Psyllid ID: psy4808

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MAQAVELDTDTRGETSNALDVTASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLECKAAELCQCTDSIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHcccccccccEEEEEEEccccHHHHHHHHHHHHHHHcccEEEEEEcccccccEEEEEEEEccccccccccEEcccccHHHHHHHHHHccccccEEEccccccHHHccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccccccEcccccEEEEEEEcccccccccHHHHHHHccHHHcccccEEEEEEEEccEHHHHHHHHHHHHHHHcccEEEEEEcccccccEEEEEEcccccccccccHHHEccccHHHHHHHHHHccccccEEEEccccEEEEEcc
Coil and Loop (DISEMBL)
maqaveldtdtrgetsnaldvTASFKVLITgfgpfkthtinpsweavsllpdripntniEIVKEQIQVSYNYVDVtvpalwkkynpdlvihvGVSDMADKITLECKAAELCQCTDSIDVIKTALDVESLVKEFQTNkaninqvldidisrvdvcnr
Flexible Loop (DISEMBL)
maqaveldtdtrgetsnaldvTASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLECKAAELCQCTDSIDVIKTALDVESLVKEFqtnkaninqvldidisrvdvcnr
Low Complexity Region (SEG)
MAQAVELDTDTRGETSNALDVTASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLECKAAELCQCTDSIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR
Disordered region (IsUnstruct)
******************LDVTASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLECKAAELCQCTDSIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVC**
Disordered Region (DISOPRED)
**************************VLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLECKAAELCQCTDSIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVC**
Disordered Region (DISEMBL)
*************ETSNALDVTASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLECKAAELCQCTDSIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR
Disordered Region (DISPRO)
***********RGETSNALDVTASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLECKAAELCQCTDSIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQAVELDTDTRGETSNALDVTASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLECKAAELCQCTDSIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	156	2.2.26 [Sep-21-2011]
Q9ESW8	209	Pyroglutamyl-peptidase 1	yes	N/A	0.794	0.593	0.338	5e-16
Q9NXJ5	209	Pyroglutamyl-peptidase 1	yes	N/A	0.794	0.593	0.338	7e-16
Q76IC5	209	Pyroglutamyl-peptidase 1	yes	N/A	0.794	0.593	0.330	2e-15
B6YUJ5	200	Pyrrolidone-carboxylate p	yes	N/A	0.5	0.39	0.462	2e-11
Q5JEL5	206	Pyrrolidone-carboxylate p	yes	N/A	0.493	0.373	0.443	1e-09
A6LL24	202	Pyrrolidone-carboxylate p	yes	N/A	0.493	0.381	0.405	4e-09
B7IEE2	205	Pyrrolidone-carboxylate p	yes	N/A	0.5	0.380	0.412	2e-07
Q040L6	215	Pyrrolidone-carboxylate p	yes	N/A	0.5	0.362	0.4	3e-07
Q65FR5	215	Pyrrolidone-carboxylate p	yes	N/A	0.5	0.362	0.379	5e-07
A7Z119	215	Pyrrolidone-carboxylate p	yes	N/A	0.551	0.4	0.415	6e-07

>sp|Q9ESW8|PGPI_MOUSE Pyroglutamyl-peptidase 1 OS=Mus musculus GN=Pgpep1 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 73/139 (52%), Gaps = 15/139 (10%)

Query: 27  VLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNP 86
           V++TGFGPF  HT+N SW AV  L       ++++   +I V Y  V   +PALW+K++P
Sbjct: 8   VVVTGFGPFGEHTVNASWIAVQELEKLGLGDSVDLHVYEIPVEYQTVQRLIPALWEKHSP 67

Query: 87  DLVIHVGVSDMADKITLE-------------CKAAELCQCT--DSIDVIKTALDVESLVK 131
            LV+HVGVS MA  +TLE             C+     QC   D  + I + +D++++ K
Sbjct: 68  QLVVHVGVSGMATTVTLEKCGHNKGYKGLDNCRFCPGSQCCVEDGPESIDSIIDMDAVCK 127

Query: 132 EFQTNKANINQVLDIDISR 150
              T   +++  +  D  R
Sbjct: 128 RVTTLGLDVSVTISQDAGR 146

Removes 5-oxoproline from various penultimate amino acid residues except L-proline.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 3

>sp|Q9NXJ5|PGPI_HUMAN Pyroglutamyl-peptidase 1 OS=Homo sapiens GN=PGPEP1 PE=1 SV=1

 Score = 82.8 bits (203), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 73/139 (52%), Gaps = 15/139 (10%)

Query: 27  VLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNP 86
           V++TGFGPF  HT+N SW AV  L       ++++   +I V Y  V   +PALW+K++P
Sbjct: 8   VVVTGFGPFGEHTVNASWIAVQELEKLGLGDSVDLHVYEIPVEYQTVQRLIPALWEKHSP 67

Query: 87  DLVIHVGVSDMADKITLE-------------CKAAELCQCT--DSIDVIKTALDVESLVK 131
            LV+HVGVS MA  +TLE             C+     QC   D  + I + +D++++ K
Sbjct: 68  QLVVHVGVSGMATTVTLEKCGHNKGYKGLDNCRFCPGSQCCVEDGPESIDSIIDMDAVCK 127

Query: 132 EFQTNKANINQVLDIDISR 150
              T   +++  +  D  R
Sbjct: 128 RVTTLGLDVSVTISQDAGR 146

Removes 5-oxoproline from various penultimate amino acid residues except L-proline.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 3

>sp|Q76IC5|PGPI_RAT Pyroglutamyl-peptidase 1 OS=Rattus norvegicus GN=Pgpep1 PE=1 SV=1

 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 15/139 (10%)

Query: 27  VLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNP 86
           V++TGFGPF  H +N SW AV  L       ++++   +I V Y  V   +PALW+K++P
Sbjct: 8   VVVTGFGPFGEHAVNASWIAVQELEKLGLGDSVDLHVYEIPVEYQTVQRLIPALWEKHSP 67

Query: 87  DLVIHVGVSDMADKITLE-------------CKAAELCQCT--DSIDVIKTALDVESLVK 131
            LV+HVGVS MA  +TLE             C+     QC   D  + I + +D++++ K
Sbjct: 68  QLVVHVGVSGMATTVTLEKCGHNKGYKGLDNCRFCPGSQCCVEDGPESIDSIIDMDAVCK 127

Query: 132 EFQTNKANINQVLDIDISR 150
              T   +++  +  D  R
Sbjct: 128 RVTTLGLDVSVTISQDAGR 146

Removes 5-oxoproline from various penultimate amino acid residues except L-proline.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 3

>sp|B6YUJ5|PCP_THEON Pyrrolidone-carboxylate peptidase OS=Thermococcus onnurineus (strain NA1) GN=pcp PE=3 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 25  FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKY 84
            KVLITGF PF    INPSWEAV  LPD I     E++K Q+ V++  V   +P L  + 
Sbjct: 1   MKVLITGFEPFGGEEINPSWEAVRRLPDEI--AGAELIKRQLPVTFRGVRELLPRLIVET 58

Query: 85  NPDLVIHVGVSDMADKITLE 104
            PDLVI  G +     IT+E
Sbjct: 59  KPDLVILTGQAGGRPNITVE 78

Removes 5-oxoproline from various penultimate amino acid residues except L-proline.

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 3

>sp|Q5JEL5|PCP_PYRKO Pyrrolidone-carboxylate peptidase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=pcp PE=3 SV=1

 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 2/79 (2%)

Query: 26  KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
           KVL+TGF PF    INPSWEAV  LP+ I     +I+K Q+ V+++ V   +P L  K  
Sbjct: 2   KVLVTGFEPFGGEEINPSWEAVKGLPNEI--EGADIIKFQLPVTFSGVREILPRLIVKER 59

Query: 86  PDLVIHVGVSDMADKITLE 104
           PD VI  G +     IT+E
Sbjct: 60  PDAVILTGQAGGRPNITVE 78

Removes 5-oxoproline from various penultimate amino acid residues except L-proline.

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 3

>sp|A6LL24|PCP_THEM4 Pyrrolidone-carboxylate peptidase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=pcp PE=3 SV=1

 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 26  KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
           KVL+TGF PF   TINPS+EA+ +LPD +     +I+K ++   +      +  L  K N
Sbjct: 2   KVLVTGFEPFNGETINPSFEAIKMLPDEVEGA--KIIKAKLPTVFRKSLCELEELISKEN 59

Query: 86  PDLVIHVGVSDMADKITLE 104
           PD+VI VG +    KI++E
Sbjct: 60  PDIVICVGQAAGRSKISIE 78

Removes 5-oxoproline from various penultimate amino acid residues except L-proline.

Thermosipho melanesiensis (strain BI429 / DSM 12029) (taxid: 391009)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 3

>sp|B7IEE2|PCP_THEAB Pyrrolidone-carboxylate peptidase OS=Thermosipho africanus (strain TCF52B) GN=pcp PE=3 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 25  FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKY 84
            K+LITGF PF    +NPS+EAV  LPD I     +IVK  I   +      +  L  K 
Sbjct: 1   MKILITGFEPFGGEVVNPSFEAVKHLPDSIEKA--QIVKAAIHTVFRKSIEVLEELIVKE 58

Query: 85  NPDLVIHVGVSDMADKITLE 104
            PD+VI VG +    +IT+E
Sbjct: 59  KPDIVICVGQAGGRAEITIE 78

Removes 5-oxoproline from various penultimate amino acid residues except L-proline.

Thermosipho africanus (strain TCF52B) (taxid: 484019)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 3

>sp|Q040L6|PCP_LACGA Pyrrolidone-carboxylate peptidase OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=pcp PE=3 SV=1

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 25  FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKY 84
            K+L+TGF PF    INP+ EAV  LPD I     EI+K +I   +N     V    +K 
Sbjct: 1   MKILVTGFDPFGGDKINPAIEAVKRLPDEI--NGAEIIKLEIPTVFNKSAEVVKEAIEKE 58

Query: 85  NPDLVIHVGVSDMADKITLE 104
           NPD V++VG +     +T E
Sbjct: 59  NPDYVLNVGQAGGRFGLTPE 78

Removes 5-oxoproline from various penultimate amino acid residues except L-proline.

Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) (taxid: 324831)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 3

>sp|Q65FR5|PCP_BACLD Pyrrolidone-carboxylate peptidase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=pcp PE=3 SV=1

 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 26  KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
           KVL+TGF PF   T+NPSWEAV  L +      + I  EQI   +++    +    +K+ 
Sbjct: 4   KVLLTGFDPFGGETVNPSWEAVKRL-NGEEAEGVSIAAEQIPTVFHHSAAVLKKAIEKHK 62

Query: 86  PDLVIHVGVSDMADKITLE 104
           PD+VI  G +     IT E
Sbjct: 63  PDVVICAGQAGGRAHITPE 81

Removes 5-oxoproline from various penultimate amino acid residues except L-proline.

Bacillus licheniformis (strain DSM 13 / ATCC 14580) (taxid: 279010)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 3

>sp|A7Z119|PCP_BACA2 Pyrrolidone-carboxylate peptidase OS=Bacillus amyloliquefaciens (strain FZB42) GN=pcp PE=3 SV=1

 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 26  KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQ-VSYNYVDVTVPALWKKY 84
           KVL+TGF PF   T+NPSWEAV  L +        IV EQ+  V Y  + V   A+ KK+
Sbjct: 4   KVLLTGFDPFGGETVNPSWEAVKRL-NGAAEGPASIVSEQVPTVFYKSLAVLREAI-KKH 61

Query: 85  NPDLVIHVGVSDMADKITLECKAAELCQC 113
            PD++I VG +    +IT E  A  L + 
Sbjct: 62  QPDIIICVGQAGGRMQITPERVAINLNEA 90

Removes 5-oxoproline from various penultimate amino acid residues except L-proline.

Bacillus amyloliquefaciens (strain FZB42) (taxid: 326423)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
270009598	332	hypothetical protein TcasGA2_TC008878 [T	0.506	0.237	0.543	2e-18
332031137	1043	Pyroglutamyl-peptidase 1 [Acromyrmex ech	0.756	0.113	0.395	2e-18
322786181	202	hypothetical protein SINV_06582 [Solenop	0.519	0.400	0.529	7e-18
443717556	203	hypothetical protein CAPTEDRAFT_162094 [	0.858	0.660	0.333	8e-18
307190404	202	Pyroglutamyl-peptidase 1 [Camponotus flo	0.570	0.440	0.462	8e-17
156549613	202	PREDICTED: pyroglutamyl-peptidase 1-like	0.519	0.400	0.476	3e-16
432854580	214	PREDICTED: pyroglutamyl-peptidase 1-like	0.788	0.574	0.340	2e-15
348523237	210	PREDICTED: pyroglutamyl-peptidase 1-like	0.788	0.585	0.342	3e-15
340374228	225	PREDICTED: pyroglutamyl-peptidase 1-like	0.711	0.493	0.406	1e-14
405976772	203	Pyroglutamyl-peptidase 1 [Crassostrea gi	0.506	0.389	0.493	2e-14

>gi|270009598|gb|EFA06046.1| hypothetical protein TcasGA2_TC008878 [Tribolium castaneum]

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 57/81 (70%), Gaps = 2/81 (2%)

Query: 24  SFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKK 83
           S  +++TGFGPF  H +N SWE+V LLP  +    I  +KE+I V+Y  VD  +  +WK+
Sbjct: 3   SGNIIVTGFGPFGDHAVNASWESVKLLPQEVDGYTI--IKEEISVAYETVDKKIHLMWKE 60

Query: 84  YNPDLVIHVGVSDMADKITLE 104
           YNP LVIHVGVS +ADKITLE
Sbjct: 61  YNPALVIHVGVSALADKITLE 81

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332031137|gb|EGI70714.1| Pyroglutamyl-peptidase 1 [Acromyrmex echinatior]

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 76/134 (56%), Gaps = 16/134 (11%)

Query: 19  LDVTASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNT----NIEIVKEQIQVSYNYVD 74
           +DV A   +L+TGFGPF  HT+N SWEAV  L +   N+    +++++ E+I VSY+YV 
Sbjct: 1   MDVNAKCTILVTGFGPFSIHTVNASWEAVKELQELWKNSVEFSDVKLITEKIPVSYDYVS 60

Query: 75  VTVPALWKKYNPDLVIHVGVSDMADKITLECKAAE--------LCQCTDSID----VIKT 122
             +P LWKK+NP +V+HVGVS  A  +T+E  A            +C +  D    V+KT
Sbjct: 61  DHIPQLWKKHNPSIVLHVGVSREAKSLTIEQHAYSNGYNKFDIYNKCPNETDVECKVLKT 120

Query: 123 ALDVESLVKEFQTN 136
            +DV  L      N
Sbjct: 121 EIDVRELCNNVNEN 134

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322786181|gb|EFZ12786.1| hypothetical protein SINV_06582 [Solenopsis invicta]

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 60/85 (70%), Gaps = 4/85 (4%)

Query: 27  VLITGFGPFKTHTINPSWEAVSLLPDRIPNT----NIEIVKEQIQVSYNYVDVTVPALWK 82
           +L+TGFGPF TH +N SWEAV  L +   N+    ++++V E+I VSY+YV   VP LWK
Sbjct: 9   ILVTGFGPFSTHVVNASWEAVKELQELWTNSVEFADVKLVAEEIPVSYDYVANHVPRLWK 68

Query: 83  KYNPDLVIHVGVSDMADKITLECKA 107
           KYNP +V+HVGVS  AD +T+E  A
Sbjct: 69  KYNPAIVLHVGVSHQADSLTIEHHA 93

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443717556|gb|ELU08570.1| hypothetical protein CAPTEDRAFT_162094 [Capitella teleta]

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 83/153 (54%), Gaps = 19/153 (12%)

Query: 13  GETSNALDVTASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNY 72
           G+ S A   T    VL+TGFGPF +H++N SW AV  L     + ++ ++ E++ V YN+
Sbjct: 2   GDNSEAPKTT----VLLTGFGPFGSHSVNASWVAVEQLSKEGVSEDVNLIVEEVPVLYNH 57

Query: 73  VDVTVPALWKKYNPDLVIHVGVSDMADKITLECKA---------------AELCQCTDSI 117
           V  ++PALW+K+ P LV+HVGVS +A  +TLE +A                + C   +S 
Sbjct: 58  VRESIPALWQKHKPKLVVHVGVSSIAQALTLEQQAHNDGYNKFDVKGDCPPDGCCVQNSA 117

Query: 118 DVIKTALDVESLVKEFQTNKANINQVLDIDISR 150
             I +A+D+  + +E    +  +  V+ +D  R
Sbjct: 118 SCIASAIDMRKVCEEVNAAECGVQAVISMDPGR 150

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|307190404|gb|EFN74463.1| Pyroglutamyl-peptidase 1 [Camponotus floridanus]

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/93 (46%), Positives = 62/93 (66%), Gaps = 4/93 (4%)

Query: 19  LDVTASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNT----NIEIVKEQIQVSYNYVD 74
           +DV +   +L+TGFGPF  + +N SWEAV  L     N+    +IE+V E+I VSY+YV 
Sbjct: 1   MDVDSECTILVTGFGPFDKYVVNASWEAVKELQKLWINSKEFLDIELVIEEIPVSYSYVS 60

Query: 75  VTVPALWKKYNPDLVIHVGVSDMADKITLECKA 107
             +P LWKK+NP +V+HVGV+  A+ + +EC A
Sbjct: 61  TQIPQLWKKHNPTIVLHVGVAGTAESLIIECHA 93

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156549613|ref|XP_001603784.1| PREDICTED: pyroglutamyl-peptidase 1-like [Nasonia vitripennis]

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 60/84 (71%), Gaps = 3/84 (3%)

Query: 27  VLITGFGPFKTHTINPSWEAVSLLP---DRIPNTNIEIVKEQIQVSYNYVDVTVPALWKK 83
           VL+TGFGPF  + +NPSWEAV LLP   D    ++I+++ E+I V+Y  V   V  LW+K
Sbjct: 9   VLVTGFGPFGNYKVNPSWEAVKLLPKLFDESEKSDIKLIIEEIAVAYESVSSKVKELWQK 68

Query: 84  YNPDLVIHVGVSDMADKITLECKA 107
           + P +++HVGVS +A+ +T+EC+A
Sbjct: 69  HRPSIIVHVGVSYVANCLTIECQA 92

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432854580|ref|XP_004067971.1| PREDICTED: pyroglutamyl-peptidase 1-like [Oryzias latipes]

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 21/144 (14%)

Query: 27  VLITGFGPFKTHTINPSWEAVSLLPDRIP----NTNIEIVKEQIQVSYNYVDVTVPALWK 82
           V++TGFGPF  HTINPSW AV      +      +N+++   ++ V Y  V   VP+LWK
Sbjct: 8   VVVTGFGPFGKHTINPSWVAVQEFFQELKKLGLGSNVDLHVYEVPVEYQTVQSLVPSLWK 67

Query: 83  KYNPDLVIHVGVSDMADKITLE----------------CKAAELCQCTDSIDVIKTALDV 126
           +Y+P LV+HVGVS MA  +TLE                C  ++ C      D I + +D+
Sbjct: 68  QYHPQLVVHVGVSGMATTVTLEKCGRNHGYKGLDNSSFCPDSQCC-IVGGPDCINSVIDM 126

Query: 127 ESLVKEFQTNKANINQVLDIDISR 150
           ES+ K    +   +   +  D  R
Sbjct: 127 ESVCKRVTASGLGVAVSVSKDAGR 150

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348523237|ref|XP_003449130.1| PREDICTED: pyroglutamyl-peptidase 1-like [Oreochromis niloticus]

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 71/140 (50%), Gaps = 17/140 (12%)

Query: 27  VLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNP 86
           V++TGFGPF  HT+N SW AV  L      T++++   ++ V Y  V   VP+LWK+Y+P
Sbjct: 8   VVVTGFGPFGEHTVNASWVAVQELKKLGLGTDVDLHVHEVPVEYQQVQSLVPSLWKQYHP 67

Query: 87  DLVIHVGVSDMADKITLE----------------CKAAELCQCTDSIDVIKTALDVESLV 130
            LV+HVGVS MA  +TLE                C  ++ C      D I + +D+ES+ 
Sbjct: 68  LLVVHVGVSGMATTVTLEKCGRNHGYKGLDNSSFCPDSQCC-VVGGPDCINSIIDMESVC 126

Query: 131 KEFQTNKANINQVLDIDISR 150
           K    +   +   +  D  R
Sbjct: 127 KRVNASGLGVAVSVSRDAGR 146

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|340374228|ref|XP_003385640.1| PREDICTED: pyroglutamyl-peptidase 1-like [Amphimedon queenslandica]

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/128 (40%), Positives = 66/128 (51%), Gaps = 17/128 (13%)

Query: 22  TASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTN---IEIVKEQIQVSYNYVDVTVP 78
           T    VL+TGFGPF +H +N SWEAV LLP      N   + +   +I+VSY  V   VP
Sbjct: 15  TKPLTVLVTGFGPFGSHKVNSSWEAVKLLPSMGLTANGRELRVETREIRVSYELVRDRVP 74

Query: 79  ALWKKYNPDLVIHVGVSDMADKITLEC--KAAELCQCTD------------SIDVIKTAL 124
           ALW + NPDL IHVGVS        +C        Q  D            S DV+KT+L
Sbjct: 75  ALWDEINPDLCIHVGVSPYKSIKYEKCANNHGYFLQDVDSQFLESSTIHPGSPDVLKTSL 134

Query: 125 DVESLVKE 132
           D++ L +E
Sbjct: 135 DLDGLSEE 142

Source: Amphimedon queenslandica

Species: Amphimedon queenslandica

Genus: Amphimedon

Family: Niphatidae

Order: Haplosclerida

Class: Demospongiae

Phylum: Porifera

Superkingdom: Eukaryota

>gi|405976772|gb|EKC41260.1| Pyroglutamyl-peptidase 1 [Crassostrea gigas]

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/83 (49%), Positives = 56/83 (67%), Gaps = 4/83 (4%)

Query: 27  VLITGFGPFKTHTINPSWEAVSLLPDR--IPNTNIEIVKEQIQVSYNYVDVTVPALWKKY 84
           ++ITGFGPF  H++N SW AV  L  R  +P+ ++ I  ++I V Y  V   VP LWK+ 
Sbjct: 9   IIITGFGPFGEHSVNASWVAVQNLKRRNLLPHLDVHI--QEIPVDYQEVSQIVPNLWKEK 66

Query: 85  NPDLVIHVGVSDMADKITLECKA 107
           NP LV+HVGVS MA+KIT+E + 
Sbjct: 67  NPQLVVHVGVSGMANKITIEQRG 89

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
UNIPROTKB|E1BN15	209	PGPEP1 "Uncharacterized protei	0.820	0.612	0.347	4.7e-16
UNIPROTKB|Q9NXJ5	209	PGPEP1 "Pyroglutamyl-peptidase	0.820	0.612	0.347	4.7e-16
MGI|MGI:1913772	209	Pgpep1 "pyroglutamyl-peptidase	0.820	0.612	0.347	4.7e-16
FB|FBgn0047178	224	CG32147 [Drosophila melanogast	0.493	0.343	0.444	1.1e-15
RGD|1303133	209	Pgpep1 "pyroglutamyl-peptidase	0.820	0.612	0.340	1.6e-15
UNIPROTKB|F1PDJ4	199	PGPEP1 "Uncharacterized protei	0.801	0.628	0.340	8.8e-15
UNIPROTKB|F1NR36	146	PGPEP1 "Uncharacterized protei	0.487	0.520	0.447	7.9e-14
ZFIN|ZDB-GENE-050522-88	208	pgpep1 "pyroglutamyl-peptidase	0.5	0.375	0.448	4.4e-13
UNIPROTKB|E2QUT4	228	PGPEP1L "Uncharacterized prote	0.519	0.355	0.397	2.8e-11
ZFIN|ZDB-GENE-050419-171	199	pgpep1l "pyroglutamyl-peptidas	0.544	0.427	0.390	1.5e-10

UNIPROTKB|E1BN15 PGPEP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 50/144 (34%), Positives = 78/144 (54%)

Query:    27 VLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNP 86
             V++TGFGPF  HT+N SW AV  L       ++++   +I V Y  V   +PALW+K++P
Sbjct:     8 VVVTGFGPFGEHTVNASWIAVQELEKLGLGDSVDLHVYEIPVEYQTVQRLIPALWEKHSP 67

Query:    87 DLVIHVGVSDMADKITLE-C------KAAELC------QCT--DSIDVIKTALDVESLVK 131
              LV+HVGVS MA  +TLE C      K  + C      QC   D  + I + +D++++ K
Sbjct:    68 QLVVHVGVSGMATAVTLEKCGHNKGYKGLDNCRFCPGSQCCVEDGPESIDSIIDMDAVCK 127

Query:   132 EFQTNKANINQVLDIDISRVDVCN 155
                T   +++  +  D  R  +C+
Sbjct:   128 RVTTLGLDVSVTISQDAGRY-LCD 150

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|Q9NXJ5 PGPEP1 "Pyroglutamyl-peptidase 1" [Homo sapiens (taxid:9606)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 50/144 (34%), Positives = 78/144 (54%)

Query:    27 VLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNP 86
             V++TGFGPF  HT+N SW AV  L       ++++   +I V Y  V   +PALW+K++P
Sbjct:     8 VVVTGFGPFGEHTVNASWIAVQELEKLGLGDSVDLHVYEIPVEYQTVQRLIPALWEKHSP 67

Query:    87 DLVIHVGVSDMADKITLE-C------KAAELC------QCT--DSIDVIKTALDVESLVK 131
              LV+HVGVS MA  +TLE C      K  + C      QC   D  + I + +D++++ K
Sbjct:    68 QLVVHVGVSGMATTVTLEKCGHNKGYKGLDNCRFCPGSQCCVEDGPESIDSIIDMDAVCK 127

Query:   132 EFQTNKANINQVLDIDISRVDVCN 155
                T   +++  +  D  R  +C+
Sbjct:   128 RVTTLGLDVSVTISQDAGRY-LCD 150

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

MGI|MGI:1913772 Pgpep1 "pyroglutamyl-peptidase I" [Mus musculus (taxid:10090)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 50/144 (34%), Positives = 78/144 (54%)

Query:    27 VLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNP 86
             V++TGFGPF  HT+N SW AV  L       ++++   +I V Y  V   +PALW+K++P
Sbjct:     8 VVVTGFGPFGEHTVNASWIAVQELEKLGLGDSVDLHVYEIPVEYQTVQRLIPALWEKHSP 67

Query:    87 DLVIHVGVSDMADKITLE-C------KAAELC------QCT--DSIDVIKTALDVESLVK 131
              LV+HVGVS MA  +TLE C      K  + C      QC   D  + I + +D++++ K
Sbjct:    68 QLVVHVGVSGMATTVTLEKCGHNKGYKGLDNCRFCPGSQCCVEDGPESIDSIIDMDAVCK 127

Query:   132 EFQTNKANINQVLDIDISRVDVCN 155
                T   +++  +  D  R  +C+
Sbjct:   128 RVTTLGLDVSVTISQDAGRY-LCD 150

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006508 "proteolysis" evidence=ISO;ISA

GO:0008233 "peptidase activity" evidence=ISA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

FB|FBgn0047178 CG32147 [Drosophila melanogaster (taxid:7227)]

 Score = 169 (64.5 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
 Identities = 36/81 (44%), Positives = 51/81 (62%)

Query:    27 VLITGFGPFKTH-TINPSWEAVSLLPDRIPNTNIE--IVKEQIQVSYNYVDVTVPALWKK 83
             ++++GFGPF  H  +N SWEAV LLP+ + +  IE  + K  + V Y  VD  V  +WK+
Sbjct:     9 IVVSGFGPFLGHEAVNASWEAVKLLPEILTHDGIEYDLEKRLVSVEYGAVDEAVAEIWKR 68

Query:    84 YNPDLVIHVGVSDMADKITLE 104
               P LVIHVGVS +A  + +E
Sbjct:    69 -QPYLVIHVGVSGVAKCVYIE 88

GO:0006508 "proteolysis" evidence=ISS

GO:0016920 "pyroglutamyl-peptidase activity" evidence=ISS

RGD|1303133 Pgpep1 "pyroglutamyl-peptidase I" [Rattus norvegicus (taxid:10116)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 49/144 (34%), Positives = 77/144 (53%)

Query:    27 VLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNP 86
             V++TGFGPF  H +N SW AV  L       ++++   +I V Y  V   +PALW+K++P
Sbjct:     8 VVVTGFGPFGEHAVNASWIAVQELEKLGLGDSVDLHVYEIPVEYQTVQRLIPALWEKHSP 67

Query:    87 DLVIHVGVSDMADKITLE-C------KAAELC------QCT--DSIDVIKTALDVESLVK 131
              LV+HVGVS MA  +TLE C      K  + C      QC   D  + I + +D++++ K
Sbjct:    68 QLVVHVGVSGMATTVTLEKCGHNKGYKGLDNCRFCPGSQCCVEDGPESIDSIIDMDAVCK 127

Query:   132 EFQTNKANINQVLDIDISRVDVCN 155
                T   +++  +  D  R  +C+
Sbjct:   128 RVTTLGLDVSVTISQDAGRY-LCD 150

GO:0005829 "cytosol" evidence=IDA

GO:0006508 "proteolysis" evidence=IMP

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

UNIPROTKB|F1PDJ4 PGPEP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 48/141 (34%), Positives = 75/141 (53%)

Query:    30 TGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLV 89
             +GFGPF  HT+N SW AV  L       ++++   +I V Y  V   +PALW+K++P LV
Sbjct:     1 SGFGPFGEHTVNASWIAVQELEKLGLGDSVDLHVYEIPVEYKTVQRLIPALWEKHSPQLV 60

Query:    90 IHVGVSDMADKITLE-C------KAAELC------QCT--DSIDVIKTALDVESLVKEFQ 134
             +HVGVS MA  +TLE C      K  + C      QC   D  + I + +D++++ K   
Sbjct:    61 VHVGVSGMATTVTLEKCGHNKGYKGLDNCRFCPGSQCCVEDGPESIDSIIDMDAVCKRVT 120

Query:   135 TNKANINQVLDIDISRVDVCN 155
             T   +++  +  D  R  +C+
Sbjct:   121 TLGLDVSVTISQDAGRY-LCD 140

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|F1NR36 PGPEP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 34/76 (44%), Positives = 47/76 (61%)

Query:    29 ITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDL 88
             ++GFGPF  H +N SW AV  L        +++   ++ V Y  V   +PALWKK++P L
Sbjct:     9 VSGFGPFGEHAVNASWIAVQELEKLGLRDGVDLHVYEVPVEYQTVQRLIPALWKKHSPQL 68

Query:    89 VIHVGVSDMADKITLE 104
             V+HVGVS MA  +TLE
Sbjct:    69 VVHVGVSGMATTVTLE 84

GO:0006508 "proteolysis" evidence=IEA

ZFIN|ZDB-GENE-050522-88 pgpep1 "pyroglutamyl-peptidase I" [Danio rerio (taxid:7955)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 35/78 (44%), Positives = 47/78 (60%)

Query:    27 VLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNP 86
             V++TGF PF  HT+N SW AV  L       +I +   ++ V Y  V   +P+LWK + P
Sbjct:     7 VVVTGFEPFGEHTVNASWVAVQELEKLGLGDDINLHVAEVPVEYQAVQNLLPSLWKDHLP 66

Query:    87 DLVIHVGVSDMADKITLE 104
              LV+HVGVS MA  +TLE
Sbjct:    67 QLVVHVGVSGMATTVTLE 84

GO:0006508 "proteolysis" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E2QUT4 PGPEP1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 33/83 (39%), Positives = 46/83 (55%)

Query:    27 VLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKE--QIQVSYNYVDVTVPALWKKY 84
             V++TGFGPF+ H +N SWEAV  L     N+ +E+     Q+ V Y  V   V  +W+  
Sbjct:     8 VVVTGFGPFRQHLVNSSWEAVKELSKLGLNSGMEVELRILQLPVDYREVKQRVTRIWEDL 67

Query:    85 NPDLVIHVGVSDMADKITLECKA 107
              P L +HVG+   A  I LE +A
Sbjct:    68 QPQLAVHVGLDASAKAILLERRA 90

GO:0006508 "proteolysis" evidence=IEA

ZFIN|ZDB-GENE-050419-171 pgpep1l "pyroglutamyl-peptidase I-like" [Danio rerio (taxid:7955)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 34/87 (39%), Positives = 46/87 (52%)

Query:    25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKY 84
             F VL  GFGPF+ + +NPSWEA   L      +NI I   +I VSY      +  +W+  
Sbjct:     6 FNVL--GFGPFRQYVVNPSWEAAKGLKMEGLGSNIGIHINEIPVSYAKCQQVLNDIWQTM 63

Query:    85 NPDLVIHVGVSDMADKITLECKAAELC 111
              P +VIH+G++  A  ITLE      C
Sbjct:    64 TPKMVIHLGIAPGAKGITLEQTGKNYC 90

GO:0006508 "proteolysis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19	LOW CONFIDENCE prediction!
3rd Layer	3.4.19.3	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	156
cd00501	194	cd00501, Peptidase_C15, Pyroglutamyl peptidase (PG	4e-29
PRK13197	215	PRK13197, PRK13197, pyrrolidone-carboxylate peptid	2e-15
COG2039	207	COG2039, Pcp, Pyrrolidone-carboxylate peptidase (N	4e-15
pfam01470	203	pfam01470, Peptidase_C15, Pyroglutamyl peptidase	2e-12
TIGR00504	212	TIGR00504, pyro_pdase, pyroglutamyl-peptidase I	4e-11
PRK13194	208	PRK13194, PRK13194, pyrrolidone-carboxylate peptid	3e-06
PRK13196	211	PRK13196, PRK13196, pyrrolidone-carboxylate peptid	5e-05

>gnl|CDD|238279 cd00501, Peptidase_C15, Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins

 Score =  105 bits (263), Expect = 4e-29
 Identities = 48/150 (32%), Positives = 68/150 (45%), Gaps = 28/150 (18%)

Query: 26  KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
           KVL+TGFGPF    +NPSWEAV  LP  I     E+V  ++ V +      +P L +++ 
Sbjct: 2   KVLVTGFGPFGGEPVNPSWEAVKELPKLILG-GAEVVGLELPVVFQKAVEVLPELIEEHK 60

Query: 86  PDLVIHVGVSDMADKITLECKA----------AELCQ----CTDSI--DVIKTALDVESL 129
           PDLVIHVG++     IT+E  A           E  Q               + L V+++
Sbjct: 61  PDLVIHVGLAGGRSTITIERVAINIDDARIPDNEGNQPIDEPIVPGGPAAYFSTLPVKAI 120

Query: 130 VKEFQTNKANINQVLDIDISRVD----VCN 155
           VK     +A I       +S  D    +CN
Sbjct: 121 VKAL--REAGI----PARVSN-DAGTYLCN 143

The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer. Length = 194

>gnl|CDD|237299 PRK13197, PRK13197, pyrrolidone-carboxylate peptidase; Provisional

 Score = 69.5 bits (171), Expect = 2e-15
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 26 KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
          K+L+TGF PF    INPSWEAV  LP +      EI+K Q+   +      +    ++  
Sbjct: 3  KILVTGFDPFGGEKINPSWEAVKQLPGKEIG-GAEIIKRQLPTVFGKSAEVLKEAIEEVQ 61

Query: 86 PDLVIHVG 93
          PD VI +G
Sbjct: 62 PDAVICIG 69

Length = 215

>gnl|CDD|224950 COG2039, Pcp, Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]

 Score = 68.9 bits (169), Expect = 4e-15
 Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 26  KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
           KVL+TGF PF    INPSWEAV  L  RI     E+    + V +      +     +  
Sbjct: 2   KVLVTGFEPFGGEPINPSWEAVKELNGRIIGGA-EVKGRILPVVFKKSIDALVQAIAEVQ 60

Query: 86  PDLVIHVGVSDMADKITLE 104
           PDLV+ +G +    KIT E
Sbjct: 61  PDLVLAIGQAGGRTKITPE 79

Length = 207

>gnl|CDD|201814 pfam01470, Peptidase_C15, Pyroglutamyl peptidase

 Score = 62.0 bits (151), Expect = 2e-12
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 26  KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
           KVL+TGF PF    INP+WEA   L  R       IV   +  S+      +     +  
Sbjct: 2   KVLVTGFEPFGGDPINPAWEAAKQLDGRT-IGGATIVGRILPTSFKKAADVLQQAIAEIK 60

Query: 86  PDLVIHVGVSDMADKITLE 104
           PD+VI +G +     IT+E
Sbjct: 61  PDIVIALGQAPGRSAITVE 79

Length = 203

>gnl|CDD|129595 TIGR00504, pyro_pdase, pyroglutamyl-peptidase I

 Score = 58.3 bits (141), Expect = 4e-11
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 26  KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
           KVL+TGF PF    +NPSWEA   L  R       +V E +  ++      +     +  
Sbjct: 1   KVLLTGFEPFGVDPVNPSWEAAEELDGRTI--GATVVAEILPNTFFEAIEALQQAIDEIE 58

Query: 86  PDLVIHVGVSDMADKITLECKAAELCQC 113
           PD+VI +G++     IT+E  A  +   
Sbjct: 59  PDIVIMLGLAPGRSMITVERVAINVNDA 86

Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 212

>gnl|CDD|183887 PRK13194, PRK13194, pyrrolidone-carboxylate peptidase; Provisional

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 26  KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
           KVL+TGF PF     NP+ + V  L  +    + ++    + VS+      +  +  +  
Sbjct: 2   KVLVTGFEPFGGDKKNPTMDIVKALDGKKIG-DAKVFGRVLPVSFKRAREELEKVLDEIK 60

Query: 86  PDLVIHVGVSDMADKITLE 104
           PD+ I++G++     I++E
Sbjct: 61  PDITINLGLAPGRTHISVE 79

Length = 208

>gnl|CDD|171895 PRK13196, PRK13196, pyrrolidone-carboxylate peptidase; Provisional

 Score = 41.5 bits (97), Expect = 5e-05
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 27  VLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNP 86
           +L+TGF PF TH +NPS +A   L        + +    + V        +  L  +  P
Sbjct: 4   LLLTGFEPFHTHPVNPSAQAAQALNGEQAG-ALRVHSALLPVEPRAAMAALSRLLDELQP 62

Query: 87  DLVIHVGVSDMADKITLE 104
             V+  G++    ++TLE
Sbjct: 63  SAVLLTGLAAGRPQVTLE 80

Length = 211

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	156
PF01470	202	Peptidase_C15: Pyroglutamyl peptidase This is fami	100.0
PRK13195	222	pyrrolidone-carboxylate peptidase; Provisional	100.0
PRK13194	208	pyrrolidone-carboxylate peptidase; Provisional	100.0
PRK13193	209	pyrrolidone-carboxylate peptidase; Provisional	100.0
PRK13196	211	pyrrolidone-carboxylate peptidase; Provisional	100.0
PRK13197	215	pyrrolidone-carboxylate peptidase; Provisional	100.0
cd00501	194	Peptidase_C15 Pyroglutamyl peptidase (PGP) type I,	100.0
TIGR00504	212	pyro_pdase pyroglutamyl-peptidase I. Alternate nam	100.0
COG2039	207	Pcp Pyrrolidone-carboxylate peptidase (N-terminal	100.0
PF06162	166	DUF976: Caenorhabditis elegans protein of unknown	99.84
KOG4755|consensus	213		99.65
PLN02778	298	3,5-epimerase/4-reductase	85.39

>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification

Probab=100.00  E-value=1.7e-43  Score=279.58  Aligned_cols=128  Identities=34%  Similarity=0.536  Sum_probs=103.9

Q ss_pred             eEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEe
Q psy4808          25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLE  104 (156)
Q Consensus        25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE  104 (156)
                      |+|||||||||+++++||||++++.|++... .+++|+..+|||+|+.+.+.+.++|++++||+|||+|++++++.|+||
T Consensus         1 m~ILvTGFgpF~~~~~NpS~~~v~~L~~~~~-~~~~v~~~~lPV~~~~~~~~l~~~l~~~~PdlVIhlGva~~~~~i~lE   79 (202)
T PF01470_consen    1 MRILVTGFGPFGGVPVNPSWELVKRLPGELI-GGAEVHTRELPVSYEKAFEALEELLEEHQPDLVIHLGVAGGRKSIRLE   79 (202)
T ss_dssp             EEEEEEEE-S-TT-SS-HHHHHHHHHTTSEE-TTEEEEEEEE-SSHHHHHHHHHHHHHHH--SEEEEEEE-TT-SSEEEE
T ss_pred             CEEEEecccCCCCCCCChHHHHHHHcCCCcC-CCceEEEEEecCchHhHHHHHHHHHHhcCCcEEEEEeecCCcchhhHH
Confidence            7899999999999999999999999998666 789999999999999999999999999999999999999999999999


Q ss_pred             eeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808         105 CKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR  156 (156)
Q Consensus       105 ~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~  156 (156)
                      ++|+|    ++||++            ||..|+|+||+++|+++|+++  |+|+++|+|||+| |||.
T Consensus        80 r~A~N~~d~~~pD~~G~~p~~~~i~~~gp~~~~t~lp~~~l~~~l~~~--gip~~~S~dAG~Y-lCN~  144 (202)
T PF01470_consen   80 RVAINWADFRIPDNDGRQPKDEPIVPDGPEAYFTTLPVRALVEALREA--GIPVEISNDAGRY-LCNY  144 (202)
T ss_dssp             SEEES-BE-SS--TTS---ESB-SSTTS-SEEE-BS-HHHHHHHHHHT--T--EEEES---SS-HHHH
T ss_pred             HHhhccCCCcCCcccCCccCCccccCCCccceecCCCHHHHHHHHHHc--CCCCcccCChhhh-HHHH
Confidence            99999    578887            689999999999999999999  9999999999999 9994

; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....

>PRK13195 pyrrolidone-carboxylate peptidase; Provisional

Probab=100.00  E-value=3.6e-42  Score=275.01  Aligned_cols=128  Identities=20%  Similarity=0.264  Sum_probs=122.2

Q ss_pred             eEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEe
Q psy4808          25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLE  104 (156)
Q Consensus        25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE  104 (156)
                      |+|||||||||++++.||||++++.|.+..+ .+++|...+|||+|+.+.+.+.+++++++||+|||+|++++++.|++|
T Consensus         2 ~~ILvTGF~PFgg~~~NPS~~~v~~L~~~~~-~~~~v~~~~lPv~f~~~~~~l~~~i~~~~Pd~Vi~~G~a~gr~~itlE   80 (222)
T PRK13195          2 SKVLVTGFGPYGVTPVNPAQLTAEELDGRTI-AGATVISRIVPNTFFESIAAAQQAIAEIEPALVIMLGEYPGRSMITVE   80 (222)
T ss_pred             CEEEEeeecCCCCCCcCchHHHHHhcccccc-CCeEEEEEEeCeEehHHHHHHHHHHHHHCCCEEEEeCccCCcCceEeE
Confidence            5799999999999999999999999998766 688999999999999999999999999999999999999999999999


Q ss_pred             eeecc----c---cCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808         105 CKAAE----L---CQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR  156 (156)
Q Consensus       105 ~~A~N----~---~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~  156 (156)
                      |+|+|    +   +||++            ||..|+|+||+++|+++|++.  |+|+++|+|||+| |||+
T Consensus        81 rvAiN~~d~~~~~ipDn~G~~p~~~~I~~~gp~ay~stLpv~~iv~~l~~~--gipa~vS~~AGtY-vCN~  148 (222)
T PRK13195         81 RLAQNVNDCGRYGLADCAGRVLVGEPTDPAGPVAYHATVPVRAMVLAMRKA--GVPADVSDAAGTF-VCNH  148 (222)
T ss_pred             EEEEecccccccCCCCCCCCcCCCCcccCCCcceeecCCCHHHHHHHHHhc--CCCceEecCCCcc-eehH
Confidence            99999    2   89987            689999999999999999999  9999999999999 9995

>PRK13194 pyrrolidone-carboxylate peptidase; Provisional

Probab=100.00  E-value=2.9e-42  Score=273.69  Aligned_cols=128  Identities=24%  Similarity=0.402  Sum_probs=122.0

Q ss_pred             eEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEe
Q psy4808          25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLE  104 (156)
Q Consensus        25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE  104 (156)
                      |+|||||||||++++.||||++++.|++..+ .+++|+..+|||+|+.+.+.+.++|++++||+|||+|++++++.|+||
T Consensus         1 M~ILvTGF~PF~~~~~NPS~~~~~~L~~~~~-~~~~v~~~~LPV~~~~~~~~l~~~l~~~~Pd~vlhlG~a~~r~~i~lE   79 (208)
T PRK13194          1 MKVLVTGFEPFGGDKKNPTMDIVKALDGKKI-GDAKVFGRVLPVSFKRAREELEKVLDEIKPDITINLGLAPGRTHISVE   79 (208)
T ss_pred             CEEEEEeeCCCCCCCCCcHHHHHHhcccccc-CCcEEEEEEeCCchHhHHHHHHHHHHHhCCCEEEEeeccCCcceEEEE
Confidence            5699999999999999999999999998876 678899999999999999999999999999999999999999999999


Q ss_pred             eeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808         105 CKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR  156 (156)
Q Consensus       105 ~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~  156 (156)
                      ++|+|    ++||++            ||..|+|+||+++++++|++.  |+|+++|+|||+| |||.
T Consensus        80 r~A~N~~~~~~pD~~G~~p~~~~i~~~gp~~y~ttlp~~~l~~~l~~~--gip~~~S~dAG~y-lCN~  144 (208)
T PRK13194         80 RVAVNAIDARIPDNDGEKPEDEPIVEGAPAAYFATLPTREIVEELKKN--GIPAVLSYSAGTY-LCNY  144 (208)
T ss_pred             EEEEcCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCHHHHHHHHHhc--CCCcEEeCCCccc-hhHH
Confidence            99999    679987            588999999999999999999  9999999999999 9994

>PRK13193 pyrrolidone-carboxylate peptidase; Provisional

Probab=100.00  E-value=3.2e-42  Score=273.61  Aligned_cols=128  Identities=27%  Similarity=0.314  Sum_probs=121.7

Q ss_pred             eEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEe
Q psy4808          25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLE  104 (156)
Q Consensus        25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE  104 (156)
                      |+|||||||||++++.||||+++++|++... .+.+|+..+|||+|+.+.+.+.+++++++||+|||+|++++++.|+||
T Consensus         1 M~vLiTGF~PF~g~~~NPS~~~v~~L~~~~~-~~~~v~~~~LPv~~~~~~~~l~~~~~~~~Pd~vl~~G~a~~r~~i~lE   79 (209)
T PRK13193          1 MTVLLFGFEPFLEYKENPSQLIVEALNGSTI-LKEEVKGVILPVEYEKIEDLIVTKIREMKPILTLGIGVAPGRAKITPE   79 (209)
T ss_pred             CEEEEEeeCCCCCCCCCcHHHHHHHhhcccc-CCceEEEEEeCCcHHHHHHHHHHHHHHHCCCEEEEecccCCcCceEEE
Confidence            4699999999999999999999999998766 678899999999999999999999999999999999999999999999


Q ss_pred             eeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808         105 CKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR  156 (156)
Q Consensus       105 ~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~  156 (156)
                      ++|+|    ++||++            ||..|+|+||+++|+++|++.  |+|+++|+|||+| |||+
T Consensus        80 r~AiN~~d~~~pDn~G~~p~~~~I~~~gp~~~~t~lp~~~l~~~l~~~--Gip~~~S~~AG~y-vCN~  144 (209)
T PRK13193         80 KIAINYKYSREGDNAGKKYKGEKIDPLGQDGIFTNIPVEDLVDLLNEN--GIPAELSLSAGSY-LCNN  144 (209)
T ss_pred             EEEEccCcCcCCccCCCCcCCCcccCCCcceeecCCCHHHHHHHHHhc--CCCceEecCCccc-hhHH
Confidence            99999    679977            688999999999999999999  9999999999999 9994

>PRK13196 pyrrolidone-carboxylate peptidase; Provisional

Probab=100.00  E-value=1e-41  Score=271.09  Aligned_cols=129  Identities=21%  Similarity=0.306  Sum_probs=122.8

Q ss_pred             ceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeE
Q psy4808          24 SFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITL  103 (156)
Q Consensus        24 ~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~l  103 (156)
                      +|+|||||||||++++.||||+++++|++... .+++|+..+|||+|+.+.+.++++|++++||+|||+|++++++.|+|
T Consensus         1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~~~~-~~~~v~~~~LPV~~~~~~~~l~~~~~~~~Pd~vi~~G~a~gr~~i~l   79 (211)
T PRK13196          1 MPTLLLTGFEPFHTHPVNPSAQAAQALNGEQA-GALRVHSALLPVEPRAAMAALSRLLDELQPSAVLLTGLAAGRPQVTL   79 (211)
T ss_pred             CCEEEEEeecCCCCCCCCcHHHHHHhcccccC-CCcEEEEEEeCCChhHHHHHHHHHHHHhCCCEEEEecccCCcCcEEE
Confidence            47899999999999999999999999999876 67889999999999999999999999999999999999999999999


Q ss_pred             eeeecc----ccCCCC--------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808         104 ECKAAE----LCQCTD--------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR  156 (156)
Q Consensus       104 E~~A~N----~~Pd~~--------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~  156 (156)
                      |++|+|    ++||++              ||+.|+|+||+++|++++++.  |+|+++|+|||+| |||+
T Consensus        80 Er~A~N~~d~~~pDn~G~~~~~~~i~~~~~gp~~y~stLpv~~l~~~l~~~--gip~~iS~~AG~Y-lCN~  147 (211)
T PRK13196         80 ERVAVNVMDFSIPDNAGQTYRDTPVCTEPDAPAAYLSTLPLRAILAAWHDA--GIPGHISNTAGLY-VCNF  147 (211)
T ss_pred             EEEEeccccCCCCCCCCCCCCCCCcccCCCCccceecCCCHHHHHHHHHhc--CCCceEccCCCce-eehH
Confidence            999999    578877              588999999999999999999  9999999999999 9994

>PRK13197 pyrrolidone-carboxylate peptidase; Provisional

Probab=100.00  E-value=6.4e-41  Score=267.22  Aligned_cols=128  Identities=29%  Similarity=0.451  Sum_probs=122.2

Q ss_pred             eEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEe
Q psy4808          25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLE  104 (156)
Q Consensus        25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE  104 (156)
                      |+|||||||||++++.||||+++++|++... .+++|++.+|||+|+.+.+.+.+++++++||+|||+|++++++.|+||
T Consensus         2 ~~ILvTGF~PF~~~~~NPS~~~~~~L~~~~~-~~~~i~~~~lPV~y~~~~~~l~~~l~~~~Pd~vih~G~a~~~~~i~lE   80 (215)
T PRK13197          2 MKILVTGFDPFGGEKINPSWEAVKQLPGKEI-GGAEIIKRQLPTVFGKSAEVLKEAIEEVQPDAVICIGQAGGRTDITPE   80 (215)
T ss_pred             CEEEEeeccCCCCCCCCcHHHHHHHcccccc-CCcEEEEEEECCChHHHHHHHHHHHHHhCCCEEEEeccCCCCCcEEeE
Confidence            6799999999999999999999999998877 789999999999999999999999999999999999999999999999


Q ss_pred             eeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808         105 CKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR  156 (156)
Q Consensus       105 ~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~  156 (156)
                      ++|+|    ++||++            ||+.|+|+||+++|++++++.  |+|+++|+|||+| |||+
T Consensus        81 r~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~t~Lp~~~l~~~l~~~--gip~~~S~dAG~Y-lCN~  145 (215)
T PRK13197         81 RVAINIDDARIPDNEGNQPIDEPIVEDGPAAYFSTLPIKAMVKAIREA--GIPASVSNTAGTF-VCNH  145 (215)
T ss_pred             eeecccCCccCCCCCCCCcCCCcccCCCCceeEcCCCHHHHHHHHHHc--CCCceeccCCCce-eehH
Confidence            99999    568887            689999999999999999999  9999999999999 9994

>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins

Probab=100.00  E-value=5.6e-40  Score=257.47  Aligned_cols=128  Identities=34%  Similarity=0.532  Sum_probs=121.7

Q ss_pred             eEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEe
Q psy4808          25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLE  104 (156)
Q Consensus        25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE  104 (156)
                      |+|||||||||++++.||||+++++|++... .+++|+..+|||+|+.+.+.+.++|++++||+|||+|++++++.|+||
T Consensus         1 ~~vLvTGF~PF~~~~~NpS~~~v~~L~~~~~-~~~~i~~~~lpv~y~~~~~~~~~~~~~~~pd~vlhlG~~~~~~~i~lE   79 (194)
T cd00501           1 KKVLVTGFGPFGGEPVNPSWEAVKELPKLIL-GGAEVVGLELPVVFQKAVEVLPELIEEHKPDLVIHVGLAGGRSTITIE   79 (194)
T ss_pred             CEEEEEecCCCCCCCCChHHHHHHhcccccc-CCcEEEEEEcCccHHHHHHHHHHHHHHhCCCEEEEecccCCCCceeEE
Confidence            5799999999999999999999999999876 789999999999999999999999999999999999999999999999


Q ss_pred             eeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808         105 CKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR  156 (156)
Q Consensus       105 ~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~  156 (156)
                      ++|+|    +.||++            ||..|+|++|++++++++++.  |+++++|+|||+| |||.
T Consensus        80 ~~A~n~~~~~~pD~~G~~p~~~~i~~~g~~~~~t~lp~~~l~~~l~~~--g~~~~~S~dAG~Y-lCn~  144 (194)
T cd00501          80 RVAINIDDARIPDNEGNQPIDEPIVPGGPAAYFSTLPVKAIVKALREA--GIPARVSNDAGTY-LCNH  144 (194)
T ss_pred             eEEEccCCCCCCCCCCCcCCCCcccCCCCCeeeecCCHHHHHHHHHhc--CCCceEcCCCCce-eeHH
Confidence            99999    468876            588999999999999999999  9999999999999 9994

The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.

>TIGR00504 pyro_pdase pyroglutamyl-peptidase I

Probab=100.00  E-value=5.4e-40  Score=261.40  Aligned_cols=126  Identities=27%  Similarity=0.391  Sum_probs=119.9

Q ss_pred             EEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEee
Q psy4808          26 KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLEC  105 (156)
Q Consensus        26 ~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE~  105 (156)
                      +|||||||||++++.||||++++.|++..+  +++|+..+|||+|+.+.+.+.++|++++||+|||+|++++++.|+||+
T Consensus         1 ~ILvTGF~PF~~~~~NPS~~~v~~L~~~~~--g~~i~~~~lPV~~~~~~~~l~~~l~~~~Pd~vi~~G~a~g~~~i~lEr   78 (212)
T TIGR00504         1 KVLLTGFEPFGVDPVNPSWEAAEELDGRTI--GATVVAEILPNTFFEAIEALQQAIDEIEPDIVIMLGLAPGRSMITVER   78 (212)
T ss_pred             CEEEEeccCCCCCCCCcHHHHHHhcccCcC--CcEEEEEEeCCChHHHHHHHHHHHHHHCCCEEEEeccCCCcCceeeEE
Confidence            499999999999999999999999998865  588999999999999999999999999999999999999999999999


Q ss_pred             eecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808         106 KAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR  156 (156)
Q Consensus       106 ~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~  156 (156)
                      +|+|    ++||++            ||..|+|+||+++|++++++.  |+++++|+|||+| |||+
T Consensus        79 ~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~ttLpv~~l~~~l~~~--gip~~~S~dAG~y-lCN~  142 (212)
T TIGR00504        79 VAINVNDARIPDNAGEQPIDEPIVPDGPAAYFATLPVRAMVLAMKKA--GIPADVSYTAGTF-VCNH  142 (212)
T ss_pred             eEeccCcCCCCCCCCCccCCCcccCCCCceeecCCCHHHHHHHHHHc--CCCeeEeCCCCce-eeHH
Confidence            9999    579987            688999999999999999999  9999999999999 9994

Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases.

>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-40  Score=257.24  Aligned_cols=128  Identities=30%  Similarity=0.406  Sum_probs=124.2

Q ss_pred             eEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEe
Q psy4808          25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLE  104 (156)
Q Consensus        25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE  104 (156)
                      ++||||||+||++++.||||+++++|++..+ .+.+|...+|||+|.++.+.+.+.+++.+||+||++|+++++..|++|
T Consensus         1 ~kvLvTGFePF~~~~~NPs~e~vk~L~~~~i-~g~~V~~~~lP~~f~~s~~~l~~~i~~~qPd~vl~iG~A~GR~~iT~E   79 (207)
T COG2039           1 MKVLVTGFEPFGGEPINPSWEAVKELNGRII-GGAEVKGRILPVVFKKSIDALVQAIAEVQPDLVLAIGQAGGRTKITPE   79 (207)
T ss_pred             CeEEEEeccCCCCCCCChHHHHHHhcCcccc-cCceEEEEEcCccHHHHHHHHHHHHHhhCCCeEEEecccCCCCcCChh
Confidence            4799999999999999999999999999988 789999999999999999999999999999999999999999999999


Q ss_pred             eeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808         105 CKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR  156 (156)
Q Consensus       105 ~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~  156 (156)
                      |+|.|    ++|||+            ||..|+|+||+++|+.+++++  |+|..+|+.||+| |||+
T Consensus        80 RVAINv~DarIpDN~G~qpiDepI~~dGpaAYfstlPvkamv~~~~~~--GiPA~vS~sAGTy-vCNh  144 (207)
T COG2039          80 RVAINVDDARIPDNAGNQPIDEPIDPDGPAAYFSTLPVKAMVQAIREA--GIPASVSNSAGTY-VCNH  144 (207)
T ss_pred             heeeccccccCCCCCCCCcCCCccCCCCchhhhhcCcHHHHHHHHHHc--CCChhhhcccchh-hhHH
Confidence            99999    889998            789999999999999999999  9999999999999 9995

>PF06162 DUF976: Caenorhabditis elegans protein of unknown function (DUF976); InterPro: IPR010381 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=99.84  E-value=1.2e-20  Score=143.19  Aligned_cols=120  Identities=32%  Similarity=0.458  Sum_probs=97.5

Q ss_pred             ceEEEEEeec-CCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeee
Q psy4808          24 SFKVLITGFG-PFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKIT  102 (156)
Q Consensus        24 ~~~VliTGFg-pF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~  102 (156)
                      .+.++||||+ ||.+...||+-.+.++|.+..  .. .+....+|++|+.|.+.++++|+. +||++||||.|+..+.|+
T Consensus        23 ~~~~vvTgF~~~fe~~nps~~viv~DEL~k~~--~~-~~l~~K~~~sYe~V~ekvpel~~~-~~~~viHL~~Hs~kNtI~   98 (166)
T PF06162_consen   23 KKKVVVTGFDGPFEGENPSSAVIVLDELEKEG--ED-KILFFKMEVSYEEVDEKVPELWKE-QPDFVIHLASHSVKNTIY   98 (166)
T ss_pred             ecceeEEecCCCccCCCCCcceeeHHHhhcCC--cc-ceeeeeccchHHHHHHHhHHHHhh-CCCeEEEecCCCCcceEE
Confidence            3568899996 997754444444459999875  23 334449999999999999999987 699999999999999999


Q ss_pred             Eeeeecc----------ccCCCC------CCceEEecCCHHHHHHHHHhhc-------CCCceEEcCC
Q psy4808         103 LECKAAE----------LCQCTD------SIDVIKTALDVESLVKEFQTNK-------ANINQVLDID  147 (156)
Q Consensus       103 lE~~A~N----------~~Pd~~------gp~~~~T~l~~~~l~~~l~~~~-------~g~~v~~S~d  147 (156)
                      +|+.|+-          ..|.++      ....++|.+|++.|++++++.+       +|+.|+.|+|
T Consensus        99 ieq~AFsdGY~~~D~nG~vPegnkv~~~~~e~~lkt~vdce~Lvkev~E~cglDg~KyGgL~Veksed  166 (166)
T PF06162_consen   99 IEQKAFSDGYCQPDKNGCVPEGNKVKCESEETVLKTFVDCEELVKEVNEKCGLDGEKYGGLKVEKSED  166 (166)
T ss_pred             EEehhhcCCCcCCCCCCcCCCCCeeccCccccccccccCHHHHHHHHHHHhcccccccCcEEEEecCC
Confidence            9999997          234443      2468999999999999999997       6889999986

>KOG4755|consensus

Probab=99.65  E-value=7.9e-16  Score=121.84  Aligned_cols=133  Identities=19%  Similarity=0.228  Sum_probs=107.5

Q ss_pred             CCCCCceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCC
Q psy4808          19 LDVTASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMA   98 (156)
Q Consensus        19 ~~~~~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~   98 (156)
                      ....+.++|+.+.++||.+...||++.++++|.+... ....+.. .+--+|+.+.+.+.++|+++. +..||+|.|+..
T Consensus        14 ~~i~~~rkvv~v~~~p~~g~~~~~aviv~dEl~k~~~-~s~~l~~-~~~~sy~~v~~~i~e~~~~~~-~~aIhl~sh~~k   90 (213)
T KOG4755|consen   14 IPITGFRKVVTVFDFPFFGKQPSPAVIVLDELVKKGG-VSKYLCF-KMCTSYETVDEIILELWEEHL-QSAIHLGSHSQK   90 (213)
T ss_pred             eecCcceEEEEeccCCccCccCCchhhhHHHHHHcCC-ceeccee-cceechhhHhHHHHHhhccce-eEEEEecccccC
Confidence            4445566787777778766444999999999998763 1112222 233399999999999999977 999999999999


Q ss_pred             CeeeEeeeecc----------ccCCCC-----CC-ceEEecCCHHHHHHHHHhhc-------CCCceEEcCCCCcccccC
Q psy4808          99 DKITLECKAAE----------LCQCTD-----SI-DVIKTALDVESLVKEFQTNK-------ANINQVLDIDISRVDVCN  155 (156)
Q Consensus        99 ~~i~lE~~A~N----------~~Pd~~-----gp-~~~~T~l~~~~l~~~l~~~~-------~g~~v~~S~dAG~yllCN  155 (156)
                      +.|.+|+.|++          .+|..+     || ...+|.+++..+++...+.+       +|++|++|.||||| |||
T Consensus        91 nti~i~~~af~~gy~~~d~~g~vp~~nkv~~~~~d~~~~s~i~c~~vv~~v~e~~~~~~~~~~gl~V~~s~dagR~-lc~  169 (213)
T KOG4755|consen   91 NTIQIEQSAFSSGYTQKDKCGKVPEGNKVKCDGPDTGGRSCINCEIVVKDVNERCASDGQKFGGLEVEISEDAGRY-LCG  169 (213)
T ss_pred             cEEEEEEecccCCccchhhcccccCCceeEeccccccccccccHHHHHHhhhhhhhhccccCCceEEEEcCcccce-ech
Confidence            99999999997          556666     56 56789999999999998876       57999999999999 998

>PLN02778 3,5-epimerase/4-reductase

Probab=85.39  E-value=1.8  Score=35.53  Aligned_cols=62  Identities=16%  Similarity=0.079  Sum_probs=38.4

Q ss_pred             CCceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccC
Q psy4808          22 TASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSD   96 (156)
Q Consensus        22 ~~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~   96 (156)
                      .++|+|||||=.-|-|      ..+++.|....    .++...  ...... .+.+...++..+||+|||+.-..
T Consensus         7 ~~~~kiLVtG~tGfiG------~~l~~~L~~~g----~~V~~~--~~~~~~-~~~v~~~l~~~~~D~ViH~Aa~~   68 (298)
T PLN02778          7 SATLKFLIYGKTGWIG------GLLGKLCQEQG----IDFHYG--SGRLEN-RASLEADIDAVKPTHVFNAAGVT   68 (298)
T ss_pred             CCCCeEEEECCCCHHH------HHHHHHHHhCC----CEEEEe--cCccCC-HHHHHHHHHhcCCCEEEECCccc
Confidence            3568999999999966      45777776543    233211  111111 13455566667899999998533

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	156
3rnz_A	223	Crystal Structure Of Bacillus Amyloliquefaciens Pyr		4e-08
1aug_A	215	Crystal Structure Of The Pyroglutamyl Peptidase I F		6e-08
4hps_A	228	Crystal Structure Of A Pyrrolidone-Carboxylate Pept		3e-06
4gxh_A	216	Crystal Structure Of A Pyrrolidone-Carboxylate Pept		4e-06
3giu_A	215	1.25 Angstrom Crystal Structure Of Pyrrolidone-Carb		7e-06
1iu8_A	206	The X-Ray Crystal Structure Of Pyrrolidone-Carboxyl		7e-05

>pdb|3RNZ|A Chain A, Crystal Structure Of Bacillus Amyloliquefaciens Pyroglutamyl Peptidase I Length = 223

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 26  KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQ-VSYNYVDVTVPALWKKY 84
           KVL+TGF PF   T+NPSWEAV  L +        IV EQ+  V Y  + V   A+ KK+
Sbjct: 4   KVLLTGFDPFGGETVNPSWEAVKRL-NGAAEGPASIVSEQVPTVFYKSLAVLREAM-KKH 61
Query: 85  NPDLVIHVGVSDMADKITLECKAAELCQC 113
            PD++I VG +    +IT E  A  L + 
Sbjct: 62  QPDIIICVGQAGGRMQITPERVAINLNEA 90

>pdb|1AUG|A Chain A, Crystal Structure Of The Pyroglutamyl Peptidase I From Bacillus Amyloliquefaciens Length = 215

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 26  KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQ-VSYNYVDVTVPALWKKY 84
           KVL+TGF PF   T+NPSWEAV  L +        IV EQ+  V Y  + V   A+ KK+
Sbjct: 4   KVLLTGFDPFGGETVNPSWEAVKRL-NGAAEGPASIVSEQVPTVFYKSLAVLREAI-KKH 61
Query: 85  NPDLVIHVGVSDMADKITLECKAAELCQC 113
            PD++I VG +    +IT E  A  L + 
Sbjct: 62  QPDIIICVGQAGGRMQITPERVAINLNEA 90

>pdb|4HPS|A Chain A, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004 In Space Group P21 Length = 228

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 27  VLITGFGPFKTHTINPSWEAVS-LLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
           +L+T F PF    INPSWEA+  L   ++   NIEI   QI   ++     + A   KY 
Sbjct: 26  ILVTAFDPFGGEAINPSWEAIKPLQGSQVFGANIEIC--QIPCIFDTSLEHLYAAVDKYQ 83
Query: 86  PDLVIHVGVSDMADKITLE 104
           P+LVI VG +     IT+E
Sbjct: 84  PELVISVGQAGGRTNITVE 102

>pdb|4GXH|A Chain A, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004 Length = 216

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 27  VLITGFGPFKTHTINPSWEAVS-LLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
           +L+T F PF    INPSWEA+  L   ++   NIEI   QI   ++     + A   KY 
Sbjct: 5   ILVTAFDPFGGEAINPSWEAIKPLQGSQVFGANIEIC--QIPCIFDTSLEHLYAAVDKYQ 62
Query: 86  PDLVIHVGVSDMADKITLE 104
           P+LVI VG +     IT+E
Sbjct: 63  PELVISVGQAGGRTNITVE 81

>pdb|3GIU|A Chain A, 1.25 Angstrom Crystal Structure Of Pyrrolidone-Carboxylate Peptidase (Pcp) From Staphylococcus Aureus Length = 215

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 26  KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
            +L+TGF PF    INPSWEAV+ L D I    I+  K ++  S+  VD  +       +
Sbjct: 5   HILVTGFAPFDNQNINPSWEAVTQLEDIIGTHTID--KLKLPTSFKKVDNIINKTLASNH 62
Query: 86  PDLVIHVGVSDMADKITLE 104
            D+V+ +G +   + IT E
Sbjct: 63  YDVVLAIGQAGGRNAITPE 81

>pdb|1IU8|A Chain A, The X-Ray Crystal Structure Of Pyrrolidone-Carboxylate Peptidase From Hyperthermophilic Archaeon Pyrococcus Horikoshii Length = 206

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 25  FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKY 84
            K+L+TGF PF     NP+ + V  L +RIP    E+V E + VS+      +  +    
Sbjct: 1   MKILLTGFEPFGGDDKNPTMDIVEALSERIP----EVVGEILPVSFKRAREKLLKVLDDV 56
Query: 85  NPDLVIHVGVSDMADKITLE 104
            PD+ I++G++     I++E
Sbjct: 57  RPDITINLGLAPGRTHISVE 76

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	156
3lac_A	215	Pyrrolidone-carboxylate peptidase; alpha beta clas	5e-23
3ro0_A	223	Pyrrolidone-carboxylate peptidase; hydrolase-hydro	4e-22
2ebj_A	192	Pyrrolidone carboxyl peptidase; TTHA08 degradation	5e-22
3giu_A	215	Pyrrolidone-carboxylate peptidase; IDP00836, hydro	7e-22
1x10_A	208	Pyrrolidone-carboxylate peptidase; stability of pr	9e-22
1iu8_A	206	Pyrrolidone-carboxylate peptidase; hydrolase, thio	1e-21
1a2z_A	220	Pyrrolidone carboxyl peptidase; N-pyroglutamate hy	2e-21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis} Length = 215

 Score = 89.6 bits (221), Expect = 5e-23
 Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 17/131 (12%)

Query: 26  KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
            VL+TGF PF   +INP+WE    L ++      +I+ +Q+   ++     +    ++  
Sbjct: 3   TVLLTGFDPFGGESINPAWEVAKSLHEKTI-GEYKIISKQVPTVFHKSISVLKEYIEELA 61

Query: 86  PDLVIHVGVSDMADKITLECKA----------------AELCQCTDSIDVIKTALDVESL 129
           P+ +I +G +     IT+E  A                 ++    +      + L ++++
Sbjct: 62  PEFIICIGQAGGRPDITIERVAINIDDARIADNEGNQPVDVPVVEEGPAAYWSTLPMKAI 121

Query: 130 VKEFQTNKANI 140
           VK+ Q      
Sbjct: 122 VKKLQEEGIPA 132

>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} PDB: 3rnz_A* 1aug_A Length = 223

 Score = 87.2 bits (215), Expect = 4e-22
 Identities = 36/131 (27%), Positives = 51/131 (38%), Gaps = 17/131 (12%)

Query: 26  KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
           KVL+TGF PF   T+NPSWEAV  L          IV EQ+   +      +    KK+ 
Sbjct: 4   KVLLTGFDPFGGETVNPSWEAVKRLNGAAEG-PASIVSEQVPTVFYKSLAVLREAMKKHQ 62

Query: 86  PDLVIHVGVSDMADKITLECKA----------------AELCQCTDSIDVIKTALDVESL 129
           PD++I VG +    +IT E  A                              T L ++ +
Sbjct: 63  PDIIICVGQAGGRMQITPERVAINLNEARIPDNEGNQPVGEDISQGGPAAYWTGLPIKRI 122

Query: 130 VKEFQTNKANI 140
           V+E +      
Sbjct: 123 VEEIKKEGIPA 133

>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and peptides, structural genomics; 1.90A {Thermus thermophilus} Length = 192

 Score = 86.1 bits (212), Expect = 5e-22
 Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 19/126 (15%)

Query: 27  VLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNP 86
           +L+TGF PF +   NPS   + LLP  +      + K  + V    +   +  L  +  P
Sbjct: 2   ILVTGFEPFGSLEHNPSQALLDLLPSEVD--GKPLRKAVLPVDAEALGEALEDLH-REGP 58

Query: 87  DLVIHVGVSDMADKITLECKA----------------AELCQCTDSIDVIKTALDVESLV 130
             V+H+G+++    +TLE  A                 +L         +     V+ ++
Sbjct: 59  KAVLHLGLAEDRPVLTLERLAVNLLDFPRPDNRGRVLEDLPIVPGGPLALPARFPVKPVL 118

Query: 131 KEFQTN 136
             ++  
Sbjct: 119 ARWREA 124

>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} Length = 215

 Score = 86.4 bits (213), Expect = 7e-22
 Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 18/131 (13%)

Query: 26  KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
            +L+TGF PF    INPSWEAV+ L D I      I K ++  S+  VD  +       +
Sbjct: 5   HILVTGFAPFDNQNINPSWEAVTQLEDIIGTH--TIDKLKLPTSFKKVDNIINKTLASNH 62

Query: 86  PDLVIHVGVSDMADKITLECKA----------------AELCQCTDSIDVIKTALDVESL 129
            D+V+ +G +   + IT E  A                 +     D      + L V+++
Sbjct: 63  YDVVLAIGQAGGRNAITPERVAINIDDARIPDNDDFQPIDQAIHLDGAPAYFSNLPVKAM 122

Query: 130 VKEFQTNKANI 140
            +         
Sbjct: 123 TQSIINQGLPG 133

>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A Length = 208

 Score = 86.1 bits (212), Expect = 9e-22
 Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 17/131 (12%)

Query: 26  KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
           KVL+TGF PF    INP+      L       + ++    + V +      +    ++  
Sbjct: 2   KVLVTGFEPFGGEKINPTERIAKDLDGI-KIGDAQVFGRVLPVVFGKAKEVLEKTLEEIK 60

Query: 86  PDLVIHVGVSDMADKITLECKA----------------AELCQCTDSIDVIKTALDVESL 129
           PD+ IHVG++     I++E  A                 +      +     + L ++ +
Sbjct: 61  PDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPGAPTAYFSTLPIKKI 120

Query: 130 VKEFQTNKANI 140
           +K+        
Sbjct: 121 MKKLHERGIPA 131

>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1 Length = 206

 Score = 85.7 bits (211), Expect = 1e-21
 Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 20/131 (15%)

Query: 26  KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
           K+L+TGF PF     NP+ + V  L +R      E+V E + VS+      +  +     
Sbjct: 2   KILLTGFEPFGGDDKNPTMDIVEALSER----IPEVVGEILPVSFKRAREKLLKVLDDVR 57

Query: 86  PDLVIHVGVSDMADKITLECKA----------------AELCQCTDSIDVIKTALDVESL 129
           PD+ I++G++     I++E  A                 +              +    +
Sbjct: 58  PDITINLGLAPGRTHISVERVAVNMIDARIPDNDGEQPKDEPIVEGGPAAYFATIPTREI 117

Query: 130 VKEFQTNKANI 140
           V+E + N    
Sbjct: 118 VEEMKKNGIPA 128

>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1 Length = 220

 Score = 85.3 bits (210), Expect = 2e-21
 Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 17/131 (12%)

Query: 26  KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
           KVLITGF PF   + NP+ +       +    N  +    + VS     + +    ++  
Sbjct: 3   KVLITGFEPFGGDSKNPTEQIAKYFDRK-QIGNAMVYGRVLPVSVKRATIELKRYLEEIK 61

Query: 86  PDLVIHVGVSDMADKITLECKA----------------AELCQCTDSIDVIKTALDVESL 129
           P++VI++G++     IT+E  A                 +     D+       L V ++
Sbjct: 62  PEIVINLGLAPTYSNITVERIAVNIIDARIPDNDGYQPIDEKIEEDAPLAYMATLPVRAI 121

Query: 130 VKEFQTNKANI 140
            K  + N    
Sbjct: 122 TKTLRDNGIPA 132

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 7e-05
 Identities = 28/188 (14%), Positives = 57/188 (30%), Gaps = 53/188 (28%)

Query: 5   VELDTDTRGET-SNALDVTASFKVLITGFG--PFKTHTINPSWEAVSLLPDRI---PNT- 57
           + LD  +   T      +    K L       P +  T NP    +S++ + I     T 
Sbjct: 289 ISLDHHSMTLTPDEVKSLLL--KYLDCRPQDLPREVLTTNP--RRLSIIAESIRDGLATW 344

Query: 58  ------NIEIVKEQIQVSYN----------YV-------DVTVPA-----LWKKYNPDLV 89
                 N + +   I+ S N          +           +P      +W       V
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 90  IHVGVSDMADKITLECKAAE------------LCQCTDSIDVIKTALDVESLVKEFQTNK 137
           + V V+ +     +E +  E              +  +   + ++ +D  ++ K F ++ 
Sbjct: 405 MVV-VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463

Query: 138 ANINQVLD 145
                 LD
Sbjct: 464 LIPPY-LD 470

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	156
4hps_A	228	Pyrrolidone-carboxylate peptidase; structural geno	100.0
4gxh_A	216	Pyrrolidone-carboxylate peptidase; structural geno	100.0
3ro0_A	223	Pyrrolidone-carboxylate peptidase; hydrolase-hydro	100.0
3lac_A	215	Pyrrolidone-carboxylate peptidase; alpha beta clas	100.0
3giu_A	215	Pyrrolidone-carboxylate peptidase; IDP00836, hydro	100.0
1x10_A	208	Pyrrolidone-carboxylate peptidase; stability of pr	100.0
1a2z_A	220	Pyrrolidone carboxyl peptidase; N-pyroglutamate hy	100.0
1iu8_A	206	Pyrrolidone-carboxylate peptidase; hydrolase, thio	100.0
2ebj_A	192	Pyrrolidone carboxyl peptidase; TTHA08 degradation	100.0
3s2u_A	365	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape	84.43

>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A

Probab=100.00  E-value=4.7e-43  Score=280.34  Aligned_cols=131  Identities=27%  Similarity=0.372  Sum_probs=124.5

Q ss_pred             CCceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCee
Q psy4808          22 TASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKI  101 (156)
Q Consensus        22 ~~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i  101 (156)
                      ..+++|||||||||++++.||||+++++|++..+ .+++|++.+|||+|.++.+.++++|++++||+|||+|++++++.|
T Consensus        21 ~~mk~VLvTGF~PF~g~~~NPS~~~v~~L~~~~i-~~~~i~~~~lPv~y~~~~~~l~~~i~~~~Pd~VihvG~aggr~~i   99 (228)
T 4hps_A           21 QSMKTILVTAFDPFGGEAINPSWEAIKPLQGSQV-FGANIEICQIPCIFDTSLEHLYAAVDKYQPELVISVGQAGGRTNI   99 (228)
T ss_dssp             CCCEEEEEEEECCCTTCSCCHHHHHHGGGTTCEE-TTEEEEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEECTTCSSE
T ss_pred             CCCCEEEEEeccCCCCCCCChHHHHHHHhcCcCC-CCcEEEEEEcceEeHHHHHHHHHHHHhhCCCEEEEeccCCCCceE
Confidence            3467999999999999999999999999999766 679999999999999999999999999999999999999999999


Q ss_pred             eEeeeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808         102 TLECKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR  156 (156)
Q Consensus       102 ~lE~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~  156 (156)
                      +|||+|+|    ++||++            ||+.|+|+||+++|+++|++.  |+|+++|+|||+| |||.
T Consensus       100 ~lEr~A~N~~d~~~pDn~G~~P~~~~i~~~Gp~a~~stLpvk~~v~~l~~~--Gipa~vS~dAGtY-vCN~  167 (228)
T 4hps_A          100 TVERVAININDARIPDNAGNQPIDTPVIVDGPAAYFSRLPIKTMVNALNTA--GIPASVSQTAGTF-VCNH  167 (228)
T ss_dssp             EEECEEESCEECSSCCTTSCCCEEECSSTTCCSEEECCSCHHHHHHHHHHT--TCCEEEESCCCSS-HHHH
T ss_pred             EEEEEEeccCCCCCCCcCCCCCCCCcCcCCCCceeeeCCCHHHHHHHHHHc--CCcEEEeCCCCcc-hhHH
Confidence            99999999    789987            689999999999999999999  9999999999999 9994

>4gxh_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 2.70A {Xenorhabdus bovienii}

Probab=100.00  E-value=3.8e-43  Score=279.07  Aligned_cols=129  Identities=28%  Similarity=0.374  Sum_probs=122.8

Q ss_pred             ceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeE
Q psy4808          24 SFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITL  103 (156)
Q Consensus        24 ~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~l  103 (156)
                      +|||||||||||++++.||||+++++|++..+ .+++|++.+|||+|+.+.+.++++|++++||+|||+|+++++..|++
T Consensus         2 MktVLvTGF~PF~~~~~NPS~~~v~~L~~~~~-~~~~i~~~~lPv~~~~~~~~l~~~i~~~~Pd~vi~~G~a~gr~~i~~   80 (216)
T 4gxh_A            2 MKTILVTAFDPFGGEAINPSWEAIKPLQGSQV-FGANIEICQIPCIFDTSLEHLYAAVDKYQPELVISVGQAGGRTNITV   80 (216)
T ss_dssp             -CEEEEEEECCCTTSSSCHHHHHHGGGTTCEE-TTEEEEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEECTTCSSEEE
T ss_pred             CCEEEEeeccCCCCCCCChhHHHHHhhhcccC-CCceEEEEecCccHHHHHHHHHHHHHhhCCCEEEEeccCCCCCccee
Confidence            56899999999999999999999999998766 68999999999999999999999999999999999999999999999


Q ss_pred             eeeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808         104 ECKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR  156 (156)
Q Consensus       104 E~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~  156 (156)
                      |++|+|    ++||++            ||+.|+|+||+++|++++++.  |+|+.+|+|||+| |||.
T Consensus        81 Er~A~N~~~~r~pDn~G~~p~~~~i~~~gp~~~~t~Lpv~~iv~~l~~~--gipa~vS~dAG~y-lCN~  146 (216)
T 4gxh_A           81 ERVAININDARIPDNAGNQPIDTPVIVDGPAAYFSRLPIKTMVNALNTA--GIPASVSQTAGTF-VCNH  146 (216)
T ss_dssp             ECEEESCBCCSSCCTTSCCCCSBCSSTTCCSEEECCSCHHHHHHHHHHT--TCCEEEESCCCSS-HHHH
T ss_pred             EEEEcccCcccCCccCCCCCCCCcccCCCchheecCCCHHHHHHHHHHC--CCCEEEeCCCccc-HHHH
Confidence            999999    789887            689999999999999999999  9999999999999 9994

>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A

Probab=100.00  E-value=6.2e-43  Score=278.91  Aligned_cols=129  Identities=31%  Similarity=0.433  Sum_probs=121.5

Q ss_pred             ceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeE
Q psy4808          24 SFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITL  103 (156)
Q Consensus        24 ~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~l  103 (156)
                      +|+|||||||||++++.||||+++++|++. +++.++|++.+|||+|.++.+.++++|++++||+|||+|++++++.|+|
T Consensus         2 m~~VLvTGF~PF~~~~~NPS~~~v~~L~~~-i~~~~~i~~~~lPv~y~~~~~~l~~~i~~~~Pd~VihvG~aggr~~i~l   80 (223)
T 3ro0_A            2 EKKVLLTGFDPFGGETVNPSWEAVKRLNGA-AEGPASIVSEQVPTVFYKSLAVLREAMKKHQPDIIICVGQAGGRMQITP   80 (223)
T ss_dssp             CEEEEEEEECCCTTCSCCHHHHHHHHTTTC-EETTEEEEEEEECSCTTHHHHHHHHHHHHHCCSEEEEEEECTTCCSBEE
T ss_pred             CCEEEEEeCCCCCCCCCChHHHHHHHhccc-cCCCcEEEEEEeeeEehhHHHHHHHHHHHhCCCEEEEeccCCCCceEEE
Confidence            679999999999999999999999999997 4234599999999999999999999999999999999999999999999


Q ss_pred             eeeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808         104 ECKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR  156 (156)
Q Consensus       104 E~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~  156 (156)
                      ||+|+|    ++||++            ||..|+|+||+++|+++|++.  |+|+++|+|||+| |||.
T Consensus        81 Er~A~N~~d~ripDn~G~~P~d~~i~~~Gp~a~~stLpv~~~v~~l~~~--gipa~vS~dAG~y-vCN~  146 (223)
T 3ro0_A           81 ERVAINLNEARIPDNEGNQPVGEDISQGGPAAYWTGLPIKRIVEEIKKE--GIPAAVSYTAGTF-VCNH  146 (223)
T ss_dssp             BSEEESCBCCSSCCTTSCCCCSBCSSTTSCSEEECCSCHHHHHHHHHHT--TCCBCCBSCCCSS-HHHH
T ss_pred             EEEEecCCCCCCCCCCCCCCCCCCCcCCCCceeecCCCHHHHHHHHHHC--CCCEEEeCCCCcc-cchH
Confidence            999999    679887            689999999999999999999  9999999999999 9994

>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis}

Probab=100.00  E-value=9.7e-43  Score=276.54  Aligned_cols=129  Identities=23%  Similarity=0.412  Sum_probs=121.0

Q ss_pred             ceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeE
Q psy4808          24 SFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITL  103 (156)
Q Consensus        24 ~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~l  103 (156)
                      +++|||||||||++++.||||+++++|++. +++.++|++.+|||+|.++.+.++++|++++||+|||+|++++++.|+|
T Consensus         1 m~~VLvTGF~PF~~~~~NPS~~~v~~L~~~-i~~~~~i~~~~lPv~y~~~~~~l~~~~~~~~Pd~VihvG~aggr~~i~l   79 (215)
T 3lac_A            1 MKTVLLTGFDPFGGESINPAWEVAKSLHEK-TIGEYKIISKQVPTVFHKSISVLKEYIEELAPEFIICIGQAGGRPDITI   79 (215)
T ss_dssp             CEEEEEEEECCCTTCSCCHHHHHHHTTTTC-EETTEEEEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEECTTCSSEEE
T ss_pred             CCEEEEEecCCCCCCCCChHHHHHHHhccc-cCCCcEEEEEEEeeEhHHHHHHHHHHHHhhCCCeEEEeccCCCCceEEE
Confidence            468999999999999999999999999994 4234599999999999999999999999999999999999999999999


Q ss_pred             eeeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808         104 ECKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR  156 (156)
Q Consensus       104 E~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~  156 (156)
                      ||+|+|    ++||++            ||+.|+|+||+++|++++++.  |+++++|+|||+| |||.
T Consensus        80 Er~A~N~~d~~~pDn~G~~P~~~~i~~~Gp~~~~s~Lpv~~~v~~l~~~--gipa~vS~dAG~y-vCN~  145 (215)
T 3lac_A           80 ERVAINIDDARIADNEGNQPVDVPVVEEGPAAYWSTLPMKAIVKKLQEE--GIPASVSQTAGTF-VCNH  145 (215)
T ss_dssp             ECEEESCBCCSSCCTTSCCCSSBCSSTTSCSEEECCSCHHHHHHHHHHT--TCCEEEESCCCSS-HHHH
T ss_pred             EEEEeccCCCcCCCcCCCCCCCCcCcCCCCceeecCCCHHHHHHHHHhC--CCcEEEcCCCCcc-ccHH
Confidence            999999    678887            689999999999999999999  9999999999999 9994

>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0

Probab=100.00  E-value=6.3e-43  Score=277.62  Aligned_cols=129  Identities=27%  Similarity=0.409  Sum_probs=122.1

Q ss_pred             CceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeee
Q psy4808          23 ASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKIT  102 (156)
Q Consensus        23 ~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~  102 (156)
                      +.|+|||||||||++++.||||+++++|++. + .+++|++++|||+|.++.+.++++|++++||+|||+|++++++.|+
T Consensus         2 ~~m~VLvTGF~PF~~~~~NPS~~~v~~L~~~-i-~~~~i~~~~lPv~~~~~~~~l~~~i~~~~Pd~Vi~vG~a~gr~~i~   79 (215)
T 3giu_A            2 NAMHILVTGFAPFDNQNINPSWEAVTQLEDI-I-GTHTIDKLKLPTSFKKVDNIINKTLASNHYDVVLAIGQAGGRNAIT   79 (215)
T ss_dssp             --CEEEEEEECCCTTCSCCHHHHHHHHSCSE-E-TTEEEEEEEECSCHHHHHHHHHHHHHHSCCSEEEEEEECTTCCSBE
T ss_pred             CCcEEEEEecCCCCCCCCChHHHHHHHhccc-c-CCcEEEEEEeceehHhHHHHHHHHHHHhCCCEEEEeccCCCCceEE
Confidence            3679999999999999999999999999997 4 7899999999999999999999999999999999999999999999


Q ss_pred             Eeeeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808         103 LECKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR  156 (156)
Q Consensus       103 lE~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~  156 (156)
                      +||+|+|    ++||++            ||+.|+|+||+++|+++|++.  |+|+++|+|||+| |||+
T Consensus        80 lEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~stLpv~~iv~~l~~~--gipa~vS~dAG~y-vCN~  146 (215)
T 3giu_A           80 PERVAINIDDARIPDNDDFQPIDQAIHLDGAPAYFSNLPVKAMTQSIINQ--GLPGALSNSAGTF-VCNH  146 (215)
T ss_dssp             EBCEEESCEECSSCCTTSCCCEEECSCTTSCSEEECCSCHHHHHHHHHHT--TCCBCCBSCCCSS-HHHH
T ss_pred             EEEEEeccCCCCCCCCCCCCCCCCcccCCCccccccCCCHHHHHHHHHHc--CCCEEEeCCCCcc-ccHH
Confidence            9999999    679987            689999999999999999999  9999999999999 9994

>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A

Probab=100.00  E-value=2.2e-42  Score=273.23  Aligned_cols=128  Identities=20%  Similarity=0.316  Sum_probs=122.4

Q ss_pred             eEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEe
Q psy4808          25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLE  104 (156)
Q Consensus        25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE  104 (156)
                      |+|||||||||++++.||||+++++|++..+ .+++|++.+|||+|.++.+.++++|++++||+|||+|++++++.|++|
T Consensus         1 m~VLvTGF~PF~~~~~NPS~~~v~~L~~~~~-~~~~i~~~~lPv~~~~~~~~l~~~~~~~~pd~vi~vG~a~gr~~i~iE   79 (208)
T 1x10_A            1 MKVLVTGFEPFGGEKINPTERIAKDLDGIKI-GDAQVFGRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIE   79 (208)
T ss_dssp             CEEEEEEECCCTTCSCCHHHHHHHHHTTCEE-TTEEEEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEECTTCCSEEEE
T ss_pred             CEEEEEeecCCCCCCCChHHHHHHHhhccCC-CCeEEEEEEEeeEHHHHHHHHHHHHHHhCCCEEEEecCCCCCceEEeE
Confidence            4699999999999999999999999999866 789999999999999999999999999999999999999999999999


Q ss_pred             eeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808         105 CKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR  156 (156)
Q Consensus       105 ~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~  156 (156)
                      ++|+|    ++||++            ||+.|+|+||+++|++++++.  |+++.+|+|||+| |||.
T Consensus        80 r~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~ttlpi~~iv~~l~~~--gi~~~vS~~AG~y-lCN~  144 (208)
T 1x10_A           80 RIAVNAIDARIPDNEGKKIEDEPIVPGAPTAYFSTLPIKKIMKKLHER--GIPAYISNSAGLY-LSNY  144 (208)
T ss_dssp             CEEESCBCCSSCCTTSCCCCSBCSSTTSCSEEECCSCHHHHHHHHHHT--TCCEEEESCCCSS-HHHH
T ss_pred             EEEEcCCCcccCCCCCCCCCCCceeCCCCceeEcCCCHHHHHHHHHhC--CCCEEEecCCCcc-hhhH
Confidence            99999    679987            688999999999999999999  9999999999999 9994

>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1

Probab=100.00  E-value=2.4e-42  Score=275.06  Aligned_cols=128  Identities=23%  Similarity=0.351  Sum_probs=122.6

Q ss_pred             eEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEe
Q psy4808          25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLE  104 (156)
Q Consensus        25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE  104 (156)
                      |+|||||||||++++.||||+++++|++..+ .+++|++.+|||+|..+.+.++++|++++||+|||+|++++++.|++|
T Consensus         2 k~VLvTGF~PF~~~~~NPS~~~v~~L~~~~~-~~~~i~~~~lPv~~~~~~~~l~~~i~~~~Pd~Vi~vG~aggr~~i~lE   80 (220)
T 1a2z_A            2 KKVLITGFEPFGGDSKNPTEQIAKYFDRKQI-GNAMVYGRVLPVSVKRATIELKRYLEEIKPEIVINLGLAPTYSNITVE   80 (220)
T ss_dssp             EEEEEEEECCCTTCSCCHHHHHHHHHTTCEE-TTEEEEEEEECSCHHHHHHHHHHHHHHHCCSEEEEEEECTTCSSEEEE
T ss_pred             CEEEEeeccCCCCCCCCcHHHHHHHhhcccC-CCeEEEEEEEEeEHHHHHHHHHHHHHHhCCCEEEEecCCCCCceEEEE
Confidence            5799999999999999999999999999866 789999999999999999999999999999999999999999999999


Q ss_pred             eeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808         105 CKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR  156 (156)
Q Consensus       105 ~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~  156 (156)
                      |+|+|    ++||++            ||+.|+|+||+++|++++++.  |+++.+|+|||+| |||.
T Consensus        81 r~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~ttLpi~~iv~~l~~~--gip~~vS~~AG~y-lCN~  145 (220)
T 1a2z_A           81 RIAVNIIDARIPDNDGYQPIDEKIEEDAPLAYMATLPVRAITKTLRDN--GIPATISYSAGTY-LCNY  145 (220)
T ss_dssp             CEEESCBCCSSCCTTSCCCSSBCSCTTSCSEEECCSCHHHHHHHHHHT--TCCEEEESCCCSS-HHHH
T ss_pred             EEEccCCCCCcCCCCCCCCCCCCccCCCCceeEcCCCHHHHHHHHHHC--CCCEEEeCCCCcc-hhhH
Confidence            99999    679987            688999999999999999999  9999999999999 9994

>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1

Probab=100.00  E-value=1.5e-41  Score=268.17  Aligned_cols=125  Identities=26%  Similarity=0.426  Sum_probs=119.2

Q ss_pred             eEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEe
Q psy4808          25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLE  104 (156)
Q Consensus        25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE  104 (156)
                      |+|||||||||++++.||||+++++|++. +   ++|++.+|||+|.++.+.++++|++++||+|||+|++++++.|++|
T Consensus         1 m~VLvTGF~PF~~~~~NPS~~~v~~L~~~-i---~~i~~~~lPv~~~~~~~~l~~~~~~~~Pd~vi~vG~a~gr~~i~~E   76 (206)
T 1iu8_A            1 MKILLTGFEPFGGDDKNPTMDIVEALSER-I---PEVVGEILPVSFKRAREKLLKVLDDVRPDITINLGLAPGRTHISVE   76 (206)
T ss_dssp             CCEEEEEECCCTTCSCCHHHHHHHHHHHH-C---TTEEEEEECSCHHHHHHHHHHHHHHHCCSEEEEEEECTTCSSEEEE
T ss_pred             CEEEEEeecCCCCCCCCcHHHHHHHhccc-e---eEEEEEEEEeEHHHHHHHHHHHHHHhCCCEEEEcccCCCCceEEEE
Confidence            46999999999999999999999999987 3   7789999999999999999999999999999999999999999999


Q ss_pred             eeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808         105 CKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR  156 (156)
Q Consensus       105 ~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~  156 (156)
                      ++|+|    ++||++            ||..|+|+||+++|++++++.  |+++.+|+|||+| |||.
T Consensus        77 r~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~t~Lpi~~iv~~l~~~--gip~~vS~~AG~y-lCN~  141 (206)
T 1iu8_A           77 RVAVNMIDARIPDNDGEQPKDEPIVEGGPAAYFATIPTREIVEEMKKN--GIPAVLSYTAGTY-LCNF  141 (206)
T ss_dssp             CEEESCEECSSCCTTSCCCEEECSSTTCCSEEECCSCHHHHHHHHHHT--TCCEEEESCCCSS-HHHH
T ss_pred             EEEecCCCCccCCCCCCCCCCCceeCCCCceeEcCCCHHHHHHHHHhC--CCCEEEeCCCCcc-HhhH
Confidence            99999    689987            688999999999999999999  9999999999999 9994

>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and peptides, structural genomics; 1.90A {Thermus thermophilus}

Probab=100.00  E-value=4.2e-41  Score=263.08  Aligned_cols=125  Identities=21%  Similarity=0.303  Sum_probs=119.9

Q ss_pred             EEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEee
Q psy4808          26 KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLEC  105 (156)
Q Consensus        26 ~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE~  105 (156)
                      +|||||||||++++.||||+++++|++. + .+++|++.+|||+ +.+.+.++++|++++||+|||+|++++++.|++|+
T Consensus         1 ~VLvTGF~PF~~~~~NPS~~~v~~L~~~-i-~~~~i~~~~lPv~-~~~~~~l~~~~~~~~pd~vi~~G~a~~r~~i~~Er   77 (192)
T 2ebj_A            1 MILVTGFEPFGSLEHNPSQALLDLLPSE-V-DGKPLRKAVLPVD-AEALGEALEDLHREGPKAVLHLGLAEDRPVLTLER   77 (192)
T ss_dssp             CEEEEEECCCTTCSCCHHHHGGGGSCSE-E-TTEEEEEEEECSC-HHHHHHHHHHHHTTCCSEEEEEEECTTCSSEEEEC
T ss_pred             CEEEEeecCCCCCCCChHHHHHHHhhcc-c-CCcEEEEEEeccc-ccHHHHHHHHHHHhCCCEEEEeccCCCCceEEeEE
Confidence            5999999999999999999999999998 5 7899999999999 99999999999999999999999999999999999


Q ss_pred             eecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808         106 KAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR  156 (156)
Q Consensus       106 ~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~  156 (156)
                      +|+|    ++||++            ||..|+|+||+++|++++++.  |+++.+|+|||+| |||.
T Consensus        78 ~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~t~lp~~~iv~~l~~~--g~p~~vS~~AG~y-lCN~  141 (192)
T 2ebj_A           78 LAVNLLDFPRPDNRGRVLEDLPIVPGGPLALPARFPVKPVLARWREA--GIPGRPSLSAGSY-LCNQ  141 (192)
T ss_dssp             EEESCBCCSSCCTTCCCCCSBCSSTTSCSEEECBSCHHHHHHHHHHT--TCCEEEESCCCSS-HHHH
T ss_pred             EEEcCCCccCCCCCCCCCCCCceeCCCCceeEcCCCHHHHHHHHHHC--CCCEEEeCCCCcc-HHHH
Confidence            9999    679987            688999999999999999999  9999999999999 9994

>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}

Probab=84.43  E-value=0.47  Score=38.63  Aligned_cols=30  Identities=23%  Similarity=0.212  Sum_probs=21.9

Q ss_pred             CceEEEEEeecCCCCCCCCchHHHHHhCCCCC
Q psy4808          23 ASFKVLITGFGPFKTHTINPSWEAVSLLPDRI   54 (156)
Q Consensus        23 ~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~   54 (156)
                      |+++|+|+|-|. +|| .+|.-.++++|.+..
T Consensus         1 M~~~i~i~~GGT-gGH-i~palala~~L~~~g   30 (365)
T 3s2u_A            1 MKGNVLIMAGGT-GGH-VFPALACAREFQARG   30 (365)
T ss_dssp             --CEEEEECCSS-HHH-HHHHHHHHHHHHHTT
T ss_pred             CCCcEEEEcCCC-HHH-HHHHHHHHHHHHhCC
Confidence            567899999875 343 589999999997653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	156
d1auga_	210	c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro	1e-25
d1a2za_	220	c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro	4e-25
d1iofa_	208	c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro	1e-23
d1iu8a_	206	c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro	6e-23

>d1auga_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Bacillus amyloliquefaciens [TaxId: 1390]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

 Score = 95.1 bits (236), Expect = 1e-25
 Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 17/127 (13%)

Query: 26  KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
           KVL+TGF PF   T+NPSWEAV  L          IV EQ+   +      +    KK+ 
Sbjct: 4   KVLLTGFDPFGGETVNPSWEAVKRLNGAA-EGPASIVSEQVPTVFYKSLAVLREAIKKHQ 62

Query: 86  PDLVIHVGVSDMADKITLECKA----------------AELCQCTDSIDVIKTALDVESL 129
           PD++I VG +    +IT E  A                              T L ++ +
Sbjct: 63  PDIIICVGQAGGRMQITPERVAINLNEARIPDNEGNQPVGEDISQGGPAAYWTGLPIKRI 122

Query: 130 VKEFQTN 136
           V+E +  
Sbjct: 123 VEEIKKE 129

>d1a2za_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 220

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 94.0 bits (233), Expect = 4e-25
 Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 17/131 (12%)

Query: 26  KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
           KVLITGF PF   + NP+ +       +    N  +    + VS     + +    ++  
Sbjct: 3   KVLITGFEPFGGDSKNPTEQIAKYFDRKQI-GNAMVYGRVLPVSVKRATIELKRYLEEIK 61

Query: 86  PDLVIHVGVSDMADKITLECKAAELCQCT----------------DSIDVIKTALDVESL 129
           P++VI++G++     IT+E  A  +                    D+       L V ++
Sbjct: 62  PEIVINLGLAPTYSNITVERIAVNIIDARIPDNDGYQPIDEKIEEDAPLAYMATLPVRAI 121

Query: 130 VKEFQTNKANI 140
            K  + N    
Sbjct: 122 TKTLRDNGIPA 132

>d1iofa_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 208

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 89.7 bits (222), Expect = 1e-23
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 17/127 (13%)

Query: 26  KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
           KVL+TGF PF    INP+      L       + ++    + V +      +    ++  
Sbjct: 2   KVLVTGFEPFGGEKINPTERIAKDLDGIKI-GDAQVFGRVLPVVFGKAKEVLEKTLEEIK 60

Query: 86  PDLVIHVGVSDMADKITLECKA----------AELCQCTDS------IDVIKTALDVESL 129
           PD+ IHVG++     I++E  A           E  +  D            + L ++ +
Sbjct: 61  PDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPGAPTAYFSTLPIKKI 120

Query: 130 VKEFQTN 136
           +K+    
Sbjct: 121 MKKLHER 127

>d1iu8a_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 206

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 87.8 bits (217), Expect = 6e-23
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 26  KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
           K+L+TGF PF     NP+ + V  L +RIP    E+V E + VS+      +  +     
Sbjct: 2   KILLTGFEPFGGDDKNPTMDIVEALSERIP----EVVGEILPVSFKRAREKLLKVLDDVR 57

Query: 86  PDLVIHVGVSDMADKITLECKA 107
           PD+ I++G++     I++E  A
Sbjct: 58  PDITINLGLAPGRTHISVERVA 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	156
d1a2za_	220	Pyrrolidone carboxyl peptidase (pyroglutamate amin	100.0
d1iofa_	208	Pyrrolidone carboxyl peptidase (pyroglutamate amin	100.0
d1auga_	210	Pyrrolidone carboxyl peptidase (pyroglutamate amin	100.0
d1iu8a_	206	Pyrrolidone carboxyl peptidase (pyroglutamate amin	100.0
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	92.22
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	90.04
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	86.61
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	81.57

>d1a2za_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=5.5e-42  Score=271.14  Aligned_cols=129  Identities=23%  Similarity=0.345  Sum_probs=123.0

Q ss_pred             ceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeE
Q psy4808          24 SFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITL  103 (156)
Q Consensus        24 ~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~l  103 (156)
                      ++||||||||||++++.||||+++++|++..+ .+++|+..+|||+|+++.+.+.++|++++||+|||+|++++++.|+|
T Consensus         1 MkkILvTGF~PF~~~~~NPS~~iv~~L~~~~~-~~~~i~~~~LPV~~~~~~~~l~~~~~~~~pd~vi~~G~a~~~~~i~l   79 (220)
T d1a2za_           1 MKKVLITGFEPFGGDSKNPTEQIAKYFDRKQI-GNAMVYGRVLPVSVKRATIELKRYLEEIKPEIVINLGLAPTYSNITV   79 (220)
T ss_dssp             CEEEEEEEECCCTTCSCCHHHHHHHHHTTCEE-TTEEEEEEEECSCHHHHHHHHHHHHHHHCCSEEEEEEECTTCSSEEE
T ss_pred             CCEEEEEecCCCCCCCCChHHHHHHHhcccCC-CCceEEEEEcceeHHHHHHHHHHHHHhCCceEEEEEeecCCCceeEE
Confidence            46899999999999999999999999998776 78999999999999999999999999999999999999999999999


Q ss_pred             eeeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808         104 ECKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR  156 (156)
Q Consensus       104 E~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~  156 (156)
                      |++|+|    ++||++            ||..|+|+||++++++++++.  |+|+++|+|||+| |||+
T Consensus        80 E~~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~ttlp~~~i~~~l~~~--gi~~~iS~dAG~Y-lCN~  145 (220)
T d1a2za_          80 ERIAVNIIDARIPDNDGYQPIDEKIEEDAPLAYMATLPVRAITKTLRDN--GIPATISYSAGTY-LCNY  145 (220)
T ss_dssp             ECEEESCBCCSSCCTTSCCCSSBCSCTTSCSEEECCSCHHHHHHHHHHT--TCCEEEESCCCSS-HHHH
T ss_pred             EEEEEeCCCCccccccCCccCCCCccCCCCceeecCCCHHHHHHHHHhc--CCCeEEcCCHHHh-hhhH
Confidence            999999    668886            689999999999999999999  9999999999999 9994

>d1iofa_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=8.9e-42  Score=267.72  Aligned_cols=128  Identities=21%  Similarity=0.345  Sum_probs=122.1

Q ss_pred             eEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEe
Q psy4808          25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLE  104 (156)
Q Consensus        25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE  104 (156)
                      |||||||||||+++++||||.++++|++..+ .+++|++.+|||+|+++.+.+.++|++++||+|||+|++++++.|+||
T Consensus         1 mkILvTGF~pF~~~~~NpS~~vv~~L~~~~~-~~~~i~~~~LpV~~~~~~~~l~~l~~~~~pd~vih~G~~~~~~~i~lE   79 (208)
T d1iofa_           1 MKVLVTGFEPFGGEKINPTERIAKDLDGIKI-GDAQVFGRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIE   79 (208)
T ss_dssp             CEEEEEEECCCSSCSCCHHHHHHHHHTTCEE-TTEEEEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEECTTCCSEEEE
T ss_pred             CEEEEEeeCCCCCCCCChHHHHHHhcccCCC-CCceEEEEecceeHHHHHHHHHHHHHhCCCcEEEEEeecCCcceEEeE
Confidence            5899999999999999999999999999876 789999999999999999999999999999999999999999999999


Q ss_pred             eeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808         105 CKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR  156 (156)
Q Consensus       105 ~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~  156 (156)
                      ++|+|    .+||++            ||+.|+|++|++++++++++.  |+++.+|+|||+| |||.
T Consensus        80 ~~A~N~~~~~~pD~~G~~p~~~~i~~~g~~~~~t~lp~~~l~~~l~~~--g~~v~iS~daG~Y-lCN~  144 (208)
T d1iofa_          80 RIAVNAIDARIPDNEGKKIEDEPIVPGAPTAYFSTLPIKKIMKKLHER--GIPAYISNSAGLY-LCNY  144 (208)
T ss_dssp             CEEESCBCCSSCCTTSCCCCSBCSSTTSCSEEECCSCHHHHHHHHHHT--TCCEEEESCCCSS-HHHH
T ss_pred             eEEeccCCCccCCccCCcCCCCCccCCCcceeecCCCHHHHHHHHHhc--CCCeeecCchhhh-hhhH
Confidence            99999    677776            689999999999999999999  9999999999999 9994

>d1auga_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=100.00  E-value=4.6e-41  Score=263.98  Aligned_cols=130  Identities=31%  Similarity=0.420  Sum_probs=123.4

Q ss_pred             CceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeee
Q psy4808          23 ASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKIT  102 (156)
Q Consensus        23 ~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~  102 (156)
                      |.|+|||||||||++++.||||+++++|++... .+++|+..+|||+|+.+.+.+.+++++++||+|||+|++++++.|+
T Consensus         1 m~KrILvTGF~PF~~~~~NpS~~vv~~L~~~~~-~~~~i~~~~lpV~~~~~~~~~~~~~~~~~p~~vih~G~~~~~~~i~   79 (210)
T d1auga_           1 MEKKVLLTGFDPFGGETVNPSWEAVKRLNGAAE-GPASIVSEQVPTVFYKSLAVLREAIKKHQPDIIICVGQAGGRMQIT   79 (210)
T ss_dssp             CCEEEEEEEECCCSSCSCCHHHHHHHTTTTCEE-TTEEEEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEECTTCSSBE
T ss_pred             CCcEEEEEccCCCCCCCcChHHHHHHHhccccC-CCcEEEEEEccccHHHHHHHHHHHHHhCCCcEEEEEEecCCcceEE
Confidence            578999999999999999999999999998776 6789999999999999999999999999999999999999999999


Q ss_pred             Eeeeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808         103 LECKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR  156 (156)
Q Consensus       103 lE~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~  156 (156)
                      ||++|+|    ++||++            ||+.|+|++|+++++++++..  |+++.+|+|||+| |||.
T Consensus        80 lE~~A~N~~~~~~pDn~G~~p~~~~i~~~g~~~~~t~lp~~~l~~~l~~~--g~~~~~S~daG~Y-lCN~  146 (210)
T d1auga_          80 PERVAINLNEARIPDNEGNQPVGEDISQGGPAAYWTGLPIKRIVEEIKKE--GIPAAVSYTAGTF-VCNH  146 (210)
T ss_dssp             EBSEEESCBCCSSCCTTSCCCCSBCSSTTSCSEEECCSCHHHHHHHHHHT--TCCBCCBSCCCSS-HHHH
T ss_pred             eeeEeeccCcccccccCCCCCCCCcccCCCCceeEcCCCHHHHHHHHHhc--CCCeEEcCCCCcc-chhh
Confidence            9999999    568886            688999999999999999999  9999999999999 9994

>d1iu8a_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=5e-40  Score=257.44  Aligned_cols=125  Identities=27%  Similarity=0.444  Sum_probs=117.9

Q ss_pred             eEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEe
Q psy4808          25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLE  104 (156)
Q Consensus        25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE  104 (156)
                      |||||||||||+++++||||.+++.|++..    .+|.+.+|||+|+++.+.+.++|++++||+|||+|++++++.|+||
T Consensus         1 mkILvTGF~pF~~~~~NpS~~i~~~L~~~~----~~i~~~~LpV~~~~~~~~~~~~~~~~~pd~vih~G~~~~~~~i~lE   76 (206)
T d1iu8a_           1 MKILLTGFEPFGGDDKNPTMDIVEALSERI----PEVVGEILPVSFKRAREKLLKVLDDVRPDITINLGLAPGRTHISVE   76 (206)
T ss_dssp             CCEEEEEECCCTTCSCCHHHHHHHHHHHHC----TTEEEEEECSCHHHHHHHHHHHHHHHCCSEEEEEEECTTCSSEEEE
T ss_pred             CEEEEEeeCCCCCCCCChHHHHHHHhhccc----CeEEEEEeeccHHHHHHHHHHHHHhcCCcEEEEEEecCCccceeeE
Confidence            579999999999999999999999998764    3478899999999999999999999999999999999999999999


Q ss_pred             eeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808         105 CKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR  156 (156)
Q Consensus       105 ~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~  156 (156)
                      ++|+|    ++||++            ||..|+|++|+++++++++..  |+++++|+|||+| |||.
T Consensus        77 ~~A~N~~~~~~pD~~G~~p~~~~i~~~g~~~~~ttlp~~~i~~~l~~~--g~~v~~S~daG~Y-lCN~  141 (206)
T d1iu8a_          77 RVAVNMIDARIPDNDGEQPKDEPIVEGGPAAYFATIPTREIVEEMKKN--GIPAVLSYTAGTY-LCNF  141 (206)
T ss_dssp             CEEESCEECSSCCTTSCCCEEECSSTTCCSEEECCSCHHHHHHHHHHT--TCCEEEESCCCSS-HHHH
T ss_pred             EEEEecCCCccccCCCCCCCCCcccCCCccceecCCCHHHHHHHHHhc--CCCeEEcCcHHhh-hhhH
Confidence            99999    678886            689999999999999999999  9999999999999 9994

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=92.22  E-value=0.021  Score=42.10  Aligned_cols=61  Identities=16%  Similarity=0.224  Sum_probs=36.8

Q ss_pred             eEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEE--EeeeecchhhhHHHHHHHHhCCCEEEEEcc
Q psy4808          25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKE--QIQVSYNYVDVTVPALWKKYNPDLVIHVGV   94 (156)
Q Consensus        25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~--~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv   94 (156)
                      |+|||||=.-|-|      ..+++.|.+...  .+.+...  .+..++.. .+.+.+++++.+||+|||++-
T Consensus         1 MKILItG~tGfiG------~~l~~~L~~~g~--~v~~~~~~~~~~~Dl~~-~~~~~~~i~~~~~D~Vih~Aa   63 (298)
T d1n2sa_           1 MNILLFGKTGQVG------WELQRSLAPVGN--LIALDVHSKEFCGDFSN-PKGVAETVRKLRPDVIVNAAA   63 (298)
T ss_dssp             CEEEEECTTSHHH------HHHHHHTTTTSE--EEEECTTCSSSCCCTTC-HHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCCHHH------HHHHHHHHhCCC--EEEEECCCccccCcCCC-HHHHHHHHHHcCCCEEEEecc
Confidence            5799999877755      467788876541  1111000  11112111 245677788889999999874

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=90.04  E-value=0.087  Score=40.17  Aligned_cols=21  Identities=19%  Similarity=0.170  Sum_probs=16.7

Q ss_pred             hHHHHHHHHhCCCEEEEEccc
Q psy4808          75 VTVPALWKKYNPDLVIHVGVS   95 (156)
Q Consensus        75 ~~l~~l~~~~~pd~vih~Gv~   95 (156)
                      +.+.++++..+||+|+|++-.
T Consensus        63 ~~l~~~~~~~~~d~ViHlAa~   83 (338)
T d1udca_          63 ALMTEILHDHAIDTVIHFAGL   83 (338)
T ss_dssp             HHHHHHHHHTTCSEEEECCSC
T ss_pred             HHHHHHHhccCCCEEEECCCc
Confidence            456677778899999999863

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=86.61  E-value=0.43  Score=34.40  Aligned_cols=58  Identities=22%  Similarity=0.368  Sum_probs=38.3

Q ss_pred             eEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchh----hhHHHHHHHHhCCCEEEEEcccC
Q psy4808          25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYV----DVTVPALWKKYNPDLVIHVGVSD   96 (156)
Q Consensus        25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v----~~~l~~l~~~~~pd~vih~Gv~~   96 (156)
                      |+|||||=.-|=|      ..+++.|.+.    +++|..    ++...+    .+.+.++++..+||+|+|++...
T Consensus         2 MKIlItGasGfiG------~~l~~~L~~~----g~~Vi~----~~r~~~D~~d~~~~~~~l~~~~~d~vih~a~~~   63 (281)
T d1vl0a_           2 MKILITGANGQLG------REIQKQLKGK----NVEVIP----TDVQDLDITNVLAVNKFFNEKKPNVVINCAAHT   63 (281)
T ss_dssp             EEEEEESTTSHHH------HHHHHHHTTS----SEEEEE----ECTTTCCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             CEEEEECCCCHHH------HHHHHHHHhC----CCEEEE----eechhccCCCHHHHHHHHHHcCCCEEEeecccc
Confidence            6799999888854      4578888664    344433    222221    14456778888999999987644

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.57  E-value=0.45  Score=36.58  Aligned_cols=20  Identities=30%  Similarity=0.605  Sum_probs=16.3

Q ss_pred             hHHHHHHHHhCCCEEEEEcc
Q psy4808          75 VTVPALWKKYNPDLVIHVGV   94 (156)
Q Consensus        75 ~~l~~l~~~~~pd~vih~Gv   94 (156)
                      +.+.++++..+||+|+|++-
T Consensus        80 ~~l~~~~~~~~~d~ViHlAa   99 (393)
T d1i24a_          80 EFLAESFKSFEPDSVVHFGE   99 (393)
T ss_dssp             HHHHHHHHHHCCSEEEECCS
T ss_pred             HHHHHHHHhhcchheecccc
Confidence            45677778889999999984