Psyllid ID: psy4846

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
MDNAMLRRHPVPPPANFEPLLHAARRQGFELSVGTGKELATSLDAAAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKNALQILIPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRLVRPVIEGFSVSSAGEQGEEKMEEGETRSLYCD
ccccEEEcccccccccHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccEEEEEccccccccccEEEEEEEccEEEEEcccccccEEEEcccccccEEEEcccccccccccEEEEEccEEEEEEEEEccccccccEEEEEEccccccccccccccccccccccccccccccc
ccccEEEEcccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcEccccccccccccccHHcccccHHcccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccEEEcEEEEEEcccEEEEEEcccEEEEEEEEEccccccEEEEcccccEEEcccEEEEEcccEEEEEEEEEEcccccEEEEEEEccccccccccccccccccccccccccccccc
mdnamlrrhpvpppanfeplLHAARRQGFELSVGTGKELATSLDAAAVYFssgmlqqsdfhhyglatpiythftspirRYADIIVHRLLAACIgadatypslldkkasTALCYNLNYRNRQAQYAGRASVALHTHLFFRsrvqdedgyVLYVRKNALQilipksrvqdedgYVLYVRKNALQILipkyglegtlflrcdspsvswtynekeqsqscgsvvfhsfdpvTVQLsldrsnvqHEKLVLRLVRPviegfsvssageqgeekmeegetrslycd
mdnamlrrhpvpppanFEPLLHAARRQGFELSVGTGKELATSLDAAAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKNAlqilipksrvqdedGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRlvrpviegfsvssageqgeekmeegetrslycd
MDNAMLRRHPVPPPANFEPLLHAARRQGFELSVGTGKELATSLDAAAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKNALQILIPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRLVRPVIEGFSVSSAgeqgeekmeegeTRSLYCD
**************************QGFELSVGTGKELATSLDAAAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKNALQILIPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRLVRPVIEGF************************
MDNAMLRRHPVPPPANFEPLLHAARRQGFELS************AAAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKNALQILIPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRL********************************
MDNAMLRRHPVPPPANFEPLLHAARRQGFELSVGTGKELATSLDAAAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKNALQILIPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSW***********GSVVFHSFDPVTVQLSLDRSNVQHEKLVLRLVRPVIEGFSVS*********************
*DNAMLRRHPVPPPANFEPLLHAARRQGFELSVGTGKELATSLDAAAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKNALQILIPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRLVRPV****************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDNAMLRRHPVPPPANFEPLLHAARRQGFELSVGTGKELATSLDAAAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKNALQILIPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRLVRPVIEGFSVSSAGEQGEEKMEEGETRSLYCD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query279 2.2.26 [Sep-21-2011]
Q9Y2L1958 Exosome complex exonuclea yes N/A 0.831 0.242 0.471 8e-66
Q9CSH3958 Exosome complex exonuclea yes N/A 0.824 0.240 0.464 1e-64
Q17632961 Probable exosome complex yes N/A 0.831 0.241 0.406 1e-53
P37202970 Exosome complex exonuclea yes N/A 0.652 0.187 0.381 1e-33
Q8C0S11053 DIS3-like exonuclease 1 O no N/A 0.813 0.215 0.324 7e-33
A0JN801053 DIS3-like exonuclease 1 O no N/A 0.813 0.215 0.320 8e-33
Q5U2P01054 DIS3-like exonuclease 1 O no N/A 0.813 0.215 0.320 2e-32
Q5R5N81054 DIS3-like exonuclease 1 O yes N/A 0.813 0.215 0.317 3e-31
Q8TF461054 DIS3-like exonuclease 1 O no N/A 0.813 0.215 0.313 5e-31
Q081621001 Exosome complex exonuclea yes N/A 0.587 0.163 0.406 8e-31
>sp|Q9Y2L1|RRP44_HUMAN Exosome complex exonuclease RRP44 OS=Homo sapiens GN=DIS3 PE=1 SV=2 Back     alignment and function desciption
 Score =  250 bits (639), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 133/282 (47%), Positives = 170/282 (60%), Gaps = 50/282 (17%)

Query: 2   DNAMLRRHPVPPPANFEPLLHAARRQGFELSVGTGKELATSLDAA--------------- 46
           ++A+LR+HP PPP+N+E L+ AAR +  E+   T K LA SLD A               
Sbjct: 684 EHALLRKHPAPPPSNYEILVKAARSRNLEIKTDTAKSLAESLDQAESPTFPYLNTLLRIL 743

Query: 47  -------AVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATY 99
                  AVYF SGM   +DFHHYGLA+PIYTHFTSPIRRYAD+IVHRLLA  IGAD TY
Sbjct: 744 ATRCMMQAVYFCSGM--DNDFHHYGLASPIYTHFTSPIRRYADVIVHRLLAVAIGADCTY 801

Query: 100 PSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSR-VQDEDGYVLYVRKNALQ 158
           P L DK     +C NLN+R++ AQYA RASVA HT LFF+S+ +  E+ Y+L+VRKN   
Sbjct: 802 PELTDKHKLADICKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVSEEAYILFVRKN--- 858

Query: 159 ILIPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFL-RCDSPSVSWTYNEKEQSQSCG 217
                                A+ +LIPKYGLEGT+F    D P+    Y+++  S    
Sbjct: 859 ---------------------AIVVLIPKYGLEGTVFFEEKDKPNPQLIYDDEIPSLKIE 897

Query: 218 SVVFHSFDPVTVQLSLDRSNVQHEKLVLRLVRPVIEGFSVSS 259
             VFH FD V V++ LD SN+QH+K+ + LV P I G S+ +
Sbjct: 898 DTVFHVFDKVKVKIMLDSSNLQHQKIRMSLVEPQIPGISIPT 939
Putative catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and promoter-upstream transcripts (PROMPTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. The RNA exosome may be involved in Ig class switch recombination (CSR) and/or Ig variable region somatic hypermutation (SHM) by targeting AICDA deamination activity to transcribed dsDNA substrates. In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and specifically degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3' untranslated regions, and in RNA surveillance pathways, preventing translation of aberrant mRNAs. It seems to be involved in degradation of histone mRNA. DIS3 has both 3'-5' exonuclease and endonuclease activities.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: -
>sp|Q9CSH3|RRP44_MOUSE Exosome complex exonuclease RRP44 OS=Mus musculus GN=Dis3 PE=2 SV=4 Back     alignment and function description
>sp|Q17632|RRP44_CAEEL Probable exosome complex exonuclease RRP44 OS=Caenorhabditis elegans GN=dis-3 PE=3 SV=2 Back     alignment and function description
>sp|P37202|DIS3_SCHPO Exosome complex exonuclease dis3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dis3 PE=1 SV=1 Back     alignment and function description
>sp|Q8C0S1|DI3L1_MOUSE DIS3-like exonuclease 1 OS=Mus musculus GN=Dis3l PE=2 SV=2 Back     alignment and function description
>sp|A0JN80|DI3L1_BOVIN DIS3-like exonuclease 1 OS=Bos taurus GN=DIS3L PE=2 SV=2 Back     alignment and function description
>sp|Q5U2P0|DI3L1_RAT DIS3-like exonuclease 1 OS=Rattus norvegicus GN=Dis3l PE=2 SV=2 Back     alignment and function description
>sp|Q5R5N8|DI3L1_PONAB DIS3-like exonuclease 1 OS=Pongo abelii GN=DIS3L PE=2 SV=1 Back     alignment and function description
>sp|Q8TF46|DI3L1_HUMAN DIS3-like exonuclease 1 OS=Homo sapiens GN=DIS3L PE=1 SV=2 Back     alignment and function description
>sp|Q08162|RRP44_YEAST Exosome complex exonuclease DIS3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DIS3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query279
156553452 985 PREDICTED: exosome complex exonuclease R 0.878 0.248 0.575 1e-91
383860552 979 PREDICTED: exosome complex exonuclease R 0.845 0.241 0.586 4e-89
328786997 978 PREDICTED: exosome complex exonuclease R 0.892 0.254 0.548 1e-88
380015637 971 PREDICTED: exosome complex exonuclease R 0.892 0.256 0.552 2e-88
157130204 970 mitotic control protein dis3 [Aedes aegy 0.870 0.250 0.553 3e-88
119113846 967 AGAP005191-PA [Anopheles gambiae str. PE 0.853 0.246 0.570 7e-87
307186828 945 Exosome complex exonuclease RRP44 [Campo 0.824 0.243 0.593 8e-87
332019034 976 Exosome complex exonuclease RRP44 [Acrom 0.824 0.235 0.589 1e-86
340720631 981 PREDICTED: exosome complex exonuclease R 0.824 0.234 0.577 1e-86
170035482 970 mitotic control protein dis3 [Culex quin 0.856 0.246 0.558 2e-86
>gi|156553452|ref|XP_001601829.1| PREDICTED: exosome complex exonuclease RRP44-like [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  342 bits (876), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 172/299 (57%), Positives = 210/299 (70%), Gaps = 54/299 (18%)

Query: 4   AMLRRHPVPPPANFEPLLHAARRQGFELSVGTGKELATSLDAA----------------- 46
           AMLRRHP PP  NF+PL+ A R QGFE++  +GKELA SL+AA                 
Sbjct: 680 AMLRRHPEPPQVNFDPLIKAGRHQGFEINTSSGKELAKSLEAAQKENNPYFNTMLKILAT 739

Query: 47  -----AVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPS 101
                AVYF+SGM+Q+++F HYGLA PIYTHFTSPIRRYAD+IVHRLLA C+GADATYP 
Sbjct: 740 RCMMQAVYFTSGMVQETEFFHYGLACPIYTHFTSPIRRYADVIVHRLLAVCVGADATYPD 799

Query: 102 LLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKNALQILI 161
           LLDKK S ALC+NLNYRNR AQYAGRASVAL+THLFFR++VQ+E+GY+L+VRKNALQ   
Sbjct: 800 LLDKKKSHALCHNLNYRNRMAQYAGRASVALNTHLFFRNKVQEEEGYILFVRKNALQ--- 856

Query: 162 PKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFL--RCDSPSVSWTYNEKEQSQSCGSV 219
                                ILIPK+GLEGTL+L  + ++  V++ Y+E+E +Q CG +
Sbjct: 857 ---------------------ILIPKFGLEGTLYLSKKGETSPVTFIYDEEEHTQRCGDI 895

Query: 220 VFHSFDPVTVQLSLDRSNVQHEKLVLRLVRPVIEGFSVSSAGE------QGEEKMEEGE 272
           +F SFD V VQLSLDRSNVQHEKLV +LV+P+I GFS+ S+ E        EE ME  E
Sbjct: 896 IFRSFDQVVVQLSLDRSNVQHEKLVFKLVKPMIPGFSIPSSSEGTAADKPAEEPMELSE 954

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383860552|ref|XP_003705753.1| PREDICTED: exosome complex exonuclease RRP44-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|328786997|ref|XP_397381.4| PREDICTED: exosome complex exonuclease RRP44-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380015637|ref|XP_003691806.1| PREDICTED: exosome complex exonuclease RRP44-like [Apis florea] Back     alignment and taxonomy information
>gi|157130204|ref|XP_001655640.1| mitotic control protein dis3 [Aedes aegypti] gi|108871997|gb|EAT36222.1| AAEL011693-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|119113846|ref|XP_314089.3| AGAP005191-PA [Anopheles gambiae str. PEST] gi|116128315|gb|EAA09476.3| AGAP005191-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|307186828|gb|EFN72248.1| Exosome complex exonuclease RRP44 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332019034|gb|EGI59568.1| Exosome complex exonuclease RRP44 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|340720631|ref|XP_003398737.1| PREDICTED: exosome complex exonuclease RRP44-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|170035482|ref|XP_001845598.1| mitotic control protein dis3 [Culex quinquefasciatus] gi|167877510|gb|EDS40893.1| mitotic control protein dis3 [Culex quinquefasciatus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query279
FB|FBgn0039183983 Dis3 "Dis3" [Drosophila melano 0.741 0.210 0.597 1.7e-64
UNIPROTKB|G3V1J5796 DIS3 "Exosome complex exonucle 0.544 0.190 0.554 4e-50
MGI|MGI:1919912958 Dis3 "DIS3 mitotic control hom 0.584 0.170 0.548 8.8e-50
UNIPROTKB|Q9Y2L1958 DIS3 "Exosome complex exonucle 0.544 0.158 0.554 1.2e-49
UNIPROTKB|F1N1R4951 DIS3 "Uncharacterized protein" 0.695 0.203 0.495 1.5e-49
UNIPROTKB|F1RHF7752 DIS3 "Uncharacterized protein" 0.709 0.263 0.466 1.8e-49
UNIPROTKB|E2RNY6958 DIS3 "Uncharacterized protein" 0.487 0.141 0.612 4.1e-49
ZFIN|ZDB-GENE-080213-3950 dis3 "DIS3 mitotic control hom 0.487 0.143 0.619 9.6e-49
UNIPROTKB|E1BXX6963 DIS3 "Uncharacterized protein" 0.487 0.141 0.619 2.9e-48
UNIPROTKB|G4NDV8990 MGG_00193 "Mitotic control pro 0.462 0.130 0.457 1.2e-33
FB|FBgn0039183 Dis3 "Dis3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 661 (237.7 bits), Expect = 1.7e-64, P = 1.7e-64
 Identities = 132/221 (59%), Positives = 169/221 (76%)

Query:    39 LATSLDAAAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADAT 98
             L T     AVYF SG LQ+ +F HYGLA PIYTHFTSPIRRY+DI+VHRLLAA IGAD+T
Sbjct:   751 LTTRCMMQAVYFISGSLQKEEFFHYGLAAPIYTHFTSPIRRYSDIMVHRLLAASIGADST 810

Query:    99 YPSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKNALQ 158
             Y  LLD+K++  LC+NLNYR++ AQYAGRASVAL+THLFFR + +DE+GYVL+VRKNALQ
Sbjct:   811 YAQLLDRKSNEELCHNLNYRHKMAQYAGRASVALNTHLFFRGKEEDEEGYVLFVRKNALQ 870

Query:   159 ILIPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGS 218
             +LIPK  ++      LY++ +       K G +G   ++ +   + +T+NE++ +Q CG 
Sbjct:   871 VLIPKYGLEG----TLYLKSD-------KDGKDGVERVKSE---IVFTFNEEDHTQRCGD 916

Query:   219 VVFHSFDPVTVQLSLDRSNVQHEKLVLRLVRPVIEGFSVSS 259
             VVFHSFDPVTV+LSLD SNVQHEKL+ RLV+P I+GFSV +
Sbjct:   917 VVFHSFDPVTVRLSLDSSNVQHEKLIFRLVKPYIKGFSVET 957
GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS
GO:0006397 "mRNA processing" evidence=ISS
GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA
GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS
GO:0003723 "RNA binding" evidence=IEA
GO:0005652 "nuclear lamina" evidence=IDA
GO:0005634 "nucleus" evidence=IDA
GO:0071027 "nuclear RNA surveillance" evidence=IMP
GO:0010468 "regulation of gene expression" evidence=IMP
GO:0022008 "neurogenesis" evidence=IMP
UNIPROTKB|G3V1J5 DIS3 "Exosome complex exonuclease RRP44" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1919912 Dis3 "DIS3 mitotic control homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y2L1 DIS3 "Exosome complex exonuclease RRP44" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1N1R4 DIS3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RHF7 DIS3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RNY6 DIS3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080213-3 dis3 "DIS3 mitotic control homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BXX6 DIS3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|G4NDV8 MGG_00193 "Mitotic control protein dis3" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query279
COG0557706 COG0557, VacB, Exoribonuclease R [Transcription] 2e-25
smart00955286 smart00955, RNB, This domain is the catalytic doma 2e-19
pfam00773322 pfam00773, RNB, RNB domain 2e-16
TIGR02063709 TIGR02063, RNase_R, ribonuclease R 2e-14
TIGR00358654 TIGR00358, 3_prime_RNase, VacB and RNase II family 8e-12
PRK05054644 PRK05054, PRK05054, exoribonuclease II; Provisiona 2e-08
PRK11642813 PRK11642, PRK11642, exoribonuclease R; Provisional 2e-06
TIGR02062639 TIGR02062, RNase_B, exoribonuclease II 2e-05
COG4776645 COG4776, Rnb, Exoribonuclease II [Transcription] 3e-05
>gnl|CDD|223631 COG0557, VacB, Exoribonuclease R [Transcription] Back     alignment and domain information 
 Score =  104 bits (262), Expect = 2e-25
 Identities = 49/179 (27%), Positives = 73/179 (40%), Gaps = 22/179 (12%)

Query: 4   AMLRRHPVPPPANFEPLLHAARRQGFELSVGTGKELATSLDA----------AAVYFSSG 53
            + R H  P     + L    +  G  L +G  K                   AV  +  
Sbjct: 467 LLYRTHERPSTEKLQSLREFLQNLGLVLPLGGSKPQPQDYQILLETVKGRPLEAVLQT-- 524

Query: 54  MLQQS---------DFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLD 104
           +L +S         +  H+GLA   YTHFTSPIRRY D+IVHR L A +  +        
Sbjct: 525 LLLRSMKQAEYSPDNVGHFGLALDYYTHFTSPIRRYPDLIVHRQLKALLSGEPIPEKKTS 584

Query: 105 KKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDE-DGYVLYVRKNALQILIP 162
           ++    L  +++   R+AQ A R  + L    + + RV +E DG V  V      + +P
Sbjct: 585 EEELDELAAHISSAERRAQEAERDVIDLLKAEYMKKRVGEEFDGVVTGVTSFGFFVELP 643

Length = 706
>gnl|CDD|214935 smart00955, RNB, This domain is the catalytic domain of ribonuclease II Back     alignment and domain information
>gnl|CDD|216112 pfam00773, RNB, RNB domain Back     alignment and domain information
>gnl|CDD|233703 TIGR02063, RNase_R, ribonuclease R Back     alignment and domain information
>gnl|CDD|232937 TIGR00358, 3_prime_RNase, VacB and RNase II family 3'-5' exoribonucleases Back     alignment and domain information
>gnl|CDD|179920 PRK05054, PRK05054, exoribonuclease II; Provisional Back     alignment and domain information
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional Back     alignment and domain information
>gnl|CDD|131117 TIGR02062, RNase_B, exoribonuclease II Back     alignment and domain information
>gnl|CDD|227117 COG4776, Rnb, Exoribonuclease II [Transcription] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 279
TIGR00358654 3_prime_RNase VacB and RNase II family 3'-5' exori 100.0
PRK11642813 exoribonuclease R; Provisional 100.0
TIGR02063709 RNase_R ribonuclease R. This family consists of an 100.0
PRK05054644 exoribonuclease II; Provisional 100.0
TIGR02062639 RNase_B exoribonuclease II. This family consists o 100.0
COG0557706 VacB Exoribonuclease R [Transcription] 100.0
KOG2102|consensus941 100.0
COG4776645 Rnb Exoribonuclease II [Transcription] 99.95
PF00773325 RNB: RNB domain CAUTION: The Prosite pattern does 99.83
cd0447183 S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domai 99.31
cd0446099 S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain. 98.78
cd0568673 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding dom 98.74
cd0569769 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a t 98.7
cd0568972 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal p 98.63
cd0570877 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a 98.63
cd0569870 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp 98.62
PRK07252120 hypothetical protein; Provisional 98.62
cd0569069 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal p 98.6
cd0570673 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a 98.59
cd0570373 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: R 98.56
cd0570768 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a 98.55
cd0568479 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal 98.54
cd0570574 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a 98.53
TIGR00448179 rpoE DNA-directed RNA polymerase (rpoE), archaeal 98.51
PRK08582139 hypothetical protein; Provisional 98.49
PTZ00248 319 eukaryotic translation initiation factor 2 subunit 98.48
cd0569671 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a t 98.47
cd0445276 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of tr 98.46
cd0446183 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp 98.46
PF0057574 S1: S1 RNA binding domain; InterPro: IPR003029 Rib 98.44
cd0568568 S1_Tex S1_Tex: The C-terminal S1 domain of a trans 98.43
COG1098129 VacB Predicted RNA binding protein (contains ribos 98.37
COG0539 541 RpsA Ribosomal protein S1 [Translation, ribosomal 98.34
PHA0294588 interferon resistance protein; Provisional 98.33
cd0569173 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal p 98.33
cd0569269 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal p 98.3
PRK05807136 hypothetical protein; Provisional 98.29
cd0569566 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a t 98.28
cd0447377 S1_RecJ_like S1_RecJ_like: The S1 domain of the ar 98.28
PLN00207891 polyribonucleotide nucleotidyltransferase; Provisi 98.27
cd0447268 S1_PNPase S1_PNPase: Polynucleotide phosphorylase 98.27
PRK03987 262 translation initiation factor IF-2 subunit alpha; 98.23
COG1095183 RPB7 DNA-directed RNA polymerase, subunit E' [Tran 98.21
cd0568868 S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal p 98.19
PRK08059123 general stress protein 13; Validated 98.18
COG0539 541 RpsA Ribosomal protein S1 [Translation, ribosomal 98.17
cd0569474 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp 98.13
cd0016465 S1_like S1_like: Ribosomal protein S1-like RNA-bin 98.12
PRK08563187 DNA-directed RNA polymerase subunit E'; Provisiona 98.08
PRK07899486 rpsA 30S ribosomal protein S1; Reviewed 98.06
cd0570472 S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a 98.06
smart0031672 S1 Ribosomal protein S1-like RNA-binding domain. 98.05
PRK13806 491 rpsA 30S ribosomal protein S1; Provisional 98.04
cd0568770 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Rib 97.96
cd05693100 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp 97.96
PRK12269863 bifunctional cytidylate kinase/ribosomal protein S 97.95
PRK07899 486 rpsA 30S ribosomal protein S1; Reviewed 97.91
cd0578986 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. 97.9
PRK12269863 bifunctional cytidylate kinase/ribosomal protein S 97.82
PRK07400318 30S ribosomal protein S1; Reviewed 97.81
COG1093 269 SUI2 Translation initiation factor 2, alpha subuni 97.8
PRK06299565 rpsA 30S ribosomal protein S1; Reviewed 97.78
PRK13806491 rpsA 30S ribosomal protein S1; Provisional 97.74
TIGR00717516 rpsA ribosomal protein S1. This model provides tru 97.7
PRK06676390 rpsA 30S ribosomal protein S1; Reviewed 97.69
cd0446567 S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Rib 97.69
COG2183780 Tex Transcriptional accessory protein [Transcripti 97.67
PRK11824693 polynucleotide phosphorylase/polyadenylase; Provis 97.63
PRK06676 390 rpsA 30S ribosomal protein S1; Reviewed 97.61
TIGR00717516 rpsA ribosomal protein S1. This model provides tru 97.55
TIGR02696719 pppGpp_PNP guanosine pentaphosphate synthetase I/p 97.54
PRK00087647 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 97.49
cd0570270 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: R 97.49
PRK06299 565 rpsA 30S ribosomal protein S1; Reviewed 97.45
PRK00087647 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 97.33
cd0445482 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA- 97.26
PHA0285886 EIF2a-like PKR inhibitor; Provisional 97.22
PTZ00162176 DNA-directed RNA polymerase II subunit 7; Provisio 97.19
cd0445388 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-lik 97.13
TIGR03591684 polynuc_phos polyribonucleotide nucleotidyltransfe 97.12
PRK07400 318 30S ribosomal protein S1; Reviewed 97.05
cd0446288 S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA poly 97.03
cd0445567 S1_NusA S1_NusA: N-utilizing substance A protein ( 96.8
PRK09202 470 nusA transcription elongation factor NusA; Validat 96.28
PRK09521189 exosome complex RNA-binding protein Csl4; Provisio 96.23
COG1185692 Pnp Polyribonucleotide nucleotidyltransferase (pol 96.19
PRK1244287 translation initiation factor IF-1; Reviewed 96.15
PRK04163235 exosome complex RNA-binding protein Rrp4; Provisio 95.9
COG2996287 Predicted RNA-bindining protein (contains S1 and H 95.21
cd0569972 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a t 94.5
PRK12327 362 nusA transcription elongation factor NusA; Provisi 94.34
TIGR01953 341 NusA transcription termination factor NusA. This m 93.33
TIGR0000868 infA translation initiation factor IF-1. This fami 91.53
KOG1070|consensus 1710 91.01
KOG1067|consensus760 89.64
KOG3298|consensus170 87.93
cd0579192 S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain. 87.65
KOG1070|consensus 1710 87.53
COG1107 715 Archaea-specific RecJ-like exonuclease, contains D 84.94
COG036175 InfA Translation initiation factor 1 (IF-1) [Trans 84.85
TIGR00757 414 RNaseEG ribonuclease, Rne/Rng family. The C-termin 84.66
PRK12328 374 nusA transcription elongation factor NusA; Provisi 83.54
PRK12329 449 nusA transcription elongation factor NusA; Provisi 81.86
PF08292122 RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; I 80.06
>TIGR00358 3_prime_RNase VacB and RNase II family 3'-5' exoribonucleases Back     alignment and domain information 
Probab=100.00  E-value=1.5e-45  Score=369.65  Aligned_cols=213  Identities=24%  Similarity=0.384  Sum_probs=187.0

Q ss_pred             eeEEeeCCCCCccCHHHHHHHHHHcCCcccCC-----CHHHHHHHHHhh-------------------ccccccCcCCCC
Q psy4846           3 NAMLRRHPVPPPANFEPLLHAARRQGFELSVG-----TGKELATSLDAA-------------------AVYFSSGMLQQS   58 (279)
Q Consensus         3 ~al~R~H~~P~~~~~~~l~~~~~~~g~~~~~~-----~~~~l~~~L~~~-------------------A~Y~~~~~~~~~   58 (279)
                      +++||+|++|+++++++|.++++.+|+.++..     ++.+++..|..+                   |+|      +++
T Consensus       414 p~iyR~h~~p~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~llr~m~~A~y------~~~  487 (654)
T TIGR00358       414 PGIYRVHPGPSKKKLQSLLEFLAELGLTLPGGNAENVTTLDGACWLREVKDRPEYEILVTRLLRSLSQAEY------SPE  487 (654)
T ss_pred             CeEEecCCCCCHHHHHHHHHHHHHcCCCccCCCcCCCChHHHHHHHHHhhCCCHHHHHHHHHHHhhccccc------CCC
Confidence            58999999999999999999999999986432     355666665543                   556      468


Q ss_pred             CccccccCCCCccccccCccccchHHHHHHHHHHHcCCCCCC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4846          59 DFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYP-SLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLF  137 (279)
Q Consensus        59 ~~~H~gL~~~~YthfTSPIRRY~DlivHR~L~a~l~~~~~~~-~~~~~~~l~~~~~~~n~~~r~a~~aer~~~~~~~~~~  137 (279)
                      |.+|||||++.|||||||||||+||+|||||+++|.+....+ ...+.+.+..+|.+||.++++|++|||++.++|.+.|
T Consensus       488 ~~~HfgL~~~~YthfTSPIRRY~DLivHr~L~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~er~a~~aer~~~~~~~~~y  567 (654)
T TIGR00358       488 PLGHFGLGLEHYAHFTSPIRRYPDLTNHRLIKAVLAKEQTDTERYQPQDELLQIAEHCSDTERRARDAERDVADWLKCRY  567 (654)
T ss_pred             CCCccccccccccccCCccccchHHHHHHHHHHHHcCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999997653211 1245677999999999999999999999999999999


Q ss_pred             Hhhccc-eeeEEEEEeecchhhhhcCCCcccCCcceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCCceEee
Q psy4846         138 FRSRVQ-DEDGYVLYVRKNALQILIPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSC  216 (279)
Q Consensus       138 l~~~~~-~~~g~V~~~~~~~~~~~~p~~~~~~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~  216 (279)
                      |+++++ .++|.|+                        +|+++|+||.|+++++||+||+++ +++++|.||+.++.+.+
T Consensus       568 l~~~iG~~~~g~I~------------------------~v~~~GifV~L~~~~veGlV~~s~-l~~d~y~~d~~~~~l~g  622 (654)
T TIGR00358       568 LLDKVGTEFSGEIS------------------------SVTRFGMFVRLDDNGIDGLIHIST-LHNDYYVFDQEKMALIG  622 (654)
T ss_pred             hhhCCCcEEEEEEE------------------------eEEcCcEEEEecCCceEEEEEeEe-CCCcceEEeccccEEEe
Confidence            999975 4888888                        999999999999999999999998 88899999999999988


Q ss_pred             c--CeEecCCCeEEEEEEeccccCCCCeEEEEEe
Q psy4846         217 G--SVVFHSFDPVTVQLSLDRSNVQHEKLVLRLV  248 (279)
Q Consensus       217 ~--~~~~~lGD~V~VkV~~~~vd~~~~~I~~~lv  248 (279)
                      .  +..|++||+|+|+|.  ++|+.+++|+|+++
T Consensus       623 ~~~~~~~~lGD~V~Vki~--~vd~~~~~I~f~l~  654 (654)
T TIGR00358       623 KGTGKVYRIGDRVTVKLT--EVNMETRSIIFELV  654 (654)
T ss_pred             ccCCcEECCCCEEEEEEE--EEecccCeEEEEEC
Confidence            6  578999999999998  99999999999873

This model is defined to identify a pair of paralogous 3-prime exoribonucleases in E. coli, plus the set of proteins apparently orthologous to one or the other in other eubacteria. VacB was characterized originally as required for the expression of virulence genes, but is now recognized as the exoribonuclease RNase R (Rnr). Its paralog in E. coli and H. influenzae is designated exoribonuclease II (Rnb). Both are involved in the degradation of mRNA, and consequently have strong pleiotropic effects that may be difficult to disentangle. Both these proteins share domain-level similarity (RNB, S1) with a considerable number of other proteins, and full-length similarity scoring below the trusted cutoff to proteins associated with various phenotypes but uncertain biochemistry; it may be that these latter proteins are also 3-prime exoribonucleases.
>PRK11642 exoribonuclease R; Provisional Back     alignment and domain information
>TIGR02063 RNase_R ribonuclease R Back     alignment and domain information
>PRK05054 exoribonuclease II; Provisional Back     alignment and domain information
>TIGR02062 RNase_B exoribonuclease II Back     alignment and domain information
>COG0557 VacB Exoribonuclease R [Transcription] Back     alignment and domain information
>KOG2102|consensus Back     alignment and domain information
>COG4776 Rnb Exoribonuclease II [Transcription] Back     alignment and domain information
>PF00773 RNB: RNB domain CAUTION: The Prosite pattern does not correspond to this Pfam Back     alignment and domain information
>cd04471 S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domain Back     alignment and domain information
>cd04460 S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain Back     alignment and domain information
>cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain Back     alignment and domain information
>cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain Back     alignment and domain information
>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>PRK07252 hypothetical protein; Provisional Back     alignment and domain information
>cd05690 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain Back     alignment and domain information
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>cd05684 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide Back     alignment and domain information
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>TIGR00448 rpoE DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form Back     alignment and domain information
>PRK08582 hypothetical protein; Provisional Back     alignment and domain information
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional Back     alignment and domain information
>cd05696 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain Back     alignment and domain information
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains Back     alignment and domain information
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa Back     alignment and domain information
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PHA02945 interferon resistance protein; Provisional Back     alignment and domain information
>cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain Back     alignment and domain information
>cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain Back     alignment and domain information
>PRK05807 hypothetical protein; Provisional Back     alignment and domain information
>cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease Back     alignment and domain information
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional Back     alignment and domain information
>cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain Back     alignment and domain information
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated Back     alignment and domain information
>COG1095 RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] Back     alignment and domain information
>cd05688 S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain Back     alignment and domain information
>PRK08059 general stress protein 13; Validated Back     alignment and domain information
>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain Back     alignment and domain information
>PRK08563 DNA-directed RNA polymerase subunit E'; Provisional Back     alignment and domain information
>PRK07899 rpsA 30S ribosomal protein S1; Reviewed Back     alignment and domain information
>cd05704 S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>smart00316 S1 Ribosomal protein S1-like RNA-binding domain Back     alignment and domain information
>PRK13806 rpsA 30S ribosomal protein S1; Provisional Back     alignment and domain information
>cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain Back     alignment and domain information
>cd05693 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional Back     alignment and domain information
>PRK07899 rpsA 30S ribosomal protein S1; Reviewed Back     alignment and domain information
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain Back     alignment and domain information
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional Back     alignment and domain information
>PRK07400 30S ribosomal protein S1; Reviewed Back     alignment and domain information
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06299 rpsA 30S ribosomal protein S1; Reviewed Back     alignment and domain information
>PRK13806 rpsA 30S ribosomal protein S1; Provisional Back     alignment and domain information
>TIGR00717 rpsA ribosomal protein S1 Back     alignment and domain information
>PRK06676 rpsA 30S ribosomal protein S1; Reviewed Back     alignment and domain information
>cd04465 S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain Back     alignment and domain information
>COG2183 Tex Transcriptional accessory protein [Transcription] Back     alignment and domain information
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional Back     alignment and domain information
>PRK06676 rpsA 30S ribosomal protein S1; Reviewed Back     alignment and domain information
>TIGR00717 rpsA ribosomal protein S1 Back     alignment and domain information
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase Back     alignment and domain information
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed Back     alignment and domain information
>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>PRK06299 rpsA 30S ribosomal protein S1; Reviewed Back     alignment and domain information
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed Back     alignment and domain information
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain Back     alignment and domain information
>PHA02858 EIF2a-like PKR inhibitor; Provisional Back     alignment and domain information
>PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional Back     alignment and domain information
>cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain Back     alignment and domain information
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase Back     alignment and domain information
>PRK07400 30S ribosomal protein S1; Reviewed Back     alignment and domain information
>cd04462 S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA polymerase II (RNAPII) Rpb7 subunit C-terminal S1 domain Back     alignment and domain information
>cd04455 S1_NusA S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain Back     alignment and domain information
>PRK09202 nusA transcription elongation factor NusA; Validated Back     alignment and domain information
>PRK09521 exosome complex RNA-binding protein Csl4; Provisional Back     alignment and domain information
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12442 translation initiation factor IF-1; Reviewed Back     alignment and domain information
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional Back     alignment and domain information
>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] Back     alignment and domain information
>cd05699 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>PRK12327 nusA transcription elongation factor NusA; Provisional Back     alignment and domain information
>TIGR01953 NusA transcription termination factor NusA Back     alignment and domain information
>TIGR00008 infA translation initiation factor IF-1 Back     alignment and domain information
>KOG1070|consensus Back     alignment and domain information
>KOG1067|consensus Back     alignment and domain information
>KOG3298|consensus Back     alignment and domain information
>cd05791 S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain Back     alignment and domain information
>KOG1070|consensus Back     alignment and domain information
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] Back     alignment and domain information
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family Back     alignment and domain information
>PRK12328 nusA transcription elongation factor NusA; Provisional Back     alignment and domain information
>PRK12329 nusA transcription elongation factor NusA; Provisional Back     alignment and domain information
>PF08292 RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; InterPro: IPR013238 Rpc25 is a strongly conserved subunit of RNA polymerase III and has homology to Rpa43 in RNA polymerase I, Rpb7 in RNA polymerase II and the archaeal RpoE subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query279
2wp8_J977 Yeast Rrp44 Nuclease Length = 977 6e-32
4ifd_J1003 Crystal Structure Of An 11-subunit Eukaryotic Exoso 6e-32
2vnu_D760 Crystal Structure Of Sc Rrp44 Length = 760 6e-31
2ix0_A663 Rnase Ii Length = 663 2e-05
2ix1_A664 Rnase Ii D209n Mutant Length = 664 2e-05
2id0_A644 Escherichia Coli Rnase Ii Length = 644 5e-05
>pdb|2WP8|J Chain J, Yeast Rrp44 Nuclease Length = 977 Back     alignment and structure 
Iteration: 1

 Score =  134 bits (337), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 76/187 (40%), Positives = 97/187 (51%), Gaps = 23/187 (12%)
Query: 4   AMLRRHPVPPPANFEPLLHAAR-RQGFELSVGTGKELATSLD------------------ 44
           AMLRRH  PP  NFE L      R+   +S+ + K LA SLD                  
Sbjct: 726 AMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYFNTLVRIMS 785
Query: 45  ----AAAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYP 100
                AA YF SG     DF HYGLA  IYTHFTSPIRRY D++ HR LA  IG +    
Sbjct: 786 TRCMMAAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSL 845
Query: 101 SLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKNALQIL 160
           +  DK     +C N+N ++R AQ+AGRAS+  +     R+    E GYV+ V  N + +L
Sbjct: 846 THRDKNKMDMICRNINRKHRNAQFAGRASIEYYVGQVMRNNESTETGYVIKVFNNGIVVL 905
Query: 161 IPKSRVQ 167
           +PK  V+
Sbjct: 906 VPKFGVE 912
>pdb|4IFD|J Chain J, Crystal Structure Of An 11-subunit Eukaryotic Exosome Complex Bound To Rna Length = 1003 Back     alignment and structure
>pdb|2VNU|D Chain D, Crystal Structure Of Sc Rrp44 Length = 760 Back     alignment and structure
>pdb|2IX0|A Chain A, Rnase Ii Length = 663 Back     alignment and structure
>pdb|2IX1|A Chain A, Rnase Ii D209n Mutant Length = 664 Back     alignment and structure
>pdb|2ID0|A Chain A, Escherichia Coli Rnase Ii Length = 644 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query279
2vnu_D760 Exosome complex exonuclease RRP44; hydrolase-RNA c 7e-68
2wp8_J977 Exosome complex exonuclease DIS3; nucleus, hydrola 1e-66
2r7d_A469 Ribonuclease II family protein; structural genomic 2e-24
2id0_A644 Exoribonuclease 2; RNAse, exonuclease, hydrolyase, 4e-18
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 Length = 760 Back     alignment and structure
 Score =  223 bits (570), Expect = 7e-68
 Identities = 89/275 (32%), Positives = 119/275 (43%), Gaps = 55/275 (20%)

Query: 4   AMLRRHPVPPPANFEPLLHAAR-RQGFELSVGTGKELATSLDAA---------------- 46
           AMLRRH  PP  NFE L      R+   +S+ + K LA SLD                  
Sbjct: 509 AMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYFNTLVRIMS 568

Query: 47  ------AVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYP 100
                 A YF SG     DF HYGLA  IYTHFTSPIRRY D++ HR LA  IG +    
Sbjct: 569 TRCMMAAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSL 628

Query: 101 SLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKNALQIL 160
           +  DK     +C N+N ++R AQ+AGRAS+  +                           
Sbjct: 629 THRDKNKMDMICRNINRKHRNAQFAGRASIEYYVGQVM---------------------- 666

Query: 161 IPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFLRC-DSPSVSWTYNEK------EQS 213
             ++    E GYV+ V  N + +L+PK+G+EG + L        S  ++E         +
Sbjct: 667 --RNNESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPT 724

Query: 214 QSCGSVVFHSFDPVTVQL-SLDRSNVQHEKLVLRL 247
            S      + FD V VQ+ S+        K  L L
Sbjct: 725 NSDKPRDVYVFDKVEVQVRSVMDPITSKRKAELLL 759
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Length = 977 Back     alignment and structure
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A Length = 469 Back     alignment and structure
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A Length = 644 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query279
2vnu_D760 Exosome complex exonuclease RRP44; hydrolase-RNA c 100.0
2wp8_J977 Exosome complex exonuclease DIS3; nucleus, hydrola 100.0
2id0_A644 Exoribonuclease 2; RNAse, exonuclease, hydrolyase, 100.0
2r7d_A469 Ribonuclease II family protein; structural genomic 100.0
1luz_A88 Protein K3, protein K2; stranded anti-parallel bet 98.95
4ayb_E180 DNA-directed RNA polymerase; transferase, multi-su 98.91
2k52_A80 Uncharacterized protein MJ1198; metal-binding, zin 98.85
2ckz_B218 C25, DNA-directed RNA polymerase III 25 KD polypep 98.85
1go3_E187 DNA-directed RNA polymerase subunit E; transferase 98.79
2khi_A115 30S ribosomal protein S1; acetylation, phosphoprot 98.76
2eqs_A103 ATP-dependent RNA helicase DHX8; S1 domain, OB-fol 98.75
2c35_B172 Human RPB7, DNA-directed RNA polymerase II 19 kDa 98.68
1kl9_A182 Eukaryotic translation initiation factor 2 subuni; 98.68
2k4k_A130 GSP13, general stress protein 13; cytoplasm, stres 98.67
2cqo_A119 Nucleolar protein of 40 kDa; S1 domain, OB-fold, s 98.67
2a19_A175 EIF-2- alpha, eukaryotic translation initiation fa 98.65
2b8k_G215 B16, DNA-directed RNA polymerase II 19 kDa polypep 98.63
1y14_B171 B16, RPB7, DNA-directed RNA polymerase II 19 kDa p 98.6
3ayh_B203 DNA-directed RNA polymerase III subunit RPC8; tran 98.56
2khj_A109 30S ribosomal protein S1; OB fold, acetylation, ph 98.47
3h0g_G172 DNA-directed RNA polymerase II subunit RPB7; trans 98.41
3aev_A 275 Translation initiation factor 2 subunit alpha; pro 98.4
1wi5_A119 RRP5 protein homolog; S1 domain, OB-fold, structur 98.37
1q8k_A 308 Eukaryotic translation initiation factor 2 subunit 98.32
3bzc_A785 TEX; helix-turn-helix, helix-hairpin-helix, S1 dom 98.21
3go5_A285 Multidomain protein with S1 RNA-binding domains; s 98.2
3psi_A 1219 Transcription elongation factor SPT6; nucleus; 3.3 98.11
3psf_A1030 Transcription elongation factor SPT6; nucleus; 2.5 98.03
3cw2_C 266 Translation initiation factor 2 subunit alpha; AIF 98.0
4aid_A726 Polyribonucleotide nucleotidyltransferase; transfe 97.98
3cdi_A723 Polynucleotide phosphorylase; mRNA turnover, RNAse 97.78
1e3p_A757 Guanosine pentaphosphate synthetase; polyribonucle 97.69
3m7n_A179 Putative uncharacterized protein AF_0206; exosome, 97.0
2nn6_I209 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, 96.99
2je6_I251 RRP4, exosome complex RNA-binding protein 1; nucle 96.19
3go5_A 285 Multidomain protein with S1 RNA-binding domains; s 96.17
2z0s_A235 Probable exosome complex RNA-binding protein 1; al 95.99
2ba0_A229 Archeal exosome RNA binding protein RRP4; RNAse PH 95.96
1hh2_P 344 NUSA, N utilization substance protein A; transcrip 95.74
2bx2_L 517 Ribonuclease E, RNAse E; RNA-binding, RNA turnover 92.0
2bh8_A101 1B11; transcription, molecular evolution, unique a 91.44
2nn6_H 308 Exosome complex exonuclease RRP4; RNA, exosome, PM 90.17
1k0r_A 366 NUSA; two component arrangement, S1 domain, two K- 89.33
2asb_A 251 Transcription elongation protein NUSA; protein-RNA 89.03
1jjg_A102 M156R; beta barrel, S1 motif, OB fold, MYXV156R, N 84.59
3i4o_A79 Translation initiation factor IF-1; cytoplasm, pro 80.85
2ja9_A175 Exosome complex exonuclease RRP40; RNA-binding pro 80.77
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 Back     alignment and structure
Probab=100.00  E-value=1.2e-48  Score=396.29  Aligned_cols=220  Identities=40%  Similarity=0.601  Sum_probs=192.3

Q ss_pred             ceeEEeeCCCCCccCHHHHHHHHHHc-CCcccCCCHHHHHHHHHhh----------------------ccccccCcCCCC
Q psy4846           2 DNAMLRRHPVPPPANFEPLLHAARRQ-GFELSVGTGKELATSLDAA----------------------AVYFSSGMLQQS   58 (279)
Q Consensus         2 ~~al~R~H~~P~~~~~~~l~~~~~~~-g~~~~~~~~~~l~~~L~~~----------------------A~Y~~~~~~~~~   58 (279)
                      .+++||+|++|++++++.|.++++.+ |+.++..++++|+.+|+++                      |+|+++|.++++
T Consensus       507 ~~~l~R~h~~P~~~~l~~l~~~~~~~~g~~l~~~~~~~l~~~l~~~~~~~~~~~~~ll~~~~~r~m~~A~Y~~~g~~~~~  586 (760)
T 2vnu_D          507 QTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYFNTLVRIMSTRCMMAAQYFYSGAYSYP  586 (760)
T ss_dssp             TTCEEEEBCCCCGGGGHHHHHHHHHHHSCCCCCSCHHHHHHHHHTCCBTTBTTHHHHHHHHHHTTSCCCEEEEGGGSCGG
T ss_pred             CCeeEEecCCCCHHHHHHHHHHHHHccCCCcCCCCHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhhCccccccCcCCCC
Confidence            36899999999999999999999999 9999888888888887731                      999999988899


Q ss_pred             CccccccCCCCccccccCccccchHHHHHHHHHHHcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4846          59 DFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFF  138 (279)
Q Consensus        59 ~~~H~gL~~~~YthfTSPIRRY~DlivHR~L~a~l~~~~~~~~~~~~~~l~~~~~~~n~~~r~a~~aer~~~~~~~~~~l  138 (279)
                      +.||||||+++|||||||||||+||+|||||+++|++....+...+.+.|..+|.+||.++++|+.|||++.++|++.||
T Consensus       587 ~~~HfgLa~~~YtHfTSPIRRY~DLivHR~L~~~l~~~~~~~~~~~~~~l~~~~~~~s~~er~A~~aer~~~~~~~~~~l  666 (760)
T 2vnu_D          587 DFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNKMDMICRNINRKHRNAQFAGRASIEYYVGQVM  666 (760)
T ss_dssp             GGCBTTTTBSCCCCCSCTTTBHHHHHHHHHHHHHTTSSCCCGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceecCCCceeccCchHhhhHHHHHHHHHHHHHccCCCcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999765432333456889999999999999999999999999999999


Q ss_pred             hhccceeeEEEEEeecchhhhhcCCCcccCCcceEEEEEeCeEEEEecCcceeEEEEcccCC--CCCceeeecCCceEee
Q psy4846         139 RSRVQDEDGYVLYVRKNALQILIPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDS--PSVSWTYNEKEQSQSC  216 (279)
Q Consensus       139 ~~~~~~~~g~V~~~~~~~~~~~~p~~~~~~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~--~~d~~~~~~~~~~l~~  216 (279)
                      +.++..++|+|+                        +|+++|+||.||++|+||+||+++ +  ++++|.||+.++++++
T Consensus       667 ~~~~~~~~g~V~------------------------~V~~~G~fV~l~~~giEGlVhis~-L~~~~d~~~fd~~~~~l~g  721 (760)
T 2vnu_D          667 RNNESTETGYVI------------------------KVFNNGIVVLVPKFGVEGLIRLDN-LTEDPNSAAFDEVEYKLTF  721 (760)
T ss_dssp             HTCCSEEEEEEE------------------------EEETTEEEEEETTTTEEEEEEHHH-HCSCGGGCEEETTTTEEEE
T ss_pred             hcCceEEEEEEE------------------------EEECCeEEEEEeCCCcEEEEEecc-ccCCCceeEEcccccEEEE
Confidence            998867888888                        999999999999999999999998 5  4789999999999987


Q ss_pred             c------CeEecCCCeEEEEEEeccccCC---CCeEEEEEe
Q psy4846         217 G------SVVFHSFDPVTVQLSLDRSNVQ---HEKLVLRLV  248 (279)
Q Consensus       217 ~------~~~~~lGD~V~VkV~~~~vd~~---~~~I~~~lv  248 (279)
                      .      +.+|++||+|+|+|.  .+|.+   +++|.|+++
T Consensus       722 ~~~~~~~~~~~~lGD~V~VkV~--~vd~~~~~~~kI~lslk  760 (760)
T 2vnu_D          722 VPTNSDKPRDVYVFDKVEVQVR--SVMDPITSKRKAELLLK  760 (760)
T ss_dssp             CCTTCSSCEEEETTCEEEEEEC----------CCEEEC---
T ss_pred             ecCCCccCcEEecCCEEEEEEE--EEECccccCCcEEEEeC
Confidence            4      378999999999998  88887   699999874
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A Back     alignment and structure
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A Back     alignment and structure
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5 Back     alignment and structure
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E Back     alignment and structure
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii} Back     alignment and structure
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1 Back     alignment and structure
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Back     alignment and structure
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1 Back     alignment and structure
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 Back     alignment and structure
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis} Back     alignment and structure
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A Back     alignment and structure
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 Back     alignment and structure
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ... Back     alignment and structure
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe} Back     alignment and structure
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Back     alignment and structure
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Back     alignment and structure
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A Back     alignment and structure
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5 Back     alignment and structure
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1 Back     alignment and structure
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A Back     alignment and structure
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae} Back     alignment and structure
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae} Back     alignment and structure
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B* Back     alignment and structure
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Back     alignment and structure
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Back     alignment and structure
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Back     alignment and structure
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A Back     alignment and structure
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 Back     alignment and structure
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C Back     alignment and structure
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae} Back     alignment and structure
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1 Back     alignment and structure
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 Back     alignment and structure
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A Back     alignment and structure
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A Back     alignment and structure
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli} Back     alignment and structure
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 Back     alignment and structure
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 Back     alignment and structure
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A Back     alignment and structure
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5 Back     alignment and structure
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5 Back     alignment and structure
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 279
d2vnud4416 b.40.4.16 (D:495-910) Exosome complex exonuclease 7e-28
d2r7da2401 b.40.4.16 (A:3-403) Ribonuclease II family protein 1e-22
d2vnud288 b.40.4.5 (D:911-998) Exosome complex exonuclease R 2e-22
d2ix0a4385 b.40.4.16 (A:173-557) Exoribonuclease 2, RNB {Esch 7e-22
>d2vnud4 b.40.4.16 (D:495-910) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 416 Back     information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: RNB domain-like
domain: Exosome complex exonuclease RRP44
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score =  108 bits (271), Expect = 7e-28
 Identities = 65/159 (40%), Positives = 80/159 (50%), Gaps = 23/159 (14%)

Query: 4   AMLRRHPVPPPANFEPLLH-AARRQGFELSVGTGKELATSLDAA---------------- 46
           AMLRRH  PP  NFE L      R+   +S+ + K LA SLD                  
Sbjct: 256 AMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYFNTLVRIMS 315

Query: 47  ------AVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYP 100
                 A YF SG     DF HYGLA  IYTHFTSPIRRY D++ HR LA  IG +    
Sbjct: 316 TRCMMAAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSL 375

Query: 101 SLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFR 139
           +  DK     +C N+N ++R AQ+AGRAS+  +     R
Sbjct: 376 THRDKNKMDMICRNINRKHRNAQFAGRASIEYYVGQVMR 414
>d2r7da2 b.40.4.16 (A:3-403) Ribonuclease II family protein DR0020 {Deinococcus radiodurans [TaxId: 1299]} Length = 401 Back     information, alignment and structure
>d2vnud2 b.40.4.5 (D:911-998) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 88 Back     information, alignment and structure
>d2ix0a4 b.40.4.16 (A:173-557) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} Length = 385 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query279
d2vnud4416 Exosome complex exonuclease RRP44 {Saccharomyces c 99.97
d2ix0a4385 Exoribonuclease 2, RNB {Escherichia coli [TaxId: 5 99.97
d2r7da2401 Ribonuclease II family protein DR0020 {Deinococcus 99.93
d2ix0a387 Exoribonuclease 2, RNB {Escherichia coli [TaxId: 5 99.58
d1go3e1106 C-terminal domain of RNA polymerase II subunit RBP 99.32
d2vnud288 Exosome complex exonuclease RRP44 {Saccharomyces c 99.28
d1y14b191 C-terminal domain of RNA polymerase II subunit RBP 99.01
d1kl9a286 Eukaryotic initiation factor 2alpha, eIF2alpha, N- 98.92
d2c35b194 C-terminal domain of RNA polymerase II subunit RBP 98.9
d2ahob284 Eukaryotic initiation factor 2alpha, eIF2alpha, N- 98.87
d3bzka494 Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287] 98.73
d1sroa_76 S1 RNA-binding domain of polyribonucleotide phosph 98.63
d1e3pa262 S1 RNA-binding domain of polyribonucleotide phosph 98.48
d2ba0a183 S1-domain of exosome complex RNA-binding protein 1 98.48
d2z0sa188 S1-domain of exosome complex RNA-binding protein 1 98.4
d2je6i187 S1-domain of exosome complex RNA-binding protein 1 98.2
d1wi5a_119 S1-domain of RRP5 protein homolog (PDCD11, KIAA018 98.18
d2nn6h195 S1-domain of Ribosomal RNA-processing protein 4, R 97.82
d1hh2p172 S1 domain of NusA {Thermotoga maritima [TaxId: 233 94.96
d2nn6g188 S1-domain of exosome component 3 (RRP40) {Human (H 94.84
d2ja9a190 S1-domain of exosome component 3 (RRP40) {Saccharo 91.59
d1smxa_87 S1-domain of Ribonuclease E {Escherichia coli [Tax 90.93
d1luza_85 Viral structural mimic of eIF2alpha {Vaccinia viru 90.24
d2asba176 S1 domain of NusA {Mycobacterium tuberculosis [Tax 83.79
>d2vnud4 b.40.4.16 (D:495-910) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: RNB domain-like
domain: Exosome complex exonuclease RRP44
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.97  E-value=7.5e-32  Score=253.99  Aligned_cols=139  Identities=46%  Similarity=0.740  Sum_probs=119.9

Q ss_pred             eeEEeeCCCCCccCHHHHHHHHHH-cCCcccCCCHHHHHHHHHhh----------------------ccccccCcCCCCC
Q psy4846           3 NAMLRRHPVPPPANFEPLLHAARR-QGFELSVGTGKELATSLDAA----------------------AVYFSSGMLQQSD   59 (279)
Q Consensus         3 ~al~R~H~~P~~~~~~~l~~~~~~-~g~~~~~~~~~~l~~~L~~~----------------------A~Y~~~~~~~~~~   59 (279)
                      +++||+|++|+.++++.|.+++.. .|+.++.++...+..+|..+                      |.|+..+.++.++
T Consensus       255 ~~~~R~h~~p~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~~a~~~~~~~~s~~~  334 (416)
T d2vnud4         255 TAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYFNTLVRIMSTRCMMAAQYFYSGAYSYPD  334 (416)
T ss_dssp             TCEEEEBCCCCGGGGHHHHHHHHHHHSCCCCCSCHHHHHHHHHTCCBTTBTTHHHHHHHHHHTTSCCCEEEEGGGSCGGG
T ss_pred             CCccceeCCCCHHHHHHHHHHHHHhcccCcCccchhhHHHHHHHHhCccCchHHHHHHHHHHHHHHHHHhhccccCCCCc
Confidence            589999999999999999998864 46666666666666665443                      7788888889999


Q ss_pred             ccccccCCCCccccccCccccchHHHHHHHHHHHcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4846          60 FHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFR  139 (279)
Q Consensus        60 ~~H~gL~~~~YthfTSPIRRY~DlivHR~L~a~l~~~~~~~~~~~~~~l~~~~~~~n~~~r~a~~aer~~~~~~~~~~l~  139 (279)
                      .+|||||++.|||||||||||+||+|||||+++|.+++......+.+.|..+|.+||.+++.|++|||++.++|.+.||+
T Consensus       335 ~~H~gLgl~~YthfTSPIRRY~DLv~hrqL~a~l~~~~~~~~~~~~e~l~~i~~~~~~~e~~a~~aer~~~~~~~~~~lk  414 (416)
T d2vnud4         335 FRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNKMDMICRNINRKHRNAQFAGRASIEYYVGQVMR  414 (416)
T ss_dssp             GCBTTTTBSCCCCCSCTTTBHHHHHHHHHHHHHTTSSCCCGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcHhhCcccccccCcHHhhHHHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999998765433334568899999999999999999999999999999998


Q ss_pred             hc
Q psy4846         140 SR  141 (279)
Q Consensus       140 ~~  141 (279)
                      ++
T Consensus       415 ~~  416 (416)
T d2vnud4         415 NN  416 (416)
T ss_dssp             TC
T ss_pred             CC
Confidence            64
>d2ix0a4 b.40.4.16 (A:173-557) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2r7da2 b.40.4.16 (A:3-403) Ribonuclease II family protein DR0020 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2vnud2 b.40.4.5 (D:911-998) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c35b1 b.40.4.5 (B:78-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nn6h1 b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hh2p1 b.40.4.5 (P:127-198) S1 domain of NusA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2nn6g1 b.40.4.5 (G:107-194) S1-domain of exosome component 3 (RRP40) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ja9a1 b.40.4.5 (A:62-151) S1-domain of exosome component 3 (RRP40) {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1smxa_ b.40.4.5 (A:) S1-domain of Ribonuclease E {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1luza_ b.40.4.5 (A:) Viral structural mimic of eIF2alpha {Vaccinia virus [TaxId: 10245]} Back     information, alignment and structure
>d2asba1 b.40.4.5 (A:108-183) S1 domain of NusA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure