 (274)
Q Consensus       222 ~C~~C~~~f~~~~~l~~H~~~h~~~  246 (274)
                      +|+.|.+.|.++..|+.|.+.|+|+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            4555555555555555555555554

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=6.3e-06  Score=37.10  Aligned_cols=28  Identities=29%  Similarity=0.637  Sum_probs=24.3

Q ss_pred             CceecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         247 REYACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       247 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      +||+|..|.---...++|..|++..||+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccC
Confidence            5789999998888889999999988875

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.81  E-value=7.1e-06  Score=35.19  Aligned_cols=23  Identities=26%  Similarity=0.498  Sum_probs=17.3

Q ss_pred             eecCCCCccCCChhHHHHHHhhh
Q psy4796         249 YACGKCAYRTAALPDLKLHLKNM  271 (274)
Q Consensus       249 ~~C~~C~~~f~~~~~l~~H~~~~  271 (274)
                      |+|++|...|..++.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            57777777777777777776665

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=1.1e-05  Score=35.57  Aligned_cols=25  Identities=32%  Similarity=0.684  Sum_probs=16.4

Q ss_pred             CceecCCCCccCCChhHHHHHHhhh
Q psy4796         247 REYACGKCAYRTAALPDLKLHLKNM  271 (274)
Q Consensus       247 ~~~~C~~C~~~f~~~~~l~~H~~~~  271 (274)
                      +||+|..|.+...+.++|.+|+|.|
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            4666666666666666666666655

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.72  E-value=9.7e-06  Score=37.38  Aligned_cols=26  Identities=27%  Similarity=0.469  Sum_probs=17.6

Q ss_pred             ceecCCCCccCCChhHHHHHHhhhcC
Q psy4796         248 EYACGKCAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       248 ~~~C~~C~~~f~~~~~l~~H~~~~H~  273 (274)
                      ||.|++|+..|..+.-|.+|.++-|+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            56677777777777777777666554

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=1.7e-05  Score=34.54  Aligned_cols=25  Identities=20%  Similarity=0.239  Sum_probs=23.9

Q ss_pred             ecCCCCccCCChhHHHHHHhhhcCC
Q psy4796         250 ACGKCAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       250 ~C~~C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      +|+.|.++|.++-.|.-|-++|.||
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            6999999999999999999999997

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.7e-05  Score=35.05  Aligned_cols=26  Identities=54%  Similarity=1.099  Sum_probs=18.1

Q ss_pred             CCcccCcCccccCCchhHHHHHhhhC
Q psy4796         219 KPFACSYCDYTCNQSSNLQTHLRIHK  244 (274)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h~  244 (274)
                      +||.|..|...-...+.|..|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            56777777777677777777777764

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=2.8e-05  Score=35.00  Aligned_cols=25  Identities=40%  Similarity=1.002  Sum_probs=20.6

Q ss_pred             CCcccCcCccccCCchhHHHHHhhh
Q psy4796         219 KPFACSYCDYTCNQSSNLQTHLRIH  243 (274)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h  243 (274)
                      +||+|..|.......++|+.|+++.
T Consensus         1 kpy~cqyc~yrsadssnlkthiktk   25 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTK   25 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHH
T ss_pred             CCccccccccccccchhhhhhhhcc
Confidence            5788888888888888888888773

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.61  E-value=2.1e-05  Score=38.85  Aligned_cols=24  Identities=25%  Similarity=0.807  Sum_probs=11.1

Q ss_pred             cccCcCccccCCchhHHHHHhhhC
Q psy4796         221 FACSYCDYTCNQSSNLQTHLRIHK  244 (274)
Q Consensus       221 ~~C~~C~~~f~~~~~l~~H~~~h~  244 (274)
                      |.|..|++.|.+.++|=.|++.|.
T Consensus         6 ~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           6 YTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             EECTTTCCEESSHHHHHHHHHTTC
T ss_pred             cCCCCCCCccCCcccccchHhhhc
Confidence            444444444444444444444443

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.61  E-value=2.4e-05  Score=33.50  Aligned_cols=24  Identities=33%  Similarity=0.786  Sum_probs=16.5

Q ss_pred             cccCcCccccCCchhHHHHHhhhC
Q psy4796         221 FACSYCDYTCNQSSNLQTHLRIHK  244 (274)
Q Consensus       221 ~~C~~C~~~f~~~~~l~~H~~~h~  244 (274)
                      |.|..|.++|..++.|.+|+++|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            566677777777777777777663

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.59  E-value=2e-05  Score=35.17  Aligned_cols=24  Identities=33%  Similarity=0.805  Sum_probs=12.2

Q ss_pred             CcccCc--CccccCCchhHHHHHhhh
Q psy4796         220 PFACSY--CDYTCNQSSNLQTHLRIH  243 (274)
Q Consensus       220 ~~~C~~--C~~~f~~~~~l~~H~~~h  243 (274)
                      ||.|+.  |++.|...+.|++|.++|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            455533  555555555555555444

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.53  E-value=3.2e-05  Score=34.53  Aligned_cols=26  Identities=31%  Similarity=0.443  Sum_probs=23.1

Q ss_pred             CCceecCC--CCccCCChhHHHHHHhhh
Q psy4796         246 EREYACGK--CAYRTAALPDLKLHLKNM  271 (274)
Q Consensus       246 ~~~~~C~~--C~~~f~~~~~l~~H~~~~  271 (274)
                      +.||+|+.  |++.|...+.|.+|.++|
T Consensus         1 q~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           1 QLPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             TCCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCCccCCccCccccccCHHHHhhhhhcc
Confidence            36899987  999999999999998775

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=3.3e-05  Score=38.28  Aligned_cols=24  Identities=25%  Similarity=0.443  Sum_probs=17.2

Q ss_pred             CCCceecCCCCccCCChhHHHHHH
Q psy4796         245 TEREYACGKCAYRTAALPDLKLHL  268 (274)
Q Consensus       245 ~~~~~~C~~C~~~f~~~~~l~~H~  268 (274)
                      |.+||.|.+|++.|.-..++.+|.
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhh
Confidence            556777777777777777777775

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=3.1e-05  Score=38.34  Aligned_cols=26  Identities=27%  Similarity=0.614  Sum_probs=21.7

Q ss_pred             cCCCCcccCcCccccCCchhHHHHHh
Q psy4796         216 TGDKPFACSYCDYTCNQSSNLQTHLR  241 (274)
Q Consensus       216 ~~~~~~~C~~C~~~f~~~~~l~~H~~  241 (274)
                      +|-|||.|..|++.|-.++++.+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            46688999999999999998888864

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.49  E-value=5.5e-05  Score=37.32  Aligned_cols=30  Identities=20%  Similarity=0.403  Sum_probs=26.9

Q ss_pred             CCccccCCCCccccCHHHHHHHHhhccCCC
Q psy4796         190 KKKFVCFACPYATQYACYIKTHVMTHTGDK  219 (274)
Q Consensus       190 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  219 (274)
                      .+.|.|..|++.|.+...|--|++.|..++
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcchH
Confidence            456999999999999999999999997665

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.43  E-value=3.6e-05  Score=35.42  Aligned_cols=26  Identities=23%  Similarity=0.603  Sum_probs=17.5

Q ss_pred             CcccCcCccccCCchhHHHHHhh-hCC
Q psy4796         220 PFACSYCDYTCNQSSNLQTHLRI-HKT  245 (274)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~-h~~  245 (274)
                      ||.|.+|++.|..++-|.+|++. |.+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            56777777777777777777643 544

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=5.7e-05  Score=33.81  Aligned_cols=23  Identities=35%  Similarity=0.852  Sum_probs=14.1

Q ss_pred             cccCCCCCcccCChhHHHHHHhh
Q psy4796          92 PYKCPHCDHCFTQKVVLQRHLLT  114 (274)
Q Consensus        92 ~~~C~~C~~~f~~~~~l~~H~~~  114 (274)
                      ||.|..|+..|.++++|..||..
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            45666666666666666666653

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=4.8e-05  Score=35.03  Aligned_cols=22  Identities=23%  Similarity=0.496  Sum_probs=11.7

Q ss_pred             CceecCC--CCccCCChhHHHHHH
Q psy4796         247 REYACGK--CAYRTAALPDLKLHL  268 (274)
Q Consensus       247 ~~~~C~~--C~~~f~~~~~l~~H~  268 (274)
                      +||.|.+  |.|.|++.++-.+|+
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHq   24 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQ   24 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHH
T ss_pred             CCccccCCChhhhhcchhhhhhhc
Confidence            3455544  555555555555554

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.34  E-value=8.6e-05  Score=33.14  Aligned_cols=24  Identities=25%  Similarity=0.580  Sum_probs=9.3

Q ss_pred             cccCCCCccccCHHHHHHHHhhcc
Q psy4796         193 FVCFACPYATQYACYIKTHVMTHT  216 (274)
Q Consensus       193 ~~C~~C~~~f~~~~~l~~H~~~h~  216 (274)
                      |.|..|...|+.+..|+.|+..|+
T Consensus         5 ftcs~cqe~f~rrmelr~hmvsht   28 (30)
T d2dlqa3           5 FTCSVCQETFRRRMELRLHMVSHT   28 (30)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHS
T ss_pred             EEeHHHHHHHHHHHhheeeeeccc
Confidence            333333333333333333333333

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.30  E-value=0.00011  Score=32.81  Aligned_cols=29  Identities=31%  Similarity=0.609  Sum_probs=26.4

Q ss_pred             CCCcccCcCccccCCchhHHHHHhhhCCC
Q psy4796         218 DKPFACSYCDYTCNQSSNLQTHLRIHKTE  246 (274)
Q Consensus       218 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  246 (274)
                      +..|.|..|...|..+..|+.|+-.|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            45689999999999999999999999875

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00011  Score=35.84  Aligned_cols=26  Identities=35%  Similarity=0.685  Sum_probs=12.9

Q ss_pred             CCCccc--CcCccccCCchhHHHHHhhh
Q psy4796         218 DKPFAC--SYCDYTCNQSSNLQTHLRIH  243 (274)
Q Consensus       218 ~~~~~C--~~C~~~f~~~~~l~~H~~~h  243 (274)
                      +|||.|  +-|+.+|.+.+.|..|...|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            445555  33555555555555554444

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=7.7e-05  Score=34.32  Aligned_cols=28  Identities=32%  Similarity=0.689  Sum_probs=21.6

Q ss_pred             CCcccCc--CccccCCchhHHHHH-hhhCCC
Q psy4796         219 KPFACSY--CDYTCNQSSNLQTHL-RIHKTE  246 (274)
Q Consensus       219 ~~~~C~~--C~~~f~~~~~l~~H~-~~h~~~  246 (274)
                      +||.|..  |.+.|+..++...|+ ++|..+
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccCC
Confidence            5788866  888888888888886 777643

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.23  E-value=0.00011  Score=31.51  Aligned_cols=24  Identities=25%  Similarity=0.526  Sum_probs=16.6

Q ss_pred             eecCCCCccCCChhHHHHHHhhhc
Q psy4796         249 YACGKCAYRTAALPDLKLHLKNMH  272 (274)
Q Consensus       249 ~~C~~C~~~f~~~~~l~~H~~~~H  272 (274)
                      |.|+.|-+.|..+.++..|++..|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            567777777777777777776655

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00011  Score=32.91  Aligned_cols=23  Identities=26%  Similarity=0.613  Sum_probs=16.9

Q ss_pred             ceecCCCCccCCChhHHHHHHhh
Q psy4796         248 EYACGKCAYRTAALPDLKLHLKN  270 (274)
Q Consensus       248 ~~~C~~C~~~f~~~~~l~~H~~~  270 (274)
                      ||.|..|.-.|.++.+|..|++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            57777777777777777777754

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.14  E-value=0.00017  Score=32.26  Aligned_cols=27  Identities=19%  Similarity=0.288  Sum_probs=12.8

Q ss_pred             ceecCC--CCccCCChhHHHHHHhhhcCC
Q psy4796         248 EYACGK--CAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       248 ~~~C~~--C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      ||-|..  |.+.|.+...|.+|.-.|.||
T Consensus         2 pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           2 PFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             SEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CcCcccccccccchhhhhhhhhhccccCC
Confidence            444433  555555555555554444443

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.01  E-value=0.00021  Score=32.00  Aligned_cols=28  Identities=32%  Similarity=0.599  Sum_probs=17.3

Q ss_pred             CCcccCc--CccccCCchhHHHHHhhhCCC
Q psy4796         219 KPFACSY--CDYTCNQSSNLQTHLRIHKTE  246 (274)
Q Consensus       219 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~  246 (274)
                      +||.|..  |.+.|.+...|.+|.-.|+++
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            3566643  666666666666666666553

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00038  Score=30.72  Aligned_cols=24  Identities=42%  Similarity=0.854  Sum_probs=15.8

Q ss_pred             cccCcCccccCCchhHHHHHhhhC
Q psy4796         221 FACSYCDYTCNQSSNLQTHLRIHK  244 (274)
Q Consensus       221 ~~C~~C~~~f~~~~~l~~H~~~h~  244 (274)
                      -.|+.|.++.+++..|+.|.++|.
T Consensus         3 ekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           3 EKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGGC
T ss_pred             ccCcccccccCcHHHHHHhhcccc
Confidence            456666666666666666666664

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.91  E-value=0.00036  Score=29.77  Aligned_cols=23  Identities=26%  Similarity=0.596  Sum_probs=14.8

Q ss_pred             ceecCCCCccCCChhHHHHHHhh
Q psy4796         248 EYACGKCAYRTAALPDLKLHLKN  270 (274)
Q Consensus       248 ~~~C~~C~~~f~~~~~l~~H~~~  270 (274)
                      ||+|+-|...|..+.+|..|+-.
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            56666666666666666666543

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00038  Score=33.96  Aligned_cols=27  Identities=19%  Similarity=0.472  Sum_probs=19.0

Q ss_pred             CCCceecCC--CCccCCChhHHHHHHhhh
Q psy4796         245 TEREYACGK--CAYRTAALPDLKLHLKNM  271 (274)
Q Consensus       245 ~~~~~~C~~--C~~~f~~~~~l~~H~~~~  271 (274)
                      +++||.|+.  |+..|.+...|..|.++|
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhh
Confidence            467777743  777777777777776654

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00041  Score=35.57  Aligned_cols=24  Identities=21%  Similarity=0.342  Sum_probs=18.5

Q ss_pred             ceecCCCCccCCChhHHHHHHhhh
Q psy4796         248 EYACGKCAYRTAALPDLKLHLKNM  271 (274)
Q Consensus       248 ~~~C~~C~~~f~~~~~l~~H~~~~  271 (274)
                      .|.|++|+|.|.+...|..|..+|
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             eeeccccccccCCHHHHhHhHHhc
Confidence            467888888888888888886654

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00093  Score=29.89  Aligned_cols=23  Identities=22%  Similarity=0.804  Sum_probs=12.3

Q ss_pred             CccCCCCCCccccHHHHHHHHHH
Q psy4796         120 PFACHLCPYRASRKYYITAHLNS  142 (274)
Q Consensus       120 ~~~C~~C~~~f~~~~~l~~H~~~  142 (274)
                      ||+|..|.....+.++|..|++.
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CcccceecccccCcchHHHHHHH
Confidence            45555555555555555555544

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.46  E-value=0.00092  Score=28.47  Aligned_cols=21  Identities=52%  Similarity=1.016  Sum_probs=11.1

Q ss_pred             cccCCCCCcccCChhHHHHHH
Q psy4796          92 PYKCPHCDHCFTQKVVLQRHL  112 (274)
Q Consensus        92 ~~~C~~C~~~f~~~~~l~~H~  112 (274)
                      ||+|..|...|-.+..|+.||
T Consensus         2 pykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHH
Confidence            455555555555555555554

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.41  E-value=0.0013  Score=28.73  Aligned_cols=21  Identities=24%  Similarity=0.358  Sum_probs=12.4

Q ss_pred             ceecCCCCccCCChhHHHHHH
Q psy4796         248 EYACGKCAYRTAALPDLKLHL  268 (274)
Q Consensus       248 ~~~C~~C~~~f~~~~~l~~H~  268 (274)
                      ||+|+.||+.+-.+.+|..|.
T Consensus         1 pf~c~kcgkcyfrkenllehe   21 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHE   21 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHH
Confidence            455666666666666666554

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.0011  Score=31.03  Aligned_cols=25  Identities=20%  Similarity=0.432  Sum_probs=16.4

Q ss_pred             ceecCCCCccCCChhHHHHHHhhhc
Q psy4796         248 EYACGKCAYRTAALPDLKLHLKNMH  272 (274)
Q Consensus       248 ~~~C~~C~~~f~~~~~l~~H~~~~H  272 (274)
                      .|.|+.|+++|..+..+.+|.....
T Consensus         4 afvcskcgktftrrntm~rha~nc~   28 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCA   28 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCC
T ss_pred             eeeecccccchhcchHHHHHhhhcC
Confidence            3677777777777777777755443

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.35  E-value=0.00096  Score=28.53  Aligned_cols=22  Identities=23%  Similarity=0.768  Sum_probs=18.4

Q ss_pred             cccCcCccccCCchhHHHHHhh
Q psy4796         221 FACSYCDYTCNQSSNLQTHLRI  242 (274)
Q Consensus       221 ~~C~~C~~~f~~~~~l~~H~~~  242 (274)
                      |.|+.|-+.|+.++++..|+++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            7788888888888888888775

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.30  E-value=0.0012  Score=28.82  Aligned_cols=22  Identities=32%  Similarity=0.611  Sum_probs=17.7

Q ss_pred             CcccCcCccccCCchhHHHHHh
Q psy4796         220 PFACSYCDYTCNQSSNLQTHLR  241 (274)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~  241 (274)
                      ||+|..||+.|-.+.+|..|.-
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            5788888888888888888753

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0018  Score=28.37  Aligned_cols=24  Identities=33%  Similarity=0.688  Sum_probs=13.4

Q ss_pred             eecCCCCccCCChhHHHHHHhhhc
Q psy4796         249 YACGKCAYRTAALPDLKLHLKNMH  272 (274)
Q Consensus       249 ~~C~~C~~~f~~~~~l~~H~~~~H  272 (274)
                      |+||.|+..-..+++|.-|++.-|
T Consensus         3 ~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTS
T ss_pred             ccCCcchhheeehhhhhHHhhhcc
Confidence            555555555555555555555544

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0015  Score=33.46  Aligned_cols=26  Identities=19%  Similarity=0.227  Sum_probs=22.1

Q ss_pred             CccccCCCCccccCHHHHHHHHhhcc
Q psy4796         191 KKFVCFACPYATQYACYIKTHVMTHT  216 (274)
Q Consensus       191 ~~~~C~~C~~~f~~~~~l~~H~~~h~  216 (274)
                      ..|.|..|++.|.+...|+.|...|-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            35889999999999999999988774

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0033  Score=27.98  Aligned_cols=25  Identities=16%  Similarity=0.575  Sum_probs=16.5

Q ss_pred             ccCCCCCcccCChhHHHHHHhhhcC
Q psy4796          93 YKCPHCDHCFTQKVVLQRHLLTHTG  117 (274)
Q Consensus        93 ~~C~~C~~~f~~~~~l~~H~~~h~~  117 (274)
                      |.|..|++..++...++.|+...++
T Consensus         3 ftc~hcgkqlks~~gmkyhvmadhn   27 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMANHN   27 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             eechhHHHHHhhccCceEEEeeccc
Confidence            6677777777777777777654443

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0033  Score=27.64  Aligned_cols=26  Identities=19%  Similarity=0.488  Sum_probs=22.9

Q ss_pred             ceecCCCCccCCChhHHHHHHhhhcC
Q psy4796         248 EYACGKCAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       248 ~~~C~~C~~~f~~~~~l~~H~~~~H~  273 (274)
                      |-+|+.|.+..++++.|.-|-|.|=.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc~   27 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHCT   27 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGCC
T ss_pred             CccCcccccccCcHHHHHHhhccccC
Confidence            45899999999999999999888743

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0025  Score=27.91  Aligned_cols=23  Identities=39%  Similarity=0.722  Sum_probs=20.4

Q ss_pred             CcccCcCccccCCchhHHHHHhh
Q psy4796         220 PFACSYCDYTCNQSSNLQTHLRI  242 (274)
Q Consensus       220 ~~~C~~C~~~f~~~~~l~~H~~~  242 (274)
                      .|+|+.|+-....+++|+.|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            38899999999999999999875

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.0052  Score=29.17  Aligned_cols=24  Identities=21%  Similarity=0.308  Sum_probs=18.6

Q ss_pred             cCCCCccccCHHHHHHHHhhccCC
Q psy4796         195 CFACPYATQYACYIKTHVMTHTGD  218 (274)
Q Consensus       195 C~~C~~~f~~~~~l~~H~~~h~~~  218 (274)
                      |+-=++.|.....|..|+++|+||
T Consensus        10 C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          10 CSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCCcchhHHHHHHHHhhcCCC
Confidence            344455688999999999999875

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.99  E-value=0.0056  Score=27.75  Aligned_cols=28  Identities=29%  Similarity=0.662  Sum_probs=20.3

Q ss_pred             Ccccc--CCCCccccCHHHHHHHHhhccCC
Q psy4796         191 KKFVC--FACPYATQYACYIKTHVMTHTGD  218 (274)
Q Consensus       191 ~~~~C--~~C~~~f~~~~~l~~H~~~h~~~  218 (274)
                      +.|.|  +.|+..|.....|..|+-.|+|+
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            34666  45888888888888888877764

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.80  E-value=0.011  Score=26.72  Aligned_cols=28  Identities=21%  Similarity=0.291  Sum_probs=18.3

Q ss_pred             CceecCC--CCccCCChhHHHHHHhhhcCC
Q psy4796         247 REYACGK--CAYRTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       247 ~~~~C~~--C~~~f~~~~~l~~H~~~~H~~  274 (274)
                      +.|.|+.  |+..|...--|..|+-.|+||
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            4466643  777776666677777777665

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.58  E-value=0.015  Score=25.54  Aligned_cols=18  Identities=28%  Similarity=0.628  Sum_probs=13.8

Q ss_pred             ccccccChHHHHHHHhhc
Q psy4796          70 CSYVATARIAIKNHLSSH   87 (274)
Q Consensus        70 C~~~f~~~~~l~~H~~~h   87 (274)
                      |++.|.+.++|+.|+-+|
T Consensus         9 C~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHGGG
T ss_pred             HHHHhhchHHHHHHhhcc
Confidence            777888888888877665

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.016  Score=26.99  Aligned_cols=26  Identities=23%  Similarity=0.383  Sum_probs=17.6

Q ss_pred             ccccCCCCccccCHHHHHHHHhhccC
Q psy4796         192 KFVCFACPYATQYACYIKTHVMTHTG  217 (274)
Q Consensus       192 ~~~C~~C~~~f~~~~~l~~H~~~h~~  217 (274)
                      .|.|..||+.|..+..+.+|....+|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            36677777777777777777655544

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.22  E-value=0.024  Score=31.52  Aligned_cols=18  Identities=28%  Similarity=0.377  Sum_probs=8.8

Q ss_pred             CCeeeccccCCcchhhHHH
Q psy4796          27 ADVTCLHCSLTTPCVMKDM   45 (274)
Q Consensus        27 ~~~~C~~C~~~f~~~~~~l   45 (274)
                      +.|.|+.|++.| ...+.+
T Consensus        13 ~~y~Cp~C~~~y-s~Lda~   30 (62)
T d1vd4a_          13 ASFKCPVCSSTF-TDLEAN   30 (62)
T ss_dssp             SEEECSSSCCEE-EHHHHH
T ss_pred             CceECCCCCCCc-chhhHH
Confidence            345555555555 444333

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.18  E-value=0.014  Score=26.95  Aligned_cols=20  Identities=20%  Similarity=0.469  Sum_probs=13.6

Q ss_pred             eecCCCCccCCChhHHHHHH
Q psy4796         249 YACGKCAYRTAALPDLKLHL  268 (274)
Q Consensus       249 ~~C~~C~~~f~~~~~l~~H~  268 (274)
                      |.|+-||-.|++.+.|+.|+
T Consensus         9 f~c~pcgirfss~stleahq   28 (36)
T d1y0jb1           9 FMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CBCTTTCCBCSCHHHHHHHT
T ss_pred             eeccccceeecChhHHHhhh
Confidence            66677777777776666664

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.16  E-value=0.015  Score=27.56  Aligned_cols=18  Identities=17%  Similarity=-0.027  Sum_probs=8.6

Q ss_pred             cCCChhHHHHHHhhhcCC
Q psy4796         257 RTAALPDLKLHLKNMHLY  274 (274)
Q Consensus       257 ~f~~~~~l~~H~~~~H~~  274 (274)
                      .|...-.|..|+|.|+||
T Consensus        16 pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          16 PFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCSSHHHHHHHTHHHHCC
T ss_pred             cchhHHHHHHHHhhcCCC
Confidence            344444444455444443

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.12  E-value=0.017  Score=25.41  Aligned_cols=18  Identities=17%  Similarity=0.288  Sum_probs=11.7

Q ss_pred             CCccCCChhHHHHHHhhh
Q psy4796         254 CAYRTAALPDLKLHLKNM  271 (274)
Q Consensus       254 C~~~f~~~~~l~~H~~~~  271 (274)
                      |.+.|.+.+.+.+|+..|
T Consensus         9 C~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHGGG
T ss_pred             HHHHhhchHHHHHHhhcc
Confidence            666666666666666544

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.97  E-value=0.012  Score=29.04  Aligned_cols=26  Identities=31%  Similarity=0.671  Sum_probs=16.9

Q ss_pred             CCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCcc
Q psy4796         219 KPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYR  257 (274)
Q Consensus       219 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~  257 (274)
                      +.|.|++||..+             .++.|-.||+|+..
T Consensus         4 ~~~~C~vCG~i~-------------~g~~P~~CPvCg~~   29 (37)
T d1nnqa2           4 KVYICPICGYTA-------------VDEAPEYCPVCGAP   29 (37)
T ss_dssp             CEEECTTTCCEE-------------ESCCCSBCTTTCCB
T ss_pred             cEEECCCCCCEe-------------cCCCCCcCCCCCCc
Confidence            457777887653             33466678887753

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.041  Score=24.35  Aligned_cols=21  Identities=33%  Similarity=0.577  Sum_probs=13.2

Q ss_pred             cccCCCCccccCHHHHHHHHh
Q psy4796         193 FVCFACPYATQYACYIKTHVM  213 (274)
Q Consensus       193 ~~C~~C~~~f~~~~~l~~H~~  213 (274)
                      |.|..||+...+...+..|+.
T Consensus         3 ftc~hcgkqlks~~gmkyhvm   23 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVM   23 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHH
T ss_pred             eechhHHHHHhhccCceEEEe
Confidence            556666666666666666654

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.78  E-value=0.024  Score=31.45  Aligned_cols=39  Identities=21%  Similarity=0.319  Sum_probs=23.6

Q ss_pred             cCCcceecccccccccChHHHHHHHhhcCCCCcccCCCCCcc
Q psy4796          60 SAKLQFLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHC  101 (274)
Q Consensus        60 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~  101 (274)
                      .....|.||.|+++|..-.+++.   .-.....|.|..|+-.
T Consensus        10 ~~~~~y~Cp~C~~~ys~Lda~~L---~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_          10 TNRASFKCPVCSSTFTDLEANQL---FDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             CSSSEEECSSSCCEEEHHHHHHH---EETTTTEEBCSSSCCB
T ss_pred             ccCCceECCCCCCCcchhhHHHh---cCcCCCeEEecCCCCE
Confidence            44556788888888776555433   2223345777777754

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=93.70  E-value=0.016  Score=28.32  Aligned_cols=27  Identities=33%  Similarity=0.546  Sum_probs=17.4

Q ss_pred             CCCcccCcCccccCCchhHHHHHhhhCCCCceecCCCCcc
Q psy4796         218 DKPFACSYCDYTCNQSSNLQTHLRIHKTEREYACGKCAYR  257 (274)
Q Consensus       218 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~  257 (274)
                      ++.|.|++||...             .++.|-+||+|+..
T Consensus         3 ~~~~vC~vCGyi~-------------~g~~Pe~CPvCg~~   29 (36)
T d1yuza2           3 DKFHLCPICGYIH-------------KGEDFEKCPICFRP   29 (36)
T ss_dssp             CCEEECSSSCCEE-------------ESSCCSBCTTTCCB
T ss_pred             CCEEECCCCCCEe-------------eCCCCCcCCCCCCc
Confidence            4557788888653             34456678888753

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.58  E-value=0.036  Score=25.54  Aligned_cols=21  Identities=24%  Similarity=0.641  Sum_probs=12.1

Q ss_pred             ccccCCCCccccCHHHHHHHH
Q psy4796         192 KFVCFACPYATQYACYIKTHV  212 (274)
Q Consensus       192 ~~~C~~C~~~f~~~~~l~~H~  212 (274)
                      .|.|+-||..|.+.+.|..|+
T Consensus         8 rf~c~pcgirfss~stleahq   28 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHT
T ss_pred             ceeccccceeecChhHHHhhh
Confidence            355556666666666555554

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.33  E-value=0.027  Score=26.33  Aligned_cols=25  Identities=20%  Similarity=0.458  Sum_probs=13.4

Q ss_pred             ceecCCCCccCCChhHHHHHHhhhc
Q psy4796         248 EYACGKCAYRTAALPDLKLHLKNMH  272 (274)
Q Consensus       248 ~~~C~~C~~~f~~~~~l~~H~~~~H  272 (274)
                      .|.|.+|.+++...+++-+|.-..|
T Consensus         8 ~yRC~~C~r~YTHISNFCRHyvtSH   32 (37)
T d2drpa1           8 TYRCKVCSRVYTHISNFCRHYVTSH   32 (37)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHS
T ss_pred             EEEeehhhHHHHHHHHHHHHHHhhc
Confidence            3555555555555555555554443

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.97  E-value=0.037  Score=28.05  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=11.8

Q ss_pred             CceecCCCCccCCChhHHHHHHh
Q psy4796         247 REYACGKCAYRTAALPDLKLHLK  269 (274)
Q Consensus       247 ~~~~C~~C~~~f~~~~~l~~H~~  269 (274)
                      .|-.|++|+.......+|.+|+.
T Consensus        23 qpatcpic~avirqsrnlrrhle   45 (54)
T d1yuja_          23 QPATCPICYAVIRQSRNLRRHLE   45 (54)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHHH
Confidence            34455555555555555555543

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=92.85  E-value=0.025  Score=24.43  Aligned_cols=18  Identities=22%  Similarity=0.444  Sum_probs=10.4

Q ss_pred             CccccCCchhHHHHHhhh
Q psy4796         226 CDYTCNQSSNLQTHLRIH  243 (274)
Q Consensus       226 C~~~f~~~~~l~~H~~~h  243 (274)
                      |++.|..-.+|+.|+..|
T Consensus         9 c~kafkkhnqlkvhqf~h   26 (28)
T d2j7ja1           9 CGKAFKKHNQLKVHQFSH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHHHH
T ss_pred             chHHHhhccceEEEeecc
Confidence            556665555565555554

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.69  E-value=0.054  Score=27.43  Aligned_cols=25  Identities=12%  Similarity=0.285  Sum_probs=14.8

Q ss_pred             CCCccccCCCCccccCHHHHHHHHh
Q psy4796         189 DKKKFVCFACPYATQYACYIKTHVM  213 (274)
Q Consensus       189 ~~~~~~C~~C~~~f~~~~~l~~H~~  213 (274)
                      .+.+-.|+.|+...+...+|+.|+.
T Consensus        21 s~qpatcpic~avirqsrnlrrhle   45 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLE   45 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHH
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHH
Confidence            3445566666666666666666654

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.28  E-value=0.031  Score=31.62  Aligned_cols=25  Identities=20%  Similarity=0.202  Sum_probs=19.6

Q ss_pred             CCCCeeeccccCCcchhhHHHHHhhh
Q psy4796          25 PPADVTCLHCSLTTPCVMKDMIRHGR   50 (274)
Q Consensus        25 ~~~~~~C~~C~~~f~~~~~~l~~H~~   50 (274)
                      +..-|-|..|++.| .+...|..|.+
T Consensus        12 G~gqfYCv~C~K~F-~se~~l~~H~k   36 (67)
T d1zr9a1          12 GGGLHRCLACARYF-IDSTNLKTHFR   36 (67)
T ss_dssp             GGGCSEETTTTEEC-SSHHHHHHHTT
T ss_pred             CCCEEecccccCcc-CCHHHHHHHHc
Confidence            34458888888888 88888888876

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.71  E-value=0.017  Score=31.66  Aligned_cols=24  Identities=33%  Similarity=0.808  Sum_probs=14.0

Q ss_pred             cccCcCccccCCchhHHHHHhhhC
Q psy4796         221 FACSYCDYTCNQSSNLQTHLRIHK  244 (274)
Q Consensus       221 ~~C~~C~~~f~~~~~l~~H~~~h~  244 (274)
                      |+|..|...|.+...|..|+..|+
T Consensus        19 yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          19 YQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHH
T ss_pred             eeechhHHHHhhHHHHHHHHHhcc
Confidence            556666666655555666655554

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.62  E-value=0.038  Score=31.21  Aligned_cols=25  Identities=24%  Similarity=0.321  Sum_probs=20.5

Q ss_pred             CCccccCCCCccccCHHHHHHHHhh
Q psy4796         190 KKKFVCFACPYATQYACYIKTHVMT  214 (274)
Q Consensus       190 ~~~~~C~~C~~~f~~~~~l~~H~~~  214 (274)
                      ...|.|..|++.|.+...|..|.++
T Consensus        13 ~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          13 GGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCEEecccccCccCCHHHHHHHHcc
Confidence            3458899999999999999998763

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.31  E-value=0.14  Score=24.12  Aligned_cols=26  Identities=15%  Similarity=0.107  Sum_probs=19.7

Q ss_pred             CCCCeeeccccCCcchhhHHHHHhhhc
Q psy4796          25 PPADVTCLHCSLTTPCVMKDMIRHGRL   51 (274)
Q Consensus        25 ~~~~~~C~~C~~~f~~~~~~l~~H~~~   51 (274)
                      .++.|.|..|-+.. +....+.+|+.+
T Consensus         4 lpkLyiCEfCLKYm-ks~~~l~RH~~K   29 (33)
T d1m36a_           4 LPKLYLCEFCLKYM-KSRTILQQHMKK   29 (33)
T ss_dssp             CCCCEECSSSCCEE-SCHHHHHHHHHH
T ss_pred             CCeeeeehhhhhhh-CCHHHHHHHHHh
Confidence            35668888888888 888888888763

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.31  E-value=0.056  Score=29.57  Aligned_cols=27  Identities=22%  Similarity=0.524  Sum_probs=23.6

Q ss_pred             CCceecCCCCccCCChhHHHHHHhhhc
Q psy4796         246 EREYACGKCAYRTAALPDLKLHLKNMH  272 (274)
Q Consensus       246 ~~~~~C~~C~~~f~~~~~l~~H~~~~H  272 (274)
                      ...|+|..|...|.+...|..|+..|-
T Consensus        16 s~~yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          16 NSTYQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CceeeechhHHHHhhHHHHHHHHHhcc
Confidence            345999999999999999999987764

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=87.77  E-value=0.27  Score=21.59  Aligned_cols=24  Identities=25%  Similarity=0.724  Sum_probs=15.6

Q ss_pred             eecC--CCCccCCChhHHHHHHhhhc
Q psy4796         249 YACG--KCAYRTAALPDLKLHLKNMH  272 (274)
Q Consensus       249 ~~C~--~C~~~f~~~~~l~~H~~~~H  272 (274)
                      |.|.  -|...|.+++++.+|..+-|
T Consensus         3 f~cdsd~cdl~fttkanmkkhfnrfh   28 (31)
T d1tf3a3           3 FTCDSDGCDLRFTTKANMKKHFNRFH   28 (31)
T ss_dssp             EECSSSSCCCEESSHHHHHHHHHHHT
T ss_pred             ccccCCCcceEEeehHHHHHHHhhhc
Confidence            5552  37777777777777766554

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.53  E-value=1.2  Score=27.07  Aligned_cols=67  Identities=19%  Similarity=0.136  Sum_probs=37.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCeeeccccCCcchhhHHHHHhhhccccccccccCCcceecccccccccChHHHHHHHhh
Q psy4796           7 DEDSSGLLSGQDKASPGPPPADVTCLHCSLTTPCVMKDMIRHGRLCEFNSVVTSAKLQFLCLFCSYVATARIAIKNHLSS   86 (274)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   86 (274)
                      .+.++++....+..... .+..|.|++|+..| .++                      ..-+.|+.+|. ...+..++..
T Consensus         2 ~s~~~~~~~~~~~~~~~-~P~~f~CPI~~~lm-~dP----------------------V~~~~~~~ty~-r~~I~~~l~~   56 (98)
T d1wgma_           2 SSGSSGLQQQEEETYAD-ACDEFLDPIMSTLM-CDP----------------------VVLPSSRVTVD-RSTIARHLLS   56 (98)
T ss_dssp             CCSSCCSCCSCCCCCCS-CCTTTBCTTTCSBC-SSE----------------------EECTTTCCEEE-HHHHHHHTTT
T ss_pred             CCcccchhhhhHhhhcC-CcHHhCCcCchhHH-HHH----------------------Hhcccccchhh-HHHHHHHHHh
Confidence            34444554444443333 33459999999999 332                      22334455565 5667776643


Q ss_pred             cCCCCcccCCCCCcccC
Q psy4796          87 HLGWKPYKCPHCDHCFT  103 (274)
Q Consensus        87 h~~~~~~~C~~C~~~f~  103 (274)
                      .     ..|+.|+..+.
T Consensus        57 ~-----~~~P~~~~~l~   68 (98)
T d1wgma_          57 D-----QTDPFNRSPLT   68 (98)
T ss_dssp             S-----CBCTTTCSBCC
T ss_pred             c-----CCccccccccc
Confidence            2     35777776654

>d1wjpa1 g.37.1.1 (A:1-42) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.21  E-value=0.44  Score=22.68  Aligned_cols=30  Identities=23%  Similarity=0.301  Sum_probs=21.6

Q ss_pred             CCCCCCCCCeeeccccCCcchhhHHHHHhhh
Q psy4796          20 ASPGPPPADVTCLHCSLTTPCVMKDMIRHGR   50 (274)
Q Consensus        20 ~~~~~~~~~~~C~~C~~~f~~~~~~l~~H~~   50 (274)
                      .++......|.|..|+..| ...-+--.|.+
T Consensus         8 a~pvenke~y~crlcnakl-~slleqgnher   37 (42)
T d1wjpa1           8 ASPVENKEVYQCRLCNAKL-SSLLEQGSHER   37 (42)
T ss_dssp             CCCCCCCCCCBCTTTCCBC-SSHHHHHHHHH
T ss_pred             CCcccccceeeeeehhhhH-HHHHHcccHHh
Confidence            3344445579999999999 77766666765

>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CHY zinc finger-like
superfamily: CHY zinc finger-like
family: CHY zinc finger
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.31  E-value=0.28  Score=28.28  Aligned_cols=12  Identities=17%  Similarity=0.529  Sum_probs=6.6

Q ss_pred             Ccceeccccccc
Q psy4796          62 KLQFLCLFCSYV   73 (274)
Q Consensus        62 ~~~~~C~~C~~~   73 (274)
                      ...+.|..|+..
T Consensus        49 ~~~l~CH~Cg~~   60 (74)
T d2dkta1          49 VKEVQCINCEKL   60 (74)
T ss_dssp             CCCEEESSSCCE
T ss_pred             CCEEEeccCCCc
Confidence            344556666654

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.28  E-value=0.38  Score=22.67  Aligned_cols=21  Identities=24%  Similarity=0.379  Sum_probs=13.1

Q ss_pred             CCCCCcccCChhHHHHHHhhh
Q psy4796          95 CPHCDHCFTQKVVLQRHLLTH  115 (274)
Q Consensus        95 C~~C~~~f~~~~~l~~H~~~h  115 (274)
                      |..|+..|.+...+..|.+..
T Consensus        11 C~~CDI~Fn~~~T~~aHKk~Y   31 (36)
T d1fu9a_          11 CSTCDISFNYVKTYLAHKQFY   31 (36)
T ss_dssp             ETTTTEECSSHHHHHHHHHHT
T ss_pred             HhhCCceehhHHHHHHHHHhc
Confidence            666666666666666665543

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=84.58  E-value=0.38  Score=22.33  Aligned_cols=22  Identities=14%  Similarity=0.304  Sum_probs=11.3

Q ss_pred             ccccCCCCccccCHHHHHHHHh
Q psy4796         192 KFVCFACPYATQYACYIKTHVM  213 (274)
Q Consensus       192 ~~~C~~C~~~f~~~~~l~~H~~  213 (274)
                      .|.|.+|.+.+...+++-+|..
T Consensus         8 ~yRC~~C~r~YTHISNFCRHyv   29 (37)
T d2drpa1           8 TYRCKVCSRVYTHISNFCRHYV   29 (37)
T ss_dssp             EEECTTTCCEESSHHHHHHHHH
T ss_pred             EEEeehhhHHHHHHHHHHHHHH
Confidence            3555555555555555555543

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.35  E-value=0.51  Score=22.08  Aligned_cols=24  Identities=25%  Similarity=0.434  Sum_probs=17.7

Q ss_pred             CceecCCCCccCCChhHHHHHHhh
Q psy4796         247 REYACGKCAYRTAALPDLKLHLKN  270 (274)
Q Consensus       247 ~~~~C~~C~~~f~~~~~l~~H~~~  270 (274)
                      +.|.|..|-+-..+...+.+|+..
T Consensus         6 kLyiCEfCLKYmks~~~l~RH~~K   29 (33)
T d1m36a_           6 KLYLCEFCLKYMKSRTILQQHMKK   29 (33)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHH
T ss_pred             eeeeehhhhhhhCCHHHHHHHHHh
Confidence            457777787777777777777754

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.76  E-value=0.3  Score=24.85  Aligned_cols=20  Identities=20%  Similarity=0.446  Sum_probs=15.9

Q ss_pred             eecCCCCccCCChhHHHHHH
Q psy4796         249 YACGKCAYRTAALPDLKLHL  268 (274)
Q Consensus       249 ~~C~~C~~~f~~~~~l~~H~  268 (274)
                      -.|++|+..++.+.+++.|+
T Consensus         7 ~eC~lC~vKYs~~~SvrdHi   26 (48)
T d2yrka1           7 PECTLCGVKYSARLSIRDHI   26 (48)
T ss_dssp             SCCTTTTCCCCSSSCHHHHH
T ss_pred             ccCcccceeeeeecchHhhh
Confidence            56888888888888888776

>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 292, ZNF292
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.24  E-value=0.6  Score=24.10  Aligned_cols=29  Identities=28%  Similarity=0.468  Sum_probs=21.7

Q ss_pred             CCCceecCC--CCccCCChhHHHHHHhhhcC
Q psy4796         245 TEREYACGK--CAYRTAALPDLKLHLKNMHL  273 (274)
Q Consensus       245 ~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~  273 (274)
                      .-+||.|..  |...|.-..+|..|.+.+|.
T Consensus        17 pyrpyrcvhqgc~aaftiq~nlilhy~avh~   47 (61)
T d1x3ca1          17 PYRPYRCVHQGCFAAFTIQQNLILHYQAVHK   47 (61)
T ss_dssp             SSCSCBCCSTTCCCBCSSHHHHHHHHHHHSS
T ss_pred             CCCceeeeccchhhhhhhhhhHHHHHHHHhh
Confidence            346778854  88888888888888877764

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=81.17  E-value=0.44  Score=23.13  Aligned_cols=32  Identities=6%  Similarity=-0.249  Sum_probs=18.1

Q ss_pred             eecccccccccChHHHHHHHhhcCCCCcccCCCCCcccCC
Q psy4796          65 FLCLFCSYVATARIAIKNHLSSHLGWKPYKCPHCDHCFTQ  104 (274)
Q Consensus        65 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~  104 (274)
                      +.|+.||..|..        ........-.|..|+..+..
T Consensus         3 ~vc~~cG~~Yh~--------~~~pPk~~g~CD~cg~~L~q   34 (37)
T d2ak3a2           3 WIHPGSGRVYNI--------EFNPPKTMGIDDLTGEPLVQ   34 (37)
T ss_dssp             EEETTTTEEEET--------TTBCCSSTTBCTTTCCBCBC
T ss_pred             eeeCCcCChhhh--------ccCCccccCCccCCCCcCEe
Confidence            457777777642        22344455667777665443

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.51  E-value=0.5  Score=20.65  Aligned_cols=16  Identities=25%  Similarity=0.235  Sum_probs=8.2

Q ss_pred             CCccCCChhHHHHHHh
Q psy4796         254 CAYRTAALPDLKLHLK  269 (274)
Q Consensus       254 C~~~f~~~~~l~~H~~  269 (274)
                      |++.|+++..|.-|.+
T Consensus         8 c~kifsnrqylnhh~k   23 (30)
T d2dlka1           8 CGRIFSNRQYLNHHKK   23 (30)
T ss_dssp             TCCEESSHHHHHHHHH
T ss_pred             chhhhccHHHHHhHHH
Confidence            5555555555555443