Psyllid ID: psy4802

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
MIPQAKPCRESAEIVYALLILEGHLWPSKYWLWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQFSPIL
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHccEEEccccccccHHHHcccccccccccccEEEEEEEHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHEHEcccEcccccEcHHHHHHHcHHHHHcccccEEEEEEcHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mipqakpcreSAEIVYALLILEGHLWPSKYWLWMEKFFNIkcrtsgkipdaVVLVTTVRALkmhgggpsvvsgqplkpeytevststehqgcikgrgqfspil
Flexible Loop (DISEMBL)
mipqakpcreSAEIVYALLILEGHLWPSKYWLWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMhgggpsvvsgqplKPEYTevststehqgcikgrgqfspil
Low Complexity Region (SEG)
MIPQAKPCRESAEIVYALLILEGHLWPSKYWLWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQFSPIL
Disordered region (IsUnstruct)
***********AEIVYALLILEGHLWPSKYWLWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMH***************************************
Disordered Region (DISOPRED)
*I****PCRESAEIVYALLILEGHLWPSKYWLWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQFSPIL
Disordered Region (DISEMBL)
MIPQAKPCRESAEIVYALLILEGHLWPSKYWLWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKP************GCIKGRGQFSPIL
Disordered Region (DISPRO)
***QAKPCRESAEIVYALLILEGHLWPSKYWLWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQFSPIL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIPQAKPCRESAEIVYALLILEGHLWPSKYWLWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQFSPIL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	103	2.2.26 [Sep-21-2011]
Q6UB35	978	Monofunctional C1-tetrahy	yes	N/A	0.572	0.060	0.694	5e-18
Q3V3R1	977	Monofunctional C1-tetrahy	yes	N/A	0.592	0.062	0.672	1e-17
Q0VCR7	975	Monofunctional C1-tetrahy	yes	N/A	0.592	0.062	0.655	3e-17
Q3Z8K3	597	Formate--tetrahydrofolate	yes	N/A	0.563	0.097	0.603	1e-14
Q3ZX40	597	Formate--tetrahydrofolate	yes	N/A	0.563	0.097	0.603	2e-14
Q922D8	935	C-1-tetrahydrofolate synt	no	N/A	0.475	0.052	0.734	2e-14
P27653	935	C-1-tetrahydrofolate synt	yes	N/A	0.475	0.052	0.734	2e-14
Q5R8P0	935	C-1-tetrahydrofolate synt	no	N/A	0.475	0.052	0.714	8e-14
P09440	975	C-1-tetrahydrofolate synt	yes	N/A	0.466	0.049	0.708	9e-14
P07245	946	C-1-tetrahydrofolate synt	no	N/A	0.466	0.050	0.708	9e-14

>sp|Q6UB35|C1TM_HUMAN Monofunctional C1-tetrahydrofolate synthase, mitochondrial OS=Homo sapiens GN=MTHFD1L PE=1 SV=1

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/59 (69%), Positives = 45/59 (76%)

Query: 34  MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGC 92
           MEKFFNIKCR SG +P+ VVLV TVRALKMHGGGPSV +G PLK EYTE +      GC
Sbjct: 720 MEKFFNIKCRASGLVPNVVVLVATVRALKMHGGGPSVTAGVPLKKEYTEENIQLVADGC 778

May provide the missing metabolic reaction required to link the mitochondria and the cytoplasm in the mammalian model of one-carbon folate metabolism in embryonic an transformed cells complementing thus the enzymatic activities of MTHFD2.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 4EC: .EC: 3

>sp|Q3V3R1|C1TM_MOUSE Monofunctional C1-tetrahydrofolate synthase, mitochondrial OS=Mus musculus GN=Mthfd1l PE=1 SV=2

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/61 (67%), Positives = 46/61 (75%)

Query: 32  LWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQG 91
           + MEKFFNIKCR SG +P+ VVLV TVRALKMHGGGPSV +G PLK EYTE +      G
Sbjct: 717 IGMEKFFNIKCRASGLVPNVVVLVATVRALKMHGGGPSVTAGVPLKKEYTEENIQLVADG 776

Query: 92  C 92
           C
Sbjct: 777 C 777

May provide the missing metabolic reaction required to link the mitochondria and the cytoplasm in the mammalian model of one-carbon folate metabolism in embryonic an transformed cells complementing thus the enzymatic activities of MTHFD2.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 3

>sp|Q0VCR7|C1TM_BOVIN Monofunctional C1-tetrahydrofolate synthase, mitochondrial OS=Bos taurus GN=MTHFD1L PE=2 SV=2

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 45/61 (73%)

Query: 32  LWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQG 91
           + MEKFFNIKCR SG +P  VVLV TVRALKMHGGGPSV +G PL+ EYTE +      G
Sbjct: 715 IGMEKFFNIKCRASGLVPSVVVLVATVRALKMHGGGPSVTAGVPLRKEYTEENLQLVADG 774

Query: 92  C 92
           C
Sbjct: 775 C 775

May provide the missing metabolic reaction required to link the mitochondria and the cytoplasm in the mammalian model of one-carbon folate metabolism in embryonic an transformed cells complementing thus the enzymatic activities of MTHFD2.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 3

>sp|Q3Z8K3|FTHS_DEHE1 Formate--tetrahydrofolate ligase OS=Dehalococcoides ethenogenes (strain 195) GN=fhs1 PE=3 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 40/58 (68%)

Query: 35  EKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGC 92
           EKF+NIKCR SG  PD  V+V TVRALKMHGGGP V  G PL P YT  + +   +GC
Sbjct: 340 EKFWNIKCRLSGLKPDCAVIVATVRALKMHGGGPKVTPGAPLDPAYTTPNAALVEKGC 397

Dehalococcoides ethenogenes (strain 195) (taxid: 243164)

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 3

>sp|Q3ZX40|FTHS_DEHSC Formate--tetrahydrofolate ligase OS=Dehalococcoides sp. (strain CBDB1) GN=fhs PE=3 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 39/58 (67%)

Query: 35  EKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGC 92
           EKF+NIKCR SG  PD  V+V T RALKMHGGGP V  G PL P YT  +T    +GC
Sbjct: 340 EKFWNIKCRLSGLKPDCAVIVVTARALKMHGGGPKVTPGAPLDPAYTTPNTKLVEKGC 397

Dehalococcoides sp. (strain CBDB1) (taxid: 255470)

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 3

>sp|Q922D8|C1TC_MOUSE C-1-tetrahydrofolate synthase, cytoplasmic OS=Mus musculus GN=Mthfd1 PE=1 SV=4

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/49 (73%), Positives = 38/49 (77%)

Query: 34  MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTE 82
           MEKFFNIKCR SG  P  VVLV TVRALKMHGGGP+V +G PL   YTE
Sbjct: 677 MEKFFNIKCRYSGLQPHVVVLVATVRALKMHGGGPTVTAGLPLPKAYTE 725

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 3

>sp|P27653|C1TC_RAT C-1-tetrahydrofolate synthase, cytoplasmic OS=Rattus norvegicus GN=Mthfd1 PE=1 SV=3

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/49 (73%), Positives = 38/49 (77%)

Query: 34  MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTE 82
           MEKFFNIKCR SG  P  VVLV TVRALKMHGGGP+V +G PL   YTE
Sbjct: 677 MEKFFNIKCRYSGLQPHVVVLVATVRALKMHGGGPTVTAGLPLPKAYTE 725

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 3

>sp|Q5R8P0|C1TC_PONAB C-1-tetrahydrofolate synthase, cytoplasmic OS=Pongo abelii GN=MTHFD1 PE=2 SV=3

 Score = 75.5 bits (184), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/49 (71%), Positives = 37/49 (75%)

Query: 34  MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTE 82
           MEKFFNIKCR SG  P  VVLV TVRALKMHGGGP+V +G PL   Y E
Sbjct: 677 MEKFFNIKCRYSGLCPHVVVLVATVRALKMHGGGPTVTAGLPLPKAYIE 725

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 3

>sp|P09440|C1TM_YEAST C-1-tetrahydrofolate synthase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MIS1 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/48 (70%), Positives = 39/48 (81%)

Query: 35  EKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTE 82
           E+FF+IKCR+SG +PDAVVLV TVRALK HGG P+V  GQ L  EYTE
Sbjct: 719 ERFFDIKCRSSGLVPDAVVLVATVRALKSHGGAPNVKPGQSLPKEYTE 766

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 3

>sp|P07245|C1TC_YEAST C-1-tetrahydrofolate synthase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ADE3 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/48 (70%), Positives = 37/48 (77%)

Query: 35  EKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTE 82
           E+FFNIKCR+SG  P+AVVLV TVRALK HGG P V  GQPL   YTE
Sbjct: 690 ERFFNIKCRSSGLTPNAVVLVATVRALKSHGGAPDVKPGQPLPSAYTE 737

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
345305799	1027	PREDICTED: monofunctional C1-tetrahydrof	0.572	0.057	0.728	5e-17
355705416	901	methylenetetrahydrofolate dehydrogenase	0.572	0.065	0.711	5e-17
296199457	896	PREDICTED: monofunctional C1-tetrahydrof	0.572	0.065	0.711	8e-17
291397143	978	PREDICTED: methylenetetrahydrofolate deh	0.572	0.060	0.711	8e-17
73946132	923	PREDICTED: monofunctional C1-tetrahydrof	0.572	0.063	0.711	9e-17
403306185	1052	PREDICTED: monofunctional C1-tetrahydrof	0.592	0.057	0.688	1e-16
281343268	904	hypothetical protein PANDA_017254 [Ailur	0.572	0.065	0.694	1e-16
14250393	366	MTHFD1L protein [Homo sapiens]	0.572	0.161	0.694	2e-16
10437189	366	unnamed protein product [Homo sapiens]	0.572	0.161	0.694	2e-16
355561977	907	hypothetical protein EGK_15253, partial	0.572	0.065	0.694	2e-16

>gi|345305799|ref|XP_003428379.1| PREDICTED: monofunctional C1-tetrahydrofolate synthase, mitochondrial-like [Ornithorhynchus anatinus]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/59 (72%), Positives = 46/59 (77%)

Query: 34  MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGC 92
           MEKFFNIKCRTSG IP AVVLV TVRALKMHGGGP+V +G PLK EYTE +      GC
Sbjct: 769 MEKFFNIKCRTSGLIPSAVVLVATVRALKMHGGGPNVTAGVPLKKEYTEENLQLVADGC 827

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355705416|gb|AES02310.1| methylenetetrahydrofolate dehydrogenase 1-like protein [Mustela putorius furo]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/59 (71%), Positives = 46/59 (77%)

Query: 34  MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGC 92
           MEKFFNIKCR SG +P+AVVLV TVRALKMHGGGPSV +G PLK EYTE +      GC
Sbjct: 644 MEKFFNIKCRASGLVPNAVVLVATVRALKMHGGGPSVTAGVPLKKEYTEENIQLVADGC 702

Source: Mustela putorius furo

Species: Mustela putorius

Genus: Mustela

Family: Mustelidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|296199457|ref|XP_002747184.1| PREDICTED: monofunctional C1-tetrahydrofolate synthase, mitochondrial [Callithrix jacchus]

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/59 (71%), Positives = 45/59 (76%)

Query: 34  MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGC 92
           MEKFFNIKCR SG +PD VVLV TVRALKMHGGGPSV +G PLK EYTE +      GC
Sbjct: 638 MEKFFNIKCRASGLVPDVVVLVATVRALKMHGGGPSVTAGVPLKKEYTEENIQLVADGC 696

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291397143|ref|XP_002715037.1| PREDICTED: methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like [Oryctolagus cuniculus]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/59 (71%), Positives = 46/59 (77%)

Query: 34  MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGC 92
           MEKFFNIKCR SG +P+AVVLV TVRALKMHGGGPSV+ G PLK EYTE +      GC
Sbjct: 720 MEKFFNIKCRASGLVPNAVVLVATVRALKMHGGGPSVIPGVPLKKEYTEENIQLVADGC 778

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|73946132|ref|XP_533450.2| PREDICTED: monofunctional C1-tetrahydrofolate synthase, mitochondrial [Canis lupus familiaris]

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 42/59 (71%), Positives = 46/59 (77%)

Query: 34  MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGC 92
           MEKFFNIKCR SG +P+AVVLV TVRALKMHGGGPSV +G PLK EYTE +      GC
Sbjct: 665 MEKFFNIKCRASGLVPNAVVLVATVRALKMHGGGPSVTAGVPLKREYTEENIQLVADGC 723

Source: Canis lupus familiaris

Species: Canis lupus

Genus: Canis

Family: Canidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|403306185|ref|XP_003943622.1| PREDICTED: monofunctional C1-tetrahydrofolate synthase, mitochondrial [Saimiri boliviensis boliviensis]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/61 (68%), Positives = 46/61 (75%)

Query: 32  LWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQG 91
           + MEKFFNIKCR SG +PD VVLV TVRALKMHGGGPSV +G PLK EYTE +      G
Sbjct: 684 IGMEKFFNIKCRASGLVPDVVVLVATVRALKMHGGGPSVTAGVPLKKEYTEENIQLVADG 743

Query: 92  C 92
           C
Sbjct: 744 C 744

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|281343268|gb|EFB18852.1| hypothetical protein PANDA_017254 [Ailuropoda melanoleuca]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/59 (69%), Positives = 45/59 (76%)

Query: 34  MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGC 92
           MEKFFNIKCR SG +P+AVVLV TVRALKMHGGGP V +G PLK EYTE +      GC
Sbjct: 646 MEKFFNIKCRASGLVPNAVVLVATVRALKMHGGGPGVTAGVPLKKEYTEENVQLVADGC 704

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|14250393|gb|AAH08629.1| MTHFD1L protein [Homo sapiens]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/59 (69%), Positives = 45/59 (76%)

Query: 34  MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGC 92
           MEKFFNIKCR SG +P+ VVLV TVRALKMHGGGPSV +G PLK EYTE +      GC
Sbjct: 108 MEKFFNIKCRASGLVPNVVVLVATVRALKMHGGGPSVTAGVPLKKEYTEENIQLVADGC 166

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|10437189|dbj|BAB15009.1| unnamed protein product [Homo sapiens]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/59 (69%), Positives = 45/59 (76%)

Query: 34  MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGC 92
           MEKFFNIKCR SG +P+ VVLV TVRALKMHGGGPSV +G PLK EYTE +      GC
Sbjct: 108 MEKFFNIKCRASGLVPNVVVLVATVRALKMHGGGPSVTAGVPLKKEYTEENIQLVADGC 166

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355561977|gb|EHH18609.1| hypothetical protein EGK_15253, partial [Macaca mulatta]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/59 (69%), Positives = 45/59 (76%)

Query: 34  MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGC 92
           MEKFFNIKCR SG +P+ VVLV TVRALKMHGGGPSV +G PLK EYTE +      GC
Sbjct: 648 MEKFFNIKCRASGLVPNVVVLVATVRALKMHGGGPSVTAGVPLKKEYTEENIQLVADGC 706

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
UNIPROTKB|F1S7V9	259	LOC100154722 "Uncharacterized	0.572	0.227	0.694	1.6e-17
UNIPROTKB|F1PH90	868	MTHFD1L "Uncharacterized prote	0.572	0.067	0.711	1.3e-16
MGI|MGI:1924836	977	Mthfd1l "methylenetetrahydrofo	0.572	0.060	0.694	3.2e-16
UNIPROTKB|Q6UB35	978	MTHFD1L "Monofunctional C1-tet	0.572	0.060	0.694	3.2e-16
UNIPROTKB|F1NCS6	861	MTHFD1L "Uncharacterized prote	0.572	0.068	0.694	4.3e-16
UNIPROTKB|E1B884	954	MTHFD1L "Monofunctional C1-tet	0.572	0.061	0.677	8.3e-16
UNIPROTKB|Q0VCR7	975	MTHFD1L "Monofunctional C1-tet	0.572	0.060	0.677	8.5e-16
WB|WBGene00019492	640	K07E3.4 [Caenorhabditis elegan	0.572	0.092	0.694	2.5e-15
ZFIN|ZDB-GENE-041210-311	650	si:ch211-266i18.6 "si:ch211-26	0.572	0.090	0.644	8.8e-15
ZFIN|ZDB-GENE-020905-4	934	mthfd1b "methylenetetrahydrofo	0.631	0.069	0.630	1.2e-14

UNIPROTKB|F1S7V9 LOC100154722 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 41/59 (69%), Positives = 45/59 (76%)

Query:    34 MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGC 92
             MEKFFNIKCR SG +P+ VVLV TVRALKMHGGGPSV +G PLK EYTE +      GC
Sbjct:     1 MEKFFNIKCRASGLVPNVVVLVATVRALKMHGGGPSVTAGVPLKKEYTEENLQLVADGC 59

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=IEA

UNIPROTKB|F1PH90 MTHFD1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 217 (81.4 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 42/59 (71%), Positives = 46/59 (77%)

Query:    34 MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGC 92
             MEKFFNIKCR SG +P+AVVLV TVRALKMHGGGPSV +G PLK EYTE +      GC
Sbjct:   610 MEKFFNIKCRASGLVPNAVVLVATVRALKMHGGGPSVTAGVPLKREYTEENIQLVADGC 668

GO:0046653 "tetrahydrofolate metabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0015942 "formate metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=IEA

MGI|MGI:1924836 Mthfd1l "methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like" [Mus musculus (taxid:10090)]

 Score = 214 (80.4 bits), Expect = 3.2e-16, P = 3.2e-16
 Identities = 41/59 (69%), Positives = 45/59 (76%)

Query:    34 MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGC 92
             MEKFFNIKCR SG +P+ VVLV TVRALKMHGGGPSV +G PLK EYTE +      GC
Sbjct:   719 MEKFFNIKCRASGLVPNVVVLVATVRALKMHGGGPSVTAGVPLKKEYTEENIQLVADGC 777

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=ISO;IBA

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA

GO:0005524 "ATP binding" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0006730 "one-carbon metabolic process" evidence=IBA

GO:0006760 "folic acid-containing compound metabolic process" evidence=ISO

GO:0009257 "10-formyltetrahydrofolate biosynthetic process" evidence=ISO

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0015942 "formate metabolic process" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0046653 "tetrahydrofolate metabolic process" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|Q6UB35 MTHFD1L "Monofunctional C1-tetrahydrofolate synthase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 214 (80.4 bits), Expect = 3.2e-16, P = 3.2e-16
 Identities = 41/59 (69%), Positives = 45/59 (76%)

Query:    34 MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGC 92
             MEKFFNIKCR SG +P+ VVLV TVRALKMHGGGPSV +G PLK EYTE +      GC
Sbjct:   720 MEKFFNIKCRASGLVPNVVVLVATVRALKMHGGGPSVTAGVPLKKEYTEENIQLVADGC 778

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0004477 "methenyltetrahydrofolate cyclohydrolase activity" evidence=IBA

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0006730 "one-carbon metabolic process" evidence=IBA

GO:0035999 "tetrahydrofolate interconversion" evidence=IEA

GO:0006760 "folic acid-containing compound metabolic process" evidence=IDA

GO:0046653 "tetrahydrofolate metabolic process" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0015942 "formate metabolic process" evidence=IDA

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

UNIPROTKB|F1NCS6 MTHFD1L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 212 (79.7 bits), Expect = 4.3e-16, P = 4.3e-16
 Identities = 41/59 (69%), Positives = 44/59 (74%)

Query:    34 MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGC 92
             MEKFFNIKCR SG +P  VVLV TVRALKMHGGGPSV +G PLK EYTE +      GC
Sbjct:   647 MEKFFNIKCRASGLVPSVVVLVATVRALKMHGGGPSVSAGAPLKKEYTEENLQLVADGC 705

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=IEA

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

UNIPROTKB|E1B884 MTHFD1L "Monofunctional C1-tetrahydrofolate synthase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 210 (79.0 bits), Expect = 8.3e-16, P = 8.3e-16
 Identities = 40/59 (67%), Positives = 44/59 (74%)

Query:    34 MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGC 92
             MEKFFNIKCR SG +P  VVLV TVRALKMHGGGPSV +G PL+ EYTE +      GC
Sbjct:   717 MEKFFNIKCRASGLVPSVVVLVATVRALKMHGGGPSVTAGVPLRKEYTEENLQLVADGC 775

GO:0046653 "tetrahydrofolate metabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0015942 "formate metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=IEA

UNIPROTKB|Q0VCR7 MTHFD1L "Monofunctional C1-tetrahydrofolate synthase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 210 (79.0 bits), Expect = 8.5e-16, P = 8.5e-16
 Identities = 40/59 (67%), Positives = 44/59 (74%)

Query:    34 MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGC 92
             MEKFFNIKCR SG +P  VVLV TVRALKMHGGGPSV +G PL+ EYTE +      GC
Sbjct:   717 MEKFFNIKCRASGLVPSVVVLVATVRALKMHGGGPSVTAGVPLRKEYTEENLQLVADGC 775

GO:0006730 "one-carbon metabolic process" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0005739 "mitochondrion" evidence=IBA

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IBA

GO:0004477 "methenyltetrahydrofolate cyclohydrolase activity" evidence=IBA

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=IBA

GO:0035999 "tetrahydrofolate interconversion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

WB|WBGene00019492 K07E3.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 203 (76.5 bits), Expect = 2.5e-15, P = 2.5e-15
 Identities = 41/59 (69%), Positives = 44/59 (74%)

Query:    34 MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGC 92
             MEKFFNIKCR SG  P AVVLV TVRALKMHGGGPSVV+G PLK EY + +      GC
Sbjct:   380 MEKFFNIKCRYSGLQPSAVVLVATVRALKMHGGGPSVVAGAPLKHEYLDENIPLVEGGC 438

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

ZFIN|ZDB-GENE-041210-311 si:ch211-266i18.6 "si:ch211-266i18.6" [Danio rerio (taxid:7955)]

 Score = 198 (74.8 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 38/59 (64%), Positives = 43/59 (72%)

Query:    34 MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGC 92
             MEKFFNIKCRTSG  P+ VVLV T+RALKMHGGGP+V +G PL  EY E +      GC
Sbjct:   392 MEKFFNIKCRTSGLRPNVVVLVATIRALKMHGGGPNVTAGAPLPKEYIEENLQLVADGC 450

GO:0003824 "catalytic activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=IEA

ZFIN|ZDB-GENE-020905-4 mthfd1b "methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1b" [Danio rerio (taxid:7955)]

 Score = 199 (75.1 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 41/65 (63%), Positives = 45/65 (69%)

Query:    34 MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCI 93
             MEKFFNIKCR SG  P AVVLV TVRALKMHGGGP+V +G PL  EY E + +    GC 
Sbjct:   676 MEKFFNIKCRYSGLKPHAVVLVATVRALKMHGGGPTVTAGTPLPKEYIEENLTLLEAGCA 735

Query:    94 KGRGQ 98
               R Q
Sbjct:   736 NMRKQ 740

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=IEA;IBA

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA;IBA

GO:0005524 "ATP binding" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IBA

GO:0004477 "methenyltetrahydrofolate cyclohydrolase activity" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P09440	C1TM_YEAST	6, ., 3, ., 4, ., 3	0.7083	0.4660	0.0492	yes	N/A
Q3ZX40	FTHS_DEHSC	6, ., 3, ., 4, ., 3	0.6034	0.5631	0.0971	yes	N/A
A4J0S6	FTHS_DESRM	6, ., 3, ., 4, ., 3	0.5245	0.5922	0.1075	yes	N/A
Q1MPZ9	FTHS_LAWIP	6, ., 3, ., 4, ., 3	0.5147	0.6407	0.1116	yes	N/A
A9WIW3	FTHS_CHLAA	6, ., 3, ., 4, ., 3	0.5909	0.4271	0.0769	yes	N/A
A5UPV2	FTHS_ROSS1	6, ., 3, ., 4, ., 3	0.6041	0.4660	0.0851	yes	N/A
B8GC03	FTHS_CHLAD	6, ., 3, ., 4, ., 3	0.6190	0.4077	0.0734	yes	N/A
Q6ABS5	FTHS_PROAC	6, ., 3, ., 4, ., 3	0.6041	0.4660	0.0852	yes	N/A
Q0BW57	FTHS_GRABC	6, ., 3, ., 4, ., 3	0.5882	0.4563	0.0821	yes	N/A
Q6UB35	C1TM_HUMAN	6, ., 3, ., 4, ., 3	0.6949	0.5728	0.0603	yes	N/A
A7NGQ9	FTHS_ROSCS	6, ., 3, ., 4, ., 3	0.6041	0.4660	0.0851	yes	N/A
Q3Z8K3	FTHS_DEHE1	6, ., 3, ., 4, ., 3	0.6034	0.5631	0.0971	yes	N/A
A0LLR3	FTHS_SYNFM	6, ., 3, ., 4, ., 3	0.5254	0.5728	0.1005	yes	N/A
B8FGU7	FTHS_DESAA	6, ., 3, ., 4, ., 3	0.5344	0.5631	0.0988	yes	N/A
O43007	C1TM_SCHPO	6, ., 3, ., 4, ., 3	0.5593	0.5728	0.0606	yes	N/A
B5YJE1	FTHS_THEYD	6, ., 3, ., 4, ., 3	0.5555	0.4951	0.0865	yes	N/A
A8ZZJ0	FTHS_DESOH	6, ., 3, ., 4, ., 3	0.5263	0.5533	0.0971	yes	N/A
Q0VCR7	C1TM_BOVIN	6, ., 3, ., 4, ., 3	0.6557	0.5922	0.0625	yes	N/A
B9LKW0	FTHS_CHLSY	6, ., 3, ., 4, ., 3	0.5909	0.4271	0.0769	yes	N/A
A4FL80	FTHS_SACEN	6, ., 3, ., 4, ., 3	0.7111	0.4368	0.0796	yes	N/A
Q3V3R1	C1TM_MOUSE	6, ., 3, ., 4, ., 3	0.6721	0.5922	0.0624	yes	N/A
O96553	C1TC_DROME	6, ., 3, ., 4, ., 3	0.6034	0.5631	0.0599	yes	N/A
Q9SPK5	FTHS_ARATH	6, ., 3, ., 4, ., 3	0.5593	0.5728	0.0930	yes	N/A
P27653	C1TC_RAT	6, ., 3, ., 4, ., 3	0.7346	0.4757	0.0524	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	103
PRK13507	587	PRK13507, PRK13507, formate--tetrahydrofolate liga	5e-23
cd00477	524	cd00477, FTHFS, Formyltetrahydrofolate synthetase	8e-22
pfam01268	557	pfam01268, FTHFS, Formate--tetrahydrofolate ligase	5e-21
PLN02759	637	PLN02759, PLN02759, Formate--tetrahydrofolate liga	2e-20
PTZ00386	625	PTZ00386, PTZ00386, formyl tetrahydrofolate synthe	3e-18
COG2759	554	COG2759, MIS1, Formyltetrahydrofolate synthetase [	5e-18
PRK13505	557	PRK13505, PRK13505, formate--tetrahydrofolate liga	3e-17
PRK13506	578	PRK13506, PRK13506, formate--tetrahydrofolate liga	7e-14

>gnl|CDD|184098 PRK13507, PRK13507, formate--tetrahydrofolate ligase; Provisional

 Score = 91.3 bits (227), Expect = 5e-23
 Identities = 34/58 (58%), Positives = 42/58 (72%)

Query: 35  EKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGC 92
           EKF+N+KCR SG  PD  V+V T+RALKMHGGGP VV G+PL  EYT+ +     +GC
Sbjct: 330 EKFWNLKCRLSGLKPDCAVIVATIRALKMHGGGPKVVPGKPLPEEYTKENVGLVEKGC 387

Length = 587

>gnl|CDD|238266 cd00477, FTHFS, Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate

 Score = 87.6 bits (218), Expect = 8e-22
 Identities = 31/41 (75%), Positives = 31/41 (75%)

Query: 34  MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQ 74
            EKFFNIKCR SG  PDAVVLV TVRALKMHGG P V  G 
Sbjct: 291 AEKFFNIKCRYSGLKPDAVVLVATVRALKMHGGVPKVTLGL 331

FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP. Length = 524

>gnl|CDD|216402 pfam01268, FTHFS, Formate--tetrahydrofolate ligase

 Score = 85.6 bits (213), Expect = 5e-21
 Identities = 27/35 (77%), Positives = 28/35 (80%)

Query: 34  MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGP 68
            EKFF+IKCR SG  PDAVVLV TVRALKMHGG  
Sbjct: 307 AEKFFDIKCRKSGLKPDAVVLVATVRALKMHGGVA 341

Length = 557

>gnl|CDD|178359 PLN02759, PLN02759, Formate--tetrahydrofolate ligase

 Score = 83.7 bits (207), Expect = 2e-20
 Identities = 34/59 (57%), Positives = 39/59 (66%)

Query: 34  MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGC 92
            EKF NIKCR SG  P   V+V TVRALKMHGGGP+VV+G+PL   YT  +      GC
Sbjct: 378 TEKFMNIKCRYSGLKPQCAVIVATVRALKMHGGGPAVVAGKPLDHAYTTENVELVEAGC 436

Length = 637

>gnl|CDD|240394 PTZ00386, PTZ00386, formyl tetrahydrofolate synthetase; Provisional

 Score = 77.9 bits (192), Expect = 3e-18
 Identities = 30/41 (73%), Positives = 32/41 (78%)

Query: 34  MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQ 74
            EKFFNIKCRTSG  PDA VLV TVRALK HGG   VV+G+
Sbjct: 373 CEKFFNIKCRTSGLKPDAAVLVATVRALKFHGGVEPVVAGK 413

Length = 625

>gnl|CDD|225354 COG2759, MIS1, Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]

 Score = 76.9 bits (190), Expect = 5e-18
 Identities = 29/37 (78%), Positives = 31/37 (83%)

Query: 32  LWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGP 68
           L  EKFF+IKCR+SG  PDAVVLV TVRALKMHGG P
Sbjct: 303 LGAEKFFDIKCRSSGLKPDAVVLVATVRALKMHGGVP 339

Length = 554

>gnl|CDD|237403 PRK13505, PRK13505, formate--tetrahydrofolate ligase; Provisional

 Score = 75.2 bits (186), Expect = 3e-17
 Identities = 24/34 (70%), Positives = 27/34 (79%)

Query: 35  EKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGP 68
           EKF +IKCR +G  PDAVV+V TVRALKMHGG  
Sbjct: 309 EKFLDIKCRKAGLKPDAVVIVATVRALKMHGGVA 342

Length = 557

>gnl|CDD|237404 PRK13506, PRK13506, formate--tetrahydrofolate ligase; Provisional

 Score = 65.0 bits (159), Expect = 7e-14
 Identities = 24/43 (55%), Positives = 27/43 (62%)

Query: 34  MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPL 76
            EKF NIK R SGK PD  VLV T+RALK + G   +  GQ L
Sbjct: 321 FEKFCNIKARQSGKAPDCAVLVATLRALKANSGLYDLRPGQAL 363

Length = 578

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
PRK13506	578	formate--tetrahydrofolate ligase; Provisional	100.0
PRK13507	587	formate--tetrahydrofolate ligase; Provisional	100.0
PLN02759	637	Formate--tetrahydrofolate ligase	100.0
PF01268	557	FTHFS: Formate--tetrahydrofolate ligase; InterPro:	100.0
cd00477	524	FTHFS Formyltetrahydrofolate synthetase (FTHFS) ca	100.0
COG2759	554	MIS1 Formyltetrahydrofolate synthetase [Nucleotide	100.0
PRK13505	557	formate--tetrahydrofolate ligase; Provisional	100.0
PTZ00386	625	formyl tetrahydrofolate synthetase; Provisional	100.0
KOG4230|consensus	935		100.0

>PRK13506 formate--tetrahydrofolate ligase; Provisional

Probab=100.00  E-value=1.4e-47  Score=328.99  Aligned_cols=99  Identities=28%  Similarity=0.295  Sum_probs=97.4

Q ss_pred             CCCcchhHHHHHHHHHhhcceecccCc--ccchhhhcccccccCCCCCCeEEEEeehHHHHhhCCCCCCCCCCCCCCccC
Q psy4802           4 QAKPCRESAEIVYALLILEGHLWPSKY--WLWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYT   81 (103)
Q Consensus         4 ~~~~c~~~~~~~~~l~~~~~~~~~~~~--dLGaEKF~dIKcR~sGl~PdavVLVaTvRALK~HGG~~~~~~G~pl~~~~~   81 (103)
                      .||||||++||+.||+++||+||||||  |||||||||||||.+|++|||+|||||+||||||||++...+|+||+++|.
T Consensus       289 IAhG~nSviAt~~aLklaDyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~hGG~~~~~~g~pl~~~l~  368 (578)
T PRK13506        289 IAHGNSSIIADRIALKLADYVVTEGGFGSDMGFEKFCNIKARQSGKAPDCAVLVATLRALKANSGLYDLRPGQALPDSIN  368 (578)
T ss_pred             ccccchHHHHHHHHHhhcCeEEeeccccCCCCCceeeeeeeccCCCCCceEEEEEEeehHHhcCCCCCcccCcccchhcc
Confidence            589999999999999999999999999  999999999999999999999999999999999999989999999999999


Q ss_pred             cCCHHHHHHhHhhHHHhhccC
Q psy4802          82 EVSTSTEHQGCIKGRGQFSPI  102 (103)
Q Consensus        82 ~enl~al~kG~~NL~kHIeNi  102 (103)
                      +||+++|++||+||+|||+|+
T Consensus       369 ~en~~al~~G~~NL~~Hi~n~  389 (578)
T PRK13506        369 APDQARLEAGFANLKWHINNV  389 (578)
T ss_pred             ccCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999996

>PRK13507 formate--tetrahydrofolate ligase; Provisional

Probab=100.00  E-value=2.6e-47  Score=327.53  Aligned_cols=99  Identities=38%  Similarity=0.590  Sum_probs=97.5

Q ss_pred             CCCcchhHHHHHHHHHhhcceecccCc--ccchhhhcccccccCCCCCCeEEEEeehHHHHhhCCCCCCCCCCCCCCccC
Q psy4802           4 QAKPCRESAEIVYALLILEGHLWPSKY--WLWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYT   81 (103)
Q Consensus         4 ~~~~c~~~~~~~~~l~~~~~~~~~~~~--dLGaEKF~dIKcR~sGl~PdavVLVaTvRALK~HGG~~~~~~G~pl~~~~~   81 (103)
                      .||||||++|++.||+++||+||||||  |||||||||||||.+|++|||+|||||+||||||||++..+||+|||++|.
T Consensus       297 IAHG~nSviAt~~ALkladyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~hgG~~~~~~g~~l~~~l~  376 (587)
T PRK13507        297 IAIGQSSIIADRVGLKLADYHVTESGFGADIGFEKFWNLKCRLSGLKPDCAVIVATIRALKMHGGGPKVVPGKPLPEEYT  376 (587)
T ss_pred             hhcccHHHHHHHHHHhcCCeEEeccccCCCCChhheeeeeccccCCCCCEEEEEeEhHHHHHcCCCCccccCCccchhcc
Confidence            489999999999999999999999999  999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHhHhhHHHhhccC
Q psy4802          82 EVSTSTEHQGCIKGRGQFSPI  102 (103)
Q Consensus        82 ~enl~al~kG~~NL~kHIeNi  102 (103)
                      +||+++|++||+||+|||+|+
T Consensus       377 ~enl~al~~G~~NL~~Hi~n~  397 (587)
T PRK13507        377 KENVGLVEKGCANLLHHIGTV  397 (587)
T ss_pred             ccCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999996

>PLN02759 Formate--tetrahydrofolate ligase

Probab=100.00  E-value=3.9e-46  Score=322.36  Aligned_cols=99  Identities=37%  Similarity=0.542  Sum_probs=97.5

Q ss_pred             CCCcchhHHHHHHHHHhh---cceecccCc--ccchhhhcccccccCCCCCCeEEEEeehHHHHhhCCCCCCCCCCCCCC
Q psy4802           4 QAKPCRESAEIVYALLIL---EGHLWPSKY--WLWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKP   78 (103)
Q Consensus         4 ~~~~c~~~~~~~~~l~~~---~~~~~~~~~--dLGaEKF~dIKcR~sGl~PdavVLVaTvRALK~HGG~~~~~~G~pl~~   78 (103)
                      .||||||++|++.||+++   ||+||||||  |||||||||||||.+|++||++|||||+||||||||++.++||+||++
T Consensus       343 IAhG~nSviAtk~ALkla~~~dyvVTEAGFGaDlGaEKF~dIkcR~~gl~P~a~VlVaTvRALK~hGG~~~~~pg~~l~~  422 (637)
T PLN02759        343 IAHGNSSIVADQIALKLVGPGGFVVTEAGFGADIGTEKFMNIKCRYSGLKPQCAVIVATVRALKMHGGGPAVVAGKPLDH  422 (637)
T ss_pred             ccccchHHHHHHHHHhhcCCCCeEEEecccCCCCchhheecccccccCCCCCEEEEEeehHHHHhcCCCCcccCCccchh
Confidence            589999999999999999   999999999  999999999999999999999999999999999999999999999999


Q ss_pred             ccCcCCHHHHHHhHhhHHHhhccC
Q psy4802          79 EYTEVSTSTEHQGCIKGRGQFSPI  102 (103)
Q Consensus        79 ~~~~enl~al~kG~~NL~kHIeNi  102 (103)
                      +|.+||+++|++||+||.|||+|+
T Consensus       423 ~l~~enl~al~~G~~NL~~Hi~n~  446 (637)
T PLN02759        423 AYTTENVELVEAGCVNLARHIENT  446 (637)
T ss_pred             hhcccCHHHHHhhhhhHHHHHHHH
Confidence            999999999999999999999996

>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6

Probab=100.00  E-value=1.3e-45  Score=316.03  Aligned_cols=91  Identities=40%  Similarity=0.518  Sum_probs=78.1

Q ss_pred             CCCcchhHHHHHHHHHhhcceecccCc--ccchhhhcccccccCCCCCCeEEEEeehHHHHhhCCCCCCCCCCCCCCccC
Q psy4802           4 QAKPCRESAEIVYALLILEGHLWPSKY--WLWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYT   81 (103)
Q Consensus         4 ~~~~c~~~~~~~~~l~~~~~~~~~~~~--dLGaEKF~dIKcR~sGl~PdavVLVaTvRALK~HGG~~~~~~G~pl~~~~~   81 (103)
                      .||||||++|++.||+++||+||||||  |||||||||||||++|++|||+|||||+||||||||+.        .++|.
T Consensus       275 IAhG~nSviAt~~al~l~dyvvTEAGFGaDlGaEKF~dIkcr~~gl~P~~~VlVaTvRALK~HGG~~--------~~~l~  346 (557)
T PF01268_consen  275 IAHGCNSVIATKMALKLADYVVTEAGFGADLGAEKFFDIKCRKSGLKPDAVVLVATVRALKMHGGVA--------KDDLN  346 (557)
T ss_dssp             SS--B--HHHHHHHHHHSSEEEEEBSSSTTTHHHHHHHTHHHHHT---SEEEEEEEHHHHHHHTT----------GGGTT
T ss_pred             ccccCchHHHHHHHHhhcceeecccccccccChhhhcCccchhcccCcceEEEeeechHHHhhcCCC--------ccccC
Confidence            589999999999999999999999999  99999999999999999999999999999999999997        68899


Q ss_pred             cCCHHHHHHhHhhHHHhhccC
Q psy4802          82 EVSTSTEHQGCIKGRGQFSPI  102 (103)
Q Consensus        82 ~enl~al~kG~~NL~kHIeNi  102 (103)
                      +||+++|++||+||+|||+|+
T Consensus       347 ~eNl~al~~G~~NL~rHIeNi  367 (557)
T PF01268_consen  347 EENLEALEKGFANLERHIENI  367 (557)
T ss_dssp             S--HHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999996

3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....

>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate

Probab=100.00  E-value=4.1e-45  Score=311.18  Aligned_cols=91  Identities=43%  Similarity=0.522  Sum_probs=88.0

Q ss_pred             CCCcchhHHHHHHHHHhhcceecccCc--ccchhhhcccccccCCCCCCeEEEEeehHHHHhhCCCCCCCCCCCCCCccC
Q psy4802           4 QAKPCRESAEIVYALLILEGHLWPSKY--WLWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYT   81 (103)
Q Consensus         4 ~~~~c~~~~~~~~~l~~~~~~~~~~~~--dLGaEKF~dIKcR~sGl~PdavVLVaTvRALK~HGG~~~~~~G~pl~~~~~   81 (103)
                      .||||||++||+.||+++||+||||||  |||||||||||||.+|++||++|||||+||||||||++        ++++.
T Consensus       259 IAhGcnSviAtk~al~laDyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~hGG~~--------~~~l~  330 (524)
T cd00477         259 IAHGCNSIIADKIALKLADYVVTEAGFGADLGAEKFFNIKCRYSGLKPDAVVLVATVRALKMHGGVP--------KVTLG  330 (524)
T ss_pred             ccccchHHHHHHHHHhhcCeEEeeccccCCCCCceeeeeeeccCCCCCCEEEEEEehHHHHHhCCCC--------cccCC
Confidence            589999999999999999999999999  99999999999999999999999999999999999998        56777


Q ss_pred             -cCCHHHHHHhHhhHHHhhccC
Q psy4802          82 -EVSTSTEHQGCIKGRGQFSPI  102 (103)
Q Consensus        82 -~enl~al~kG~~NL~kHIeNi  102 (103)
                       +||+++|++||+||+|||+|+
T Consensus       331 ~~en~~al~~G~~NL~~Hi~n~  352 (524)
T cd00477         331 LEENLEALEKGFANLRKHIENI  352 (524)
T ss_pred             CccCHHHHHhHHHHHHHHHHHH
Confidence             999999999999999999996

FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.

>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]

Probab=100.00  E-value=2.5e-44  Score=305.76  Aligned_cols=91  Identities=42%  Similarity=0.549  Sum_probs=89.3

Q ss_pred             CCCcchhHHHHHHHHHhhcceecccCc--ccchhhhcccccccCCCCCCeEEEEeehHHHHhhCCCCCCCCCCCCCCccC
Q psy4802           4 QAKPCRESAEIVYALLILEGHLWPSKY--WLWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYT   81 (103)
Q Consensus         4 ~~~~c~~~~~~~~~l~~~~~~~~~~~~--dLGaEKF~dIKcR~sGl~PdavVLVaTvRALK~HGG~~~~~~G~pl~~~~~   81 (103)
                      .||||||++|++.||+++||+||||||  |||+|||||||||.+|++|||||||||+||||||||++        ++++.
T Consensus       273 IAhGcnSiiAt~~AlkL~dy~VTEAGFgaDlGaEKF~dIK~r~~gl~PdavVlVATvRALK~hGG~~--------~~~l~  344 (554)
T COG2759         273 IAHGCNSIIATKTALKLADYVVTEAGFGADLGAEKFFDIKCRSSGLKPDAVVLVATVRALKMHGGVP--------KEDLT  344 (554)
T ss_pred             hhccchhHHHHHHHHhhcCeEEEecccccccchhhhcceeccccCCCCCeEEEeeehHHHHHcCCCC--------hHHhc
Confidence            489999999999999999999999999  99999999999999999999999999999999999999        79999


Q ss_pred             cCCHHHHHHhHhhHHHhhccC
Q psy4802          82 EVSTSTEHQGCIKGRGQFSPI  102 (103)
Q Consensus        82 ~enl~al~kG~~NL~kHIeNi  102 (103)
                      +||+|+|++||+||.|||+|+
T Consensus       345 ~Env~avk~G~aNL~~Hi~Ni  365 (554)
T COG2759         345 EENVDAVKKGFANLLKHIENI  365 (554)
T ss_pred             chhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999996

>PRK13505 formate--tetrahydrofolate ligase; Provisional

Probab=100.00  E-value=3.5e-44  Score=307.16  Aligned_cols=91  Identities=36%  Similarity=0.488  Sum_probs=88.8

Q ss_pred             CCCcchhHHHHHHHHHhhcceecccCc--ccchhhhcccccccCCCCCCeEEEEeehHHHHhhCCCCCCCCCCCCCCccC
Q psy4802           4 QAKPCRESAEIVYALLILEGHLWPSKY--WLWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYT   81 (103)
Q Consensus         4 ~~~~c~~~~~~~~~l~~~~~~~~~~~~--dLGaEKF~dIKcR~sGl~PdavVLVaTvRALK~HGG~~~~~~G~pl~~~~~   81 (103)
                      .||||||++||+.||+++||+||||||  |||||||||||||.+|++||++|||||+||||||||++        .++|.
T Consensus       276 IAhG~nSviAt~~al~ladyvvTEaGFGaDlGaEKF~dIkcr~~gl~P~~~VlVaTvraLK~hgg~~--------~~~l~  347 (557)
T PRK13505        276 IAHGCNSVLATKTALKLADYVVTEAGFGADLGAEKFLDIKCRKAGLKPDAVVIVATVRALKMHGGVA--------KDDLK  347 (557)
T ss_pred             hhcccHHHHHHHHHHhhCCEEEecccccCCCCCceeeeeecccCCCCCCEEEEEeehHHHHHcCCCC--------hhhcc
Confidence            489999999999999999999999999  99999999999999999999999999999999999998        68999


Q ss_pred             cCCHHHHHHhHhhHHHhhccC
Q psy4802          82 EVSTSTEHQGCIKGRGQFSPI  102 (103)
Q Consensus        82 ~enl~al~kG~~NL~kHIeNi  102 (103)
                      +||+|++++||.||+|||+|+
T Consensus       348 ~en~Eal~sGl~NL~RHIenv  368 (557)
T PRK13505        348 EENVEALKKGFANLERHIENI  368 (557)
T ss_pred             ccCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999986

>PTZ00386 formyl tetrahydrofolate synthetase; Provisional

Probab=100.00  E-value=4.1e-43  Score=303.11  Aligned_cols=91  Identities=36%  Similarity=0.376  Sum_probs=87.7

Q ss_pred             CCCcchhHHHHHHHHHhh---cceecccCc--ccchhhhcccccccCCCCCCeEEEEeehHHHHhhCCCCCCCCCCCCCC
Q psy4802           4 QAKPCRESAEIVYALLIL---EGHLWPSKY--WLWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKP   78 (103)
Q Consensus         4 ~~~~c~~~~~~~~~l~~~---~~~~~~~~~--dLGaEKF~dIKcR~sGl~PdavVLVaTvRALK~HGG~~~~~~G~pl~~   78 (103)
                      .||||||++|++.||+++   ||+||||||  |||||||||||||.||++|||+|||||+||||||||++        +.
T Consensus       338 IAhG~nSviAt~~ALkla~~~dyvVTEAGFGaDlGaEKF~dIkcR~sgl~P~a~VlVaTvRALK~hGG~~--------~~  409 (625)
T PTZ00386        338 IAHGNSSIVADQIALKLAGQDGFVLTEAGFGADIGCEKFFNIKCRTSGLKPDAAVLVATVRALKFHGGVE--------PV  409 (625)
T ss_pred             hhcccHHHHHHHHHHHhCCCCCeEEEeccccCCCCchhhccccccccCCCcCEEEEEeehHHHHHhCCCC--------cc
Confidence            489999999999999999   899999999  99999999999999999999999999999999999998        56


Q ss_pred             ccCcCCHHHHHHhHhhHHHhhccC
Q psy4802          79 EYTEVSTSTEHQGCIKGRGQFSPI  102 (103)
Q Consensus        79 ~~~~enl~al~kG~~NL~kHIeNi  102 (103)
                      ++.+||+++|++||+||.|||+|+
T Consensus       410 ~l~~enl~al~~G~~NL~~Hien~  433 (625)
T PTZ00386        410 VAGKENLEAVRKGLSNLQRHIQNI  433 (625)
T ss_pred             ccCccCHHHHHHHHHHHHHHHHHH
Confidence            777899999999999999999996

>KOG4230|consensus

Probab=100.00  E-value=5.1e-38  Score=274.80  Aligned_cols=98  Identities=45%  Similarity=0.626  Sum_probs=95.2

Q ss_pred             CCcchhHHHHHHHHHhhc---------ceecccCc--ccchhhhcccccccCCCCCCeEEEEeehHHHHhhCCCCCCCCC
Q psy4802           5 AKPCRESAEIVYALLILE---------GHLWPSKY--WLWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSG   73 (103)
Q Consensus         5 ~~~c~~~~~~~~~l~~~~---------~~~~~~~~--dLGaEKF~dIKcR~sGl~PdavVLVaTvRALK~HGG~~~~~~G   73 (103)
                      ++|-.|+||-..||++.-         |+||||||  |+|+|||||||||+|||.||+|||||||||||+|||+|.++||
T Consensus       638 sigassiiadrialklvgte~~~keagyvvteagf~~dmgmekffnikcr~sgl~p~avvlvatvralk~hgggp~v~pg  717 (935)
T KOG4230|consen  638 SIGASSIIADRIALKLVGTESRPKEAGYVVTEAGFASDMGMEKFFNIKCRYSGLVPNAVVLVATVRALKLHGGGPKVKPG  717 (935)
T ss_pred             ccchHHHHHHHHHHHhcCCCCCcccCceEEEecccccccchhheeeeeeecCCCCCceEEEeehhHHHHhcCCCCCCCCC
Confidence            578899999999999964         99999999  9999999999999999999999999999999999999999999


Q ss_pred             CCCCCccCcCCHHHHHHhHhhHHHhhccC
Q psy4802          74 QPLKPEYTEVSTSTEHQGCIKGRGQFSPI  102 (103)
Q Consensus        74 ~pl~~~~~~enl~al~kG~~NL~kHIeNi  102 (103)
                      +|||++|++||+|.+++||+||.|||+|+
T Consensus       718 ~plp~~y~~en~dlv~kg~snl~k~i~n~  746 (935)
T KOG4230|consen  718 QPLPEEYTEENLDLVEKGCSNLVKQIENI  746 (935)
T ss_pred             CCCcHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence            99999999999999999999999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	103
1eg7_A	557	The Crystal Structure Of Formyltetrahydrofolate Syn		8e-09
1fpm_A	557	Monovalent Cation Binding Sites In N10-formyltetrah		8e-09
3do6_A	543	Crystal Structure Of Putative Formyltetrahydrofolat		1e-04

>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase From Moorella Thermoacetica Length = 557

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/37 (64%), Positives = 29/37 (78%)
Query: 32  LWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGP 68
           L  EKF+++KCR +G  PDA V+V TVRALKMHGG P
Sbjct: 308 LGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVP 344

>pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In N10-formyltetrahydrofolate Synthetase From Moorella Thermoacetica Length = 557

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/37 (64%), Positives = 29/37 (78%)
Query: 32  LWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGP 68
           L  EKF+++KCR +G  PDA V+V TVRALKMHGG P
Sbjct: 308 LGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVP 344

>pdb|3DO6|A Chain A, Crystal Structure Of Putative Formyltetrahydrofolate Synthetase (Tm1766) From Thermotoga Maritima At 1.85 A Resolution Length = 543

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 22/36 (61%)
Query: 32  LWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGG 67
           L  EKF +   R  G  P+A VLV TVRALK HGG 
Sbjct: 294 LGAEKFIDFVSRVGGFYPNAAVLVATVRALKYHGGA 329

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	103
3pzx_A	557	Formate--tetrahydrofolate ligase; HET: TOE; 2.20A	7e-19
3do6_A	543	Formate--tetrahydrofolate ligase; TM1766, putative	1e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} Length = 543

 Score = 78.0 bits (193), Expect = 1e-18
 Identities = 20/37 (54%), Positives = 22/37 (59%)

Query: 32  LWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGP 68
           L  EKF +   R  G  P+A VLV TVRALK HGG  
Sbjct: 294 LGAEKFIDFVSRVGGFYPNAAVLVATVRALKYHGGAN 330

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-07
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 19/70 (27%)

Query: 17  ALLILEGHLWPSKYWLWMEKFFNIKCRTSGKIPDAVVLVTTVR----ALKMHGGGPSVVS 72
            LL+L  ++  +K W      FN+ C+          L+TT R       +     + +S
Sbjct: 246 CLLVLL-NVQNAKAW----NAFNLSCKI---------LLTT-RFKQVTDFLSAATTTHIS 290

Query: 73  GQPLKPEYTE 82
                   T 
Sbjct: 291 LDHHSMTLTP 300

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	103
3do6_A	543	Formate--tetrahydrofolate ligase; TM1766, putative	100.0
3pzx_A	557	Formate--tetrahydrofolate ligase; HET: TOE; 2.20A	100.0

>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0

Probab=100.00  E-value=1.5e-46  Score=319.41  Aligned_cols=91  Identities=29%  Similarity=0.312  Sum_probs=89.1

Q ss_pred             CCCcchhHHHHHHHHHhhcceecccCc--ccchhhhcccccccCCCCCCeEEEEeehHHHHhhCCCCCCCCCCCCCCccC
Q psy4802           4 QAKPCRESAEIVYALLILEGHLWPSKY--WLWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYT   81 (103)
Q Consensus         4 ~~~~c~~~~~~~~~l~~~~~~~~~~~~--dLGaEKF~dIKcR~sGl~PdavVLVaTvRALK~HGG~~~~~~G~pl~~~~~   81 (103)
                      .||||||++||+.||+++||+||||||  |||||||||||||++||+|||||||||+||||||||++        +++|.
T Consensus       264 IAHGcnSviAtk~ALklaDyvVTEAGFGADlGaEKF~dIKCR~~gl~P~avVlVATvRALK~hGG~~--------~~~l~  335 (543)
T 3do6_A          264 IAHGTNSIIATKMAMKLSEYTVTEAGFGADLGAEKFIDFVSRVGGFYPNAAVLVATVRALKYHGGAN--------LKNIH  335 (543)
T ss_dssp             SSCCBCCHHHHHHHHHHCSEEEEEBSSSTTTHHHHHHHTHHHHHTCCCSEEEEEECHHHHHHHTTCC--------GGGTT
T ss_pred             ccccchHHHHHHHHHhccCeEEEecccccccchHhhcCccccccCCCCCEEEEEeehHHHHhcCCCC--------hhhcC
Confidence            589999999999999999999999999  99999999999999999999999999999999999999        69999


Q ss_pred             cCCHHHHHHhHhhHHHhhccC
Q psy4802          82 EVSTSTEHQGCIKGRGQFSPI  102 (103)
Q Consensus        82 ~enl~al~kG~~NL~kHIeNi  102 (103)
                      +||+++|++||+||+|||+|+
T Consensus       336 ~enl~al~~G~~NL~kHIen~  356 (543)
T 3do6_A          336 EENLEALKEGFKNLRVHVENL  356 (543)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	103
d1eg7a_	549	c.37.1.10 (A:) Formyltetrahydrofolate synthetase {	3e-12

>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]} Length = 549

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

 Score = 59.1 bits (143), Expect = 3e-12
 Identities = 23/35 (65%), Positives = 28/35 (80%)

Query: 34  MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGP 68
            EKF+++KCR +G  PDA V+V TVRALKMHGG P
Sbjct: 304 AEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVP 338

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	103
d1eg7a_	549	Formyltetrahydrofolate synthetase {Moorella thermo	100.0

>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

Probab=100.00  E-value=2.9e-45  Score=310.19  Aligned_cols=91  Identities=34%  Similarity=0.485  Sum_probs=89.1

Q ss_pred             CCCcchhHHHHHHHHHhhcceecccCc--ccchhhhcccccccCCCCCCeEEEEeehHHHHhhCCCCCCCCCCCCCCccC
Q psy4802           4 QAKPCRESAEIVYALLILEGHLWPSKY--WLWMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYT   81 (103)
Q Consensus         4 ~~~~c~~~~~~~~~l~~~~~~~~~~~~--dLGaEKF~dIKcR~sGl~PdavVLVaTvRALK~HGG~~~~~~G~pl~~~~~   81 (103)
                      .||||||++|++.||+++||+||||||  |||||||||||||++|++|||+|||||+||||||||++        ++++.
T Consensus       272 IAhG~nSviAt~~al~ladyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~~~VlVaTvRALK~HGG~~--------~~~l~  343 (549)
T d1eg7a_         272 IAHGCNSIIATKTALKLADYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVP--------KSDLA  343 (549)
T ss_dssp             SSCCBCCHHHHHHHHHHCSEEEEEBSSCTTTHHHHHHHTHHHHHTCCCCEEEEEECHHHHHHTTTCC--------GGGTT
T ss_pred             cccccchHHHHHHHhhcCCeEEEeccccCCccchhhhccccccCCCCCceEEEEeehhhhhhcCCCC--------hHHcC
Confidence            589999999999999999999999999  99999999999999999999999999999999999998        68999


Q ss_pred             cCCHHHHHHhHhhHHHhhccC
Q psy4802          82 EVSTSTEHQGCIKGRGQFSPI  102 (103)
Q Consensus        82 ~enl~al~kG~~NL~kHIeNi  102 (103)
                      +||+++|++||+||+|||+|+
T Consensus       344 ~eNl~Al~~G~~NL~rHIeNi  364 (549)
T d1eg7a_         344 TENLEALREGFANLEKHIENI  364 (549)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999996