Psyllid ID: psy4866
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 537 | 2.2.26 [Sep-21-2011] | |||||||
| B0WC46 | 517 | Facilitated trehalose tra | N/A | N/A | 0.836 | 0.868 | 0.25 | 3e-44 | |
| Q17NV8 | 806 | Facilitated trehalose tra | N/A | N/A | 0.837 | 0.558 | 0.251 | 1e-41 | |
| A5LGM7 | 504 | Facilitated trehalose tra | N/A | N/A | 0.837 | 0.892 | 0.253 | 6e-41 | |
| B4QBN3 | 488 | Facilitated trehalose tra | N/A | N/A | 0.787 | 0.866 | 0.274 | 2e-40 | |
| Q7PIR5 | 793 | Facilitated trehalose tra | no | N/A | 0.837 | 0.567 | 0.242 | 3e-40 | |
| A9ZSY3 | 505 | Facilitated trehalose tra | N/A | N/A | 0.871 | 0.926 | 0.244 | 5e-40 | |
| B4HNS1 | 488 | Facilitated trehalose tra | N/A | N/A | 0.787 | 0.866 | 0.274 | 6e-40 | |
| Q8MKK4 | 488 | Facilitated trehalose tra | no | N/A | 0.817 | 0.899 | 0.268 | 1e-39 | |
| Q291H8 | 868 | Facilitated trehalose tra | no | N/A | 0.940 | 0.581 | 0.251 | 4e-39 | |
| B4GAP7 | 869 | Facilitated trehalose tra | N/A | N/A | 0.940 | 0.581 | 0.251 | 4e-39 |
| >sp|B0WC46|TRET1_CULQU Facilitated trehalose transporter Tret1 OS=Culex quinquefasciatus GN=Tret1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 180 bits (456), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 114/456 (25%), Positives = 228/456 (50%), Gaps = 7/456 (1%)
Query: 69 VTACIAAFTTGMSFAWSAPVLEELLSKE-SPIPMSPNEGSWVVAIIEIGNYLSPIPAGML 127
++ + + G S A+++P L + + + ++ GSWV I+ + + I G L
Sbjct: 61 LSVSLGSMVVGFSSAYTSPALVSMKDRNITSFEVTDQSGSWVGGIMPLAGLVGGILGGPL 120
Query: 128 VNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISE 187
+ +GRK ++L T SW++ + V + V R L GFS+ + P+YLGE +
Sbjct: 121 IEYLGRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSLPVYLGETVQ 180
Query: 188 TSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYA 247
+RGT+G L ++GIL +V G+ + + +P+ F + +PE+P +Y
Sbjct: 181 PEVRGTLGLLPTAFGNIGILLCFVAGNYMDWSELAFLGATLPVPFLILMFLIPETPRWYV 240
Query: 248 IKNQEGKAIESLKWLRNKTADQVQSELQ-IIK--QNTSKNVERTNFREFMGRSNMKAFVF 304
+ ++ +A ++L+WLR K AD V EL+ IIK Q+ ++ ++ + + ++N+K +
Sbjct: 241 SRGRDDRARKALQWLRGKKAD-VDPELKGIIKSHQDAERHASQSAMLDLLKKTNLKPLLI 299
Query: 305 MAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGR 364
L F+ +G+ ++I Y IF + + + + +I+ ++ ++ F +T IDR GR
Sbjct: 300 SLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDENLCTIIVGVVNFIATFIATLLIDRLGR 359
Query: 365 RVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTP 424
++L +S + G ++YV ++ + W+P S + + F+LGFGP+
Sbjct: 360 KMLLYISDIAMIITLMTLGGFFYVKNN-GGDVSHIGWLPLASFVIFVLGFSLGFGPIPWL 418
Query: 425 LLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYL 484
++ E ++ + +V + + K F + IG + F G +V V++
Sbjct: 419 MMGEILPGKIRGSAASVATAFNWSCTFVVTKTFADIIASIGTHGAFWMFGSVCVVGLVFV 478
Query: 485 YYFLLETKGKTFNEIQYMFKYGKNEYMASLYSQQPL 520
++ ET+GK+ +I+ G+ M+S+ + +PL
Sbjct: 479 IMYVPETQGKSLEDIERKM-CGRVRRMSSVANIKPL 513
|
High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Culex quinquefasciatus (taxid: 7176) |
| >sp|Q17NV8|TRET1_AEDAE Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (433), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 115/457 (25%), Positives = 226/457 (49%), Gaps = 7/457 (1%)
Query: 68 CVTACIAAFTTGMSFAWSAPVLEELLSKE-SPIPMSPNEGSWVVAIIEIGNYLSPIPAGM 126
++ + + G S A+++P L + + + ++ GSWV I+ + I G
Sbjct: 349 ALSVSLGSMVVGFSSAYTSPALVSMKDRNITSFEVTDQSGSWVGGIMPLAGLAGGILGGP 408
Query: 127 LVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEIS 186
L+ +GRK ++L T SW++ + V + V R L GFS+ + P+YLGE
Sbjct: 409 LIEYLGRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSLPVYLGETV 468
Query: 187 ETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFY 246
+ +RGT+G L ++GIL +V G + + +PI F + +PE+P +Y
Sbjct: 469 QPEVRGTLGLLPTAFGNIGILLCFVAGKYMDWSGLAFLGAALPIPFLLLMFLIPETPRWY 528
Query: 247 AIKNQEGKAIESLKWLRNKTADQVQSELQ-IIK--QNTSKNVERTNFREFMGRSNMKAFV 303
+ ++ +A ++L+WLR K AD V EL+ IIK Q+ ++ ++ + M ++N+K +
Sbjct: 529 VSRGRDDRARKALQWLRGKKAD-VDPELKGIIKSHQDAERHASQSAMLDLMKKANLKPLL 587
Query: 304 FMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAG 363
L F+ +G+ ++I Y IF + + + + +I+ ++ ++ F +T IDR G
Sbjct: 588 ISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDENLCTIIVGVVNFIATFIATMLIDRLG 647
Query: 364 RRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFT 423
R++L +S + G ++YV Q ++ W+P + + + F+LGFGP+
Sbjct: 648 RKMLLYISDVAMIITLMTLGGFFYVKNSGQ-DVSQVGWLPLAAFVIYVLGFSLGFGPIPW 706
Query: 424 PLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVY 483
++ E ++ + +V + I K F + IG + F G ++ +
Sbjct: 707 LMMGEILPGKIRGSAASVATAFNWSCTFIVTKTFADIINAIGTHGTFWMFGSICVIGLAF 766
Query: 484 LYYFLLETKGKTFNEIQYMFKYGKNEYMASLYSQQPL 520
+ +++ ET+GK+ +I+ G+ M+S+ + +PL
Sbjct: 767 VIFYVPETQGKSLEDIERKM-MGRVRRMSSVANIKPL 802
|
High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Aedes aegypti (taxid: 7159) |
| >sp|A5LGM7|TRET1_POLVA Facilitated trehalose transporter Tret1 OS=Polypedilum vanderplanki GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 116/457 (25%), Positives = 224/457 (49%), Gaps = 7/457 (1%)
Query: 68 CVTACIAAFTTGMSFAWSAPVLEELLSKE-SPIPMSPNEGSWVVAIIEIGNYLSPIPAGM 126
+ + + G + A+++P L + + + ++ E SWV I+ + I G
Sbjct: 47 AIAVSMGSMVVGFASAYTSPALVSMQNTTITSFKVTEQEASWVGGIMPLAGLAGGIAGGP 106
Query: 127 LVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEIS 186
+ +GRK ++L T +W++ ++ S+ + R L GF + + P+YLGE
Sbjct: 107 FIEYLGRKNTILATAVPFIVAWLLIAFANSIWMVLAGRALSGFCVGIASLSLPVYLGETV 166
Query: 187 ETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFY 246
+ +RGT+G L ++GIL +V G +++ I+PI F V + +PE+P ++
Sbjct: 167 QPEVRGTLGLLPTAFGNIGILICFVAGKYVNWSGLAFIGSILPIPFMVLTLLIPETPRWF 226
Query: 247 AIKNQEGKAIESLKWLRNKTADQVQSELQ-IIKQN--TSKNVERTNFREFMGRSNMKAFV 303
+ +E +A ++L+WLR K AD V+ EL+ I+K + ++ + + M RSN+K +
Sbjct: 227 VTRGREERARKALQWLRGKKAD-VEPELKGIVKSHCEAERHASQNAIFDLMKRSNLKPLL 285
Query: 304 FMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAG 363
L F+ +G+ ++I Y +IF + + + + +I+ ++ + F +T IDR G
Sbjct: 286 IALGLMFFQQLSGINAVIFYTVSIFKDAGSTIDENLCTIIVGVVNFGATFFATVLIDRLG 345
Query: 364 RRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFT 423
R++L +S + G ++Y ++ W+P S + + F+ G GP+
Sbjct: 346 RKILLYISEVAMVITLLTLGTFFYYK-NSGNDVSNIGWLPLASFVIYVIGFSSGVGPIPW 404
Query: 424 PLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVY 483
+L E ++ + +V T I K F + IG + F F GV L+ +
Sbjct: 405 LMLGEILPGKIRGSAASVATGFNWTCTFIVTKTFADIVAAIGNHGAFWFFGVICLIGLFF 464
Query: 484 LYYFLLETKGKTFNEIQYMFKYGKNEYMASLYSQQPL 520
+ +F+ ET+GK+ EI+ G+ M+S+ + +PL
Sbjct: 465 VIFFVPETQGKSLEEIERKM-MGRVRRMSSVANMKPL 500
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High-capacity facilitative transporter for trehalose, required to induce anhydrobiosis. Anhydrobiotic larvae can survive almost complete dehydration. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Polypedilum vanderplanki (taxid: 319348) |
| >sp|B4QBN3|TRE12_DROSI Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila simulans GN=Tret1-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 122/445 (27%), Positives = 221/445 (49%), Gaps = 22/445 (4%)
Query: 67 LCVTACIAAFTTGMSFAWSAPVLEELLSKE-SPIPMSPNEGSWVVAIIEIGNYLSPIPAG 125
L V+ C + G A+++P L + + + ++ + GSWV I+ + I G
Sbjct: 33 LSVSLC--SLVVGFVSAYTSPALVSMTDRTITSFEVTKDAGSWVGGIMPLAALAGGITGG 90
Query: 126 MLVNRIGRKWSLLMTG-PITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGE 184
L+ +GR+ ++L T P +S +IA + +V+ + R L GF + + P+YLGE
Sbjct: 91 PLIEYLGRRTTILATAVPFIVSSLLIAC-AVNVIMILCGRFLTGFCVGIASLSLPVYLGE 149
Query: 185 ISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPY 244
+ +RGT+G L ++GIL YV GS +++ +P+ F + + +PE+P
Sbjct: 150 TLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALPVPFLILMIIIPETPR 209
Query: 245 FYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSK---NVERTNFREFMGRSNMKA 301
++ + QE +A ++LKWLR K AD V+ EL+ + Q+ ++ R E R N+K
Sbjct: 210 WFVNRGQEERARKALKWLRGKEAD-VEPELKDLMQSQAEADSQARRNTCLELFKRINLKP 268
Query: 302 FVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDR 361
L F+ F+G+ ++I Y IF + + + S+ +I+ I+ + F IDR
Sbjct: 269 LSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLCTIIVGIVNFFATFMGILLIDR 328
Query: 362 AGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPL 421
GR++L +S L I G ++Y ++ + W+P + + F+LGFGP+
Sbjct: 329 LGRKILLYISDIAMILTLSILGGFFYCKAH-GPDVSHLGWLPLTCFVIYILGFSLGFGPI 387
Query: 422 FTPLLSEYFSSNMKAVSCAVI---NILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSL 478
++ E + ++ + +V+ N CT + K F + +G + F GV
Sbjct: 388 PWLMMGEILPAKIRGPAASVVTAFNWFCT---FVVTKTFQDLTVAMGAHGAFWLFGV--- 441
Query: 479 VCTVYLYYFLL---ETKGKTFNEIQ 500
VC V L++ ++ ET+GK+ EI+
Sbjct: 442 VCIVGLFFVIICVPETRGKSLEEIE 466
|
Fails to transport trehalose. Drosophila simulans (taxid: 7240) |
| >sp|Q7PIR5|TRET1_ANOGA Facilitated trehalose transporter Tret1 OS=Anopheles gambiae GN=Tret1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 111/457 (24%), Positives = 222/457 (48%), Gaps = 7/457 (1%)
Query: 68 CVTACIAAFTTGMSFAWSAPVLEELLSKE-SPIPMSPNEGSWVVAIIEIGNYLSPIPAGM 126
++ + + G S A+++P L + + + ++ GSWV I+ + I G
Sbjct: 336 ALSVSLGSMVVGFSSAYTSPALVSMKDRNITSFEVTDQSGSWVGGIMPLAGLAGGILGGP 395
Query: 127 LVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEIS 186
++ +GRK ++L T SW++ + V + V R L G + + P+YLGE
Sbjct: 396 MIEYLGRKNTILATATPFIISWLLIGCATHVAMVLVGRALSGLCVGIASLSLPVYLGETV 455
Query: 187 ETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFY 246
+ +RGT+G L ++GIL +V G L + +PI F + +PE+P +Y
Sbjct: 456 QPEVRGTLGLLPTAFGNIGILLCFVAGKYLDWSGLAFLGAALPIPFLLLMFLIPETPRWY 515
Query: 247 AIKNQEGKAIESLKWLRNKTADQVQSELQII---KQNTSKNVERTNFREFMGRSNMKAFV 303
+N+E +A ++L+WLR + AD V+ EL+ I Q+ ++ + + + ++N+K +
Sbjct: 516 VSRNREDRARKALQWLRGRKAD-VEPELKGISKSHQDAERHASSSAMLDLLNKANLKPLL 574
Query: 304 FMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAG 363
L F+ +G+ ++I Y IF S+ + + +I+ ++ ++ F +T IDR G
Sbjct: 575 ISLGLMFFQQLSGINAVIFYTVQIFQSAGSTIDEKLCTIIVGVVNFIATFIATVLIDRLG 634
Query: 364 RRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFT 423
R++L +S + G ++Y+ ++ W+P + + V F+LGFGP+
Sbjct: 635 RKILLYISDVAMIITLMTLGTFFYMKNNGD-DVSEIGWLPLAAFVVFVVGFSLGFGPIPW 693
Query: 424 PLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVY 483
++ E ++ + +V + + K F + IG + F G +V ++
Sbjct: 694 LMMGEILPGKIRGSAASVATAFNWSCTFVVTKTFADITASIGNHGAFWMFGSICIVGLLF 753
Query: 484 LYYFLLETKGKTFNEIQYMFKYGKNEYMASLYSQQPL 520
+ ++ ET+GK+ +I+ G+ M+S+ + +PL
Sbjct: 754 VIVYVPETQGKSLEDIERKM-MGRVRRMSSVANIKPL 789
|
High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Anopheles gambiae (taxid: 7165) |
| >sp|A9ZSY3|TRET1_BOMMO Facilitated trehalose transporter Tret1 OS=Bombyx mori GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 166 bits (419), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 117/479 (24%), Positives = 228/479 (47%), Gaps = 11/479 (2%)
Query: 45 NYTADFGSELRYLHTVLFLFSFLCVT--ACIAAFTTGMSFAWSAPVLEELLSKESPIPMS 102
Y + G+ + LFL++ L + + G S +++P + L+ + ++
Sbjct: 30 EYDNEDGTPYKSTTQKLFLWTQLLAAFAVSVGSMNVGFSSGYTSPAV---LTMNITLDIT 86
Query: 103 PNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYV 162
E +WV ++ + + I G L+ +GRK +++ T T W++ + +V+ ++
Sbjct: 87 KEEITWVGGLMPLAALVGGIVGGPLIEYLGRKKTIMGTAVPFTIGWMLIANAINVVMVFA 146
Query: 163 MRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYL 222
R + G + + + P+Y+GE + +RG +G L + GIL +++GS L + N
Sbjct: 147 GRVICGVCVGIVSLAFPVYIGETIQPEVRGALGLLPTAFGNTGILLAFLVGSYLDWSNLA 206
Query: 223 TYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQ--IIKQN 280
+ IP+ F + + PE+P +Y K + +A +SL+WLR K + ++ E++ I Q
Sbjct: 207 FFGAAIPVPFFLLMILTPETPRWYVSKARVQEARKSLRWLRGKNVN-IEKEMRDLTISQT 265
Query: 281 TSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYI 340
S F++ + + A + L +F+ TG+ ++I YA +IF S + + +
Sbjct: 266 ESDRTGGNAFKQLFSKRYLPAVMISLGLMLFQQLTGINAVIFYAASIFQMSGSSVDENLA 325
Query: 341 SILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTS 400
SI+ ++ +S F +T IDR GR+VL +SS G Y+Y+ + ++
Sbjct: 326 SIIIGVVNFISTFIATMLIDRLGRKVLLYISSVAMITTLLALGAYFYLK-QNHIDVTAYG 384
Query: 401 WVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLM 460
W+P + + + F++GFGP+ +L E S ++ + ++ T I K F +
Sbjct: 385 WLPLACLVIYVLGFSIGFGPIPWLMLGEILPSKIRGTAASLATGFNWTCTFIVTKTFQNI 444
Query: 461 DKHIGMYSNFLFGGVSSLVCTVYLYYFLLETKGKTFNEIQYMFKYGKNEYMASLYSQQP 519
I M+ V + +++ +F+ ETKGK+ EI+ G S+QP
Sbjct: 445 IDAIYMHGTLWLFAVICIGGLLFVIFFVPETKGKSLEEIEMKLTSGSRRVRN--ISKQP 501
|
High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Bombyx mori (taxid: 7091) |
| >sp|B4HNS1|TRE12_DROSE Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila sechellia GN=Tret1-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 166 bits (419), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 122/445 (27%), Positives = 222/445 (49%), Gaps = 22/445 (4%)
Query: 67 LCVTACIAAFTTGMSFAWSAPVLEELLSKE-SPIPMSPNEGSWVVAIIEIGNYLSPIPAG 125
L V+ C + G A+++P L + + + ++ + GSWV I+ + I G
Sbjct: 33 LSVSLC--SLVVGFVSAYTSPALVSMTDRTITSFEVTKDAGSWVGGIMPLAALAGGITGG 90
Query: 126 MLVNRIGRKWSLLMTG-PITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGE 184
L+ +GR+ ++L T P +S +IA + +V+ + R L GF + + P+YLGE
Sbjct: 91 PLIEYLGRRNTILATAVPFIVSSLLIAC-AVNVIMILCGRFLTGFCVGIASLSLPVYLGE 149
Query: 185 ISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLI---IPIIFTVTFMFMPE 241
+ +RGT+G L ++GIL YV GS +MN+ + + +P+ F + + +PE
Sbjct: 150 TLQPEVRGTLGLLPTALGNIGILVCYVAGS---FMNWSILAFLGAALPVPFLILMIIIPE 206
Query: 242 SPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSK---NVERTNFREFMGRSN 298
+P ++ + QE +A ++LKWLR K AD V+ EL+ + Q+ ++ R E R N
Sbjct: 207 TPRWFVNRGQEERARKALKWLRGKEAD-VEPELKDLMQSQAEADSQATRNTCLELFKRIN 265
Query: 299 MKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYY 358
+K L F+ F+G+ ++I Y IF + + + S+ +I+ I+ + F
Sbjct: 266 LKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLCTIIVGIVNFFATFMGIIL 325
Query: 359 IDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGF 418
IDR GR++L VS L I G ++Y ++ + W+P + + F+LGF
Sbjct: 326 IDRLGRKILLYVSDIAMILTLSILGGFFYCKAH-GPDVSHLGWLPLSCFVIYILGFSLGF 384
Query: 419 GPLFTPLLSEYFSSNMKAVSCAVI---NILCTTLGLISYKLFFLMDKHIGMYSNFLFGGV 475
GP+ ++ E + ++ + +V+ N CT + K F + +G + F GV
Sbjct: 385 GPIPWLMMGEILPAKIRGPAASVVTAFNWFCT---FVVTKTFQDLTVAMGPHGAFWLFGV 441
Query: 476 SSLVCTVYLYYFLLETKGKTFNEIQ 500
+V ++ ++ ET+GK+ EI+
Sbjct: 442 VCIVGLFFVIIYVPETRGKSLEEIE 466
|
Fails to transport trehalose. Drosophila sechellia (taxid: 7238) |
| >sp|Q8MKK4|TRE12_DROME Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila melanogaster GN=Tret1-2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 125/465 (26%), Positives = 230/465 (49%), Gaps = 26/465 (5%)
Query: 67 LCVTACIAAFTTGMSFAWSAPVLEELLSKE-SPIPMSPNEGSWVVAIIEIGNYLSPIPAG 125
L V+ C + G A+++P L + + + ++ + GSWV I+ + I G
Sbjct: 33 LSVSLC--SLVVGFVSAYTSPALVSMTDRTITSFEVTKDAGSWVGGIMPLAALAGGITGG 90
Query: 126 MLVNRIGRKWSLLMTG-PITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGE 184
L+ +GR+ ++L T P +S +IA + +V+ + R L GF + + P+YLGE
Sbjct: 91 PLIEYLGRRSTILATAVPFIVSSLLIAC-AVNVIMILCGRFLTGFCVGIASLSLPVYLGE 149
Query: 185 ISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPY 244
+ +RGT+G L ++GIL YV GS +++ +P+ F + + +PE+P
Sbjct: 150 TLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALPVPFLILMIIIPETPR 209
Query: 245 FYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQ---NTSKNVERTNFREFMGRSNMKA 301
++ + QE +A ++LKWLR K AD V+ EL+ + Q + + + E R+N+K
Sbjct: 210 WFVNRGQEERARKALKWLRGKEAD-VEPELKELMQSQADADRQATQNTCLELFKRNNLKP 268
Query: 302 FVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDR 361
L F+ F+G+ ++I Y IF + + + S+ +I+ ++ + F IDR
Sbjct: 269 LSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLSTIIVGVVNFFATFMGIILIDR 328
Query: 362 AGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPL 421
GR++L VS + I G ++Y ++ + W+P + + F+LGFGP+
Sbjct: 329 LGRKILLYVSDIAMIVTLSILGGFFYCKAH-GPDVSHLGWLPLTCFVIYILGFSLGFGPI 387
Query: 422 FTPLLSEYFSSNMKAVSCAVI---NILCTTLGLISYKLFFLMDKHIGMYSNF-LFGGVSS 477
++ E + ++ + +V+ N CT + K F + +G + F LFG
Sbjct: 388 PWLMMGEILPAKIRGPAASVVTAFNWFCT---FVVTKTFQDLTVAMGAHGAFWLFGA--- 441
Query: 478 LVCTVYLYY---FLLETKGKTFNEIQYMFKYGKNEYMASLYSQQP 519
+C V L++ F+ ET+GK+ EI+ K M+S+ + +P
Sbjct: 442 -ICIVGLFFVIIFVPETRGKSLEEIER--KMMGRVPMSSVVNIKP 483
|
Fails to transport trehalose. Drosophila melanogaster (taxid: 7227) |
| >sp|Q291H8|TRET1_DROPS Facilitated trehalose transporter Tret1 OS=Drosophila pseudoobscura pseudoobscura GN=Tret1 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 136/541 (25%), Positives = 258/541 (47%), Gaps = 36/541 (6%)
Query: 2 HTSSKYFHYKYCNSIDSVRAVE--------GVQGANNSMIPPNIQQNNGQWNYTADFGSE 53
HTS ++F + S DS ++ +G N P ++Q T D +
Sbjct: 338 HTSRQHFQQQRSISTDSRKSRRPYEMDEMGNKRGENIRHAVPFVRQ------ITEDGKPK 391
Query: 54 LR-YLHTVLFLFSFLCVTACIA----AFTTGMSFAWSAPVLEELLSKE-SPIPMSPNEGS 107
L Y T ++ + V A ++ + G A+++P L + ++ + ++P S
Sbjct: 392 LEVYRPTTNPIYIWTQVLAALSVSLGSLVVGFVSAYTSPALVSMTNRNMTSFEVTPQAAS 451
Query: 108 WVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTG-PITTASWIIAMYSRSVLGLYVMRTL 166
WV I+ + I G + +GR+ ++L T P +S +IA + +V + R L
Sbjct: 452 WVGGIMPLAGLAGGIAGGPFIEYLGRRNTILATAIPFIVSSLLIAC-AVNVAMVLAGRFL 510
Query: 167 QGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSL 226
GF + + P+YLGE + +RGT+G L ++GIL +V G+ + +
Sbjct: 511 AGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGA 570
Query: 227 IIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQII---KQNTSK 283
+P+ F + +PE+P ++ + +E KA ++L WLR K AD V+ EL+ + + + +
Sbjct: 571 ALPVPFLILMFLIPETPRWFVSRGREEKARKALSWLRGKEAD-VEPELKGLMRSQADADR 629
Query: 284 NVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISIL 343
+ E + R+N+K L F+ +G+ ++I Y +IF + + + + +I+
Sbjct: 630 QATQNKMMELLKRNNLKPLSISLGLMFFQQLSGINAVIFYTVSIFKDAGSTIDGNLCTII 689
Query: 344 FAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVP 403
I+ ++ F +T IDRAGR++L VS+ + F+ G ++Y Q ++ W+P
Sbjct: 690 VGIVNFMATFIATLLIDRAGRKILLYVSNIAMIITLFVLGGFFYCKSHGQ-DVSQLGWLP 748
Query: 404 FLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKH 463
+ + F+LGFGP+ ++ E S ++ + +V + + K F M
Sbjct: 749 LSCFVIYILGFSLGFGPIPWLMMGEILPSKIRGSAASVATAFNWSCTFVVTKTFQDMIDF 808
Query: 464 IGMYSNF-LFGGVSSLVCTVYLYYFLL---ETKGKTFNEIQYMFKYGKNEYMASLYSQQP 519
+G + F LFG +C + L++ +L ET+GKT +I+ G+ M+S+ + +P
Sbjct: 809 MGAHGAFWLFGS----ICFIGLFFVILYVPETQGKTLEDIERKM-MGRVRRMSSVANMKP 863
Query: 520 L 520
L
Sbjct: 864 L 864
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila pseudoobscura pseudoobscura (taxid: 46245) |
| >sp|B4GAP7|TRET1_DROPE Facilitated trehalose transporter Tret1 OS=Drosophila persimilis GN=Tret1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 136/541 (25%), Positives = 258/541 (47%), Gaps = 36/541 (6%)
Query: 2 HTSSKYFHYKYCNSIDSVRAVE--------GVQGANNSMIPPNIQQNNGQWNYTADFGSE 53
HTS ++F + S DS ++ +G N P ++Q T D +
Sbjct: 339 HTSRQHFQQQRSISTDSRKSRRPYEMDEMGNKRGENIRHAVPFVRQ------ITEDGKPK 392
Query: 54 LR-YLHTVLFLFSFLCVTACIA----AFTTGMSFAWSAPVLEELLSKE-SPIPMSPNEGS 107
L Y T ++ + V A ++ + G A+++P L + ++ + ++P S
Sbjct: 393 LEVYRPTTNPIYIWTQVLAALSVSLGSLVVGFVSAYTSPALVSMTNRNMTSFEVTPQAAS 452
Query: 108 WVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTG-PITTASWIIAMYSRSVLGLYVMRTL 166
WV I+ + I G + +GR+ ++L T P +S +IA + +V + R L
Sbjct: 453 WVGGIMPLAGLAGGIAGGPFIEYLGRRNTILATAIPFIVSSLLIAC-AVNVAMVLAGRFL 511
Query: 167 QGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSL 226
GF + + P+YLGE + +RGT+G L ++GIL +V G+ + +
Sbjct: 512 AGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGA 571
Query: 227 IIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQII---KQNTSK 283
+P+ F + +PE+P ++ + +E KA ++L WLR K AD V+ EL+ + + + +
Sbjct: 572 ALPVPFLILMFLIPETPRWFVSRGREEKARKALSWLRGKEAD-VEPELKGLMRSQADADR 630
Query: 284 NVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISIL 343
+ E + R+N+K L F+ +G+ ++I Y +IF + + + + +I+
Sbjct: 631 QATQNKMMELLKRNNLKPLSISLGLMFFQQLSGINAVIFYTVSIFKDAGSTIDGNLCTII 690
Query: 344 FAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVP 403
I+ ++ F +T IDRAGR++L VS+ + F+ G ++Y Q ++ W+P
Sbjct: 691 VGIVNFMATFIATLLIDRAGRKILLYVSNIAMIITLFVLGGFFYCKSHGQ-DVSQLGWLP 749
Query: 404 FLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKH 463
+ + F+LGFGP+ ++ E S ++ + +V + + K F M
Sbjct: 750 LSCFVIYILGFSLGFGPIPWLMMGEILPSKIRGSAASVATAFNWSCTFVVTKTFQDMIDF 809
Query: 464 IGMYSNF-LFGGVSSLVCTVYLYYFLL---ETKGKTFNEIQYMFKYGKNEYMASLYSQQP 519
+G + F LFG +C + L++ +L ET+GKT +I+ G+ M+S+ + +P
Sbjct: 810 MGAHGAFWLFGS----ICFIGLFFVILYVPETQGKTLEDIERKM-MGRVRRMSSVANMKP 864
Query: 520 L 520
L
Sbjct: 865 L 865
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila persimilis (taxid: 7234) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 537 | ||||||
| 328699079 | 480 | PREDICTED: facilitated trehalose transpo | 0.815 | 0.912 | 0.345 | 7e-75 | |
| 328715719 | 457 | PREDICTED: facilitated trehalose transpo | 0.823 | 0.967 | 0.357 | 2e-74 | |
| 157131260 | 476 | sugar transporter [Aedes aegypti] gi|108 | 0.878 | 0.991 | 0.325 | 1e-69 | |
| 158285602 | 478 | AGAP007483-PA [Anopheles gambiae str. PE | 0.832 | 0.935 | 0.322 | 7e-68 | |
| 157674461 | 494 | putative sugar transporter [Lutzomyia lo | 0.804 | 0.874 | 0.307 | 5e-64 | |
| 312379840 | 515 | hypothetical protein AND_08195 [Anophele | 0.783 | 0.817 | 0.327 | 9e-64 | |
| 157167972 | 455 | sugar transporter [Aedes aegypti] gi|108 | 0.787 | 0.929 | 0.351 | 5e-63 | |
| 170058646 | 420 | solute carrier family 2 [Culex quinquefa | 0.765 | 0.978 | 0.326 | 7e-63 | |
| 170058648 | 474 | conserved hypothetical protein [Culex qu | 0.826 | 0.936 | 0.311 | 1e-62 | |
| 291461587 | 450 | sugar transporter 14 [Nilaparvata lugens | 0.802 | 0.957 | 0.325 | 1e-61 |
| >gi|328699079|ref|XP_001946696.2| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 288 bits (736), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 156/452 (34%), Positives = 260/452 (57%), Gaps = 14/452 (3%)
Query: 71 ACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR 130
A ++ G S W +PVL +L + + + + SW++A++E+GN LSPIP G+LV+
Sbjct: 20 ASLSVMMAGTSLGWPSPVLAKLSNGGLTMAATNEQQSWMIAMLELGNLLSPIPFGVLVDV 79
Query: 131 IGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSI 190
+GRK LL+TGP+ SW++ M S ++ LY +R LQG + I ++P+Y+GEI+ SI
Sbjct: 80 VGRKPCLLLTGPLYIVSWLMVMCSDTIGVLYWVRLLQGACIGIITTVAPIYIGEIAGDSI 139
Query: 191 RGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKN 250
RG + T F + GILY Y +G +SY YSL++P F T +++PESPY+Y +++
Sbjct: 140 RGALSTFFNGMLNAGILYVYCVGPLVSYDALTYYSLLVPCAFLGTCLWIPESPYYYVLRD 199
Query: 251 QEGKAIESLKWLR-NKTADQVQSELQIIKQNTSKNV-ERTNFREFMG-RSNMKAFVFMAF 307
+ KA ES+ WL N D V EL IK ++ ++ + R+ G R + KAF+ +
Sbjct: 200 DDKKAHESVAWLHGNAEPDVVVRELMRIKAEARDDLQDKGSIRDLFGSRCSRKAFLIVQI 259
Query: 308 LAVFRAFTGVQSIIAYANTIFASSET--FLPSDYISILFAIILLVSIFPSTYYIDRAGRR 365
+A +G+ +++AYA++ FA ++T L D ++L +++ + F + Y +D+ GRR
Sbjct: 260 VAAADVLSGMTTVLAYASSTFAHADTDKTLSPDQFTMLLGVLIFCTTFVTGYLVDKLGRR 319
Query: 366 VLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPL 425
L L S GC F + GLYYY + +E +W+PF +I V +++G GPL L
Sbjct: 320 PLLLFSCFGCGAFELVTGLYYYKR-WVGFE-SLGAWIPFTAIGSFAVIYSIGLGPLLPTL 377
Query: 426 LSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLY 485
E F SN++ ++ A+ ++ T + + K++ ++ G++ N+ G L+ + +Y
Sbjct: 378 QGEMFPSNVRGLASAITSVTLTVISFVGLKMYQVITDQWGIHVNYFIYGTGCLMSFLLIY 437
Query: 486 YFLLETKGKTFNEIQYMFKYGKNEYMASLYSQ 517
FL ETKGKTF +IQ NE M ++ +
Sbjct: 438 RFLPETKGKTFAQIQ-------NEIMKTIDDR 462
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328715719|ref|XP_001943565.2| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 159/445 (35%), Positives = 243/445 (54%), Gaps = 3/445 (0%)
Query: 63 LFSFLCVTA-CIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSP 121
L FL TA ++ G+ W++P++EELL +SPIPM+ +E SW V++I+ G L
Sbjct: 7 LRQFLAATAGSLSIMNVGIILGWTSPIMEELLGPDSPIPMTVDETSWFVSVIDWGLILGS 66
Query: 122 IPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMY 181
+P G+L +R GRK SL + GP+ A+W+ +Y + GL +R QG A Y + P+Y
Sbjct: 67 LPFGVLADRWGRKPSLQIIGPMALATWVALLYVDTFQGLLAVRFAQGLLAAGAYTVLPVY 126
Query: 182 LGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPE 241
GEI+ IRG +GT+FQI ++GILY Y G L Y ++ P++F F +PE
Sbjct: 127 AGEIAGPKIRGALGTMFQIMMYVGILYVYAAGMYLDYTRLTYAAMAGPVVFCALFATIPE 186
Query: 242 SPYFYAIKNQEGKAIESLKWLR-NKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNM 299
SP+FY +KN+ A +L WLR + T V E+ + + K + +F E F ++
Sbjct: 187 SPHFYVMKNRLADAKRALVWLRGDDTGSSVDDEMDAVVECICKEMRNASFTELFTDWVSL 246
Query: 300 KAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYI 359
KA + + L+VFR GV ++I+YA+ FA + ++ +S++FA +L S PST
Sbjct: 247 KALIIVQGLSVFRVMAGVTALISYASITFAEMHVAVDANKLSLVFACSVLFSALPSTVLA 306
Query: 360 DRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFG 419
DR GRR L +VS A C F Y+YV Y++ W+ L++ L V LG G
Sbjct: 307 DRVGRRPLMIVSCASCFAFDTAIFAYFYVDRCTTYDVTDYGWLCVLAVGGLSVAHTLGLG 366
Query: 420 PLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLV 479
L + + E F SN ++++ AV I T ++ K++ ++ GMY N+L V S
Sbjct: 367 SLLSTINCELFPSNTRSIANAVNTITLTVASFLALKIYPVLADDGGMYRNYLISSVFSFT 426
Query: 480 CTVYLYYFLLETKGKTFNEIQYMFK 504
+ +L ETKGKTF IQ +
Sbjct: 427 SIISCLLWLPETKGKTFAAIQAQLR 451
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157131260|ref|XP_001655842.1| sugar transporter [Aedes aegypti] gi|108871590|gb|EAT35815.1| AAEL012044-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 160/492 (32%), Positives = 269/492 (54%), Gaps = 20/492 (4%)
Query: 42 GQWNYTADFGSELRYLHTVLFLFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPM 101
G W DFG +Y + L FS +T + A S+ W++P L L +SP+P+
Sbjct: 2 GVWESIKDFG---KYSNQYLAAFSVTLLTLSVIA-----SYGWTSPTLPILQGDDSPLPI 53
Query: 102 SPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLY 161
+ +EGSW+V+I+ + + PIP ++R GRK+++L +WI+ + SV LY
Sbjct: 54 TSDEGSWIVSILVLASIAGPIPTAWSIDRFGRKYTMLFAAIPAIIAWILIGVAESVPVLY 113
Query: 162 VMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNY 221
V R L G S Y P+YLGEI+ IRG+IGTL + GIL Y +G + +
Sbjct: 114 VSRFLSGISYGMSYSSMPIYLGEIASDPIRGSIGTLLTVMAKAGILIEYSIGPFVGFRTL 173
Query: 222 LTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNT 281
SL P F + F++MPESPY+ +N++ A +SL WLR + DQV EL ++K
Sbjct: 174 AWISLAFPTSFFLLFLWMPESPYYLLSQNKDDSAKKSLSWLRKR--DQVTDELAMMKAAV 231
Query: 282 SKNVE-RTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYI 340
++ + + FRE + R N ++ + + L + G Q++IAY+ IF ++ L +
Sbjct: 232 ERSKQNKGTFRELLTRGNARSLIIVLGLGALQQLCGSQAVIAYSQQIFEEVQSGLKAHES 291
Query: 341 SILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTS 400
SI+ A+I L++ S+ +DR GRR L L+S+AGC++ +FI GLY+++ + E+ S
Sbjct: 292 SIIMAVIQLITAACSSSIVDRVGRRPLLLISTAGCAVGTFIVGLYFFLQ-QQGVEVQSVS 350
Query: 401 WVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLM 460
W+P + + L + + +G + +L E F SN+KAV+ A+ ++ +T+G KL+ ++
Sbjct: 351 WIPLVVMMLYIIAYTIGLATVPFAILGELFPSNVKAVAAAMYTMVASTVGFGVAKLYQVI 410
Query: 461 DKHIGMYSNFLFGGVSSLVCTVYLYYFLLETKGKTFNEIQYMFKYGKNEYMASLYSQQPL 520
+G Y +F +SS + ++++ + ETKGK+ +EI + G + L
Sbjct: 411 SDELGTYVSFWIFALSSSLFLIFVFMMVPETKGKSLDEILIEMRGGGQS--------RSL 462
Query: 521 KNGNIQDNKESV 532
K G+ ++SV
Sbjct: 463 KCGSCCGRRKSV 474
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158285602|ref|XP_308390.4| AGAP007483-PA [Anopheles gambiae str. PEST] gi|157020071|gb|EAA04375.4| AGAP007483-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 148/459 (32%), Positives = 249/459 (54%), Gaps = 12/459 (2%)
Query: 42 GQWNYTADFGSELRYLHTVLFLFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPM 101
G W DF +Y + L F+ + +AA S+ W++P L LLS +SP+P+
Sbjct: 2 GVWESVKDF---RKYSNQYLAAFTGTLLMLSVAA-----SYGWTSPTLPLLLSDDSPLPI 53
Query: 102 SPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLY 161
+P+E SW+V+I+ + + P+ L++ GRK +LL+ + WI+ SV LY
Sbjct: 54 TPDESSWIVSILVLTSIAGPVATAWLIDGFGRKVTLLIAVLPSIVGWILIGVGESVTVLY 113
Query: 162 VMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNY 221
+ R L G S Y P+YLGEI+ IRG+IGTL + GIL YV+G + Y
Sbjct: 114 ISRALSGISYGMAYSSMPLYLGEIASDRIRGSIGTLLTVMAKSGILLEYVIGPYVDYRTL 173
Query: 222 LTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNT 281
S+ P F F+++PESPY+ K + +A ++L+WLR A VQ EL++++
Sbjct: 174 AWISVAFPTTFFALFLWLPESPYYLLAKQRNEQAEKNLRWLRR--ASDVQDELRMMQAAV 231
Query: 282 SKNVE-RTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYI 340
++ + R FR+ + R N ++ + + L + G Q++IAY+ IF + L +
Sbjct: 232 ERSQQNRGTFRDLLTRGNRRSLIIILGLGALQQLCGSQAVIAYSQQIFDQVNSGLKAHES 291
Query: 341 SILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTS 400
SI+ A+I LV+ S+ +DR GRR L L+S+ GC++ +FI GLY+++ ++ + ++
Sbjct: 292 SIIMAVIQLVTAALSSSIVDRVGRRPLLLISTVGCAVGTFIVGLYFFL-LQQEVDVEGVG 350
Query: 401 WVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLM 460
W+P I + VF+ +G + +L E F +N+KAV+ A+ + ++G KL+ L+
Sbjct: 351 WIPLAVIMIYIVFYTVGLATVPFAILGEIFPTNVKAVAAAIYTMFAGSVGFGVSKLYQLI 410
Query: 461 DKHIGMYSNFLFGGVSSLVCTVYLYYFLLETKGKTFNEI 499
G Y +F S V+++ + ETKGK ++I
Sbjct: 411 SDEAGTYVSFWIFAACSAAFVVFVFALVPETKGKPLDQI 449
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157674461|gb|ABV60326.1| putative sugar transporter [Lutzomyia longipalpis] | Back alignment and taxonomy information |
|---|
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 244/442 (55%), Gaps = 10/442 (2%)
Query: 69 VTACIAAFTTGMSFAWSAPVLEEL-LSKESPIPMSPNEG-------SWVVAIIEIGNYLS 120
V IA+ G + W++PV ++ S ++ +P +P EG SW+ ++ +G ++
Sbjct: 42 VVVNIASLALGTTLGWTSPVFPKINYSNDTAVPDTPLEGLPTADELSWIGSLAALGALIA 101
Query: 121 PIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPM 180
P AG L ++IGRKW+LL + SWI+ + + ++ +YV R QGF + + + M
Sbjct: 102 PFIAGPLADKIGRKWTLLSSTGFFAISWILLVTTNNIPQMYVARLFQGFGVGFVMTVQTM 161
Query: 181 YLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMP 240
Y+GEIS RG +G+ Q+ GILY Y +G +SY+ LI P+ F F FMP
Sbjct: 162 YIGEISSDQFRGALGSFMQLFIVTGILYVYAMGPFVSYVQLQWICLIPPLAFAAGFFFMP 221
Query: 241 ESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVE-RTNFREFMG-RSN 298
E+PY+Y K + A++SL++LR K+A+ VQ E I++ + ++ + ++ +G + N
Sbjct: 222 ETPYYYTGKGDKTNAVKSLQFLRGKSAEGVQEEALKIQEAVEEAMKNKGTIKDLVGNKGN 281
Query: 299 MKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYY 358
+KA + A L F+ +G+ ++ Y+ IFA + + L +I+ I+ +++ +
Sbjct: 282 LKALIICAGLISFQQLSGINVVLFYSQIIFAKTGSSLEPAIATIIVGIVQVIASGLTPLV 341
Query: 359 IDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGF 418
+DR GR+++ LVS AG ++ + GLY+++ + +P W+P LS+ + +GF
Sbjct: 342 VDRLGRKIILLVSGAGMAVCHALLGLYFFLDYQKSDVVPSIGWLPILSVIGFVSVYCIGF 401
Query: 419 GPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSL 478
GPL +L E F +N+K+++ +++ C LG + K F MD+ +G + F G+
Sbjct: 402 GPLPWAVLGEMFPANVKSIASSIVASTCWVLGFLVTKYFSAMDEALGSHWAFWIFGIFCC 461
Query: 479 VCTVYLYYFLLETKGKTFNEIQ 500
+ + ++ETKG + EIQ
Sbjct: 462 GAFAFTFTIVMETKGLSLQEIQ 483
|
Source: Lutzomyia longipalpis Species: Lutzomyia longipalpis Genus: Lutzomyia Family: Psychodidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|312379840|gb|EFR26000.1| hypothetical protein AND_08195 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
Score = 251 bits (640), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 139/425 (32%), Positives = 235/425 (55%), Gaps = 4/425 (0%)
Query: 76 FTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKW 135
+ S+ W++P L LL+ +SP+P++P+E SWVV+I+ + + P+ + L+++ GRK
Sbjct: 61 LSVAASYGWTSPTLPRLLADDSPLPLTPDESSWVVSILVLTSIAGPVLSAWLIDKFGRKL 120
Query: 136 SLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIG 195
+LL+ + WI+ SV L+V R L G S Y P+YLGEI+ IRG+IG
Sbjct: 121 TLLLAVLPSIVGWILIGVGESVAVLFVSRALSGISYGMAYSSMPLYLGEIASDRIRGSIG 180
Query: 196 TLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKA 255
TL + GIL Y +G + Y S+ P+ F F+++PESPY+ K Q +A
Sbjct: 181 TLLTVMAKTGILLEYAIGPYVGYTTLAWISIAFPVTFFALFLWLPESPYYLLGKQQTEQA 240
Query: 256 IESLKWLRNKTADQVQSELQIIKQNTSKNVE-RTNFREFMGRSNMKAFVFMAFLAVFRAF 314
++L+WLR A V++EL +++ ++ R FR+ + R N ++ + + L +
Sbjct: 241 EQNLRWLRR--ASDVRTELAMMQAAVERSKHNRGTFRDLLNRGNRRSLIIIMGLGALQQL 298
Query: 315 TGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAG 374
G Q++IAY+ IF L + SI+ A+I LV+ S+ +DR GRR L L S+ G
Sbjct: 299 CGSQAVIAYSQQIFDQVNIGLKAHESSIIMAVIQLVTAALSSSIVDRVGRRPLLLFSTVG 358
Query: 375 CSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNM 434
C++ +FI GLY+++ + + ++ W+P + I L V + +G + +L E F +N+
Sbjct: 359 CAIGTFIVGLYFFLD-QQEVDLDGIGWIPLVVIMLYIVCYTIGLATVPFAILGEIFPANV 417
Query: 435 KAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFLLETKGK 494
KAV+ A+ + ++G KL+ L+ G Y +F S V+++ F+ ETKGK
Sbjct: 418 KAVAAALYTMFAGSVGFGVSKLYQLISDEAGTYVSFWIFAAFSAGFVVFVFAFVPETKGK 477
Query: 495 TFNEI 499
++I
Sbjct: 478 PLDQI 482
|
Source: Anopheles darlingi Species: Anopheles darlingi Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157167972|ref|XP_001663028.1| sugar transporter [Aedes aegypti] gi|108870672|gb|EAT34897.1| AAEL012903-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 154/438 (35%), Positives = 244/438 (55%), Gaps = 15/438 (3%)
Query: 69 VTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLV 128
+ A ++ T M+ AWS+P + +L +++SPIP++ +EGSWVVAI IG PI G+ V
Sbjct: 18 LAATLSIMMTVMTNAWSSPAIVKLEAEDSPIPITEDEGSWVVAIQAIGGIFGPIITGVAV 77
Query: 129 NRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISET 188
+RIGRKW+LL T WI+ SV LY R L G S Y +SP+YLGEI+
Sbjct: 78 DRIGRKWTLLSAAIPTIIGWILIGLGDSVGYLYAARFLFGVSYGTTYSVSPIYLGEITSD 137
Query: 189 SIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAI 248
+IRG+ GT+ I +G L Y +G L Y S+I P +F ++FM+MPE+PY+
Sbjct: 138 AIRGSSGTMITILARIGFLLMYSIGPYLEYRTLAWVSMIGPALFVLSFMWMPETPYYLIG 197
Query: 249 KNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSK-NVERTNFREFMG---RSNMKAFVF 304
KN+ +A +SL W R T ++ E++ +K + K N ++T+ R+NM+
Sbjct: 198 KNKHKQAEKSLSWFRRTT--KISEEMEAMKSSVEKSNQDKTSLSVLFTPAYRNNMR---- 251
Query: 305 MAFLAVFR-AFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAG 363
+ F+ VF FTG+ +I+ YA TIF T L + +SI+ + LV++ + +DR G
Sbjct: 252 IVFVLVFSMQFTGILAILGYAQTIFGKISTSLKPEEMSIVLGAVQLVAVIFPAFLVDRMG 311
Query: 364 RRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFT 423
RR L L+S+ G +L + +Y+ + + Y+ W+ F++I VF+ LG +
Sbjct: 312 RRPLLLLSAVGTTLSLLVCSIYFAIAGD-NYQ-GSLGWIAFIAILFYIVFYGLGLATVSF 369
Query: 424 PLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNF-LFGGVSSLVCTV 482
+L+E F N++A + A +I L K F + ++G Y F LF ++ C V
Sbjct: 370 AVLTEIFPKNIRAYANATFSIASAILIFGIVKAFQVTLDNVGAYLPFGLFALCEAIGC-V 428
Query: 483 YLYYFLLETKGKTFNEIQ 500
+Y ++ ETKGK+ +E+Q
Sbjct: 429 LIYLYIPETKGKSLDEVQ 446
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170058646|ref|XP_001865010.1| solute carrier family 2 [Culex quinquefasciatus] gi|167877686|gb|EDS41069.1| solute carrier family 2 [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 138/423 (32%), Positives = 231/423 (54%), Gaps = 12/423 (2%)
Query: 44 WNYTADFGSELRYLHTVLFLFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSP 103
W+ DF +Y + L F+ +T + A S+ W++P L LL+ +SP+P++P
Sbjct: 4 WDSIKDFR---KYSNQYLAAFTVTLLTLSVIA-----SYGWTSPTLPILLAPDSPLPITP 55
Query: 104 NEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVM 163
+E SW+V+I+ + + P+P V++ GRK+++L W++ ++SV LYV
Sbjct: 56 DESSWIVSILVLASIAGPVPTAWSVDKFGRKYTMLFAALPAIIGWVLIGVAQSVEVLYVS 115
Query: 164 RTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLT 223
R L G S Y P+YLGEI+ IRG+IGTL + GIL Y +G + +
Sbjct: 116 RLLSGLSYGMAYSSMPLYLGEIASDPIRGSIGTLLTVMAKAGILIEYSIGPFVDFRTLAW 175
Query: 224 YSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSK 283
S+ P F + FM+MPESPYF K + A ESL+WLR + D+V EL ++K +
Sbjct: 176 ISIAFPSAFFLLFMWMPESPYFLLAKEKNDSAKESLQWLRKR--DEVTDELAMMKAAVDR 233
Query: 284 NVE-RTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISI 342
+ + + RE + N ++ + L + G Q++IAY+ IF ++ L + SI
Sbjct: 234 SKQNKGTLRELFTKGNRRSLTIVLGLGALQQLCGSQAVIAYSQQIFEEVQSGLEAHESSI 293
Query: 343 LFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWV 402
+ A+I LV+ S+ +DR GRR L L+S+AGC++ +F+ GLY+++ + + SW+
Sbjct: 294 IMAVIQLVTAALSSSVVDRVGRRPLLLISTAGCAIGTFVVGLYFFLQ-QQGVAVQSVSWI 352
Query: 403 PFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 462
P + + L V + +G + +L E F SN+KAV+ A+ + + +G KL+ ++
Sbjct: 353 PLVVMMLYIVSYTIGLATVPFAILGELFPSNVKAVAAAMYTMFASAVGFGVAKLYQVISD 412
Query: 463 HIG 465
IG
Sbjct: 413 EIG 415
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170058648|ref|XP_001865011.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167877687|gb|EDS41070.1| conserved hypothetical protein [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 144/462 (31%), Positives = 246/462 (53%), Gaps = 18/462 (3%)
Query: 68 CVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGML 127
+TA ++ T + WS+P + L ++SP+P++ ++GSW+V+I+ IG++ PI G++
Sbjct: 20 ALTATLSLVATVAAAGWSSPAIPALKREDSPVPITADQGSWIVSILSIGSFFGPIITGLV 79
Query: 128 VNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISE 187
V+ GRK +LL++ WII + +V +Y+ R LQG S +Y ++P+YLGEIS
Sbjct: 80 VDVHGRKLTLLLSVIPLLVGWIIIGLASNVPMIYLARFLQGISYGTVYSVTPIYLGEISS 139
Query: 188 TSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYA 247
IRG+ G L + L L Y +G +++ SL PI F TF++MPE+PY+
Sbjct: 140 NVIRGSTGVLVTVMAKLAFLLEYSIGPFVTFRALSWISLCFPIAFLATFLWMPETPYYLL 199
Query: 248 IKNQEGKAIESLKWLR---------NKTADQVQSELQIIKQNTSKNVERTNFREFMGRSN 298
+ + A+ SL+WLR NK Q++S ++ KQN +T+ +SN
Sbjct: 200 AQGNDKAAMNSLRWLRRLDDNSIELNKEFQQMKSLIEKQKQN------QTSMGALFAKSN 253
Query: 299 MKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYY 358
K V + L+ TG+ +I+ Y+ TIF+ + L + +SI+ A++ L+++ T+
Sbjct: 254 RKCLVIILLLSCGMQLTGINAILGYSQTIFSKLDMDLKAAELSIIMAVVQLIAVIIPTFV 313
Query: 359 IDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGF 418
+D+AGRR L +SS G S+ + ++ L Y + SWVPF+ + F +G
Sbjct: 314 VDKAGRRPLLFISSGG-SVLGLVTCSVFFTMDTLGYPVEEFSWVPFVGTLFFIISFAVGL 372
Query: 419 GPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSL 478
+ +L E F ++KA + AV ++ + + KLF ++ G Y +F + +
Sbjct: 373 ATVPFAILGEVFPKHIKANANAVFAMITSVVVFAVVKLFQVISDGAGTYVSFWIFSLCTT 432
Query: 479 VCTVYLYYFLLETKGKTFNEIQYMFKYGKNEYMASLYSQQPL 520
V +Y+F+ ETKGK+F IQ M E+ + + PL
Sbjct: 433 CTGVLIYFFIPETKGKSFEVIQEMM--AMKEFKSQSTKRTPL 472
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|291461587|dbj|BAI83428.1| sugar transporter 14 [Nilaparvata lugens] | Back alignment and taxonomy information |
|---|
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/442 (32%), Positives = 253/442 (57%), Gaps = 11/442 (2%)
Query: 69 VTACIAAFTTGMSFAWSAPVLEEL-LSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGML 127
V+ACI F TG AW +P L +L + + + + +E SWVVA +++GN +SPIPA L
Sbjct: 11 VSACICMFVTGCWLAWPSPALRKLEVQGGANVFIEGDEISWVVASLDVGNMVSPIPASYL 70
Query: 128 VNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISE 187
V+RIGRK LL TGP+ W++ + L++ R L G + I PMYLGEI+
Sbjct: 71 VDRIGRKPVLLATGPLYLICWMLTFVPGTPYFLFLSRFLSGIGKGIAFSICPMYLGEIAS 130
Query: 188 TSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYA 247
+RG I T+ + G L +++G +SY T I PIIF +TF+++PESPY
Sbjct: 131 VEVRGAISTISTGALWGGSLLMFIVGPLVSYQWLNTIGAIFPIIFFMTFLWIPESPYGCL 190
Query: 248 IKNQEGKAIESLKWLRNKTADQ--VQSELQIIKQNTSKNVE-RTNFREFMG-RSNMKAFV 303
++N+ +A +SL+WLR + ADQ ++ EL+ +K+N + ++ + F + + SN KA
Sbjct: 191 MRNKVEEARKSLQWLR-EGADQLTIEKELEQMKENVEEEMKTKGTFVDLVAIPSNRKATT 249
Query: 304 FMAFLAVFRAFTGVQSIIAYANTIFASSE-TFLPSDYISILFAIILLVSIFPSTYYIDRA 362
+ + F+ G+ +++A+++T + F + ++F I+L + F +T +D
Sbjct: 250 IVMVSSAFQRLCGISAVLAFSSTTLPNVGFQFFHVSQVIVVFGIVLTIGNFLATPLVDHL 309
Query: 363 GRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLF 422
GR+ L SS G ++ + +G YY L+ + +W+P++++ G+F ++G G +
Sbjct: 310 GRKPLLFASSIGLAISTATSGFYYL----LRKDPEQAAWLPYMALVCFGIFHSIGLGVIP 365
Query: 423 TPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTV 482
+ LLSE F +N+K+ + AV +I+ ++ K++ + IG ++ F F +++++ T+
Sbjct: 366 STLLSELFPANVKSRAAAVSSIVFAAASFVTNKMYHPVQHSIGTHAMFFFFSMNAVIFTI 425
Query: 483 YLYYFLLETKGKTFNEIQYMFK 504
+ F+ ETKGK+F +IQ K
Sbjct: 426 FNALFIFETKGKSFPDIQKRLK 447
|
Source: Nilaparvata lugens Species: Nilaparvata lugens Genus: Nilaparvata Family: Delphacidae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 537 | ||||||
| FB|FBgn0037387 | 491 | CG1213 [Drosophila melanogaste | 0.800 | 0.875 | 0.307 | 1.5e-60 | |
| FB|FBgn0036316 | 539 | CG10960 [Drosophila melanogast | 0.897 | 0.894 | 0.281 | 4e-58 | |
| FB|FBgn0034247 | 465 | CG6484 [Drosophila melanogaste | 0.815 | 0.941 | 0.291 | 1.2e-56 | |
| FB|FBgn0037386 | 502 | CG1208 [Drosophila melanogaste | 0.739 | 0.790 | 0.316 | 1.8e-52 | |
| FB|FBgn0028560 | 444 | sut4 "sugar transporter 4" [Dr | 0.793 | 0.959 | 0.300 | 4e-51 | |
| UNIPROTKB|B0WC46 | 517 | Tret1 "Facilitated trehalose t | 0.834 | 0.866 | 0.253 | 3e-46 | |
| UNIPROTKB|A5LGM7 | 504 | Tret1 "Facilitated trehalose t | 0.877 | 0.934 | 0.256 | 6.2e-46 | |
| FB|FBgn0053282 | 460 | CG33282 [Drosophila melanogast | 0.785 | 0.917 | 0.271 | 7.9e-46 | |
| UNIPROTKB|Q17NV8 | 806 | Tret1 "Facilitated trehalose t | 0.834 | 0.555 | 0.253 | 7.9e-46 | |
| FB|FBgn0031522 | 466 | CG3285 [Drosophila melanogaste | 0.774 | 0.892 | 0.266 | 3.4e-45 |
| FB|FBgn0037387 CG1213 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 135/439 (30%), Positives = 246/439 (56%)
Query: 69 VTACIAAFTTGMSFAWSAPVLEELLSKE---SPI--PMSPNEGSWVVAIIEIGNYLSPIP 123
V A ++AF G + W++P+ +L S++ SP+ P++ +E +W+ ++I +G ++P
Sbjct: 47 VAANLSAFVVGTTLGWTSPIGPKLKSEDTSDSPLSRPITSDEDAWISSLIAVGALVAPFV 106
Query: 124 AGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLG 183
AG + +RIGRKW LL + ++ + M + V LY+ R +QGF + + + PMY+G
Sbjct: 107 AGPMADRIGRKWVLLSSSLFFVLAFGLNMVASEVWILYMSRLIQGFGVGFVMTVQPMYVG 166
Query: 184 EISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESP 243
EIS ++RG G+L Q+ GILY Y +G +SY +++P++F + F MPESP
Sbjct: 167 EISTDNVRGATGSLMQLFIVGGILYVYAIGPYVSYQALQWCCIVVPVVFDLVFYMMPESP 226
Query: 244 YFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNV--ERTNFREFMGRSNMKA 301
YF+A K ++ +A++SL++LR ++A+ V E+ I+ N + + + T F N +A
Sbjct: 227 YFFAGKGRKSEALKSLQFLRGQSAEGVHDEMAEIQANVEEAMASKGTVMDLFKNAGNRRA 286
Query: 302 FVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDR 361
A L F+ +G+ ++ + +IFAS+ T L +I+ + + S + DR
Sbjct: 287 LFICAGLISFQQLSGINVVLFNSQSIFASANTGLDPAIATIIIGCVQVGSSALTPLVADR 346
Query: 362 AGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPL 421
GR+V+ L SS+ S+ G ++Y+ + ++ +I W+P ++ + + + GFGPL
Sbjct: 347 LGRKVMLLTSSSVMSIGLAALGAFFYMQL-VKGDISSVVWMPVPALIIYNIVYCTGFGPL 405
Query: 422 FTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCT 481
+L E F +N+K+V+ +V+ C TLG + + +D +G Y F V +V
Sbjct: 406 PWAVLGEMFPANIKSVASSVVASTCWTLGFLVTFFYPSLDA-LGSYYAFWLFAVCMVVAF 464
Query: 482 VYLYYFLLETKGKTFNEIQ 500
++ + ++ETKG + +IQ
Sbjct: 465 FFVLFVVMETKGLSLQQIQ 483
|
|
| FB|FBgn0036316 CG10960 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 139/494 (28%), Positives = 251/494 (50%)
Query: 11 KYCNSIDSVRAVEGVQGANNSMIPPNIQQNNGQWNYTADFGSELRYLHTVLFLFSFLCVT 70
KY S V+ V+ S P + + G +T+ + ++ V L
Sbjct: 37 KY-GSRQPVKIVKASDNGRTSSTPHDQENLLGNMVHTSTSNNSQKWPQYVAAL------A 89
Query: 71 ACIAAFTTGMSFAWSAPVLEELLSKES--PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLV 128
A AF G W++P E++ + P+ ++ SWV + + +G IP G L+
Sbjct: 90 AAGGAFAAGTVLGWTSPAETEIVDRGEGYDFPVDKDQFSWVGSAMTLGAACVCIPIGFLI 149
Query: 129 NRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISET 188
N IGRKW++L W + +++ +V LY R + G + A V +PMY GEI++
Sbjct: 150 NMIGRKWTMLFLVLPFILGWTMLIWAVNVSMLYASRFILGIAGGAFCVTAPMYTGEIAQK 209
Query: 189 SIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAI 248
IRGT+G+ FQ+ +GIL+ Y +G+ + I+P+IF F FMPESP +
Sbjct: 210 EIRGTLGSFFQLMITIGILFVYAVGAGVKIFWLSIICGILPLIFGAIFFFMPESPTYLVS 269
Query: 249 KNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRS-NMKAFVFMAF 307
K++ AI+S++WLR K D ++ + + + N + R KA
Sbjct: 270 KDRSENAIKSIQWLRGKEYDYEPELAELRETDRETKANKVNVWAALNRPVTRKALAISMG 329
Query: 308 LAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVL 367
L F+ G+ ++I YA+ IF + T + +++ +IL I+ +V+ F ST +D+ GRR+L
Sbjct: 330 LMFFQQVCGINAVIFYASRIFLEANTGIEAEWATILIGIMQVVATFVSTLVVDKLGRRIL 389
Query: 368 FLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLS 427
L S ++ + G+Y+++ + ++ W+P S+ L + F++G+GP+ ++
Sbjct: 390 LLASGISMAISTTAIGVYFFLQKQDAAQVVSLGWLPVASLCLFIIMFSIGYGPVPWLMMG 449
Query: 428 EYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNF-LFGGVSSLVCTVYLYY 486
E F++++K + ++ L + K F ++ +G+ F LF G++ +V +++Y+
Sbjct: 450 ELFATDIKGFAGSLAGTSNWLLAFVVTKTFVNLNDGLGIGGTFWLFAGLT-VVGVIFVYF 508
Query: 487 FLLETKGKTFNEIQ 500
+ ETKGK+ NEIQ
Sbjct: 509 AVPETKGKSLNEIQ 522
|
|
| FB|FBgn0034247 CG6484 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 129/443 (29%), Positives = 237/443 (53%)
Query: 69 VTACIAAFTTGMSFAWSAPVLEEL-LSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGML 127
++A A G S WS+PV + ++ E P+S ++ WV +++ +G + IP G
Sbjct: 14 LSASFGALCMGASIGWSSPVENMITVNTEYGFPISSSQFGWVSSLLTLGATVICIPIGFA 73
Query: 128 VNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISE 187
++ IGR+ ++L P W++ +++++V LY R + G A V +PMY EI+
Sbjct: 74 IDWIGRRPTMLALIPPYMVGWVLMLFAKNVTMLYFGRFILGMCGGAFCVTAPMYCTEITA 133
Query: 188 TSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYA 247
T++RGTIG+ FQ+ G+LY Y++G+ L + I+P+IF + FMPESP + A
Sbjct: 134 TALRGTIGSFFQLLIVSGVLYGYLVGAFLPLLTINILCAILPVIFAIIHFFMPESPVYLA 193
Query: 248 IKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVE--RTNFREFMGRSN-MKAFVF 304
+K + A ++L+WLR K AD + EL+ I + + K ++ + N + R +K
Sbjct: 194 MKGRNDDAAKALQWLRGKDAD-IDDELKEILEESQKQIDMPQVNILSSLRRPIVLKGLGI 252
Query: 305 MAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGR 364
L VF+ +TG+ +++ Y+ +IF + + + +++ + + S + ID+AGR
Sbjct: 253 AVLLQVFQQWTGINAVLFYSASIFEDTGSDISGSDATLIIGVTQVTSTLVAVAIIDKAGR 312
Query: 365 RVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTP 424
R+L L+S ++ + + G+Y+ + + W+P SI + +FF++GFGP+
Sbjct: 313 RILLLISGVLMAVSTALMGVYFQLKENDPASMDNFGWLPISSICIFIIFFSIGFGPVPWL 372
Query: 425 LLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYL 484
+++E FS ++K+V+ ++ + LF ++ IG F +++ Y
Sbjct: 373 VMAELFSEDVKSVAGSIAGTSNWLSAFVVTLLFPILKSSIGPGPTFWIFTAIAVIAFFYS 432
Query: 485 YYFLLETKGKTFNEIQYMFKYGK 507
+F+ ETKGKT EIQ + GK
Sbjct: 433 LFFVPETKGKTIIEIQDLLSGGK 455
|
|
| FB|FBgn0037386 CG1208 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 513 (185.6 bits), Expect = 1.8e-52, Sum P(2) = 1.8e-52
Identities = 131/414 (31%), Positives = 233/414 (56%)
Query: 94 SKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWS-LLMTGPITTASWIIAM 152
S E+ I ++ ++ + V +++ G +P+G + +RIGR+++ ++M P A WI
Sbjct: 93 SNENDIRLTDSQKTLVGSMLPFGALFGALPSGYIADRIGRRYTAMVMDIPFILA-WITLS 151
Query: 153 YSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVL 212
++ SV LY+ R L G + + V++PMY+ EI+ETSIRG++GTLFQ+ +GIL+ YV+
Sbjct: 152 FANSVGWLYLGRFLIGIATGSFCVVAPMYISEIAETSIRGSLGTLFQLLLTIGILFIYVV 211
Query: 213 GSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKN-QEGKAIESLKWLRNKTADQVQ 271
G+ +S+ LIIPI+ V +PE+P Y +KN + +A +LKWL +
Sbjct: 212 GALVSWKTLSLLCLIIPILLLVGLFIVPETPV-YLLKNGKRSEANRALKWLWGDYCN-TS 269
Query: 272 SELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS 330
+ +Q I+ + + + ++ F R++ V L VF+ F+G+ ++I + N IF S
Sbjct: 270 NAIQAIQNDLDQTGVDASVKDLFSNRASRNGMVISVLLMVFQQFSGINAVIFFMNEIFES 329
Query: 331 SETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTI 390
S T P+ +I+ ++ ++ S+ I++AGR++L + SS ++ + G Y TI
Sbjct: 330 SSTLNPN-VCTIVVGVVQVIMTLASSLLIEKAGRKILLIFSSTIMTVCLAMLGAYN--TI 386
Query: 391 ELQYEIPYT-SWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMK--AVSCAVI-NILC 446
++ + W+P L I L V F++G+GP+ ++ E F ++K AVS +V+ N +C
Sbjct: 387 NRHTDLSQSIGWLPLLCIVLFIVSFSVGYGPIPWMMMGELFMPDVKGIAVSLSVMMNWVC 446
Query: 447 TTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFLLETKGKTFNEIQ 500
+L +++ LF +++ G F F V T Y+ L ETKGK+ ++IQ
Sbjct: 447 VSL--VTW-LFGVLNAG-GADVPFWFFSAWMGVATAYVAIALQETKGKSASQIQ 496
|
|
| FB|FBgn0028560 sut4 "sugar transporter 4" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 133/443 (30%), Positives = 233/443 (52%)
Query: 62 FLFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSW--VVAIIEIGNYL 119
F+ F+ + AF G WS PV E+ + + +P + W V +++ +G
Sbjct: 7 FIVGFI---GALGAFCLGAVIGWSGPVENEVKNSNA-YNFTPRQTEWGLVGSLMTLGAAF 62
Query: 120 SPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISP 179
S IP G+L+ +IGRK ++L+ P W++ + + + L + R + GF A V P
Sbjct: 63 SCIPVGVLIGKIGRKTTMLILLPPFFIGWLLILLASHIAMLLLGRFVVGFCGGAFCVTCP 122
Query: 180 MYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFM 239
MY+ EI++ RGT+G FQ+ GILY +V+G + + I+P+IF V +FM
Sbjct: 123 MYVTEIAQVQYRGTMGCFFQLLIVFGILYAFVVGGFVKTFYFNIACAILPVIFFVLMIFM 182
Query: 240 PESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRS-N 298
PESP F A K + KA +SLK+LR K AD V EL+ + K E+ + + + R
Sbjct: 183 PESPIFLAQKGKAEKAEKSLKFLRGKDAD-VSGELKEMSAEGQK--EKASVGKILCRRIT 239
Query: 299 MKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYY 358
+K L +F+ TG+ +II Y+ IF ++ + L +I+ I+ ++ S
Sbjct: 240 LKGLFLSIGLMLFQQMTGINAIIFYSTFIFETAGSTLEPRISTIIVGIVQAIATIISILV 299
Query: 359 IDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGF 418
I++ GR++L LVS+ + + I LY+ + ++ W+ +++ + + F+LGF
Sbjct: 300 IEKVGRKILLLVSACMMGISTLIMALYFGMLMKSG-----VGWLALIAVCVFIIGFSLGF 354
Query: 419 GPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNF-LFGGVSS 477
GP+ +++E F+ ++KA++ ++ I LF +++ IG + F +F G +
Sbjct: 355 GPVPWLMMAELFAEDVKALAGSIAGTTNWCFAFIVTLLFPVLNDIIGATACFAIFFGFA- 413
Query: 478 LVCTVYLYYFLLETKGKTFNEIQ 500
+ V++ + + ETKGKT NEIQ
Sbjct: 414 VAAFVFILFLIPETKGKTLNEIQ 436
|
|
| UNIPROTKB|B0WC46 Tret1 "Facilitated trehalose transporter Tret1" [Culex quinquefasciatus (taxid:7176)] | Back alignment and assigned GO terms |
|---|
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 116/457 (25%), Positives = 231/457 (50%)
Query: 69 VTACIAAFTTGMSFAWSAPVLEELLSKE-SPIPMSPNEGSWVVAIIEIGNYLSPIPAGML 127
++ + + G S A+++P L + + + ++ GSWV I+ + + I G L
Sbjct: 61 LSVSLGSMVVGFSSAYTSPALVSMKDRNITSFEVTDQSGSWVGGIMPLAGLVGGILGGPL 120
Query: 128 VNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISE 187
+ +GRK ++L T SW++ + V + V R L GFS+ + P+YLGE +
Sbjct: 121 IEYLGRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSLPVYLGETVQ 180
Query: 188 TSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYA 247
+RGT+G L ++GIL +V G+ + + +P+ F + +PE+P +Y
Sbjct: 181 PEVRGTLGLLPTAFGNIGILLCFVAGNYMDWSELAFLGATLPVPFLILMFLIPETPRWYV 240
Query: 248 IKNQEGKAIESLKWLRNKTADQVQSELQ-IIK--QNTSKNVERTNFREFMGRSNMKAFVF 304
+ ++ +A ++L+WLR K AD V EL+ IIK Q+ ++ ++ + + ++N+K +
Sbjct: 241 SRGRDDRARKALQWLRGKKAD-VDPELKGIIKSHQDAERHASQSAMLDLLKKTNLKPLLI 299
Query: 305 MAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGR 364
L F+ +G+ ++I Y IF + + + + +I+ ++ ++ F +T IDR GR
Sbjct: 300 SLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDENLCTIIVGVVNFIATFIATLLIDRLGR 359
Query: 365 RVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTP 424
++L +S + G ++YV ++ + W+P S + + F+LGFGP+
Sbjct: 360 KMLLYISDIAMIITLMTLGGFFYVKNN-GGDVSHIGWLPLASFVIFVLGFSLGFGPIPWL 418
Query: 425 LLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNF-LFGGVSSLVCTVY 483
++ E ++ + +V + + K F + IG + F +FG V +V V+
Sbjct: 419 MMGEILPGKIRGSAASVATAFNWSCTFVVTKTFADIIASIGTHGAFWMFGSVC-VVGLVF 477
Query: 484 LYYFLLETKGKTFNEIQYMFKYGKNEYMASLYSQQPL 520
+ ++ ET+GK+ +I+ G+ M+S+ + +PL
Sbjct: 478 VIMYVPETQGKSLEDIERKM-CGRVRRMSSVANIKPL 513
|
|
| UNIPROTKB|A5LGM7 Tret1 "Facilitated trehalose transporter Tret1" [Polypedilum vanderplanki (taxid:319348)] | Back alignment and assigned GO terms |
|---|
Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 124/483 (25%), Positives = 236/483 (48%)
Query: 47 TADFGSELR-YLHTVLFLFSFLCVTACIA----AFTTGMSFAWSAPVLEELLSKE-SPIP 100
T D ++L Y T ++ + + A IA + G + A+++P L + + +
Sbjct: 21 TEDGKAKLEIYRPTTNPIYIYTQILAAIAVSMGSMVVGFASAYTSPALVSMQNTTITSFK 80
Query: 101 MSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGL 160
++ E SWV I+ + I G + +GRK ++L T +W++ ++ S+ +
Sbjct: 81 VTEQEASWVGGIMPLAGLAGGIAGGPFIEYLGRKNTILATAVPFIVAWLLIAFANSIWMV 140
Query: 161 YVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMN 220
R L GF + + P+YLGE + +RGT+G L ++GIL +V G +++
Sbjct: 141 LAGRALSGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILICFVAGKYVNWSG 200
Query: 221 YLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQ-IIKQ 279
I+PI F V + +PE+P ++ + +E +A ++L+WLR K AD V+ EL+ I+K
Sbjct: 201 LAFIGSILPIPFMVLTLLIPETPRWFVTRGREERARKALQWLRGKKAD-VEPELKGIVKS 259
Query: 280 N--TSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPS 337
+ ++ + + M RSN+K + L F+ +G+ ++I Y +IF + + +
Sbjct: 260 HCEAERHASQNAIFDLMKRSNLKPLLIALGLMFFQQLSGINAVIFYTVSIFKDAGSTIDE 319
Query: 338 DYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIP 397
+ +I+ ++ + F +T IDR GR++L +S + G ++Y ++
Sbjct: 320 NLCTIIVGVVNFGATFFATVLIDRLGRKILLYISEVAMVITLLTLGTFFYYK-NSGNDVS 378
Query: 398 YTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLF 457
W+P S + + F+ G GP+ +L E ++ + +V T I K F
Sbjct: 379 NIGWLPLASFVIYVIGFSSGVGPIPWLMLGEILPGKIRGSAASVATGFNWTCTFIVTKTF 438
Query: 458 FLMDKHIGMYSNFLFGGVSSLVCTVYLYYFLLETKGKTFNEIQYMFKYGKNEYMASLYSQ 517
+ IG + F F GV L+ ++ +F+ ET+GK+ EI+ G+ M+S+ +
Sbjct: 439 ADIVAAIGNHGAFWFFGVICLIGLFFVIFFVPETQGKSLEEIERKMM-GRVRRMSSVANM 497
Query: 518 QPL 520
+PL
Sbjct: 498 KPL 500
|
|
| FB|FBgn0053282 CG33282 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 119/438 (27%), Positives = 232/438 (52%)
Query: 73 IAAFTTGMSFAWSAPVLEELLSKESPIPMSPN--EGSWVVAIIEIGNYLSPIPAGMLVNR 130
I F G+ W +P L ++ + +SP+ N + SW+ +++ + + + ML+ R
Sbjct: 26 IITFGHGVGVGWLSPTLTKIQTADSPLDFEVNLAQISWLGSMLGLDSLCGNLTIAMLIER 85
Query: 131 IGRKWSL-LMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETS 189
GRK+ L LM GP WI+ + +V LY R L GF+ A Y++ P+++ E+++++
Sbjct: 86 AGRKFCLYLMAGPYACI-WILIYCASNVYYLYAARFLCGFTGGAGYLVVPIFISEVADSN 144
Query: 190 IRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIK 249
IRG + ++ +S LGIL Y+L + L+Y ++I+P+ + + + +PE+ + K
Sbjct: 145 IRGALTSMVMLSVDLGILAGYILSTYLAYHVVPFLAIILPVAYFIANIMLPETAPYLLKK 204
Query: 250 NQEGKAIESLKWLRNKTA---DQVQS----ELQ--IIKQNTSKNVERTNFREFMGRSNMK 300
+Q A S ++ RN+ + +Q EL+ ++ Q T +N ++++ + +K
Sbjct: 205 SQLAAAENSFRYYRNQRSAICEQTSKVNFEELRTAVLSQQT-RNATPLSYKDLTTKPALK 263
Query: 301 AFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYID 360
F L++ F+GV S I Y + IF +S + + + +I+ ++ +V ++ ST +D
Sbjct: 264 GFAASIVLSLGYQFSGVFSFINYMSDIFKASGSVVDVNTATIIIGLVQIVGVYTSTILVD 323
Query: 361 RAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGP 420
GRRVL L+S+ G + G + Y+ ++ Y++ +W+P + + ++ N+G
Sbjct: 324 IVGRRVLMLISTMGVGIGCIAFGCFTYLA-KI-YDLSDFNWLPLVLMIIICYVANIGLIG 381
Query: 421 LFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVC 480
+F +L E F +++++ ++ I + L + KLF LM + G+ F S+L+
Sbjct: 382 IFFLVLVELFPVKIRSLATSLSVIFLSLLVFGTLKLFPLMLHYWGISFTMWFSAASALLT 441
Query: 481 TVYLYYFLLETKGKTFNE 498
Y + FL ETKGK+ E
Sbjct: 442 FFYFWLFLQETKGKSMIE 459
|
|
| UNIPROTKB|Q17NV8 Tret1 "Facilitated trehalose transporter Tret1" [Aedes aegypti (taxid:7159)] | Back alignment and assigned GO terms |
|---|
Score = 487 (176.5 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 116/457 (25%), Positives = 229/457 (50%)
Query: 69 VTACIAAFTTGMSFAWSAPVLEELLSKE-SPIPMSPNEGSWVVAIIEIGNYLSPIPAGML 127
++ + + G S A+++P L + + + ++ GSWV I+ + I G L
Sbjct: 350 LSVSLGSMVVGFSSAYTSPALVSMKDRNITSFEVTDQSGSWVGGIMPLAGLAGGILGGPL 409
Query: 128 VNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISE 187
+ +GRK ++L T SW++ + V + V R L GFS+ + P+YLGE +
Sbjct: 410 IEYLGRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSLPVYLGETVQ 469
Query: 188 TSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYA 247
+RGT+G L ++GIL +V G + + +PI F + +PE+P +Y
Sbjct: 470 PEVRGTLGLLPTAFGNIGILLCFVAGKYMDWSGLAFLGAALPIPFLLLMFLIPETPRWYV 529
Query: 248 IKNQEGKAIESLKWLRNKTADQVQSELQ-IIK--QNTSKNVERTNFREFMGRSNMKAFVF 304
+ ++ +A ++L+WLR K AD V EL+ IIK Q+ ++ ++ + M ++N+K +
Sbjct: 530 SRGRDDRARKALQWLRGKKAD-VDPELKGIIKSHQDAERHASQSAMLDLMKKANLKPLLI 588
Query: 305 MAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGR 364
L F+ +G+ ++I Y IF + + + + +I+ ++ ++ F +T IDR GR
Sbjct: 589 SLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDENLCTIIVGVVNFIATFIATMLIDRLGR 648
Query: 365 RVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTP 424
++L +S + G ++YV Q ++ W+P + + + F+LGFGP+
Sbjct: 649 KMLLYISDVAMIITLMTLGGFFYVKNSGQ-DVSQVGWLPLAAFVIYVLGFSLGFGPIPWL 707
Query: 425 LLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNF-LFGGVSSLVCTVY 483
++ E ++ + +V + I K F + IG + F +FG + ++ +
Sbjct: 708 MMGEILPGKIRGSAASVATAFNWSCTFIVTKTFADIINAIGTHGTFWMFGSIC-VIGLAF 766
Query: 484 LYYFLLETKGKTFNEIQYMFKYGKNEYMASLYSQQPL 520
+ +++ ET+GK+ +I+ G+ M+S+ + +PL
Sbjct: 767 VIFYVPETQGKSLEDIERKMM-GRVRRMSSVANIKPL 802
|
|
| FB|FBgn0031522 CG3285 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 116/436 (26%), Positives = 228/436 (52%)
Query: 73 IAAFTTGMSFAWSAPVLEELLSKESPI--PMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR 130
IA F+ G+ W +PV+ +L + ESP+ P+ ++ SW+ +++ IG+ + + AG+L++R
Sbjct: 34 IATFSHGLGVGWMSPVMRDLQTDESPLDFPVLVSQVSWIGSLVGIGSVMGNLIAGLLMDR 93
Query: 131 IGRKWSLLMTG-PITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETS 189
IGRK L P TT W + + +SV LY+ R + G + A YV+ P ++ EI++T+
Sbjct: 94 IGRKMVLFFIAIPYTTF-WCLIYFVQSVEFLYIGRLMAGITGGACYVVLPTFISEIADTN 152
Query: 190 IRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIK 249
+RG +G++ +S + G+L Y++ + + Y + + +P+ + + +PE+P+ K
Sbjct: 153 VRGRLGSIILLSVNTGVLAGYIVSTRVDYFTSPPFIIGLPVCYFICNFLIPETPHHLVRK 212
Query: 250 NQEGKAIESLKWLRNKTADQVQSELQ-------IIKQNTSKNVERTNFREFMGRSNMKAF 302
+ A S + +N + +++E + +IK+ T K + ++R+F+ R KA+
Sbjct: 213 GKFEAAKRSFMFYKNIRKNDIKAEDEFEEMKYLLIKEQTEK-AKSFDYRDFITRPAFKAY 271
Query: 303 VFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRA 362
A L + F+ + Y +FA+S T L +I+ ++ +V + +T D+
Sbjct: 272 ASAAVLLISNQFSASFCVTTYLADVFAASHTTLNLGMCTIIIGVLQIVGNYVTTLLCDKY 331
Query: 363 GRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGF-GPL 421
GRR+L L S+ G S+ G + + E ++ W+P + +S N+G G L
Sbjct: 332 GRRILMLTSTLGASVCLTAFGTFTFFA-EAA-DLSSVDWLPLVILSCFVFLCNIGLVGCL 389
Query: 422 FTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCT 481
F L+ E F + +++VS + ++ ++ ++ K+F + G ++ S +
Sbjct: 390 FVVLV-ELFPAKIRSVSVSTFVVILSSTVFLTLKIFPICMAVWG--TSVTMWSCSGITFF 446
Query: 482 VYLYY--FLLETKGKT 495
+LY+ FL ET GK+
Sbjct: 447 SFLYFCFFLEETNGKS 462
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 537 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 5e-50 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 6e-37 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 6e-20 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-13 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-12 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 5e-12 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-07 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 2e-05 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 2e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 9e-05 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 0.002 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 177 bits (452), Expect = 5e-50
Identities = 119/449 (26%), Positives = 210/449 (46%), Gaps = 30/449 (6%)
Query: 70 TACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVN 129
T I AF T + F L + + + +S +V+I +G + + AG L +
Sbjct: 16 TGVIGAFLTLIKFFKRFGALTSIGACAASTVLS----GLIVSIFSVGCLIGSLFAGKLGD 71
Query: 130 RIGRKWSLLMTGPITTASWIIAMYS--RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISE 187
R GRK SLL+ + ++ ++ +S L V R + G + I V+ PMY+ EI+
Sbjct: 72 RFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAP 131
Query: 188 TSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTY-------SLIIPIIFTVTFMFMP 240
+RG +G+L+Q+ GIL ++G L+ + + I+ + +F+P
Sbjct: 132 KKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLP 191
Query: 241 ESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTN--FREFMGRSN 298
ESP + +K + +A L LR V E+Q K + ++VE + E
Sbjct: 192 ESPRWLVLKGKLEEARAVLAKLRG--VSDVDQEIQEEKDSLERSVEAEKASWLELFRGKT 249
Query: 299 MKAFVFMAF-LAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTY 357
++ + M L +F+ TG+ +I Y+ TIF + S ++I+ ++ V F + +
Sbjct: 250 VRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETL-GLSDSLLVTIIVGVVNFVFTFIAIF 308
Query: 358 YIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLG 417
+DR GRR L L+ +AG ++ + G V + + V + I L FF LG
Sbjct: 309 LVDRFGRRPLLLLGAAGMAICFLVLG----VALLGVAKSKGAGIVAIVFILLFIAFFALG 364
Query: 418 FGPLFTPLLSEYFSSNMKAVS---CAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGG 474
+GP+ ++SE F ++ + N L LI + LF ++ IG Y +F G
Sbjct: 365 WGPVPWVIVSELFPLGVRPKAMAIATAANWLAN--FLIGF-LFPIITGAIGGYVFLVFAG 421
Query: 475 VSSLVCTVYLYYFLLETKGKTFNEIQYMF 503
+ L +++++F+ ETKG+T EI +F
Sbjct: 422 LLVLF-ILFVFFFVPETKGRTLEEIDELF 449
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 6e-37
Identities = 118/471 (25%), Positives = 208/471 (44%), Gaps = 50/471 (10%)
Query: 56 YLHTVLFLFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEI 115
+ ++F + T I +F + S + VV+I +
Sbjct: 34 AIGGLMFGYD----TGVIGGALALPAFEF---KFTSANSDSYSSSLW----GLVVSIFLV 82
Query: 116 GNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVM---RTLQGFSMA 172
G ++ + AG L +R GRK SLL+ + I+ + L + ++ R L G +
Sbjct: 83 GGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVG 142
Query: 173 AIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTY-------VLGSELSYMNYLTYS 225
+ PMYL EI+ ++RG + +L+Q++ GIL Y L + L + L
Sbjct: 143 IASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQ 202
Query: 226 LIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKT--ADQVQSELQ--IIKQNT 281
LI + + F+PESP + K + +A +SL LR + ++ EL+ IK++
Sbjct: 203 LIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSI 262
Query: 282 SKNVERTNFREF--MGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIF----ASSETFL 335
K + ++ R + L F+ FTG+ +I+ Y+ TIF S++
Sbjct: 263 EKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAF 322
Query: 336 PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYE 395
+SI+ + F + + +DR GRR L L+ +AG ++ F+ G +
Sbjct: 323 ---LVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLG--ILGASFVTGS 377
Query: 396 IPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNM--KAVSCAVI-----NILCTT 448
+ V + I L FF +G+GP+ ++SE F ++ K +S AV N +
Sbjct: 378 SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGF 437
Query: 449 LGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFLLETKGKTFNEI 499
L M + IG+ F+F G +++ +++Y+FL ETKG+T EI
Sbjct: 438 LFPT-------MLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 6e-20
Identities = 95/435 (21%), Positives = 179/435 (41%), Gaps = 60/435 (13%)
Query: 109 VVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLY------- 161
VA IG + G NR GR+ SL + + S + + +
Sbjct: 60 CVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGY 119
Query: 162 -----VMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGIL------YTY 210
+ R + G + ++SPMY+ EI+ IRG + + Q + G L Y
Sbjct: 120 VPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFI 179
Query: 211 VLGSELSYMN-----YLTYSLIIP-IIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRN 264
+ S++N Y+ S IP ++F + F+PE+P + + ++ +A L+ +
Sbjct: 180 ARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMG 239
Query: 265 KTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAF-------LAVFRAFTGV 317
T LQ IK + + K +F L+VF+ F G+
Sbjct: 240 NT--LATQALQEIKHSLDHGRKTGG----------KLLMFGVGVIVIGVMLSVFQQFVGI 287
Query: 318 QSIIAYANTIFASSETFLPSDYI-SILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCS 376
++ YA IF + + +I+ +I L + +D+ GR+ L ++ + G +
Sbjct: 288 NVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMA 347
Query: 377 LFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNM-- 434
+ F G +Y V LS+ F + +GP+ LLSE F + +
Sbjct: 348 IGMFSLGTAFYTQAP--------GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG 399
Query: 435 KAVSCAV-----INILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFLL 489
KA++ AV N + + K +L+ +S +++ G ++ ++++ F+
Sbjct: 400 KALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIY-GCMGVLAALFMWKFVP 458
Query: 490 ETKGKTFNEIQYMFK 504
ETKGKT E++ +++
Sbjct: 459 ETKGKTLEEMEALWE 473
|
Length = 479 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 3/172 (1%)
Query: 68 CVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGML 127
+ + F +G+ +P L L +S ++ +V+ +G L + AG L
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLG---LSASQAGLIVSAFSLGYALGSLLAGYL 57
Query: 128 VNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISE 187
+R GR+ LL+ + ++ ++ S+ L V R L G A+Y + + E
Sbjct: 58 SDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFP 117
Query: 188 TSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFM 239
RG LF LG L +LG L+ + +I I + +
Sbjct: 118 PKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL 169
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 64/382 (16%), Positives = 126/382 (32%), Gaps = 38/382 (9%)
Query: 72 CIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI 131
+AAF G+ + P L L+++ + +SP E ++ +G L+ AG L +R
Sbjct: 2 FLAAFLAGLGRSLLGPALPLYLAED--LGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF 59
Query: 132 GRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIR 191
GR+ LL+ + ++ +++ S+ L V+R LQG A++ + + + R
Sbjct: 60 GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEER 119
Query: 192 GTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQ 251
G L LG +LG L+ + + +I I + + +
Sbjct: 120 GRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVL---AALLLPRPP 176
Query: 252 EGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVF 311
L + ++ +A L
Sbjct: 177 PESKRPKPAEEAPAPLVPAWKLL---------------------LRDPVLWLLLALLLFG 215
Query: 312 RAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVS 371
AF + + + + S + L ++ + DR GRR L++
Sbjct: 216 FAFFALLTYLPLYQEVLGLSALLAG--LLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLA 273
Query: 372 SAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFS 431
L + L +S +++ LLG L F L L+S+
Sbjct: 274 LLLLILAALGLALLSLTE---------SSLWLLVALLLLGFGAGLVFPALNA-LVSDLAP 323
Query: 432 SNMKAVSCAVINILCTTLGLIS 453
+ + + N + G +
Sbjct: 324 KEERGTASGLYNTAGSLGGALG 345
|
Length = 346 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 5e-12
Identities = 86/411 (20%), Positives = 171/411 (41%), Gaps = 53/411 (12%)
Query: 105 EGSWVVAIIE----IGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGL 160
E +W V + + +G L G L +R GRK LL++ +T S ++ +S +
Sbjct: 124 EDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVF 183
Query: 161 YVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMN 220
V R L G + I+V + + E R +GTL Q+ LG VL ++Y
Sbjct: 184 LVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLG----LVLLPLVAYFI 239
Query: 221 ----YLTYSLIIP-IIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQ 275
+L ++ +P +F + F+PESP + + + +A++ L+ + ++ +E+
Sbjct: 240 PDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVL 299
Query: 276 II--KQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSET 333
+ +++ S + ++ +F + N++ + F T +Y +
Sbjct: 300 SLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFT--TAF----SYYGLVLDLGNL 353
Query: 334 FLPSDYIS-ILFAIILLVSIFPSTYYIDRAGRR---VLFLVSSAGCSLFSFIAGLYYYVT 389
+ Y+ + ++ L + + IDR GRR L+ + L + Y
Sbjct: 354 GG-NIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFL 412
Query: 390 IELQYEIPYTSWVPFLSISLLGVF-----FNLGFGPLFTPLLSEYFSSNMKAVSCAVINI 444
++++LG F F + + L+T E + + ++ + V +
Sbjct: 413 R--------------TALAVLGKFGITSAFQMVY--LYTA---ELYPTVVRNLGVGVCST 453
Query: 445 LCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFLLETKGKT 495
+ +IS L +L +K + + LFGG++ L + L FL ETKG
Sbjct: 454 MARVGSIISPFLVYLGEKWLFLP-LVLFGGLALLAGILTL--FLPETKGVP 501
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 5e-07
Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 1/181 (0%)
Query: 60 VLFLFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYL 119
L L L + +A +SF + + L + + +S E ++++ +G L
Sbjct: 167 ALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGIL 226
Query: 120 SPIPAGMLVNRIGRKWSLLMTG-PITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVIS 178
+ G+L +R+GR+ LL+ G + ++ + S+ L V L GF + +
Sbjct: 227 GALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286
Query: 179 PMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMF 238
E++ RGT LF LG +L L +I +
Sbjct: 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAAL 346
Query: 239 M 239
+
Sbjct: 347 L 347
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 55/299 (18%), Positives = 110/299 (36%), Gaps = 25/299 (8%)
Query: 101 MSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRK----WSLLMTGPITTASWIIAMYSRS 156
+ P + ++ + IG + G L +RIGR+ WS+L+ T + +
Sbjct: 49 LDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLC----ALATN 104
Query: 157 VLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTL----FQISCHLGILYTYVL 212
V L ++R L G + + + E + RGT L + I +G L
Sbjct: 105 VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL 164
Query: 213 GSELSYMNYLTYSLIIPIIFT-VTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQ 271
+ + I P++ + F+PES + + + + + + + Q
Sbjct: 165 IPVFGWRSLFYVGGIAPLLLLLLLMRFLPES-IDFLVSKRPETVRRIVNAIAPQMQAEAQ 223
Query: 272 SEL--QIIKQNTSKNVERTNFREFMGRSNMKAFV--FMAFLAVFRAFTGVQSIIAYANTI 327
S L Q Q T ++V + F+ R + ++ FM + V+ + ++
Sbjct: 224 SALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFS 283
Query: 328 FASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYY 386
+ + T + I+ + DR G RV L+ G ++F+ + G
Sbjct: 284 LSLAATGGALFNFGGVIGSIIF------GWLADRLGPRVTALLLLLG-AVFAVLVGSTL 335
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 5/141 (3%)
Query: 107 SWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTL 166
++A +G + +G+L +R GRK LL+ I S + S ++ L + R L
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 167 QGFSMAAIYVISPMYLGEISETSIR----GTIGTLFQISCHLGILYTYVLGSELSY-MNY 221
QGF A V + +I R G + + LG VL L + +
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPF 120
Query: 222 LTYSLIIPIIFTVTFMFMPES 242
L +++ F + +PE+
Sbjct: 121 LFLAILALAAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 9e-05
Identities = 32/187 (17%), Positives = 54/187 (28%), Gaps = 14/187 (7%)
Query: 303 VFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSD--YISILFAIILLVSIFPSTYYID 360
+ + LA F G ++ Y ++ + LF + ++ D
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD 236
Query: 361 RAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGP 420
R GRR L L+ + + S L LL F P
Sbjct: 237 RLGRRRLLLLIGLLLAALGLLLLAL------------APSLALLLVALLLLGFGLGFAFP 284
Query: 421 LFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVC 480
L SE + + + N + G + L L+ G FL +L+
Sbjct: 285 ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLA 344
Query: 481 TVYLYYF 487
+ L
Sbjct: 345 ALLLLLL 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.002
Identities = 39/175 (22%), Positives = 70/175 (40%), Gaps = 23/175 (13%)
Query: 92 LLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIA 151
L S E + + + + I+ +G + G L +++GRK LL+ + A
Sbjct: 190 LPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNG---FFA 246
Query: 152 MYSRSVLG---LYVMRTLQGFSMAAIYVISPMYLGEISETSIRG----------TIGTLF 198
+S V G R L GF + I Y E RG IG ++
Sbjct: 247 FFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIY 306
Query: 199 QISCHLGIL----YTYVLGSELSYMNYLTYSLI--IPIIFTV-TFMFMPESPYFY 246
+ I+ +++ +GS + ++ + ++ P +F + FMPESP F+
Sbjct: 307 AAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFF 361
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 537 | |||
| KOG0569|consensus | 485 | 100.0 | ||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| KOG0254|consensus | 513 | 100.0 | ||
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| KOG0253|consensus | 528 | 100.0 | ||
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| KOG0252|consensus | 538 | 100.0 | ||
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| KOG0255|consensus | 521 | 100.0 | ||
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.98 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.98 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.98 | |
| KOG1330|consensus | 493 | 99.97 | ||
| PRK11043 | 401 | putative transporter; Provisional | 99.97 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.97 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.97 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.97 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.97 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.97 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.97 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.97 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.97 | |
| KOG2532|consensus | 466 | 99.97 | ||
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.97 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.97 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| KOG2533|consensus | 495 | 99.97 | ||
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.96 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.96 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.96 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.96 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.96 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.96 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.96 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.96 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.95 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.95 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.95 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.95 | |
| KOG3764|consensus | 464 | 99.95 | ||
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.95 | |
| KOG2504|consensus | 509 | 99.95 | ||
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.95 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.95 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.94 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.94 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.94 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.94 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.94 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.94 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.93 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.93 | |
| KOG2615|consensus | 451 | 99.93 | ||
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.93 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.92 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.91 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.9 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.89 | |
| KOG2563|consensus | 480 | 99.88 | ||
| KOG4686|consensus | 459 | 99.88 | ||
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.86 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.86 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.85 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.85 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.84 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.84 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.83 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.82 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.81 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.8 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.75 | |
| KOG2325|consensus | 488 | 99.75 | ||
| KOG3626|consensus | 735 | 99.72 | ||
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.72 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.72 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.67 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.62 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.55 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.5 | |
| KOG2816|consensus | 463 | 99.49 | ||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.49 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.48 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.46 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.45 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.45 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.45 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.45 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.43 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.43 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.43 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.42 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.41 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.4 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.39 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.38 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.37 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.37 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.37 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.37 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.36 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.36 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.36 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.35 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.34 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.34 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.32 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.31 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.31 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.3 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.3 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.3 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.29 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.29 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.29 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.28 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.28 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.28 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.27 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.27 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.26 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.26 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.26 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.25 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.25 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.25 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.24 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.24 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.24 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.23 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.23 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.23 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.22 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.22 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.2 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.2 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.19 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.19 | |
| KOG3098|consensus | 461 | 99.18 | ||
| KOG3762|consensus | 618 | 99.18 | ||
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.17 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.17 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.17 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.16 | |
| KOG1330|consensus | 493 | 99.15 | ||
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.15 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.15 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.14 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.14 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.13 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.13 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.12 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.1 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.1 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.07 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.06 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.05 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.05 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.04 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.03 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.03 | |
| KOG0569|consensus | 485 | 99.03 | ||
| KOG2504|consensus | 509 | 99.01 | ||
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.01 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.99 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.99 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.98 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.98 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.98 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.98 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.97 | |
| KOG2615|consensus | 451 | 98.97 | ||
| KOG0637|consensus | 498 | 98.94 | ||
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.94 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.94 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.94 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.93 | |
| KOG3764|consensus | 464 | 98.93 | ||
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.92 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.92 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.91 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.89 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.89 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.88 | |
| KOG0253|consensus | 528 | 98.88 | ||
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.87 | |
| KOG4332|consensus | 454 | 98.86 | ||
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.86 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.85 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.83 | |
| KOG2532|consensus | 466 | 98.81 | ||
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.77 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.75 | |
| KOG0255|consensus | 521 | 98.71 | ||
| KOG2533|consensus | 495 | 98.64 | ||
| KOG3574|consensus | 510 | 98.64 | ||
| KOG3810|consensus | 433 | 98.63 | ||
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.63 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.63 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.6 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.6 | |
| KOG0254|consensus | 513 | 98.56 | ||
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.56 | |
| KOG3762|consensus | 618 | 98.55 | ||
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.54 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.53 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.51 | |
| KOG4686|consensus | 459 | 98.51 | ||
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.47 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.43 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.37 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.36 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.36 | |
| KOG0252|consensus | 538 | 98.32 | ||
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.3 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.26 | |
| KOG2816|consensus | 463 | 98.21 | ||
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.15 | |
| KOG1237|consensus | 571 | 98.14 | ||
| KOG2325|consensus | 488 | 98.11 | ||
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.11 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.1 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.09 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 98.05 | |
| KOG1479|consensus | 406 | 97.71 | ||
| KOG2563|consensus | 480 | 97.68 | ||
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.68 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.66 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.61 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.37 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.3 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.29 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.22 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.16 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.12 | |
| KOG3098|consensus | 461 | 97.06 | ||
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.06 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.05 | |
| KOG3097|consensus | 390 | 96.94 | ||
| KOG3626|consensus | 735 | 96.76 | ||
| KOG3880|consensus | 409 | 96.2 | ||
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.17 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.09 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.94 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.82 | |
| KOG0637|consensus | 498 | 95.59 | ||
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 95.32 | |
| KOG1479|consensus | 406 | 95.09 | ||
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 94.65 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 94.39 | |
| KOG3880|consensus | 409 | 94.24 | ||
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 93.68 | |
| KOG4332|consensus | 454 | 91.54 | ||
| KOG1237|consensus | 571 | 91.19 | ||
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 87.33 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 86.01 | |
| KOG3574|consensus | 510 | 84.93 | ||
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 84.3 | |
| PF11947 | 153 | DUF3464: Protein of unknown function (DUF3464); In | 82.14 | |
| PF06912 | 209 | DUF1275: Protein of unknown function (DUF1275); In | 80.6 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 80.12 | |
| COG1230 | 296 | CzcD Co/Zn/Cd efflux system component [Inorganic i | 80.02 |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=346.22 Aligned_cols=442 Identities=25% Similarity=0.373 Sum_probs=372.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCC-----CCC--CCCCh----hhHHHHHHHHHHhhhhhhhHHhhh
Q psy4866 61 LFLFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKES-----PIP--MSPNE----GSWVVAIIEIGNYLSPIPAGMLVN 129 (537)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~s~~~----~~~~~s~~~~~~~~~~~~~G~l~d 129 (537)
..+...+++.++++.|-.||+.+..++..+.+.+-.+ .+| .++.+ .+.+.+++.+|.++|+++.|+++|
T Consensus 6 t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~ 85 (485)
T KOG0569|consen 6 TRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLAD 85 (485)
T ss_pred cHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777779999999988877655543110 344 44443 467789999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHH
Q psy4866 130 RIGRKWSLLMTGPITTASWIIAMYS---RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGI 206 (537)
Q Consensus 130 r~Grr~~l~~~~~l~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 206 (537)
|+|||..++++.++..++.++..++ +++.+++++|++.|+..|.......-++.|..|++.||....+.+.+..+|.
T Consensus 86 ~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ 165 (485)
T KOG0569|consen 86 RFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGI 165 (485)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHH
Confidence 9999999999998888888777654 5899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhh------hhHHHHHHHHHHHHHHHHHHhhcccCChHHHHH-hCCHHHHHHHHHhhcCCChhhHHHH--HHHH
Q psy4866 207 LYTYVLGSE------LSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAI-KNQEGKAIESLKWLRNKTADQVQSE--LQII 277 (537)
Q Consensus 207 ~i~~~l~~~------~~wr~~~~~~~~~~~~~~~~~~~~~esp~~l~~-~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~ 277 (537)
+++..++.. -.|++.+.+..+++++.++...++||||||+.. +++.++|++.++++++.++++.+.+ .++.
T Consensus 166 ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~ 245 (485)
T KOG0569|consen 166 LLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREI 245 (485)
T ss_pred HHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence 999776633 369999999999999999999999999999998 8999999999999999875433322 2333
Q ss_pred HHhhhhcccccchHHhhc-cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhH
Q psy4866 278 KQNTSKNVERTNFREFMG-RSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPS 355 (537)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 355 (537)
+++...++++.+++++++ +..+++..+.+.+....++.+.+.+.+|...++.+.|.+. .+.+.....++..++.++++
T Consensus 246 ~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~ 325 (485)
T KOG0569|consen 246 EEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVS 325 (485)
T ss_pred HHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333335778999999 6778888899999999999999999999999999999874 45688888999999999999
Q ss_pred hhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCcccc
Q psy4866 356 TYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMK 435 (537)
Q Consensus 356 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 435 (537)
.++.||.|||++++.+..++.+..+++........... ....+..+...+++..+++.+.+|+.+-+.+|++|++.|
T Consensus 326 ~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~---~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R 402 (485)
T KOG0569|consen 326 PFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG---SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSAR 402 (485)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccch
Confidence 99999999999999999999998888877665544000 011233467778888899999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhHHHHHHHHHHHhhccCCCCCCHHHHHHHHhcC
Q psy4866 436 AVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFLLETKGKTFNEIQYMFKYG 506 (537)
Q Consensus 436 ~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (537)
..++++...+.++..++....+..+.+..|. ..|+++.+.+++..+..++++||||+|+..|+.++.++.
T Consensus 403 ~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 403 SAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999988 578888999999999999999999999999988776655
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=359.41 Aligned_cols=415 Identities=15% Similarity=0.158 Sum_probs=325.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHH
Q psy4866 62 FLFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTG 141 (537)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~ 141 (537)
+++|.++++++++.+.++++...++.++|.+.+ +++++..+.+++.+++.++.+++++++|+++||+|||+++++++
T Consensus 163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~---~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~l 239 (742)
T TIGR01299 163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEK---DLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICL 239 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 567888888999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh------
Q psy4866 142 PITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE------ 215 (537)
Q Consensus 142 ~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~------ 215 (537)
++.++++++++++++++.++++|++.|++.|+..+...+++.|++|+++|++.++++.+++.+|.++++.++..
T Consensus 240 il~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G 319 (742)
T TIGR01299 240 SVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYG 319 (742)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988876532
Q ss_pred -----------hhHHHHHHHHHHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhh---HHHHH--HHHHH
Q psy4866 216 -----------LSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQ---VQSEL--QIIKQ 279 (537)
Q Consensus 216 -----------~~wr~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~~~~ 279 (537)
.+||+.+++.++++++.++..+++||||+|+..+++.+++.+.++++.+.+... ..... +..+.
T Consensus 320 ~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~ 399 (742)
T TIGR01299 320 WSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKT 399 (742)
T ss_pred chhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHH
Confidence 269999999988888888888889999999999999999999999988765321 11110 00000
Q ss_pred hh------h-hccc------------------ccchHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc---
Q psy4866 280 NT------S-KNVE------------------RTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS--- 331 (537)
Q Consensus 280 ~~------~-~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 331 (537)
.. + ++.. ...++++++++.++.++++..++++.. .+++.+..|+|.++...
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~-~~yygl~~w~P~~~~~~~~~ 478 (742)
T TIGR01299 400 IHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLS-FGYYGLSVWFPDMIKHLQAD 478 (742)
T ss_pred hhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 00 0 0000 013566777777777776666665544 45888999999875431
Q ss_pred ---------------------------------------CC---------------------------------------
Q psy4866 332 ---------------------------------------ET--------------------------------------- 333 (537)
Q Consensus 332 ---------------------------------------~~--------------------------------------- 333 (537)
+.
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 558 (742)
T TIGR01299 479 DYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFEN 558 (742)
T ss_pred HHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccc
Confidence 00
Q ss_pred -------------------------C-----C-----ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHH
Q psy4866 334 -------------------------F-----L-----PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLF 378 (537)
Q Consensus 334 -------------------------~-----~-----~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 378 (537)
. . .......+..++.+++.+++|+++||+|||+++..+.++.+++
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~ 638 (742)
T TIGR01299 559 TDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCIS 638 (742)
T ss_pred cchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 0 0 0012244566888999999999999999999999998888888
Q ss_pred HHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHH
Q psy4866 379 SFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFF 458 (537)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g 458 (537)
++++.+. ......++..++++++... ..+...++++|++|++.|++++|+.+....+|++++|.+.+
T Consensus 639 ~ll~~~~------------~s~~~ll~~~~l~g~~~~~-~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g 705 (742)
T TIGR01299 639 CFFLSFG------------NSESAMIALLCLFGGLSIA-AWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFG 705 (742)
T ss_pred HHHHHHH------------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776653 1222333333444444443 33456689999999999999999999999999999999999
Q ss_pred HHHHhhccchhhhHhhHHHHHHHHHHHhhccCCCCCC
Q psy4866 459 LMDKHIGMYSNFLFGGVSSLVCTVYLYYFLLETKGKT 495 (537)
Q Consensus 459 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (537)
.+.+. +...+|++.+++.++++++. .++||++++.
T Consensus 706 ~L~~~-~~~~pf~i~a~~lll~~ll~-~~LPET~~~~ 740 (742)
T TIGR01299 706 SFVGI-TKAAPILFASAALACGGLLA-LKLPDTRGQV 740 (742)
T ss_pred HHHHh-hhHHHHHHHHHHHHHHHHHH-HhCCCCcccc
Confidence 88775 45567777777777766655 4568888754
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=341.13 Aligned_cols=428 Identities=21% Similarity=0.324 Sum_probs=323.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCC--------CCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhh
Q psy4866 63 LFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPI--------PMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRK 134 (537)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr 134 (537)
..+.++.+++++.+.++++.+.+++..|.+.+ ++ +.+..+.+++.+++.++..++++++|+++||+|||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr 85 (479)
T PRK10077 9 YIFSITLVATLGGLLFGYDTAVISGTVESLNT---VFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR 85 (479)
T ss_pred HHHHHHHHHHHHHHhcCcccceehHhHHHHHH---HhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 45666777788899999999999999998888 55 88889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH------------hhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHH
Q psy4866 135 WSLLMTGPITTASWIIAMYS------------RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISC 202 (537)
Q Consensus 135 ~~l~~~~~l~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 202 (537)
++++++.++++++.++++++ ++++.++++|+++|++.|...+...++++|++|+++|++++++.+.+.
T Consensus 86 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~ 165 (479)
T PRK10077 86 DSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAI 165 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHH
Confidence 99999999999998888763 235678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh------------hhHHHHHHHHHHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhH
Q psy4866 203 HLGILYTYVLGSE------------LSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQV 270 (537)
Q Consensus 203 ~~G~~i~~~l~~~------------~~wr~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~ 270 (537)
.+|.++++.++.. ++||+.|++.+++.++..+..+++||+|+|+..+++.+++.+..++..+... .
T Consensus 166 ~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~--~ 243 (479)
T PRK10077 166 IFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTL--A 243 (479)
T ss_pred HHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChh--H
Confidence 9999988776532 4899999999888877777777899999999888888888777776654432 1
Q ss_pred HHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHH
Q psy4866 271 QSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLP-SDYISILFAIILL 349 (537)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 349 (537)
+...++.++....+. ...+..+. ..............+....+.+...+|.|.+.+..+.+.. ........++..+
T Consensus 244 ~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~ 320 (479)
T PRK10077 244 TQALQEIKHSLDHGR--KTGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINL 320 (479)
T ss_pred HHHHHHHHHHHHHhh--hhhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 111111111111000 00011111 1111112222233344444556667788888887776543 3455666788889
Q ss_pred HHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhcccc
Q psy4866 350 VSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEY 429 (537)
Q Consensus 350 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (537)
++.+++++++||+|||++++.+.++.+++.+++...... ..........+.+++.++...+.+..+.++.|.
T Consensus 321 i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 392 (479)
T PRK10077 321 TFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT--------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEI 392 (479)
T ss_pred HHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHHhccccchhHHHhHhh
Confidence 999999999999999999999998888887776543211 112223334445555555555567777999999
Q ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHHHHH------HhhccchhhhHhhHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q psy4866 430 FSSNMKAVSCAVINILCTTLGLISYKLFFLMD------KHIGMYSNFLFGGVSSLVCTVYLYYFLLETKGKTFNEIQYMF 503 (537)
Q Consensus 430 ~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (537)
+|++.|+++.|+.+...+++.++++.+.+.+. +..++...|++.+++++++.++.+.+.||+|+++.+|.++..
T Consensus 393 ~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 472 (479)
T PRK10077 393 FPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALW 472 (479)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHH
Confidence 99999999999999999999999977776544 567777788888888888877777788999998888776665
Q ss_pred hcC
Q psy4866 504 KYG 506 (537)
Q Consensus 504 ~~~ 506 (537)
+++
T Consensus 473 ~~~ 475 (479)
T PRK10077 473 EPE 475 (479)
T ss_pred hhc
Confidence 443
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=342.42 Aligned_cols=447 Identities=25% Similarity=0.411 Sum_probs=370.2
Q ss_pred HHHHHHHHHHHHhhhhhhhh--hccchhhHHhhhcCCCCCCCCC----ChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhH
Q psy4866 62 FLFSFLCVTACIAAFTTGMS--FAWSAPVLEELLSKESPIPMSP----NEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKW 135 (537)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~----~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~ 135 (537)
.......+...++.+..+++ .+..++....+.+......... .+.+|+.+++.++..++++++|+++|++|||+
T Consensus 41 ~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~ 120 (513)
T KOG0254|consen 41 PFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKK 120 (513)
T ss_pred eehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 35566677778888888887 7788888888776322112222 34489999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh
Q psy4866 136 SLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE 215 (537)
Q Consensus 136 ~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~ 215 (537)
.++++.+++.+|++++++++|+++++++|+++|+|.|+...+.+.+++|..|++.||...+..+....+|..++..++..
T Consensus 121 ~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~ 200 (513)
T KOG0254|consen 121 TLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYG 200 (513)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred h-----hHHHHHHHHHHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhh----ccc
Q psy4866 216 L-----SYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSK----NVE 286 (537)
Q Consensus 216 ~-----~wr~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 286 (537)
. +||..+.+..+++++..+..+++||||+|+.++++.+++++.++++++.++.+...+.++.+..... .+.
T Consensus 201 ~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (513)
T KOG0254|consen 201 TSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEG 280 (513)
T ss_pred hccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccc
Confidence 5 6999999999999988877889999999999999999999999999995545555555444411111 111
Q ss_pred ccchHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhhHhhhhcccCCcH
Q psy4866 287 RTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRV 366 (537)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 366 (537)
+..+++++++..+++.++...+..++++++.+...+|.+.+++..+...+......+.++..+++..++.++.||+|||+
T Consensus 281 ~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~ 360 (513)
T KOG0254|consen 281 KASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRK 360 (513)
T ss_pred cccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 23467777767888889999999999999999999999999999988744466677788888999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHH
Q psy4866 367 LFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILC 446 (537)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 446 (537)
+++.+...+.+++++++.................+..+...+++...+..++.++.+.+.+|.+|.+.|+.+.++...+.
T Consensus 361 lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n 440 (513)
T KOG0254|consen 361 LLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVN 440 (513)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHH
Confidence 99999999999999888776554310001223456777888888888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhhHhhHHHHHHHH-HHHhhccCCCCCCHHHHHHHHhcCcc
Q psy4866 447 TTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTV-YLYYFLLETKGKTFNEIQYMFKYGKN 508 (537)
Q Consensus 447 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (537)
++..++....+..+.+..+....|..++.++.+... +.+++.||+|+++.+|+++...+...
T Consensus 441 ~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~~~ 503 (513)
T KOG0254|consen 441 WLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEGIK 503 (513)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcCCc
Confidence 999888877777776665534567777777777766 77889999999999999887665533
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=348.18 Aligned_cols=427 Identities=15% Similarity=0.145 Sum_probs=311.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCC--CCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHH
Q psy4866 62 FLFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKES--PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLM 139 (537)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~ 139 (537)
+.++.++++++++.+.++++.+..+.+.|.+..+.. +.+.+..+.+++.+.+.++..++++++|+++||+|||+++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~ 91 (502)
T TIGR00887 12 WQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGM 91 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 467778888899999999999999999988876210 123455678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh------HHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHh
Q psy4866 140 TGPITTASWIIAMYSRS------VLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLG 213 (537)
Q Consensus 140 ~~~l~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~ 213 (537)
+.+++.+++++++++++ ++.++++|+++|++.|...+....+++|++|+++|++++++......+|.++++.++
T Consensus 92 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~ 171 (502)
T TIGR00887 92 ELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVA 171 (502)
T ss_pred HHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876 789999999999999999999999999999999999999999999999998887765
Q ss_pred hh---------------------------hhHHHHHHHHHHHHHHHHHHhhcccCChHHHHHhCCHH-HHHHHHHhhcCC
Q psy4866 214 SE---------------------------LSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEG-KAIESLKWLRNK 265 (537)
Q Consensus 214 ~~---------------------------~~wr~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~-~a~~~~~~~~~~ 265 (537)
.. .+||+.+.+.++++++..+..+++||||+|+..+++.+ ++.+.+++..+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~ 251 (502)
T TIGR00887 172 LIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQV 251 (502)
T ss_pred HHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhcc
Confidence 32 26999999998888887777888999999999988874 466666666543
Q ss_pred ChhhHHHHHHHHHHhhhhcccccchHHhhccc---hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCC-hh---
Q psy4866 266 TADQVQSELQIIKQNTSKNVERTNFREFMGRS---NMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLP-SD--- 338 (537)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--- 338 (537)
+.++..++.++.++. .+..+.+++++++++ ..++..+......+.....++....|.|.++++.|.+.. +.
T Consensus 252 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~ 329 (502)
T TIGR00887 252 KIEAEPDEVEKASTA--VEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNA 329 (502)
T ss_pred ccccCcccccchhcc--ccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhH
Confidence 221111111111111 111123577776522 111222222222222223344566678888877766422 11
Q ss_pred ---------HHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHH
Q psy4866 339 ---------YISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISL 409 (537)
Q Consensus 339 ---------~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (537)
....+..++.+++.++.++++||+|||+.++.+..+.+++++++....... ..........+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~ 400 (502)
T TIGR00887 330 YEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL---------STHGFLAIYVL 400 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc---------chhHHHHHHHH
Confidence 022334456677888999999999999999888877777766665432110 01111222222
Q ss_pred HHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhh----------ccchhhhHhhHHHHH
Q psy4866 410 LGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHI----------GMYSNFLFGGVSSLV 479 (537)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------g~~~~~~~~~~~~~~ 479 (537)
....++.+..++.+.+..|.+|++.|+++.|+.+.+++++++++|.+.+.+.+.. ++...+.++++++++
T Consensus 401 ~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 480 (502)
T TIGR00887 401 AQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFL 480 (502)
T ss_pred HHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHH
Confidence 2333345556677788999999999999999999999999999999999998842 344567777777777
Q ss_pred HHHHHHhhccCCCCCCHHHHH
Q psy4866 480 CTVYLYYFLLETKGKTFNEIQ 500 (537)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~ 500 (537)
+.++. +++||+++++++|++
T Consensus 481 ~~i~~-~~lpEt~~~~leei~ 500 (502)
T TIGR00887 481 GILFT-LLIPETKGKSLEELS 500 (502)
T ss_pred HHHHh-eEeccCCCCCHHhhh
Confidence 76654 677999999887664
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=329.82 Aligned_cols=430 Identities=27% Similarity=0.415 Sum_probs=323.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCC--------CChhhHHHHHHHHHHhhhhhhhHHhhhhhhh
Q psy4866 62 FLFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMS--------PNEGSWVVAIIEIGNYLSPIPAGMLVNRIGR 133 (537)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Gr 133 (537)
++.+...+++.++.++.+++.....+.+|.+.. +++.+ ..+.+++.+++.++..++++++|+++||+||
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~gr 100 (481)
T TIGR00879 24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAF---EFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGR 100 (481)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhhhhhcHHH---HHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhh
Confidence 455556667777888889999999999988887 66666 8899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHH
Q psy4866 134 KWSLLMTGPITTASWIIAMYSR---SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTY 210 (537)
Q Consensus 134 r~~l~~~~~l~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~ 210 (537)
|++++++.+++.++.+++.++. +++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++
T Consensus 101 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 180 (481)
T TIGR00879 101 KKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAY 180 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999986654 4558999999999999999999999999999999999999999999999999999
Q ss_pred HHh---hh----hhHHHHHHHHHHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHH--HHHH--HHH
Q psy4866 211 VLG---SE----LSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQS--ELQI--IKQ 279 (537)
Q Consensus 211 ~l~---~~----~~wr~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~--~~~ 279 (537)
.++ .. .+||+.|++.++..++..+..+++||+|+++..+++.+++.+..++..+.+..+... .... ...
T Consensus 181 ~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (481)
T TIGR00879 181 GFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKR 260 (481)
T ss_pred HHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHH
Confidence 998 33 589999999777777777777889999999888887777666655544333211111 0000 001
Q ss_pred hhhhcccccchHHhhcc--chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHh
Q psy4866 280 NTSKNVERTNFREFMGR--SNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPST 356 (537)
Q Consensus 280 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g 356 (537)
..+.+..+..+++.++. ...++.++...+..+...........+.|.++++.+.+. .......+..++.+++.++.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 340 (481)
T TIGR00879 261 SIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAI 340 (481)
T ss_pred HHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 11111112223444431 123444555555555555555567778888888877764 334666777888899999999
Q ss_pred hhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccc
Q psy4866 357 YYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKA 436 (537)
Q Consensus 357 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 436 (537)
++.||++||+.+..+.++.+++++++.+...... .. ......+..+....++..+++.+..+....++.|.+|++.|+
T Consensus 341 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 418 (481)
T TIGR00879 341 FLVDRFGRRPLLLIGAAGMAICLFVLGILGASFV-TG-SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRP 418 (481)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHhhccc-CC-cccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHH
Confidence 9999999999998887777777666653221111 00 000013334444555556666666677778889999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhHHHHHHHHHHHhhccCCCCCCH
Q psy4866 437 VSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFLLETKGKTF 496 (537)
Q Consensus 437 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (537)
++.++.+...++|.+++|.+.+.+.++.|+...|++.+++++++.++.+++.+|+++++.
T Consensus 419 ~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 419 KGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCCh
Confidence 999999999999999999999999999999988999988888888877777777776544
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=327.82 Aligned_cols=388 Identities=16% Similarity=0.197 Sum_probs=292.3
Q ss_pred hhHHhhhcCCCCCCCC---CChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy4866 87 PVLEELLSKESPIPMS---PNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVM 163 (537)
Q Consensus 87 ~~~~~~~~~~~~~~~s---~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~ 163 (537)
+..|.+.+ |++++ ..+.+++.+++.++..++.+++|+++||+|||++++++.++.+++.+++++++|++.+++.
T Consensus 110 ~~~~~i~~---e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 186 (505)
T TIGR00898 110 TFSSTIVT---EWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVF 186 (505)
T ss_pred cccccEEE---EecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 56788888 99999 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHhhcccCC
Q psy4866 164 RTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-SYMNYLTYSLIIPIIFTVTFMFMPES 242 (537)
Q Consensus 164 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~-~wr~~~~~~~~~~~~~~~~~~~~~es 242 (537)
|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+ +||+.|++.+++.++..+..+++||+
T Consensus 187 r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~es 266 (505)
T TIGR00898 187 RLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPES 266 (505)
T ss_pred HHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999988664 79999999999888877777889999
Q ss_pred hHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHH--HHhhhhcccccchHHhhccchHHHHHHHHHHHHHHHhhhHHHH
Q psy4866 243 PYFYAIKNQEGKAIESLKWLRNKTADQVQSELQII--KQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSI 320 (537)
Q Consensus 243 p~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (537)
|+|+..+++.+++.+.+++..+.++.....+.... ++....++.+.+++++++++..+...+...+..+.....++.
T Consensus 267 p~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~- 345 (505)
T TIGR00898 267 PRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYG- 345 (505)
T ss_pred hHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHH-
Confidence 99999999999998888776554332211111111 111111112356788887655555444443333322111111
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccc
Q psy4866 321 IAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTS 400 (537)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (537)
.+.+....+. +......+.++..+++.++.+++.||+|||+.+..+.++.+++++++.+.. ....
T Consensus 346 ---~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~----------~~~~ 410 (505)
T TIGR00898 346 ---LVLDLGNLGG--NIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP----------VDLY 410 (505)
T ss_pred ---HhccccccCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC----------CCch
Confidence 1222222222 334555667788889999999999999999999988888777776655431 1112
Q ss_pred hhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhHHHHHH
Q psy4866 401 WVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVC 480 (537)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 480 (537)
+......++.+++... ..+..+.+..|.+|++.|++++|+.+....+|++++|.+.+ + +..+...++.+++++.+++
T Consensus 411 ~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~ 487 (505)
T TIGR00898 411 FLRTALAVLGKFGITS-AFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLA 487 (505)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHH
Confidence 3333333333333333 33455689999999999999999999999999999999998 4 4446667788888777777
Q ss_pred HHHHHhhccCCCCCCHH
Q psy4866 481 TVYLYYFLLETKGKTFN 497 (537)
Q Consensus 481 ~~~~~~~~~~~~~~~~~ 497 (537)
.++. +++||+++++++
T Consensus 488 ~~~~-~~lpet~~~~l~ 503 (505)
T TIGR00898 488 GILT-LFLPETKGVPLP 503 (505)
T ss_pred HHHH-HcCcCCCCCCCC
Confidence 6655 567888876543
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=312.58 Aligned_cols=391 Identities=16% Similarity=0.128 Sum_probs=271.7
Q ss_pred HHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCCh-hhH-----HHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHH
Q psy4866 67 LCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNE-GSW-----VVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMT 140 (537)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~-----~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~ 140 (537)
+.+...++.+++++|...++...|.+.+ +++.+.++ .++ +.++..+++.++++++|+++||+|||+++.++
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~ 93 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFVAYALGK---VFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAIT 93 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 4556678999999999999999999998 77644432 222 25778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHH--------HHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHH
Q psy4866 141 GPITTASWIIAMYSRSVLG--------LYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVL 212 (537)
Q Consensus 141 ~~l~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l 212 (537)
+++++++++++++++|++. ++++|+++|++.|+.++...+++.|++|+++|+++.++...+..+|.++++.+
T Consensus 94 ~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~ 173 (490)
T PRK10642 94 IVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGV 173 (490)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999875 88999999999999999999999999999999999999998888888877644
Q ss_pred hh------------hhhHHHHHHHHHHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHh
Q psy4866 213 GS------------ELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQN 280 (537)
Q Consensus 213 ~~------------~~~wr~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (537)
.. .++||+.|++.++++++.+++...+||+|+|...+++.++..+ +
T Consensus 174 ~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~----------------------~ 231 (490)
T PRK10642 174 VVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR----------------------E 231 (490)
T ss_pred HHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc----------------------c
Confidence 32 2589999999887776666666778999987543322111000 0
Q ss_pred hhhcccccchHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCCC-ChhHHHHHHHHHHHHHhhhHhhh
Q psy4866 281 TSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYY 358 (537)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l 358 (537)
...+..+.++++++++ .++........ .+.....++.+..|.|.+++. .+.+. ..........++.+++.++.|++
T Consensus 232 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l 309 (490)
T PRK10642 232 GLQDGPKVSFKEIATK-HWRSLLTCIGL-VIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLL 309 (490)
T ss_pred cccccccCCHHHHHHH-hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000113345566643 22222322222 222333466677788998865 35543 23345556677888999999999
Q ss_pred hcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchh
Q psy4866 359 IDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVS 438 (537)
Q Consensus 359 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 438 (537)
+||+|||+.+..+.++..+..+.+.... . ........+..++.+.+.+.... ....+..|.+|++.|+++
T Consensus 310 ~dr~grr~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~g~~~~~~~g-~~~~~~~~~~p~~~Rg~~ 379 (490)
T PRK10642 310 SDRFGRRPFVILGSVALFVLAIPAFILI--N-------SNVIGLIFAGLLMLAVILNCFTG-VMASTLPAMFPTHIRYSA 379 (490)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHH--h-------CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCccchHH
Confidence 9999999988777654443332211111 0 11122222333333333333332 334677899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhhHhhHHHHHHHHHHHhhccCCCCCC
Q psy4866 439 CAVINILCTTLGLISYKLFFLMDKHIG-MYSNFLFGGVSSLVCTVYLYYFLLETKGKT 495 (537)
Q Consensus 439 ~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (537)
.|+.+....+++.++|.+.+++.+..+ ++.++++..+.++++.+.. ++.||++++.
T Consensus 380 ~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~pes~~~~ 436 (490)
T PRK10642 380 LAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG-VTMKETANRP 436 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HHhccccCCC
Confidence 998777778888999999999988655 4545555555555554444 4568876543
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-38 Score=285.11 Aligned_cols=398 Identities=12% Similarity=0.089 Sum_probs=291.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHH
Q psy4866 62 FLFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTG 141 (537)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~ 141 (537)
+.++-+.+.+.++.....+..-.++...|.+.+ +.++|.+|+|++.+++++++.++..+.|.++||.+.|+.+.+++
T Consensus 25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e---~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gL 101 (448)
T COG2271 25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIE---DGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGL 101 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHH
Confidence 344555556666677777778888899999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHh--hh----
Q psy4866 142 PITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLG--SE---- 215 (537)
Q Consensus 142 ~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~--~~---- 215 (537)
++.++.+++++++++.+.+.+.-++.|..+|..+|.+...+..|++++|||+..++++++.++|..+.+++. ..
T Consensus 102 ilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~ 181 (448)
T COG2271 102 ILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH 181 (448)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988877 44
Q ss_pred hhHHHHHHHHHHHHHHHH-HHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhh
Q psy4866 216 LSYMNYLTYSLIIPIIFT-VTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFM 294 (537)
Q Consensus 216 ~~wr~~~~~~~~~~~~~~-~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (537)
.+||..|++.++++++.. +.++..+|+|+- ..-.+.++..++..+.. .++++.+.-+.++++
T Consensus 182 ~~w~~~f~~pgiiaiival~~~~~~rd~Pqs----------------~GLP~ie~~~~d~~e~~-~~~~~~~~ls~~~i~ 244 (448)
T COG2271 182 GGWRAAFYFPGIIAIIVALILLFLLRDRPQS----------------EGLPPIEEYRGDPLEIY-EEEKENEGLTAWQIF 244 (448)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCCCccc----------------cCCCCHHHhhcCchhhh-hhhccCCCccHHHHH
Confidence 389999999999987754 555667888721 00000001111111111 111111112333333
Q ss_pred c-cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCC-CChhHHHHHHHHHHHHHhhhHhhhhccc--CCcHHHH
Q psy4866 295 G-RSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETF-LPSDYISILFAIILLVSIFPSTYYIDRA--GRRVLFL 369 (537)
Q Consensus 295 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~ 369 (537)
. .-..++.++...+..+..+..=+.+..|.|.|+.+. +++ .++......+-.++++|++++|+++||+ |||....
T Consensus 245 ~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~ 324 (448)
T COG2271 245 VKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMA 324 (448)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHH
Confidence 2 223334455555555555555778899999998775 444 3566888889999999999999999997 5565544
Q ss_pred HhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHH-
Q psy4866 370 VSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTT- 448 (537)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~- 448 (537)
+.+.+.....++..+. . ++.+.++..+.++++|+.. .+..-+.-..+.|..|++..|++.|+...+.++
T Consensus 325 ~i~~~~i~~~~~~~w~--~-------~~~~~~l~~~~l~~iGf~I-yGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~ 394 (448)
T COG2271 325 LIFMLLITASLVLYWL--A-------PNGSYLLDAILLFIIGFLI-YGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLI 394 (448)
T ss_pred HHHHHHHHHHHHHHHc--C-------CCccHHHHHHHHHHHHHHH-hhHHHHHHHHHhccccHhhccchhchhhhHHHHh
Confidence 4333333322222221 1 1122233333333333332 222233446778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccchhhhHhhHHHHHHHHHHHhhcc
Q psy4866 449 LGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFLL 489 (537)
Q Consensus 449 g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 489 (537)
|.+.+....|++.|.+||...|.++.+.++++.+++.....
T Consensus 395 Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 395 GAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred hHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 88888999999999999999999888888887776655443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=278.27 Aligned_cols=368 Identities=14% Similarity=0.156 Sum_probs=283.4
Q ss_pred HHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHH
Q psy4866 65 SFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPIT 144 (537)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~ 144 (537)
+..++...++.|..+.+.....+++|++.+ |+++|..+.|++.|+|.++..++.++...+.||+.||++++..+.++
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~---dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF 88 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAA---DLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF 88 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 345566778888899999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHh----hhhhHHH
Q psy4866 145 TASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLG----SELSYMN 220 (537)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~----~~~~wr~ 220 (537)
.++++++++++||+.++++|++.|++.|..++...++..+..|+++|++++++...+..++.++|..++ ..+|||.
T Consensus 89 i~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~ 168 (394)
T COG2814 89 IVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRA 168 (394)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHH
Confidence 999999999999999999999999999999999999999999999999999999999888888776555 5579999
Q ss_pred HHHHHHHHHHHHHH-HhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchH
Q psy4866 221 YLTYSLIIPIIFTV-TFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNM 299 (537)
Q Consensus 221 ~~~~~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (537)
.|++.+.++++..+ .+..+| |+- .. .+.+.+.....+.+|++..
T Consensus 169 ~F~~ia~l~ll~~~~~~~~lP--~~~----------------~~-----------------~~~~~~~~~~~~~l~~p~v 213 (394)
T COG2814 169 TFLAIAVLALLALLLLWKLLP--PSE----------------IS-----------------GSLPGPLRTLLRLLRRPGV 213 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhCC--Ccc----------------CC-----------------CCCCcchhHHHHHhcCchH
Confidence 99999999988664 455677 200 00 0000001123344555554
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHH
Q psy4866 300 KAFVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSL 377 (537)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 377 (537)
+..++...+ .+.+.+...+|+..++++. +++. ...+....++++.++|+.++|++.|| +.|+.+.....+..+
T Consensus 214 ~~~l~~t~l----~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~ 288 (394)
T COG2814 214 LLGLLATFL----FMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLAL 288 (394)
T ss_pred HHHHHHHHH----HHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHH
Confidence 443333333 3344556666666666654 5553 44578888999999999999999999 888888888777777
Q ss_pred HHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHH
Q psy4866 378 FSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLF 457 (537)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 457 (537)
.++.+.+. ..+.+..+...+++++........ ......+. -++.+..+.+++....++|..+|..+.
T Consensus 289 ~~l~l~~~-----------~~~~~~~~~~~~~wg~a~~~~~~~-~~~~~a~~-~p~~~~~a~sl~~aa~nlgia~GA~lG 355 (394)
T COG2814 289 ALLALTFT-----------GASPALALALLFLWGFAFSPALQG-LQTRLARL-APDAADLAGSLNVAAFNLGIALGAALG 355 (394)
T ss_pred HHHHHHHh-----------cchHHHHHHHHHHHHHHhhhhhhH-HHHHhccc-CCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766553 223344444444444443332222 22344442 346789999999999999999999999
Q ss_pred HHHHHhhccchhhhHhhHHHHHHHHHHHhhc
Q psy4866 458 FLMDKHIGMYSNFLFGGVSSLVCTVYLYYFL 488 (537)
Q Consensus 458 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 488 (537)
|.+.|+.|+....++.+.+.+++.++.....
T Consensus 356 G~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~ 386 (394)
T COG2814 356 GLVLDALGYAATGWVGAALLLLALLLALLSA 386 (394)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888888888777664443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-44 Score=358.16 Aligned_cols=425 Identities=25% Similarity=0.430 Sum_probs=332.7
Q ss_pred HHHHhhhhhhhhhccchhhHHhhhcCCCCCCCC---------CChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHH
Q psy4866 70 TACIAAFTTGMSFAWSAPVLEELLSKESPIPMS---------PNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMT 140 (537)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---------~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~ 140 (537)
++.++.+.+|++.+..+...+...... ++..+ +.+.+++.++..+|..+|++++|+++||+|||++++++
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~ 82 (451)
T PF00083_consen 4 IASLGGFLFGYDLGLIGSFASLLGFLQ-FFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIIS 82 (451)
T ss_pred eeHHHHHHHHHHHHHHhhHHhhhhhhh-ccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccc
Confidence 345667889999988877766555211 12222 23468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh---hHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh-
Q psy4866 141 GPITTASWIIAMYSR---SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL- 216 (537)
Q Consensus 141 ~~l~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~- 216 (537)
.++..+++++.++++ |++.+.++|+++|++.|+..+....++.|..|+++|++..++.+.++.+|.+++..++..+
T Consensus 83 ~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~ 162 (451)
T PF00083_consen 83 ALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVS 162 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999887776432
Q ss_pred ---h---HHHHHHHHHHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhh-cccccc
Q psy4866 217 ---S---YMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSK-NVERTN 289 (537)
Q Consensus 217 ---~---wr~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 289 (537)
+ ||..+++.++++++..+..+++||||+|+..++|.+||++.++++++.+.. +++.++..+..++ ++.+.+
T Consensus 163 ~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 240 (451)
T PF00083_consen 163 YYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIE--DEEIEEIKAEKKESQESKAS 240 (451)
T ss_pred cccccccccccccccccccccccccccccccccceecccccccccccccccccccccc--ccccccccccccccccccee
Confidence 4 999999999999888888889999999999999999999999997655321 1222222111111 111356
Q ss_pred hHHhhcc-chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHH
Q psy4866 290 FREFMGR-SNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLF 368 (537)
Q Consensus 290 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 368 (537)
+++++++ ..+++..+...+..+..+.+.+....|.+.+++..+.+.+ .....+..+..+++.+++.++.||+|||+++
T Consensus 241 ~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~ 319 (451)
T PF00083_consen 241 WRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS-FLATLILGLVNFLGTLLAIFLIDRFGRRKLL 319 (451)
T ss_pred eeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 7777774 3356666666777777677777788888888877766533 3444556677788888888999999999999
Q ss_pred HHhhHHHHHHHHHHHH-HHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHH
Q psy4866 369 LVSSAGCSLFSFIAGL-YYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCT 447 (537)
Q Consensus 369 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 447 (537)
+.+..+.+++.+.++. ...... . +.......+....+....++.++.++.+.+..|.+|++.|+++.|+...+++
T Consensus 320 i~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~ 395 (451)
T PF00083_consen 320 IIGLLLMAICSLILGIIFFLGVS---S-SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGR 395 (451)
T ss_pred ccccccccccccccccccccccc---c-ccccccccceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 9998888887776651 111111 0 0011333344444455566667788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhHhhHHHHHHHHHHHhhccCCCCCCHHHHHHH
Q psy4866 448 TLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFLLETKGKTFNEIQYM 502 (537)
Q Consensus 448 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (537)
+++++++.+...+.+..+....+.+.++++++..++.++++|||++++++|++++
T Consensus 396 i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 396 IGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 9999999999988888775667888888888888888899999999999998775
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=294.34 Aligned_cols=385 Identities=14% Similarity=0.111 Sum_probs=268.9
Q ss_pred HHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHH
Q psy4866 64 FSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPI 143 (537)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l 143 (537)
+|.+.++++++.+++.++....+...|.+.+ |+|++..+.|++.+++.+++++++++.|+++||+|||+++..++++
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~ 82 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGK---DLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVL 82 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHh---hcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHH
Confidence 4556666777778888899999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh--------
Q psy4866 144 TTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE-------- 215 (537)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~-------- 215 (537)
++++++++++++|++.+++.|+++|++.+...+....++.|++|+++|+++++++..+..+|.++++.+++.
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 162 (412)
T TIGR02332 83 WGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM 162 (412)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999888754
Q ss_pred --hhHHHHHHHHHHHHHHHH-HHhhcccCChH---HHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccc
Q psy4866 216 --LSYMNYLTYSLIIPIIFT-VTFMFMPESPY---FYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTN 289 (537)
Q Consensus 216 --~~wr~~~~~~~~~~~~~~-~~~~~~~esp~---~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (537)
.+||+.|++.++++++.. +.++++||+|+ |+.++ +.+...+..+....+....+ +..+ ......+..
T Consensus 163 ~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~ 235 (412)
T TIGR02332 163 ALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEE----DKKALKEMIDNDQLTLEQPE-GAFA--HAAMPQRSM 235 (412)
T ss_pred CccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHH----HHHHHHHHHHhccccccccc-cccc--cccccHHHH
Confidence 389999999888876644 45567899984 22111 11111111110000000000 0000 000000112
Q ss_pred hHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CC-CChhHHHHHHHHHHHHHhhhHhhhhcccCCcH
Q psy4866 290 FREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSE--TF-LPSDYISILFAIILLVSIFPSTYYIDRAGRRV 366 (537)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 366 (537)
++++++ + .++...+.+++.....+.+..|+|.++++.+ .+ ...........++.+++.++.|+++||+++|+
T Consensus 236 ~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~ 310 (412)
T TIGR02332 236 LREIFT-P----AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERK 310 (412)
T ss_pred HHHhcC-h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccH
Confidence 233332 1 2333444444455557778889999998743 33 23445677788899999999999999999777
Q ss_pred HH-HHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHH
Q psy4866 367 LF-LVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINIL 445 (537)
Q Consensus 367 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 445 (537)
.. ....++..++. ++... .......+....+...+... ..+..+....|.+|++.|+++.|+.+..
T Consensus 311 ~~~~~~~~~~~~~~-~~~~~-----------~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~a~g~~~~~ 377 (412)
T TIGR02332 311 HHTALPYLFAAAGW-LLASA-----------TDHNLIQLLGIIMASMGSFS-AMAIFWTTPDQSISLQARAIAIAVINAT 377 (412)
T ss_pred HHHHHHHHHHHHHH-HHHHh-----------cCCHHHHHHHHHHHHHHhhh-hhhHHHhhcccccchHHHHHHHHHHHHh
Confidence 53 33333333322 22111 01111111122222222211 1233335556789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc-cchhhhHhhHH
Q psy4866 446 CTTLGLISYKLFFLMDKHIG-MYSNFLFGGVS 476 (537)
Q Consensus 446 ~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~ 476 (537)
+++|++++|.+.|.+.+..| |...+.+.+++
T Consensus 378 ~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 378 GNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred hhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 99999999999999999875 77666655443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=292.80 Aligned_cols=392 Identities=12% Similarity=0.089 Sum_probs=269.3
Q ss_pred HHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHH
Q psy4866 65 SFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPIT 144 (537)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~ 144 (537)
+.+.....++.+...++....+..+|.+.+ ++|+|..+.|++.+++.+++.+++++.|+++||+|||+++.++.++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~ 98 (434)
T PRK11663 22 RHILITMYLGYALFYFTRKSFNAAMPEMLA---DLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIAT 98 (434)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHH
Confidence 344444556666666777777888999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHH
Q psy4866 145 TASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMN 220 (537)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~ 220 (537)
+++.+++++++|++.+++.|++.|++.|..++...+++.|++|+++|++++++.+.+..+|.++++.+++. ++||+
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~ 178 (434)
T PRK11663 99 GIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRY 178 (434)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887765 48999
Q ss_pred HHHHHHHHHHHH-HHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHh-----h
Q psy4866 221 YLTYSLIIPIIF-TVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREF-----M 294 (537)
Q Consensus 221 ~~~~~~~~~~~~-~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 294 (537)
.|++.+++.++. ++..++++|+|++.......++ ++ +.. +..+ +.++.+.+.++. +
T Consensus 179 ~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~--------~~----~~~----~~~~--~~~~~~~~~~~~~~~~~~ 240 (434)
T PRK11663 179 GMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEW--------RH----DAL----ELAQ--QQEGAGLSRKEILTKYVL 240 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccc--------cc----ccc----ccch--hccccCCChhhhHHHHHh
Confidence 999988876654 3445567888743210000000 00 000 0000 000001122222 2
Q ss_pred ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCCC-ChhHHHHHHHHHHHHHhhhHhhhhccc--CCcHHH-H
Q psy4866 295 GRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRA--GRRVLF-L 369 (537)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~-~ 369 (537)
+++. ++...+..+........+..|.|.++.+ .+.+. .+........++.++++++.|+++||+ ++|+.. .
T Consensus 241 ~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~ 316 (434)
T PRK11663 241 LNPY----IWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNL 316 (434)
T ss_pred cChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHH
Confidence 2222 2222222222333345666788888854 45552 344667778889999999999999998 333332 2
Q ss_pred HhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHH
Q psy4866 370 VSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTL 449 (537)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 449 (537)
...+...+....+.... ...........+.++.+ ..+..........|.+|++.|+++.|+.+...++|
T Consensus 317 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 385 (434)
T PRK11663 317 IFAAGILLSVGSLWLMP----------FASYVMQAACFFTIGFF-VFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLG 385 (434)
T ss_pred HHHHHHHHHHHHHHHcc----------cccHHHHHHHHHHHHHH-HhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHH
Confidence 22222222221111110 01111111222222221 11111222356689999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccchhhhHhhHHHHHHHHHHHhhccCCC
Q psy4866 450 GLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFLLETK 492 (537)
Q Consensus 450 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (537)
.+++|.+.|++.|..|+...|.+.+++++++.+..+.+.++++
T Consensus 386 ~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 428 (434)
T PRK11663 386 AALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQA 428 (434)
T ss_pred HHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999998898888888877766655544433
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=262.26 Aligned_cols=413 Identities=16% Similarity=0.187 Sum_probs=317.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHH
Q psy4866 62 FLFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTG 141 (537)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~ 141 (537)
+.+|...+...++...+.+.....+-+.|.+.. .++.+..|..++......|..+++..+|.++|++|||+.+.+..
T Consensus 74 rfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~---~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~ 150 (528)
T KOG0253|consen 74 RFQWYLFFVAGMGWMADAMEMMLLSLILPALDE---VWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTF 150 (528)
T ss_pred cchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHh---hhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhH
Confidence 355666666667776666666666777788887 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hh
Q psy4866 142 PITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LS 217 (537)
Q Consensus 142 ~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~ 217 (537)
+...+..++.+.++|+..+.+.|.+.|+|.|+ .|...++-.|..|..+|+..+-.. ..+.+|.++...+... +|
T Consensus 151 l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~g 228 (528)
T KOG0253|consen 151 LVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFG 228 (528)
T ss_pred HHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999 788888999999999998887777 8899999988877654 59
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhH---------HHHHHHH----HHh-hh-
Q psy4866 218 YMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQV---------QSELQII----KQN-TS- 282 (537)
Q Consensus 218 wr~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~---------~~~~~~~----~~~-~~- 282 (537)
|||.+.....+..++....+++||||||+..+|++++|.+.++++.+.|+... ..+.++. .+. .+
T Consensus 229 wr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a 308 (528)
T KOG0253|consen 229 WRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSA 308 (528)
T ss_pred HHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhcc
Confidence 99999998877777778888999999999999999999999998877654221 1111111 111 11
Q ss_pred hcccccchHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC---C-----------------CC-ChhHHH
Q psy4866 283 KNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSE---T-----------------FL-PSDYIS 341 (537)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----------------~~-~~~~~~ 341 (537)
.++.+....+++.++.++..++....++...+. ++........+++... . +. ....-.
T Consensus 309 ~ke~rg~~~nLlsp~lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdl 387 (528)
T KOG0253|consen 309 AKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDL 387 (528)
T ss_pred ccccccchHhhcChHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHH
Confidence 122266778888877888777776666655444 3333333333333321 0 00 111335
Q ss_pred HHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccc
Q psy4866 342 ILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPL 421 (537)
Q Consensus 342 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (537)
.+..+..+.|.++.+++.||+|||+.+...++++++..+++... .......+..+..-.+.+.++ .+
T Consensus 388 litslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c------------~~rn~~tvllf~arafisg~f-qv 454 (528)
T KOG0253|consen 388 LITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTC------------KTRNAYTVLLFTARAFISGAF-QV 454 (528)
T ss_pred HHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh------------cCcchhHHHHHHHHHHHhchh-eE
Confidence 56788899999999999999999999999999888887776553 223334444455555555555 45
Q ss_pred hhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhHHHHHHHHHHHhhccCCCCCC
Q psy4866 422 FTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFLLETKGKT 495 (537)
Q Consensus 422 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (537)
.++|..|++|+..|+++.|.+.....+|+++.|.+. +........+..+++++++++.+...++--|+|+|.
T Consensus 455 aYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~ 526 (528)
T KOG0253|consen 455 AYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRS 526 (528)
T ss_pred EEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCC
Confidence 679999999999999999999999999999999988 444445566777888888888888767777888875
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=292.98 Aligned_cols=369 Identities=16% Similarity=0.179 Sum_probs=268.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHH
Q psy4866 63 LFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGP 142 (537)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~ 142 (537)
.++...+.+.++.+.++++.....+.+|.+.+ ++|+|+.+.+++.+++.++..++++++|+++||+|||++++++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~ 91 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKA---DLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIV 91 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 33444566777888899999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhH
Q psy4866 143 ITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSY 218 (537)
Q Consensus 143 l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~w 218 (537)
+.++++++++++++++.++++|+++|++.+...+....++.|++|+++|+++.++...+..+|.++++.+... .+|
T Consensus 92 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w 171 (426)
T PRK12307 92 AYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGW 171 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999877654 589
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccch
Q psy4866 219 MNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSN 298 (537)
Q Consensus 219 r~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (537)
|+.|++..+..++........||++++..++.+. .+ ++. .......+..++++++++.
T Consensus 172 ~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------~~-~~~---------~~~~~~~~~~~~~~~~~~~ 229 (426)
T PRK12307 172 RAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSG------------KG-KHS---------QSAWSVFSLSMKGLFNRAQ 229 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhc------------cc-ccc---------ccchhhhhHHHHHHHhhch
Confidence 9999986554444333333457765442211000 00 000 0000000123456666544
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHH
Q psy4866 299 MKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSL 377 (537)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 377 (537)
.+.........+ ..+.....+..++|.++++.+.+. .......+..++.+++.++.+++.||++||+.+..+.++..+
T Consensus 230 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~ 308 (426)
T PRK12307 230 FPLTLCVFIVLF-SIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFL 308 (426)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 443333222222 222223345667888888776642 234556667888999999999999999999988877766655
Q ss_pred HHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHH-hhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHH
Q psy4866 378 FSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFF-NLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKL 456 (537)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 456 (537)
..+.+... ..... ..+...+++.++ ..+..+....++.|.+|++.||+++|+.+...++++.++|.+
T Consensus 309 ~~~~~~~~-----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~ 376 (426)
T PRK12307 309 FIFPLFRI-----------PQDNY-LLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMA 376 (426)
T ss_pred HHHHHHHH-----------ccccH-HHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHH
Confidence 54433321 01111 122222333222 122333444778899999999999999999999999999999
Q ss_pred HHHHHHhhccchh
Q psy4866 457 FFLMDKHIGMYSN 469 (537)
Q Consensus 457 ~g~l~~~~g~~~~ 469 (537)
.|++.+..|+...
T Consensus 377 ~g~l~~~~g~~~~ 389 (426)
T PRK12307 377 ATWLGITMGLGAA 389 (426)
T ss_pred HHHHHHcccHHHH
Confidence 9999998886543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=295.89 Aligned_cols=390 Identities=13% Similarity=0.058 Sum_probs=266.9
Q ss_pred HHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHH
Q psy4866 64 FSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPI 143 (537)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l 143 (537)
.+.+.....++.+...++...+++..|.+.+ |+|++..+.|++.+++.+++++++++.|+++||+|||+++.+++++
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~ 103 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMIS---TYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLIL 103 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHH
Confidence 4445555666666677788888899999999 9999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHH-----HhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh---
Q psy4866 144 TTASWIIAMY-----SRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE--- 215 (537)
Q Consensus 144 ~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~--- 215 (537)
.+++.++.++ ++|++.+++.|+++|++.+...+...++++||+|+++||++++++..+.++|.++++.+...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~ 183 (467)
T PRK09556 104 SAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGAN 183 (467)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHH
Confidence 8777766665 58999999999999999999999999999999999999999999999999999998877643
Q ss_pred -h---hHHHHHHHHHHHHHHHH-HHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhccc-ccc
Q psy4866 216 -L---SYMNYLTYSLIIPIIFT-VTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVE-RTN 289 (537)
Q Consensus 216 -~---~wr~~~~~~~~~~~~~~-~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 289 (537)
+ +||..|.+.++++++.. +.+++.+++|+.. +..++ ++ ...+.. .+ + + +....++.. ...
T Consensus 184 ~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~---~~~~~-~~---~~~~~~-~~--~---~-~~~~~~~~~~~~~ 249 (467)
T PRK09556 184 YFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEEL---GWGKA-EE---IFGEPI-SE--E---D-KETESTDMTKWQI 249 (467)
T ss_pred hhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhc---CCCCh-hh---cccCcc-ch--h---h-hccccccCcHHHH
Confidence 1 58888888787776644 3444567776321 00000 00 000000 00 0 0 000000000 000
Q ss_pred h-HHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcH
Q psy4866 290 F-REFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRV 366 (537)
Q Consensus 290 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 366 (537)
+ +..++++.. +...+..++..........|.|.|+++ .+.+. ++........++.+++.++.|+++||+++|+
T Consensus 250 ~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~ 325 (467)
T PRK09556 250 FVEYVLKNPVI----WLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRR 325 (467)
T ss_pred HHHHHHcChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 1 123443333 333333333333455677889988865 45553 3446666778889999999999999999988
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHH
Q psy4866 367 LFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILC 446 (537)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 446 (537)
.......+..++...+... . ..+.+...+..++++.+. .+..........|.+|++.+|++.|+.+..+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g 394 (467)
T PRK09556 326 ALVACIALALIIFTLGVYQ---H-------ATSEYMYLASLFALGFLV-FGPQLLIGVAAVGFVPKKAIGVANGIKGTFA 394 (467)
T ss_pred hHHHHHHHHHHHHHHHHHH---h-------cCcHHHHHHHHHHHHHHH-hhHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Confidence 7665544333322222111 0 112222223333333222 1111122256679999999999999999999
Q ss_pred HH-HHHHHHHHHHHHHH------------hhccchhhhHhhHHHHHHHHHHH
Q psy4866 447 TT-LGLISYKLFFLMDK------------HIGMYSNFLFGGVSSLVCTVYLY 485 (537)
Q Consensus 447 ~~-g~~~~~~~~g~l~~------------~~g~~~~~~~~~~~~~~~~~~~~ 485 (537)
++ |.+++|.+.|.+.| ..||...|.+..++++++.+..+
T Consensus 395 ~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 395 YLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 97 77999999999999 56788888888777777765544
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=287.56 Aligned_cols=374 Identities=14% Similarity=0.132 Sum_probs=276.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHH
Q psy4866 63 LFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGP 142 (537)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~ 142 (537)
++|.+..++.+..+.++++....++..|.+.+ ++|.++.+.+++.+++.++..+++++.|+++||+|||+++.++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 88 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQ---EFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA 88 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 67778888888899999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhH
Q psy4866 143 ITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSY 218 (537)
Q Consensus 143 l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~w 218 (537)
+..++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..+++.++.. .+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 168 (406)
T PRK11551 89 LFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAW 168 (406)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888754 489
Q ss_pred HHHHHHHHHHHHHHH-HHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccc
Q psy4866 219 MNYLTYSLIIPIIFT-VTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRS 297 (537)
Q Consensus 219 r~~~~~~~~~~~~~~-~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (537)
|+.|++.+++.++.. +...++||+|++..++.+.++ + +...+..+++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----------------~---------------~~~~~~~~~~~ 217 (406)
T PRK11551 169 RHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQ----------------R---------------APVLRALFGEG 217 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchh----------------h---------------hhhHHHHhhhh
Confidence 999998877665544 445568998754322111000 0 00001111111
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHH
Q psy4866 298 NMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCS 376 (537)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 376 (537)
..+.. .......+......+....|.|.++++.+.+. ..+.......++.+++.++.|++.||+++|+.+..+.+...
T Consensus 218 ~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~ 296 (406)
T PRK11551 218 RATAT-LLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGIL 296 (406)
T ss_pred hhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11111 11111112222234556677888888877653 44566777788999999999999999999998877665555
Q ss_pred HHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHH
Q psy4866 377 LFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKL 456 (537)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 456 (537)
++.+.+... ...+...+..++.+.+.. +..+...++..|.+|++.|+++.|+.+...++|.+++|.+
T Consensus 297 ~~~~~~~~~------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~ 363 (406)
T PRK11551 297 ASLAALAAA------------PSFAGMLLAGFAAGLFVV-GGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLL 363 (406)
T ss_pred HHHHHHHhc------------CcHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhh
Confidence 554444321 122223333333443332 2345556888999999999999999999999999999999
Q ss_pred HHHHHHhhccch-hhhHhhHHHHHHHHHH
Q psy4866 457 FFLMDKHIGMYS-NFLFGGVSSLVCTVYL 484 (537)
Q Consensus 457 ~g~l~~~~g~~~-~~~~~~~~~~~~~~~~ 484 (537)
.|.+.+..+... .+.....+.+++.++.
T Consensus 364 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (406)
T PRK11551 364 AGQLLALGRSTVGVIGASIPVILVAALAA 392 (406)
T ss_pred HhhhhccCCchHHHHHHHHHHHHHHHHHH
Confidence 999998755443 3334444444444433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=283.14 Aligned_cols=367 Identities=13% Similarity=0.106 Sum_probs=265.8
Q ss_pred HHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHH
Q psy4866 64 FSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPI 143 (537)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l 143 (537)
+|.....+.++.+..........+.+|.+.+ ++|.|..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 83 (390)
T PRK03545 7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQ---SFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVL 83 (390)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHcchHHHHh---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 3333444444445544444456677899999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHH
Q psy4866 144 TTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYM 219 (537)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr 219 (537)
.+++++++++++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|.+++. ++||
T Consensus 84 ~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~ 163 (390)
T PRK03545 84 FIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWR 163 (390)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999888754 5999
Q ss_pred HHHHHHHHHHHHHHHH-hhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccch
Q psy4866 220 NYLTYSLIIPIIFTVT-FMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSN 298 (537)
Q Consensus 220 ~~~~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (537)
+.|++.++++++..+. ...+||.|+ ++ . + .....++.++++.
T Consensus 164 ~~f~~~~~~~~l~~~~~~~~~~~~~~-----~~--------------~--~----------------~~~~~~~~~~~~~ 206 (390)
T PRK03545 164 TTFLAIGGGALITLLLLIKLLPLLPS-----EH--------------S--G----------------SLKSLPLLFRRPA 206 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCC-----CC--------------c--c----------------hHHHHHHHHhCcH
Confidence 9999998887665433 344565531 00 0 0 0011234454444
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHH
Q psy4866 299 MKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCS 376 (537)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 376 (537)
.+......++.... ......+.+.++++ .+.+. ..+....+..++.++++++.+++.||+++|... .+..+..
T Consensus 207 ~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~ 281 (390)
T PRK03545 207 LVSLYLLTVVVVTA----HFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLL 281 (390)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHH
Confidence 33322222222211 22334455555554 35543 344666777889999999999999999987654 3433333
Q ss_pred HHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHH
Q psy4866 377 LFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKL 456 (537)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 456 (537)
++...+... ..+.+...+...+.+.+... ..+.....+.+..| +.+++++|+.+...++|..+||.+
T Consensus 282 ~~~~~l~~~-----------~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~ 348 (390)
T PRK03545 282 VCLLLLLPA-----------ANSEWHLSVLSIFWGIAIMC-IGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALL 348 (390)
T ss_pred HHHHHHHHH-----------hchHHHHHHHHHHHHHHHhc-chHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332221 12223334444445554432 33334466677766 578999999999999999999999
Q ss_pred HHHHHHhhccchhhhHhhHHHHHHHHHHHhhc
Q psy4866 457 FFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFL 488 (537)
Q Consensus 457 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 488 (537)
.|.+.+..|++..+.+.+++.+++.++.+...
T Consensus 349 ~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 349 GNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999888888888877765554
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=293.36 Aligned_cols=403 Identities=13% Similarity=0.096 Sum_probs=272.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHH
Q psy4866 63 LFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGP 142 (537)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~ 142 (537)
.+|.....+.++.++++++.....+.+|.+.+ ++|+|..+.+++.+.+.++..++.++.|+++||+|||++++++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 93 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQG---EFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 34445666777788888999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhH
Q psy4866 143 ITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSY 218 (537)
Q Consensus 143 l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~w 218 (537)
+.+++.+++++++|++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|.++++.+++. ++|
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w 173 (496)
T PRK03893 94 LFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGW 173 (496)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888765 489
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHH----hhhhcccccchH---
Q psy4866 219 MNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQ----NTSKNVERTNFR--- 291 (537)
Q Consensus 219 r~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--- 291 (537)
|+.|++.++..++.++....+||++++..++++.++..+..+.....+............. ..........+.
T Consensus 174 ~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (496)
T PRK03893 174 RALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAV 253 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHH
Confidence 9999886655555545555678887653322221111111111111110000000000000 000000000000
Q ss_pred ----------Hh-hc-cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hcCCCC-ChhHHHHHHHHHHHHHhhhHhh
Q psy4866 292 ----------EF-MG-RSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFA-SSETFL-PSDYISILFAIILLVSIFPSTY 357 (537)
Q Consensus 292 ----------~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~g~ 357 (537)
.. .+ +..+++.........+..+........++|.+++ ..+.+. ..+.......++.+++.++.|+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~ 333 (496)
T PRK03893 254 LGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGF 333 (496)
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00 0111111111111111111112234567788885 555553 4456777788899999999999
Q ss_pred hhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccch
Q psy4866 358 YIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAV 437 (537)
Q Consensus 358 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 437 (537)
+.||+++|+.+..+..+..+..+.+... ............+...+.+.+..+....++.|.+|++.|++
T Consensus 334 l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 402 (496)
T PRK03893 334 LGDWLGTRKAYVCSLLISQLLIIPVFAI-----------GGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAA 402 (496)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHhhc-----------cccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhc
Confidence 9999999998887765555444333221 01111222222222222223334455578889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhHHHHH
Q psy4866 438 SCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLV 479 (537)
Q Consensus 438 ~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 479 (537)
++|+.+....+|+.++|.+.|.+.+..|+...+...++.+.+
T Consensus 403 ~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 403 GLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999988776555544433
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=285.23 Aligned_cols=382 Identities=14% Similarity=0.109 Sum_probs=271.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHH
Q psy4866 62 FLFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTG 141 (537)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~ 141 (537)
+++|.....+.++.+.++++....+++.|.+.+ ++|.+..+.+++.+++.++..+++++.|+++||+|||++++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~ 84 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAG---EFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSI 84 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 456667777888899999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh----h
Q psy4866 142 PITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL----S 217 (537)
Q Consensus 142 ~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~----~ 217 (537)
++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|.++++.++..+ +
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 164 (405)
T TIGR00891 85 VLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG 164 (405)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998887652 4
Q ss_pred --HHHHHHHHHHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhc
Q psy4866 218 --YMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMG 295 (537)
Q Consensus 218 --wr~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (537)
||+.|++.++..++..+....+||++++...+++.++..+..++..+... ..+...+ ......++.
T Consensus 165 ~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---------~~~~~~~~~-- 232 (405)
T TIGR00891 165 DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEH-RIANIVM---------TLAAAMVQS-- 232 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccch-hhhhhhh---------hhhHHhhhh--
Confidence 99999987777666666667789987664333222222111111111100 0000000 000011111
Q ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhH
Q psy4866 296 RSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSA 373 (537)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 373 (537)
....+......................+.|.++.+ .+.+. +.+.......++.+++.++.+++.||++||+.+..+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~ 312 (405)
T TIGR00891 233 AGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLL 312 (405)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHH
Confidence 11111111111111111111233444566766654 35542 34456677888999999999999999999998877766
Q ss_pred HHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHH
Q psy4866 374 GCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLIS 453 (537)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 453 (537)
+..+..+.+... ....+...+..++.+.+.. +..++...++.|.+|++.|++++|+.+.+.++|..++
T Consensus 313 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g 380 (405)
T TIGR00891 313 AGQLLIIPVFAI-----------GANVAVLGLGLFFQQMLVQ-GIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALA 380 (405)
T ss_pred HHHHHHHHHHHh-----------CCchHHHHHHHHHHHHHHc-cchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHH
Confidence 543332222111 1122222333233333333 3334555788999999999999999999999999999
Q ss_pred HHHHHHHHHhhc-cchhh
Q psy4866 454 YKLFFLMDKHIG-MYSNF 470 (537)
Q Consensus 454 ~~~~g~l~~~~g-~~~~~ 470 (537)
|.+.|.+.|..| |...+
T Consensus 381 ~~~~g~l~~~~g~~~~~~ 398 (405)
T TIGR00891 381 PIIGALLAQRLDEYGTAL 398 (405)
T ss_pred HHHHHHHHHhccccchhH
Confidence 999999999988 65443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=284.54 Aligned_cols=371 Identities=13% Similarity=0.087 Sum_probs=249.1
Q ss_pred HHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCC---CCCChhhHH---HHHHHHHHhhhhhhhHHhhhhhhhhHHH
Q psy4866 64 FSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIP---MSPNEGSWV---VAIIEIGNYLSPIPAGMLVNRIGRKWSL 137 (537)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~~~---~s~~~~~~~~~~~~~G~l~dr~Grr~~l 137 (537)
++..+...+++.+++.++...++...|.+.+ +++ .+..+.+.. .+..+++..++++++|+++||+|||+++
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l 96 (432)
T PRK10406 20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFAH---IFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSM 96 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4445566678888999999999999999999 774 445544444 4444555569999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHH--------HHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHH
Q psy4866 138 LMTGPITTASWIIAMYSRSVL--------GLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYT 209 (537)
Q Consensus 138 ~~~~~l~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~ 209 (537)
.++.++++++++++++++++. .++++|+++|++.|+.++...+++.|++|+++|+++.++...+...|.+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~ 176 (432)
T PRK10406 97 LISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLA 176 (432)
T ss_pred HHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHH
Confidence 999999999999999998874 588999999999999999999999999999999999999888888888877
Q ss_pred HHHhh------------hhhHHHHHHHHHHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHH
Q psy4866 210 YVLGS------------ELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQII 277 (537)
Q Consensus 210 ~~l~~------------~~~wr~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 277 (537)
+.+.. .++||+.|++.++++++.......+||+|++..+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~----------------------------- 227 (432)
T PRK10406 177 LLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETR----------------------------- 227 (432)
T ss_pred HHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHh-----------------------------
Confidence 65432 3589999999888887766666667888642100
Q ss_pred HHhhhhcccccchHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCCC-ChhHHHHHHHHHHHHHhhhH
Q psy4866 278 KQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPS 355 (537)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~ 355 (537)
+. +++.+++++++++..+...+ ...+.....++.+..|+|.++.+ .+.+. +......+..+...++.++.
T Consensus 228 -~~----~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~ 299 (432)
T PRK10406 228 -AL----KEAGSLKGLWRNRRAFIMVL---GFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLI 299 (432)
T ss_pred -hh----cccccHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00223555665332222111 11222223355677788988865 35542 23345555566777888889
Q ss_pred hhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCcccc
Q psy4866 356 TYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMK 435 (537)
Q Consensus 356 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 435 (537)
|+++||++||+.+....++..+....+.... .. .......+....+.....+. ..+..+.+..|.+|++.|
T Consensus 300 G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~fp~~~r 370 (432)
T PRK10406 300 GALSDKIGRRTSMLCFGSLAALFTVPILSAL--QN------VSSPYAAFGLVMCALLIVSF-YTSISGILKAEMFPAQVR 370 (432)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHHHHHHH--Hc------CCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCcc
Confidence 9999999999887766554433332221111 00 01112111111111122222 223345788999999999
Q ss_pred chhhHHHHHHHHH-HHHHHHHHHHHHHHhhccch-hhhHhhHHHHHHHHHH
Q psy4866 436 AVSCAVINILCTT-LGLISYKLFFLMDKHIGMYS-NFLFGGVSSLVCTVYL 484 (537)
Q Consensus 436 ~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g~~~-~~~~~~~~~~~~~~~~ 484 (537)
++++|+.+..+++ .+...|.+.+.+ +..|.+. .+++.++..+++.+..
T Consensus 371 ~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~ 420 (432)
T PRK10406 371 ALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVS 420 (432)
T ss_pred chhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999988765 344577777754 5556443 4444445555554444
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=276.21 Aligned_cols=429 Identities=16% Similarity=0.130 Sum_probs=315.4
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCC-----CCCChhhHHHHHHHHHHhhhhhhhHHhhhhh
Q psy4866 57 LHTVLFLFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIP-----MSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI 131 (537)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~ 131 (537)
.....|+....+.++.++.|+++|+...++.+.|.+...+++-. .++...+.+..+..+|..+|+++.|++.||+
T Consensus 32 ~~g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~ 111 (538)
T KOG0252|consen 32 SEGLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF 111 (538)
T ss_pred ccchhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34556788889999999999999999999999988877544222 4556778999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHH
Q psy4866 132 GRKWSLLMTGPITTASWIIAMYSR-------SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHL 204 (537)
Q Consensus 132 Grr~~l~~~~~l~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 204 (537)
|||+++...++++.+++++++++. -.+++.+.|++.|+|.|+-+|...+..+|...+++||...+...+..++
T Consensus 112 GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~ 191 (538)
T KOG0252|consen 112 GRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGF 191 (538)
T ss_pred cchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecch
Confidence 999999999999999999888754 2477889999999999999999999999999999999999888777777
Q ss_pred HHHHHHHHhhhh-------------------hHHHHHHHHHHHHHHHHHHhhcccCChHHHHHhC-CHHHHHHHHHhhcC
Q psy4866 205 GILYTYVLGSEL-------------------SYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKN-QEGKAIESLKWLRN 264 (537)
Q Consensus 205 G~~i~~~l~~~~-------------------~wr~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~-~~~~a~~~~~~~~~ 264 (537)
|.+.|.+++-.+ -||..+.+.++++++.+...+.+|||++|-.... +.+.|. ....+
T Consensus 192 GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~~k 268 (538)
T KOG0252|consen 192 GILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA---GDMKK 268 (538)
T ss_pred hHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---hcccc
Confidence 777665554321 3999999999999998888899999999864333 233332 22222
Q ss_pred CChhhHHHHHHHHHHhhhhc-ccccc---hHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCChh--
Q psy4866 265 KTADQVQSELQIIKQNTSKN-VERTN---FREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSD-- 338 (537)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 338 (537)
....+ .+..+...... ..+.+ +...+..+.-+ .++......+..-..++....+...+++..+......
T Consensus 269 ~~~~~----~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~-~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~ 343 (538)
T KOG0252|consen 269 VLSVD----IEAESTAESDVPPPSNSFGLFSRLFLRWHGK-HLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTY 343 (538)
T ss_pred ccccc----cchhhccccCCCCcccccchHHHHHHHHHHH-HHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchH
Confidence 11111 11111111111 11222 22222222222 3333444444444446677777788887665542111
Q ss_pred --------HHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHH
Q psy4866 339 --------YISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLL 410 (537)
Q Consensus 339 --------~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (537)
....+.....++|..+..+++|++|||+..+.+++++.+..+.++..+.. ........+...+.
T Consensus 344 ~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~--------~~~~~Gf~v~y~l~ 415 (538)
T KOG0252|consen 344 HELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ--------LENTIGFVVLYSLT 415 (538)
T ss_pred HHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccc--------ccccCceeehHHHH
Confidence 11222333444577778889999999999999999999988888764321 11223344555556
Q ss_pred HHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH-----hhccchhhhHhhHHHHHHHHHHH
Q psy4866 411 GVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK-----HIGMYSNFLFGGVSSLVCTVYLY 485 (537)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-----~~g~~~~~~~~~~~~~~~~~~~~ 485 (537)
.++..++-+...+.+.+|.+|++.|++..|+....+-.|++++...+.++.+ ..|....+++++++++++.++.
T Consensus 416 ~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T- 494 (538)
T KOG0252|consen 416 FFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT- 494 (538)
T ss_pred HHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee-
Confidence 6666777777778899999999999999999999999999999999999999 7788899999999999988776
Q ss_pred hhccCCCCCCHHHHHHH
Q psy4866 486 YFLLETKGKTFNEIQYM 502 (537)
Q Consensus 486 ~~~~~~~~~~~~~~~~~ 502 (537)
+++||+++++++|++++
T Consensus 495 ~l~pEtk~~~leei~~e 511 (538)
T KOG0252|consen 495 LLIPETKGKSLEEISNE 511 (538)
T ss_pred EEeecccccCHHHhcCh
Confidence 56779999999888443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=278.63 Aligned_cols=372 Identities=11% Similarity=0.028 Sum_probs=265.4
Q ss_pred HHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHH
Q psy4866 64 FSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPI 143 (537)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l 143 (537)
.|......+.+.+.... ....++.+|.+++ |+|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~-~~~~~~~lp~i~~---~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l 83 (393)
T PRK09705 8 NFMLLVLVLIGLNMRPL-LTSVGPLLPQLRQ---ASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLL 83 (393)
T ss_pred HHHHHHHHHHHHHcchh-hhccchhHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHH
Confidence 34444445555444333 3567899999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh-----hhH
Q psy4866 144 TTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE-----LSY 218 (537)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~-----~~w 218 (537)
++++.+++++++|++.++++|+++|++.+...+....++.+++| ++|+++++++..+..+|..+++.++.. .+|
T Consensus 84 ~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w 162 (393)
T PRK09705 84 IAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETW 162 (393)
T ss_pred HHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 99999999999999999999999999999999999999999997 779999999988887777777766654 279
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-cCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccc
Q psy4866 219 MNYLTYSLIIPIIFTVTFMFM-PESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRS 297 (537)
Q Consensus 219 r~~~~~~~~~~~~~~~~~~~~-~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (537)
|+.+.+.++..++..+.++.. ++.|+ . + +++ +...++.++++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~--~------------~~~--~~~~~~~l~~~ 205 (393)
T PRK09705 163 YQTLAWWALPAVVALFAWWWQSAREVA---------------------S--S------------HKT--TTTPVRVVFTP 205 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCc---------------------c--c------------cCC--CcCCcccccCH
Confidence 998877666554433333222 11110 0 0 000 00112222222
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHH
Q psy4866 298 NMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCS 376 (537)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 376 (537)
..+...+ ..+....++.....|.|.++++.+.+. ..+....+.+++.++++++.+++.||+++|+....+..+..
T Consensus 206 ~~~~l~~----~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~ 281 (393)
T PRK09705 206 RAWTLGV----YFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQL 281 (393)
T ss_pred hHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 2222222 222223345567778888888876653 35577788899999999999999999999998888877666
Q ss_pred HHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccC-CccccchhhHHHHHHHHHHHHHHHH
Q psy4866 377 LFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYF-SSNMKAVSCAVINILCTTLGLISYK 455 (537)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~~~~~ 455 (537)
++..++... +..... ....+.+.+.+... +.......+.. |++.+++..|+.+...++++.++|.
T Consensus 282 ~~~~~~~~~-----------~~~~~~--~~~~l~g~g~g~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~ 347 (393)
T PRK09705 282 VGFCGFIWL-----------PLQLPV--LWAMVCGLGLGGAF-PLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPW 347 (393)
T ss_pred HHHHHHHHc-----------cchHHH--HHHHHHHHhccchH-HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665544321 111111 12233344443332 33434555665 4678899999999999999999999
Q ss_pred HHHHHHHhhc-cchhhhHhhHHHHHHHHHHHhhccCCCCCC
Q psy4866 456 LFFLMDKHIG-MYSNFLFGGVSSLVCTVYLYYFLLETKGKT 495 (537)
Q Consensus 456 ~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (537)
+.|++.|..| +...|.+.++++++..+....+.+|++++.
T Consensus 348 ~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 348 FSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 9999999987 455566666666666666666777776553
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=280.06 Aligned_cols=380 Identities=15% Similarity=0.128 Sum_probs=256.9
Q ss_pred HHHHHHHHHhhhhhhhhhccchhhHHh-hhcCCCCC--CCCCChhhHHH-----HHHHHHHhhhhhhhHHhhhhhhhhHH
Q psy4866 65 SFLCVTACIAAFTTGMSFAWSAPVLEE-LLSKESPI--PMSPNEGSWVV-----AIIEIGNYLSPIPAGMLVNRIGRKWS 136 (537)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~s~~~~~~~~-----s~~~~~~~~~~~~~G~l~dr~Grr~~ 136 (537)
+.+.....++.+.++++....+.+.|. +.+ ++ +.++. .+++. ++.+++..+++++.|+++||+|||++
T Consensus 21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~ 96 (438)
T PRK09952 21 RRAALGSFAGAVVDWYDFLLYGITAALVFNR---EFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRM 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHH
Confidence 345667777889999999998888775 444 44 56655 46554 34556778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHH--------HHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHH
Q psy4866 137 LLMTGPITTASWIIAMYSRSVL--------GLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILY 208 (537)
Q Consensus 137 l~~~~~l~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i 208 (537)
++++.++++++++++++++|++ .++++|+++|++.|+.++....++.|++|+++|++..+....+..+|.++
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l 176 (438)
T PRK09952 97 LMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLL 176 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 58889999999999999999999999999999999999999999999988
Q ss_pred HHHHhh------------hhhHHHHHHHHHHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHH
Q psy4866 209 TYVLGS------------ELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQI 276 (537)
Q Consensus 209 ~~~l~~------------~~~wr~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 276 (537)
+..+.. .++||+.|++.+++.++........||+|+|...+++.++.
T Consensus 177 ~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~--------------------- 235 (438)
T PRK09952 177 STGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAA--------------------- 235 (438)
T ss_pred HHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccc---------------------
Confidence 865542 35899999998887766555556689998664332111000
Q ss_pred HHHhhhhcccccchH-HhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCCCCh-hHHHHHHHHHHHHHhh
Q psy4866 277 IKQNTSKNVERTNFR-EFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETFLPS-DYISILFAIILLVSIF 353 (537)
Q Consensus 277 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~ 353 (537)
+.+.+.. .+++++..+.. .... .+......+....|.|.++++. +.+... .....+.++..+++.+
T Consensus 236 --------~~~~~~~~~l~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~ 304 (438)
T PRK09952 236 --------KKRIPVIEALLRHPGAFLK--IIAL-RLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIP 304 (438)
T ss_pred --------cccCCHHHHHHHchHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0011111 12222222211 1111 1222223455666777777543 433221 1334455667788888
Q ss_pred hHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCcc
Q psy4866 354 PSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSN 433 (537)
Q Consensus 354 ~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 433 (537)
+.|+++||++||+.+..+.++..++.+.+.... .. ....+..+...++.+.+.+.. .+..+++..|.+|++
T Consensus 305 ~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~e~~p~~ 375 (438)
T PRK09952 305 CFAWLADRFGRRRVYITGALIGTLSAFPFFMAL--EA------QSIFWIVFFSIMLANIAHDMV-VCVQQPMFTEMFGAS 375 (438)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--Hc------CChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCcc
Confidence 999999999999988877665544433322211 00 011222222233333443332 344568899999999
Q ss_pred ccchhhHHHHHHHH-HHHHHHHHHHHHHHHhhc--cchhhhHhhHHHHHHHHHHHhhccC
Q psy4866 434 MKAVSCAVINILCT-TLGLISYKLFFLMDKHIG--MYSNFLFGGVSSLVCTVYLYYFLLE 490 (537)
Q Consensus 434 ~~~~~~g~~~~~~~-~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (537)
.|+++.|+.+.... +++.++|.+.+++.+..+ |...+.+.+++.+++.+.. +..++
T Consensus 376 ~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~~~ 434 (438)
T PRK09952 376 YRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-LLMKD 434 (438)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHccc
Confidence 99999999776654 899999999999988543 5555666666666665554 34444
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=276.44 Aligned_cols=347 Identities=12% Similarity=0.120 Sum_probs=240.0
Q ss_pred hhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy4866 81 SFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGL 160 (537)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l 160 (537)
....+++.+|.+.+ |+|+|..+.|++.+++.+++.+++++.|+++||+|||+++..+......+.+....++|++.+
T Consensus 6 ~~~~~~~~lp~i~~---~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (368)
T TIGR00903 6 IWVTFSPVLSLVAE---DIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWL 82 (368)
T ss_pred HHHHHHhhHHHHHH---HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 34457889999999 999999999999999999999999999999999999998776665555544333334799999
Q ss_pred HHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHH-HH
Q psy4866 161 YVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL----SYMNYLTYSLIIPIIFT-VT 235 (537)
Q Consensus 161 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~----~wr~~~~~~~~~~~~~~-~~ 235 (537)
+++|+++|++.+. .+.....++|++|+++|++++++...+..+|.+++++++..+ +||+.|++.++++++.. +.
T Consensus 83 ~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~ 161 (368)
T TIGR00903 83 LACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILV 161 (368)
T ss_pred HHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 9999999999986 455666679999999999999999999999999998887664 99999999888776644 45
Q ss_pred hhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHHHHHHHHhh
Q psy4866 236 FMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFT 315 (537)
Q Consensus 236 ~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (537)
++++||+|++. ++ .. +.+ +. ..+++++++++..+. ..+..++...
T Consensus 162 ~~~lp~~p~~~---~~-------------~~--~~~----~~---------~~~~~~ll~~~~~~~----~~~~~~~~~~ 206 (368)
T TIGR00903 162 LAALPALPFQA---AE-------------GF--GFK----DA---------VKEFGALAGRKDLWI----IGAILGFGVA 206 (368)
T ss_pred HHHcCCCCCCC---CC-------------Cc--chH----HH---------HHHHHHHHcChhHHH----HHHHHHHHHH
Confidence 56789998541 00 00 000 00 012456666555433 3333444444
Q ss_pred hHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhhHhhhhcccCCc---HHHHH-hhHHHHHHHHHHHHHHHhhhc
Q psy4866 316 GVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRR---VLFLV-SSAGCSLFSFIAGLYYYVTIE 391 (537)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~ 391 (537)
..+.+..|+|.++++.+.+........+. .+.+.+..++++||..|| +.... ...+.++....+...
T Consensus 207 ~~~~~~~wlp~~L~~~g~s~~~~~~~~l~---~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~------ 277 (368)
T TIGR00903 207 LFDNLAIWLEAALRPAGLEDIAGDAVALA---ILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE------ 277 (368)
T ss_pred HHHHHHHHHHHHHHHCCCChHHHHHHHHH---HHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc------
Confidence 56677889999998877653323333333 334444457888887654 32222 222223222222211
Q ss_pred cccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Q psy4866 392 LQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFL 471 (537)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~ 471 (537)
...+..+....+.+.+. ....+..+++..|.+|++.|+++.|+.+..+++++.++|.+.+.+.. |....|.
T Consensus 278 ------~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~ 348 (368)
T TIGR00903 278 ------LNRLALFAFIGIAGLLM-LPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFT 348 (368)
T ss_pred ------cccHHHHHHHHHHHHhh-hhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHH
Confidence 12222222333333332 22334456889999999999999999999999999999999988773 6666788
Q ss_pred HhhHHHHHHHHHH
Q psy4866 472 FGGVSSLVCTVYL 484 (537)
Q Consensus 472 ~~~~~~~~~~~~~ 484 (537)
++++..+++.+..
T Consensus 349 ~~~~~~~i~~~~~ 361 (368)
T TIGR00903 349 FLAILITIAFAIA 361 (368)
T ss_pred HHHHHHHHHHHHH
Confidence 8877777777665
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=274.27 Aligned_cols=354 Identities=16% Similarity=0.157 Sum_probs=239.5
Q ss_pred HHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHH-HHH-----HHHHhhhhhhhHHhhhhhhhhHHHHHH
Q psy4866 67 LCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVV-AII-----EIGNYLSPIPAGMLVNRIGRKWSLLMT 140 (537)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-s~~-----~~~~~~~~~~~G~l~dr~Grr~~l~~~ 140 (537)
......++.+++.+|...+++..|.+.+ +++.++.+.+.+. +.. .++..+++++.|+++||+|||++++.+
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~ 92 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAK---TFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT 92 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence 5677788999999999999999999999 9998888765443 332 233357899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHH--------HHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHH
Q psy4866 141 GPITTASWIIAMYSRSVL--------GLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVL 212 (537)
Q Consensus 141 ~~l~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l 212 (537)
.+++.+++++++++++++ .++++|+++|++.+...+....+++|++|+++|++++++...+..+|..+++.+
T Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~ 172 (434)
T PRK15075 93 LSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALL 172 (434)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 468899999999999999899999999999999999999888777777666555
Q ss_pred hhh------------hhHHHHHHHHHHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHh
Q psy4866 213 GSE------------LSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQN 280 (537)
Q Consensus 213 ~~~------------~~wr~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (537)
+.. ++||+.|++..+..++........||++++..++ +
T Consensus 173 g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~-----------------------------~- 222 (434)
T PRK15075 173 GYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK-----------------------------H- 222 (434)
T ss_pred HHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh-----------------------------h-
Confidence 432 5899999986554333322223344443211000 0
Q ss_pred hhhcccccchHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCCC-ChhHHHHHHHHHHHHHhhhHhhh
Q psy4866 281 TSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYY 358 (537)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l 358 (537)
+.+.+..+++..++ + +..+...+..+......+.+..|.|.++++ .+.+. +......+..++.+++.++.|++
T Consensus 223 --~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 297 (434)
T PRK15075 223 --RPSMREIFRSLAAN--W-RIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGAL 297 (434)
T ss_pred --ccccccHHHHHHHh--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001111111111 1 112222222222334466778889999876 46653 33456667788889999999999
Q ss_pred hcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchh
Q psy4866 359 IDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVS 438 (537)
Q Consensus 359 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 438 (537)
+||++||+.+..+..+..+......... .. ............+.+.+.+. ..+..+.+..|.+|++.|+++
T Consensus 298 ~Dr~g~r~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~e~~p~~~rg~~ 368 (434)
T PRK15075 298 SDRIGRRPVLIAFTVLAILTAYPALSWL-VA-------APSFARMLAVELWLSFLYGS-YNGAMVVALTEVMPAEVRTAG 368 (434)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHH-Hc-------CCchHHHHHHHHHHHHHHHH-HHhhHHHHHHHHCCCCccchh
Confidence 9999999987766544332221111110 00 11111122222233333333 333445788999999999999
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHhhccc
Q psy4866 439 CAVINILCTT-LGLISYKLFFLMDKHIGMY 467 (537)
Q Consensus 439 ~g~~~~~~~~-g~~~~~~~~g~l~~~~g~~ 467 (537)
.++.+..... ++.++|.+.|.+.|..|+.
T Consensus 369 ~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 369 FSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred eeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 9997666554 5888999999999988864
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=273.06 Aligned_cols=387 Identities=11% Similarity=0.068 Sum_probs=255.6
Q ss_pred HHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHH
Q psy4866 65 SFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPIT 144 (537)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~ 144 (537)
|.++....+.......+....+..+|.+.+ + |++..+.+++.+++.++..++++++|+++||+|||++++++.++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~---~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~ 103 (452)
T PRK11273 28 WQIFLGIFFGYAAYYLVRKNFALAMPYLVE---Q-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 103 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---c-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHH
Confidence 334444444455555554556677888887 7 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh----hHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHH-HHHHHhh----h
Q psy4866 145 TASWIIAMYSR----SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGIL-YTYVLGS----E 215 (537)
Q Consensus 145 ~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-i~~~l~~----~ 215 (537)
+++.+++++++ +++.+++.|++.|++.+...+.....+.|++|+++|++++++++.+.++|.. .+++++. .
T Consensus 104 ~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 183 (452)
T PRK11273 104 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF 183 (452)
T ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 99999888764 7888899999999999988888888899999999999999999999998864 4554432 2
Q ss_pred hhHHHHHHHHHHHHHHH-HHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHH--
Q psy4866 216 LSYMNYLTYSLIIPIIF-TVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-- 292 (537)
Q Consensus 216 ~~wr~~~~~~~~~~~~~-~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 292 (537)
.+||+.|++.+++.++. ++..+++||+|+....+ +.++.+ .+. .++ .++ .+.++.+.++
T Consensus 184 ~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~-------~~~----~~~---~~~---~~~~~~~~~~~~ 245 (452)
T PRK11273 184 NDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLP-PIEEYK-------NDY----PDD---YNE---KHEQELTAKQIF 245 (452)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCC-Chhhhh-------hcc----ccc---ccc---ccCCCccHHHHH
Confidence 38999999988876664 45566778887431100 000000 000 000 000 0000111222
Q ss_pred ---hhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCC-CChhHHHHHHHHHHHHHhhhHhhhhccc--CCc
Q psy4866 293 ---FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETF-LPSDYISILFAIILLVSIFPSTYYIDRA--GRR 365 (537)
Q Consensus 293 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~ 365 (537)
+++++..+... +..+......+....|.|.++++. +.+ ...+....+..++.+++.++.|+++||+ +||
T Consensus 246 ~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~ 321 (452)
T PRK11273 246 MQYVLPNKLLWYIA----IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR 321 (452)
T ss_pred HHHHHcChHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 33333333222 222222223456677889999864 554 2344556677788889999999999999 444
Q ss_pred HHHH-HhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHH
Q psy4866 366 VLFL-VSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINI 444 (537)
Q Consensus 366 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 444 (537)
+... ....+..++.+.+... . ....+...+....++.+.. +.......+..|.+|++.||+++|+.+.
T Consensus 322 ~~~~~~~~~l~~~~~~~~~~~---~-------~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 390 (452)
T PRK11273 322 GATGVFFMTLVTIATIVYWLN---P-------AGNPTVDMACMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGL 390 (452)
T ss_pred chHHHHHHHHHHHHHHHHHHh---c-------ccChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcChhhhhhHHHHHHH
Confidence 4322 2222222222222110 0 1112222222222332221 1112223456799999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHhhccchhhhHhhHHHHHHHHHHHhhc
Q psy4866 445 LCTTLGLI-SYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFL 488 (537)
Q Consensus 445 ~~~~g~~~-~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 488 (537)
..++|+.+ +|.+.|.+.|..|+...|.+.++++++++++...+.
T Consensus 391 ~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 435 (452)
T PRK11273 391 FGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 435 (452)
T ss_pred HHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 99998765 799999999999999999888888887776665443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=279.30 Aligned_cols=359 Identities=14% Similarity=0.127 Sum_probs=232.6
Q ss_pred hhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy4866 80 MSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLG 159 (537)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~ 159 (537)
+......+.+|.+.+ ++|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++++++++.
T Consensus 50 ~~~~~~~~~~~~l~~---~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~ 126 (476)
T PLN00028 50 VSTFAAAPLLPIIRD---NLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATG 126 (476)
T ss_pred HHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 334456788899999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHh----h---------hhhHHHHHHHHH
Q psy4866 160 LYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLG----S---------ELSYMNYLTYSL 226 (537)
Q Consensus 160 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~----~---------~~~wr~~~~~~~ 226 (537)
+++.|+++|++.+... ....+++|++|+++|++++++.....++|..+++.+. . ..+||+.|++.+
T Consensus 127 l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g 205 (476)
T PLN00028 127 FIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPG 205 (476)
T ss_pred HHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHH
Confidence 9999999999987654 4566889999999999999998766666665554333 2 147999999999
Q ss_pred HHHHHHHHHhhccc-CChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHH
Q psy4866 227 IIPIIFTVTFMFMP-ESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFM 305 (537)
Q Consensus 227 ~~~~~~~~~~~~~~-esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (537)
++.++..+..++++ +.|. ++.++.. ++. ..++.+....+++.++++..+...+.
T Consensus 206 ~l~l~~~l~~~~~~~~~p~-----~~~~~~~-------~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (476)
T PLN00028 206 LLHIIMGILVLTLGQDLPD-----GNYRELK-------KSG-------------TMPKDSFSKVLRYGVTNYRTWILALT 260 (476)
T ss_pred HHHHHHHHHHHHHcCcCCC-----CchhhHH-------hcC-------------ccccccHHHHHHHHHcCchhHHHHHH
Confidence 88877655554443 3331 0000000 000 00000001123334443332222222
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhc-CCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcH-------HHHHhhHHHH
Q psy4866 306 AFLAVFRAFTGVQSIIAYANTIFASS-ETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRV-------LFLVSSAGCS 376 (537)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~-------~~~~~~~~~~ 376 (537)
++..+.....+..+.|.++.+. +.+. .+.....+..++.+++++++|+++||++||+ .......+.+
T Consensus 261 ----~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~ 336 (476)
T PLN00028 261 ----YGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGG 336 (476)
T ss_pred ----HHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHH
Confidence 2222222334556677776553 6552 3456777788999999999999999998652 1112222222
Q ss_pred HHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHH
Q psy4866 377 LFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKL 456 (537)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 456 (537)
+..+++.. ..+.+.....+++++.+..... +..+++..+..| +.+|++.|+.+..+++|+++++.+
T Consensus 337 i~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l 402 (476)
T PLN00028 337 VFCIWLGR------------ANSLGAAIVVMILFSIFVQAAC-GATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLL 402 (476)
T ss_pred HHHHHhcc------------cchHHHHHHHHHHHHHHHHHhh-hhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHH
Confidence 21121111 1122222333333444333322 234456666654 679999999988888888888876
Q ss_pred HHHHHHhhccchhhhHhhHHHHHHHHHHHh
Q psy4866 457 FFLMDKHIGMYSNFLFGGVSSLVCTVYLYY 486 (537)
Q Consensus 457 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 486 (537)
.+ ..+..+|...|.+.+++.+++.++.++
T Consensus 403 ~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 403 FF-TGSSYSTETGISLMGVMIIACTLPVAF 431 (476)
T ss_pred HH-hcCCccHhhHHHHHHHHHHHHHHHHHh
Confidence 54 222335777888888777777665533
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=278.36 Aligned_cols=415 Identities=16% Similarity=0.152 Sum_probs=293.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHH
Q psy4866 63 LFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGP 142 (537)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~ 142 (537)
.++......+.............++..+ .+ .+..+.....+..+++.+|..+|++++|+++||+|||++++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~---~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~ 156 (521)
T KOG0255|consen 82 KKWLLVIVICLDGWVYDYGSSVYSIVSE--WN---LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLL 156 (521)
T ss_pred cccccccccccceeEecCCCCcccccch--hc---eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHH
Confidence 3333333333333333334444444433 23 677788889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh-h-hHHH
Q psy4866 143 ITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE-L-SYMN 220 (537)
Q Consensus 143 l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~-~-~wr~ 220 (537)
+.+++.+++++++|++.+++.|+++|++.++.......++.|++++++|+.+..+ ......|+.+++.++.+ . +||+
T Consensus 157 ~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~ 235 (521)
T KOG0255|consen 157 LFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRW 235 (521)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999 55555555555555544 3 7999
Q ss_pred HHHHHHHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCC--hhhHHHHHHH---HH-HhhhhcccccchHHhh
Q psy4866 221 YLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKT--ADQVQSELQI---IK-QNTSKNVERTNFREFM 294 (537)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~ 294 (537)
.+++..++.++.++.+++.||||||+..+++.+++.+.+++..+.+ ..+.....+. .+ ......+.+..+.+++
T Consensus 236 ~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 315 (521)
T KOG0255|consen 236 LFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLF 315 (521)
T ss_pred HHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhh
Confidence 9999999998887777777899999999999999999998876533 1111111111 11 1111112235678888
Q ss_pred ccc-hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhH
Q psy4866 295 GRS-NMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSA 373 (537)
Q Consensus 295 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 373 (537)
+.+ .++.++...+.++. ....+| ...+...+.+.+......+.+.....+....+...|+.|||.....+..
T Consensus 316 ~~~~l~~~~~~~~~~~~~------~~~~y~-gl~~~~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~ 388 (521)
T KOG0255|consen 316 RTPRLRYRTLYLLFIWFV------FSLVYY-GLSLNVSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLF 388 (521)
T ss_pred cCHHHHHHHHHHHHHHHH------HhHHHH-hhhhhhhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHH
Confidence 754 44444444443321 111111 2222222233344555556666777888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHH
Q psy4866 374 GCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLIS 453 (537)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 453 (537)
+..++++..++..... ..+...+...+..++.+.++... +.+..|++|+..|+.+.+.......++++++
T Consensus 389 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~a 458 (521)
T KOG0255|consen 389 LAGIGLLLFGWLPDDL---------GGWLHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILA 458 (521)
T ss_pred HHHHHHHHHHHhhccc---------hhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888887753111 11233444444444445555444 6999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccchhhhHhhHHHHHHHHHHHhhccCCCCCCHHHHHH
Q psy4866 454 YKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFLLETKGKTFNEIQY 501 (537)
Q Consensus 454 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (537)
|.+...... ......+.+++....+..++...++||++++.+.+...
T Consensus 459 p~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~ 505 (521)
T KOG0255|consen 459 PLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLL 505 (521)
T ss_pred HHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHH
Confidence 987654433 22222333356667777777778899999888755433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=276.07 Aligned_cols=381 Identities=14% Similarity=0.075 Sum_probs=273.8
Q ss_pred HHHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHH
Q psy4866 63 LFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGP 142 (537)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~ 142 (537)
++|.++..++++.|+..++.+..+..+|.+.+ ++|.+.++.+|+.++|.++..++.+++|+++||+|||++++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~---~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~ 79 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSM---TLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGT 79 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 45678888999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccC-CCcccchhhhHhHHHHHHHHHHHHHHhhhh----h
Q psy4866 143 ITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEIS-ETSIRGTIGTLFQISCHLGILYTYVLGSEL----S 217 (537)
Q Consensus 143 l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~----~ 217 (537)
++.++++++++++|++.++++|+++|+|.+...+.....+.+++ |+++|+++++++.....+|..+||.+++.+ +
T Consensus 80 ~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g 159 (495)
T PRK14995 80 LFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY 159 (495)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999888888887766 678999999999999999999999988764 8
Q ss_pred HHHHHHHHHHHHHHHH-HHhhcccCChHHHHHhCCHHHHHH------------HHHhhcCCChhhHHHHH----------
Q psy4866 218 YMNYLTYSLIIPIIFT-VTFMFMPESPYFYAIKNQEGKAIE------------SLKWLRNKTADQVQSEL---------- 274 (537)
Q Consensus 218 wr~~~~~~~~~~~~~~-~~~~~~~esp~~l~~~~~~~~a~~------------~~~~~~~~~~~~~~~~~---------- 274 (537)
||+.|++...++++.. +..+++||+|.. ++.+.+.... .++...+..........
T Consensus 160 wr~~f~i~~~~~~~~~~l~~~~l~~~~~~--~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 237 (495)
T PRK14995 160 WGSVFLINVPIVLVVMGLTARYVPRQAGR--RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLG 237 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Confidence 9999999887776644 445567776521 0111111000 00000000000000000
Q ss_pred HHHHHhhhhcccccchHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCC-CChhHHHHHHHHHHHHHh
Q psy4866 275 QIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETF-LPSDYISILFAIILLVSI 352 (537)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~ 352 (537)
.....+.. .++..-..++++++......+.. +...........+.|.+++.. +.+ .+++.......++..++.
T Consensus 238 ~f~~~e~~-~~~p~~~~~lf~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~ 312 (495)
T PRK14995 238 LFIRTQLA-ASRPMIDMRLFTHRIILSGVVMA----MTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSG 312 (495)
T ss_pred HHHHHHhc-CCCCCcCHHHhCCcccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 00000000 11111113455544433222222 222223445566788888764 544 245577777889999999
Q ss_pred hhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCc
Q psy4866 353 FPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSS 432 (537)
Q Consensus 353 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 432 (537)
++.|++.||+++|+.+..+.++..++.+++.... .....+......++.+.+.+....+. .....+..|+
T Consensus 313 ~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~---------~~~~~~~~~~~~~l~G~g~g~~~~~~-~~~~~~~~~~ 382 (495)
T PRK14995 313 PIAGILVSRLGLRLVATGGMALSALSFYGLAMTD---------FSTQQWQAWGLMALLGFSAASALLAS-TSAIMAAAPP 382 (495)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhc---------CCCchHHHHHHHHHHHHhHHHHHHHH-HHHHHhcCCH
Confidence 9999999999999988888777766665544321 01223334445566666666554443 4667778899
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4866 433 NMKAVSCAVINILCTTLGLISYKLFFLMDKH 463 (537)
Q Consensus 433 ~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 463 (537)
++++.+.++.++..++|+.+|+.+.|.+.+.
T Consensus 383 ~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 383 EKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988764
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=261.84 Aligned_cols=359 Identities=13% Similarity=0.050 Sum_probs=253.3
Q ss_pred hhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH-----h
Q psy4866 81 SFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS-----R 155 (537)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~-----~ 155 (537)
.....+++.+.+.++ ++++|.+|.+++.+++.+++.++.++.|++.||+|.|+++.++.++.++.+++++++ +
T Consensus 49 ~w~~~~~l~~~~~~~--~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~ 126 (462)
T PRK15034 49 VWMLFSAVTVNLNKI--GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNT 126 (462)
T ss_pred HHHHHHHHHHHhhhh--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence 344566666676543 799999999999999999999999999999999999999999999999999999987 8
Q ss_pred hHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhh---------------------
Q psy4866 156 SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGS--------------------- 214 (537)
Q Consensus 156 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~--------------------- 214 (537)
|++.+++.|++.|++ +..++.....+++|+|+++||+++++.....++|..+++++..
T Consensus 127 s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g 205 (462)
T PRK15034 127 PFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADG 205 (462)
T ss_pred CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 999999999999998 7788999999999999999999999997666666654433321
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHhhc-ccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHH
Q psy4866 215 -ELSYMNYLTYSLIIPIIFTVTFMF-MPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE 292 (537)
Q Consensus 215 -~~~wr~~~~~~~~~~~~~~~~~~~-~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (537)
..+||...++..++.++..+..++ .++.|. .+.......+
T Consensus 206 ~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~--------------------------------------~~~~~~~~~~ 247 (462)
T PRK15034 206 SVMSLANAAWIWVPLLAIATIAAWSGMNDIAS--------------------------------------SRASIADQLP 247 (462)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhCCCccc--------------------------------------cccCHHHHHH
Confidence 224788777777777665544443 333220 0000122334
Q ss_pred hhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhh
Q psy4866 293 FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSS 372 (537)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 372 (537)
.+|++.. +...+.+++.+.++..+..++|.+.++.-..........+..+...+.++++|+++||+|+++++.++.
T Consensus 248 vlk~~~~----Wllslly~~tFG~fvg~s~~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~ 323 (462)
T PRK15034 248 VLQRLHL----WLLSLLYLATFGSFIGFSAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINF 323 (462)
T ss_pred HhCCCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHH
Confidence 5555543 334444455556677778888888766321112223344456788899999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCc--------------------
Q psy4866 373 AGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSS-------------------- 432 (537)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------------- 432 (537)
+++.++...+..... .. ...+.+......+.+..+.+.+..+ .+-++.+.+|+
T Consensus 324 i~~~i~~~~~~l~lp-~~-----~~~~~~~~~~~~~~l~~~~G~gngs-vfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~ 396 (462)
T PRK15034 324 IFMAIFSALLFLTLP-GT-----GSGNFIAFYAVFMGLFLTAGLGSGS-TFQMIAVIFRQITIYRVKMKGGSDEQAQREA 396 (462)
T ss_pred HHHHHHHHHHHHHhc-cc-----cccHHHHHHHHHHHHHHHhcccchH-HHHhhHHHHhhhhhhcccccccchhHHhhHH
Confidence 877766544333221 00 0011222222232233344444333 34677777774
Q ss_pred -cccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhhhHhhHHHHHHHHHHHhhccCC
Q psy4866 433 -NMKAVSCAVINILCTTLGLISYKLFFLMDKHIGM-YSNFLFGGVSSLVCTVYLYYFLLET 491 (537)
Q Consensus 433 -~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (537)
++.|.+.|+....+.+|+++.|.++|...+..|. ...++.+.+..++|.++.+.++.++
T Consensus 397 ~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r~ 457 (462)
T PRK15034 397 VTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGRR 457 (462)
T ss_pred HHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1467899999999999999999999999888764 4567888888888888887766443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=273.11 Aligned_cols=361 Identities=14% Similarity=0.066 Sum_probs=259.2
Q ss_pred HHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHH
Q psy4866 71 ACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWII 150 (537)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~ 150 (537)
..+..+..+. ....++..|.+.+ ++|+|..+.|++.+++.++..++++++|+++||+|||+++.++.++.+++.++
T Consensus 9 ~~~~~~~~~~-~~~~~~~~~~~~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~ 84 (377)
T TIGR00890 9 TVIMCFTSGY-VYTWTLLAPPLGR---YFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTF 84 (377)
T ss_pred HHHHHHHhhH-HhhhhhHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHH
Confidence 3333444444 3346788999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHH
Q psy4866 151 AMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSL 226 (537)
Q Consensus 151 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~ 226 (537)
+++++|++.++++|++.|++.+..++.....+.+++| ++|+++.++...+.++|.++++.+... .+||+.|++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~ 163 (377)
T TIGR00890 85 YAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMG 163 (377)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHH
Confidence 9999999999999999999999988888888999997 579999999999999998765544433 37999999999
Q ss_pred HHHHHHHHHh-hcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHH
Q psy4866 227 IIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFM 305 (537)
Q Consensus 227 ~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (537)
++.++..+.. ++++|.|+. +.+ +++ + ....+...++.++++..+.....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~---~~~------------~~~--~-------------~~~~~~~~~~~~~~~~~~~~~~~ 213 (377)
T TIGR00890 164 IIFLLVIVLGAFLIGYPPGQ---LIK------------TNI--E-------------VSVKDYTVWEMLRTPQFWVLYLS 213 (377)
T ss_pred HHHHHHHHHHHHheecCchh---ccc------------cCc--c-------------cchhhhhHHHHHcCccHHHHHHH
Confidence 8877755444 445544310 000 000 0 00001123344544443333322
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHH
Q psy4866 306 AFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGL 384 (537)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 384 (537)
..+..+ .......+.+.+.++.+.+. .......+..++.++++++.|++.||++||+.+..+.++..++.+.+..
T Consensus 214 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 289 (377)
T TIGR00890 214 FFLNAV----SGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLF 289 (377)
T ss_pred HHHHhH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 222221 12233344455556655542 2345667788899999999999999999999988887777776665543
Q ss_pred HHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4866 385 YYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHI 464 (537)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 464 (537)
.. ............+.+.+.+.. .+....+..|.+|+++|+++.|+.+....+|..++|.+.|.+.+..
T Consensus 290 ~~----------~~~~~~~~~~~~~~g~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 358 (377)
T TIGR00890 290 IP----------MLNDVLFLATVALVFFTWGGT-ISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI 358 (377)
T ss_pred cc----------cchhHHHHHHHHHHHHHhccc-hhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 21 011112222233344443332 2344478889999999999999999999999999999999999999
Q ss_pred ccchhhhHhhHHHHHHH
Q psy4866 465 GMYSNFLFGGVSSLVCT 481 (537)
Q Consensus 465 g~~~~~~~~~~~~~~~~ 481 (537)
|+...|.+.+++.+++.
T Consensus 359 g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 359 GFEYTFIVTGAFALTSL 375 (377)
T ss_pred chhhHHHHHHHHHHHhc
Confidence 99988887776666543
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=268.75 Aligned_cols=356 Identities=17% Similarity=0.137 Sum_probs=257.2
Q ss_pred HHHhhhhhhhhhccchhhHHh-hhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHH
Q psy4866 71 ACIAAFTTGMSFAWSAPVLEE-LLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWI 149 (537)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~ 149 (537)
..+..+...++.++..+.+|. +.+ ++|.|..+.|++.+++.+++.+++++.|+++||+|||++++++.++.+++.+
T Consensus 20 l~~~~~~~~~~~~~~~~~l~~~i~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~ 96 (399)
T PRK05122 20 IVMFTFISYLTIGLPLAVLPGYVHD---QLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGL 96 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHH
Confidence 444555666677778888887 456 8999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHh--------hHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hh
Q psy4866 150 IAMYSR--------SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LS 217 (537)
Q Consensus 150 ~~~~~~--------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~ 217 (537)
++.++. +++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|.++++.+++. ++
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g 176 (399)
T PRK05122 97 LYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGG 176 (399)
T ss_pred HHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHccc
Confidence 665532 577899999999999999999999999999999999999999988888888888777654 58
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccc
Q psy4866 218 YMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRS 297 (537)
Q Consensus 218 wr~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (537)
||+.+++.++.+++..+.....|+++. . +.+ +.++++.+++.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-------------~~~--------------------~~~~~~~~~~~ 218 (399)
T PRK05122 177 LAGLGLLIMLLALLGLLLARPRPAVPP-----V-------------KGE--------------------RLPFRRVLGRV 218 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCC-----C-------------Ccc--------------------chhHHHHHHHH
Confidence 999888777665544433333333210 0 000 00111222111
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHH
Q psy4866 298 NMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSL 377 (537)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 377 (537)
. .......+.. ..+.....+.+.++.+.+.. ..........++.+++.++.+++.||+++|+.+..+..+..+
T Consensus 219 ~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~ 291 (399)
T PRK05122 219 W--PYGMGLALAS----IGFGTIATFITLYYAARGWD-GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEIL 291 (399)
T ss_pred H--HHHHHHHHHH----HHHHHHHHHHHHHHHHcccc-cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 1111111111 12334455667666665543 444555667788889999999999999999988887777776
Q ss_pred HHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHH
Q psy4866 378 FSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLF 457 (537)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 457 (537)
+.+++... ++.+..++..++.+.+.+... +.......|..|++.|+++.|+.+....+|..+++.+.
T Consensus 292 ~~~~~~~~------------~~~~~~~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 358 (399)
T PRK05122 292 GLLLLWLA------------PSPWMALIGAALTGFGFSLVF-PALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLA 358 (399)
T ss_pred HHHHHHHh------------ccHHHHHHHHHHHHHhHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555442 223334444455555555433 33335667888999999999999999999999999999
Q ss_pred HHHHHhhccchhhhHhhHHHHHHHHHHHhh
Q psy4866 458 FLMDKHIGMYSNFLFGGVSSLVCTVYLYYF 487 (537)
Q Consensus 458 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 487 (537)
|.+.+..|++..+.+.+++++++.++.+.+
T Consensus 359 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 359 GLVASWFGYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999988888888777776655443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=260.96 Aligned_cols=359 Identities=11% Similarity=0.133 Sum_probs=253.1
Q ss_pred HHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHH
Q psy4866 67 LCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTA 146 (537)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~ 146 (537)
.++.+.+..+..........+.+|.+.+ ++|.++++.++..+++.++..+++++.|+++||+|||++++.+.++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~ 97 (394)
T PRK10213 21 AVFSVAFCVACLIIVEFLPVSLLTPMAQ---DLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL 97 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence 3333444444444444455667889999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHH
Q psy4866 147 SWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYL 222 (537)
Q Consensus 147 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~ 222 (537)
+.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|.+++. ++||+.|
T Consensus 98 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f 177 (394)
T PRK10213 98 SCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVF 177 (394)
T ss_pred HHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998888865 4899999
Q ss_pred HHHHHHHHHHHHHh-hcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHH
Q psy4866 223 TYSLIIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKA 301 (537)
Q Consensus 223 ~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (537)
++.++++++..+.. ...||+|+. + + +.....++.++++..+.
T Consensus 178 ~~~~~l~~~~~l~~~~~~p~~~~~-----~--------------~------------------~~~~~~~~~l~~~~~~~ 220 (394)
T PRK10213 178 NAAAVMGVLCIFWIIKSLPSLPGE-----P--------------S------------------HQKQNTFRLLQRPGVMA 220 (394)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCcc-----c--------------c------------------cchhHHHHHhcCHHHHH
Confidence 99887766544333 345665310 0 0 00111233444443333
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHH-HHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHH
Q psy4866 302 FVFMAFLAVFRAFTGVQSIIAYA-NTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFS 379 (537)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 379 (537)
..+...+... +......+. |.+.++.|.+. ..+......+++.+++.++.+++.||.+ |+.+..+..+..+..
T Consensus 221 ~~~~~~~~~~----~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~ 295 (394)
T PRK10213 221 GMIAIFMSFA----GQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSA 295 (394)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHH
Confidence 3222222222 223333444 66666666653 3446677788889999999999999964 444333333333332
Q ss_pred HHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q psy4866 380 FIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFL 459 (537)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 459 (537)
+.+... ....+......++.+.+++... +...+++.+..| +.+++..+......++|..+|+.+.|.
T Consensus 296 ~~l~~~-----------~~~~~~~~~~~~l~G~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~ 362 (394)
T PRK10213 296 LVLTLW-----------GSDKIVATGVAIIWGLTFALVP-VGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGY 362 (394)
T ss_pred HHHHHH-----------hhhHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221 1233444445555665554433 334456777777 446778888888889999999999999
Q ss_pred HHHhhccchhhhHhhHHHHHHHHH
Q psy4866 460 MDKHIGMYSNFLFGGVSSLVCTVY 483 (537)
Q Consensus 460 l~~~~g~~~~~~~~~~~~~~~~~~ 483 (537)
+.|..|+...+...+++.++..+.
T Consensus 363 l~~~~g~~~~~~~~~~~~~~~~~~ 386 (394)
T PRK10213 363 ALDNIGLTSPLMLSGTLMLLTALL 386 (394)
T ss_pred HHhccChhhHHHHHHHHHHHHHHH
Confidence 999988887776665555444433
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=271.02 Aligned_cols=383 Identities=17% Similarity=0.186 Sum_probs=264.6
Q ss_pred hhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q psy4866 77 TTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRS 156 (537)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~ 156 (537)
...++....+...|.+.+ ++|.+..+.+++.+++.++..++.++.|+++||+|||+++.++.++.+++.+++++++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~ 81 (399)
T TIGR00893 5 INYLDRANLSFAAPMLQE---DLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGA 81 (399)
T ss_pred HHHHHHHhhhHhHHHHHH---hhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcC
Confidence 344566677788888998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHH
Q psy4866 157 VLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIF 232 (537)
Q Consensus 157 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~~~~~ 232 (537)
++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|.++++.+++. .+||+.|++.+++.++.
T Consensus 82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (399)
T TIGR00893 82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIW 161 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888765 48999999988887665
Q ss_pred HHH-hhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHHHHHH
Q psy4866 233 TVT-FMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVF 311 (537)
Q Consensus 233 ~~~-~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (537)
.+. .++.||+|+... ..+.++.....+... .+.++..+.+..+...++.++++..+.. .+..+
T Consensus 162 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 225 (399)
T TIGR00893 162 GVLWLKFIPDPPQKAK-WLTEEEKYIVVGGLL-----------AEQQGKGPSTPKKYQIKELLKDRRVWGL----ALGQF 225 (399)
T ss_pred HHHhhheecCCCCccc-cCCHHHHhhcchhhc-----------cccccccccCCCccchHHHhcCHHHHHH----HHHHH
Confidence 544 445666652100 000000000000000 0000001111113344555554433222 22223
Q ss_pred HHhhhHHHHHHHHHHHHHhc-CCC-CChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHH-hhHHHHHHHHHHHHHHHh
Q psy4866 312 RAFTGVQSIIAYANTIFASS-ETF-LPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLV-SSAGCSLFSFIAGLYYYV 388 (537)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 388 (537)
...........+.|.++++. +.+ ...+.......++.+++.++.+++.||++||+.... ......++.+........
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (399)
T TIGR00893 226 LVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFA 305 (399)
T ss_pred HHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Confidence 33334556677778877654 443 234466777788899999999999999999862111 111111111111111000
Q ss_pred hhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc-cc
Q psy4866 389 TIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG-MY 467 (537)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~ 467 (537)
.. ........+....++.+ ..+..+..+++..|.+|++.|+++.|+.+.+.++|..++|.+.|.+.+..| +.
T Consensus 306 ~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~ 378 (399)
T TIGR00893 306 TN------YVNIPYAALALVALGFF-GLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFA 378 (399)
T ss_pred hc------cchhHHHHHHHHHHHHh-chhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchh
Confidence 00 01112222222222222 222456677899999999999999999999999999999999999999988 88
Q ss_pred hhhhHhhHHHHHHHHHHH
Q psy4866 468 SNFLFGGVSSLVCTVYLY 485 (537)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~ 485 (537)
..+.+.+++.+++.+..+
T Consensus 379 ~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 379 GALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 788777777777665543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=262.30 Aligned_cols=352 Identities=17% Similarity=0.116 Sum_probs=251.1
Q ss_pred hhhhhhhhccchhhHHh-hhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy4866 75 AFTTGMSFAWSAPVLEE-LLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMY 153 (537)
Q Consensus 75 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~ 153 (537)
.++.....+...|.+|. +.+ ++|.|..++|++.+++.++..++++++|+++||+|||++++.+.++..++.+....
T Consensus 24 ~~~~~~~~~~~~p~l~~~l~~---~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~ 100 (392)
T PRK12382 24 VFLTYMTVGLPLPVIPLFVHH---DLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLL 100 (392)
T ss_pred HHHHHHHHHHHhhhhhHHHHH---hcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHh
Confidence 33444456677888886 456 89999999999999999999999999999999999999999998887776543322
Q ss_pred --------HhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHH
Q psy4866 154 --------SRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNY 221 (537)
Q Consensus 154 --------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~ 221 (537)
.++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++. ++||+.
T Consensus 101 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~ 180 (392)
T PRK12382 101 AAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAAL 180 (392)
T ss_pred hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHH
Confidence 35889999999999999999999899999999999999999999999998898888888755 489887
Q ss_pred HHHHHHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHH
Q psy4866 222 LTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKA 301 (537)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (537)
+.+..+..++........||.+. ++ +.+.+.++..+. .+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~------------------~~~~~~~~~~~~-~~~~ 221 (392)
T PRK12382 181 ALTTMVLPLLAWAFNGTVRKVPA--------------------HA------------------GERPSLWSVVGL-IWKP 221 (392)
T ss_pred HHHHHHHHHHHHHHHHhccCCCC--------------------Cc------------------ccCchHHHHHHH-HHHh
Confidence 77655544433322222333210 00 000011111110 0111
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHH
Q psy4866 302 FVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFI 381 (537)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 381 (537)
... ..+. ..+......+.+.++++.+.+ ..........++.+++.++.|++.||+++|+.+..+..+..++.++
T Consensus 222 ~~~-~~l~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~ 295 (392)
T PRK12382 222 GLG-LALQ----GVGFAVIGTFVSLYFASKGWA-MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLL 295 (392)
T ss_pred HHH-HHHH----HHHHhHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHH
Confidence 111 1111 112334556667777766553 3445555667778889999999999999999988887777776655
Q ss_pred HHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4866 382 AGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMD 461 (537)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 461 (537)
+... .+.+...+...+.+.+.+... +.......|.+|+++||++.|+.+....+|..++|.+.|.+.
T Consensus 296 ~~~~------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~ 362 (392)
T PRK12382 296 LWLA------------PTAWVALAGAALTGAGCSLIF-PALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLA 362 (392)
T ss_pred HHHc------------ccHHHHHHHHHHHHHHHHhHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4431 223333444445555544433 334467788899999999999999999999999999999999
Q ss_pred HhhccchhhhHhhHHHHHHHHHHHhh
Q psy4866 462 KHIGMYSNFLFGGVSSLVCTVYLYYF 487 (537)
Q Consensus 462 ~~~g~~~~~~~~~~~~~~~~~~~~~~ 487 (537)
++.||...|.+.+++.+++.++.+..
T Consensus 363 ~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 363 TSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999988888877777665444
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=261.04 Aligned_cols=362 Identities=14% Similarity=0.088 Sum_probs=254.7
Q ss_pred HHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHH
Q psy4866 69 VTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASW 148 (537)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~ 148 (537)
...+++.+..++......+.+|.+.+ ++|.+..+.|++.+.+.++..++++++|+++||+|||+++.++.++.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 82 (382)
T PRK10091 6 LSLALGTFGLGMAEFGIMGVLTELAH---DVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN 82 (382)
T ss_pred HHHHHHHHHHHhhHHHHHhChHHHHH---HcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence 34555667777787788899999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHH
Q psy4866 149 IIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTY 224 (537)
Q Consensus 149 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~ 224 (537)
+++++++|++.+++.|+++|++.+...+....++.|++++++|++++++...+..+|..+++.+++. .+||+.|++
T Consensus 83 ~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~ 162 (382)
T PRK10091 83 AMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL 162 (382)
T ss_pred HHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence 9999999999999999999999999888888999999999999999999999999999888877654 489999999
Q ss_pred HHHHHHHHHH-HhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHH
Q psy4866 225 SLIIPIIFTV-TFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFV 303 (537)
Q Consensus 225 ~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (537)
.++..++..+ ..+++||.++ +. + .+. +.. .+.++++..+...
T Consensus 163 ~~~~~~~~~~~~~~~lp~~~~----~~---------------~-~~~----------------~~~-~~~~~~~~~~~~~ 205 (382)
T PRK10091 163 IAVFNIAVLASIYFWVPDIRD----EA---------------K-GGL----------------REQ-FHFLRSPAPWLIF 205 (382)
T ss_pred HHHHHHHHHHHHHHhCCCCCc----cc---------------c-cCH----------------HHH-HHHhcChHHHHHH
Confidence 8887765443 3455777531 00 0 000 000 1122222222211
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHH
Q psy4866 304 FMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFI 381 (537)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 381 (537)
.. .+....+......|.+.++.+ .+.+. ..+....+..++.+++.++.+++.||+++|+.+..+..+.+++.++
T Consensus 206 ~~----~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~ 281 (382)
T PRK10091 206 AA----TMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLM 281 (382)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHH
Confidence 11 111112222333455555544 45543 3446677788899999999999999999999988887776666554
Q ss_pred HHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4866 382 AGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMD 461 (537)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 461 (537)
+.... +..+...+..++.+.+......+.......+..|.+.++.+ ..+...++|.+++|.+.|.+.
T Consensus 282 ~~~~~-----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~ 348 (382)
T PRK10091 282 LFFFG-----------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMML 348 (382)
T ss_pred HHHHH-----------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHH
Confidence 43321 12223333333333333222223322334444454444443 446778999999999999999
Q ss_pred Hh-hccchhhhHhhHHHHHHHHHHHhh
Q psy4866 462 KH-IGMYSNFLFGGVSSLVCTVYLYYF 487 (537)
Q Consensus 462 ~~-~g~~~~~~~~~~~~~~~~~~~~~~ 487 (537)
|. .++...+.+.++++.+.......+
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 349 TLGLAYNYVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred HcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 96 578777777766666555544333
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=262.23 Aligned_cols=364 Identities=12% Similarity=0.071 Sum_probs=263.8
Q ss_pred HHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHH
Q psy4866 67 LCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTA 146 (537)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~ 146 (537)
+....+++.+..+......++.+|.+.+ ++|+|.++.+++.+.+.+++.++.+++|++.||+|||+++..+.++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~---~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i 84 (394)
T PRK03699 8 LTWISFLSYALTGALVIVTGMVMGPIAE---YFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMIL 84 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4445566777888888889999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh-----hhHHHH
Q psy4866 147 SWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE-----LSYMNY 221 (537)
Q Consensus 147 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~-----~~wr~~ 221 (537)
+.++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++++.......+|..++|.+.+. .+||+.
T Consensus 85 ~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~ 164 (394)
T PRK03699 85 AVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWV 164 (394)
T ss_pred HHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 999999999999999999999999999999999999999999999999999888888888888776543 489999
Q ss_pred HHHHHHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHH
Q psy4866 222 LTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKA 301 (537)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (537)
|.+.+++.++..+..++ .+.|+. ++. + + + ++ +...++.+ ++
T Consensus 165 f~~~~~~~~~~~~~~~~-~~~p~~--~~~---------------~--~----------~--~~--~~~~~~~~-~~---- 205 (394)
T PRK03699 165 YACIGLVYVAIFILTLF-SEFPAL--GKH---------------A--P----------K--AD--KPVAKEKW-GI---- 205 (394)
T ss_pred HHHHHHHHHHHHHHHHh-cCCccc--ccc---------------C--c----------c--cc--CccccccC-Ch----
Confidence 99888777665443332 222210 000 0 0 0 00 00000011 11
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHH
Q psy4866 302 FVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFS 379 (537)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 379 (537)
.++...+..+........+..|.|.++++. +.+. +.+.......++.++++++.++++||+++|+.+.....+..+..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~ 285 (394)
T PRK03699 206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLM 285 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHH
Confidence 122222222223333556778899998654 6553 34566677788899999999999999999998877666555544
Q ss_pred HHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q psy4866 380 FIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFL 459 (537)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 459 (537)
.++... .+.+...+..++.+.+.+. ..+...++..+..|. .++...+......++|.+++|.+.|+
T Consensus 286 ~~~~~~------------~~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~ 351 (394)
T PRK03699 286 YLFVNT------------DDPSHLLYAILGLGFFSSA-IYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSP 351 (394)
T ss_pred HHHHHc------------CCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333221 1222333334444444333 334444566666654 46778899999999999999999999
Q ss_pred HHHhhccchhhhHhhHHHHHHHHHHHh
Q psy4866 460 MDKHIGMYSNFLFGGVSSLVCTVYLYY 486 (537)
Q Consensus 460 l~~~~g~~~~~~~~~~~~~~~~~~~~~ 486 (537)
+.+..|++..+++.+++++++.+.+..
T Consensus 352 l~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (394)
T PRK03699 352 IVAHFGLQAALLTANGLYAVVFVMCIL 378 (394)
T ss_pred HHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence 999999998888877777777655433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=271.34 Aligned_cols=371 Identities=14% Similarity=0.100 Sum_probs=268.7
Q ss_pred hhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHH---
Q psy4866 77 TTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMY--- 153 (537)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~--- 153 (537)
...+..+...+.+|.+.+ +++.+..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~ 104 (417)
T PRK10489 28 ISIFGLGLLGVAVPVQIQ---MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAF 104 (417)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHH
Confidence 344455667778888888 88889999999999999999999999999999999999999988888777665543
Q ss_pred --HhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHHH
Q psy4866 154 --SRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLI 227 (537)
Q Consensus 154 --~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~ 227 (537)
.++++.+++.|+++|++.+...+...+++.|++|+++|+++.++...+..+|..+|+.+++. .+|++.|++.++
T Consensus 105 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~ 184 (417)
T PRK10489 105 LPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAA 184 (417)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 46788999999999999998889999999999999999999999999999999999888765 479999998887
Q ss_pred HHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHH
Q psy4866 228 IPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAF 307 (537)
Q Consensus 228 ~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (537)
..++..+..+.+||+++.. + +.+ +. .++. +..++..++++..+...+...
T Consensus 185 ~~~~~~~~~~~l~~~~~~~----~------------~~~--~~---~~~~---------~~~~~~~~~~~~~~~~~~~~~ 234 (417)
T PRK10489 185 GTFITLLPLLRLPALPPPP----Q------------PRE--HP---LRSL---------LAGFRFLLASPVVGGIALLGG 234 (417)
T ss_pred HHHHHHHHHHhCCCCCCCC----c------------ccc--cc---hHHH---------HHHHHHHHcChHHHHHHHHHH
Confidence 7777666666777654210 0 000 00 0000 112233444333333222222
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHh-cCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHH
Q psy4866 308 LAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLY 385 (537)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (537)
+..+ ......+.|.+.++ .+.+. ..+.......++.+++.++.+++.||.++++.+..+.++..++.+++...
T Consensus 235 ~~~~-----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 309 (417)
T PRK10489 235 LLTM-----ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM 309 (417)
T ss_pred HHHH-----HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc
Confidence 2111 23445667888777 45542 34466667788899999999999999877777777776666665544331
Q ss_pred HHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4866 386 YYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG 465 (537)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 465 (537)
.+.+...+..++++.+.+. ..+...+++.|..|++.||+++|+.+...++|..++|.+.|.+.+..|
T Consensus 310 ------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g 376 (417)
T PRK10489 310 ------------PMWILAVLCLALFGYLSAI-SSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT 376 (417)
T ss_pred ------------chHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc
Confidence 1223333444444444333 234445788899999999999999999999999999999999999999
Q ss_pred cchhhhHhhHHHHHHHHHHHhhccCCCCCCHHH
Q psy4866 466 MYSNFLFGGVSSLVCTVYLYYFLLETKGKTFNE 498 (537)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (537)
+...+...+++.++..++.+...++.|+++++|
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (417)
T PRK10489 377 PVASASASGFGLLIIGVLLLLVLGELRRFRQTP 409 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 888888887777776666667767766554443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-32 Score=265.89 Aligned_cols=377 Identities=17% Similarity=0.204 Sum_probs=266.1
Q ss_pred HHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHH
Q psy4866 64 FSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPI 143 (537)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l 143 (537)
+|.......+..+..+++.....+..|.+.+ ++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 91 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISA---EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL 91 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 3444555556677777788888888999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHH
Q psy4866 144 TTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYM 219 (537)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr 219 (537)
.+++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++. .+||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~ 171 (398)
T TIGR00895 92 FSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWR 171 (398)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccce
Confidence 999999999999999999999999999999999999999999999999999999999999999999888765 4899
Q ss_pred HHHHHHHHHHHH-HHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccch
Q psy4866 220 NYLTYSLIIPII-FTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSN 298 (537)
Q Consensus 220 ~~~~~~~~~~~~-~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (537)
+.|++.++..++ ..+..+++||+|++..++ +.++..+..++.......+..++.++. ..+.+..+...+.+++++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 248 (398)
T TIGR00895 172 SLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQSALPEQ--KATQGTKRSVFKALFQGKT 248 (398)
T ss_pred eehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhcccccccccccc--ccccchhhHHHHHHhcchh
Confidence 999988755544 445566789998776554 333333333322211100000000000 0000000111222333222
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHH
Q psy4866 299 MKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSL 377 (537)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 377 (537)
.+.... ..+..+...........+.|.+.++.+.+. .......+..++.+++.++.+++.||+++|+... ...+..+
T Consensus 249 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~ 326 (398)
T TIGR00895 249 ARITVL-LWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGAV 326 (398)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHH
Confidence 222222 222222333345566777787777666653 3446677788899999999999999999984443 3333333
Q ss_pred HHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHH
Q psy4866 378 FSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLF 457 (537)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 457 (537)
...++.... .+.+......++.+.+.+... +...++..|.+|++.|+++.|+.+.+..+|.+++|.+.
T Consensus 327 ~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~ 394 (398)
T TIGR00895 327 FAVLVGSTL-----------FSPTLLLLLGAIAGFFVNGGQ-SGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILA 394 (398)
T ss_pred HHHHHHHHh-----------hCHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 333322210 123334445555555555443 45568999999999999999999999999999999998
Q ss_pred HHH
Q psy4866 458 FLM 460 (537)
Q Consensus 458 g~l 460 (537)
|++
T Consensus 395 G~l 397 (398)
T TIGR00895 395 GYL 397 (398)
T ss_pred Hhc
Confidence 875
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-31 Score=259.36 Aligned_cols=376 Identities=15% Similarity=0.065 Sum_probs=265.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHH
Q psy4866 61 LFLFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMT 140 (537)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~ 140 (537)
..+.++..+.+.+..+...++.+.+.|.+|.+.+ ++|.|..+.++..+.+.+++.++.++.|+++||+|||++++++
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~ 84 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVE---DFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAG 84 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 3566777788888888888888889999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----h
Q psy4866 141 GPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----L 216 (537)
Q Consensus 141 ~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~ 216 (537)
.++.+++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|.++.++......+|..++|.+++. .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~ 164 (406)
T PRK15402 85 VAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL 164 (406)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999998888999999999999999999998888888888888877654 4
Q ss_pred hHHHHHHHHHHHHHHHHH-HhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhc
Q psy4866 217 SYMNYLTYSLIIPIIFTV-TFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMG 295 (537)
Q Consensus 217 ~wr~~~~~~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (537)
+||+.|++.++..++..+ ..+..||+++.. + +.. . .++ ....++++++
T Consensus 165 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------------~~~--~----~~~---------~~~~~~~~~~ 213 (406)
T PRK15402 165 PWRGMFVLFAALAALSFFGLWRAMPETAGRV---G-------------EKL--S----LKE---------LGRDYKLVLK 213 (406)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhCCCCCccc---c-------------ccc--c----HHH---------HHHHHHHHHc
Confidence 899999998888766544 334567764210 0 000 0 000 0122344555
Q ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhH
Q psy4866 296 RSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSA 373 (537)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 373 (537)
++..+...+...+... .......+.|.++.+ .+.+. ..+.......++.+++.++.+++.||+++|+.+..+.+
T Consensus 214 ~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~ 289 (406)
T PRK15402 214 NRRFVAGALALGLVSL----PLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLW 289 (406)
T ss_pred CcHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4443332222222211 122334455666544 34432 22344445566788899999999999999999888877
Q ss_pred HHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHH
Q psy4866 374 GCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLIS 453 (537)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 453 (537)
+..++.+++....... ....+...+...+++.+.+....+ ....... .+++++|+..++.+....++..++
T Consensus 290 ~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~~~g~g~~~~~~~-~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g 360 (406)
T PRK15402 290 PMVAGLLLAALATVIS-------SHAYLWLTAGLSLYAFGIGLANAG-LYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVG 360 (406)
T ss_pred HHHHHHHHHHHHHHcc-------cccHHHHHHHHHHHHHHHHHHhhh-HHHHHhh-hccccccHHHHHHHHHHHHHHHHH
Confidence 7766666555432111 112233344455555555443322 2233333 344789999999999999999999
Q ss_pred HHHHHHHHHhhccchhhhHhhHHHHHHHHH
Q psy4866 454 YKLFFLMDKHIGMYSNFLFGGVSSLVCTVY 483 (537)
Q Consensus 454 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 483 (537)
+.+.+.+.+..+........++..++..++
T Consensus 361 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 390 (406)
T PRK15402 361 IELSKHAYLGGGNGLFNLFNLANGLLWLLL 390 (406)
T ss_pred HHHHHhcccCCchHHHHHHHHHHHHHHHHH
Confidence 999999988877664433433333333333
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=264.44 Aligned_cols=397 Identities=13% Similarity=0.109 Sum_probs=260.0
Q ss_pred HHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHH
Q psy4866 65 SFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPIT 144 (537)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~ 144 (537)
+.......+..+.............|.+.+ +|+++++.+++.+++.++..++.++.|+++||+|||+++.++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~ 101 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFALAMPYLVE----QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILS 101 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhhhHHHHH----cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHH
Confidence 334444444555555555555666777765 4999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH----hhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh-----
Q psy4866 145 TASWIIAMYS----RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----- 215 (537)
Q Consensus 145 ~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----- 215 (537)
+++.+++++. ++++.+.+.|++.|++.+..++.....+.|++|+++|++++++.+.+..+|..+++.+...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 181 (438)
T TIGR00712 102 AAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF 181 (438)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh
Confidence 9998887764 4677888999999999999989889999999999999999999999999999888765432
Q ss_pred hhHHHHHHHHHHHHHHHH-HHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcc-cccc-hHH
Q psy4866 216 LSYMNYLTYSLIIPIIFT-VTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNV-ERTN-FRE 292 (537)
Q Consensus 216 ~~wr~~~~~~~~~~~~~~-~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~ 292 (537)
.+||+.|++.++++++.. +.++++||+|+....+. .+. .+++..++. .++.+.+. .+.. .+.
T Consensus 182 ~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 246 (438)
T TIGR00712 182 NDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPP--IEE------YRNDYPDDY-------NEKAEQELTAKEIFMQY 246 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCC--chh------ccccccccc-------ccccccccchHHHHHHH
Confidence 489999999888876644 55566788874311000 000 000000000 00000000 0111 112
Q ss_pred hhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHH
Q psy4866 293 FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLV 370 (537)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 370 (537)
+++++..+...+... ..+...+.+..|.|.++++. +.+. .++....+..+..+++.+++|++.||+++++....
T Consensus 247 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~ 322 (438)
T TIGR00712 247 VLPNKLLWYIAIANV----FVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGAT 322 (438)
T ss_pred HccCchHHHHHHHHH----HHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHH
Confidence 344443333322222 22233456677889988764 5442 34566777888899999999999999965432222
Q ss_pred hhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHH
Q psy4866 371 SSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLG 450 (537)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 450 (537)
+.....+..+......... ..+.+......+.++.+. .+..........|.+|++.|+++.|+.+...++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg 394 (438)
T TIGR00712 323 GVFFMTLVTIAVIVYWMNP-------AGNPLVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG 394 (438)
T ss_pred HHHHHHHHHHHHHHHHhcC-------CCchHHHHHHHHHHHHHH-ccHHHHHHHHHHHhcChhheeeehhhhchHHHhhh
Confidence 3222222111111111000 011222222222222221 11111112456789999999999999999988875
Q ss_pred -HHHHHHHHHHHHhhccchhhhHhhHHHHHHHHHHHhhccCCC
Q psy4866 451 -LISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFLLETK 492 (537)
Q Consensus 451 -~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (537)
+++|.+.|.+.|+.|+...+.+..++.+++.+..+.+.+|.|
T Consensus 395 ~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 395 SVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred hhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 689999999999999988888888888888777767766654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=270.10 Aligned_cols=369 Identities=15% Similarity=0.141 Sum_probs=246.6
Q ss_pred ccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy4866 83 AWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYV 162 (537)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~ 162 (537)
...+..+|.+.+ ++|.|.++.+++.+.+.++..++.+++|+++||+|||++++.+.++..+++++++++++++.+++
T Consensus 36 ~~~~~~~~~i~~---~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 112 (455)
T TIGR00892 36 KAVTVFFKELQQ---IFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYL 112 (455)
T ss_pred cchhhhHHHHHH---HhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHH
Confidence 446677899999 99999999999999999999999999999999999999999999999999999999999998875
Q ss_pred -HHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhh
Q psy4866 163 -MRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFM 237 (537)
Q Consensus 163 -~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~~~~~~~~~~ 237 (537)
.|+++|++.+...+...+++.++++ ++|+++.++...+..+|..+++.+++. ++||+.|++.+++.++..+..+
T Consensus 113 ~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~ 191 (455)
T TIGR00892 113 TAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGA 191 (455)
T ss_pred HHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 5799999998877778888899996 789999999999999998888777654 5899999999988766554443
Q ss_pred cc-cCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHHHHHHHHhhh
Q psy4866 238 FM-PESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTG 316 (537)
Q Consensus 238 ~~-~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (537)
++ ++.+.. .+.+. +..+ ...... ..+ +.+ .....++..+....+.++++..+......++ ...+
T Consensus 192 ~~~~~~~~~--~~~~~-~~~~---~~~~~~--~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~ 256 (455)
T TIGR00892 192 LMRPVGPSQ--RVSKS-KSKE---GLPPDG--STK-KLS--KKSTAEKINRFLDFSLFTHRGFLVYLSGNVI----MFLG 256 (455)
T ss_pred HhCCCCccc--ccccc-cccc---cCCCCC--ccc-ccc--ccchhhhhhhhcchHHhcCchHHHHHHHHHH----HHHH
Confidence 33 322210 00000 0000 000000 000 000 0000000000001134444443322222222 2222
Q ss_pred HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhccc--CCcHHHHHhhHH--HHHHHHHHHHHHHhhhc
Q psy4866 317 VQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRA--GRRVLFLVSSAG--CSLFSFIAGLYYYVTIE 391 (537)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 391 (537)
......+++.+.++.+.+. ..+....+.+++.++++++.+++.||. ++++........ .+++.+++..
T Consensus 257 ~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~------- 329 (455)
T TIGR00892 257 FFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL------- 329 (455)
T ss_pred ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3445567777777766653 444667778888899999999999974 333333332222 2222222211
Q ss_pred cccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhh
Q psy4866 392 LQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG-MYSNF 470 (537)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~ 470 (537)
..+.+..++..++.+.+.+.. .+...+++.|.+|+++++++.|+.+...++|.+++|.+.|.+.+..| |...|
T Consensus 330 -----~~~~~~~~i~~~~~G~~~g~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f 403 (455)
T TIGR00892 330 -----AGDYTGLVIYCIFFGLSFGSV-GALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIF 403 (455)
T ss_pred -----hchHHHHHHHHHHHHHHhchH-HHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHH
Confidence 123334444455555554433 34455888899999999999999999999999999999999999874 77788
Q ss_pred hHhhHHHHHHHHH
Q psy4866 471 LFGGVSSLVCTVY 483 (537)
Q Consensus 471 ~~~~~~~~~~~~~ 483 (537)
.+.+++.+++.+.
T Consensus 404 ~~~~~~~li~~~~ 416 (455)
T TIGR00892 404 YASGSIVVSAGLF 416 (455)
T ss_pred HHhhHHHHHHHHH
Confidence 8777766665543
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-30 Score=252.39 Aligned_cols=353 Identities=14% Similarity=0.069 Sum_probs=254.5
Q ss_pred HHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHH
Q psy4866 70 TACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWI 149 (537)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~ 149 (537)
.+.++.++.+...+...+.+|.+.+ ++|.|..+.|++.+.+.++..+++++.|+++||+|||+++.++.++.+++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~lp~~~~---~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~ 86 (381)
T PRK03633 10 LLLCGLLLLTLAIAVLNTLVPLWLA---QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCA 86 (381)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677788889999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhhh---HHHHHHHHH
Q psy4866 150 IAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELS---YMNYLTYSL 226 (537)
Q Consensus 150 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~~---wr~~~~~~~ 226 (537)
++++++|++.++++|+++|++.+...+...+.+.+..++++|+++++++..+.++|..+++.+++.+. ++...+..+
T Consensus 87 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 166 (381)
T PRK03633 87 GLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTG 166 (381)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 99999999999999999999999998888888889999999999999999999999999999987642 122222222
Q ss_pred HHHHHHH-HHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHH
Q psy4866 227 IIPIIFT-VTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFM 305 (537)
Q Consensus 227 ~~~~~~~-~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (537)
....... +.....+|++ + + +++..+.++.++++..+.....
T Consensus 167 ~~~~~~~~~~~~~~~~~~-------------------------~------------~-~~~~~~~~~~~~~~~~~~~~~~ 208 (381)
T PRK03633 167 LVLAAILPLLFTRILNQQ-------------------------A------------E-NHDSTSIWPMLKLRQARLGVNG 208 (381)
T ss_pred HHHHHHHHHHHhcccCCC-------------------------C------------C-CCCCCCHHHHHHhcchHHHHHH
Confidence 2222111 1111122110 0 0 0001223344443333322111
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHH
Q psy4866 306 AFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGL 384 (537)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 384 (537)
..... ........++|.++++.+.+. ..+.......++.+++++..|++.||+++|+.+..+..+..++.+.+..
T Consensus 209 ~~~~~----~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~ 284 (381)
T PRK03633 209 CIISG----IVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLS 284 (381)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhh
Confidence 11111 123344567788887776653 2345566777888999999999999999999888777666665443321
Q ss_pred HHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4866 385 YYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHI 464 (537)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 464 (537)
.........+++.+.. ...|...+.+.|..|+++++...+..+...++|.+++|.+.|.+.|+.
T Consensus 285 ---------------~~~~~~~~~l~g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~ 348 (381)
T PRK03633 285 ---------------QAAMAPALFILGAAGF-TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY 348 (381)
T ss_pred ---------------hHHHHHHHHHHHHHHH-hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0111222233333322 334556677888888888888888888889999999999999999999
Q ss_pred ccchhhhHhhHHHHHHHHH
Q psy4866 465 GMYSNFLFGGVSSLVCTVY 483 (537)
Q Consensus 465 g~~~~~~~~~~~~~~~~~~ 483 (537)
|+...|.+.+.+.++..+.
T Consensus 349 g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 349 SDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred CccHHHHHHHHHHHHHHHH
Confidence 9988888877777655443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-30 Score=256.67 Aligned_cols=362 Identities=14% Similarity=0.086 Sum_probs=256.9
Q ss_pred HHhhhhhhhhhccchhhHHhhhcCCCCCCCCCCh-----hhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHH
Q psy4866 72 CIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNE-----GSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTA 146 (537)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~ 146 (537)
.++.++.++..+...+.+|.+.+ ++|.+..+ .|++.+++.++..++.+++|+++||+|||+++..+.++.++
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 96 (408)
T PRK09874 20 WLGCFLTGAAFSLVMPFLPLYVE---QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGI 96 (408)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHH---HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHH
Confidence 34455666777788899999999 88888665 48999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHH
Q psy4866 147 SWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYL 222 (537)
Q Consensus 147 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~ 222 (537)
+.+++.++++++.+++.|++.|++.+ ..+....++.+++|+++|++++++...+..+|.++++.+++. .+||+.|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 175 (408)
T PRK09874 97 VMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVF 175 (408)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 99999999999999999999999855 567778889999999999999999999999999888888765 4899999
Q ss_pred HHHHHHHHHHHHH-hhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHH
Q psy4866 223 TYSLIIPIIFTVT-FMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKA 301 (537)
Q Consensus 223 ~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (537)
++.+++.++..+. .+++||.++.. + +++..+. ....+.++++....
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~----~-------------------~~~~~~~----------~~~~~~~~~~~~~~ 222 (408)
T PRK09874 176 FITASVLFLCFLVTLFCIRENFQPV----S-------------------KKEMLHM----------REVVTSLKNPKLVL 222 (408)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccc----c-------------------chhhhHH----------HHHHHhCcCCchHH
Confidence 9988877665443 44456543100 0 0000000 00111222222211
Q ss_pred -HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-C----hhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHH
Q psy4866 302 -FVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-P----SDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGC 375 (537)
Q Consensus 302 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 375 (537)
......+.. ........+.+.+..+.+... + .+....+.+++.+++.+..|++.||++||+.+..+..+.
T Consensus 223 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~ 298 (408)
T PRK09874 223 SLFVTTLIIQ----VATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFS 298 (408)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 111111111 112233444555555433221 1 123334456777888889999999999999988877766
Q ss_pred HHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHH
Q psy4866 376 SLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYK 455 (537)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 455 (537)
.++.+.+... ...+...+...+.+.+.+.. .+...+...+..|++.+|+.+++.+....+|..++|.
T Consensus 299 ~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~ 365 (408)
T PRK09874 299 VLLLIPMSFV------------QTPLQLGILRFLLGAADGAL-LPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPL 365 (408)
T ss_pred HHHHHHHHHh------------ccHHHHHHHHHHHHhhhHhh-HHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHH
Confidence 6555444331 12333344444555554443 3444467778889899999999999999999999999
Q ss_pred HHHHHHHhhccchhhhHhhHHHHHHHHHHHhh
Q psy4866 456 LFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYF 487 (537)
Q Consensus 456 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 487 (537)
+.|.+.+..|++..|.+.+++.+++.++.+..
T Consensus 366 ~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 366 MGAAISANYGFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888877766444
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-31 Score=265.68 Aligned_cols=390 Identities=11% Similarity=0.084 Sum_probs=256.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhccchhhHHhhhcC-------------------CCCCCCCCChhhHHHHHHHHHHhhhhhh
Q psy4866 63 LFSFLCVTACIAAFTTGMSFAWSAPVLEELLSK-------------------ESPIPMSPNEGSWVVAIIEIGNYLSPIP 123 (537)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~s~~~~~~~~s~~~~~~~~~~~~ 123 (537)
.+|.++.++.++......+....+...+.+.++ .+|++++..+.|++.+++.+++.+++++
T Consensus 16 ~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~ 95 (465)
T TIGR00894 16 FRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQIP 95 (465)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHcc
Confidence 344455555555555455555555555444331 1168899999999999999999999999
Q ss_pred hHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHH
Q psy4866 124 AGMLVNRIGRKWSLLMTGPITTASWIIAMYS--RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQIS 201 (537)
Q Consensus 124 ~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 201 (537)
.|+++||+|||+++.++.++.+++.+++.++ .+++.+++.|+++|++.+...+....++.|++|+++|++++++...+
T Consensus 96 ~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 175 (465)
T TIGR00894 96 VGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSG 175 (465)
T ss_pred hHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998887654 56888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh----h-hHHHHHHHHHHHHHHHHHHhh-cccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHH
Q psy4866 202 CHLGILYTYVLGSE----L-SYMNYLTYSLIIPIIFTVTFM-FMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQ 275 (537)
Q Consensus 202 ~~~G~~i~~~l~~~----~-~wr~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (537)
..+|.++++.+++. . +||+.|++.++++++..+.++ +.+|+|+.. .+.++. .++..+
T Consensus 176 ~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~--------------~~~~i~ 238 (465)
T TIGR00894 176 FQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH---PCISKF--------------EKKYIN 238 (465)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC---CCCCHH--------------HHHHHH
Confidence 99999999888754 2 899999999988877655544 456776321 000000 000000
Q ss_pred HH-HHhhhhcccccchHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCCC-ChhHHHHHHHHHHHHHh
Q psy4866 276 II-KQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETFL-PSDYISILFAIILLVSI 352 (537)
Q Consensus 276 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~ 352 (537)
+. +++..+.+.+.+++++++++.. +...+..++...+.+.+..|+|.++++. +.+. ..+....+..++.+++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~ 314 (465)
T TIGR00894 239 SSLQGQKGSTRQSLPIKAIPKSLPV----WAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCS 314 (465)
T ss_pred hhcccccCCCCCCCCHHHHhcCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHH
Confidence 00 0000011113456666665443 3333444444445677788999998764 5542 34466677788899999
Q ss_pred hhHhhhhcccCCcHHH--------HHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhh
Q psy4866 353 FPSTYYIDRAGRRVLF--------LVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTP 424 (537)
Q Consensus 353 ~~~g~l~d~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (537)
+++|+++||+++|+.. ..+......+...+... .. ....+..++.+.+.+.+.+. ..+....
T Consensus 315 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~~~~~l~~~~~~~-~~~~~~~ 384 (465)
T TIGR00894 315 IFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALP---YL------SAAFYLTIIILTLANAVSSG-PLAGVLI 384 (465)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH---Hc------CCchHHHHHHHHHHHHHhhh-hhhhhhh
Confidence 9999999987644211 11111111111111111 00 11222222233333333222 2222334
Q ss_pred hccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhh---ccchhhhHhhHHHHHHHHHH
Q psy4866 425 LLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHI---GMYSNFLFGGVSSLVCTVYL 484 (537)
Q Consensus 425 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~~~ 484 (537)
...|..|. .+|.+.|+.+..+.++++++|.+.|.+.+.. +|...|.+.+++.+++.++.
T Consensus 385 ~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~ 446 (465)
T TIGR00894 385 NSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY 446 (465)
T ss_pred chhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence 55566665 7899999999999999999999999887653 35667777777777766554
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-30 Score=237.80 Aligned_cols=356 Identities=16% Similarity=0.172 Sum_probs=272.1
Q ss_pred ccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHH---H
Q psy4866 83 AWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVL---G 159 (537)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~---~ 159 (537)
...+++.+.+.+ ++++|+.|.+++.++..+...+..++.|.+.||||.|++..++.++..+-.+..+++.+++ +
T Consensus 31 ~l~s~l~~~i~~---~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ 107 (417)
T COG2223 31 TLFSPLGVFIKS---DFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQ 107 (417)
T ss_pred HHHHHHHhhhcc---ccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHH
Confidence 345666777777 9999999999999999999999999999999999999999999999999999999987555 9
Q ss_pred HHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHH----HHHhhhhh---HHHHHHHHHHHHHHH
Q psy4866 160 LYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYT----YVLGSELS---YMNYLTYSLIIPIIF 232 (537)
Q Consensus 160 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~----~~l~~~~~---wr~~~~~~~~~~~~~ 232 (537)
+++.+++.|++ |..+.+...++++|+||+++|.++++.. ..++|..+. |.+....+ ||....+..+..++.
T Consensus 108 ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~ 185 (417)
T COG2223 108 LLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIA 185 (417)
T ss_pred HHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999998 6677899999999999999999999998 777777654 55555567 999888888777664
Q ss_pred H-HHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccc-cchHHhhccchHHHHHHHHHHHH
Q psy4866 233 T-VTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVER-TNFREFMGRSNMKAFVFMAFLAV 310 (537)
Q Consensus 233 ~-~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 310 (537)
. ..++...|.|... ...++.. ..++.+++++. .+...+.+
T Consensus 186 ~v~~~~~~~d~p~~r----------------------------------~~~~~~~~~~~~~v~~~~~----~W~lsllY 227 (417)
T COG2223 186 AVLAWLGMNDVPEHR----------------------------------ASVKPQLPAQLKAVFSNKD----TWLLSLLY 227 (417)
T ss_pred HHHHHHHhCCChhhh----------------------------------ccccccchhHHHHHhcCcc----hHHHHHHH
Confidence 4 4555566665210 0000001 23344444444 44555566
Q ss_pred HHHhhhHHHHHHHHHHHHHhc-CCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHh
Q psy4866 311 FRAFTGVQSIIAYANTIFASS-ETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYV 388 (537)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (537)
+..+.++..+..++|.++++. +.+. +++.......+.+.+.++++|+++||+|.+|.+...+..++++..++......
T Consensus 228 ~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~ 307 (417)
T COG2223 228 FATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTG 307 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccc
Confidence 666777889999999998765 4442 45577777888899999999999999999999999998888888777664211
Q ss_pred hhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc-cc
Q psy4866 389 TIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG-MY 467 (537)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~ 467 (537)
.. ...+........+....+.+.+-.. .+.++...+|++ .|.+.|+...++.+|++.-|...|...+..| +.
T Consensus 308 ~~-----~~~~~~~~~~~~l~l~~~~G~GnGs-vfk~Ip~if~~~-~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~ 380 (417)
T COG2223 308 FG-----HGGSFVVFVAVFLALFVFAGLGNGS-VFKMIPVIFPKE-TGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYT 380 (417)
T ss_pred cc-----cCcchHHHHHHHHHHHHHhccCcch-heeechHHHHhh-hhHHHHHHHHhccccccchhHHHHHHHHhcccHH
Confidence 10 0122333344344455555555444 457888888775 6999999999999999999999999999998 66
Q ss_pred hhhhHhhHHHHHHHHHHHhhc
Q psy4866 468 SNFLFGGVSSLVCTVYLYYFL 488 (537)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~ 488 (537)
..|+++..+.+++.++.+..+
T Consensus 381 ~~f~~~~~~~~~a~v~~~~~y 401 (417)
T COG2223 381 GAFMLLLAFYLVALVLTWALY 401 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888887766554
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=254.32 Aligned_cols=347 Identities=13% Similarity=0.036 Sum_probs=256.4
Q ss_pred HHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy4866 72 CIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIA 151 (537)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~ 151 (537)
.++.++..+..+...+.+|.+.. +++.+..+.+++.+++.++..++++++|+++||+|||++++.+.++..++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 5 FAAQLISLIGTAITQVALPLYVL---AGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence 34556666677778888899998 899999999999999999999999999999999999999999999999999988
Q ss_pred HHHh-----hHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHH
Q psy4866 152 MYSR-----SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYL 222 (537)
Q Consensus 152 ~~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~ 222 (537)
++++ +++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++. .+||+.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~ 161 (365)
T TIGR00900 82 PFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAI 161 (365)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 8888 999999999999999999999999999999999999999999999999999999888765 4899999
Q ss_pred HHHHHHHHHHHHHhhcc--cCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHH
Q psy4866 223 TYSLIIPIIFTVTFMFM--PESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMK 300 (537)
Q Consensus 223 ~~~~~~~~~~~~~~~~~--~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (537)
++.++..++..+..+.+ ||.++. ++ ++ ..++...+ .+..++.+++++..+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~-------------~~--~~~~~~~~---------~~~~~~~~~~~~~~~ 213 (365)
T TIGR00900 162 WVDAVGFAISALLIVSVRIPELAAS----EI-------------QA--LSNAVLRD---------TREGIKFVLKNPLLR 213 (365)
T ss_pred HHHHHHHHHHHHHHHhcccccCCCc----cc-------------cc--cchhHHHH---------HHhHHHHHHcCcHHH
Confidence 98887766654444333 332200 00 00 00000000 012334455554444
Q ss_pred HHHHHHHHHHHHHhhhHHHHH-HHHHHHHHh-cCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHH
Q psy4866 301 AFVFMAFLAVFRAFTGVQSII-AYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSL 377 (537)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 377 (537)
...+...+.... ..... .+.|.+.++ .+.+. ..+.......++.+++.++.+++.||.+||+.+..+..+.++
T Consensus 214 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 289 (365)
T TIGR00900 214 TLLLLALLFNLV----FAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGL 289 (365)
T ss_pred HHHHHHHHHHHH----HHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 333333322222 22222 566777665 34442 344666677888899999999999999999988877666666
Q ss_pred HHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHH
Q psy4866 378 FSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLF 457 (537)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 457 (537)
+...+... +.+.+...+..++.+.+.+.. .+...++..|..|++.|+++.|+.+...+++..++|.+.
T Consensus 290 ~~~~~~~~-----------~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 357 (365)
T TIGR00900 290 AILVVGLT-----------PPNFPLFLVLWFAIGVGYGPI-NVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILA 357 (365)
T ss_pred HHHHHHhh-----------chhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555442 111334444555555555443 455568899999999999999999999999999999999
Q ss_pred HHHHHhhc
Q psy4866 458 FLMDKHIG 465 (537)
Q Consensus 458 g~l~~~~g 465 (537)
|.+.|..|
T Consensus 358 g~l~~~~g 365 (365)
T TIGR00900 358 GPLADHLG 365 (365)
T ss_pred HHHHHHcC
Confidence 99998754
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.4e-30 Score=256.75 Aligned_cols=376 Identities=13% Similarity=0.105 Sum_probs=260.7
Q ss_pred HHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHH
Q psy4866 71 ACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWII 150 (537)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~ 150 (537)
++++.++..++.....+.+|.+.+ ++|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 91 (471)
T PRK10504 15 VAFGFFMQSLDTTIVNTALPSMAQ---SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLF 91 (471)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH---HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 445567777888888899999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHH
Q psy4866 151 AMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSL 226 (537)
Q Consensus 151 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~ 226 (537)
++++++++.++++|+++|++.+...+...+++.|++|+++|+++.++.....++|..++|.+++. .+||+.|++..
T Consensus 92 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~ 171 (471)
T PRK10504 92 CALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINI 171 (471)
T ss_pred HHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888765 48999999988
Q ss_pred HHHHHHHHHh-hcccCChHHHHHhCCHHHHHHHH--------Hh-hcCCChh-hHHHHHH------------HHHHhhhh
Q psy4866 227 IIPIIFTVTF-MFMPESPYFYAIKNQEGKAIESL--------KW-LRNKTAD-QVQSELQ------------IIKQNTSK 283 (537)
Q Consensus 227 ~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~--------~~-~~~~~~~-~~~~~~~------------~~~~~~~~ 283 (537)
+...+..+.. ...|+.+. .+.+.+...... .. ..+.+.. ....... ...++...
T Consensus 172 ~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (471)
T PRK10504 172 PVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNN 248 (471)
T ss_pred HHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7766554433 34454431 111222111100 00 0111000 0000000 00000111
Q ss_pred cccccchHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcc
Q psy4866 284 NVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDR 361 (537)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~ 361 (537)
.++..+. ++++++.+.......++.. .+......+.|.+++. .+.+. ..++......++.+++.++.+++.||
T Consensus 249 ~~~~~~~-~l~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r 323 (471)
T PRK10504 249 NRALFSL-KLFRTRTFSLGLAGSFAGR----IGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR 323 (471)
T ss_pred CCCccCH-HHhcccchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222 3555554433333333222 2244455667777764 44432 33455666677777888899999999
Q ss_pred cCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHH
Q psy4866 362 AGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAV 441 (537)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 441 (537)
+++|+.+..+..+..+...++.+.. .....+...+...+.+.+.+....+ ...+..+..|++.++.++|+
T Consensus 324 ~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~ 393 (471)
T PRK10504 324 FGYRRVLVATTLGLALVSLLFMLVA---------LLGWYYLLPFVLFLQGMVNSTRFSS-MNTLTLKDLPDNLASSGNSL 393 (471)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhcc---------ccccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCHHhccchHHH
Confidence 9999999888887777665554421 0111222222333444444444433 44777888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q psy4866 442 INILCTTLGLISYKLFFLMDKHIGMY 467 (537)
Q Consensus 442 ~~~~~~~g~~~~~~~~g~l~~~~g~~ 467 (537)
.++...+|..+++.+.|.+.+..|+.
T Consensus 394 ~~~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 394 LSMIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999998877653
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-31 Score=260.01 Aligned_cols=368 Identities=12% Similarity=0.078 Sum_probs=248.0
Q ss_pred hhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy4866 75 AFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS 154 (537)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~ 154 (537)
.+...++....+...|.+.+ ++|.+..+.+++.+++.++..++.++.|+++||+|||++++++.++.+++.++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 80 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLVE---EIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS 80 (379)
T ss_pred hhHHHHhHHhhhhhhHHHHH---HhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh
Confidence 34455667777888899999 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHH-HHhhh----hhHHHHHHHHHHHH
Q psy4866 155 RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTY-VLGSE----LSYMNYLTYSLIIP 229 (537)
Q Consensus 155 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~-~l~~~----~~wr~~~~~~~~~~ 229 (537)
++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++ .++.. .+||+.|++.+++.
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (379)
T TIGR00881 81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIA 160 (379)
T ss_pred hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988 34433 48999999888777
Q ss_pred HHH-HHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHHH
Q psy4866 230 IIF-TVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFL 308 (537)
Q Consensus 230 ~~~-~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (537)
++. ++..++.||+|+....+.+. + ...++. +.++.+++.+....+...+++++++..+...+...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 226 (379)
T TIGR00881 161 IIVSLICFLLLRDSPQSCGLPPAE-E----------MPNEEP--DGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYV- 226 (379)
T ss_pred HHHHHHHheeeCCCccccccCccc-c----------Cccccc--ccccccccccccchHHHHHHHHhcchHHHHHHHHH-
Confidence 654 44455677766321000000 0 000000 00000000000011122344444444333222222
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhc-CCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHH
Q psy4866 309 AVFRAFTGVQSIIAYANTIFASS-ETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYY 386 (537)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (537)
........+..+.|.++.+. +.+. +.........++.+++.++.+++.||..+++...............+....
T Consensus 227 ---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (379)
T TIGR00881 227 ---FVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYW 303 (379)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHh
Confidence 22223455666778877653 5542 345667778888999999999999986433222222111111111111111
Q ss_pred HhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy4866 387 YVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGM 466 (537)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 466 (537)
... ....+...+..++.+.. ..+..+....+..|.+|++.|+++.|+.+...++|+.++|.+.|.+.+..||
T Consensus 304 ~~~-------~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 375 (379)
T TIGR00881 304 LNP-------AANPLMDLICLFALGFL-VYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGW 375 (379)
T ss_pred cCc-------chhHHHHHHHHHHHHHH-HhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcc
Confidence 000 01122222333333332 2223334456788999999999999999999999999999999999999988
Q ss_pred chhh
Q psy4866 467 YSNF 470 (537)
Q Consensus 467 ~~~~ 470 (537)
+..|
T Consensus 376 ~~~f 379 (379)
T TIGR00881 376 AGAF 379 (379)
T ss_pred cccC
Confidence 7643
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=5e-30 Score=259.92 Aligned_cols=379 Identities=13% Similarity=0.068 Sum_probs=270.2
Q ss_pred HHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHH
Q psy4866 67 LCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTA 146 (537)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~ 146 (537)
+...++++.++..++.....+.+|.+.+ ++|.+..+.+++.+.+.++..++.++.|+++||+|||++++++.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 79 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAG---DLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTL 79 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3456677788888999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHH
Q psy4866 147 SWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYL 222 (537)
Q Consensus 147 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~ 222 (537)
+++++++++|++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..+++.+++. .+||+.|
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f 159 (485)
T TIGR00711 80 GSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIF 159 (485)
T ss_pred HHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehh
Confidence 999999999999999999999999999999999999999999999999999999999999999888766 4899999
Q ss_pred HHHHHHHHHHHH-HhhcccCChHHHHHhCCHHHHHHH------------HHhhcCCChhhHHHHHH-----------HHH
Q psy4866 223 TYSLIIPIIFTV-TFMFMPESPYFYAIKNQEGKAIES------------LKWLRNKTADQVQSELQ-----------IIK 278 (537)
Q Consensus 223 ~~~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~a~~~------------~~~~~~~~~~~~~~~~~-----------~~~ 278 (537)
++.++++++..+ ..+++||+++. .+++.+..... ..+-.+....+...... ...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (485)
T TIGR00711 160 LINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVV 237 (485)
T ss_pred hhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 998888766543 34456665421 11111111100 00000000000000000 000
Q ss_pred HhhhhcccccchHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCCC-ChhHHHHHHHHHHHHHhhhHh
Q psy4866 279 QNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETFL-PSDYISILFAIILLVSIFPST 356 (537)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g 356 (537)
.+.. .+++....++++++..+...+..++..+ .......+.|.++++. +.+. +.+....+..++.+++.++.|
T Consensus 238 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g 312 (485)
T TIGR00711 238 WELT-DDNPLVDLRLFKYRNFTIGCVYMSLLGL----GLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAG 312 (485)
T ss_pred HHHc-CCCCccCHHHHcCCChHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001 1111111245554444333333332222 2445566778887764 4442 445667778889999999999
Q ss_pred hhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccc
Q psy4866 357 YYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKA 436 (537)
Q Consensus 357 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 436 (537)
++.||++||+.+..+..+.+++...+.+.. . .....+.......+.+.+.+....+.. ....+..|+++++
T Consensus 313 ~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~g 383 (485)
T TIGR00711 313 RMGDKIDPRKLVTIGLILYAVGFYWRAFTF--T------PDTPFLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPHKIA 383 (485)
T ss_pred HHHhhcCcHHHHHHHHHHHHHHHHHHhccC--C------CCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHh
Confidence 999999999998888877777666554211 0 112223334445555555555444443 5566778999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4866 437 VSCAVINILCTTLGLISYKLFFLMDKHI 464 (537)
Q Consensus 437 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 464 (537)
++.|+.+..+.+|+.+++.+.+.+.++.
T Consensus 384 ~~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 384 RGSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988753
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-32 Score=250.96 Aligned_cols=366 Identities=13% Similarity=0.064 Sum_probs=248.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHH
Q psy4866 63 LFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGP 142 (537)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~ 142 (537)
..+..++++++.+.++.++...+..+.+.+++ .+|++++..|++.+.+.+.+.+++++.|+++|||.||+++.+|..
T Consensus 30 ~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~---~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~ 106 (493)
T KOG1330|consen 30 SPTLTLVILCLVNLMNYADRYTIAGVLKEVQT---YFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIF 106 (493)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhhhhhHHHHH---hcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHH
Confidence 44556777888899999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh-----h
Q psy4866 143 ITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-----S 217 (537)
Q Consensus 143 l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~-----~ 217 (537)
++.++.++++++..||+++++|.+.|+|.+...++++++++|.+|.++|++++++++.+..+|..+|.+++..+ .
T Consensus 107 iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~ 186 (493)
T KOG1330|consen 107 IWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFW 186 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988877653 4
Q ss_pred HHHHHHHHHHHHHHHHHH-hhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHh---
Q psy4866 218 YMNYLTYSLIIPIIFTVT-FMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREF--- 293 (537)
Q Consensus 218 wr~~~~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 293 (537)
|||.|+..++++++..++ .++.+|.+| +..+|. .+.+ .........++|+
T Consensus 187 Wr~af~~~avl~vi~~~L~~~f~~eP~r-----ga~~~~-------~~~~--------------~~~~~~ts~~kDl~~l 240 (493)
T KOG1330|consen 187 WRWAFRGSAVLGVIVGLLVFLFVREPER-----GARDEV-------DGEN--------------KMVKPFTSVWKDLKVL 240 (493)
T ss_pred eEEEEEeehHHHHHHHHHHHhhccCccc-----cccccc-------ccCC--------------cCCCCccchHHHHHHH
Confidence 999999999999886654 455666541 100000 0000 0000112222222
Q ss_pred hccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCC-------c
Q psy4866 294 MGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGR-------R 365 (537)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-------~ 365 (537)
.+.+......+.+....+...+.......+.+...+-.+... ...+...+...++.+|.+++|.++||+.+ .
T Consensus 241 ~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~ 320 (493)
T KOG1330|consen 241 AKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTL 320 (493)
T ss_pred HccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccch
Confidence 221222222222222222211112222333333333344333 33467777888999999999999999432 1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHH
Q psy4866 366 VLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINIL 445 (537)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 445 (537)
+.-.+...+.+...+.+.+..... ........+.+++++............-+..|++|++.|.+++++-..+
T Consensus 321 ~~~q~~~~~g~~~s~~~L~~~~~~-------~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~ 393 (493)
T KOG1330|consen 321 RASQLSAALGAPLSIPFLFLFPAF-------TSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVF 393 (493)
T ss_pred hHHHHHHhhhhhHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHH
Confidence 111111111111111111111111 1223333334444444443333334447888999999999999998877
Q ss_pred HHH-HHHHHHHHHHHHHHhh
Q psy4866 446 CTT-LGLISYKLFFLMDKHI 464 (537)
Q Consensus 446 ~~~-g~~~~~~~~g~l~~~~ 464 (537)
..+ |.+-+|++.|.+.|+.
T Consensus 394 ~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 394 EHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred HHHhccCCCcceehhHHHHh
Confidence 655 4455566999998864
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=246.76 Aligned_cols=339 Identities=12% Similarity=0.065 Sum_probs=240.5
Q ss_pred hhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhH
Q psy4866 78 TGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSV 157 (537)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~ 157 (537)
..+......|.+|.+.+ ++|.++++.+++.+++.++..++++++|+++||+|||+++..+.++..++.+++++++++
T Consensus 18 ~~~~~~~~~p~~~~i~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 94 (401)
T PRK11043 18 GFLATDMYLPAFKAIQA---DLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESA 94 (401)
T ss_pred HHHHHHHHHhhHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCH
Confidence 34556677888999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHH
Q psy4866 158 LGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFT 233 (537)
Q Consensus 158 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~~~~~~ 233 (537)
+.+++.|+++|++.+...+...+++.|++|++++++..+.......+|..++|.+++. .+||+.|++.+++.++..
T Consensus 95 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~ 174 (401)
T PRK11043 95 AQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLI 174 (401)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 9999999999999888888888999999999989988888887788888888777654 589999999888877766
Q ss_pred HHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHHHHHHHH
Q psy4866 234 VTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRA 313 (537)
Q Consensus 234 ~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (537)
+..++++|+++. .+ + ++.+.+++++++++..+...+...+..
T Consensus 175 ~~~~~~~~~~~~----~~--------------~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 216 (401)
T PRK11043 175 LPTLRLKPSKKA----RK--------------Q-----------------SQDALTFKQLLKSKTYLGNVLIFAACS--- 216 (401)
T ss_pred HHHHHcCCCCCc----cc--------------c-----------------chHHHHHHHHHcChhHHHHHHHHHHHH---
Confidence 555556554310 00 0 000123344554333332222222111
Q ss_pred hhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhcc
Q psy4866 314 FTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIEL 392 (537)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (537)
..+.....+.|.++++.+.+. ..+.......++.+++.++.+++.||+++|+.......+.+++.+.+.......
T Consensus 217 -~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 292 (401)
T PRK11043 217 -AAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLS--- 292 (401)
T ss_pred -HHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 123445566788877766653 233445556678888999999999999998876665555544443332221111
Q ss_pred ccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy4866 393 QYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMY 467 (537)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 467 (537)
....+..++...+.+.+.+.. .+.......+..| +.+|++.|+.+.....++..++.+.|.+.+.....
T Consensus 293 ----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~ 361 (401)
T PRK11043 293 ----HPSLVPLLIPFCVMAAANGAI-YPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLLT 361 (401)
T ss_pred ----cCcHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhH
Confidence 112222333334444444443 3444456666666 46999999999999999999999999887753333
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-29 Score=246.73 Aligned_cols=357 Identities=12% Similarity=0.128 Sum_probs=248.5
Q ss_pred HHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHH
Q psy4866 69 VTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASW 148 (537)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~ 148 (537)
..+.+..+..++......+.+|.+++ ++|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++.++.+++++++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~p~i~~---~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~ 105 (438)
T PRK10133 29 ALLCSLFFLWAVANNLNDILLPQFQQ---AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGA 105 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 44445567778888888999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHH---HHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----------
Q psy4866 149 IIA---MYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE---------- 215 (537)
Q Consensus 149 ~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~---------- 215 (537)
+++ .++++++.++++|+++|+|.|...+..+.++.|+.++++|...+++.+..+.+|..+++.++..
T Consensus 106 ~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~ 185 (438)
T PRK10133 106 ALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQS 185 (438)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 875 4688999999999999999999999999999998777777778889999989999888877531
Q ss_pred --------------------hhHHHHHHHHHHH-HHHHHHH-hhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHH
Q psy4866 216 --------------------LSYMNYLTYSLII-PIIFTVT-FMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSE 273 (537)
Q Consensus 216 --------------------~~wr~~~~~~~~~-~~~~~~~-~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~ 273 (537)
.+||++|+....+ .++..+. ...+||.|. ++ .
T Consensus 186 ~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~-----~~--------------~------- 239 (438)
T PRK10133 186 QDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS-----DN--------------H------- 239 (438)
T ss_pred hhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc--------------c-------
Confidence 2466666543333 3232222 223444220 00 0
Q ss_pred HHHHHHhhhhcccccchHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-Hh-cCCCC-ChhHHHHHHHHHHHH
Q psy4866 274 LQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIF-AS-SETFL-PSDYISILFAIILLV 350 (537)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~-~~~~~~~~~~~~~~~ 350 (537)
...+........+++++++..+...+..++.. ........|.+.++ ++ .+.+. ..+.......++.++
T Consensus 240 -----~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~v 310 (438)
T PRK10133 240 -----SDAKQGSFSASLSRLARIRHWRWAVLAQFCYV----GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFI 310 (438)
T ss_pred -----ccccccchhhhHHHHHhCchHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 00000000122345555554443333322222 22334445666664 33 35442 345677888899999
Q ss_pred HhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccC
Q psy4866 351 SIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYF 430 (537)
Q Consensus 351 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (537)
++++++++.||+++|+.+..+..+..+.+++..+. .. ...+..+.+.+++.+..+ |..++...+..
T Consensus 311 G~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~------------~~-~~~~~~~~l~glg~~~i~-P~~~s~a~~~~ 376 (438)
T PRK10133 311 GRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA------------GG-HVGLIALTLCSAFMSIQY-PTIFSLGIKNL 376 (438)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc------------CC-hHHHHHHHHHHHHHHHHH-HHHHHHHHccc
Confidence 99999999999999999888766665554443321 11 123444556666666655 55568888887
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhhHhhHHHHH
Q psy4866 431 SSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG-MYSNFLFGGVSSLV 479 (537)
Q Consensus 431 p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~ 479 (537)
|++ .+++.++..+ ..+|+.++|.+.|.+.|..| .+..|++..+..+.
T Consensus 377 ~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~ 424 (438)
T PRK10133 377 GQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV 424 (438)
T ss_pred chh-hccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 764 6788888764 55788999999999999887 56666544443333
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=247.48 Aligned_cols=357 Identities=11% Similarity=0.073 Sum_probs=239.8
Q ss_pred ccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHH---H-HhhHH
Q psy4866 83 AWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAM---Y-SRSVL 158 (537)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~---~-~~~~~ 158 (537)
+...+.++.+.+ ++|.|..+.|++.+.+.++..++.+++|+++||+|||+++..+.++.+++++++. + .++++
T Consensus 30 ~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (402)
T TIGR00897 30 GLEQGWLSPFLK---ALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYP 106 (402)
T ss_pred hhHHHhHHHHHH---HhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHH
Confidence 334445566777 8899999999999999999999999999999999999999999999988877653 3 25788
Q ss_pred HHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHH-HHHHHHhhh----hhHHHHHHHHHHHHHHHH
Q psy4866 159 GLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGI-LYTYVLGSE----LSYMNYLTYSLIIPIIFT 233 (537)
Q Consensus 159 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~i~~~l~~~----~~wr~~~~~~~~~~~~~~ 233 (537)
.+++.|+++|++.+...+...+.+.+++|+++|++++++...+.++|. ++++.+++. ++|+..++.......+..
T Consensus 107 ~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~ 186 (402)
T TIGR00897 107 LILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGG 186 (402)
T ss_pred HHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 889999999999988888888889999999999999999999999996 578877654 476655554433333222
Q ss_pred -HHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHHHHHHH
Q psy4866 234 -VTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFR 312 (537)
Q Consensus 234 -~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (537)
+..++.++.++ +++. ++++ +.++ .+..++++++++..+...+. .+.
T Consensus 187 ~~~~~~~~~~~~-------~~~~-------~~~~------~~~~---------~~~~~~~~~~~~~~~~~~~~----~~~ 233 (402)
T TIGR00897 187 VIALFSNKDIFT-------PQHM-------QTRE------KFSE---------LGKAATILFTNPNVLLGGMV----RII 233 (402)
T ss_pred HHHHhccCCCCC-------cccc-------cCCc------chhh---------HHHHHHHHHcChhHHHHHHH----HHH
Confidence 22333443310 0000 0000 0000 01123345554443332222 222
Q ss_pred HhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHH-HhhHHHHHHHHHHHHHHHhhh
Q psy4866 313 AFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFL-VSSAGCSLFSFIAGLYYYVTI 390 (537)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 390 (537)
..........|.|.++++.+.+. +.........++.+++.++.|+++||++||+.+. .+.+...+..+.+.......
T Consensus 234 ~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~- 312 (402)
T TIGR00897 234 NTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHF- 312 (402)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence 33345566778898888776653 3335556677889999999999999999888764 22233333322222211000
Q ss_pred ccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Q psy4866 391 ELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNF 470 (537)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~ 470 (537)
....+...+...+.+.+.+. ..+.. ....|..| ++|+++.|+.+...+++..++|.+.|.+.+..|+...+
T Consensus 313 ------~~~~~~~~~~~~~~G~~~~~-~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~ 383 (402)
T TIGR00897 313 ------GHSFAVALIIAIALGIFLAG-YVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVV 383 (402)
T ss_pred ------CCcHHHHHHHHHHHHHHHHH-HHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 11223333444444444433 33433 45566544 57999999999999999999999999999999999888
Q ss_pred hHhhHHHHHHHHHHH
Q psy4866 471 LFGGVSSLVCTVYLY 485 (537)
Q Consensus 471 ~~~~~~~~~~~~~~~ 485 (537)
++.+++.+++.++..
T Consensus 384 ~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 384 WIFAALYVVSAFLTA 398 (402)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888887777666553
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-29 Score=244.79 Aligned_cols=356 Identities=12% Similarity=0.088 Sum_probs=246.3
Q ss_pred HhhhhhhhhhccchhhHHhh-hcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHH-HHHHHHHHHHHH
Q psy4866 73 IAAFTTGMSFAWSAPVLEEL-LSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLL-MTGPITTASWII 150 (537)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~-~~~~l~~~~~~~ 150 (537)
+..+..++..+...|.+|.+ .+ ++|.|..+.|++.+++.++..+.+++.|+++||+||||.++ .+.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~ 80 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSE---EVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLL 80 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHc---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHH
Confidence 34666777888888998875 56 89999999999999999999999999999999999888755 456666777888
Q ss_pred HHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchh--hhHhHHHHHHHHHHHHHHhhh----hhHHHHHHH
Q psy4866 151 AMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTI--GTLFQISCHLGILYTYVLGSE----LSYMNYLTY 224 (537)
Q Consensus 151 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~ 224 (537)
+++++|++.+++.|+++|.+.+...|...+++.|+.|+++|++. .+....+.++|.++++.+++. ++||+.|++
T Consensus 81 ~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~ 160 (375)
T TIGR00899 81 FAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLT 160 (375)
T ss_pred HHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHH
Confidence 89999999999999999988888888888899999887777654 567777777888888777654 589999999
Q ss_pred HHHHHHHHHHH-hhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHH
Q psy4866 225 SLIIPIIFTVT-FMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFV 303 (537)
Q Consensus 225 ~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (537)
.++..++..+. ++++||.|++..++ . .+.+.++.++++..+...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~-------------------~~~~~~~~~~~~~~~~~~ 205 (375)
T TIGR00899 161 AALAFVLCGVLVWLFLPSYPRGAPGA----------------L-------------------TRLEVRGLLASRDTRLLF 205 (375)
T ss_pred HHHHHHHHHHHHHHhCCCcccCcccc----------------c-------------------CcchhhhhhcCcchHHHH
Confidence 98877665544 45578876320000 0 000112233333333222
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHH
Q psy4866 304 FMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFI 381 (537)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 381 (537)
....+... .......+.|.++.+ .+.+. ..+.......+..+++.++.|++.||+++|+.+..+.++..+....
T Consensus 206 ~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~ 281 (375)
T TIGR00899 206 VACTLMWG----CNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTG 281 (375)
T ss_pred HHHHHHHH----HHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 22222221 122334455666543 45442 2334444455566778889999999999999887766554443333
Q ss_pred HHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4866 382 AGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMD 461 (537)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 461 (537)
+... .+.+.......+.+.+.+.. .+....+..|..|++ ++++.++.+...++|..++|.+.|.+.
T Consensus 282 ~~~~------------~~~~~~~~~~~~~g~~~g~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~ 347 (375)
T TIGR00899 282 LAAD------------NSLWALLMLQLLNAIFIGIL-AGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILA 347 (375)
T ss_pred HHHH------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 12233333334444444433 344557778888765 679999999999999999999999999
Q ss_pred HhhccchhhhHhhHHHHHHHHHH
Q psy4866 462 KHIGMYSNFLFGGVSSLVCTVYL 484 (537)
Q Consensus 462 ~~~g~~~~~~~~~~~~~~~~~~~ 484 (537)
+..|++..+.+.+++.+++.++.
T Consensus 348 ~~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 348 ERWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred HhccchhHHHHHHHHHHHHHHHH
Confidence 99999988888887777766654
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=246.44 Aligned_cols=339 Identities=16% Similarity=0.169 Sum_probs=243.3
Q ss_pred hhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q psy4866 76 FTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR 155 (537)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~ 155 (537)
+...+......+.+|.+.+ ++|.++.+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++++++
T Consensus 15 ~~~~~~~~~~~~~~p~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~ 91 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAA---DLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN 91 (385)
T ss_pred HHHHHHHHHhcccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence 4455677778889999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHH
Q psy4866 156 SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPII 231 (537)
Q Consensus 156 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~~~~ 231 (537)
+++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..+++.+++. .+||+.|++.++..++
T Consensus 92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~ 171 (385)
T TIGR00710 92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGIL 171 (385)
T ss_pred cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888888765 4899999988887766
Q ss_pred HHH-HhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHHHHH
Q psy4866 232 FTV-TFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAV 310 (537)
Q Consensus 232 ~~~-~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (537)
..+ ..++.||+++. .+ ++ +.++ ....+++.++++..+...+...+.
T Consensus 172 ~~~~~~~~~~~~~~~----~~-------------~~--~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~- 218 (385)
T TIGR00710 172 LSALIFFILPETLPY----EA-------------RI--QIST-------------YFETFLLLLKSKMFWGYALIYGAS- 218 (385)
T ss_pred HHHHHHHhCCCCCCC----cc-------------cC--CHHH-------------HHHHHHHHHcCchhHHHHHHHHHH-
Confidence 544 34456765410 00 00 0000 011233444444433333222222
Q ss_pred HHHhhhHHHHHHHHHHHHH-hcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHh
Q psy4866 311 FRAFTGVQSIIAYANTIFA-SSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYV 388 (537)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (537)
.........+.|.+++ ..+.+. ..+.......++.+++.++.+++.||+++|+.+..+..+..++.+++......
T Consensus 219 ---~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (385)
T TIGR00710 219 ---FGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAIL 295 (385)
T ss_pred ---HHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2223445556676665 345442 33456667788899999999999999999998888777766665555442211
Q ss_pred hhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4866 389 TIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 462 (537)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 462 (537)
.. ...........+.+.+.+... +.......|..| +.++++.++.+.....++.+.+.+.+.+.+
T Consensus 296 ~~-------~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~ 360 (385)
T TIGR00710 296 GL-------GSWAMIIGPMMFVGIGNSMIS-SIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHG 360 (385)
T ss_pred cc-------chHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 10 111222223334444444433 344567778777 568999999999888777777766774433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-29 Score=243.42 Aligned_cols=366 Identities=13% Similarity=0.068 Sum_probs=247.4
Q ss_pred HHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHH
Q psy4866 67 LCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTA 146 (537)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~ 146 (537)
......+..+...++.....|.+|.+.+ +++.+.++.++..+++.+++.++++++|+++||+|||++++.+.+++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~p~l~~i~~---~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~ 93 (413)
T PRK15403 17 FPMALILYDFAAYLTTDLIQPGIINVVR---DFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTL 93 (413)
T ss_pred HHHHHHHHHHHHHHHHHhhccCHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHH
Confidence 3444566677777888899999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHH
Q psy4866 147 SWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYL 222 (537)
Q Consensus 147 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~ 222 (537)
+++++++++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|..++|.+++. .+||+.|
T Consensus 94 ~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f 173 (413)
T PRK15403 94 ACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLF 173 (413)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999999999999999999887777788889999999999999999999999999998888764 4899999
Q ss_pred HHHHHHHHHHHHH-hhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHH
Q psy4866 223 TYSLIIPIIFTVT-FMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKA 301 (537)
Q Consensus 223 ~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (537)
++.++..++..+. ++++||+++. ++ ++ .+.. .....++++++++..+.
T Consensus 174 ~~~~~~~~i~~~~~~~~lp~~~~~---~~--------------~~-~~~~-------------~~~~~~~~ll~~~~~~~ 222 (413)
T PRK15403 174 AIIAVMGLIAFVGLLLAMPETVKR---GA--------------VP-FSAK-------------SVLRDFRNVFRNRLFLT 222 (413)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccc---cC--------------CC-CChH-------------HHHHHHHHHHcCHHHHH
Confidence 9998887765544 4567887420 00 00 0000 00123345555544443
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHH
Q psy4866 302 FVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFS 379 (537)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 379 (537)
..+...+ .......+..+.|.++++. +.+. ..++.......+.+++..+.+++.++..+++.......+..++.
T Consensus 223 ~~l~~~~----~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~ 298 (413)
T PRK15403 223 GAATLSL----SYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGL 298 (413)
T ss_pred HHHHHHH----HHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence 3333222 2223445556678777765 4442 23344555566777777777776654444443322222223332
Q ss_pred HHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q psy4866 380 FIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFL 459 (537)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 459 (537)
+++....... .+..+...+..++++.+.+..... .....-.. ....+|++.++.+.....+...++...++
T Consensus 299 ~l~~~~~~~~-------~~~~~~~~~~~~l~~~G~~~~~p~-~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~ 369 (413)
T PRK15403 299 ALLIVGNLLW-------PHVWLWSVLGTSLYAFGIGLIFPT-LFRFTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRW 369 (413)
T ss_pred HHHHHHHHHc-------cccHHHHHHHHHHHHHHHHHHhHH-HHHHHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222211000 112222344445555555444322 22222111 22247999999999999999999999998
Q ss_pred HHHhhccchhhhHhhHHHHHH
Q psy4866 460 MDKHIGMYSNFLFGGVSSLVC 480 (537)
Q Consensus 460 l~~~~g~~~~~~~~~~~~~~~ 480 (537)
+.+. +....|...++++.+.
T Consensus 370 ~~~~-~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 370 LWFN-GGRLPFHLLAVVAGVI 389 (413)
T ss_pred HHHc-CCchHHHHHHHHHHHH
Confidence 8776 5555665555554443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-29 Score=243.38 Aligned_cols=349 Identities=12% Similarity=0.083 Sum_probs=254.0
Q ss_pred HHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHH
Q psy4866 68 CVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTAS 147 (537)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~ 147 (537)
..++++..+..|+..+...+.+|.+++ ++|+|..+.|++.+.+.+++.+++++.|++.||+|||++++++.++++++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~---~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g 81 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQ---AFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALG 81 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 345667788888999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH---HhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh--------
Q psy4866 148 WIIAMY---SRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-------- 216 (537)
Q Consensus 148 ~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~-------- 216 (537)
.+++.. .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+++.++..+
T Consensus 82 ~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~ 161 (410)
T TIGR00885 82 AFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQ 161 (410)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 888654 358999999999999999999999999999999999999999999999999999988776532
Q ss_pred ----------------------hHHHHHHHHHHHHHHHHHHhhc--ccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHH
Q psy4866 217 ----------------------SYMNYLTYSLIIPIIFTVTFMF--MPESPYFYAIKNQEGKAIESLKWLRNKTADQVQS 272 (537)
Q Consensus 217 ----------------------~wr~~~~~~~~~~~~~~~~~~~--~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~ 272 (537)
+||++|++.+++.++..+...+ .||.+. + + +
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~---------------------~--~--~ 216 (410)
T TIGR00885 162 SQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH---------------------S--D--A 216 (410)
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc---------------------c--c--c
Confidence 5999999888877665443332 343210 0 0 0
Q ss_pred HHHHHHHhhhhcccccchHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCh---hHHHHHHHHHHH
Q psy4866 273 ELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPS---DYISILFAIILL 349 (537)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 349 (537)
++...+...+++++++..+...+..++... .......|++.+.++.+...+. ............
T Consensus 217 ---------~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg----~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~ 283 (410)
T TIGR00885 217 ---------KQISFSASLSRLARIRHYREGVIAQFFYVG----VQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFF 283 (410)
T ss_pred ---------ccccchhhHHHHHhChhHHHHHHHHHHHHH----HHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Confidence 000001123344554444333333333322 2334556777777654332221 233444557788
Q ss_pred HHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhcccc
Q psy4866 350 VSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEY 429 (537)
Q Consensus 350 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (537)
+|+++++++.||+++|+.+.+..++..+..++.... ........+.+.+++.+..+ |..++...+.
T Consensus 284 vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~-------------~~~~~~~~l~~~glf~s~~f-p~i~sl~~~~ 349 (410)
T TIGR00885 284 ISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA-------------GGHVGLYCLTLCSAFMSLMF-PTIYGIALKG 349 (410)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-------------CChHHHHHHHHHHHHHHHHH-HHHHHHHHhh
Confidence 999999999999999998888777777666655442 12233555566666666655 6667888898
Q ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhh------ccchhhhHh
Q psy4866 430 FSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHI------GMYSNFLFG 473 (537)
Q Consensus 430 ~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~------g~~~~~~~~ 473 (537)
.+++.+..+.++...+ +|+++.|.+.|.+.|.. +....|++.
T Consensus 350 ~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~ 397 (410)
T TIGR00885 350 LGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILP 397 (410)
T ss_pred hhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHHH
Confidence 8877654455554443 99999999999999964 355555543
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-29 Score=242.10 Aligned_cols=338 Identities=21% Similarity=0.277 Sum_probs=277.9
Q ss_pred HHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHH
Q psy4866 71 ACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWII 150 (537)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~ 150 (537)
..+..+...++.....+..|.+.+ +++.+..+.+++.+.+.++..++.++.|+++||+|||+.+.++.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAE---DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 445567777888888999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh----hHHHHHHHHH
Q psy4866 151 AMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL----SYMNYLTYSL 226 (537)
Q Consensus 151 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~----~wr~~~~~~~ 226 (537)
..++++++.+++.|++.|++.+...+...+++.|++|+++|++.+++...+..+|..+++.+++.+ +||+.+++.+
T Consensus 81 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (352)
T cd06174 81 LAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILA 160 (352)
T ss_pred HHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998888663 6999999988
Q ss_pred HHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHH
Q psy4866 227 IIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMA 306 (537)
Q Consensus 227 ~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (537)
+..++..+..++++ +.++..
T Consensus 161 ~~~~~~~~~~~~~~------------------------------------------------------------~~~~~~ 180 (352)
T cd06174 161 ILGLLLALLLLFLL------------------------------------------------------------RLLLLL 180 (352)
T ss_pred HHHHHHHHHHHHHH------------------------------------------------------------HHHHHH
Confidence 88777655544431 012222
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhc-CCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcH-HHHHhhHHHHHHHHHHH
Q psy4866 307 FLAVFRAFTGVQSIIAYANTIFASS-ETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRV-LFLVSSAGCSLFSFIAG 383 (537)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~-~~~~~~~~~~~~~~~~~ 383 (537)
.+..+...........+.+.+.++. +.+. +.+.......++.+++.++.+++.||+++|+ .+..+..+..++.+.+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 260 (352)
T cd06174 181 ALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA 260 (352)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 2223333334566777788887765 4432 3446777788999999999999999999999 88888888887777665
Q ss_pred HHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4866 384 LYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKH 463 (537)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 463 (537)
.. .+.+...+...+.+.+.+.. .+....+..|..|+++|++.+|+.+...+++..+++.+.+.+.+.
T Consensus 261 ~~------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~ 327 (352)
T cd06174 261 LA------------PSLALLLVALLLLGFGLGFA-FPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT 327 (352)
T ss_pred Hh------------ccHHHHHHHHHHHHHHHhcc-chhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 53 22344455555555655544 456679999999999999999999999999999999999999998
Q ss_pred hccchhhhHhhHHHHHHHHHH
Q psy4866 464 IGMYSNFLFGGVSSLVCTVYL 484 (537)
Q Consensus 464 ~g~~~~~~~~~~~~~~~~~~~ 484 (537)
.+++..+.+.+++.+++.++.
T Consensus 328 ~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 328 GGYGGVFLILAALALLAALLL 348 (352)
T ss_pred cCcchHHHHHHHHHHHHHHHh
Confidence 899988988888888776654
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-29 Score=245.97 Aligned_cols=355 Identities=17% Similarity=0.170 Sum_probs=239.8
Q ss_pred hhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHH-----HHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy4866 77 TTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAI-----IEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIA 151 (537)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~-----~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~ 151 (537)
.+.++....+...+.+.++. ..+.++.+.+.+.+. ..++..+++++.|+++||+|||++++++.++..++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 82 (394)
T TIGR00883 4 VEWFDFYLYGFAAVLVFHTF-FPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI 82 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666621 123556666665543 333445789999999999999999999999999999999
Q ss_pred HHHhhHH--------HHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhh---------
Q psy4866 152 MYSRSVL--------GLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGS--------- 214 (537)
Q Consensus 152 ~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~--------- 214 (537)
+++++++ .++++|+++|++.+...+....++.|++|+++|+++.++...+..+|.++++.++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~ 162 (394)
T TIGR00883 83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD 162 (394)
T ss_pred hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 9999875 47889999999999999999999999999999999999999999999999887653
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchH
Q psy4866 215 ---ELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFR 291 (537)
Q Consensus 215 ---~~~wr~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (537)
.++||+.|++.+++.++..+....+||+|++..+++ ++++.+.+.+
T Consensus 163 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~ 211 (394)
T TIGR00883 163 ALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE-------------------------------KHKKKRGPIR 211 (394)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh-------------------------------ccccccCCHH
Confidence 247999999888777666655566777763211100 0011123344
Q ss_pred HhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHH
Q psy4866 292 EFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFL 369 (537)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 369 (537)
+.++++.+ ...... ...+...........+.|.++++ .+.+. .......+..+..+++.++.+++.||++||+.+.
T Consensus 212 ~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 289 (394)
T TIGR00883 212 ETLTKHRK-PFLLGL-GLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLI 289 (394)
T ss_pred HHHHhchH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 45543221 122222 22222233355666778888744 44442 3445666778888999999999999999999877
Q ss_pred HhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHH-HHHHHH
Q psy4866 370 VSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVI-NILCTT 448 (537)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~ 448 (537)
....+..+..+.+.... .. ..+.+.......+.+.+.+... +...++..|.+|++.|+++.++. +....+
T Consensus 290 ~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 360 (394)
T TIGR00883 290 IFTVLAALLAVPLLMAL-LD-------SGSFTLFFFLVLGLALIGGMYT-GPMGSFLPELFPTEVRYTGASLAYNLAGAI 360 (394)
T ss_pred HHHHHHHHHHHHHHHHH-hc-------CCchHHHHHHHHHHHHHHHHHh-hhHHHHHHHhCCccceeeEeeehhHhHHHH
Confidence 55544443322111111 00 1223333344444454444433 44568999999999999999985 455667
Q ss_pred HHHHHHHHHHHHHHhhc-cchhhhHhh
Q psy4866 449 LGLISYKLFFLMDKHIG-MYSNFLFGG 474 (537)
Q Consensus 449 g~~~~~~~~g~l~~~~g-~~~~~~~~~ 474 (537)
|..++|.+.|.+.++.| +...++...
T Consensus 361 g~~~~p~~~g~l~~~~g~~~~~~~~~~ 387 (394)
T TIGR00883 361 FGGFAPYIAAALVAMTGDWYAIGYYLA 387 (394)
T ss_pred HhhHHHHHHHHHHHHcCcchhHHHHHH
Confidence 88899999999999988 554444433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=246.73 Aligned_cols=354 Identities=16% Similarity=0.227 Sum_probs=262.7
Q ss_pred CCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhHhhhhh
Q psy4866 98 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR--SVLGLYVMRTLQGFSMAAIY 175 (537)
Q Consensus 98 ~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~ 175 (537)
++++|..+.+++.+++++|+.+++++.|+++||+|.|+++..+.++.++++++..++. +++.+++.|++||++.|..+
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~ 146 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLF 146 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHH
Confidence 7889999999999999999999999999999999999999999999999999998876 45678899999999999999
Q ss_pred hhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHHHHhhc-ccCChHHHHHh
Q psy4866 176 VISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE-----LSYMNYLTYSLIIPIIFTVTFMF-MPESPYFYAIK 249 (537)
Q Consensus 176 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~-----~~wr~~~~~~~~~~~~~~~~~~~-~~esp~~l~~~ 249 (537)
|+...+.+.|.|++||++..++..++..+|.+++..+++. +||+..|++.++.+++..+++++ ..|+|.-
T Consensus 147 pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~---- 222 (466)
T KOG2532|consen 147 PAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK---- 222 (466)
T ss_pred hhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc----
Confidence 9999999999999999999999999999999988777665 59999999999999987766654 5677721
Q ss_pred CCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhc----ccccchHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy4866 250 NQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKN----VERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYAN 325 (537)
Q Consensus 250 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (537)
.+ .-.++|.+.+++...++ +.+.+++++++.+. ++...+..++...++..+..|+|
T Consensus 223 ------------h~----~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~----vwai~~~~f~~~~~~~~l~~y~P 282 (466)
T KOG2532|consen 223 ------------HP----NISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPP----VWAIWISAFGGNWGFYLLLTYLP 282 (466)
T ss_pred ------------CC----CCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHH----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 00 01112222222221111 13678898888655 55566666667777889999999
Q ss_pred HHHHhc-CCC-CChhHHHHHHHHHHHHHhhhHhhhhcccCCc---------HHHHHhhHHHHHHHHHHHHHHHhhhcccc
Q psy4866 326 TIFASS-ETF-LPSDYISILFAIILLVSIFPSTYYIDRAGRR---------VLFLVSSAGCSLFSFIAGLYYYVTIELQY 394 (537)
Q Consensus 326 ~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (537)
.|+++. +++ .+.++...+..+...+..+++|.++||+.+| ..-.++....++.++.+.+..
T Consensus 283 tY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~-------- 354 (466)
T KOG2532|consen 283 TYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTS-------- 354 (466)
T ss_pred HHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecC--------
Confidence 999876 444 3566888889999999999999999998652 222344444444444444321
Q ss_pred CCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH---hhccchhhh
Q psy4866 395 EIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK---HIGMYSNFL 471 (537)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~---~~g~~~~~~ 471 (537)
....+..++.+.+.....+ .....+........+++.+..+|+.+.+..+.++++|.+.|.+.. ...|+..|+
T Consensus 355 --~~~~~~a~~~l~~~~~~~g--~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~ 430 (466)
T KOG2532|consen 355 --DEHRLLAVILLTIAIGLSG--FNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFL 430 (466)
T ss_pred --CCcchHHHHHHHHHHHHcc--cchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHH
Confidence 1122233333332222222 222222222222155778999999999999999999999999983 347888999
Q ss_pred HhhHHHHHHHHHHHhh
Q psy4866 472 FGGVSSLVCTVYLYYF 487 (537)
Q Consensus 472 ~~~~~~~~~~~~~~~~ 487 (537)
+.+++.+++.++..++
T Consensus 431 i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 431 IAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHhchheeEe
Confidence 9999988888665444
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-30 Score=249.06 Aligned_cols=341 Identities=18% Similarity=0.231 Sum_probs=246.5
Q ss_pred HHhhhhhhhhhccchhhHH-hhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHH
Q psy4866 72 CIAAFTTGMSFAWSAPVLE-ELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWII 150 (537)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~ 150 (537)
+++.+...+......+.+| .+.+ ++|.|..+++++.+++.++..+++++.|+++||+|||+++.++.++.+++.++
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~ 78 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAE---ELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLL 78 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHC---CSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHH
Confidence 3456667777778889999 8888 99999999999999999999999999999999999999999999999999777
Q ss_pred HHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh----hHHHHHHHHH
Q psy4866 151 AMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL----SYMNYLTYSL 226 (537)
Q Consensus 151 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~----~wr~~~~~~~ 226 (537)
..+++|++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|.++++.+++.+ +||+.|++.+
T Consensus 79 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~ 158 (352)
T PF07690_consen 79 LAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISA 158 (352)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHH
T ss_pred hhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccccccc
Confidence 777788889999999999999999999999999999999999999999999999999999998763 7999999999
Q ss_pred HHHHHHHHH-hhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhccccc-chHHhhccchHHHHHH
Q psy4866 227 IIPIIFTVT-FMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERT-NFREFMGRSNMKAFVF 304 (537)
Q Consensus 227 ~~~~~~~~~-~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 304 (537)
++.++..++ .++++++|+....+.+ . ++. .+.++... .++.+.+++..+..++
T Consensus 159 ~~~~~~~il~~~~~~~~~~~~~~~~~--------------~-~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (352)
T PF07690_consen 159 ILSLIAAILFILFLPEPPPPRERESP--------------K-ESE----------SKKPKPLKPGFKSLFKNPVLWILLI 213 (352)
T ss_dssp HHHHHHHHHHHCCC---STTTT--SS--------------T-TTT------------HHHCCCH-CTHHHHHHCCHHHHH
T ss_pred chhhhhhhhHhhhhhhcccccccccc--------------c-ccc----------cccccccccccccccccchhhhhhh
Confidence 998876653 3445444311000000 0 000 00000011 2344444333332222
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHH-HHhcCCC--CChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHH
Q psy4866 305 MAFLAVFRAFTGVQSIIAYANTI-FASSETF--LPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFI 381 (537)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 381 (537)
...+.. ........+.|.+ .+..+.+ ........+..+..+++.++.+++.||+++++..........+..+.
T Consensus 214 ~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 289 (352)
T PF07690_consen 214 AFFLFF----FVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALG 289 (352)
T ss_dssp HHHHHH----HHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhHHH----HHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 222222 2244567777876 3444554 13335567778888888999999999999988777766666665555
Q ss_pred HHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHH
Q psy4866 382 AGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISY 454 (537)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 454 (537)
+...... .+....+....+.+.+.+.. .+....+..+..|++++|++.|+.+...+++..++|
T Consensus 290 ~~~~~~~---------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 290 LLLLPFS---------SSPVWLIIALFLIGFGFGIV-FPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HCCSHHH---------CHHHHHHHHHHHHHHHHHHH-CHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh---------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 5433211 12334444555566655554 455669999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-29 Score=243.92 Aligned_cols=364 Identities=13% Similarity=0.049 Sum_probs=244.1
Q ss_pred HhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy4866 73 IAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAM 152 (537)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~ 152 (537)
++.++..+.........+.+.+ +++.+..+.+++.+++.+++.++.+++|+++||+|||++++++.++.++++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~ 86 (393)
T PRK11195 10 AAQFFSALADNALLFAAIALLK---ELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML 86 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH
Confidence 3344444433334455556667 8899999999999999999999999999999999999999999999999998888
Q ss_pred HHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHH
Q psy4866 153 YSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL---SYMNYLTYSLIIP 229 (537)
Q Consensus 153 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~---~wr~~~~~~~~~~ 229 (537)
++.+. ++.|+++|++.+...|...+++.|++|+++|++++++.+....+|.++||.+++.+ .|+..+.+.+...
T Consensus 87 ~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~ 163 (393)
T PRK11195 87 FGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIY 163 (393)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87764 68899999999999999999999999999999999999999999999999998764 4555565555444
Q ss_pred HHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHHHH
Q psy4866 230 IIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLA 309 (537)
Q Consensus 230 ~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (537)
++..+..+.+||+|... +++. .+.....++. +...+.+++++..+...+...+.
T Consensus 164 ~~~~~~~~~l~~~~~~~--~~~~---------------~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~~~~~ 217 (393)
T PRK11195 164 LLAALFNLFIPRLGARR--PGQS---------------WNPIALLRDF---------FHACRVLWRDKLGRFSLAGTTLF 217 (393)
T ss_pred HHHHHHHhcCCCCcccc--cccC---------------CCHHHHHHHH---------HHHHHHHHhCchhHHHHHHHHHH
Confidence 44445556778775210 0000 0000000000 01123444444433333322222
Q ss_pred HHHHhhhHHHHHHHHHHHHHhc-CCC-CChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHH
Q psy4866 310 VFRAFTGVQSIIAYANTIFASS-ETF-LPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYY 387 (537)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (537)
... .....+..+.++++. +.+ ...+......+++.+++.++.+++.||.++++.+..+. +.++..+.+...
T Consensus 218 ~~~----~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~-- 290 (393)
T PRK11195 218 WGA----GATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQ-- 290 (393)
T ss_pred HHH----HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHH--
Confidence 221 122223334444332 333 24456777788899999999999999998888776664 333332222221
Q ss_pred hhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy4866 388 VTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNM-KAVSCAVINILCTTLGLISYKLFFLMDKHIGM 466 (537)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 466 (537)
++.+......++.+.+.+....+. .+...+..|++. +|++.++.+...+++..++..+.+.+ +..|.
T Consensus 291 ----------~~~~~~~~~~~~~G~~~g~~~~~~-~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~ 358 (393)
T PRK11195 291 ----------HSLLPAYPLLILIGALGGFFVVPM-NALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGV 358 (393)
T ss_pred ----------hHHHHHHHHHHHHHHhhhhhhhhH-HHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCC
Confidence 123333444445555555544443 466677655554 69999999999999999999998855 67788
Q ss_pred chhhhHhhHHHHHHHHHHHhh
Q psy4866 467 YSNFLFGGVSSLVCTVYLYYF 487 (537)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~ 487 (537)
...+.+.+...+++..+.+.+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK11195 359 PVVAVIVGFGLLVALAMALLW 379 (393)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 877777666666665555444
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=240.05 Aligned_cols=351 Identities=11% Similarity=0.072 Sum_probs=240.7
Q ss_pred hhhhhccchhhHHh-hhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q psy4866 78 TGMSFAWSAPVLEE-LLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRS 156 (537)
Q Consensus 78 ~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~ 156 (537)
.........|.++. +.+ ++|.|..++|++.+.+.++..+..+++|+++||+|||+++.++.++.+++.+++.++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~---~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~ 98 (400)
T PRK11646 22 VVLGFFVVFPLISIRFVD---QLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHE 98 (400)
T ss_pred HHHHHHHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344445666654 456 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH
Q psy4866 157 VLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE---LSYMNYLTYSLIIPIIFT 233 (537)
Q Consensus 157 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~---~~wr~~~~~~~~~~~~~~ 233 (537)
++.+++.|+++|++.+...+...+++.|++|+++|++++++......+|..+||.+++. .+||+.|++.++..++..
T Consensus 99 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~ 178 (400)
T PRK11646 99 PWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAA 178 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999998889999999999999999999999999999999999888876 489999999887766544
Q ss_pred H-HhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHHHHHHH
Q psy4866 234 V-TFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFR 312 (537)
Q Consensus 234 ~-~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (537)
+ ..+++||.+. . .. . ++.+..+++.++++......+.......
T Consensus 179 i~~~~~~~~~~~-----~--------------~~--~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 222 (400)
T PRK11646 179 AFNAWLLPAYKL-----S--------------TV--R--------------TPVREGMTRVLRDKRFVTYVLTLTGYYM- 222 (400)
T ss_pred HHHHHhCCcccc-----c--------------cc--c--------------hhhHHHHHHHHcCchHHHHHHHHHHHHH-
Confidence 3 3344554210 0 00 0 0001123444443333222222211111
Q ss_pred HhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhh-cccCCcHHHHHhhHHHHHHHHHHHHHHHhhh
Q psy4866 313 AFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYI-DRAGRRVLFLVSSAGCSLFSFIAGLYYYVTI 390 (537)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (537)
.......+.|.++++.+... ..+....+.++....+....+++. ||.+.++.+..+.++.+++.+++...
T Consensus 223 ---~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~----- 294 (400)
T PRK11646 223 ---LAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV----- 294 (400)
T ss_pred ---HHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-----
Confidence 12223456788777765542 233444444554544444445555 45666666666666666665544432
Q ss_pred ccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc----c
Q psy4866 391 ELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG----M 466 (537)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g----~ 466 (537)
++.+...+...+++.+.... .|...++..+..|++.||+++|+.+....+|..++|.+.|.+.|..+ .
T Consensus 295 -------~~~~~~~~~~~l~~~g~~~~-~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~ 366 (400)
T PRK11646 295 -------SNLQQLFTLICLFYIGSIIA-EPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQP 366 (400)
T ss_pred -------hhHHHHHHHHHHHHHHHHHH-HccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCc
Confidence 12233333334444444333 34455888899999999999999999999999999999999998753 2
Q ss_pred chhhhHhhHHHHHHHHH
Q psy4866 467 YSNFLFGGVSSLVCTVY 483 (537)
Q Consensus 467 ~~~~~~~~~~~~~~~~~ 483 (537)
...+.+.+++++++.+.
T Consensus 367 ~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 367 ELPWMMLGIIGLITLLA 383 (400)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 33444444444444433
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=246.23 Aligned_cols=381 Identities=13% Similarity=0.116 Sum_probs=257.8
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhh----
Q psy4866 56 YLHTVLFLFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI---- 131 (537)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~---- 131 (537)
|.++..++++...+.+ .+..|+......+.+|...+ +.|.|..+++.+ +.....+ ++.+++|+++||+
T Consensus 5 ~l~~~~~~~~~~~~~l---~~~~gl~~~~~~~~l~~~l~---~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~ 76 (491)
T PRK11010 5 YLRIFQQPNSAILLIL---GFASGLPLALTSGTLQAWMT---VENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPF 76 (491)
T ss_pred HHHHHcccHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---hCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccC
Confidence 3445555555554444 44567777788889999998 889999999987 4444444 6899999999999
Q ss_pred -hhhHH-HHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHH
Q psy4866 132 -GRKWS-LLMTGPITTASWIIAMYS---RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGI 206 (537)
Q Consensus 132 -Grr~~-l~~~~~l~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 206 (537)
|||+. ++++.++.+++.+++++. ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.
T Consensus 77 ~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~ 156 (491)
T PRK11010 77 LGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAM 156 (491)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHH
Confidence 98875 667777777777777775 4788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhh-----hhHHHHHHHHHHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhh
Q psy4866 207 LYTYVLGSE-----LSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNT 281 (537)
Q Consensus 207 ~i~~~l~~~-----~~wr~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (537)
++++.++.. .+||..|++.+++.++..+..+++||+++.. .+ + +..+
T Consensus 157 llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~--------------~-~~~~---------- 208 (491)
T PRK11010 157 LVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI---PV--------------P-KTLE---------- 208 (491)
T ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cc--------------c-cchh----------
Confidence 988766543 4899999999988777666666678865210 00 0 0000
Q ss_pred hhcccccchHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HhcCCCC-ChhHHH-HHHHHHHHHHhhhHhhh
Q psy4866 282 SKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIF-ASSETFL-PSDYIS-ILFAIILLVSIFPSTYY 358 (537)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~-~~~~~~~~~~~~~~g~l 358 (537)
+....++++.++++..+.......+.... ......+.+.++ +..|.+. +.+... ....++.+++.+++|++
T Consensus 209 --~~~~~~l~~~~~~~~~~~~ll~~~l~~~~----~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L 282 (491)
T PRK11010 209 --QAVVAPLRDFFGRNNAWLILLLIVLYKLG----DAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGIL 282 (491)
T ss_pred --hhHHHHHHHHHcCcCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00012344555544333333222222211 223334445554 4456553 233443 34457889999999999
Q ss_pred hcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchh
Q psy4866 359 IDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVS 438 (537)
Q Consensus 359 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 438 (537)
+||+++|+.+..+.++.++..+.+...... ..+.+......++.....+.+... .+++..+..+++.+++.
T Consensus 283 ~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~--------~~~~~~l~~~~~l~~~~~g~~~~~-~~a~~~~l~~~~~~~t~ 353 (491)
T PRK11010 283 MQRLSLFRALMIFGILQGVSNAGYWLLSIT--------DKNLYSMGAAVFFENLCGGMGTAA-FVALLMTLCNKSFSATQ 353 (491)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhc--------cccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCCcHHH
Confidence 999999888776665555444333221110 111222222223322222333322 35778888899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhHHHHHHHHHHHhh
Q psy4866 439 CAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYF 487 (537)
Q Consensus 439 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 487 (537)
.|+.+....+|..+++.+.|.+.|..||...|.+.+++++++.+.....
T Consensus 354 ~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 354 FALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888888888887776665443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=241.19 Aligned_cols=343 Identities=14% Similarity=0.134 Sum_probs=235.0
Q ss_pred hhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy4866 75 AFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS 154 (537)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~ 154 (537)
.+..........+.+|.+.+ ++|.|..+.+++.+.+.++..+++++.|+++||+|||++++++.++..++.+++.++
T Consensus 12 ~~~~~~~~~~~~~~lp~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~ 88 (392)
T PRK10473 12 VLLYPAGIDMYLVGLPRIAA---DLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA 88 (392)
T ss_pred HHHHHHHHHHHhhhHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh
Confidence 33444455556688999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHH
Q psy4866 155 RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPI 230 (537)
Q Consensus 155 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~~~ 230 (537)
++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.+....+|..++|.++.. .+||+.|++.++..+
T Consensus 89 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~ 168 (392)
T PRK10473 89 ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGI 168 (392)
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998888888765 489999999888776
Q ss_pred HHHH-HhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHHHH
Q psy4866 231 IFTV-TFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLA 309 (537)
Q Consensus 231 ~~~~-~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (537)
+..+ ..+++||++.. + + +++ ... ....++.++++..+...+...+.
T Consensus 169 i~~~~~~~~~~~~~~~---~-~------------~~~-~~~----------------~~~~~~~~~~~~~~~~~~~~~~~ 215 (392)
T PRK10473 169 LVLLLSLFILKETRPA---R-A------------PAA-SSK----------------PRENSESLLNRFFLSRLVITTLS 215 (392)
T ss_pred HHHHHHHHHcCCCCCc---c-c------------CCc-cch----------------HHHHHHHHhCHHHHHHHHHHHHH
Confidence 6443 34556776310 0 0 000 000 00112233333222222222211
Q ss_pred HHHHhhhHHHHHHHHHHHHHh-cCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHH
Q psy4866 310 VFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYY 387 (537)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (537)
... ......+.|.++.+ .+.+. ..+......+++.+++.++.+++.||+++|+.+..+..+..++.+.+....
T Consensus 216 ~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~- 290 (392)
T PRK10473 216 VTV----ILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP- 290 (392)
T ss_pred HHH----HHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 111 22233444555543 35542 234566677888899999999999999999998888877776666555431
Q ss_pred hhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy4866 388 VTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMY 467 (537)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 467 (537)
..+.......+...+.+.++.. ....+..|.+.|+ |.......++..+++.+.+.+.+..|+.
T Consensus 291 -----------~~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~ 353 (392)
T PRK10473 291 -----------SHAVSLFGITLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGIS 353 (392)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1122233333333333333322 2334444544443 4444555677778888888888888876
Q ss_pred hhhhHhhH
Q psy4866 468 SNFLFGGV 475 (537)
Q Consensus 468 ~~~~~~~~ 475 (537)
....+.+.
T Consensus 354 ~~~~~~~~ 361 (392)
T PRK10473 354 AWNMLIGI 361 (392)
T ss_pred hhHHHHHH
Confidence 44444433
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=241.45 Aligned_cols=358 Identities=12% Similarity=0.053 Sum_probs=247.1
Q ss_pred hhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy4866 74 AAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMY 153 (537)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~ 153 (537)
..++.....+...+.+|.+.++ ++|++..++|++.+++.++..+++++.|+++||+|||++++++.++.+++.++.++
T Consensus 15 ~~~~~~~g~~~~~~~l~~~l~~--~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~ 92 (395)
T PRK10054 15 SSLLLTIGRGATLPFMTIYLSR--QYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPL 92 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHH
Confidence 3444455666667777655432 79999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHH
Q psy4866 154 SRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL---SYMNYLTYSLIIPI 230 (537)
Q Consensus 154 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~---~wr~~~~~~~~~~~ 230 (537)
+++++.+++.|++.|.+.+...+...++..|.+|+++|++++++.....++|.+++|.+++.+ +|+..|++.++..+
T Consensus 93 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~ 172 (395)
T PRK10054 93 VNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSA 172 (395)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 999999999999999888888888999999999999999999999999999999999888764 89999998887776
Q ss_pred HHHHH-hhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHHHH
Q psy4866 231 IFTVT-FMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLA 309 (537)
Q Consensus 231 ~~~~~-~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (537)
+..+. .+++||+++ +++ + +. ++ ....++.++++..+...+..++.
T Consensus 173 i~~i~~~~~~~~~~~----~~~--------------~--~~-------~~-------~~~~~~~~~~~~~~~~~~~~~l~ 218 (395)
T PRK10054 173 FPLVFIQIWVQRSEK----AIA--------------T--ET-------GS-------VWSPSVLLQDKALLWFTCSGFLA 218 (395)
T ss_pred HHHHHHHHHHhcccc----ccc--------------c--ch-------hh-------hhhhhhhccCceehHHHHHHHHH
Confidence 65433 344554420 000 0 00 00 00113444444433333333322
Q ss_pred HHHHhhhHHHHHHHHHHHHHh---cCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHH
Q psy4866 310 VFRAFTGVQSIIAYANTIFAS---SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLY 385 (537)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (537)
.+. ......+.+.+... .+.+. ..+.......+.........+++.||.++|+.+..+..+..++...+...
T Consensus 219 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 294 (395)
T PRK10054 219 SFV----SGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS 294 (395)
T ss_pred HHH----HHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc
Confidence 222 11222233333322 22211 11233344445555666778899999999998888877776666555431
Q ss_pred HHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4866 386 YYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG 465 (537)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 465 (537)
.++.+...+...+++.+... ..|.....+.+..|++.++++.+..+ ...+|.+++|.+.|.+.|+.|
T Consensus 295 -----------~~~~~~~~~~~~~~~~g~~~-~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g 361 (395)
T PRK10054 295 -----------GNSLLLWGMSAAVFTVGEII-YAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLP 361 (395)
T ss_pred -----------chHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcC
Confidence 11223333444445554433 33455577888899999999988655 677999999999999999999
Q ss_pred cchhhhHhhHHHHHHHHHH
Q psy4866 466 MYSNFLFGGVSSLVCTVYL 484 (537)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~ 484 (537)
+...+++.+++..+..++.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~ 380 (395)
T PRK10054 362 PWSLFVILALAIVAAWLLM 380 (395)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 8877776655555554443
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-29 Score=242.46 Aligned_cols=287 Identities=18% Similarity=0.245 Sum_probs=210.3
Q ss_pred HHHHHHHHHhhhhhhhhhc-cchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHH
Q psy4866 65 SFLCVTACIAAFTTGMSFA-WSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPI 143 (537)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l 143 (537)
+.++..++...+....+-. ...+.+..+.+ |.++...+.+.+.++++++++++.+++|.|.||++..+.+....++
T Consensus 44 l~i~~~~~~~y~~~~~d~~si~~a~l~g~~e---dl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~ 120 (495)
T KOG2533|consen 44 LFILPFLCYLYFHAYLDKSSIVNASLSGLKE---DLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGIL 120 (495)
T ss_pred HHHHHHHHHHHHHHhcchhcchhHHHcCCcc---ccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHH
Confidence 3444444444444444333 22333334445 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh--------
Q psy4866 144 TTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE-------- 215 (537)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~-------- 215 (537)
+++..++....+|++.+++.|++.|+.++..+|....+++.|+.+++|++.++++.++.++|.++|++++..
T Consensus 121 w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~ 200 (495)
T KOG2533|consen 121 WGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSG 200 (495)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCC
Confidence 999888888899999999999999999999999999999999999999999999999999999999988866
Q ss_pred --hhHHHHHHHHHHHHHHHH-HHhhcccCChH--HHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhc----cc
Q psy4866 216 --LSYMNYLTYSLIIPIIFT-VTFMFMPESPY--FYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKN----VE 286 (537)
Q Consensus 216 --~~wr~~~~~~~~~~~~~~-~~~~~~~esp~--~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 286 (537)
.||||.|++.+++.++.. +.++++|+.|. |...+.+.+-+ .++.++..... .+
T Consensus 201 ~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~------------------~~~~~~~~~~~~~~~~~ 262 (495)
T KOG2533|consen 201 GLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELV------------------VERLRESPSGGIENKFK 262 (495)
T ss_pred CcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHH------------------HHHHHhccCCCcccccC
Confidence 289999999999987755 55667899984 11111100000 01111111111 22
Q ss_pred ccchHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCC-CChhHHHHHHHHHHHHHhhhHhhhhccc--
Q psy4866 287 RTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETF-LPSDYISILFAIILLVSIFPSTYYIDRA-- 362 (537)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~-- 362 (537)
+..+++.++.+. ++...+..++.....+.+.+|+|.++.+ .+++ .++..+.++..++++++.+++|+++||.
T Consensus 263 ~~~~~~a~~dp~----vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~ 338 (495)
T KOG2533|consen 263 WKGFKEALKDPG----VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKT 338 (495)
T ss_pred HHHHHHHHhchh----HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhh
Confidence 345555565555 4444455555555577889999999988 3344 2455788889999999999999999994
Q ss_pred --CCcHHHHHhhHHHH
Q psy4866 363 --GRRVLFLVSSAGCS 376 (537)
Q Consensus 363 --~~~~~~~~~~~~~~ 376 (537)
.+|........+..
T Consensus 339 ~~~~~~~~~~~~~~~~ 354 (495)
T KOG2533|consen 339 IFARRLLFIVFLCLYA 354 (495)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 44444444444333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-28 Score=235.91 Aligned_cols=331 Identities=12% Similarity=0.172 Sum_probs=228.4
Q ss_pred hhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy4866 80 MSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLG 159 (537)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~ 159 (537)
+......|.+|.+.+ ++|++..+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.++++++.
T Consensus 5 ~~~~~~~p~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 81 (377)
T PRK11102 5 LAIDMYLPALPVIAA---DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQ 81 (377)
T ss_pred hHHHHHhccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 345567799999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHH-H
Q psy4866 160 LYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFT-V 234 (537)
Q Consensus 160 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~~~~~~-~ 234 (537)
+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++. .+||+.|++.+++.++.. +
T Consensus 82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 161 (377)
T PRK11102 82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAAL 161 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888755 489999998888776654 4
Q ss_pred HhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHHHHHHHHh
Q psy4866 235 TFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAF 314 (537)
Q Consensus 235 ~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (537)
..+++||+++. .+ +++.+.++ ...++++.++++..+...+. .+..+
T Consensus 162 ~~~~~~~~~~~----~~-------------~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~----~~~~~ 207 (377)
T PRK11102 162 VFFFIPETLPK----ER-------------RQPFHLRT-------------TIRNFASLFRHKRVLGYMLA----SGFSF 207 (377)
T ss_pred HHHhCCccCcc----cc-------------cCCCChHH-------------HHHHHHHHHcChHHHHHHHH----HHHHH
Confidence 44567765410 00 00000000 01122344443332222222 22222
Q ss_pred hhHHHHHHHHHHHHHh-cCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhcc
Q psy4866 315 TGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIEL 392 (537)
Q Consensus 315 ~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (537)
.+......+.|.++.+ .+.+. +.+....+..++.+++.++.+++.||+++|+.+..+..+..+..+.+......
T Consensus 208 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~---- 283 (377)
T PRK11102 208 AGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL---- 283 (377)
T ss_pred HHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 2233444455555544 45542 34466677788899999999999999999998888776554433333221110
Q ss_pred ccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHH-HHHHHHHHHH
Q psy4866 393 QYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCT-TLGLISYKLF 457 (537)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~~~ 457 (537)
+...+...+...++..+.+... +.......|..| +.++++.++.+.... +|..+++.+.
T Consensus 284 ----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~ 343 (377)
T PRK11102 284 ----DLGFWALVVGVAAFVGCVSMIS-SNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLS 343 (377)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHhh-HHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122222233333333333222 223356677766 678999998877653 4555555543
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=231.24 Aligned_cols=334 Identities=14% Similarity=0.070 Sum_probs=235.1
Q ss_pred hhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q psy4866 76 FTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR 155 (537)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~ 155 (537)
+.+.-......+.+|.+.+ ++|+|.++.+++.+++.++..++.++.|+++||+|||+++.++.++..++.+.+ .++
T Consensus 10 ~~~~~~~~~~~~~lp~l~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~ 85 (355)
T TIGR00896 10 LNLRPALTSVGPLLPQIRS---ALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAP 85 (355)
T ss_pred hcccCccccCcccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhc
Confidence 3333344567899999999 999999999999999999999999999999999999999999999988888877 788
Q ss_pred hHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHH
Q psy4866 156 SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL------SYMNYLTYSLIIP 229 (537)
Q Consensus 156 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~------~wr~~~~~~~~~~ 229 (537)
+++.+++.|++.|++.+...+....++.|++| ++|++++++...+.++|..+++.++..+ +||+.|.+.++..
T Consensus 86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~ 164 (355)
T TIGR00896 86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPA 164 (355)
T ss_pred cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 99999999999999999988888889999986 5899999999999999988887776442 3998888766554
Q ss_pred HHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHHHH
Q psy4866 230 IIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLA 309 (537)
Q Consensus 230 ~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (537)
++..+ .++|+.++ +. + .+++..+...++.++++..+...+...
T Consensus 165 ~~~~~--~~~~~~~~------~~-------------~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 207 (355)
T TIGR00896 165 LLALL--AWIPQVRR------RV-------------A--------------ANQTTTRLTPVRIWRSPLAWQVTVFFG-- 207 (355)
T ss_pred HHHHH--HHhhhhcc------cc-------------C--------------CCCCCCCCCCchhhcCHhHHHHHHHHH--
Confidence 43322 23343310 00 0 000000122334454443333222222
Q ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhccc-CCcHHHHHhhHHHHHHHHHHHHHHH
Q psy4866 310 VFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRA-GRRVLFLVSSAGCSLFSFIAGLYYY 387 (537)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (537)
.....+.....|+|.++++.+.+. ..+....+..++.++++++.|++.||+ +||+.+..+..+.+++.+.+.+..
T Consensus 208 --~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~- 284 (355)
T TIGR00896 208 --LQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP- 284 (355)
T ss_pred --HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh-
Confidence 222234556678898888776653 345677778899999999999999999 456666666666666655444321
Q ss_pred hhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhcccc-CCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy4866 388 VTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEY-FSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGM 466 (537)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 466 (537)
..... ....+++.+.+... +...+...+. .+++.++...++.+...+++.+++|.+.|.+.|+.|.
T Consensus 285 -----------~~~~~-~~~~l~g~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~ 351 (355)
T TIGR00896 285 -----------MHGLW-AWALVLGLGQGGAF-PLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN 351 (355)
T ss_pred -----------hhHHH-HHHHHHHHhhhhHh-HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11111 12344455443333 3333444433 3456678999999999999999999999999998874
Q ss_pred c
Q psy4866 467 Y 467 (537)
Q Consensus 467 ~ 467 (537)
+
T Consensus 352 ~ 352 (355)
T TIGR00896 352 W 352 (355)
T ss_pred c
Confidence 3
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-27 Score=230.40 Aligned_cols=334 Identities=15% Similarity=0.166 Sum_probs=229.7
Q ss_pred hhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhH
Q psy4866 78 TGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSV 157 (537)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~ 157 (537)
..+......|.+|.+.+ ++|.|+.+.+++.+++.++..++++++|+++||+|||++++++.++..++.+++.+++++
T Consensus 20 ~~~~~~~~~p~~~~i~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~ 96 (394)
T PRK11652 20 GQMAQTIYVPAIADMAR---DLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSL 96 (394)
T ss_pred HHHHHHHHhccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccH
Confidence 33455667788999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHH
Q psy4866 158 LGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFT 233 (537)
Q Consensus 158 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~~~~~~ 233 (537)
+.+++.|++.|++.+...+....+..|.+++++|+++.++...+..+|..++|.+++. .+||+.|++.++..++..
T Consensus 97 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~ 176 (394)
T PRK11652 97 TVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVT 176 (394)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 9999999999999988888888899999999999999999999999988888887755 489999999887765543
Q ss_pred -HHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHHHHHHH
Q psy4866 234 -VTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFR 312 (537)
Q Consensus 234 -~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (537)
+..+++||+++.. +.+.+ .+..+++.++++..+...+......
T Consensus 177 ~~~~~~~~~~~~~~----------------------~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-- 220 (394)
T PRK11652 177 FSMARWMPETRPAD----------------------ARRTR------------VLASYRTLLSNRRFNCYLLMLIGTL-- 220 (394)
T ss_pred HHHHHhCCccCccc----------------------cchhH------------HHHHHHHHHcChHHHHHHHHHHHHH--
Confidence 4445677764110 00000 0122334444443333232222211
Q ss_pred HhhhHHHHHHHHHHHHHh-cCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhh
Q psy4866 313 AFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTI 390 (537)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (537)
.+...+..+.+.++++ .+.+. ..+.......++.+++.++.+++.||.+++... ......++.+.+.......
T Consensus 221 --~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~- 295 (394)
T PRK11652 221 --AGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPGWFG- 295 (394)
T ss_pred --HHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhc-
Confidence 2233334445556655 34432 223444555667777888888888888732222 2222222222211110000
Q ss_pred ccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4866 391 ELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKH 463 (537)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 463 (537)
....+.......+.+.+.+... +....+..|..| +++|++.++.+....+|+++++.+.+.+...
T Consensus 296 ------~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 296 ------VMNVWTLLVPAALFFFGAGMLF-PLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred ------cccHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 1122334444455555555433 445577778877 4689999999999999999999988877554
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=227.45 Aligned_cols=352 Identities=13% Similarity=0.095 Sum_probs=225.0
Q ss_pred hhhhhhhhccchhhHHhh-hcCCCCCCCCCChhhHHHHHHHH-HHhhhhhhhHHhhhhhhhhHHH-HHHHHHHHHHHHHH
Q psy4866 75 AFTTGMSFAWSAPVLEEL-LSKESPIPMSPNEGSWVVAIIEI-GNYLSPIPAGMLVNRIGRKWSL-LMTGPITTASWIIA 151 (537)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~s~~~~-~~~~~~~~~G~l~dr~Grr~~l-~~~~~l~~~~~~~~ 151 (537)
.++.++......|.+|.+ .+ ++|.|.+++|++.+.+.+ +..++.+++|+ +||+||||.+ ..+.++.+++..+.
T Consensus 24 ~~~~~~~~~~~~p~~~~~l~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~ 99 (393)
T PRK15011 24 AFLTGIAGALQTPTLSIFLTD---EVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLF 99 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHH
Confidence 444555666667777664 55 899999999999876655 66666666666 9999998875 45666667788888
Q ss_pred HHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCccc--chhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHH
Q psy4866 152 MYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIR--GTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYS 225 (537)
Q Consensus 152 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~ 225 (537)
+++++++.+++.+.+.|...+...+...+++.|+.++++| +...++.+.+.++|.+++|.+++. +|||..|++.
T Consensus 100 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~ 179 (393)
T PRK15011 100 AWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSA 179 (393)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHH
Confidence 8999999887666555545567788888888888876655 345577888888888888888855 5999999998
Q ss_pred HHHHHHHHH-HhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHH
Q psy4866 226 LIIPIIFTV-TFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVF 304 (537)
Q Consensus 226 ~~~~~~~~~-~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (537)
++..++..+ .++++||.|+- + + + . . . + ....++ +++.......
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~---~-~--~-----------~--~----------~-~----~~~~~~--~~~~~~~~~~ 223 (393)
T PRK15011 180 AVAFIVCGVMVWLFLPSMRKE---L-P--L-----------A--T----------G-T----LEAPRR--NRRDTLLLFV 223 (393)
T ss_pred HHHHHHHHHHHHhhcCccCCC---C-c--c-----------c--c----------c-c----cccccc--ccccHHHHHH
Confidence 887766544 44557776410 0 0 0 0 0 0 0 000000 0111111111
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh-cCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHH
Q psy4866 305 MAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIA 382 (537)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 382 (537)
...+ .+........+.|.++++ .+.+. ..+.......++.+++.++.|+++||+++|+.+..+.....+....+
T Consensus 224 ~~~~----~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~ 299 (393)
T PRK15011 224 ICTL----MWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGM 299 (393)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 1111 112233445567777754 34442 23344445556778889999999999999988776655444433222
Q ss_pred HHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4866 383 GLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 462 (537)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 462 (537)
... .+.+..+....+.+...+... +....+..|..|+ .++++.++.+...++|..++|.+.|.+.+
T Consensus 300 ~~~------------~~~~~~l~~~~l~~~~~g~~~-~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~ 365 (393)
T PRK15011 300 LMA------------HSPAILLGLQLLNAIYIGILG-GIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAE 365 (393)
T ss_pred HHH------------hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 122222222222223322222 2233667788886 48999999999999999999999999999
Q ss_pred hhccchhhhHhhHHHHHHHHHH
Q psy4866 463 HIGMYSNFLFGGVSSLVCTVYL 484 (537)
Q Consensus 463 ~~g~~~~~~~~~~~~~~~~~~~ 484 (537)
..|+...+.+.+++.+++.++.
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~~ 387 (393)
T PRK15011 366 IWNYHAVFWFALVMIIATLFCL 387 (393)
T ss_pred HhhhHHHHHHHHHHHHHHHHHH
Confidence 9899888877777776665554
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-27 Score=229.22 Aligned_cols=355 Identities=11% Similarity=0.041 Sum_probs=254.5
Q ss_pred HHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHH----HHHHHHHHHH
Q psy4866 72 CIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSL----LMTGPITTAS 147 (537)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l----~~~~~l~~~~ 147 (537)
.+..+...+..+...|.+|.+.+ ++|.|..++|++.+++.+...++++++|+++||+|||... .++..+..+
T Consensus 10 ~~~~~~~~~~~~~~~p~l~~~l~---~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~- 85 (382)
T TIGR00902 10 ALGFFGYFCAYGIFLPFFPAWLK---GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA- 85 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-
Confidence 34455566677889999999999 9999999999999999999999999999999999985433 333222222
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHH
Q psy4866 148 WIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLT 223 (537)
Q Consensus 148 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~ 223 (537)
.++..+++++.+++.|+++|.+.+...|...++..++ +++|+++.+....+.++|.+++|.+++. +|||..|+
T Consensus 86 -~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~ 162 (382)
T TIGR00902 86 -AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILA 162 (382)
T ss_pred -HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence 3445678999999999999999888889888887665 4678999999999999999999887765 49999998
Q ss_pred HHHHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHH
Q psy4866 224 YSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFV 303 (537)
Q Consensus 224 ~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (537)
+.++..++..+. +.++|+++ +++ ++ + .++.+.....++++|++..+...
T Consensus 163 ~~~~~~~~~~~~-~~~~~~~~----~~~-------------~~--~-----------~~~~~~~~~~~~~l~~~~~~~~l 211 (382)
T TIGR00902 163 ILTAGLAFMLIG-FLIKPTIP----PKD-------------AI--P-----------EDESQGDSAFIALLKNPMNLRFL 211 (382)
T ss_pred HHHHHHHHHHHH-HHcCCCCC----CCc-------------cc--c-----------ccccccchhHHHHHcChHHHHHH
Confidence 876553333333 33333310 000 00 0 00000122345666655544444
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHH
Q psy4866 304 FMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIA 382 (537)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 382 (537)
+..++.. ........+.|.++++.|.+. ..+....+..+..+++.++.+++.||++.|+.+.++.+...+....+
T Consensus 212 ~~~~l~~----~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~ 287 (382)
T TIGR00902 212 AAVCLIQ----GAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAII 287 (382)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 3333322 234556667788888777653 34455666778888899999999999999999999988888887766
Q ss_pred HHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHH-HHHHHHHHHHHHHHHHH
Q psy4866 383 GLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINI-LCTTLGLISYKLFFLMD 461 (537)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~-~~~~g~~~~~~~~g~l~ 461 (537)
... ++.+..+....+.+..++..... ...++.+. |++.++++.++.+. ...+|.++++.+.|++.
T Consensus 288 ~~~------------~~~~~~~~~q~l~g~~~~~~~~~-~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~ 353 (382)
T TIGR00902 288 GAI------------EAFPLIFLLQILHCGTFAVCHLA-AMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIY 353 (382)
T ss_pred HhH------------hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 542 33455566667777777765544 44788887 88899999999874 56799999999999999
Q ss_pred HhhccchhhhHhhHHHHHHHHH
Q psy4866 462 KHIGMYSNFLFGGVSSLVCTVY 483 (537)
Q Consensus 462 ~~~g~~~~~~~~~~~~~~~~~~ 483 (537)
|+.|. ..|++.+++.+++.++
T Consensus 354 ~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 354 PTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HhccH-HHHHHHHHHHHHHHHH
Confidence 99986 5677777777665443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-27 Score=233.52 Aligned_cols=366 Identities=12% Similarity=0.056 Sum_probs=223.1
Q ss_pred hhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHH---HHhh
Q psy4866 80 MSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAM---YSRS 156 (537)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~---~~~~ 156 (537)
+..+...+.+|.+.++ ++|+|..+.|++.+++.++..++++++|+++||+|||++++++..+.+++..... .++.
T Consensus 24 ~~~~~~~~~~~~~l~~--~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (420)
T PRK09528 24 FIWSSWFSFFPIWLHD--INGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPL 101 (420)
T ss_pred HHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566777666552 5999999999999999999999999999999999999999887666555433221 1111
Q ss_pred HH-HHHHHHHHHHhHhhhhhhhhhhhhhccCC--CcccchhhhHhHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHH
Q psy4866 157 VL-GLYVMRTLQGFSMAAIYVISPMYLGEISE--TSIRGTIGTLFQISCHLGILYTYVLGSEL---SYMNYLTYSLIIPI 230 (537)
Q Consensus 157 ~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~i~~~l~~~~---~wr~~~~~~~~~~~ 230 (537)
.. ..+.+.++.++..+.........+.++.+ .+++++.++......++|..+++.+++.+ +|++.|++.+++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~ 181 (420)
T PRK09528 102 LQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSAL 181 (420)
T ss_pred HHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHH
Confidence 11 01122223333333333333333333332 34567788888888888888888887764 89999999888877
Q ss_pred HHHHHhhcc-cCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHHHH
Q psy4866 231 IFTVTFMFM-PESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLA 309 (537)
Q Consensus 231 ~~~~~~~~~-~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (537)
+..+..+++ +|.++... .. ++ + +..++.......++.+|++..+...+.....
T Consensus 182 ~~~~~~~~~~~~~~~~~~-~~--~~-----------~------------~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~ 235 (420)
T PRK09528 182 ILLVLLFFAKPDAPSTAK-VA--NA-----------L------------GANASAVSLKDALALLKLPKFWFLVLYVIGV 235 (420)
T ss_pred HHHHHHhcccccccchhh-hc--cc-----------h------------hcccccccHHHHHHHccCCCeEeehHHHHHH
Confidence 766555554 33321000 00 00 0 0000000011223444444333222222222
Q ss_pred HHHHhhhHHHHHHHHHHHHHh----cCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHH
Q psy4866 310 VFRAFTGVQSIIAYANTIFAS----SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGL 384 (537)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 384 (537)
... +.....+.|.++.+ .+.+. ..+....+..+..+++.++.|++.||+++|+.+..+.++.++..+++.+
T Consensus 236 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~ 311 (420)
T PRK09528 236 ACF----YDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGF 311 (420)
T ss_pred HHH----HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHh
Confidence 111 11222233333332 22221 2235556667778899999999999999999988888877776666554
Q ss_pred HHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHH-HHHHHHHHHHHHHHHHHHHHHh
Q psy4866 385 YYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAV-INILCTTLGLISYKLFFLMDKH 463 (537)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~~g~l~~~ 463 (537)
. .+.+..+....+.+....... +....+..|.+|++.+++..+. .+....+|.++++.+.|++.|.
T Consensus 312 ~------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~ 378 (420)
T PRK09528 312 A------------TGPLEVSILKLLHAFEVPFLL-VGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS 378 (420)
T ss_pred c------------ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 223333333344444333322 2334677888999999888766 6777899999999999999999
Q ss_pred hccchhhhHhhHHHHHHHHHHHhhccC
Q psy4866 464 IGMYSNFLFGGVSSLVCTVYLYYFLLE 490 (537)
Q Consensus 464 ~g~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (537)
.|++.+|.+.+++.++..++.+...++
T Consensus 379 ~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 379 IGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999998888877776666555443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=232.56 Aligned_cols=369 Identities=13% Similarity=0.103 Sum_probs=241.4
Q ss_pred Hhhhhhhhhhccchhh-HHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhh-hHHHHHHHHHHHHHHHH
Q psy4866 73 IAAFTTGMSFAWSAPV-LEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGR-KWSLLMTGPITTASWII 150 (537)
Q Consensus 73 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Gr-r~~l~~~~~l~~~~~~~ 150 (537)
+..|++....+...|. .+.+.+ ++|++..|+|++.+++.++..++++++|+++||+|| |+++.++.++..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~l~~~l~~---~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~ 85 (418)
T TIGR00889 9 FMSFLQWFIWGSWLVTLGSYMSK---TLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFF 85 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 3344445555555444 455556 799999999999999999999999999999999965 88889889888888888
Q ss_pred HHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhh--------ccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh----hH
Q psy4866 151 AMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLG--------EISETSIRGTIGTLFQISCHLGILYTYVLGSEL----SY 218 (537)
Q Consensus 151 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~----~w 218 (537)
..+.++++.+++.|++.|++.+...+...++.. |......|.+..+. +|.++++.+++.+ .|
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~------lG~~ig~~l~g~l~~~~~~ 159 (418)
T TIGR00889 86 AAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT------IGFIAAMWAVSLLDIELSN 159 (418)
T ss_pred HHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh------HHHHHHHHHHHHhcccchh
Confidence 899999999999999999987777766655432 22323345555552 4455555555443 34
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccch
Q psy4866 219 MNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSN 298 (537)
Q Consensus 219 r~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (537)
+ +|++.++..++..+..+++||+|+- +++ ++.+.. + ..+.+.++++|++.
T Consensus 160 ~-~f~~~~~~~~~~~~~~~~~~e~~~~---~~~--------------~~~~~~-------~-----~~~~~~~~~~k~~~ 209 (418)
T TIGR00889 160 I-QLYITAGSSALLGVFALTLPDIPVA---KST--------------AKMSIK-------V-----MLGLDAFILFKNKR 209 (418)
T ss_pred H-HHHHHHHHHHHHHHHHhcCCCCCCC---ccc--------------cccCHH-------H-----HhhhhHHHHhcCCC
Confidence 4 3555565555555556678887520 000 000000 0 00112234455443
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC---------CChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHH
Q psy4866 299 MKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETF---------LPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFL 369 (537)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 369 (537)
.+..++..++... .......+.+.++++.+.+ ...+....+..+..+++.++.+++.||+|+|+.+.
T Consensus 210 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~ 285 (418)
T TIGR00889 210 MAIFFFFSMLLGA----PLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVML 285 (418)
T ss_pred eeeHHHHHHHHHh----HHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 3333333222221 1223445556666665432 12346666677888899999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHH-HHHHH
Q psy4866 370 VSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVIN-ILCTT 448 (537)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~ 448 (537)
.+.++.++...++.... .. ....+..++..++.+.+.+.. .+....++.|.+|++.|++++|+.+ ....+
T Consensus 286 ~~~~~~~v~~~l~~~~~--~~------~~~~~~l~l~~~l~g~~~~~~-~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~l 356 (418)
T TIGR00889 286 LSLVAWALRFGFFAYGD--PE------YFGYALLFLSMIVYGCAFDFF-NISGSVFVEKEVPVHIRASAQGLFTLMCNGF 356 (418)
T ss_pred HHHHHHHHHHHHHHHcC--cc------hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhh
Confidence 98888777765554410 00 001122233344455554433 3444578899999999999999997 56789
Q ss_pred HHHHHHHHHHHHHHhh------ccchhhhHhhHHHHHHHHHHHhhccCCCC
Q psy4866 449 LGLISYKLFFLMDKHI------GMYSNFLFGGVSSLVCTVYLYYFLLETKG 493 (537)
Q Consensus 449 g~~~~~~~~g~l~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (537)
|.+++|.+.|.+.++. ||+..|.+.+++.+++.++.+++.+++++
T Consensus 357 g~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 357 GSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 9999999999999984 47778888888888888887777776543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=230.81 Aligned_cols=336 Identities=13% Similarity=0.085 Sum_probs=221.4
Q ss_pred hhhhhhhhccchhhHHh-hhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy4866 75 AFTTGMSFAWSAPVLEE-LLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMY 153 (537)
Q Consensus 75 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~ 153 (537)
.+..........+.+|. +.+ ++|+|..+.+++.+++.++..++++++|+++||+|||++++++.++..++.+++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~ 86 (366)
T TIGR00886 10 FFLSFSVWFAFSPLAVQMIKD---DLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL 86 (366)
T ss_pred HHHHHHHHHHhHHhhhHHHHH---HhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 33334455567888885 878 99999999999999999999999999999999999999999999999999999999
Q ss_pred Hh-hHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHh----hh----------hhH
Q psy4866 154 SR-SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLG----SE----------LSY 218 (537)
Q Consensus 154 ~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~----~~----------~~w 218 (537)
++ +++.+++.|+++|++.+. .+....++.|++|+++|++++++.....++|..+++.++ .. .+|
T Consensus 87 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w 165 (366)
T TIGR00886 87 AVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAW 165 (366)
T ss_pred HhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 99 999999999999999654 566788999999999999999998866666665554443 32 279
Q ss_pred HHHH-HHHHHHHHH-HHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhcc
Q psy4866 219 MNYL-TYSLIIPII-FTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGR 296 (537)
Q Consensus 219 r~~~-~~~~~~~~~-~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (537)
|+.| +..++...+ ..+...+.+|+|+. +.++.+.. ..+.. .. ..++.....++.+++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~-~~------------~~~~~~~~~~~~~~~ 224 (366)
T TIGR00886 166 GWAFVIVPAGILLLPALLIFFVGADTPPG-----KPATGKLS---FKGAR-WS------------VGTGALGDQLKVFRD 224 (366)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcccCCcc-----cccchhcc---ccccc-cc------------ccchhHHHHHHHHhc
Confidence 9998 443444433 34444556766521 00000000 00000 00 000000123344443
Q ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHH
Q psy4866 297 SNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAG 374 (537)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 374 (537)
+..+...+... ........+..+.|.++++. +.+. ..+....+..+..++++++.|++.||+++|+.+..+...
T Consensus 225 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~ 300 (366)
T TIGR00886 225 RHTWILALLYS----VTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLG 300 (366)
T ss_pred cchhhHHHHHH----HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHH
Confidence 33332222222 22222445666777777654 5442 344566677888899999999999999999887777666
Q ss_pred HHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHH
Q psy4866 375 CSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTL 449 (537)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 449 (537)
...+..++..... . +...+.......+...+.+.+.. ..+....+..| +++|+++|+.+..+++|
T Consensus 301 ~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 301 VAMGAFLVVLGLV--S------PLSLAVFIVLFVALFFFSGAGNG-STFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHHhcCC--C------cchHHHHHHHHHHHHHHhccccc-hhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 6555554443210 0 00222223333344444444433 34577788887 57999999999888765
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-26 Score=224.88 Aligned_cols=364 Identities=13% Similarity=0.076 Sum_probs=234.7
Q ss_pred hhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHH---
Q psy4866 75 AFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIA--- 151 (537)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~--- 151 (537)
.++.....+...|.+|.+..+ ++|.+..+.|++.+++.++..+++++.|+++||+|||+.++.+.+..+++....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~--~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~ 88 (396)
T TIGR00882 11 FFLYFFIMSAYFPFFPIWLHD--VNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIY 88 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555677777776542 689999999999999999999999999999999999999998776665544322
Q ss_pred HHH-----hhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh---hhHHHHHH
Q psy4866 152 MYS-----RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE---LSYMNYLT 223 (537)
Q Consensus 152 ~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~---~~wr~~~~ 223 (537)
.+. +.+..+++.|++.|++.+...+....+..|..+ +++...+......++|.++++.+++. .+||..|+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~ 166 (396)
T TIGR00882 89 VFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFW 166 (396)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccCchHHHH
Confidence 111 123445667888998888888888777766532 34556667667777888888777765 48999999
Q ss_pred HHHHHHHHHHHHhhc-ccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHH
Q psy4866 224 YSLIIPIIFTVTFMF-MPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAF 302 (537)
Q Consensus 224 ~~~~~~~~~~~~~~~-~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (537)
+.+++.++..+..+. .||+|.. ++.. +..+..+++++..+.++++|++..+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (396)
T TIGR00882 167 LGSGFALILMLLLMFAKPKAPSS-------ATVA-------------------NALGANASAFSLKLALELFRQRKFWMF 220 (396)
T ss_pred HHHHHHHHHHHHHHHhCCCCchh-------hhhh-------------------cccccccCCCCHHHHHHHHcCCcHHHH
Confidence 988887775544444 4444310 0000 000000001112234566665544333
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhc----CCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHH
Q psy4866 303 VFMAFLAVFRAFTGVQSIIAYANTIFASS----ETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSL 377 (537)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 377 (537)
.+...... ..+.....+.+.+++.. +.+. ..+....+..+...++.+..+++.||+++|+.+.++.++.++
T Consensus 221 ~l~~~~~~----~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l 296 (396)
T TIGR00882 221 VLYVVGVA----CVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSV 296 (396)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 22222211 11223333445554443 2221 123455556677888889999999999999998888877777
Q ss_pred HHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHH-HHHHHHHHHHHHHHH
Q psy4866 378 FSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAV-INILCTTLGLISYKL 456 (537)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~ 456 (537)
...+.... .+.+...+...+.+.+..... .....+..+..|++.++++.+. .+....+|+++++.+
T Consensus 297 ~~~~~~~~------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l 363 (396)
T TIGR00882 297 RIIGSSFA------------TTALEVVILKMLHAFEVPFLL-VGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTL 363 (396)
T ss_pred HHHHHHhc------------CChHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHh
Confidence 66554331 233333444444444433221 2233456777788888887776 678899999999999
Q ss_pred HHHHHHhhccchhhhHhhHHHHHHHHHHH
Q psy4866 457 FFLMDKHIGMYSNFLFGGVSSLVCTVYLY 485 (537)
Q Consensus 457 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 485 (537)
.|++.|..|+..+|.+.+++.++..+...
T Consensus 364 ~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 364 AGNMYDSIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999899888888777766543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-26 Score=222.20 Aligned_cols=350 Identities=10% Similarity=0.004 Sum_probs=238.3
Q ss_pred hhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhh----HHHHHHHHHHHHHHHH
Q psy4866 75 AFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRK----WSLLMTGPITTASWII 150 (537)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr----~~l~~~~~l~~~~~~~ 150 (537)
.+...+..+...|.+|.+.+ ++|.|..++|++.+++.++..++++++|+++||+||| +.+.++..+. ....
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~---~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~ 87 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLK---GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAF 87 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHH---hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHH
Confidence 34444566788999999999 9999999999999999999999999999999999984 3333332222 2233
Q ss_pred HHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHH
Q psy4866 151 AMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSL 226 (537)
Q Consensus 151 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~ 226 (537)
...+++++.+++.|++.|++.+...+...+++.++ +++|+++.+......++|.+++|.+++. ++||..|++.+
T Consensus 88 ~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~ 165 (382)
T PRK11128 88 WFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILT 165 (382)
T ss_pred HHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence 44468899999999999999998889888887776 3557888888888888888888888865 49999998877
Q ss_pred HHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHH
Q psy4866 227 IIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMA 306 (537)
Q Consensus 227 ~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (537)
+..++..+..++.||.++ +++ + + .+.++...++++++|++..+......
T Consensus 166 ~~~~~~~~~~~~~~~~~~----~~~--------------~------~-------~~~~~~~~~~~~i~~~~~~~~~~~~~ 214 (382)
T PRK11128 166 AGVASMLLGQLLRPTIMP----QGE--------------S------R-------QQESAGWPAWKALLKEPTVWRFLLCV 214 (382)
T ss_pred HHHHHHHHHHHccCCCCC----ccc--------------c------c-------cccccccchHHHHHcChhHHHHHHHH
Confidence 655544444444454310 000 0 0 00000123456777665544443333
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHH
Q psy4866 307 FLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLY 385 (537)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (537)
++.... ......+.+.+.++.+.+. ..+....+..+..++..++.+++.||+++|+.+..+.++.++..+.+...
T Consensus 215 ~l~~~~----~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~ 290 (382)
T PRK11128 215 SLLQGS----HAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST 290 (382)
T ss_pred HHHHHH----hHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 333222 3344556677777766653 33455556677888888999999999999999888887777766555432
Q ss_pred HHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHH-HHHHHHHHHHHHHHHHHHHhh
Q psy4866 386 YYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVIN-ILCTTLGLISYKLFFLMDKHI 464 (537)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~~~~g~l~~~~ 464 (537)
++.+..++..++.+.+.+.... ....+..+. +++++++..++.+ ....+|..++|.+.|.+.|..
T Consensus 291 ------------~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~ 356 (382)
T PRK11128 291 ------------TALPWLIVIQILHCGTFTVCHL-AAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL 356 (382)
T ss_pred ------------hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2344455556666666555433 344666665 5556788888886 445677799999999999998
Q ss_pred ccchhhhHhhHHHHHHH
Q psy4866 465 GMYSNFLFGGVSSLVCT 481 (537)
Q Consensus 465 g~~~~~~~~~~~~~~~~ 481 (537)
|+. .++..+++.+++.
T Consensus 357 g~~-~~~~~~~~~~~~~ 372 (382)
T PRK11128 357 GAG-VFWVMALVALPAL 372 (382)
T ss_pred cHH-HHHHHHHHHHHHH
Confidence 874 5655555555443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.1e-26 Score=222.23 Aligned_cols=361 Identities=15% Similarity=0.134 Sum_probs=241.1
Q ss_pred HhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhh-----hhhH-HHHHHHHHHHH
Q psy4866 73 IAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI-----GRKW-SLLMTGPITTA 146 (537)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-----Grr~-~l~~~~~l~~~ 146 (537)
...+..|+..+.....+|.+.+ +.|+|.+++|++..+... .+..+++|+++||+ |||| ++.++.++.++
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~---~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l 80 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMT---VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA 80 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence 3467788899999999999999 889999999999777776 59999999999999 8765 78888888888
Q ss_pred HHHHHHHH---hhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh-----hhH
Q psy4866 147 SWIIAMYS---RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE-----LSY 218 (537)
Q Consensus 147 ~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~-----~~w 218 (537)
+..+.++. .+++.+++..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.. ++|
T Consensus 81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw 160 (402)
T PRK11902 81 SIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGW 160 (402)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCH
Confidence 88887776 3577788888888998899999999999999999999999999999999999998876543 489
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccch
Q psy4866 219 MNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSN 298 (537)
Q Consensus 219 r~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (537)
|..|++.++..++..+..+++||+++. +++ . ++..+ +.+..++++++++.
T Consensus 161 ~~~f~i~a~~~l~~~l~~~~~~e~~~~---~~~--------------~-~~~~~------------~~~~~~~~l~~~~~ 210 (402)
T PRK11902 161 GNTYLLMAGLMLAGALTTLWAPEPEVP---ARP--------------P-RSLGE------------AVVGPLRDFFSRRG 210 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccc---ccc--------------c-chhHH------------HHHHHHHHHHhCcC
Confidence 999999888876665555667776421 000 0 00000 00223455666655
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCC-hhHHHHHH-HHHHHHHhhhHhhhhcccCCcHHHHHhhHHHH
Q psy4866 299 MKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLP-SDYISILF-AIILLVSIFPSTYYIDRAGRRVLFLVSSAGCS 376 (537)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 376 (537)
.+..++...+....... ......+.+.++.|.+.. .+...... .++.+++.++++++.||+++|+.+..+..+..
T Consensus 211 ~~~~l~~~~l~~~~~~~---~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~ 287 (402)
T PRK11902 211 AWALLLLIVLYKLGDAF---AGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQA 287 (402)
T ss_pred HHHHHHHHHHHHhHHHH---HHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55444433333222111 111222333344555422 22333233 34578899999999999999988776666655
Q ss_pred HHHHHHHHHHHhhhccccCCcccchhhHHHHHH----HHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHH
Q psy4866 377 LFSFIAGLYYYVTIELQYEIPYTSWVPFLSISL----LGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLI 452 (537)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 452 (537)
+..+.+...... +++.+.......+ .+...+ ...+....++.+.+|.+ ..++.+....++..+
T Consensus 288 l~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~ 354 (402)
T PRK11902 288 VSNLGYWVLAVT--------PKHLWTMALAIGIENLCGGMGTA-AFVALLMALCNRSFSAT----QYALLSALASVGRVY 354 (402)
T ss_pred HHHHHHHHHHhc--------CCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHH
Confidence 544333221110 1122322222222 112222 22333445666666644 456666666778877
Q ss_pred HHHHHHHHHHhhccchhhhHhhHHHHHHHHHH
Q psy4866 453 SYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYL 484 (537)
Q Consensus 453 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 484 (537)
++.+.|.+.|..|+...|.+.+++++++.++.
T Consensus 355 ~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 355 VGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 77789999999999988888877777765554
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-25 Score=202.24 Aligned_cols=357 Identities=15% Similarity=0.149 Sum_probs=272.2
Q ss_pred HHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHH
Q psy4866 69 VTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASW 148 (537)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~ 148 (537)
+.++...|+.|+......+++|.+++ .|+++..|.+++..+++.|+.+++++.|++.+|+|+|+.+++|+.++++++
T Consensus 16 v~~t~lFfl~G~~~~l~diLip~l~~---~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~ 92 (422)
T COG0738 16 VLLTSLFFLWGFITCLNDILIPHLKE---VFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGA 92 (422)
T ss_pred HHHHHHHHHHHHHhhcchhhHHHHHH---HhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 44555578889999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHH---HHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh---------
Q psy4866 149 IIAM---YSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL--------- 216 (537)
Q Consensus 149 ~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~--------- 216 (537)
.+.. ...+|..++++-|+.|.|.+...+.++.+++...++++..+.+++.+...++|.+++|++++.+
T Consensus 93 ~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~ 172 (422)
T COG0738 93 ALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTM 172 (422)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhcc
Confidence 9984 5668999999999999999999999999999999998889999999999999999999998652
Q ss_pred --------------hHHHHHHHHHHHHHHHHHHhhc--ccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHh
Q psy4866 217 --------------SYMNYLTYSLIIPIIFTVTFMF--MPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQN 280 (537)
Q Consensus 217 --------------~wr~~~~~~~~~~~~~~~~~~~--~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (537)
.|+++|...+...++..+.... .|+.+. + +.
T Consensus 173 ~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~----------------------------~-----~~ 219 (422)
T COG0738 173 SAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV----------------------------A-----AP 219 (422)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc----------------------------c-----cc
Confidence 3677777777666655544433 343310 0 00
Q ss_pred hhhcccccchHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCCC-ChhHHHHHHHHHHHHHhhhHhhh
Q psy4866 281 TSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYY 358 (537)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l 358 (537)
...+..+....+++++++.+...+..+++.. .......|++.++.+ .+.+. ++....+.+..+.++|++++.++
T Consensus 220 ~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG----~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~l 295 (422)
T COG0738 220 SLGASGSAGLSSLFQNKHLRLGVLAIFLYVG----AEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSAL 295 (422)
T ss_pred cccccccchHHHHHhChHHHHHHHHHHHHHh----HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001111145667766665554444444443 466777888888887 45443 45578888899999999999999
Q ss_pred hcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchh
Q psy4866 359 IDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVS 438 (537)
Q Consensus 359 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 438 (537)
..|+...|.+....++..+.++...+. +....+....+.+.+.+..+ |..++...+..| ++ ...
T Consensus 296 m~~~~~~k~Laf~a~~~ill~~~~~l~-------------~g~v~~~~l~~ig~F~simf-PTIfslal~~l~-~~-ts~ 359 (422)
T COG0738 296 MSRIKPEKYLAFYALIAILLLLAVALI-------------GGVVALYALFLIGLFNSIMF-PTIFSLALKNLG-EH-TSV 359 (422)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHh-------------cChHHHHHHHHHHHHhHHHH-HHHHHHHHhccC-cc-ccc
Confidence 999999888887776666655555553 23555666667777766655 555688888888 43 334
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhHHHHHHH
Q psy4866 439 CAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCT 481 (537)
Q Consensus 439 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 481 (537)
.|..-...-+|+++.|++.|++.|+.|....+......|.+..
T Consensus 360 ~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 360 GSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred cceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4445555678999999999999999998877665555555554
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-25 Score=217.09 Aligned_cols=377 Identities=10% Similarity=0.072 Sum_probs=229.7
Q ss_pred HHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHH
Q psy4866 66 FLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITT 145 (537)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~ 145 (537)
..+...++......+.....+.+++.+.. |+|- .....|+.+.+.++.+++.++.|+++|.||||.+++.+.++..
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~a~~l~~I~~---diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~v 119 (599)
T PF06609_consen 44 ASFAAFSLAVIAAYFVLVLPASILPYINA---DIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGV 119 (599)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHH---hcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHH
Confidence 33333444444444555566778889988 8985 4678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh----hHHHH
Q psy4866 146 ASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL----SYMNY 221 (537)
Q Consensus 146 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~----~wr~~ 221 (537)
+|+++++.++|...++++-.+.|+|.|.... ....++|..|.|.|.....+...........++.++..+ +|||.
T Consensus 120 vG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~ 198 (599)
T PF06609_consen 120 VGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWI 198 (599)
T ss_pred hHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchH
Confidence 9999999999999999999999999877764 566689999999998877776655555444556666443 79999
Q ss_pred HHHHHHHHHHHHHHhhcccCChHHHHHhCCH---HHHHHHHHhhc-------------------CC-ChhhHHHHHHHH-
Q psy4866 222 LTYSLIIPIIFTVTFMFMPESPYFYAIKNQE---GKAIESLKWLR-------------------NK-TADQVQSELQII- 277 (537)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~---~~a~~~~~~~~-------------------~~-~~~~~~~~~~~~- 277 (537)
|++.++...+.++..+++...|++-..+++. .+..+.++++. .. .+.+...-....
T Consensus 199 ~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lv 278 (599)
T PF06609_consen 199 FYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLV 278 (599)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHH
Confidence 9999988766543332221223222222211 12122221111 00 000000000000
Q ss_pred -----------HHhhhhcccccchHHhhcc-chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCCC----ChhHH
Q psy4866 278 -----------KQNTSKNVERTNFREFMGR-SNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL----PSDYI 340 (537)
Q Consensus 278 -----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~ 340 (537)
-+.....++.--..+++++ +.+...++..++... .++....+.|..... .+.+. ...+.
T Consensus 279 iG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~----~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~ 354 (599)
T PF06609_consen 279 IGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGM----NFFSVNILWPQQVVNVFGSDPISITEIGWI 354 (599)
T ss_pred HHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhccCCCcccceeehh
Confidence 0000000111122345553 222222222222221 133443444443332 22221 23456
Q ss_pred HHHHHHHHHHHhhhHhhhhcccCCcHHH-HHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccc
Q psy4866 341 SILFAIILLVSIFPSTYYIDRAGRRVLF-LVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFG 419 (537)
Q Consensus 341 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (537)
....+++..++.++.|.+..++++-|.. +++.+++.+++.+++... +++....+...++.+.+.+....
T Consensus 355 s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~----------~~n~~~~i~~~~l~g~giG~~~~ 424 (599)
T PF06609_consen 355 SSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR----------PDNKNAAIAFLVLAGFGIGGILV 424 (599)
T ss_pred hhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHcc----------CCCcchHHHHHHHHHHhHHHHHH
Confidence 6677888888888899999888765544 455555554444443321 12222233444444555444433
Q ss_pred cchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4866 420 PLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 462 (537)
Q Consensus 420 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 462 (537)
+ ....+.-..|++..|++.|+...++.+|+.++..++..+..
T Consensus 425 ~-~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~ 466 (599)
T PF06609_consen 425 P-AIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFT 466 (599)
T ss_pred H-HHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3 33555666899999999999999999999999888866553
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-28 Score=218.69 Aligned_cols=374 Identities=14% Similarity=0.082 Sum_probs=265.6
Q ss_pred HHHHHHHHhhhhhhhhhccchhhHHhhhcCCC-----------------------------------------------C
Q psy4866 66 FLCVTACIAAFTTGMSFAWSAPVLEELLSKES-----------------------------------------------P 98 (537)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~ 98 (537)
+++..++.+.+.+.+..+...|.+|.+..+.. +
T Consensus 21 lilviv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~ 100 (464)
T KOG3764|consen 21 LILVIVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEAIS 100 (464)
T ss_pred eEEEEEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchhccC
Confidence 34555666777777777777777776654221 3
Q ss_pred CCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhh
Q psy4866 99 IPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVIS 178 (537)
Q Consensus 99 ~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 178 (537)
.+-+++++|++.+++.+.+.+..++.|.+.||+|+|..+++|++++..+++++++.++|+++++.|.+||+|.+...++.
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg 180 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG 180 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCcc-cchhhhHhHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHhhcccCChHHHHHhCCHH
Q psy4866 179 PMYLGEISETSI-RGTIGTLFQISCHLGILYTYVLGSEL----SYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEG 253 (537)
Q Consensus 179 ~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~i~~~l~~~~----~wr~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~ 253 (537)
.++++|.+|+++ |++++|+.-.+.++|.++||.+|+.+ |.+.+|++.+++.++-..+.+++-|.-
T Consensus 181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~---------- 250 (464)
T KOG3764|consen 181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPT---------- 250 (464)
T ss_pred HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcc----------
Confidence 999999998765 79999999999999999999999774 899999999999988776665542220
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC
Q psy4866 254 KAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSET 333 (537)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (537)
+.+.+...+..+++++++.+..+ ...........+....---++..+.+.-.
T Consensus 251 ------------------------~~~~~~~~~~~~~~~Ll~dP~I~----~~agai~~~n~~lafLePtlslwm~e~m~ 302 (464)
T KOG3764|consen 251 ------------------------EMDPDSTEQGTPMWSLLMDPYIL----LIAGAITFSNSSLAFLEPTLSLWMLETMF 302 (464)
T ss_pred ------------------------ccCccccccCccHHHHHhCchHh----hhhcchhhccchHHHhCcccHHHHHHhcc
Confidence 00000122245567777655532 22222222222222222233333333322
Q ss_pred C--CChhHHHHHHHHHHHHHhhhHhhhhcccC--CcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHH
Q psy4866 334 F--LPSDYISILFAIILLVSIFPSTYYIDRAG--RRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISL 409 (537)
Q Consensus 334 ~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (537)
. ...+..++...+..+++..+.|.+.||++ |......+.+..+++.....+.. . -...|.......+
T Consensus 303 ~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~--~-------~~~L~vp~~~l~~ 373 (464)
T KOG3764|consen 303 TPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFAT--S-------IAQLWVPNFGLGF 373 (464)
T ss_pred CCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhh--h-------HHHHhhhhHHHHH
Confidence 1 14456677788899999999999999999 43333334433333333332221 0 0123444444444
Q ss_pred HHHHHhhccccchhhhccccCCcc---ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhHHHHHHHHHHHh
Q psy4866 410 LGVFFNLGFGPLFTPLLSEYFSSN---MKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYY 486 (537)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 486 (537)
.+........|.. .++.+.-..+ ..|...++......+|.++||.+.|.+.+..|+.|...+.+...++..-++.+
T Consensus 374 ~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~l 452 (464)
T KOG3764|consen 374 GIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLL 452 (464)
T ss_pred HHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555544 5555544333 67899999999999999999999999999999999888888888877766544
Q ss_pred h
Q psy4866 487 F 487 (537)
Q Consensus 487 ~ 487 (537)
+
T Consensus 453 l 453 (464)
T KOG3764|consen 453 L 453 (464)
T ss_pred H
Confidence 3
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-25 Score=220.09 Aligned_cols=406 Identities=11% Similarity=0.074 Sum_probs=263.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHH
Q psy4866 63 LFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGP 142 (537)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~ 142 (537)
++|..++.........+..++ .+...|.+++ ++|+|..+++++.++. .....++++.|++.||+|||++++++.+
T Consensus 25 ~Rw~~lva~~~~~~~~g~~y~-fsv~s~~L~~---~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~l 99 (591)
T PTZ00207 25 RRFALLVLGAFCSICTSFMYA-FNLISGAMQA---RYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMT 99 (591)
T ss_pred chHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---HhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 344444444444444444433 3456678888 9999999999998874 4456778889999999999999999999
Q ss_pred HHHHHHHHHHHH------hhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHH-HHHHhhh
Q psy4866 143 ITTASWIIAMYS------RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILY-TYVLGSE 215 (537)
Q Consensus 143 l~~~~~~~~~~~------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i-~~~l~~~ 215 (537)
++++++++++++ ++++.+++.|++.|+|.+...+.+...+.+|+| ++||++.++...+.++|.++ +++....
T Consensus 100 l~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l 178 (591)
T PTZ00207 100 VFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAF 178 (591)
T ss_pred HHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 689999999999999999999999999999996 67999999999999999976 4444444
Q ss_pred h--hHHHHHHHHHHHHHHHHHH-hhc--ccCChHHHHHhCCHHHHHHHHHhhcCCCh-----------------------
Q psy4866 216 L--SYMNYLTYSLIIPIIFTVT-FMF--MPESPYFYAIKNQEGKAIESLKWLRNKTA----------------------- 267 (537)
Q Consensus 216 ~--~wr~~~~~~~~~~~~~~~~-~~~--~~esp~~l~~~~~~~~a~~~~~~~~~~~~----------------------- 267 (537)
+ +|+..|++.++++++..++ .++ .|+.|+|..++++.+++++..++.++..-
T Consensus 179 ~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~y 258 (591)
T PTZ00207 179 FSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVF 258 (591)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHH
Confidence 4 7888888888887664433 333 46666665555444444333222111100
Q ss_pred --------------h----------------------------------hHHHHHHHH-H------Hhh--------h-h
Q psy4866 268 --------------D----------------------------------QVQSELQII-K------QNT--------S-K 283 (537)
Q Consensus 268 --------------~----------------------------------~~~~~~~~~-~------~~~--------~-~ 283 (537)
+ +.+.+..+. + +.. + .
T Consensus 259 l~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (591)
T PTZ00207 259 LPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYI 338 (591)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCC
Confidence 0 000000000 0 000 0 0
Q ss_pred -cccccchHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCCCCh--h-HHHHHHHHHHHHHhhhHhhh
Q psy4866 284 -NVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETFLPS--D-YISILFAIILLVSIFPSTYY 358 (537)
Q Consensus 284 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~-~~~~~~~~~~~~~~~~~g~l 358 (537)
+....++.+.+++.. +|+.++.+++..+....+...+.++.+.. |...+. . ....+.++++.+|++..|++
T Consensus 339 ~P~~~~t~~q~l~~~d----~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~ 414 (591)
T PTZ00207 339 APQFQETFIEGLKTAR----LWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYF 414 (591)
T ss_pred CCCCcchHHHHHhchh----HHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHH
Confidence 000113333333333 44555555555555556666667777776 552222 2 36788899999999999988
Q ss_pred hcccCCc--------HHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccC
Q psy4866 359 IDRAGRR--------VLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYF 430 (537)
Q Consensus 359 ~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (537)
.....+| ...+....++.++.+++.+. .+.....+..++.+++++..+. +....++|+|
T Consensus 415 ~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~------------~p~~~L~~~~~lvg~~~G~~~~-~~~~i~selF 481 (591)
T PTZ00207 415 EIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLT------------LPKAALPLPYFIAAFANGFMAA-TIALVTRTIF 481 (591)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHHHHHHHHH------------CCccHhHHHHHHHHHHhhHhHH-HHHHHHHHHh
Confidence 7222221 22222222244444444432 1113456667777777777664 4558999999
Q ss_pred CccccchhhHHHHHHHHHHHHHH-HHHHHHHHHhhc-------------cchhhhHhhHHHHHHHHHHHhhccCCC
Q psy4866 431 SSNMKAVSCAVINILCTTLGLIS-YKLFFLMDKHIG-------------MYSNFLFGGVSSLVCTVYLYYFLLETK 492 (537)
Q Consensus 431 p~~~~~~~~g~~~~~~~~g~~~~-~~~~g~l~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (537)
. ++-|+-.-+.....-+|+.+. -.+.|.++|+-. ++.+|+++++++++++++...+.-+++
T Consensus 482 g-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r 556 (591)
T PTZ00207 482 A-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR 556 (591)
T ss_pred c-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence 9 777888777777777777766 567888887532 345788999999988888765554544
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=227.69 Aligned_cols=395 Identities=16% Similarity=0.174 Sum_probs=275.3
Q ss_pred HHHHHHHHHh-hhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHH
Q psy4866 65 SFLCVTACIA-AFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPI 143 (537)
Q Consensus 65 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l 143 (537)
|.+++...+. .+.+|+... .+...+.+++ +++.+.++++|+.++......+..++.+.+.||+|.|++.+.|.++
T Consensus 45 WvV~~a~fl~~~~~~g~~~~-~Gv~~~~~~~---~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v 120 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINS-FGLLFEELMD---YFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLV 120 (509)
T ss_pred eeeeHhHHHHHHhhhcchhe-ehhhHHHHHH---HhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHH
Confidence 4444444333 233443333 4477889999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHH-HHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhH
Q psy4866 144 TTASWIIAMYSRSVLGLYV-MRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSY 218 (537)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~w 218 (537)
..+|.++.++++++|++++ .-++.|+|.|+.+.....++..|| +++|+.+.++..++.++|.++-|.+... +||
T Consensus 121 ~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~ 199 (509)
T KOG2504|consen 121 AALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGW 199 (509)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCc
Confidence 9999999999999988876 479999999999999999999888 4579999999999999999988877765 499
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-cCChHHHHHhCCHHHHHHHHHhhcC------------CChhhHH---HHHHHHHHhhh
Q psy4866 219 MNYLTYSLIIPIIFTVTFMFM-PESPYFYAIKNQEGKAIESLKWLRN------------KTADQVQ---SELQIIKQNTS 282 (537)
Q Consensus 219 r~~~~~~~~~~~~~~~~~~~~-~esp~~l~~~~~~~~a~~~~~~~~~------------~~~~~~~---~~~~~~~~~~~ 282 (537)
|+.+++.+.+.+-.++....+ |.+++.... ..+..+......+ ++....+ .+.++.++..+
T Consensus 200 r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (509)
T KOG2504|consen 200 RGALLIFGGISLNVLVAGALLRPLSPPKKPN---EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPD 276 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcCCCch---hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCc
Confidence 999998888876555444433 323211000 0000000000000 0000000 00011111111
Q ss_pred hc---ccccch----HHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhh
Q psy4866 283 KN---VERTNF----REFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFP 354 (537)
Q Consensus 283 ~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 354 (537)
+. ..+... .+++++ +.++...+.......++.....++|.+....+... ++.....+.++..++++++
T Consensus 277 ~~~~~~~~~~~~~~d~~ll~~----~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~ 352 (509)
T KOG2504|consen 277 KWRNSPLQAFLSMLDLSLLKD----PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRII 352 (509)
T ss_pred cccccchhhhhhhhhHHHHcC----chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhh
Confidence 00 111111 344444 33555555566666678888899999999888774 5668888999999999999
Q ss_pred HhhhhcccCCcH--HHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCc
Q psy4866 355 STYYIDRAGRRV--LFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSS 432 (537)
Q Consensus 355 ~g~l~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 432 (537)
.|++.|+...++ ...++.++.+++.+.+.+. ...+.......+++...+. +..+....+.|+.+.
T Consensus 353 ~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~------------~~~~~l~~~~~~fG~~~g~-~~~l~~~i~~~~~g~ 419 (509)
T KOG2504|consen 353 LGLLADKPGIRALVLFLLTLLIAGLARLFLPFA------------TTYVGLIVFSILFGFCVGS-FSSLTPVILVDLVGL 419 (509)
T ss_pred hhhhcCccccchHHHHHHHHHHHHHHHHHHHHh------------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCh
Confidence 999999988444 3444444444444333331 2334444445555555443 445555688999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhhHhhHHHHHHHHHH
Q psy4866 433 NMKAVSCAVINILCTTLGLISYKLFFLMDKHIG-MYSNFLFGGVSSLVCTVYL 484 (537)
Q Consensus 433 ~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~ 484 (537)
++-..+.|+...+..++..++|++.|.+.|..| |...|...++..+++..+.
T Consensus 420 ~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~ 472 (509)
T KOG2504|consen 420 EKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLL 472 (509)
T ss_pred hhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHH
Confidence 999999999999999999999999999999888 7777888887777776554
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-25 Score=246.76 Aligned_cols=351 Identities=15% Similarity=0.048 Sum_probs=232.3
Q ss_pred hhHHhhhcCCCCCCCCC--ChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHH---HHhhHHHHH
Q psy4866 87 PVLEELLSKESPIPMSP--NEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAM---YSRSVLGLY 161 (537)
Q Consensus 87 ~~~~~~~~~~~~~~~s~--~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~---~~~~~~~l~ 161 (537)
.+.+.+.. +++.+. ...+++.+++.+++.++++++|+++||+|||++++++.++.+++.++.. .+++++.++
T Consensus 31 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 107 (1146)
T PRK08633 31 LIQNTLIK---AYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAF 107 (1146)
T ss_pred HHHHHHHH---HcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 33444444 455443 4479999999999999999999999999999999999877666555443 457899999
Q ss_pred HHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh-------------hHHHHHHHHHHH
Q psy4866 162 VMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-------------SYMNYLTYSLII 228 (537)
Q Consensus 162 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~-------------~wr~~~~~~~~~ 228 (537)
++|+++|++.+...++..+++.|++|+++|++++++...+..+|.++++.+++.+ +|++.+.+..+.
T Consensus 108 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (1146)
T PRK08633 108 AVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLA 187 (1146)
T ss_pred HHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998888664 133333333333
Q ss_pred -HHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHH
Q psy4866 229 -PIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAF 307 (537)
Q Consensus 229 -~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (537)
.++.++..+.+||+|.....+.+ ...... .......++.+++++..+..++...
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (1146)
T PRK08633 188 VAVLGLIFAYRLPKVPAAAPEVFD-------------KKKYLF------------PKLLWRNLKLLRSDRVLWLAIIGLS 242 (1146)
T ss_pred HHHHHHHHHhcCcCCCCCCccccc-------------cccccc------------HHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 23344455567877632100000 000000 0000123344554444333333332
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHh-cCCCCC--hhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHH
Q psy4866 308 LAVFRAFTGVQSIIAYANTIFAS-SETFLP--SDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGL 384 (537)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 384 (537)
+..+ .......++|.++.. .+.+.. .++......++.+++.++.+++.||+++++.+.++.++.+++.+++.+
T Consensus 243 ~~~~----~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 318 (1146)
T PRK08633 243 YFWF----ISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPT 318 (1146)
T ss_pred HHHH----HHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHH
Confidence 2222 133444556666654 355422 346667778888999999999999999988888777777666655544
Q ss_pred HHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4866 385 YYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHI 464 (537)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 464 (537)
. .+.+..++..++++.+.+....+ ..+++.+..|++.||+++|+.+++.++|.++++.+.+.+.. .
T Consensus 319 ~------------~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~-~ 384 (1146)
T PRK08633 319 A------------PSLASVLVLFFLFGFSAGLFIVP-LNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG-L 384 (1146)
T ss_pred h------------hhHHHHHHHHHHHHHHHHHhhHH-HHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 2 22334445555556555554433 45888899999999999999999999999888777665543 3
Q ss_pred cc--chhhhHhhHHHHHHHHH
Q psy4866 465 GM--YSNFLFGGVSSLVCTVY 483 (537)
Q Consensus 465 g~--~~~~~~~~~~~~~~~~~ 483 (537)
++ ...+++.+.+.++..++
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~ 405 (1146)
T PRK08633 385 GLSPAGLFYLIALVTLIGTLY 405 (1146)
T ss_pred ccCHHHHHHHHHHHHHHHHHH
Confidence 33 33444444444443333
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-25 Score=246.98 Aligned_cols=346 Identities=12% Similarity=0.063 Sum_probs=229.4
Q ss_pred ChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhh
Q psy4866 104 NEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLM---TGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPM 180 (537)
Q Consensus 104 ~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~---~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 180 (537)
...++..+++.+++.++++++|+++||+|||+++.. ..++..+..+++...+|+++++++|+++|++.+...|+..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 357888999999999999999999999999997633 22233333333344589999999999999999999999999
Q ss_pred hhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHhhcccCChHHHHHhCCHHHHH
Q psy4866 181 YLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL----SYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAI 256 (537)
Q Consensus 181 ~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~----~wr~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~ 256 (537)
++.+++++++|++++++.+++.++|.++||++++.+ +|++.|+..++..++.+++.+++|+++.- +...
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---- 204 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNA---APDL---- 204 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC---CCCC----
Confidence 999999999999999999999999999999998774 89999866656666666666667765310 0000
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCCC
Q psy4866 257 ESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETFL 335 (537)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 335 (537)
....... .+ ....++.+.+++..+...+...+..+. ...+..++|.++.+. +.+.
T Consensus 205 --------~~~~~~~---~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~g~~~ 260 (1140)
T PRK06814 205 --------KIDRNII---RS---------TITLLKYAKADKRIWLAILGISWFWLV----GAVVLSQLPLLAKETLGGDE 260 (1140)
T ss_pred --------eeccchH---HH---------HHHHHHHHhcCchHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHcCCch
Confidence 0000000 00 012344455544444433333332222 344556778877664 4432
Q ss_pred -ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhh--cc------ccCCcccchhhHHH
Q psy4866 336 -PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTI--EL------QYEIPYTSWVPFLS 406 (537)
Q Consensus 336 -~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~ 406 (537)
..+......+++.+++.++.|++.++..+++.+..+.++.+++.+.+.+...... .. ..-...+.+...+.
T Consensus 261 ~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1140)
T PRK06814 261 NVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILID 340 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHH
Confidence 3456777888999999999999998887776665555555544443332100000 00 00000233444555
Q ss_pred HHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh-hccchhhhHhhHHHHHHH
Q psy4866 407 ISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKH-IGMYSNFLFGGVSSLVCT 481 (537)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~ 481 (537)
.++++.+.+....+ ..+++.+..|++.+|+++|+.+++..++..+++.+.+.+.+. .++...+++.+++.++..
T Consensus 341 ~~~~g~~~~~~~~~-~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~ 415 (1140)
T PRK06814 341 LFGLAAAGGLYIVP-LFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLIVA 415 (1140)
T ss_pred HHHHHHHHHHhHHH-HHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 55666665554444 458999999999999999999999999999999999998753 344444444444433333
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.8e-25 Score=207.07 Aligned_cols=353 Identities=14% Similarity=0.158 Sum_probs=234.9
Q ss_pred hccchhhHHhhhcCCCCCCCCCCh-hhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy4866 82 FAWSAPVLEELLSKESPIPMSPNE-GSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGL 160 (537)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l 160 (537)
....+.+.|.+.+ ++|+|..| .|.+.+++..+++++.++.|+++||+|.|+++.++.+.+++.+++.++++++..+
T Consensus 42 R~n~s~a~p~L~~---elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L 118 (511)
T TIGR00806 42 RPGESFITPYLLT---VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHM 118 (511)
T ss_pred hchHHHHHHHHHH---HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788998 99999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh---hhHHHHHHHHHH---HHHHHHH
Q psy4866 161 YVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE---LSYMNYLTYSLI---IPIIFTV 234 (537)
Q Consensus 161 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~---~~wr~~~~~~~~---~~~~~~~ 234 (537)
.+.|++.|++.|..+ +...++..|+|+++|+++.+++.++..+|.++++++++. ++||+.+.+.-+ ...+.++
T Consensus 119 ~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~ 197 (511)
T TIGR00806 119 QLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVF 197 (511)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999988876 488876555433 3344556
Q ss_pred HhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcc---cccchHHhhccchHHHHHHHHHHHHH
Q psy4866 235 TFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNV---ERTNFREFMGRSNMKAFVFMAFLAVF 311 (537)
Q Consensus 235 ~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (537)
..+++|..++-+.-+++.+.-............++. .+..+..+...... -...+++..+ .+.++-..++..
T Consensus 198 ~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~y~----n~~vl~WSlWwa 272 (511)
T TIGR00806 198 LALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPG-GKLEDYLGTCRDSFLVRMLSELVTIYR----NPQLLLWSLWWV 272 (511)
T ss_pred HHHhCCCCchhhhhccccccccccccccccCCCCCc-cccchhhhhhhhHHHHHHHHHHHHHhc----CcchhhhhHHHH
Confidence 667788555444333221100000000000000000 00000000000000 0112222222 223444455555
Q ss_pred HHhhhHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhH--HHHHHHHHHHHHHH
Q psy4866 312 RAFTGVQSIIAYANTIFASSETFL--PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSA--GCSLFSFIAGLYYY 387 (537)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 387 (537)
...++++-+..|...+.+....+. -.+..-.+..+.+.+..+..|++-.+..+...+.++.+ +.+..++++..
T Consensus 273 ~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~--- 349 (511)
T TIGR00806 273 FNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQ--- 349 (511)
T ss_pred HHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhc---
Confidence 566668888888888887664422 12244455566677788888888655543223333222 22222222222
Q ss_pred hhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHH
Q psy4866 388 VTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKL 456 (537)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 456 (537)
..+.|...+..+++...+.+.. ++...-++.....+.-|..+|+++++.-+-..+...+
T Consensus 350 ---------t~~Iw~~Y~~yvlf~~~y~fli-tia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~i 408 (511)
T TIGR00806 350 ---------SHDIWVLYVTYVLFRGIYQFLV-PIATFQIASSLSKELCALVFGINTFVATALKTIITAV 408 (511)
T ss_pred ---------ccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEE
Confidence 3567777888888888887654 4444666666677777999999988877666555543
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=214.75 Aligned_cols=367 Identities=13% Similarity=0.133 Sum_probs=256.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHH
Q psy4866 62 FLFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTG 141 (537)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~ 141 (537)
.+.|..-++..++..+ ....++-+.. +..-|+..++++..+..+...+.++++|.++||++||++++.+.
T Consensus 13 r~lw~a~~iS~lG~~~-------~~va~~wlv~---~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~ 82 (524)
T PF05977_consen 13 RRLWIAQLISNLGDWM-------QTVALAWLVT---QLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQ 82 (524)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 3444444444444433 3334445555 56668889999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHH-----hhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh-
Q psy4866 142 PITTASWIIAMYS-----RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE- 215 (537)
Q Consensus 142 ~l~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~- 215 (537)
++.++..++.++. .+.+.+++.-++.|++.+...|+..+++.|.+|+++...++++.+...++..++||.+++.
T Consensus 83 ~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~L 162 (524)
T PF05977_consen 83 LLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGIL 162 (524)
T ss_pred HHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 8877665554432 3788999999999999999999999999999999999999999999999988888888876
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHH
Q psy4866 216 ---LSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE 292 (537)
Q Consensus 216 ---~~wr~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (537)
+|-.+.|.+.++..++.++....++..+. ++ + ..++. . .+.-+..++-
T Consensus 163 va~~G~~~~f~inalsfl~~i~~l~~~~~~~~----~~---------------~--~~~e~---~-----~~~l~~G~ry 213 (524)
T PF05977_consen 163 VAFFGAAAAFLINALSFLISILALLRWKPPPP----PS---------------S--LPRER---F-----FSALREGLRY 213 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccccc----cc---------------c--cchhh---h-----hhhHHHHHHH
Confidence 47778888887766554444444332110 00 0 00000 0 0000222333
Q ss_pred hhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCC-CChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHH
Q psy4866 293 FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETF-LPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLV 370 (537)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 370 (537)
+.+++..+..++...+..+. ...+...+|.+.++. +.+ ..-++.....+++.++|.++.+++.+|+++++++..
T Consensus 214 v~~~~~l~~~l~~~~~~~l~----~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~ 289 (524)
T PF05977_consen 214 VRSSPPLRSVLLRSFLFNLF----ASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLL 289 (524)
T ss_pred HhcchHHHHHHHHHHHHHHh----hhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHH
Confidence 33233323222222222221 223334567766543 332 223467778899999999999999999999998888
Q ss_pred hhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHH
Q psy4866 371 SSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLG 450 (537)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 450 (537)
+.++.+++++.+++. .+.+...+.+++.|.+...... ...+...+..|++.||++++++.++...+.
T Consensus 290 ~~~~~a~~~~~lal~------------~~~~~~~~~l~l~G~~~~~~~~-~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~ 356 (524)
T PF05977_consen 290 ASLLFALALLLLALS------------PSFWLALIALFLAGAAWIIANS-SLNTLVQLSVPDWVRGRVFSIYQMVFFGGM 356 (524)
T ss_pred HHHHHHHHHHHHhcc------------hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHhHHHHHHHHHHHHHH
Confidence 888888777766653 3445555666666666555443 345788899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccchhhhHhhHHHHHHHHHH
Q psy4866 451 LISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYL 484 (537)
Q Consensus 451 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 484 (537)
.+|..+.|.+.+..|...++.+.++..+++.++.
T Consensus 357 ~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 357 PLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888777666655555544
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-23 Score=188.93 Aligned_cols=362 Identities=15% Similarity=0.118 Sum_probs=267.5
Q ss_pred HHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHH
Q psy4866 65 SFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPIT 144 (537)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~ 144 (537)
|+.+..+.+..+...-..+...|+++++.+ |+|+|.+..|+++++..+...+.+++..+++.|+|.++.+..++++.
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~---~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli 87 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQ---DLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLI 87 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHH---HhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHH
Confidence 445555556667777788889999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHh----hhh-hHH
Q psy4866 145 TASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLG----SEL-SYM 219 (537)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~----~~~-~wr 219 (537)
++|.++-... +.+.++.+-.+.|.|.+...+..+.++.+.||++ -+..++++.+..++|..+++.+. ... +||
T Consensus 88 ~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~ 165 (395)
T COG2807 88 AAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWR 165 (395)
T ss_pred HHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHH
Confidence 9999998887 7888899999999999999999999999999764 79999999999888887775554 344 799
Q ss_pred HHHHHHHHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchH
Q psy4866 220 NYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNM 299 (537)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (537)
....+.+.++++.++.++.-...+ + ....+....+...++|++.-
T Consensus 166 ~aL~~WAl~allAl~~WlPq~~r~---------------------~--------------~~~~~~~~~~~~~vw~~~~a 210 (395)
T COG2807 166 GALGFWALLALLALLIWLPQALRE---------------------Q--------------AASIATKLVSVRKVWRSPLA 210 (395)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccc---------------------c--------------ccccccccccccccccCchh
Confidence 999999999988877765321000 0 00001112222345555554
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhccc-CCcHHHHHhhHHHHH
Q psy4866 300 KAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRA-GRRVLFLVSSAGCSL 377 (537)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~ 377 (537)
|... +++..+...++....|+|.++.+.|.+. +++....+..+.+++.++....+.+|. ++|+.......++.+
T Consensus 211 W~vt----LfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~ 286 (395)
T COG2807 211 WQVT----LFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV 286 (395)
T ss_pred HHHH----HHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 4443 3444444458889999999999999984 566788888999999999999999865 456666666666666
Q ss_pred HHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhcccc-CCccccchhhHHHHHHHHHHHHHHHHH
Q psy4866 378 FSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEY-FSSNMKAVSCAVINILCTTLGLISYKL 456 (537)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~~~~~~ 456 (537)
+.+.+.+.. ...+ +...++++.+.+..+ ++....+... -.++..+.-.|+.+.++++-.+++|.+
T Consensus 287 G~~G~~~~P-----------~~~~--~lw~~llG~G~G~~F-~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l 352 (395)
T COG2807 287 GLVGLLLAP-----------GQLP--ILWALLLGLGQGGAF-PLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWL 352 (395)
T ss_pred HHHHHHHhh-----------hhHH--HHHHHHHhCccchHH-HHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhh
Confidence 666665431 1111 222355555544433 4444444444 345566788899999999999999999
Q ss_pred HHHHHHhhccch-hhhHhhHHHHHHHHHH
Q psy4866 457 FFLMDKHIGMYS-NFLFGGVSSLVCTVYL 484 (537)
Q Consensus 457 ~g~l~~~~g~~~-~~~~~~~~~~~~~~~~ 484 (537)
+|++.|..|.+. .+..+....++..+..
T Consensus 353 ~G~lhDa~gsw~~~~~~l~~~~i~m~i~G 381 (395)
T COG2807 353 FGFLHDATGSWSAPLVLLALATLLMLIFG 381 (395)
T ss_pred HhHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 999999987554 3444444444444433
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.7e-24 Score=211.34 Aligned_cols=405 Identities=11% Similarity=0.028 Sum_probs=251.6
Q ss_pred HhhhhhhhhhccchhhHHhhhcCCCC--CCCCCChhhHHHHHHHHHHhhhhhhhHHhhhh-hhhhHHHHHHHHHHHHHHH
Q psy4866 73 IAAFTTGMSFAWSAPVLEELLSKESP--IPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR-IGRKWSLLMTGPITTASWI 149 (537)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~l~~~~~~ 149 (537)
+..+...+......+.+|.+..+ + +|++..+.+++.+.+.++..++.+++|+++|| +|||++++++.++.+++.+
T Consensus 17 ~~~~~~~~~~~~~~~~L~~yl~~--~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~ 94 (475)
T TIGR00924 17 FVELWERFSYYGMQGILAVYLVQ--QAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHF 94 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--CCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 34555566666667777777552 4 89999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcc---cchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHH
Q psy4866 150 IAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSI---RGTIGTLFQISCHLGILYTYVLGSE----LSYMNYL 222 (537)
Q Consensus 150 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~ 222 (537)
+.+++++++.++++|++.|+|.|...+...++++|++|+++ |+.+.+++..+.++|.++|+.+++. .+|++.|
T Consensus 95 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f 174 (475)
T TIGR00924 95 MLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGF 174 (475)
T ss_pred HHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 99999999999999999999999999999999999998754 8889999999999999999988876 4899999
Q ss_pred HHHHHHHHHHHHHhhccc----CChHHHHHhCCHHHHHHHHH---------------hhcCCChhhHHHHHHH-----HH
Q psy4866 223 TYSLIIPIIFTVTFMFMP----ESPYFYAIKNQEGKAIESLK---------------WLRNKTADQVQSELQI-----IK 278 (537)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~----esp~~l~~~~~~~~a~~~~~---------------~~~~~~~~~~~~~~~~-----~~ 278 (537)
.+.++..++..+.+++.+ +.|+.- .+.+.++...... +...+.. ....-... ..
T Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 252 (475)
T TIGR00924 175 NLAAVGMVIGLLTFFAGRHMLRDIGSVP-DPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVV-IANILLMTVTLAVII 252 (475)
T ss_pred HHHHHHHHHHHHHHHHcccccccCCCCC-CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 998865555444333322 222100 0000000000000 0000000 00000000 00
Q ss_pred HhhhhcccccchHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-C-----CCCChhHHHHHHHHHHHHHh
Q psy4866 279 QNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS-E-----TFLPSDYISILFAIILLVSI 352 (537)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~ 352 (537)
....... +......-+++. ..++..++.....+..+......++.+.++. + ..........+..+..++..
T Consensus 253 ~~~~~~~-~~~~~~~~~~~~--~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~ 329 (475)
T TIGR00924 253 FFFRLAF-KPRLDAVARNKM--YAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGS 329 (475)
T ss_pred HHHHHHH-hccCCHHHHhHH--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHH
Confidence 0000000 000000101111 1122222222222222333333344443332 1 11234456666666666666
Q ss_pred hhHhh----hhcc-cCCcHHH--HHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhh
Q psy4866 353 FPSTY----YIDR-AGRRVLF--LVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPL 425 (537)
Q Consensus 353 ~~~g~----l~d~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (537)
++..+ +.+| .+.+... .++.++.++++..+.+...... .....+.++.+....+.+.+... ..|...++
T Consensus 330 p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~---~~~~~s~~~~i~~~~~~~~ge~~-~~p~~~~~ 405 (475)
T TIGR00924 330 PVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFAD---AGGLTSPWFMVLIYLFQTLGELM-ISPLGLSW 405 (475)
T ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcC---CCCccCHHHHHHHHHHHHHHHHH-HhHHHHHH
Confidence 65443 4443 2223333 6677777777666654311110 00123445555566666666544 55677799
Q ss_pred ccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhHHHHHHHHHHHhhc
Q psy4866 426 LSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFL 488 (537)
Q Consensus 426 ~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 488 (537)
..+..|++.||+.+|+......+|..+++.+.....+..++...+...++++++..++.++..
T Consensus 406 ~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (475)
T TIGR00924 406 WTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMV 468 (475)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888776766777777777777776666654443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=216.76 Aligned_cols=331 Identities=13% Similarity=0.082 Sum_probs=222.9
Q ss_pred hHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhh----hhh-hHHHHHHHHHHHHHHHHHHHHhh------
Q psy4866 88 VLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR----IGR-KWSLLMTGPITTASWIIAMYSRS------ 156 (537)
Q Consensus 88 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr----~Gr-r~~l~~~~~l~~~~~~~~~~~~~------ 156 (537)
..+.+.+ ++|+++.++|++.++..+..++..++.|+++|| +|| |+.++++.++.+++.+++.+.++
T Consensus 22 l~~~~~~---~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~ 98 (437)
T TIGR00792 22 LLFFYTD---VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGK 98 (437)
T ss_pred HHHHHHH---ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchH
Confidence 3455566 899999999999999999999999999999998 687 55777888888888888877654
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhhhhccC-CCcccchhhhHhHHHHHHHHHHHHHHhh-----------hhhHHHHHHH
Q psy4866 157 VLGLYVMRTLQGFSMAAIYVISPMYLGEIS-ETSIRGTIGTLFQISCHLGILYTYVLGS-----------ELSYMNYLTY 224 (537)
Q Consensus 157 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~l~~-----------~~~wr~~~~~ 224 (537)
...+++.+++.+++.+...+...++..|.. ++++|++..++...+..+|..+++.+.. ..+||+.+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i 178 (437)
T TIGR00792 99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALV 178 (437)
T ss_pred HHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHH
Confidence 456677889999998888888888889987 4688999999988888887766544321 2479999998
Q ss_pred HHHHHHHHHHH-hhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHH
Q psy4866 225 SLIIPIIFTVT-FMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFV 303 (537)
Q Consensus 225 ~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (537)
.++++++..+. .+.++|.++. +. . + +.++.+.+..++++++++..+...
T Consensus 179 ~~~l~~~~~~~~~~~~~e~~~~-----~~-------------~--~----------~~~~~~~~~~~~~l~~~~~~~~~~ 228 (437)
T TIGR00792 179 LALIGVVSLIICFFGTKERYSE-----IP-------------K--N----------IEKKLSLKQIFKALFKNDQLLILC 228 (437)
T ss_pred HHHHHHHHHHHHHcCCEecCCC-----CC-------------c--c----------cccCCCHHHHHHHHhCCHHHHHHH
Confidence 88887765544 4556765310 00 0 0 000000122344555544433333
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHH
Q psy4866 304 FMAFLAVFRAFTGVQSIIAYANTIFASSETF-LPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIA 382 (537)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 382 (537)
+..++..+. ......+.+.+.+..... ........+..++.+++.++.+++.||+|+|+.+..+.++.+++.+.+
T Consensus 229 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~ 304 (437)
T TIGR00792 229 LAYLFYNLA----FNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIF 304 (437)
T ss_pred HHHHHHHHH----HHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 333222221 222223333333322111 123345556678889999999999999999999988887777666555
Q ss_pred HHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCC-------ccccchhhHHHHHHHHHHHHHHHH
Q psy4866 383 GLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFS-------SNMKAVSCAVINILCTTLGLISYK 455 (537)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~ 455 (537)
.+. +.+.+...+...+.+.+.+.. .+..+++..|..+ ++.+|.+.|+.+....+|..+++.
T Consensus 305 ~~~-----------~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~ 372 (437)
T TIGR00792 305 FFA-----------GSNLPLILVLIILAGFGQNFV-TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGF 372 (437)
T ss_pred HHc-----------chhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHH
Confidence 432 112233333444444444433 3445677777754 556799999999999999999999
Q ss_pred HHHHHHHhhccc
Q psy4866 456 LFFLMDKHIGMY 467 (537)
Q Consensus 456 ~~g~l~~~~g~~ 467 (537)
+.|.+.+..|+.
T Consensus 373 i~g~ll~~~G~~ 384 (437)
T TIGR00792 373 LVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHcCCC
Confidence 999999987764
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-24 Score=209.52 Aligned_cols=329 Identities=15% Similarity=0.084 Sum_probs=218.0
Q ss_pred hhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhh-----hhhHH-HHHHHHHHHHHHHHHHHH
Q psy4866 81 SFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI-----GRKWS-LLMTGPITTASWIIAMYS 154 (537)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-----Grr~~-l~~~~~l~~~~~~~~~~~ 154 (537)
..+..++.+|.+.+ |+|+|.+++|++.+. .+...+ .+++|+++||+ ||||. ++.+.++.++..++.++.
T Consensus 3 ~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~ 77 (356)
T TIGR00901 3 PLGLVGNTLPYWLR---SKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL 77 (356)
T ss_pred CchhHHhHHHHHHH---HcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC
Confidence 34567788999999 999999999999766 455555 89999999998 89886 567777777777777776
Q ss_pred ---hhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hh--------HH
Q psy4866 155 ---RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LS--------YM 219 (537)
Q Consensus 155 ---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~--------wr 219 (537)
.+.+.+....++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.. .+ ||
T Consensus 78 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr 157 (356)
T TIGR00901 78 VPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWG 157 (356)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccH
Confidence 4666777888889999998999999999999999999999999999999999999888754 46 99
Q ss_pred HHHHHHHHHHHHHHHHhhc-ccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccch
Q psy4866 220 NYLTYSLIIPIIFTVTFMF-MPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSN 298 (537)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~-~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (537)
..|++.++..++..+..++ .||+++. + + +.+++. ++ .+..++++++++.
T Consensus 158 ~~f~i~ai~~l~~~~~~~~~~~e~~~~-----~--------------~--~~~~~~---~~------~~~~~~~~~~~~~ 207 (356)
T TIGR00901 158 YIFFWTALLILPGLLVTLFLAKEPQED-----A--------------S--VPKPLT---QA------VLKPIREFFQRKN 207 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcc-----c--------------c--cchhHH---HH------HHHHHHHHHHhcC
Confidence 9999999887775555443 5664210 0 0 000000 00 0123344444333
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCC-hhHHHHHHH-HHHHHHhhhHhhhhcccCCcHHHHHhhHHHH
Q psy4866 299 MKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLP-SDYISILFA-IILLVSIFPSTYYIDRAGRRVLFLVSSAGCS 376 (537)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 376 (537)
.+..........+ ..........+.|.++++.|.+.. .+......+ +..+++.++++++.||+|+|+.+..+.++.+
T Consensus 208 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~ 286 (356)
T TIGR00901 208 MIQALLLLLLIVL-YKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQA 286 (356)
T ss_pred chHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1222222222222 222344566677887777665422 223333333 5678899999999999999999888887776
Q ss_pred HHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHH
Q psy4866 377 LFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCT 447 (537)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 447 (537)
+...++.+........+. .....+......++.+.+.+... +...++..|.+|+++||+.+|+.+...+
T Consensus 287 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 287 LTNAGFVWLASNGHHDGI-TFPHLLMLFLTITLEAVTGGLGT-VAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHhcCccccc-ccchHHHHHHHHHHHHHHhHHHH-HHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 665544432110000000 00112333333444455544444 4456999999999999999999887654
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-24 Score=213.87 Aligned_cols=400 Identities=11% Similarity=0.017 Sum_probs=239.7
Q ss_pred hhhhhhhhccchhhH-HhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhh-hhhhHHHHHHHHHHHHHHHHHH
Q psy4866 75 AFTTGMSFAWSAPVL-EELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR-IGRKWSLLMTGPITTASWIIAM 152 (537)
Q Consensus 75 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~l~~~~~~~~~ 152 (537)
.+...+.+....+.+ ..+.+ ++|++..+.+++.+.+.....+..+++|+++|| +||||+++++.+++++++++++
T Consensus 23 ~~~er~~~y~~~~~l~~yl~~---~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~ 99 (489)
T PRK10207 23 ELWERFGYYGVQGILAVFFVK---QLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTG 99 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 334444544444444 44455 899999999999999999999999999999999 9999999999999999999999
Q ss_pred HHhhHHH-HHHHHHHHHhHhhhhhhhhhhhhhccCCCc--ccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHH
Q psy4866 153 YSRSVLG-LYVMRTLQGFSMAAIYVISPMYLGEISETS--IRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYS 225 (537)
Q Consensus 153 ~~~~~~~-l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~ 225 (537)
++.+... ++++|+++|+|.|...+...+++.|++|++ +|+++++++..+.++|.+++|.++++ +|||+.|++.
T Consensus 100 ~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~ 179 (489)
T PRK10207 100 MSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLC 179 (489)
T ss_pred HhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 9877554 458999999999999999999999999877 45778999999999999888877765 5999999987
Q ss_pred HHHHHHHHHHhhcccCChHHHH--HhCCHHHHHHH-------------HHhhcCCChhhHHHHHHHH----HH--hhhhc
Q psy4866 226 LIIPIIFTVTFMFMPESPYFYA--IKNQEGKAIES-------------LKWLRNKTADQVQSELQII----KQ--NTSKN 284 (537)
Q Consensus 226 ~~~~~~~~~~~~~~~esp~~l~--~~~~~~~a~~~-------------~~~~~~~~~~~~~~~~~~~----~~--~~~~~ 284 (537)
++..++.++.+++.++..+... .+++..+.... ..+..+.. +........ .. -..++
T Consensus 180 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~f~~~~ 257 (489)
T PRK10207 180 GAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNV--EVANLVLIVLSIVVTIIFFREA 257 (489)
T ss_pred HHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHH
Confidence 6544333333333332110000 00000010000 00000000 000000000 00 00000
Q ss_pred ccccchHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-c-----CCCCChhHHHHHHHHHHHHHhhhHhhh
Q psy4866 285 VERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-S-----ETFLPSDYISILFAIILLVSIFPSTYY 358 (537)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~g~l 358 (537)
. +. .+.+|++...... .++.....+..+......++.+.++ . |....+.....+..+..++..++.+++
T Consensus 258 ~-~~--~~~~r~r~~~~~~--l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l 332 (489)
T PRK10207 258 F-KL--DKTGRNKMFVAFV--LMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGI 332 (489)
T ss_pred h-cC--CHHHHHHHHHHHH--HHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHH
Confidence 0 00 0222222211111 1111111222222333344444442 1 111233344445556677788888999
Q ss_pred hcccCCcH-------HHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCC
Q psy4866 359 IDRAGRRV-------LFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFS 431 (537)
Q Consensus 359 ~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 431 (537)
.||+++|+ .+.++.++.+++++.+........ ..+...+.++.+...++.+.+..+. .+....++.+..|
T Consensus 333 ~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~--~~~~~~s~~~~i~~~~l~g~Ge~~~-~~~g~~~~~~~aP 409 (489)
T PRK10207 333 YTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFA--DAQGLTSPWFIVLVYLFQSLGELFI-SALGLAMIAALVP 409 (489)
T ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCccCHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhCh
Confidence 99999886 366777777766654432111000 0011123444555666666666554 4555688888999
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHH----------hhccchhhhHhhHHHHHHHHHHHhh
Q psy4866 432 SNMKAVSCAVINILCTTLGLISYKLFFLMDK----------HIGMYSNFLFGGVSSLVCTVYLYYF 487 (537)
Q Consensus 432 ~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~----------~~g~~~~~~~~~~~~~~~~~~~~~~ 487 (537)
++.+|.++|+.+...++|+.++..+...... ...+.+.|...++.++++.++.+..
T Consensus 410 ~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~ 475 (489)
T PRK10207 410 QHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALM 475 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887764421 1113455666666666665555443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-25 Score=224.28 Aligned_cols=297 Identities=11% Similarity=0.119 Sum_probs=205.2
Q ss_pred HHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHH
Q psy4866 69 VTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASW 148 (537)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~ 148 (537)
+..++..+...+..++..++++.+.+ +|+++..+.|++.+.+.++++++.++.|++.||+|||+++.++++++++++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek---~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ 112 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIER---RFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGS 112 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhh---hhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHH
Confidence 33445666666777889999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh---------------------------------------------------hHHHHHHHHHHHHhHhhhhhhh
Q psy4866 149 IIAMYSR---------------------------------------------------SVLGLYVMRTLQGFSMAAIYVI 177 (537)
Q Consensus 149 ~~~~~~~---------------------------------------------------~~~~l~~~r~l~G~~~~~~~~~ 177 (537)
+++++.+ .+..++++|+++|+|.+..++.
T Consensus 113 ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~ 192 (633)
T TIGR00805 113 FLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPL 192 (633)
T ss_pred HHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhc
Confidence 9998763 2456789999999999999999
Q ss_pred hhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh--------------------------hHHHHHHHHHHHHHH
Q psy4866 178 SPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL--------------------------SYMNYLTYSLIIPII 231 (537)
Q Consensus 178 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~--------------------------~wr~~~~~~~~~~~~ 231 (537)
..+++.|++|+++|+++++++..+..+|.++|+++++.+ +||..|++.+++.++
T Consensus 193 ~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l 272 (633)
T TIGR00805 193 GISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALL 272 (633)
T ss_pred CchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998887542 277788888888777
Q ss_pred HHHHhhcccCC-hHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHHHHH
Q psy4866 232 FTVTFMFMPES-PYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAV 310 (537)
Q Consensus 232 ~~~~~~~~~es-p~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (537)
..+.++++|++ |+.. .+.+.++.++ ....+.. ++...+ ......+....++.+++++..+. ..+..
T Consensus 273 ~~v~l~~~p~~lp~~~-~~~~~~~~~~--~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~Ll~n~~f~~----~~l~~ 339 (633)
T TIGR00805 273 TSIPFFFFPKALPKEG-KRVNVDVHET--EKLEKSE-DKSRKK-----NSDITKDFPKIIKRLLCNPIYML----VILAQ 339 (633)
T ss_pred HHHHHHhCccccCCcc-cccchhhhhh--hcccccc-cccchh-----hhhhHHHHHHHHHHHHcCcHHHH----HHHHH
Confidence 66656666654 2110 0000000000 0000000 000000 00000000223455666554333 33333
Q ss_pred HHHhhhHHHHHHHHHHHHHhc-CCCC-ChhHHHHHHHH-HHHHHhhhHhhhhcccCC--cHHHHHhhHHHHHHHHH
Q psy4866 311 FRAFTGVQSIIAYANTIFASS-ETFL-PSDYISILFAI-ILLVSIFPSTYYIDRAGR--RVLFLVSSAGCSLFSFI 381 (537)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~~~~~ 381 (537)
+......+.+..|+|.+++.. +.+. .++....+..+ +.+++.+++|+++||++. |+.+..+.++..+..+.
T Consensus 340 ~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 340 VIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 334444677888999999764 4432 23334434443 567899999999999984 45666666555555443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-24 Score=191.24 Aligned_cols=351 Identities=15% Similarity=0.085 Sum_probs=206.6
Q ss_pred CCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhh
Q psy4866 98 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVI 177 (537)
Q Consensus 98 ~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 177 (537)
+.+.+..-.|.+.+.|++.+.+.++.+|.++||+|||++++++++..++..++.+++.||..+++.|++.|+..|-. .+
T Consensus 62 ~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl-~v 140 (451)
T KOG2615|consen 62 PDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL-SV 140 (451)
T ss_pred cccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-HH
Confidence 33445567899999999999999999999999999999999999999999999999999977777799999997755 67
Q ss_pred hhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhhhH------HHHHHH----HHHHHHH-HHHHhhcccCChHHH
Q psy4866 178 SPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSY------MNYLTY----SLIIPII-FTVTFMFMPESPYFY 246 (537)
Q Consensus 178 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~~w------r~~~~~----~~~~~~~-~~~~~~~~~esp~~l 246 (537)
..++++|.+++++|+++++..+..+++|.++||.+|+++.- +++|.. ..++... .....+++|||-.
T Consensus 141 ~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~-- 218 (451)
T KOG2615|consen 141 IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP-- 218 (451)
T ss_pred HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc--
Confidence 89999999999999999999999999999999999988633 112222 2222222 3345677899831
Q ss_pred HHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhcc-chHH--HHHHHHHHHHHHHhhhHHHHHHH
Q psy4866 247 AIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGR-SNMK--AFVFMAFLAVFRAFTGVQSIIAY 323 (537)
Q Consensus 247 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 323 (537)
.+++.++.. +..+......+..+.+ +......+++ +... ...-.+.+..+.....+....++
T Consensus 219 -~rk~~~~~~------------~~~~~~~~~~~~~~~~--~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t 283 (451)
T KOG2615|consen 219 -LRKRNDEHS------------TLQEAADDRLALLKFA--RIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENT 283 (451)
T ss_pred -chhhccccc------------chhhhhhhhhhhcchh--hhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111111110 0000000000000000 0000001111 0000 00111111111111112222222
Q ss_pred HHHHH--HhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccC--CcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcc
Q psy4866 324 ANTIF--ASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAG--RRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPY 398 (537)
Q Consensus 324 ~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (537)
...+ +..+++. +.+......++.+.+.........+|.+ .+-.+.....++.-..+++.. ..
T Consensus 284 -~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~------------~~ 350 (451)
T KOG2615|consen 284 -VLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL------------AR 350 (451)
T ss_pred -HHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc------------cc
Confidence 2333 2234432 3334444445555555544444555544 233333333333333332222 12
Q ss_pred cchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhhhHhhHHH
Q psy4866 399 TSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHI-GMYSNFLFGGVSS 477 (537)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~ 477 (537)
..........+..+...... +-...+.....|.+.||+..|+....+.++-++||.+.|.+..+. +-+.++...+.+.
T Consensus 351 ~~~~l~~~s~l~sf~~A~~v-t~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~L~ 429 (451)
T KOG2615|consen 351 TPVVLYLGSTLKSFSTASVV-TCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGALL 429 (451)
T ss_pred cchhhhHHHHHHHHHHHHhh-HHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHHHH
Confidence 23334444444444444444 334478888899999999999999999999999999998877653 3333444444444
Q ss_pred HHH
Q psy4866 478 LVC 480 (537)
Q Consensus 478 ~~~ 480 (537)
+++
T Consensus 430 ~~~ 432 (451)
T KOG2615|consen 430 LIP 432 (451)
T ss_pred HHH
Confidence 444
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.8e-23 Score=200.35 Aligned_cols=367 Identities=10% Similarity=0.069 Sum_probs=234.5
Q ss_pred HHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHH--HHHHHHHHhhhhhhh-HHhhhhhhhhHHHHHHHHHH-
Q psy4866 69 VTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWV--VAIIEIGNYLSPIPA-GMLVNRIGRKWSLLMTGPIT- 144 (537)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~s~~~~~~~~~~~~~-G~l~dr~Grr~~l~~~~~l~- 144 (537)
+.+....+..|...+...|.+|.+.+ +.|.|.+++|++ .+.+.+...+.++++ ++..||+||||..++.+.+.
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~---~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLR---EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHH
Confidence 34555678899999999999999999 999999999997 466778887888888 45799999988875554332
Q ss_pred HHHHHHHH---HHhh-HHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHh----hhh
Q psy4866 145 TASWIIAM---YSRS-VLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLG----SEL 216 (537)
Q Consensus 145 ~~~~~~~~---~~~~-~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~----~~~ 216 (537)
.+.....+ ...+ ..+++..-++.++..+...+...++..|..++++++.+.+....+..+|.++++.+. ..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~ 160 (390)
T TIGR02718 81 SACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF 160 (390)
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 21222222 1222 334455566666777778888888888999888889888888888889999888544 446
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhcc
Q psy4866 217 SYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGR 296 (537)
Q Consensus 217 ~wr~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (537)
+||..|++.+++.++..+..++++|+++ .+. ++ . ++...++++.+|+
T Consensus 161 gw~~~f~~~a~l~~~~~~~~~~~~~~~~-----~~~------------~~--~--------------~~~~~~~~~~l~~ 207 (390)
T TIGR02718 161 GQRPAFLLVACVPLASLVCVLWLKDRAV-----ASP------------EA--P--------------LARRASLFRFFRR 207 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCc-----Ccc------------cc--c--------------hhhHHHHHHHHcC
Confidence 9999999999888765555555443320 000 00 0 0001234556665
Q ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCC-hhHHHHHHH-HHHHHHhhhHhhhhcccCCcHHHHHhhHH
Q psy4866 297 SNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLP-SDYISILFA-IILLVSIFPSTYYIDRAGRRVLFLVSSAG 374 (537)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 374 (537)
+..+......++.... ......+.+.++.+.|.+.+ .+......+ ...+++.++.|++.||+++|+.+..+..+
T Consensus 208 ~~~~~~~~~~~l~~~~----~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~ 283 (390)
T TIGR02718 208 PLAWSLLALALLSAMT----AVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGL 283 (390)
T ss_pred cCHHHHHHHHHHHHHH----HHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5444433333333222 33444566777777776532 334334443 45667788999999999999998877665
Q ss_pred HHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCc-cccchhhHHHHHHHHHHHHHH
Q psy4866 375 CSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSS-NMKAVSCAVINILCTTLGLIS 453 (537)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~~~~~g~~~~ 453 (537)
.++..+.......... ............+.+...+..... ..+...+..++ +.+++.+++.+...++|..++
T Consensus 284 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g 356 (390)
T TIGR02718 284 AGSLALLWFAQAAFWL------APGIAVAWSCSAFGSLITGITSVA-IYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIA 356 (390)
T ss_pred HHHHHHHHHHHHHccc------CCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcccchHHHHHHHHHHHHHHHHHH
Confidence 5333222221110000 011111111112222223333222 33454555554 788999999999999999999
Q ss_pred HHHHHHHHHhhccchhhhHhhHHHHHHHH
Q psy4866 454 YKLFFLMDKHIGMYSNFLFGGVSSLVCTV 482 (537)
Q Consensus 454 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 482 (537)
|.+.|.+.|..|+...|.+.+++.+++.+
T Consensus 357 ~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 357 SSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 99999999999988888777666666544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-22 Score=195.36 Aligned_cols=388 Identities=15% Similarity=0.172 Sum_probs=254.2
Q ss_pred hhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhh----hhhhhHHHHHH-HHHHHHHHHHHHH
Q psy4866 79 GMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVN----RIGRKWSLLMT-GPITTASWIIAMY 153 (537)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~d----r~Grr~~l~~~-~~l~~~~~~~~~~ 153 (537)
.+..+...+.++.+.+ ++|.+..+.+++..+..+...+.+++.|+++| |+||||.++++ .+..+++.++.++
T Consensus 17 q~~~~l~~~~l~~yl~---~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~ 93 (477)
T TIGR01301 17 QFGWALQLSLLTPYVQ---ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGF 93 (477)
T ss_pred HHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 4445555666667777 89999999999999999999999999999999 59999988774 6666677777777
Q ss_pred HhhHH-----------------HHHHHHHHHHhHhhhhhhhhhhhhhccCCCccc--chhhhHhHHHHHHHHHHHHHHhh
Q psy4866 154 SRSVL-----------------GLYVMRTLQGFSMAAIYVISPMYLGEISETSIR--GTIGTLFQISCHLGILYTYVLGS 214 (537)
Q Consensus 154 ~~~~~-----------------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~i~~~l~~ 214 (537)
++++. .++++-.+..++.....+...+++.|.+|+++| +.+.++.+...++|.++++.+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~ 173 (477)
T TIGR01301 94 AADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGA 173 (477)
T ss_pred CchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76643 223333444557788888899999999998765 68999999999999999998886
Q ss_pred hh-------------------hHHHHHHHHHHHHHHHH-HHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHH
Q psy4866 215 EL-------------------SYMNYLTYSLIIPIIFT-VTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSEL 274 (537)
Q Consensus 215 ~~-------------------~wr~~~~~~~~~~~~~~-~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 274 (537)
.. +.|..|++.++..++.. +..+.++|.|... .++.++ ++.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~~~~~~-----------------~~~ 234 (477)
T TIGR01301 174 YSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG--SDDFIN-----------------SEA 234 (477)
T ss_pred HHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc--cccchh-----------------hhc
Confidence 53 44678888887776655 4455678876210 000000 000
Q ss_pred HHHHHhhhhcccccchHHhhc-cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC--C-------Ch----hHH
Q psy4866 275 QIIKQNTSKNVERTNFREFMG-RSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETF--L-------PS----DYI 340 (537)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~----~~~ 340 (537)
+ + .++...+..++++++ -+...+.+...++..++.+.+...+..|.+.++.+.-+. . +. .+.
T Consensus 235 ~---~-~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~ 310 (477)
T TIGR01301 235 A---P-PSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFG 310 (477)
T ss_pred c---c-ccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHH
Confidence 0 0 000000122334433 111122233333334444445666667777766542111 1 11 134
Q ss_pred HHHHHHHHHHHhhhHhhhhcccCC-cHHHHHhhHHHHHHHHHHHHHHHhhhcc-ccC------Cccc--chhhHHHHHHH
Q psy4866 341 SILFAIILLVSIFPSTYYIDRAGR-RVLFLVSSAGCSLFSFIAGLYYYVTIEL-QYE------IPYT--SWVPFLSISLL 410 (537)
Q Consensus 341 ~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~--~~~~~~~~~~~ 410 (537)
....++...+.+++..++.+|+|+ |+....+.++.++++....+.....+.. ..+ .+.. .+..++...++
T Consensus 311 l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 390 (477)
T TIGR01301 311 LMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAIL 390 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHh
Confidence 455666666777788889999985 6776888777777777665443211000 000 0000 24555666667
Q ss_pred HHHHhhccccchhhhccccCCc--cccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc--chhhhHhhHHHHHHHHHHHh
Q psy4866 411 GVFFNLGFGPLFTPLLSEYFSS--NMKAVSCAVINILCTTLGLISYKLFFLMDKHIGM--YSNFLFGGVSSLVCTVYLYY 486 (537)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~--~~~~~~~~~~~~~~~~~~~~ 486 (537)
|..+... ..++++++++..++ +..|..+|+.|.+..+.+.+.....|.+.+..|. ..++.+.++..+++.++.++
T Consensus 391 Gi~~A~~-~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~ 469 (477)
T TIGR01301 391 GIPLAIT-YSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALI 469 (477)
T ss_pred hHHHHHH-HHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHH
Confidence 7776654 46788999999885 4559999999999999999999988987776663 35667778888888888888
Q ss_pred hccCCCC
Q psy4866 487 FLLETKG 493 (537)
Q Consensus 487 ~~~~~~~ 493 (537)
.+|+.+.
T Consensus 470 ~~~~~~~ 476 (477)
T TIGR01301 470 LLPRPRV 476 (477)
T ss_pred hCCCCCC
Confidence 8887653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-22 Score=200.33 Aligned_cols=394 Identities=11% Similarity=0.038 Sum_probs=226.1
Q ss_pred hhhhhhhccchhhHHhh-hcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhh-hhhhHHHHHHHHHHHHHHHHHHH
Q psy4866 76 FTTGMSFAWSAPVLEEL-LSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR-IGRKWSLLMTGPITTASWIIAMY 153 (537)
Q Consensus 76 ~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~l~~~~~~~~~~ 153 (537)
+...+......+.++.+ .+ ++|++..+.+++.+.+........+++|+++|| +|||++++++.++.+++.+++++
T Consensus 31 ~~~~~~~y~~~~~l~~yl~~---~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~ 107 (500)
T PRK09584 31 LWERFGYYGLQGIMAVYLVK---QLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAW 107 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444 46 899999999999988887777777899999999 59999999999999999999988
Q ss_pred Hh-hHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcc--cchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHH
Q psy4866 154 SR-SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSI--RGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSL 226 (537)
Q Consensus 154 ~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~ 226 (537)
++ +.+.++++|+++|+|.|...+...+++.|++|+++ |..++++++.+.++|..++|.++++ +|||+.|++.+
T Consensus 108 ~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 108 SGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV 187 (500)
T ss_pred hcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 75 56677788999999999988999999999998654 4567888889999999999888866 48999999987
Q ss_pred HHHHHHHHHhh----cccCChHHHHHhCCHHHHHHH------------HHhhcCCChhhHHHHHHHHHHhhhhcccccch
Q psy4866 227 IIPIIFTVTFM----FMPESPYFYAIKNQEGKAIES------------LKWLRNKTADQVQSELQIIKQNTSKNVERTNF 290 (537)
Q Consensus 227 ~~~~~~~~~~~----~~~esp~~l~~~~~~~~a~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (537)
+..++.++.++ .++|.++- ..+.+.+..... ........ +.............. ....
T Consensus 188 i~~~i~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~ 261 (500)
T PRK09584 188 VGMLITVVNFAFCQRWVKQYGSK-PDFEPINYRKLLLTIVGVVALIAIATWLLHNQ-EIARMALGVVALGIV----VIFG 261 (500)
T ss_pred HHHHHHHHHHHHhHHHhccCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHH----HHHH
Confidence 65544333222 23332100 000000100000 00000000 000000000000000 0000
Q ss_pred HHh--hccchHHHHHHHH--HHHHHHHhhhHHHHHHHHHHHHHh-----c-----CCCCChhHHHHHHHHHHHHHhhhH-
Q psy4866 291 REF--MGRSNMKAFVFMA--FLAVFRAFTGVQSIIAYANTIFAS-----S-----ETFLPSDYISILFAIILLVSIFPS- 355 (537)
Q Consensus 291 ~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~- 355 (537)
++. .++..+++.+... ++.... ++......+..+.. . |..........+..+..++..++.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~i~----f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~ 337 (500)
T PRK09584 262 KEAFAMKGAARRKMIVAFILMLEAII----FFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILA 337 (500)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHH----HHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHH
Confidence 000 0011111111111 111111 22222222333221 1 111234455555565555555555
Q ss_pred ---hhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCc
Q psy4866 356 ---TYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSS 432 (537)
Q Consensus 356 ---g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 432 (537)
+++.+|.+..+.+.+++++.+++++.+........ .....+.++.+...++.+.+.. ...|....++.+..|+
T Consensus 338 ~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~---~~~~vs~~~~~~~~~l~~~ge~-~~~p~g~s~~~~~aP~ 413 (500)
T PRK09584 338 AIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFAN---DAGIVSVNWLIASYGLQSIGEL-MISGLGLAMVAQLVPQ 413 (500)
T ss_pred HHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCccCHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCcH
Confidence 55555655667788888888888877665432111 0001123344445555555544 4567777999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHH----------hhccchhhhHhhHHHHHHHHHHHh
Q psy4866 433 NMKAVSCAVINILCTTLGLISYKLFFLMDK----------HIGMYSNFLFGGVSSLVCTVYLYY 486 (537)
Q Consensus 433 ~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~----------~~g~~~~~~~~~~~~~~~~~~~~~ 486 (537)
+.||+.+|+......+|..++..+.+.... ..++...|...++.+++..++.+.
T Consensus 414 ~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 414 RLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998877777777776666542211 113556676677666655544433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-21 Score=184.91 Aligned_cols=366 Identities=16% Similarity=0.164 Sum_probs=246.5
Q ss_pred hhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhh-hhHHHHHHHHHHHHHHHHHHH
Q psy4866 75 AFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIG-RKWSLLMTGPITTASWIIAMY 153 (537)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G-rr~~l~~~~~l~~~~~~~~~~ 153 (537)
.|+..+..+...|.++.+.+ +.|.|..|+|.+.+...+...++++++|.++||++ +|+++.+..++.++...+...
T Consensus 11 ~f~~f~~~G~~~p~~~~~L~---~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~ 87 (400)
T PF03825_consen 11 YFLYFFAYGAFLPYLPLYLE---SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF 87 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566677888899999 89999999999999999999999999999999987 688888888888777777778
Q ss_pred HhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHH-----HhhhhhH---HHHHHHH
Q psy4866 154 SRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYV-----LGSELSY---MNYLTYS 225 (537)
Q Consensus 154 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~-----l~~~~~w---r~~~~~~ 225 (537)
.++++.+++.-++..+......|...++..+...+ ++.-.+-.-...++|.+++.. +.+..++ ...+++.
T Consensus 88 ~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~ 165 (400)
T PF03825_consen 88 SSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIA 165 (400)
T ss_pred hccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHH
Confidence 88999998888888888888888888888887753 233334444444444444422 2222222 2455666
Q ss_pred HHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHH
Q psy4866 226 LIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFM 305 (537)
Q Consensus 226 ~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (537)
+...++.....+.+|+.|.- + +. ++..++....+..+++|++.....++.
T Consensus 166 ~~~~~ll~~~~l~lp~~~~~---~-~~--------------------------~~~~~~~~~~~~~~llk~~~~~~Fll~ 215 (400)
T PF03825_consen 166 AILSLLLAGFALFLPKTPPK---R-SA--------------------------KESVKKLLGLDALKLLKNPRFLVFLLA 215 (400)
T ss_pred HHHHHHHHHHHHhCCCCccc---c-cc--------------------------CCCcccccchHHHHHhcCccHHHHHHH
Confidence 65555555555667876510 0 00 000000011223456665554433333
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcC-CCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHH
Q psy4866 306 AFLAVFRAFTGVQSIIAYANTIFASSE-TFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAG 383 (537)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 383 (537)
.++... .......|.+.++++.| ... ..+....+..+..++.-...+++..|+|.++++.++.+..++-..+++
T Consensus 216 ~~l~~~----~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a 291 (400)
T PF03825_consen 216 AFLIGI----SHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYA 291 (400)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 333322 24556777788888887 332 334555666778889999999999999999999999999888887776
Q ss_pred HHHHhhhccccCCcccchhhHHH----HHHHHHHHhhccccchhhhccccCCccccchhhHHHHHH-HHHHHHHHHHHHH
Q psy4866 384 LYYYVTIELQYEIPYTSWVPFLS----ISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINIL-CTTLGLISYKLFF 458 (537)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~g 458 (537)
.. +++.+..... ..+.+..++..+.. ...++.+..|++.|+++.++.+.. ..+|..++..+.|
T Consensus 292 ~~-----------~~~~~~~~~~~~l~q~lhG~tf~~~~~a-~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG 359 (400)
T PF03825_consen 292 YF-----------SDPWPFIVALQLLGQLLHGLTFGLFHAA-SVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGG 359 (400)
T ss_pred Hh-----------cCCcHHHHHHHHHHHhhhhHHHHHHHHH-HHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 63 1222222222 23466666665544 448999999999999999998875 5799999999999
Q ss_pred HHHHhhccchh------hhHhhHHHHHHHHHHHhhccCC
Q psy4866 459 LMDKHIGMYSN------FLFGGVSSLVCTVYLYYFLLET 491 (537)
Q Consensus 459 ~l~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~ 491 (537)
++.|+.|.+.. +.+.+++.++..++.+++.|++
T Consensus 360 ~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 360 WLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 99999876543 3344444444444444444443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-21 Score=192.15 Aligned_cols=351 Identities=13% Similarity=0.054 Sum_probs=212.9
Q ss_pred hhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhh----hhhh-hHHHHHHHHHHHHHH
Q psy4866 74 AAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVN----RIGR-KWSLLMTGPITTASW 148 (537)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~d----r~Gr-r~~l~~~~~l~~~~~ 148 (537)
+.+..++......+.++.+..+ .+|++..++|.+..+..+.-++..++.|+++| |+|| |+.++++.+..+++.
T Consensus 14 g~~~~~~~~~~~~~~l~~yyt~--v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~ 91 (473)
T PRK10429 14 GAFGKDFAIGIVYMYLMYYYTD--VVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVL 91 (473)
T ss_pred chhHHhHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHH
Confidence 3333444444455544444432 67999999999999999999999999999999 5697 777778888888776
Q ss_pred HHHHHHh------hHHHHHHHHHHHHhHhhhhhhhhhhhhhccC-CCcccchhhhHhHHHHHHHHHHHHHHhh----h--
Q psy4866 149 IIAMYSR------SVLGLYVMRTLQGFSMAAIYVISPMYLGEIS-ETSIRGTIGTLFQISCHLGILYTYVLGS----E-- 215 (537)
Q Consensus 149 ~~~~~~~------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~l~~----~-- 215 (537)
+++-..+ .+..+++..++.+++.....+...+++.|.. ++++|.+..++-..+.++|..+.+.+.. .
T Consensus 92 ~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g 171 (473)
T PRK10429 92 FLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVG 171 (473)
T ss_pred HHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6554433 1345666677788888888888999999998 5888999988866666666554433321 1
Q ss_pred -----hhHHHHHHHHHHHHHHHHH-HhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccc
Q psy4866 216 -----LSYMNYLTYSLIIPIIFTV-TFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTN 289 (537)
Q Consensus 216 -----~~wr~~~~~~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (537)
.+|+....+.+++.++..+ ..+..+|.+.. . .. + .+..++.+.+..
T Consensus 172 ~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~-------------------~---~~--~----~~~~~~~~~~~~ 223 (473)
T PRK10429 172 GGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSS-------------------D---NQ--V----SAEGSHLTLKDI 223 (473)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCc-------------------c---cc--c----cccccCCCHHHH
Confidence 2466666666666555333 33345654200 0 00 0 000000000222
Q ss_pred hHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHHHhhhHhhhhcccCCcHHH
Q psy4866 290 FREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLP-SDYISILFAIILLVSIFPSTYYIDRAGRRVLF 368 (537)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 368 (537)
++.+++++.++..+...++.. ........+.+.+.+....... .........++.+++.++.+++.||+|+|+.+
T Consensus 224 ~~~~~~n~~~~~ll~~~~~~~----~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~ 299 (473)
T PRK10429 224 VALIYKNDQLSCLLGMALAYN----IASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILW 299 (473)
T ss_pred HHHHhcCHHHHHHHHHHHHHH----HHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 233333333222222222222 2233333444444333322211 22344445678888999999999999999998
Q ss_pred HHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCC-------ccccchhhHH
Q psy4866 369 LVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFS-------SNMKAVSCAV 441 (537)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~ 441 (537)
..+..+..++.+.+....... +...+..++...+.+.+.+... +..+++.+|..+ .+..|..+|.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~l~g~~~~~~~-~~~~am~ad~id~~e~~tG~R~~G~~~s~ 371 (473)
T PRK10429 300 AGASIFPVLSCGVLLLMGLAA-------PHNALLIVIAGILLNIGTALFW-VLQVIMVADTVDYGEYKLGIRCESIAYSV 371 (473)
T ss_pred HHHHHHHHHHHHHHHHHhccC-------chhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhHhcCccchhHHHHH
Confidence 887776555554443221111 1223333444444445544433 445678888855 3345668899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q psy4866 442 INILCTTLGLISYKLFFLMDKHIGM 466 (537)
Q Consensus 442 ~~~~~~~g~~~~~~~~g~l~~~~g~ 466 (537)
..++..++..+++.+.|.+.+..|+
T Consensus 372 ~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 372 QTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999988776
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-20 Score=169.96 Aligned_cols=390 Identities=14% Similarity=0.135 Sum_probs=261.9
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHH
Q psy4866 57 LHTVLFLFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWS 136 (537)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~ 136 (537)
..+...++|+++++.++..+.+++..-.++++...... .++ +....-|+.-+|++.+....+++-|+.|++|-|..
T Consensus 36 ~~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~---~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a 111 (480)
T KOG2563|consen 36 GHRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNS---FYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTA 111 (480)
T ss_pred ccccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHH---Hhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHH
Confidence 34566789999999999999999888888888888877 778 77788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh------hHH--HHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHH
Q psy4866 137 LLMTGPITTASWIIAMYSR------SVL--GLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILY 208 (537)
Q Consensus 137 l~~~~~l~~~~~~~~~~~~------~~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i 208 (537)
.+++..+.++|..+-..+. .++ ....+..+.+.++-........+..-||++++|..+..+-.++..+|.++
T Consensus 112 ~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvav 191 (480)
T KOG2563|consen 112 LLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAV 191 (480)
T ss_pred HHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHH
Confidence 9999999999998877653 344 66688888888887777777788888999999999999988888888888
Q ss_pred HHHHhhh----------hhHHH--HHHHHHHHHHHHHH-HhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHH
Q psy4866 209 TYVLGSE----------LSYMN--YLTYSLIIPIIFTV-TFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQ 275 (537)
Q Consensus 209 ~~~l~~~----------~~wr~--~~~~~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (537)
+.++... ..|.. .|+....++.+.++ ..+..++.|+. ++...
T Consensus 192 g~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~t-------------------------Pps~s 246 (480)
T KOG2563|consen 192 GFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPT-------------------------PPSAS 246 (480)
T ss_pred HhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-------------------------CCchh
Confidence 7766543 24544 35544444433332 22333333310 00000
Q ss_pred HHHHhhhhcccccchHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHHHHHhhh
Q psy4866 276 IIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETF-LPSDYISILFAIILLVSIFP 354 (537)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 354 (537)
.. ...+..-..+.+..++++.+....+...+ ....++.....+...+...+++ ..+++......+++++++.+
T Consensus 247 ~~--~~~~~~f~~si~~~~~n~~F~il~~~ygi----~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~ 320 (480)
T KOG2563|consen 247 QA--ALQDASFPKSIKSCFKNRQFIILAICYGI----GLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALA 320 (480)
T ss_pred Hh--hhhcCcHHHHHHHHHcCccHHHHHHHHhh----hHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHH
Confidence 00 00011124566777776664433333333 3333555555555444444444 36778888899999999999
Q ss_pred HhhhhcccCCcHH-HHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCcc
Q psy4866 355 STYYIDRAGRRVL-FLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSN 433 (537)
Q Consensus 355 ~g~l~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 433 (537)
+|.+.||.+.-+. .++......++...+.... .. ....+.......+++. ++.+..|+.+-+..|..-|.
T Consensus 321 ~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t-~~-------~~~~viv~~t~~~~g~-~~~~~~Pig~ElgvE~TyPv 391 (480)
T KOG2563|consen 321 SGIIADKTKKFKLTTLVLYLFALVGTLMLLTCT-LF-------LGDSVIVFTTCGLLGF-FGTGYLPIGFELGVETTYPV 391 (480)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh-cc-------CCceEehhhhHHHHHH-hhcCCCCcceeeeeeecccc
Confidence 9999999876544 3333333333321111111 00 1233344444444444 45667788888889986556
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc----cchhhhHhhHHHHHHHHHHHhhccC
Q psy4866 434 MKAVSCAVINILCTTLGLISYKLFFLMDKHIG----MYSNFLFGGVSSLVCTVYLYYFLLE 490 (537)
Q Consensus 434 ~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (537)
.-++..|+.+..+++-+++-..+.+...+..+ +...-+.....+.+.+++..++.++
T Consensus 392 ~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~ 452 (480)
T KOG2563|consen 392 AEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPD 452 (480)
T ss_pred CCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhh
Confidence 67999999999999999999999998888766 4433444455555555555444333
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-21 Score=166.84 Aligned_cols=374 Identities=13% Similarity=0.066 Sum_probs=242.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhh-hhhhHHHHHH
Q psy4866 62 FLFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR-IGRKWSLLMT 140 (537)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~ 140 (537)
.++...++..|+..|-..+++........++.. |.+++.++..++.+.|+....+-+.++|++.|| +|-|..-++-
T Consensus 40 ~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~---d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~ 116 (459)
T KOG4686|consen 40 GHRFMALVFMCLLGFGSYFCYDAPGALQIDFKL---DSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIIL 116 (459)
T ss_pred hhHHHHHHHHHHhcccceeecCCchhhhhhhhc---ccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHH
Confidence 356677778888888889999988888888888 899999999999999999999999999999997 7877666665
Q ss_pred HHHHHHHHHHHH---HHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh--
Q psy4866 141 GPITTASWIIAM---YSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE-- 215 (537)
Q Consensus 141 ~~l~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~-- 215 (537)
+....+|.++++ ..+.+|+++++||+.|+|.-...++-+.++.-|+..|+.+.++++.....-+|..+-..+.++
T Consensus 117 ~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly 196 (459)
T KOG4686|consen 117 CIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLY 196 (459)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHH
Confidence 556667777665 467999999999999999888888899999999999999999999998888887644333222
Q ss_pred --hhH------HHHH---H-HHHHHHHHHHHHhhcccCChHHHHHhCC-HHHHHHHHHhhcCCChhhHHHHHHHHHHhhh
Q psy4866 216 --LSY------MNYL---T-YSLIIPIIFTVTFMFMPESPYFYAIKNQ-EGKAIESLKWLRNKTADQVQSELQIIKQNTS 282 (537)
Q Consensus 216 --~~w------r~~~---~-~~~~~~~~~~~~~~~~~esp~~l~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (537)
++- +... . +....+...++....+ +- +++|++.+.+-.+
T Consensus 197 ~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~l----------g~~D~rAerilh~e~g------------------ 248 (459)
T KOG4686|consen 197 DTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSL----------GLSDDRAERILHLEEG------------------ 248 (459)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHh----------hhhhhHHHHHHhhhcC------------------
Confidence 110 0000 0 0001111111111000 00 0111111111000
Q ss_pred hcccccchHHhhc-cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCCC-ChhHHHHHHHHHHHHHhhhHhhhh
Q psy4866 283 KNVERTNFREFMG-RSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYI 359 (537)
Q Consensus 283 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~ 359 (537)
...+.....+... .+.+|...+.+.+.... ...+....|.++++ .|.+. .++.+.........+..++.|.++
T Consensus 249 ~~Ge~pkLtdv~~f~ppfw~~~iicv~yyva----~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~ 324 (459)
T KOG4686|consen 249 FLGEEPKLTDVNTFYPPFWVLVIICVLYYVA----WFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAIS 324 (459)
T ss_pred cccCCcccccccccCccHHHHHHHHHHHHHH----HHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhH
Confidence 0000111122222 23333333333333322 33444445666654 46663 344556666677778888999999
Q ss_pred cccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhh
Q psy4866 360 DRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSC 439 (537)
Q Consensus 360 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 439 (537)
||+|++...+.+..+..+..-....+ ..+.+...+.+++..+..... ..|..++-+.|.+..|++.
T Consensus 325 Dk~G~n~~wv~~a~~~tl~~H~~l~F-------------t~lsPy~~m~~lGLsysllAc-slWP~va~~vpE~qLGTay 390 (459)
T KOG4686|consen 325 DKYGFNLWWVASACILTLLGHSGLFF-------------TFLSPYTSMTFLGLSYSLLAC-SLWPCVASLVPEEQLGTAY 390 (459)
T ss_pred hhhcceehhHHHHHHHHHHHhhhHHh-------------hhccHHHHHHHHhhhHHHHHH-HHhhhhhhhCCHHHhcchH
Confidence 99999977766655554444333332 233455666666766655432 2467778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-ch---hhhHhhHHHHHHHHHH
Q psy4866 440 AVINILCTTLGLISYKLFFLMDKHIGM-YS---NFLFGGVSSLVCTVYL 484 (537)
Q Consensus 440 g~~~~~~~~g~~~~~~~~g~l~~~~g~-~~---~~~~~~~~~~~~~~~~ 484 (537)
|.++.+.++|-++.|.+.|.+.|..|. .+ .|++.+.+++.+..+.
T Consensus 391 gf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil 439 (459)
T KOG4686|consen 391 GFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGIL 439 (459)
T ss_pred HHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997762 22 2334444444444443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-19 Score=180.97 Aligned_cols=329 Identities=12% Similarity=0.086 Sum_probs=209.8
Q ss_pred hHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhh----hhh-hHHHHHHHHHHHHHHHHHHHHhh------
Q psy4866 88 VLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR----IGR-KWSLLMTGPITTASWIIAMYSRS------ 156 (537)
Q Consensus 88 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr----~Gr-r~~l~~~~~l~~~~~~~~~~~~~------ 156 (537)
+...+.+ ++|++..++|.+.++..+..++..++.|+++|| +|| |+.++.+.+..+++.++....++
T Consensus 32 l~~~~t~---~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~ 108 (444)
T PRK09669 32 LAYFYTD---VFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGK 108 (444)
T ss_pred HHHHHHH---hcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchH
Confidence 3455556 899999999999999999999999999999999 786 56677787877777766555443
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhhhhccC-CCcccchhhhHhHHHHHHHHHHHHHHh----hh-------hhHHHHHHH
Q psy4866 157 VLGLYVMRTLQGFSMAAIYVISPMYLGEIS-ETSIRGTIGTLFQISCHLGILYTYVLG----SE-------LSYMNYLTY 224 (537)
Q Consensus 157 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~l~----~~-------~~wr~~~~~ 224 (537)
+..+++..++.+.+.........++..|+. ++++|++..++...+..+|..+++.+. .. .+|+..+.+
T Consensus 109 ~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i 188 (444)
T PRK09669 109 IIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMV 188 (444)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence 456666777777777777777889999998 457799888888777777776665432 21 367877777
Q ss_pred HHHHHHHHHHH-hhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHH
Q psy4866 225 SLIIPIIFTVT-FMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFV 303 (537)
Q Consensus 225 ~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (537)
.++++++..+. ++..+|.+. + + +.++.+.+..++.+++++.++..+
T Consensus 189 ~~ii~~v~~~~~~~~~~e~~~---------------------~--~----------~~~~~~~~~~~~~~~~n~~~~~l~ 235 (444)
T PRK09669 189 MGLLGVVLFFCCFFMTKERYT---------------------P--E----------VDNSSSVWKDLKLLLGNSQWRIMF 235 (444)
T ss_pred HHHHHHHHHHHHhCCeEEecC---------------------C--C----------CcCCCCHHHHHHHHhCCchHHHHH
Confidence 77776654443 333444310 0 0 000001133455566655555444
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHH
Q psy4866 304 FMAFLAVFRAFTGVQSIIAYANTIFASSETFLP-SDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIA 382 (537)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 382 (537)
...++..... .........+.+......+ .........+..+++.++.+++.||+|+|+.+..+.++..+..+.+
T Consensus 236 ~~~~~~~~~~----~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~ 311 (444)
T PRK09669 236 IFNVVLLTAV----VTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALI 311 (444)
T ss_pred HHHHHHHHHH----HHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 4333322221 1111222222222111111 1233344556777888899999999999999887776555433322
Q ss_pred HHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCC-------ccccchhhHHHHHHHHHHHHHHHH
Q psy4866 383 GLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFS-------SNMKAVSCAVINILCTTLGLISYK 455 (537)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~ 455 (537)
.+. .+++.+..++...+.+.+.+. ..+..+++++|..+ .+..|...|+.+.+..+|.++++.
T Consensus 312 ~~~----------~~~~~~~~~~~~~i~g~~~~~-~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~ 380 (444)
T PRK09669 312 FFI----------PPSNVWLIFALNILFNFIQNL-TTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGA 380 (444)
T ss_pred HHh----------CcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHH
Confidence 221 012333344444555555554 34566788888875 334466788999999999999999
Q ss_pred HHHHHHHhhccc
Q psy4866 456 LFFLMDKHIGMY 467 (537)
Q Consensus 456 ~~g~l~~~~g~~ 467 (537)
+.|.+.+..|+.
T Consensus 381 i~g~ll~~~Gy~ 392 (444)
T PRK09669 381 VVGWILAWVDYV 392 (444)
T ss_pred HHHHHHHHcCCC
Confidence 999999988873
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-18 Score=170.90 Aligned_cols=373 Identities=12% Similarity=0.049 Sum_probs=206.7
Q ss_pred hhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhh-hhhHHHHHHHHHHHHHHHHHHHHh-h
Q psy4866 79 GMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI-GRKWSLLMTGPITTASWIIAMYSR-S 156 (537)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~l~~~~~~~~~~~~-~ 156 (537)
.+........+|.+..+ ++|+++.+.+.+.+.+.....++.+++|+++||+ ||||+++++.++.+++.++.+... +
T Consensus 22 ~fs~Yg~~~~L~~yL~~--~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~ 99 (493)
T PRK15462 22 YFSFYGMRALLILYLTN--QLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIH 99 (493)
T ss_pred HHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33333344555555432 6899999999999999999999999999999999 999999999999999988776543 2
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCc--ccchhhhHhHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHH
Q psy4866 157 VLGLYVMRTLQGFSMAAIYVISPMYLGEISETS--IRGTIGTLFQISCHLGILYTYVLGSEL----SYMNYLTYSLIIPI 230 (537)
Q Consensus 157 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~i~~~l~~~~----~wr~~~~~~~~~~~ 230 (537)
...+.++..+.++|.|...+...++++|.+|++ +|..++++...+.++|..++|.+.+++ +|++.|.+.++..+
T Consensus 100 ~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~ 179 (493)
T PRK15462 100 PSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMI 179 (493)
T ss_pred hhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHH
Confidence 233444444555666777777788999999875 689999999999999999999988764 89999998776444
Q ss_pred HHHHHhhcccCChHHHHHh----CCHHHHHHHHHhhc----CCChh--hHH-HHHH-HHHHhh-hhcc-cc-c----chH
Q psy4866 231 IFTVTFMFMPESPYFYAIK----NQEGKAIESLKWLR----NKTAD--QVQ-SELQ-IIKQNT-SKNV-ER-T----NFR 291 (537)
Q Consensus 231 ~~~~~~~~~~esp~~l~~~----~~~~~a~~~~~~~~----~~~~~--~~~-~~~~-~~~~~~-~~~~-~~-~----~~~ 291 (537)
+.++.+++..+. +.+. .++.+.++...... -.... -.. .... ...... .... .. . -.+
T Consensus 180 l~li~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (493)
T PRK15462 180 AGLVIFLCGNRH---FTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYR 256 (493)
T ss_pred HHHHHHHHhhhh---hccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443333221110 0000 00000000000000 00000 000 0000 000000 0000 00 0 000
Q ss_pred HhhccchHHHH--HHHHHHHHHHHhhh----HHHHHHHHHHHHHhc--CCCCChhHHHHHHHHHHHHHhhhHhhhhcccC
Q psy4866 292 EFMGRSNMKAF--VFMAFLAVFRAFTG----VQSIIAYANTIFASS--ETFLPSDYISILFAIILLVSIFPSTYYIDRAG 363 (537)
Q Consensus 292 ~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 363 (537)
.-.++..+++. .+..++.....+.. ...+..|.....+.. |+..++.+...+..+..++.+++..++-.|..
T Consensus 257 ~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~ 336 (493)
T PRK15462 257 KAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESV 336 (493)
T ss_pred hcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHh
Confidence 00011111111 11111111111111 122222222222111 33345667777777777777777666645542
Q ss_pred C--c-----HHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccc
Q psy4866 364 R--R-----VLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKA 436 (537)
Q Consensus 364 ~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 436 (537)
+ | .-..+++++.+++++.+.+...... .+...+.++.+....+. ........|+..+.++++.|++.+|
T Consensus 337 ~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~---~~~~~s~~wl~~~~~~~-t~gEl~~sPvgls~~~~laP~~~~g 412 (493)
T PRK15462 337 AGNRTVRIWGKFALGLGLMSAGFCILTLSARWSA---MYGHSSLPLMVLGLAVM-GFAELFIDPVAMSQITRIEIPGVTG 412 (493)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcC---CCCCcCHHHHHHHHHHH-HHHHHHHChHHHHHHHHhChHHHHH
Confidence 2 2 1256777777777776655332211 00112333344444444 4445667899999999999999999
Q ss_pred hhhHHHHHHH-HHHHHHHHHHHHHH
Q psy4866 437 VSCAVINILC-TTLGLISYKLFFLM 460 (537)
Q Consensus 437 ~~~g~~~~~~-~~g~~~~~~~~g~l 460 (537)
..+|+..... .+|..++..+.+..
T Consensus 413 ~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 413 VLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999986533 46655555554443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.5e-20 Score=182.18 Aligned_cols=380 Identities=14% Similarity=0.085 Sum_probs=230.4
Q ss_pred HHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhh-----hhHHHHHHHHHH
Q psy4866 70 TACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIG-----RKWSLLMTGPIT 144 (537)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G-----rr~~l~~~~~l~ 144 (537)
++....+..|+..-....+.|.+.+ ++|+|.++++...+...+...+-.+ +|+++||++ ||+.++++.++.
T Consensus 30 ~~~~~y~~qGl~~l~~~~~~~~l~~---~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~ 105 (468)
T TIGR00788 30 IGLQVLFVKGIAGLMRLPLSPMLTD---DLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLG 105 (468)
T ss_pred HHHHHHHHhhHHHHhhhhhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHH
Confidence 3344456677773334444566666 7999999999999999999999776 999999998 788888887776
Q ss_pred H-HHHHHHHHHhhHHHH-HHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHh---HHHHHHHHHHHHHHhhh----
Q psy4866 145 T-ASWIIAMYSRSVLGL-YVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLF---QISCHLGILYTYVLGSE---- 215 (537)
Q Consensus 145 ~-~~~~~~~~~~~~~~l-~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~---~~~~~~G~~i~~~l~~~---- 215 (537)
. +.....+..++.... .+..++.+++.+...++..++..|..+ +++....+.. .....+|.++++.+++.
T Consensus 106 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~ 184 (468)
T TIGR00788 106 SAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK 184 (468)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 443334444554444 448999999999999999999999998 5554433333 22233666666666554
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhc
Q psy4866 216 LSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMG 295 (537)
Q Consensus 216 ~~wr~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (537)
++||..|++.+.+.++..+..++++|++.....+.+ ++.. .. .........+ ...+.....+..++
T Consensus 185 ~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~-~~~~--------~~--~~~~~~~~~~---~~~~~~~~l~~~l~ 250 (468)
T TIGR00788 185 TLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIG-TYLE--------MN--MALLTLGVLA---NVKVQILGLRGAIQ 250 (468)
T ss_pred cCcchHHHHHHHHHHHHHHHHHhccccccccccccc-ccch--------hh--hhhhhhhHHH---HHHHHHHHHHHHHh
Confidence 589999999988887776666777876310000000 0000 00 0000000000 00000112223343
Q ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHH
Q psy4866 296 RSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETF-LPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAG 374 (537)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 374 (537)
++..+..+...++.+.........+..+.+ ...|.+ ...+....+.+++.+++..+.+++.+|++.|+.+.++.++
T Consensus 251 ~~~i~~~l~fifl~~~~~~~~~~~~f~~~~---~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l 327 (468)
T TIGR00788 251 LLEIAKPLIFIFLSYANLPGASGSVFCATT---QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLL 327 (468)
T ss_pred cHHHHHHHHHHHHHHhhcCCCCceeEEEEc---ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 333333222222211111110000000111 223444 2455666777899999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHH
Q psy4866 375 CSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISY 454 (537)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 454 (537)
.+++.+.......... .... ....+.......+...+.+..+.+. ..++.+..|++.+|+..++.+.+.++|..+++
T Consensus 328 ~~~~~~~~~~l~~~~~-~~~g-i~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~ 404 (468)
T TIGR00788 328 YTLSSLFDLILVKRWN-LAFG-ISDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSG 404 (468)
T ss_pred HHHHHhCceeeeeccc-cccC-CCCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHH
Confidence 7776644321110000 0000 0112334444555666666666665 48999999999999999999999999999999
Q ss_pred HHHHHHHHhhc-----cchhhhHhh
Q psy4866 455 KLFFLMDKHIG-----MYSNFLFGG 474 (537)
Q Consensus 455 ~~~g~l~~~~g-----~~~~~~~~~ 474 (537)
.+.+.+.+..| +...+....
T Consensus 405 ~~gg~l~~~~g~~~~~~~~~~~~i~ 429 (468)
T TIGR00788 405 FLGVLLMETIGITCDNSNNLWLLIL 429 (468)
T ss_pred HHHHHHHHHcCCCcccccchHHHHH
Confidence 99999999888 555444433
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=177.80 Aligned_cols=365 Identities=16% Similarity=0.125 Sum_probs=222.0
Q ss_pred hhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHH--HHHHHHHHHH-HHH-
Q psy4866 79 GMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTG--PITTASWIIA-MYS- 154 (537)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~--~l~~~~~~~~-~~~- 154 (537)
-+..+...|..+...++ +.|+|.+++|.+.++..+...+.+++.|.++||+|.||-++..+ ++...+.... .+.
T Consensus 20 Ff~~gi~~pF~~iWL~~--~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~p 97 (412)
T PF01306_consen 20 FFIWGIFLPFFPIWLTQ--VAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGP 97 (412)
T ss_dssp HHHHHHHHHHHHHHHHH--HH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHcc--ccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666777666651 47999999999999999999999999999999999655444332 2222222222 222
Q ss_pred ---hhHH-HHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh---hHHHHHHHHHH
Q psy4866 155 ---RSVL-GLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL---SYMNYLTYSLI 227 (537)
Q Consensus 155 ---~~~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~---~wr~~~~~~~~ 227 (537)
.|++ ..+++-+..|++.....++.-+++.++. ++.+.=.|-.-+..++|.+++..+++.+ +-+..||+...
T Consensus 98 ll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~ 175 (412)
T PF01306_consen 98 LLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASA 175 (412)
T ss_dssp HHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHH
Confidence 2332 2333444455555555566666665554 2234444555556666666666666552 55677887776
Q ss_pred HHHHHHHHhhcc-cCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccc---hHHhhccchHHHHH
Q psy4866 228 IPIIFTVTFMFM-PESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTN---FREFMGRSNMKAFV 303 (537)
Q Consensus 228 ~~~~~~~~~~~~-~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 303 (537)
.+++..++.++. |+.++. ....+ ....++++.+ ..+++|.+..|.+.
T Consensus 176 ~~~il~lll~~~~~~~~~~----------------~~~~~-------------~~~~~~~~~~~~~~~~l~k~~~fw~~~ 226 (412)
T PF01306_consen 176 AAIILLLLLLLLKPDVPPQ----------------AEVAD-------------ALGAKKDKVSLKDVLSLFKMRNFWFFV 226 (412)
T ss_dssp HHHHHHHHHHSS---SSSS----------------S-SST-------------TSSS------HHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCchh----------------hhhhc-------------ccccCCCCCcHHHHHHHhcchhHHHHH
Confidence 666555444433 333210 00000 0000111222 33455555544433
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-----ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHH
Q psy4866 304 FMAFLAVFRAFTGVQSIIAYANTIFASSETFL-----PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLF 378 (537)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 378 (537)
+....... .+..+....+.|+.....+. .-++...+..+..++...+..++.+|+|.|+.++++..++.+-
T Consensus 227 l~v~g~~~----~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iR 302 (412)
T PF01306_consen 227 LFVIGVAA----IYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIR 302 (412)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHH
Confidence 32222222 24444444455555432221 1225556667778888899999999999999999999998888
Q ss_pred HHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHH-HHHHHHHHHHHHHHH
Q psy4866 379 SFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVI-NILCTTLGLISYKLF 457 (537)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~ 457 (537)
....++. ++.+...+.-.+-+.-+.....+. .-|+.+.+|++..++...+. +...++|.++.+.+.
T Consensus 303 i~~~~~~------------~~~~~i~~~klLH~~e~~l~lva~-fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~ 369 (412)
T PF01306_consen 303 IIGSGFA------------TNPWVISLIKLLHALEFPLLLVAA-FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLA 369 (412)
T ss_dssp HHHHHT--------------SHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHhhh------------cchHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 7777663 355566666666677666655554 48999999999988988885 677899999999999
Q ss_pred HHHHHhhccchhhhHhhHHHHHHHHHHHhhccCCCC
Q psy4866 458 FLMDKHIGMYSNFLFGGVSSLVCTVYLYYFLLETKG 493 (537)
Q Consensus 458 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (537)
|.+.|+.|++.++++++.+.+...++..+.+++.++
T Consensus 370 G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 370 GYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 999999999989999998888888887777655443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.5e-19 Score=174.47 Aligned_cols=331 Identities=14% Similarity=0.182 Sum_probs=233.9
Q ss_pred hHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhh----hhhhh-HHHHHHHHHHHHHHHHHHHH-h------
Q psy4866 88 VLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVN----RIGRK-WSLLMTGPITTASWIIAMYS-R------ 155 (537)
Q Consensus 88 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~d----r~Grr-~~l~~~~~l~~~~~~~~~~~-~------ 155 (537)
..+.+.+ .+|+++..+|.+..+..+-.++..|+.|.++| |+||| +.++++.++.+++.+++... +
T Consensus 24 ~~~f~~~---~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~ 100 (428)
T PF13347_consen 24 LLYFYTD---VLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFT 100 (428)
T ss_pred HHHHHHH---HcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhh
Confidence 3455666 78999999999999999999999999999999 89965 55667888888887777665 4
Q ss_pred -hHHHHHHHHHHHHhHhhhhhhhhhhhhhccCC-CcccchhhhHhHHHHHHHHHHHHHHhhh----h-------hHHHHH
Q psy4866 156 -SVLGLYVMRTLQGFSMAAIYVISPMYLGEISE-TSIRGTIGTLFQISCHLGILYTYVLGSE----L-------SYMNYL 222 (537)
Q Consensus 156 -~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~-------~wr~~~ 222 (537)
....+.+.-++..++.........++..|..+ +++|.+..+.-..+..+|.++...+... + +|++..
T Consensus 101 ~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~ 180 (428)
T PF13347_consen 101 AKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMA 180 (428)
T ss_pred hHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHH
Confidence 23445777777899999999999999999997 4689999999888888888654443322 1 588888
Q ss_pred HHHHHHHHHHHHH-hhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHH
Q psy4866 223 TYSLIIPIIFTVT-FMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKA 301 (537)
Q Consensus 223 ~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (537)
++.+++.++..+. .+..+|.++ +.+++.++.+-+..++.+++++.+..
T Consensus 181 ~v~~iv~~v~~~i~~~~~ke~~~-------------------------------~~~~~~~~~~~~~~~~~~~~nr~~~~ 229 (428)
T PF13347_consen 181 LVLAIVGLVFFLITFFFVKERSV-------------------------------EVTEQEKKISLRDSLRSLFRNRPFRI 229 (428)
T ss_pred HHHHHHHHHHhhhhhheeeeccc-------------------------------cccccccccccccchhhhcccchHHH
Confidence 8888887765544 445665210 00001111112455666776665555
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCCCChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHH
Q psy4866 302 FVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSF 380 (537)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 380 (537)
.+....+..+.... ...+.+.+.+.. +..........+..+..+++.++.++++||+|+|+.+..+.++.+++.+
T Consensus 230 l~~~~~~~~~~~~~----~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~ 305 (428)
T PF13347_consen 230 LLLAFFLQWLAFAL----MNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFL 305 (428)
T ss_pred HHHHHHHHHhhhhh----hhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHH
Confidence 55544444443332 233333333332 2222334556677888899999999999999999999999999888887
Q ss_pred HHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCC-------ccccchhhHHHHHHHHHHHHHH
Q psy4866 381 IAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFS-------SNMKAVSCAVINILCTTLGLIS 453 (537)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~ 453 (537)
.+.+.. ..+.+..++...+.+.+.+... ...+++.+|+.+ ++..|...|+.++...++..++
T Consensus 306 ~~~~~~----------~~~~~~~~i~~~l~gi~~~~~~-~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la 374 (428)
T PF13347_consen 306 LLFFLG----------PGSPWLVLILFILAGIGYGAFF-VIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLA 374 (428)
T ss_pred HHHHHH----------hhhHHHHHHHHHHhHhhhcccc-cccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHH
Confidence 776642 1245556666666666665544 566788898876 3446889999999999999999
Q ss_pred HHHHHHHHHhhccc
Q psy4866 454 YKLFFLMDKHIGMY 467 (537)
Q Consensus 454 ~~~~g~l~~~~g~~ 467 (537)
+.+.+.+.+..|+.
T Consensus 375 ~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 375 GAIVGLLLALVGYD 388 (428)
T ss_pred HHHHHHHHHHhCcC
Confidence 99999998877754
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-18 Score=171.06 Aligned_cols=322 Identities=12% Similarity=0.059 Sum_probs=199.0
Q ss_pred CCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhh----hhh-hHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHH
Q psy4866 98 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR----IGR-KWSLLMTGPITTASWIIAMYSRS------VLGLYVMRTL 166 (537)
Q Consensus 98 ~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr----~Gr-r~~l~~~~~l~~~~~~~~~~~~~------~~~l~~~r~l 166 (537)
..|++...+|.+..+.-+--++..|+.|.++|| +|| |+.++++.+..+++.+++-..++ +..+++.-++
T Consensus 39 ~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~ 118 (460)
T PRK11462 39 IFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTL 118 (460)
T ss_pred hhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 789999999999999999999999999999996 786 46666787888877766654442 3456667777
Q ss_pred HHhHhhhhhhhhhhhhhccCC-CcccchhhhHhHHHHHHHHHHHHHHhhh-----------hhHHHHHHHHHHHHHHHHH
Q psy4866 167 QGFSMAAIYVISPMYLGEISE-TSIRGTIGTLFQISCHLGILYTYVLGSE-----------LSYMNYLTYSLIIPIIFTV 234 (537)
Q Consensus 167 ~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~l~~~-----------~~wr~~~~~~~~~~~~~~~ 234 (537)
..++.........++..|..+ +++|++..++...+..+|..+++.+... .+|+....+.+++.++..+
T Consensus 119 ~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~ 198 (460)
T PRK11462 119 LTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLA 198 (460)
T ss_pred HHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 788888888889999999986 6889999999998888887776555321 2467666666666555443
Q ss_pred Hh-hcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHHHHHHHH
Q psy4866 235 TF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRA 313 (537)
Q Consensus 235 ~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (537)
.. ...+|.++- + .++.+.+..++..++++.++.......+.....
T Consensus 199 i~~~~~kE~~~~--------------------~--------------~~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~ 244 (460)
T PRK11462 199 FCFFTTKERVEA--------------------P--------------PTTTSMREDLRDIWQNDQWRIVGLLTIFNILAV 244 (460)
T ss_pred HHHhcceeccCC--------------------C--------------ccCCCHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 33 334443200 0 000001223344555444443333333332222
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccc
Q psy4866 314 FTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQ 393 (537)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (537)
.. ......|...+.- +.............+..+++.++++++.||+++|+....+..+..+..+++.+..
T Consensus 245 ~~-~~~~~~y~~~y~~--g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~------- 314 (460)
T PRK11462 245 CV-RGGAMMYYVTWIL--GTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVP------- 314 (460)
T ss_pred HH-HHhHhhhhhhhhc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 22 2222233333321 1111122445566788888999999999999999887655544433333322210
Q ss_pred cCCcccchhhHHHHHHHHHHHhhccccchhhhccccCC-------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy4866 394 YEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFS-------SNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGM 466 (537)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 466 (537)
....+...+..++.+.+.+ ...++.+++..|..+ .+..|...+.......+|.++++.+.|.+.+..|+
T Consensus 315 ---~~~~~~~~~~~~l~g~~~~-~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 315 ---MQASITMFVFIFVIGVLHQ-LVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred ---hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1112222333333444332 234445567776654 33335556777789999999999999999887776
Q ss_pred c
Q psy4866 467 Y 467 (537)
Q Consensus 467 ~ 467 (537)
.
T Consensus 391 ~ 391 (460)
T PRK11462 391 D 391 (460)
T ss_pred C
Confidence 3
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-18 Score=171.90 Aligned_cols=325 Identities=9% Similarity=0.069 Sum_probs=194.3
Q ss_pred HhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhh----hhhH-HHHHHHHHHHHHHHHHHHHh-------hH
Q psy4866 90 EELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI----GRKW-SLLMTGPITTASWIIAMYSR-------SV 157 (537)
Q Consensus 90 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~----Grr~-~l~~~~~l~~~~~~~~~~~~-------~~ 157 (537)
+.+.+ .+|++..++|.+.+...+..++..++.|+++||. |||| .++++.+...+..++....+ ..
T Consensus 33 ~y~~~---~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (448)
T PRK09848 33 SYYTD---VAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKV 109 (448)
T ss_pred HHHHH---HcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHH
Confidence 45555 7899999999999999999999999999999996 7666 44566555554444432111 22
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhhhccCCC-cccchhhhHhHHH-----HHHHHHHHHHHhhhh------hHHHHHHHH
Q psy4866 158 LGLYVMRTLQGFSMAAIYVISPMYLGEISET-SIRGTIGTLFQIS-----CHLGILYTYVLGSEL------SYMNYLTYS 225 (537)
Q Consensus 158 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~-----~~~G~~i~~~l~~~~------~wr~~~~~~ 225 (537)
..+++.-++.+++.+...+...++..+...+ ++|.+..++-..+ ..+|..++|.++... +|.....+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~ 189 (448)
T PRK09848 110 VYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVL 189 (448)
T ss_pred HHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence 3345556778888888888788887777654 6688876665443 334555566655432 121111222
Q ss_pred HHHHHHHH-HHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHH
Q psy4866 226 LIIPIIFT-VTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVF 304 (537)
Q Consensus 226 ~~~~~~~~-~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (537)
++++++.. +.....||++. .+ .++...+..++.+++++......+
T Consensus 190 ~v~~~~~~~~~~~~~~e~~~-------------------~~---------------~~~~~~~~~~~~l~~n~~f~~~~~ 235 (448)
T PRK09848 190 AIAGMVLYFICFKSTRENVV-------------------RI---------------VAQPSLKISLQTLKRNRPLFMLCI 235 (448)
T ss_pred HHHHHHHHHHHHcCcEeccC-------------------CC---------------ccCCCHHHHHHHHhCCchHHHHHH
Confidence 22332222 22233455420 00 000001223455666555443333
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhc-CCCCChh-HHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHH
Q psy4866 305 MAFLAVFRAFTGVQSIIAYANTIFASS-ETFLPSD-YISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIA 382 (537)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 382 (537)
..++... +......+.+.+++.. +.+.... .......++.+++.++.+++.||+++|+.+..+.++..++.+.+
T Consensus 236 ~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~ 311 (448)
T PRK09848 236 GALCVLI----STFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLF 311 (448)
T ss_pred HHHHHHH----HHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 3333322 2333344455555443 2211111 22222345677888999999999999999999888777776655
Q ss_pred HHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCcc-------ccchhhHHHHHHHHHHHHHHHH
Q psy4866 383 GLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSN-------MKAVSCAVINILCTTLGLISYK 455 (537)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~g~~~~~~~~g~~~~~~ 455 (537)
.+. . ..+.+...+...+.+.+.+... +...++..|..|.+ .+|...|+.+....+|.++++.
T Consensus 312 ~~~---~-------~~~~~~~~~~~~l~g~G~~~~~-~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~ 380 (448)
T PRK09848 312 FWV---S-------VWSLPVALVALAIASIGQGVTM-TVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGS 380 (448)
T ss_pred HHc---C-------chhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHH
Confidence 431 0 1123333344445555554443 44557777776543 4589999999999999999999
Q ss_pred HHHHHHHhhcc
Q psy4866 456 LFFLMDKHIGM 466 (537)
Q Consensus 456 ~~g~l~~~~g~ 466 (537)
+.+.+.+..|+
T Consensus 381 i~g~~l~~~G~ 391 (448)
T PRK09848 381 IPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHcCC
Confidence 99999887776
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.5e-17 Score=160.45 Aligned_cols=352 Identities=16% Similarity=0.168 Sum_probs=229.7
Q ss_pred hhhHHHHHHHHHHhhhhhhhHHhhhhhhhhH-HHHHHHHHHHHHHHHHHHH-h-hHHHHHHHHHHHHhHhhhhhhhhhhh
Q psy4866 105 EGSWVVAIIEIGNYLSPIPAGMLVNRIGRKW-SLLMTGPITTASWIIAMYS-R-SVLGLYVMRTLQGFSMAAIYVISPMY 181 (537)
Q Consensus 105 ~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~-~l~~~~~l~~~~~~~~~~~-~-~~~~l~~~r~l~G~~~~~~~~~~~~~ 181 (537)
..++..++..+-.++..++.|.++|+-|+|| .+.+..++..+.+.+..+. + +++...+.-++.-++.+...+...++
T Consensus 71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~ 150 (477)
T PF11700_consen 71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY 150 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999999999999655 4555566666677776664 2 45555566666677888888999999
Q ss_pred hhccCCCccc--------------------------chhhhHhHHHHHHHHHHHHHHhhhh------------hHHHHHH
Q psy4866 182 LGEISETSIR--------------------------GTIGTLFQISCHLGILYTYVLGSEL------------SYMNYLT 223 (537)
Q Consensus 182 i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~i~~~l~~~~------------~wr~~~~ 223 (537)
+.|..+++++ ++..+.-.....+|.++.-++.-.+ +-|..+.
T Consensus 151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~ 230 (477)
T PF11700_consen 151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL 230 (477)
T ss_pred hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence 9999998888 8988888777788887765554331 2477777
Q ss_pred HHHHHHHH-HHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHH
Q psy4866 224 YSLIIPII-FTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAF 302 (537)
Q Consensus 224 ~~~~~~~~-~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (537)
+.++.-++ .+...+++||.|+. +..+ ...........+. ...++++.+ .+-
T Consensus 231 ~~a~ww~vfsiP~~~~~~~~~~~---~~~~------------~~~~~~~~g~~~l---------~~t~k~~~~----~~~ 282 (477)
T PF11700_consen 231 IVALWWLVFSIPLFLWLPDRPGP---RPLP------------SGSSYLRFGFKRL---------WRTFKEIRK----LRQ 282 (477)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCC---CCCC------------cchhHHHHHHHHH---------HHHHHHHHh----ChH
Confidence 77777555 44556677877621 0000 0000000000000 112222222 222
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH-hcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCc--HHHHHhhHHHHHH
Q psy4866 303 VFMAFLAVFRAFTGVQSIIAYANTIFA-SSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRR--VLFLVSSAGCSLF 378 (537)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~~ 378 (537)
+..+.+..+...-+...+......|.. ..+++. +.....++..+.+++|.++.+++.||+|.| +.+....++..+.
T Consensus 283 ~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i 362 (477)
T PF11700_consen 283 LFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIII 362 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 333444444444556667777676666 446553 233566678899999999999999999999 7766665555332
Q ss_pred HHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHH
Q psy4866 379 SFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFF 458 (537)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g 458 (537)
.+.-.+.. ... .. ...+.+...+...+.+.+.+. ..+..-++.+|+.|+++.+..+|++...+...+++||.++|
T Consensus 363 ~~~g~~G~-~~~--~~-g~~~~~~f~~~a~~~G~~~G~-~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g 437 (477)
T PF11700_consen 363 PLYGLFGF-WPS--FF-GLKSPWEFWVLAVLIGLFMGG-IQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFG 437 (477)
T ss_pred HHHHHHHh-hhc--cc-CcccHHHHHHHHHHHHHHhhh-HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221100 000 00 012344455555555555543 45667799999999999999999999999999999999999
Q ss_pred HHHHhhc-cchhhhHhhHHHHHHHHHHHhhccC
Q psy4866 459 LMDKHIG-MYSNFLFGGVSSLVCTVYLYYFLLE 490 (537)
Q Consensus 459 ~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (537)
.+.+..| .+..+....++.+++.++. ...+.
T Consensus 438 ~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~ 469 (477)
T PF11700_consen 438 LITDATGSQRYGFLFLLVLFLIGLILL-FFVDV 469 (477)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHHH-hhccc
Confidence 9999987 5677777777777776665 44433
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-17 Score=159.89 Aligned_cols=338 Identities=13% Similarity=0.077 Sum_probs=228.6
Q ss_pred hccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhh----hhh-hHHHHHHHHHHHHHHHHHHHHhh
Q psy4866 82 FAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR----IGR-KWSLLMTGPITTASWIIAMYSRS 156 (537)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr----~Gr-r~~l~~~~~l~~~~~~~~~~~~~ 156 (537)
.......+..+-.+ .+|++...+|.+..+.-+--++..|+.|.++|| +|| |+.++.+.+.+++.+.++-.+++
T Consensus 28 ~~~~~~yLl~fYTd--v~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~ 105 (467)
T COG2211 28 FGIVVLYLLFFYTD--VFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPD 105 (467)
T ss_pred HHHHHHHHHHHHhc--ccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCC
Confidence 33333334344332 789999999999999999999999999999996 785 67788888999998888877773
Q ss_pred ------HHHHHHHHHHHHhHhhhhhhhhhhhhhccCC-CcccchhhhHhHHHHHHHHHHHHHHhhh-----------hhH
Q psy4866 157 ------VLGLYVMRTLQGFSMAAIYVISPMYLGEISE-TSIRGTIGTLFQISCHLGILYTYVLGSE-----------LSY 218 (537)
Q Consensus 157 ------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~l~~~-----------~~w 218 (537)
....++.-++.+++.........++..|+.+ ++||.+..++-+.+..+|.++...+... .+|
T Consensus 106 ~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~ 185 (467)
T COG2211 106 FSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGY 185 (467)
T ss_pred cccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhH
Confidence 4556778899999999999999999999984 5789999999999999997665444321 368
Q ss_pred HHHHHHHHHHHHHHHHHhh-cccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhh--hhcccccchHHhhc
Q psy4866 219 MNYLTYSLIIPIIFTVTFM-FMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNT--SKNVERTNFREFMG 295 (537)
Q Consensus 219 r~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 295 (537)
+..-++.++++++..+..+ -.+|.+. +. ++.+ .+.+.+..+..+++
T Consensus 186 ~~~~~~~~vi~~i~~l~~~~~v~ER~~-------------------~~------------~~~~~~~~~~~~~~~~~~~~ 234 (467)
T COG2211 186 QGTALVLGVIGVILLLFCFFNVKERVV-------------------ET------------QPTKTGVKLKLKDSFLLIFK 234 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccC-------------------cc------------ccCcccccccHHHHHHHHHc
Confidence 8777777777766554443 3555431 00 0000 00000222334555
Q ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhH
Q psy4866 296 RSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSA 373 (537)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 373 (537)
++.+....+...+.. .+.+.......+|.+.. +..+ .+.........+.+++.++..++.+|+|+|+++..+.+
T Consensus 235 Nrp~~~~l~~~l~~~----~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~ 310 (467)
T COG2211 235 NRPLLLLLLMNLLLF----IAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLL 310 (467)
T ss_pred cchHHHHHHHHHHHH----HHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHH
Confidence 544433333222222 22333333333333322 2211 22344555566667778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCC-------ccccchhhHHHHHHH
Q psy4866 374 GCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFS-------SNMKAVSCAVINILC 446 (537)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~ 446 (537)
+..++.+++.+.. ..+.+..++..++.+.+.+. ..++.+++++|... .+..|...|...++.
T Consensus 311 ~~~i~~~~~~f~~----------~~~~~l~~~~~~i~~~g~~~-~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~ 379 (467)
T COG2211 311 LLAVGYLLLYFTP----------AGSVVLIVVALIIAGVGTGI-ANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFR 379 (467)
T ss_pred HHHHHHHHHHhhc----------CcchHHHHHHHHHHHHHhhc-cccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHH
Confidence 8888888777642 12333444444555555544 55788899988853 445688899999999
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q psy4866 447 TTLGLISYKLFFLMDKHIGMY 467 (537)
Q Consensus 447 ~~g~~~~~~~~g~l~~~~g~~ 467 (537)
-+|.+++..+.|++.+..|+.
T Consensus 380 K~g~ala~~~~g~~L~~~Gyv 400 (467)
T COG2211 380 KLGLALAGFIPGWILGAIGYV 400 (467)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999987753
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-17 Score=153.96 Aligned_cols=269 Identities=13% Similarity=0.105 Sum_probs=184.1
Q ss_pred HHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----------------
Q psy4866 152 MYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE---------------- 215 (537)
Q Consensus 152 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~---------------- 215 (537)
+...+|+.++++-|+.|.|.+...+..+.++++..+++++.+.+++.+...++|.+++|.++..
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 3567899999999999999999999999999999999999999999999999999999999863
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHhhc--ccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccc
Q psy4866 216 ----LSYMNYLTYSLIIPIIFTVTFMF--MPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTN 289 (537)
Q Consensus 216 ----~~wr~~~~~~~~~~~~~~~~~~~--~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (537)
..|+++|++.+.+.++..+.+.+ +||... + + + + +...++ ...
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~--------------~--~--~------~~~~~~--~~~ 132 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------A--------------D--V--A------RVSSGD--TTQ 132 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------c--------------c--c--c------cccccc--ccc
Confidence 25889998666665444444333 354310 0 0 0 0 000000 001
Q ss_pred hHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc---CCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCc
Q psy4866 290 FREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS---ETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRR 365 (537)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~ 365 (537)
.++.++++. .+...+..++.......+..|.+.|+.+. +.+. ........+..+.++|+++++++.||+++|
T Consensus 133 ~~~~~~~~~----~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~ 208 (310)
T TIGR01272 133 KTSAFQFTH----LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQG 208 (310)
T ss_pred hhhHHhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 112222222 33334444444445667788888888653 4432 345677788899999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHH
Q psy4866 366 VLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINIL 445 (537)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 445 (537)
+.+..+..+..++.+++... +.........+++.+.+..+ |...+...+..|++ .+++.++. ..
T Consensus 209 ~~l~~~~~l~~~~~~l~~~~-------------~~~~~~~~~~l~g~~~s~i~-P~~~s~a~~~~~~~-~~~asai~-~~ 272 (310)
T TIGR01272 209 RYLAFNAFLAVLLSIGAALT-------------HGYVAMWFVLALGLFNSIMF-PTIFSLALNALGRH-TSQGSGIL-CL 272 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhh-hhhhHHHH-HH
Confidence 98887776666655433321 12223334445666655544 55557777777764 56777775 56
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhhH
Q psy4866 446 CTTLGLISYKLFFLMDKHIGMYSNFLF 472 (537)
Q Consensus 446 ~~~g~~~~~~~~g~l~~~~g~~~~~~~ 472 (537)
+.+|+++.|.+.|.+.|..|.+.++++
T Consensus 273 ~~~Gg~i~P~l~G~lad~~g~~~a~~v 299 (310)
T TIGR01272 273 AIVGGAIVPLLQGSLADCLGIQLAFAL 299 (310)
T ss_pred HHhcchHHHHHHHHHHHhccchHHHHH
Confidence 789999999999999999898777653
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-15 Score=140.24 Aligned_cols=345 Identities=13% Similarity=0.086 Sum_probs=226.4
Q ss_pred CChhhHHHHHHHHHHhhhhhhhHHhhhhhhh-hHHHHHHHHHHHHHHHHHHHHhh--H-HHHHHHHHHHHhHhhhhhhhh
Q psy4866 103 PNEGSWVVAIIEIGNYLSPIPAGMLVNRIGR-KWSLLMTGPITTASWIIAMYSRS--V-LGLYVMRTLQGFSMAAIYVIS 178 (537)
Q Consensus 103 ~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Gr-r~~l~~~~~l~~~~~~~~~~~~~--~-~~l~~~r~l~G~~~~~~~~~~ 178 (537)
.+..+...++..+-.++..++.|.++|+.|+ |+.+-....+..++..+..++++ + +..++.-.+..++.....+..
T Consensus 57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy 136 (438)
T COG2270 57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY 136 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence 3456888899999999999999999999995 55555666666677777777665 4 445566788889999999999
Q ss_pred hhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----------------------hhHHHHHHHHHHHHHHHH-HH
Q psy4866 179 PMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----------------------LSYMNYLTYSLIIPIIFT-VT 235 (537)
Q Consensus 179 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----------------------~~wr~~~~~~~~~~~~~~-~~ 235 (537)
.+++.+..++++-++..++-.....+|..+.-++... ..-|..+.+.++..++.. ..
T Consensus 137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm 216 (438)
T COG2270 137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM 216 (438)
T ss_pred hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence 9999999999888888777655555665554333211 135777777777665544 44
Q ss_pred hhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHHHHHHHHhh
Q psy4866 236 FMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFT 315 (537)
Q Consensus 236 ~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (537)
++.+++.++- .............+. +.+++++.+++... .+.+..+...-
T Consensus 217 ~~~v~~~~~~-----------------~~~~~~~l~~g~k~L---------~~t~k~i~~~~~i~----~FLiA~~~~~D 266 (438)
T COG2270 217 ILNVHDAEKI-----------------SSPPPTALRNGFKEL---------KSTFKEIRGRKNLV----LFLIARFFYID 266 (438)
T ss_pred Hhcccccccc-----------------cccchHHHHHHHHHH---------HHHHHHHhcccchH----HHHHHHHHHHh
Confidence 4555554310 000000011111111 33444444433322 23333333334
Q ss_pred hHHHHHHHHHHHHH-hcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccc
Q psy4866 316 GVQSIIAYANTIFA-SSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQ 393 (537)
Q Consensus 316 ~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (537)
+.+.+..+...+-. ..+.+. +-........+.+++|+++.|++.||+|.|+++..+.++..+..+...+.
T Consensus 267 Gv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~-------- 338 (438)
T COG2270 267 GVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL-------- 338 (438)
T ss_pred hHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc--------
Confidence 56666666666665 456553 23356667789999999999999999999999988888777766655442
Q ss_pred cCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hhhhH
Q psy4866 394 YEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMY-SNFLF 472 (537)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~-~~~~~ 472 (537)
.......+...+++.+.+. ..+..-++..+.+|+++.++.+|+++..+...++.+|.+.+.+.+.+|.. ..+..
T Consensus 339 ----~~~~~f~i~gll~g~s~G~-~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~ 413 (438)
T COG2270 339 ----EGELDFWILGLLVGTSLGG-AQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLS 413 (438)
T ss_pred ----cccHHHHHHHHHHHHhcch-HHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHH
Confidence 2233334444445555443 44556789999999999999999999999999999999999999887754 33444
Q ss_pred hhHHHHHHHHHHHhhccCC
Q psy4866 473 GGVSSLVCTVYLYYFLLET 491 (537)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~ 491 (537)
..++..++.++. ...|..
T Consensus 414 i~vll~iGl~~L-~~v~~~ 431 (438)
T COG2270 414 IIVLLLIGLLLL-LRVKVP 431 (438)
T ss_pred HHHHHHhhHhhE-EeecCC
Confidence 444444444433 344433
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=6e-17 Score=155.00 Aligned_cols=386 Identities=15% Similarity=0.126 Sum_probs=223.6
Q ss_pred HHHHhhhhhhhhhccchhhHHhhhc-CCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhh-hHHHHHHHHHHHHH
Q psy4866 70 TACIAAFTTGMSFAWSAPVLEELLS-KESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGR-KWSLLMTGPITTAS 147 (537)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Gr-r~~l~~~~~l~~~~ 147 (537)
+..+..|+.+...+.+.+..-.+.+ . |.+.+.+..|++.++..+|.++++++.|++..|.|. |+.++.|.++.++|
T Consensus 38 l~~~~sfl~~v~~sI~~~s~wpYl~~l--D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g 115 (488)
T KOG2325|consen 38 LALLNSFLVAVQFSIYLTSMWPYLQKL--DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIG 115 (488)
T ss_pred HHHHHHHHHhhhheEEEeecchhhhhc--CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHH
Confidence 3444566677777777666544444 2 477888889999999999999999999999999996 88899999999999
Q ss_pred HHHH-HHH---h-hHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh------
Q psy4866 148 WIIA-MYS---R-SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL------ 216 (537)
Q Consensus 148 ~~~~-~~~---~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~------ 216 (537)
+++. ++. + ..+.++++|++.|+|.|.. ...-+|+++....++|.++++....+..+|.++||.++..+
T Consensus 116 ~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~ 194 (488)
T KOG2325|consen 116 NLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEK 194 (488)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCC
Confidence 9988 332 2 5788999999999997655 67889999988888999999999998899999998887553
Q ss_pred h-----------HHHHHHHHHHHHHHHH-HHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhc
Q psy4866 217 S-----------YMNYLTYSLIIPIIFT-VTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKN 284 (537)
Q Consensus 217 ~-----------wr~~~~~~~~~~~~~~-~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (537)
| +..+-|+.+++.++.+ ++.+++.|.++- .++++.+.+ ++.+.+.
T Consensus 195 G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~-------------------~~~~~~~~~-~~~~~~~--- 251 (488)
T KOG2325|consen 195 GFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRG-------------------IIDKKKRSV-EEEKSDI--- 251 (488)
T ss_pred ceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccC-------------------ccccccccc-hhhccch---
Confidence 1 2346677777776644 444556666421 000000000 0000000
Q ss_pred ccccchHHhhc-cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-Chh-HHHHHHHHHHHHHh---hhHhhh
Q psy4866 285 VERTNFREFMG-RSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSD-YISILFAIILLVSI---FPSTYY 358 (537)
Q Consensus 285 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~---~~~g~l 358 (537)
.+.-. +..+...+.+....+...+.....-..+.+......+... .+. +......+.+++.. +...+.
T Consensus 252 ------~~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~ 325 (488)
T KOG2325|consen 252 ------EKVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFT 325 (488)
T ss_pred ------hhhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 00001 1222222333333333222222222223333333444432 222 22223333333322 222222
Q ss_pred h-cccCCcHHHHHhhHHHHHHHHHHHHHHHhhh-----------ccccC-------CcccchhhHHH--HHHHHHHHhhc
Q psy4866 359 I-DRAGRRVLFLVSSAGCSLFSFIAGLYYYVTI-----------ELQYE-------IPYTSWVPFLS--ISLLGVFFNLG 417 (537)
Q Consensus 359 ~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~-------~~~~~~~~~~~--~~~~~~~~~~~ 417 (537)
. .++.+|+.+..++.+...+..+....+.... +++.+ .+..++..++. .++++.++-..
T Consensus 326 ~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~ 405 (488)
T KOG2325|consen 326 RLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFI 405 (488)
T ss_pred HhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccc
Confidence 2 2334445544443333333322221111110 00000 00001111111 12222222221
Q ss_pred cccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhHHHHHHHHHHHhhc
Q psy4866 418 FGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFL 488 (537)
Q Consensus 418 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 488 (537)
..+ ..+.-+|...+..+++..|+......++..++|.+...+....|.+..+.+.++..++...+...+.
T Consensus 406 ~~~-~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~~ 475 (488)
T KOG2325|consen 406 STA-LDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVFL 475 (488)
T ss_pred cch-HHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 222 3367788888899999999999999999999999999999999999777666665555554443433
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.3e-16 Score=153.59 Aligned_cols=294 Identities=14% Similarity=0.160 Sum_probs=207.2
Q ss_pred HHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHH
Q psy4866 66 FLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITT 145 (537)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~ 145 (537)
..+++.++..+..++..+++...+..+.+ .|+++.++.|++.+.+-++..+...+..+..-|.-|-+.+-+|+++++
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiEr---RF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~ 173 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIER---RFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMG 173 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhh---hcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHH
Confidence 45566777788888888999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh--------------------------------------------------h-HH-HHHHHHHHHHhHhhh
Q psy4866 146 ASWIIAMYSR--------------------------------------------------S-VL-GLYVMRTLQGFSMAA 173 (537)
Q Consensus 146 ~~~~~~~~~~--------------------------------------------------~-~~-~l~~~r~l~G~~~~~ 173 (537)
++++++++-+ + ++ .++++.++.|+|...
T Consensus 174 lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp 253 (735)
T KOG3626|consen 174 LGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP 253 (735)
T ss_pred HHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC
Confidence 9999998730 0 23 566789999999999
Q ss_pred hhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh-----------------------hHHHHHHHHHHHHH
Q psy4866 174 IYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-----------------------SYMNYLTYSLIIPI 230 (537)
Q Consensus 174 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~-----------------------~wr~~~~~~~~~~~ 230 (537)
.++.+.+|+-|...+++-+..+++......+|.++|.+++++. .|+.-|++.+.+.+
T Consensus 254 i~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~ 333 (735)
T KOG3626|consen 254 IFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLL 333 (735)
T ss_pred CccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998763 37778888888888
Q ss_pred HHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhc---cchHHHHHHHHH
Q psy4866 231 IFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMG---RSNMKAFVFMAF 307 (537)
Q Consensus 231 ~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 307 (537)
+..+.++++|.... +..++.++++ ....+..+ . ...........++++.+ +....++.+...
T Consensus 334 ~~a~p~f~fPk~lp---~~~~~~~~~~-~~~~k~~~-~----------~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~ 398 (735)
T KOG3626|consen 334 FSAVPLFFFPKELP---KSQKRKRARD-LHVLKTES-G----------GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVV 398 (735)
T ss_pred HHHHHHHhCcccCc---cccccchhhh-hccccccc-c----------cccCCcchhhhHHHHHHHHHHHhcCchHHHHH
Confidence 87777788775531 1111100000 00000000 0 00000000112222222 222334456666
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhc-CCCC-Chh-HHHHHHHHHHHHHhhhHhhhhcccCC--cHHHHHhhHHHHH
Q psy4866 308 LAVFRAFTGVQSIIAYANTIFASS-ETFL-PSD-YISILFAIILLVSIFPSTYYIDRAGR--RVLFLVSSAGCSL 377 (537)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~ 377 (537)
+........+..+.+|+|.|++.. +.+. .+. +...+..-+..+|.+++|++..|+.- |....+..+...+
T Consensus 399 l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l 473 (735)
T KOG3626|consen 399 LASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVL 473 (735)
T ss_pred HHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHH
Confidence 666666667888999999999875 4331 222 23333444567888899999999854 3444333333333
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.8e-15 Score=141.03 Aligned_cols=384 Identities=14% Similarity=0.059 Sum_probs=231.7
Q ss_pred CCCCCChhhHHHHHHHHHHhhhhhhhHHhhhh-hhhhHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhHhhhhh
Q psy4866 99 IPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR-IGRKWSLLMTGPITTASWIIAMYSR--SVLGLYVMRTLQGFSMAAIY 175 (537)
Q Consensus 99 ~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~ 175 (537)
+|+|+++..-+.++|..-.-+..+++|+++|| +|+|+++.+|.+++++|.++.+.+. +...++++-.+.++|.|..=
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 45999999999999998889999999999999 6999999999999999999999884 78899999999999999999
Q ss_pred hhhhhhhhccCCCcc--cchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhhcccC--------
Q psy4866 176 VISPMYLGEISETSI--RGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFMFMPE-------- 241 (537)
Q Consensus 176 ~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~~~~~~~~~~~~~e-------- 241 (537)
+....++.|.+|+++ |-..++++.++.++|.+++|++.++ .+|...|.+.++-..+.++.++..+.
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~ 215 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGV 215 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCC
Confidence 999999999997643 6778888999999999999888766 48999999888777666555444321
Q ss_pred -ChHHHHHhCCHHHHHHHHHhhcCC------ChhhHHHHHHHH--HHhh-----hhcccccchHHhhccchHHHHHHHHH
Q psy4866 242 -SPYFYAIKNQEGKAIESLKWLRNK------TADQVQSELQII--KQNT-----SKNVERTNFREFMGRSNMKAFVFMAF 307 (537)
Q Consensus 242 -sp~~l~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (537)
.|.-+..+.............-.. +.+......... .... .....+.. .+.-|-....++++...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~er~r~~~~~~Lfl~~~ 294 (498)
T COG3104 216 PDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF-DERRRLLAAIPLFLFAV 294 (498)
T ss_pred CCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-HHHHHHHHHHHHHHHHH
Confidence 111010010000000000000000 000000000000 0000 00000000 00000001111222222
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhc--CCCCChhHHHHHHHHHHHHHhhhHhhhhcccCCc-------HHHHHhhHHHHHH
Q psy4866 308 LAVFRAFTGVQSIIAYANTIFASS--ETFLPSDYISILFAIILLVSIFPSTYYIDRAGRR-------VLFLVSSAGCSLF 378 (537)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~-------~~~~~~~~~~~~~ 378 (537)
+....+-.+...+..|.....+.. |++.+..+..++..+.-++..++..++..|.+++ .-+-++..+++.+
T Consensus 295 iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~ 374 (498)
T COG3104 295 IFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLG 374 (498)
T ss_pred HHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHH
Confidence 222222223344555554444333 2334556677777777777777777776664332 2244566666666
Q ss_pred HHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHH
Q psy4866 379 SFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFF 458 (537)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g 458 (537)
++++........ .+ .+..+...++...++........+|+..+++....|+...+..+++.......+..++..+.+
T Consensus 375 fl~l~~~~~~~~-~~--~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 375 FLILLLAGIWFG-GP--SGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHHHHHhhc-CC--CCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 666555422111 00 122334444455555555567788888899999999998888888888888777777777666
Q ss_pred H------HHHhhccchhhhHhhHHHHHHHHHHHh
Q psy4866 459 L------MDKHIGMYSNFLFGGVSSLVCTVYLYY 486 (537)
Q Consensus 459 ~------l~~~~g~~~~~~~~~~~~~~~~~~~~~ 486 (537)
. ..+.......|..++...++..+....
T Consensus 452 ~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~ 485 (498)
T COG3104 452 LTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLL 485 (498)
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 2 233334445666666666655554433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.8e-16 Score=158.71 Aligned_cols=177 Identities=18% Similarity=0.085 Sum_probs=135.0
Q ss_pred hhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHH-H--HHHhhHHHHHH
Q psy4866 86 APVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWII-A--MYSRSVLGLYV 162 (537)
Q Consensus 86 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~-~--~~~~~~~~l~~ 162 (537)
...+|.+.++ ++|.+..+.++..+...++..++.++.|+++||+|||+++.++.++..++.+. . ..+++...+++
T Consensus 270 ~~~~p~~l~~--~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (490)
T PRK10642 270 LTYMPSYLSH--NLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFA 347 (490)
T ss_pred HHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3455665532 67888888888888899999999999999999999999998887654443332 2 22345777888
Q ss_pred HHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHHHHHHHHhh
Q psy4866 163 MRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-----SYMNYLTYSLIIPIIFTVTFM 237 (537)
Q Consensus 163 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~-----~wr~~~~~~~~~~~~~~~~~~ 237 (537)
+|++.|++.+........++.|.+|++.|+.++++......++..++|.+.+++ +|+.++++..+++++.++..+
T Consensus 348 ~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~ 427 (490)
T PRK10642 348 GLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV 427 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence 999999888777777888889999999999999974333444455666555442 477777777777777666777
Q ss_pred cccCChHHHHHh-----CCHHHHHHHHHhhcC
Q psy4866 238 FMPESPYFYAIK-----NQEGKAIESLKWLRN 264 (537)
Q Consensus 238 ~~~esp~~l~~~-----~~~~~a~~~~~~~~~ 264 (537)
++||+|+|+.++ +|.+||++.++++++
T Consensus 428 ~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 428 TMKETANRPLKGATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred HhccccCCCCCCccccccchhhHHHHhhcccc
Confidence 789999998865 999999999999874
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.4e-18 Score=169.96 Aligned_cols=382 Identities=11% Similarity=0.087 Sum_probs=3.0
Q ss_pred HHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHH
Q psy4866 69 VTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASW 148 (537)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~ 148 (537)
+..++..+...+..++....+..+.+ .|+++.++.|++.+.+-++..+..++..++.+|..|-|.+-+|.+++++|+
T Consensus 6 ~~~~~~~~~q~~~~g~~~~~lttiEr---RF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~ 82 (539)
T PF03137_consen 6 VFLCLLGLFQMMVSGYVNSSLTTIER---RFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGS 82 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHH
Confidence 34455556667788888899999999 999999999999999999999999999999999888899999999999999
Q ss_pred HHHHHHh--------------------------------------------------hHHHHHHHHHHHHhHhhhhhhhh
Q psy4866 149 IIAMYSR--------------------------------------------------SVLGLYVMRTLQGFSMAAIYVIS 178 (537)
Q Consensus 149 ~~~~~~~--------------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~ 178 (537)
+++++-+ -++.++++.++.|+|....++.+
T Consensus 83 ~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG 162 (539)
T PF03137_consen 83 LLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLG 162 (539)
T ss_dssp ---------------------------------------------------------------------SSS--------
T ss_pred HHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccce
Confidence 9987621 13567889999999999999999
Q ss_pred hhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh--------------------------hHHHHHHHHHHHHHHH
Q psy4866 179 PMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL--------------------------SYMNYLTYSLIIPIIF 232 (537)
Q Consensus 179 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~--------------------------~wr~~~~~~~~~~~~~ 232 (537)
.+|+-|.+++++-+.+.|+..+...+|.++|.++++.. .|+.-|++.+.+.++.
T Consensus 163 ~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ 242 (539)
T PF03137_consen 163 ITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLS 242 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998887542 2566666666666665
Q ss_pred HHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhc---cchHHHHHHHHHHH
Q psy4866 233 TVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMG---RSNMKAFVFMAFLA 309 (537)
Q Consensus 233 ~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 309 (537)
.+.++++|+.- ..+.+.++..+. +..+.. +... ++.++..........++++.+ +...++.++...+.
T Consensus 243 aipl~~FPk~l---p~~~~~~~~~~~-~~~~~~---~~~~--~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la 313 (539)
T PF03137_consen 243 AIPLFFFPKKL---PGTSERQEEKES-SERKEE---DSDK--DSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILA 313 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHcCCccC---CCcccccchhhh-hhcchh---hhhh--hcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHH
Confidence 56566666442 111110000000 000000 0000 000000000000112222222 33334445556666
Q ss_pred HHHHhhhHHHHHHHHHHHHHhc-CCC-CChh-HHHHHHHHHHHHHhhhHhhhhcccCC--cHHHHHhhHHHHHHHHHHH-
Q psy4866 310 VFRAFTGVQSIIAYANTIFASS-ETF-LPSD-YISILFAIILLVSIFPSTYYIDRAGR--RVLFLVSSAGCSLFSFIAG- 383 (537)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~~~~~~~- 383 (537)
..........+..|.|.|++.. +.+ ..+. +...+...+.++|.+++|++.+|++- |+.+....+...+..+.+.
T Consensus 314 ~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~ 393 (539)
T PF03137_consen 314 GVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSP 393 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666778899999999875 322 1222 33333444667899999999999853 4444433333333333211
Q ss_pred -HHHHhhh------cccc-------C-------------------------Cc-ccch-hhHHHHHHHHHHHhhccccch
Q psy4866 384 -LYYYVTI------ELQY-------E-------------------------IP-YTSW-VPFLSISLLGVFFNLGFGPLF 422 (537)
Q Consensus 384 -~~~~~~~------~~~~-------~-------------------------~~-~~~~-~~~~~~~~~~~~~~~~~~~~~ 422 (537)
++..-++ ..++ . .. .... ..++..++..+.......|..
T Consensus 394 ~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~ 473 (539)
T PF03137_consen 394 LFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPST 473 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchh
Confidence 1100000 0000 0 00 0111 222222233333334444443
Q ss_pred hhhccccCCccccchhhHHHHHHH-HHHHHHHHHHHHHHHHh
Q psy4866 423 TPLLSEYFSSNMKAVSCAVINILC-TTLGLISYKLFFLMDKH 463 (537)
Q Consensus 423 ~~~~~~~~p~~~~~~~~g~~~~~~-~~g~~~~~~~~g~l~~~ 463 (537)
...-..+|+++|+.+.|+...+. -+|.+-+|.++|.+.|.
T Consensus 474 -~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 474 -LITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp ------------------------------------------
T ss_pred -eeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 56668899999999999988665 55678889999999986
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.6e-13 Score=124.06 Aligned_cols=318 Identities=11% Similarity=0.058 Sum_probs=205.9
Q ss_pred CCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhh-----hhHH-HHHHHHHHHHHHHHHHHH-----h-------hH--
Q psy4866 98 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIG-----RKWS-LLMTGPITTASWIIAMYS-----R-------SV-- 157 (537)
Q Consensus 98 ~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G-----rr~~-l~~~~~l~~~~~~~~~~~-----~-------~~-- 157 (537)
|+++...-.+.+.+...+... ..+.+|+.+|+.+ ||.. +..|.++...+..+..++ . +.
T Consensus 9 EL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~ 87 (403)
T PF03209_consen 9 ELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWL 87 (403)
T ss_pred HhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHH
Confidence 788888888888888876654 6889999999998 7755 445677766666655543 2 11
Q ss_pred H--HHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh-----hHHHH--HHHHHHH
Q psy4866 158 L--GLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-----SYMNY--LTYSLII 228 (537)
Q Consensus 158 ~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~-----~wr~~--~~~~~~~ 228 (537)
+ ...+...+.|+|.+.......+++.|..|+++|+++.++......+|.+++.++.+.+ .-|.. +...+++
T Consensus 88 g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i 167 (403)
T PF03209_consen 88 GLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALI 167 (403)
T ss_pred HHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHH
Confidence 2 3445678899999999999999999999999999999999999999999998887663 12222 2222222
Q ss_pred HHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHHH
Q psy4866 229 PIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFL 308 (537)
Q Consensus 229 ~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (537)
.++..++..+=.|.+. .+.. ..++.++...+..++++..++..+++++..++
T Consensus 168 ~~~l~~ia~wg~E~r~-------------------------~~~~---~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l 219 (403)
T PF03209_consen 168 ALLLNLIALWGQEPRR-------------------------SRRA---AAAERPRPPFREAWRQVWASPQARRFFVFLFL 219 (403)
T ss_pred HHHHHHHHHHhcccCC-------------------------cccc---cCCCCCCccHHHHHHHHHhCCChhHHHHHHHH
Confidence 2222222222222210 0000 00000011113444555555555554444443
Q ss_pred HHHHHhhhHHHHHHHHHHH-HHhc-----CCCC-ChhHHHHHHHHHHHHHhhhHhhhhc-ccCCcHHHHHhhHHHHHHHH
Q psy4866 309 AVFRAFTGVQSIIAYANTI-FASS-----ETFL-PSDYISILFAIILLVSIFPSTYYID-RAGRRVLFLVSSAGCSLFSF 380 (537)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~ 380 (537)
..+ .+++++. ++-+ +.+. +........+.+.+++....+++.. |.++++....++.+..+++.
T Consensus 220 ~t~---------a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~ 290 (403)
T PF03209_consen 220 GTL---------AFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFA 290 (403)
T ss_pred HHH---------HHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Confidence 333 2222322 2222 3332 3335666777888888888887765 67888888888888887777
Q ss_pred HHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy4866 381 IAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLM 460 (537)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 460 (537)
++..... ..+.+......++++++.+...... .+.+.+...+++.|..+|.....+.+...++..+.|.+
T Consensus 291 lii~a~~---------~~~~~~~~~~~~l~G~g~G~f~vga-ls~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~ 360 (403)
T PF03209_consen 291 LIILAGP---------LGSPWLFRPGVFLLGLGNGLFTVGA-LSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGAL 360 (403)
T ss_pred HHHHHHh---------cccchHHHHHHHHHHHhhhHHHHHH-HHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655432 2345666677777777766654443 36777888888899999999999999999999999988
Q ss_pred HHh
Q psy4866 461 DKH 463 (537)
Q Consensus 461 ~~~ 463 (537)
.|.
T Consensus 361 ~D~ 363 (403)
T PF03209_consen 361 RDL 363 (403)
T ss_pred HHH
Confidence 874
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.4e-14 Score=116.99 Aligned_cols=133 Identities=26% Similarity=0.324 Sum_probs=116.2
Q ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCC
Q psy4866 109 VVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISET 188 (537)
Q Consensus 109 ~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 188 (537)
+.+.+.++..++.++.|++.||+|||+.+..+..+..++.++..++++++.+.+.+++.|++.+...+....++.|.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (141)
T TIGR00880 3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP 82 (141)
T ss_pred EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence 34566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhHhHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHh-hcccC
Q psy4866 189 SIRGTIGTLFQISCHLGILYTYVLGSEL----SYMNYLTYSLIIPIIFTVTF-MFMPE 241 (537)
Q Consensus 189 ~~r~~~~~~~~~~~~~G~~i~~~l~~~~----~wr~~~~~~~~~~~~~~~~~-~~~~e 241 (537)
++|++..++......+|..+++.+.+.+ +|++.+++.++..++..+.. ++.||
T Consensus 83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 83 EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999998887663 79999998887776655444 34454
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-13 Score=125.45 Aligned_cols=184 Identities=14% Similarity=0.191 Sum_probs=148.6
Q ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHH
Q psy4866 296 RSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAG 374 (537)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 374 (537)
++.++..++..++.+...+..=-.+..-.|.+.++.+.+. +-+.+.+.+.+..-++.++.|.++||.+.|..+..++++
T Consensus 24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLil 103 (448)
T COG2271 24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLIL 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHH
Confidence 3445555666665555544444556666677777776663 455788888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHH
Q psy4866 375 CSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISY 454 (537)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 454 (537)
+++..+++++. ++.+...+...+-+.+.+.++.|.. ..+..-+|+++||+..++-|...++|+++.|
T Consensus 104 sai~nil~Gfs------------~s~~~~~~l~~lng~fQg~Gwpp~~-~~i~~Wfsr~eRG~~~siWn~shNiGGal~~ 170 (448)
T COG2271 104 SAIVNILFGFS------------PSLFLFAVLWVLNGWFQGMGWPPCA-RTITHWFSRKERGTWWSIWNTSHNIGGALAP 170 (448)
T ss_pred HHHHHHHHhhh------------hHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHcCccccCceEEEehhhhhcccchHH
Confidence 99999999884 3445566666777888888887754 8889999999999999999999999999999
Q ss_pred HHH--HHHHHhhccchhhhHhhHHHHHHHHHHHhhccCCC
Q psy4866 455 KLF--FLMDKHIGMYSNFLFGGVSSLVCTVYLYYFLLETK 492 (537)
Q Consensus 455 ~~~--g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (537)
.+. +.+..+.+|+..|++-++++++..+++++..+++.
T Consensus 171 ~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~P 210 (448)
T COG2271 171 LVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRP 210 (448)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999 89998889999999999999888888777766544
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-12 Score=126.14 Aligned_cols=352 Identities=16% Similarity=0.136 Sum_probs=206.4
Q ss_pred HHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCC-hhhHHHHHH----HHHHhhhhhhhHHhhhhhhhhHHHHHHHHHH
Q psy4866 70 TACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPN-EGSWVVAII----EIGNYLSPIPAGMLVNRIGRKWSLLMTGPIT 144 (537)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~s~~----~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~ 144 (537)
...+-.|..++......+..+.... .++.+.. ..+...... .+...+.++..|.++||+|||..+.+..+..
T Consensus 26 ~~fl~~fa~~l~~~~~~~~~~~~~c---t~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~ 102 (463)
T KOG2816|consen 26 LLFLYMFSWGLSSTVMTNVILYLAC---TFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGT 102 (463)
T ss_pred HHHHHHHHHHhcCcchhhhhhhhhc---ccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHH
Confidence 3344445555555555555555554 3332222 223333333 6778899999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhH--hhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh----hH
Q psy4866 145 TASWIIAMYSRSVLGLYVMRTLQGFS--MAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL----SY 218 (537)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~~r~l~G~~--~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~----~w 218 (537)
.+..+...+.. +|.++ +.|+. .+..+....++++|....++|....++....+..+..++|.+++.. +.
T Consensus 103 ~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~ 177 (463)
T KOG2816|consen 103 ILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGI 177 (463)
T ss_pred HHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCc
Confidence 88877777765 44433 33332 2445677889999999999999999999998888888888888763 55
Q ss_pred HHHHHHHHHHHHHHH-HHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccc
Q psy4866 219 MNYLTYSLIIPIIFT-VTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRS 297 (537)
Q Consensus 219 r~~~~~~~~~~~~~~-~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (537)
-..|.+..+..++.. ...+++||+-. ++.+.+ +. .+...... .........++...+..
T Consensus 178 a~~f~ia~~~~~~~~~y~~~~l~Esl~---~~~~~~-~~--~~~~~~~~--------------~~~~~~~~~~~~~~~~~ 237 (463)
T KOG2816|consen 178 ALVFLIAAASGILSLLYMLLFLPESLQ---EKERSD-AT--LRELTPGS--------------LDSSHVADAFQSLTKVG 237 (463)
T ss_pred hHHHHHHHHHHHHHHHHHhhccccccC---cccccc-cc--ccccCCCc--------------ccchhhhhhhhhhcccC
Confidence 667888777776655 44567888731 011000 00 00000000 00000011111111111
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hcCCCC-ChhHHHHHHHHHHHHHhhhHh-hhhcccCCcHHHHHhhHH
Q psy4866 298 NMKAFVFMAFLAVFRAFTGVQSIIAYANTIFA-SSETFL-PSDYISILFAIILLVSIFPST-YYIDRAGRRVLFLVSSAG 374 (537)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~g-~l~d~~~~~~~~~~~~~~ 374 (537)
..+..+.......+....-.....-..+.++. ..+++. ..+......+....++.++.. .+...++.|+....|...
T Consensus 238 ~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~ 317 (463)
T KOG2816|consen 238 PDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLS 317 (463)
T ss_pred CCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHH
Confidence 11111111111111100000000000011111 113332 222455556677777777666 778888989988888888
Q ss_pred HHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHH
Q psy4866 375 CSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISY 454 (537)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 454 (537)
..+....+++.. ..|.......+.... ....|...+..+....++.+|.+.++...+..+...++|
T Consensus 318 ~~~~~~~~af~~------------~~w~~~~~~v~~~~~--~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~ 383 (463)
T KOG2816|consen 318 EFLQLLLFAFAT------------ETWMMFAAGVVVALA--GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSP 383 (463)
T ss_pred HHHHHHHHHHhc------------cchhhhHHHHHHHhh--cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhH
Confidence 888888777742 333333333322222 233455568888888999999999999999999999999
Q ss_pred HHHHHHHHh
Q psy4866 455 KLFFLMDKH 463 (537)
Q Consensus 455 ~~~g~l~~~ 463 (537)
.+.+.+...
T Consensus 384 ~~~~~i~~~ 392 (463)
T KOG2816|consen 384 ALYGNIFAL 392 (463)
T ss_pred HHHHHHHHH
Confidence 999988654
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.1e-13 Score=138.67 Aligned_cols=137 Identities=12% Similarity=0.111 Sum_probs=120.8
Q ss_pred hHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccC
Q psy4866 107 SWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEIS 186 (537)
Q Consensus 107 ~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 186 (537)
.+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++...+++.+++.|++.++.++...++++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566777899999999999999999999999999999999999999998888889999999998889999999999999
Q ss_pred CCcccchhhhHhHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHhhcccCCh
Q psy4866 187 ETSIRGTIGTLFQISCHLGILYTYVLGSEL---SYMNYLTYSLIIPIIFTVTFMFMPESP 243 (537)
Q Consensus 187 ~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~---~wr~~~~~~~~~~~~~~~~~~~~~esp 243 (537)
|.++|++++++..+...+|.+++|++++.+ +...+|++.+++.++..++.+++||+.
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999998653 345677777777777777777789873
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.4e-13 Score=130.29 Aligned_cols=177 Identities=19% Similarity=0.143 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHH
Q psy4866 303 VFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFI 381 (537)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 381 (537)
.....+..+...........+.|.+.++.+.+. ..+.......++.+++.++.|+++||+|||+.+..+.++..++.++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 98 (398)
T TIGR00895 19 IILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLL 98 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 333333333333334556667777777776653 3446667778888999999999999999999999888877777666
Q ss_pred HHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4866 382 AGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMD 461 (537)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 461 (537)
+... .+.+..++..++.+.+.+. ..+...+++.|.+|++.|+++.++.+....+|..+++.+.+.+.
T Consensus 99 ~~~~------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 165 (398)
T TIGR00895 99 CALA------------TNVTQLLILRFLAGLGLGG-LMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI 165 (398)
T ss_pred HHHc------------cchHHHHHHHHHHhccccc-chhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 5542 2333444444555554443 34556689999999999999999999999999999999999999
Q ss_pred HhhccchhhhHhhHHHHHHHHHHHhhccCCC
Q psy4866 462 KHIGMYSNFLFGGVSSLVCTVYLYYFLLETK 492 (537)
Q Consensus 462 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (537)
+..||+..+.+.+++.++..++.+.+.+++.
T Consensus 166 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 166 PVFGWRSLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred hcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence 9999998888877666666666656666653
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.8e-13 Score=131.70 Aligned_cols=144 Identities=19% Similarity=0.244 Sum_probs=121.1
Q ss_pred CCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhh
Q psy4866 98 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVI 177 (537)
Q Consensus 98 ~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 177 (537)
+.+.+..+.|++.++..++..++.+++|++.||+|+|+.+.++.++.+++.++.+++++.+.+++.+++.|++.+...+.
T Consensus 256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~ 335 (420)
T PRK09528 256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG 335 (420)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 44667778899999999999999999999999999999999999999999889999999999999999999999888888
Q ss_pred hhhhhhccCCCcccchhhhH-hHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHH-hhcccC
Q psy4866 178 SPMYLGEISETSIRGTIGTL-FQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVT-FMFMPE 241 (537)
Q Consensus 178 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~~~~~~~~-~~~~~e 241 (537)
...++.|.+|++.|+...+. ++....+|.++++.+.+. .||+..|.+.+++.++..+. .+.+++
T Consensus 336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88999999999988877655 566777888888777765 48999999888877664443 334443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=129.59 Aligned_cols=140 Identities=14% Similarity=0.220 Sum_probs=117.4
Q ss_pred CChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHhHhhhhhhhh
Q psy4866 103 PNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR----SVLGLYVMRTLQGFSMAAIYVIS 178 (537)
Q Consensus 103 ~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~ 178 (537)
..+.+.+.++..++..++.++.|+++||+|||+++.++.++.+++..+..... +++.+++.+++.|++.+...+..
T Consensus 250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~ 329 (418)
T TIGR00889 250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISG 329 (418)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 36679999999999999999999999999999999999999988877666632 34667788999999999888998
Q ss_pred hhhhhccCCCcccchhhhHhH-HHHHHHHHHHHHHhhhh----------hHHHHHHHHHHHHHHHH-HHhhcccCC
Q psy4866 179 PMYLGEISETSIRGTIGTLFQ-ISCHLGILYTYVLGSEL----------SYMNYLTYSLIIPIIFT-VTFMFMPES 242 (537)
Q Consensus 179 ~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~l~~~~----------~wr~~~~~~~~~~~~~~-~~~~~~~es 242 (537)
..++.|++|+++|+++.++.+ ...++|.++||.+++.+ +|+..|.+.+++.++.. +..++++|+
T Consensus 330 ~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 330 SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999999999999999999997 66788998888888652 48999998888876654 444556665
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.3e-12 Score=125.49 Aligned_cols=152 Identities=11% Similarity=0.181 Sum_probs=123.4
Q ss_pred hhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy4866 87 PVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTL 166 (537)
Q Consensus 87 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l 166 (537)
...|.+.++ +++.+..+.+++.+...++..++.+++|+++||+|||+.+..+.+...+......++++++.+++.+++
T Consensus 237 ~~~p~~l~~--~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 314 (393)
T PRK15011 237 INMPLFIIN--ELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLL 314 (393)
T ss_pred HHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 345544432 789999999999888888888899999999999999998888777666665555667788888889999
Q ss_pred HHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhhcccC
Q psy4866 167 QGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFMFMPE 241 (537)
Q Consensus 167 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~~~~~~~~~~~~~e 241 (537)
.+++.+...+....+..|.+|+ +|++++++++....+|..+++.+++. ++|+..|++.+++.++.++..+++||
T Consensus 315 ~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 315 NAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9988888777778888999875 58999999888888888888877765 48999999888888887777776664
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.9e-11 Score=110.95 Aligned_cols=256 Identities=12% Similarity=0.107 Sum_probs=157.1
Q ss_pred chhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy4866 85 SAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMR 164 (537)
Q Consensus 85 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r 164 (537)
-+|.+-.+-+ ++|.+..|++.+....+....+...+.|.++||+|||+.-++-+++++++++ +-..++++.++++|
T Consensus 53 QGpY~Y~LY~---~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GR 128 (354)
T PF05631_consen 53 QGPYLYALYE---SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGR 128 (354)
T ss_pred hcchhHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHH
Confidence 3444444556 7899999999999999999999999999999999999999999999999886 45668999999999
Q ss_pred HHHHhHhhhhhhhhhhhh-hccC----CCcccchhhhHhH-HHHHHHHHHHHHHhhh----h--hHHHHHHHHHHHHHHH
Q psy4866 165 TLQGFSMAAIYVISPMYL-GEIS----ETSIRGTIGTLFQ-ISCHLGILYTYVLGSE----L--SYMNYLTYSLIIPIIF 232 (537)
Q Consensus 165 ~l~G~~~~~~~~~~~~~i-~~~~----~~~~r~~~~~~~~-~~~~~G~~i~~~l~~~----~--~wr~~~~~~~~~~~~~ 232 (537)
++.|++.+..+.+--++. .|.- |++..+..++... ...++-.+++.+++.. . +-..+|....++.++.
T Consensus 129 vlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~ 208 (354)
T PF05631_consen 129 VLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVA 208 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 999999999988887764 5542 2222233222222 1222223334444433 2 2366888877777665
Q ss_pred HHHh-hcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHHHHHH
Q psy4866 233 TVTF-MFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVF 311 (537)
Q Consensus 233 ~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (537)
.++. ...+|.+. +. .+..+.... -+..++.+.+++ +.+.+.....+
T Consensus 209 ~~~I~~~W~ENyg------~~------------~~~~~~~~~------------~~~a~~~i~~d~---ril~LG~~qsl 255 (354)
T PF05631_consen 209 AVLILKTWPENYG------DT------------SSSSSLSGS------------FREAWRAILSDP---RILLLGLIQSL 255 (354)
T ss_pred HHHHHhcccccCC------Cc------------ccccchHHH------------HHHHHHHHHcCc---hhHHHHHHHHH
Confidence 5443 33455420 00 000000000 011223333322 23444555556
Q ss_pred HHhhhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhhHhhhhc-ccCCcHHHHHhhHHHHHH
Q psy4866 312 RAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYID-RAGRRVLFLVSSAGCSLF 378 (537)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~ 378 (537)
.....+..+..|.|.+- ..+...+-+.++..+.+..++|+.+..++.. +......+.....+.+++
T Consensus 256 FE~smy~FVflWtPaL~-~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~~~aa~~ 322 (354)
T PF05631_consen 256 FEGSMYLFVFLWTPALD-PDDEELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVFAVAAVS 322 (354)
T ss_pred HHHHHHHheeeeeceec-CCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 66665666677777764 2222235567778888888899988866544 433334443333333333
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.6e-11 Score=111.78 Aligned_cols=341 Identities=11% Similarity=0.133 Sum_probs=212.2
Q ss_pred CCCCCCChhh-HHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhh
Q psy4866 98 PIPMSPNEGS-WVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYV 176 (537)
Q Consensus 98 ~~~~s~~~~~-~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 176 (537)
+.|++..|+. -+.-...-.+....++...+.|..|.|++++++.+...+..++..+.++...+-+..++-|++.+. ..
T Consensus 34 ~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-ev 112 (412)
T PF01770_consen 34 DKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EV 112 (412)
T ss_pred ccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HH
Confidence 3788888764 566666777888899999999999999999999999999999999999999999999999999766 57
Q ss_pred hhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHHHHHhhcccCChHHHHHhC
Q psy4866 177 ISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL------SYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKN 250 (537)
Q Consensus 177 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~------~wr~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~ 250 (537)
+.++++--..|+++-.++.+...++.-+|..++.++|..+ +.+...++......+.++..+++|..++-+.-++
T Consensus 113 ay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r 192 (412)
T PF01770_consen 113 AYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHR 192 (412)
T ss_pred HHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceec
Confidence 7889999999999999999999998888888888888763 5666767766666666666677776554222222
Q ss_pred CHHHHHHHHHhhcCCChhhHHHHHHHHHHhh--hhcccccchHHhhc---cchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy4866 251 QEGKAIESLKWLRNKTADQVQSELQIIKQNT--SKNVERTNFREFMG---RSNMKAFVFMAFLAVFRAFTGVQSIIAYAN 325 (537)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (537)
+..+... ......++.++..++..+.++.. .....+..++.+.+ .-...+.++...++.....+++..+..|..
T Consensus 193 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ 271 (412)
T PF01770_consen 193 KPPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQ 271 (412)
T ss_pred cCccccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHH
Confidence 1111000 00000000000000000000000 00000111111111 222233455566666666777888888888
Q ss_pred HHHHhcCCCC----ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhH--HHHHHHHHHHHHHHhhhccccCCccc
Q psy4866 326 TIFASSETFL----PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSA--GCSLFSFIAGLYYYVTIELQYEIPYT 399 (537)
Q Consensus 326 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (537)
.+.+...... -.+..-.+..+.+.++.+..|++..++.+...+.++.. +.+..++++.. ..+
T Consensus 272 ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~------------t~~ 339 (412)
T PF01770_consen 272 SLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSF------------TGN 339 (412)
T ss_pred HHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHH------------hhH
Confidence 8887772221 12344555666777788888888555555443333322 22333333322 235
Q ss_pred chhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHH
Q psy4866 400 SWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLIS 453 (537)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 453 (537)
.|......+++...+.+.. ++...-++.....+.-|..+|+.+++..+-..+.
T Consensus 340 Iwv~Y~~yIif~~~y~fli-TiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQtil 392 (412)
T PF01770_consen 340 IWVCYAGYIIFRSLYMFLI-TIASFQIAKNLSEERYALVFGINTFVALVLQTIL 392 (412)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccceeeeeeeHHHHHHHHHHhe
Confidence 6666677777777766544 3444555555566777888888877665554443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-12 Score=126.42 Aligned_cols=143 Identities=11% Similarity=0.076 Sum_probs=121.6
Q ss_pred hhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHH
Q psy4866 87 PVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSV--LGLYVMR 164 (537)
Q Consensus 87 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~--~~l~~~r 164 (537)
...+.+.+ +++.+..+.+++.+.+.++..++.++.|++.||+|||+.+.++.++.+++.++..+.++. ..+++..
T Consensus 226 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (377)
T TIGR00890 226 GLYKPYGQ---SLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATV 302 (377)
T ss_pred HHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHH
Confidence 34455666 788888899999999999999999999999999999999999999998888887776643 3345667
Q ss_pred HHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHH
Q psy4866 165 TLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIF 232 (537)
Q Consensus 165 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~~~~~ 232 (537)
++.|++.+...+....++.|.+|+++|+++.++......+|..++|.+.+. .+|++.|++.+++.++.
T Consensus 303 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 303 ALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 888998888888888899999999999999999999999999999988765 48999998888776654
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.43 E-value=2e-12 Score=127.23 Aligned_cols=351 Identities=15% Similarity=0.172 Sum_probs=200.0
Q ss_pred hhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhh---h--hhHHHHHHHHHHHHHHHHHHHHh----hH
Q psy4866 87 PVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI---G--RKWSLLMTGPITTASWIIAMYSR----SV 157 (537)
Q Consensus 87 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~---G--rr~~l~~~~~l~~~~~~~~~~~~----~~ 157 (537)
+..|.+.+ ++|+++++...+.+...+...+ -++.|.++|-+ | ||+.++++.++.+++.+..+..+ +.
T Consensus 11 ~~~~~l~~---~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~ 86 (433)
T PF03092_consen 11 AIYPFLKD---DLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSA 86 (433)
T ss_pred HHHHHHHH---HcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchh
Confidence 44567777 9999999999998888887765 46778999985 3 66677778887766666555533 56
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhhhccCC--CcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHH
Q psy4866 158 LGLYVMRTLQGFSMAAIYVISPMYLGEISE--TSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPII 231 (537)
Q Consensus 158 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~~~~ 231 (537)
....+.-++..+|.+....++-+++.|... ++.||...+.......+|.+++..+++. .+++..|.+.+++..+
T Consensus 87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l 166 (433)
T PF03092_consen 87 AIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLL 166 (433)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHH
Confidence 667777888899999999999999999873 3337788888888888888888877765 3788888888877776
Q ss_pred HHHHhhc-ccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHH-HHHHH
Q psy4866 232 FTVTFMF-MPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVF-MAFLA 309 (537)
Q Consensus 232 ~~~~~~~-~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 309 (537)
..+..++ .+|.+ .+..+ +. ....++. ....... .++.....++.++.+..+...+ ..++.
T Consensus 167 ~~~~~~~~~~e~~------~~~~~--~~-~~~~~~~---~~~~~~~------~~~~~~~l~~~~~~~~i~~~~~~~~~~~ 228 (433)
T PF03092_consen 167 MLIVALFLLEERK------VRPAD--EV-FSFGKEE---VPCLFGS------FREQLSELWRALQQRAIWQPILFFIFFF 228 (433)
T ss_pred HHHHHHHhhhhcc------ccccc--hh-hcccccc---cchhhHH------HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5544444 34311 00000 00 0000000 0000000 0000122233333322222222 11111
Q ss_pred HHHHhhhHHH-HHHHHHHHHHhcCCCCChh---HHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHH
Q psy4866 310 VFRAFTGVQS-IIAYANTIFASSETFLPSD---YISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLY 385 (537)
Q Consensus 310 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (537)
.+..... .. ..++...... |...+.. ....+..++.++|..+......+..-|+++....++..+..+.-...
T Consensus 229 ~~~~~~~-~a~~fy~~~~~~~--gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~l 305 (433)
T PF03092_consen 229 NLPPSIS-SASSFYFQTDALG--GPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLL 305 (433)
T ss_pred HhccCCC-CccEEEEEecccc--ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEE
Confidence 1110000 01 1111111111 1111222 23344455556666666655555666666665555444333221111
Q ss_pred HHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4866 386 YYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG 465 (537)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 465 (537)
. .......+.++. +..+.-..+........+.|.. ..++|+.|+..-|+.+++...+.++|..++..+...+.+..|
T Consensus 306 v-~~~n~~~Gi~d~-~f~lgd~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 306 V-TRWNLDLGIPDQ-WFALGDTILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred E-EEEeeeeCcCCe-EEEEEhHHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0 000000111122 3334444555555555566654 789999999999999999999999999999999988887765
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.2e-12 Score=127.22 Aligned_cols=172 Identities=19% Similarity=0.246 Sum_probs=127.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHH
Q psy4866 306 AFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGL 384 (537)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 384 (537)
..+..+..+.....+..+.|.+.++.+.+. +.+.......++..++.++.|++.||+|||+.+..+.++.+++.++...
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 107 (434)
T PRK11663 28 MYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGF 107 (434)
T ss_pred HHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 333333333333455677888888877763 3457777888899999999999999999999999998888888776655
Q ss_pred HHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4866 385 YYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHI 464 (537)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 464 (537)
. .+.+...+..++.+.+.+... +....++.|.+|+++|++++++.+....+|..+++.+.+.+.+..
T Consensus 108 ~------------~~~~~l~~~~~l~g~~~g~~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 174 (434)
T PRK11663 108 S------------SSLWAFALLWVLNAFFQGWGW-PVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY 174 (434)
T ss_pred H------------hHHHHHHHHHHHHHHHHHccc-hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3 223333333444455555444 445588899999999999999999999999999999999999999
Q ss_pred ccchhhhHhhHHHHHHHHHHHhhccC
Q psy4866 465 GMYSNFLFGGVSSLVCTVYLYYFLLE 490 (537)
Q Consensus 465 g~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (537)
||++.|.+.+++.++..++..+++++
T Consensus 175 gw~~~f~~~~i~~~~~~~~~~~~~~~ 200 (434)
T PRK11663 175 GWRYGMMIAGIIAIVVGLFLCWRLRD 200 (434)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999988777666555544445554
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=9e-12 Score=122.96 Aligned_cols=150 Identities=10% Similarity=0.101 Sum_probs=123.7
Q ss_pred hhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy4866 87 PVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTL 166 (537)
Q Consensus 87 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l 166 (537)
..+|.+.. +.+. .+.++..+.+.++..++.++.|++.||+|+|+.+..+.++.+++.++..+.++.+.+++.+++
T Consensus 237 ~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (399)
T PRK05122 237 TFITLYYA---ARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAAL 311 (399)
T ss_pred HHHHHHHH---Hccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34444445 4454 345677788889999999999999999999999999999888888888888888888899999
Q ss_pred HHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhhcccC
Q psy4866 167 QGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFMFMPE 241 (537)
Q Consensus 167 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~~~~~~~~~~~~~e 241 (537)
.|++.+...+.....+.|.+|+++|+++.++++....+|..+++.+.+. .+|++.|++.++..++..+..+++++
T Consensus 312 ~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 312 TGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999888888888899999999999999999998888887766655 38999999988887776655555543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7e-12 Score=124.08 Aligned_cols=149 Identities=18% Similarity=0.169 Sum_probs=125.4
Q ss_pred hHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy4866 88 VLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQ 167 (537)
Q Consensus 88 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~ 167 (537)
.+|.+.+ +.|.+..+.+++.+.+.++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+.-++.
T Consensus 242 ~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (406)
T PRK11551 242 WLPSLLV---GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAA 318 (406)
T ss_pred HHHHHHH---hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4577777 7899999999999999999999999999999999999999888777777777777777888888888899
Q ss_pred HhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHHHHHHHHhhcc
Q psy4866 168 GFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-----SYMNYLTYSLIIPIIFTVTFMFM 239 (537)
Q Consensus 168 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~-----~wr~~~~~~~~~~~~~~~~~~~~ 239 (537)
|++.++..+...+++.|.+|+++|+++.++.+....+|..++|.+++.+ +|...++......++..+..+++
T Consensus 319 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 319 GLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888999999999999999999999999999999999998774 45666666665555555444444
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.6e-12 Score=122.69 Aligned_cols=162 Identities=19% Similarity=0.283 Sum_probs=141.3
Q ss_pred hhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhH-HHHHHHHHHHHHHHHHHHH
Q psy4866 76 FTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKW-SLLMTGPITTASWIIAMYS 154 (537)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~-~l~~~~~l~~~~~~~~~~~ 154 (537)
+.............|.+.++ .++.+..+.+++.+...++..++.++.|++.||+|||+ .+..+.++..++.++..+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 262 (352)
T cd06174 185 FLLSFGYYGLLTYLPLYLQE--VLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA 262 (352)
T ss_pred HHHHhHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 33344444555666777762 34889999999999999999999999999999999999 9999999999999999999
Q ss_pred hhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHH
Q psy4866 155 RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPI 230 (537)
Q Consensus 155 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~~~ 230 (537)
++.+.+.+..++.|++.+...+....++.|..|+++|++.+++......+|..+++.+.+. .+|+..+++.+++.+
T Consensus 263 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~ 342 (352)
T cd06174 263 PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALAL 342 (352)
T ss_pred ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988876 389999999998888
Q ss_pred HHHHHhhcc
Q psy4866 231 IFTVTFMFM 239 (537)
Q Consensus 231 ~~~~~~~~~ 239 (537)
+..+..+++
T Consensus 343 i~~i~~~~~ 351 (352)
T cd06174 343 LAALLLLLL 351 (352)
T ss_pred HHHHHheec
Confidence 776655443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-11 Score=121.78 Aligned_cols=181 Identities=15% Similarity=0.082 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHH
Q psy4866 300 KAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLF 378 (537)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 378 (537)
+..++..++.++........+....|.+.++.+.+. +.++......++..++.++.|++.||+|||+.+..+.++..++
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~ 86 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIA 86 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 334444444544444445555566676666666653 3457777888899999999999999999999999998888888
Q ss_pred HHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHH
Q psy4866 379 SFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFF 458 (537)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g 458 (537)
.++..+. .+.+..++.-++.+.+.+.. .+....++.|.+|+++|++++++.+....+|..+++.+.+
T Consensus 87 ~~~~~~~------------~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~ 153 (412)
T TIGR02332 87 STATMFA------------TGPESLYLLRILVGIAEAGF-LPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSG 153 (412)
T ss_pred HHHHHHh------------cCHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777653 23344445555556655543 3555578899999999999999999999999999999999
Q ss_pred HHHH------hhccchhhhHhhHHHHHHHHHHHhhccCCCC
Q psy4866 459 LMDK------HIGMYSNFLFGGVSSLVCTVYLYYFLLETKG 493 (537)
Q Consensus 459 ~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (537)
++.+ ..||++.|.+.++..++..++.++++||+++
T Consensus 154 ~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 154 YILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 8875 3589999998887777766666667777653
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-11 Score=117.97 Aligned_cols=146 Identities=10% Similarity=0.051 Sum_probs=125.0
Q ss_pred chhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy4866 85 SAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMR 164 (537)
Q Consensus 85 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r 164 (537)
.....|.+.+ ++|.+..+.|++.+...++..++.+++|++.||+|+|+.+.++.++.++..++.+++++.+.+++.+
T Consensus 224 ~~~~~~~~l~---~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q 300 (382)
T TIGR00902 224 YYGFSAIYWQ---AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQ 300 (382)
T ss_pred HHHHHHHHHH---HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Confidence 3445566677 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhH-HHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHH
Q psy4866 165 TLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQ-ISCHLGILYTYVLGSEL----SYMNYLTYSLIIPIIFTVT 235 (537)
Q Consensus 165 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~l~~~~----~wr~~~~~~~~~~~~~~~~ 235 (537)
+++|++.+...+....++.+. |+++|++..++++ ...++|..+++.+++.+ ++ ..|++.+.++++..++
T Consensus 301 ~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 301 ILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999998 9989999999875 46778888888887664 54 4566666666554433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=6e-12 Score=124.09 Aligned_cols=162 Identities=17% Similarity=0.173 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCC
Q psy4866 318 QSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEI 396 (537)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (537)
..+....|.+.++.+.+. +.++......++..++.++.|++.||+|||+.+..+.++..++.+++.+.
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~----------- 79 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA----------- 79 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-----------
Confidence 344555566666666653 45577888899999999999999999999999998888888777766553
Q ss_pred cccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhHH
Q psy4866 397 PYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVS 476 (537)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 476 (537)
.+.+..++..++.+.+.+.. .+....++.|.+|+++|++++++.+....+|..+++.+.+.+.+..+|+..|.+.+++
T Consensus 80 -~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (399)
T TIGR00893 80 -GAYVSLYILRVLLGAAEAPF-FPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVL 157 (399)
T ss_pred -cCHHHHHHHHHHHHHHHHhh-hhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 23445555556666665544 4555689999999999999999999999999999999999999999999988888877
Q ss_pred HHHHHHHHHhhccCCC
Q psy4866 477 SLVCTVYLYYFLLETK 492 (537)
Q Consensus 477 ~~~~~~~~~~~~~~~~ 492 (537)
.++..++.+...++++
T Consensus 158 ~~~~~~~~~~~~~~~~ 173 (399)
T TIGR00893 158 GIIWGVLWLKFIPDPP 173 (399)
T ss_pred HHHHHHHhhheecCCC
Confidence 7776666555555544
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-11 Score=118.60 Aligned_cols=142 Identities=14% Similarity=0.238 Sum_probs=120.4
Q ss_pred CCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhh
Q psy4866 98 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVI 177 (537)
Q Consensus 98 ~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 177 (537)
++|.++.+.+++.+...+...++.++.|++.||+|||+++.++.++..+..+...+.++.+.+.+.+++.|++.+...+.
T Consensus 229 ~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 308 (375)
T TIGR00899 229 ELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGI 308 (375)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999988888888888999999999999999998888777766666667788888888999999999988888
Q ss_pred hhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhhccc
Q psy4866 178 SPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFMFMP 240 (537)
Q Consensus 178 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~~~~~~~~~~~~~ 240 (537)
...++.|..|+ +++++.++++....+|..+++.+++. .+|+..|++.++..++..+...+++
T Consensus 309 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 374 (375)
T TIGR00899 309 GMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIK 374 (375)
T ss_pred HHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheec
Confidence 88899998876 56799999998888999998888765 4899999998888877776666554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-11 Score=120.34 Aligned_cols=165 Identities=11% Similarity=0.089 Sum_probs=119.2
Q ss_pred HhhhHHHHHHHHHHHHHh-cCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhh
Q psy4866 313 AFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTI 390 (537)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (537)
...+......+++.++++ .+.+. +.++......++.+++.++.|+++||+|||+.+..+.++..++.+.+.+.
T Consensus 19 ~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~----- 93 (395)
T PRK10054 19 LTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV----- 93 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH-----
Confidence 334456666777777754 46652 45566777778889999999999999999999988888777776665543
Q ss_pred ccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Q psy4866 391 ELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNF 470 (537)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~ 470 (537)
++.+..++...+.+.... ...+....+..|..|+++|+++.|+.+...++|.+++|.+.+.+.+ .||+..|
T Consensus 94 -------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f 164 (395)
T PRK10054 94 -------NNVTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPF 164 (395)
T ss_pred -------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHH
Confidence 123333333333343333 2345556888999999999999999999999999999999998875 6899888
Q ss_pred hHhhHHHHHHHHHHHhhccCC
Q psy4866 471 LFGGVSSLVCTVYLYYFLLET 491 (537)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~ 491 (537)
.+.+++.++..++..++.++.
T Consensus 165 ~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 165 WLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 888777777665554555443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-11 Score=118.77 Aligned_cols=159 Identities=14% Similarity=0.105 Sum_probs=120.7
Q ss_pred HHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcc
Q psy4866 320 IIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPY 398 (537)
Q Consensus 320 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (537)
.....|.+.++.+.+. +.++......++..++.+..|++.||+|||+.+..+..+..++.+...+. +
T Consensus 28 ~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------~ 95 (390)
T PRK03545 28 PVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA------------W 95 (390)
T ss_pred HHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh------------c
Confidence 3344677777777653 34466667777888889999999999999999999988888887766553 2
Q ss_pred cchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhHHHH
Q psy4866 399 TSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSL 478 (537)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 478 (537)
+.+..++.-++.+.+.+. ..+...+++.+.+|+++|++++|+......+|..++|.+.+.+.+..||++.|++.+++++
T Consensus 96 ~~~~l~~~r~~~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~ 174 (390)
T PRK03545 96 NFTVLLISRIGIAFAHAI-FWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGAL 174 (390)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHH
Confidence 334444444444444433 3345557889999999999999999999999999999999999999999999999888877
Q ss_pred HHHHHHHhhccCC
Q psy4866 479 VCTVYLYYFLLET 491 (537)
Q Consensus 479 ~~~~~~~~~~~~~ 491 (537)
+..++.+...|+.
T Consensus 175 l~~~~~~~~~~~~ 187 (390)
T PRK03545 175 ITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHhCCCC
Confidence 7766655555543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=121.17 Aligned_cols=164 Identities=13% Similarity=0.074 Sum_probs=124.4
Q ss_pred hHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhcccc
Q psy4866 316 GVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQY 394 (537)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (537)
+........|.+.++.+.+. +.+.......++..++.++.|++.||+|||+.+..+.++..++.+.....
T Consensus 20 ~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--------- 90 (385)
T TIGR00710 20 GIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS--------- 90 (385)
T ss_pred HHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH---------
Confidence 34455555677777777653 44577777888999999999999999999999999888888777766552
Q ss_pred CCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhh
Q psy4866 395 EIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGG 474 (537)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 474 (537)
++.+...+..++.+.+.+.. .+...+++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..||+..+.+.+
T Consensus 91 ---~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~ 166 (385)
T TIGR00710 91 ---NNIETLLVLRFVQAFGASAG-SVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLS 166 (385)
T ss_pred ---ccHHHHHHHHHHHHcchhHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 23334444444455444443 34455888999999999999999999999999999999999999899998888888
Q ss_pred HHHHHHHHHHHhhccCCC
Q psy4866 475 VSSLVCTVYLYYFLLETK 492 (537)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~ 492 (537)
++.++..+..+...||++
T Consensus 167 ~~~~~~~~~~~~~~~~~~ 184 (385)
T TIGR00710 167 LAGILLSALIFFILPETL 184 (385)
T ss_pred HHHHHHHHHHHHhCCCCC
Confidence 777777666655566544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4e-11 Score=112.73 Aligned_cols=174 Identities=17% Similarity=0.123 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHH
Q psy4866 303 VFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFI 381 (537)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 381 (537)
++...+..+......+...-.+|.+-++.+.+. .++...+.++.+..++.++...+.||+.||++++....++.++.++
T Consensus 15 l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l 94 (394)
T COG2814 15 LLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLL 94 (394)
T ss_pred HHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHH
Confidence 333444444444446677778889888888874 4568889999999999999999999999999999999999999988
Q ss_pred HHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4866 382 AGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMD 461 (537)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 461 (537)
.++. .+.+..++.=++.+...+. +.++..++..++.|+++|++++++.+....+...+|.++..++-
T Consensus 95 ~alA------------p~f~~Ll~aR~~~g~a~G~-f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig 161 (394)
T COG2814 95 SALA------------PSFAVLLLARALAGLAHGV-FWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLG 161 (394)
T ss_pred HHHh------------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHH
Confidence 8774 3455555555566666555 44566799999999999999999999999999999999999999
Q ss_pred HhhccchhhhHhhHHHHHHHHHHHhhcc
Q psy4866 462 KHIGMYSNFLFGGVSSLVCTVYLYYFLL 489 (537)
Q Consensus 462 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 489 (537)
|..||+.+|++.+++.++..+..+..+|
T Consensus 162 ~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 162 QLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999998888888
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-11 Score=120.09 Aligned_cols=146 Identities=10% Similarity=0.068 Sum_probs=122.6
Q ss_pred hhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy4866 87 PVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTL 166 (537)
Q Consensus 87 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l 166 (537)
...|.+.+ +.+.+ +.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++..++
T Consensus 237 ~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (392)
T PRK12382 237 TFVSLYFA---SKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAAL 311 (392)
T ss_pred HHHHHHHH---hcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 34445555 45554 35667778888889999999999999999999999999999988888888888888899999
Q ss_pred HHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhh
Q psy4866 167 QGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFM 237 (537)
Q Consensus 167 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~~~~~~~~~~ 237 (537)
.|++.+...+...+.+.|.+|+++|+++.++++....+|..+++.+.+. .+|+..|.+.+++.++..+..+
T Consensus 312 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 312 TGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 9999998888888888999999999999999999999999998887765 4899999998888777655444
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.35 E-value=8e-12 Score=124.90 Aligned_cols=148 Identities=14% Similarity=0.112 Sum_probs=121.3
Q ss_pred cchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhh--hhhhHHHHH--HHHHHHHHHHHHHHHhhHHH
Q psy4866 84 WSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR--IGRKWSLLM--TGPITTASWIIAMYSRSVLG 159 (537)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr--~Grr~~l~~--~~~l~~~~~~~~~~~~~~~~ 159 (537)
.....+|.+.+ ++|.+..+.+++.++..++..++.++.|+++|| +++|+...+ +.++.+++.+++.++++++.
T Consensus 259 ~~~~~l~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 335 (455)
T TIGR00892 259 APIIFLVPYAK---DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTG 335 (455)
T ss_pred chHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 34445677777 789999999999999999999999999999998 334433333 34444555566677889999
Q ss_pred HHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHHHHHHH
Q psy4866 160 LYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-----SYMNYLTYSLIIPIIFTV 234 (537)
Q Consensus 160 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~-----~wr~~~~~~~~~~~~~~~ 234 (537)
+++.+++.|++.+...+...+++.|.+|++++++.+++++....+|.+++|.+++.+ +|++.|++.+++.++..+
T Consensus 336 ~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 336 LVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888753 599999988887665444
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.5e-11 Score=117.14 Aligned_cols=178 Identities=11% Similarity=0.052 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHH
Q psy4866 300 KAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLF 378 (537)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 378 (537)
++.+....+..+.............|.+.++.+.+. +.+.......++..++.++.|+++||+|||+.+..+.++.+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 90 (405)
T TIGR00891 11 WNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAG 90 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344444445455444455666667777777777663 4557777888999999999999999999999999988888777
Q ss_pred HHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHH
Q psy4866 379 SFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFF 458 (537)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g 458 (537)
.++..+. .+.+..++..++.+.+.+... +...+++.|.+|+++|+++.++.+....+|..+++.+.+
T Consensus 91 ~~~~~~~------------~~~~~l~~~~~l~G~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 157 (405)
T TIGR00891 91 TLACGFA------------PGYITMFIARLVIGIGMGGEY-GSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYS 157 (405)
T ss_pred HHHHHHh------------ccHHHHHHHHHHHHhhhhhhh-HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666542 233444455555555554433 445588899999999999999999999999999999999
Q ss_pred HHHHhhc--cchhhhHhhHHHHHHHHHHHhhccCC
Q psy4866 459 LMDKHIG--MYSNFLFGGVSSLVCTVYLYYFLLET 491 (537)
Q Consensus 459 ~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (537)
.+.+..+ |+..|.+.++..++. ++.....||+
T Consensus 158 ~l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~ 191 (405)
T TIGR00891 158 LVVPVWGDGWRALFFISILPIIFA-LWLRKNIPEA 191 (405)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCC
Confidence 9888766 777776654444333 3333444554
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.4e-11 Score=116.18 Aligned_cols=160 Identities=13% Similarity=0.089 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCc
Q psy4866 319 SIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIP 397 (537)
Q Consensus 319 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (537)
.....+|.+.++.+.+. +.+.......++..++.++.|++.||+|||+.+..+.++.+++.++....
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------------ 105 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA------------ 105 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH------------
Confidence 33345677777777653 34566677888889999999999999999999999999988877666542
Q ss_pred ccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhHHH
Q psy4866 398 YTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSS 477 (537)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 477 (537)
.+.+..++.-++.+.+.+. ..+....++.|.+|+++|+.+.++.....++|..++|.+.+.+.+..||+..|++.+++.
T Consensus 106 ~~~~~l~~~r~l~G~~~g~-~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~ 184 (394)
T PRK10213 106 NSFSLLLIGRACLGLALGG-FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMG 184 (394)
T ss_pred ChHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2344455555555666554 345566888999999999999999999999999999999999999999999998887766
Q ss_pred HHHHHHHHhhccCC
Q psy4866 478 LVCTVYLYYFLLET 491 (537)
Q Consensus 478 ~~~~~~~~~~~~~~ 491 (537)
+++.++.....|+.
T Consensus 185 ~~~~l~~~~~~p~~ 198 (394)
T PRK10213 185 VLCIFWIIKSLPSL 198 (394)
T ss_pred HHHHHHHHHHCCCC
Confidence 66555444444543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-11 Score=121.13 Aligned_cols=132 Identities=18% Similarity=0.159 Sum_probs=115.5
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhcc
Q psy4866 106 GSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEI 185 (537)
Q Consensus 106 ~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 185 (537)
.+.+.+++.++..++.++.|+++||+|||+.+..+.++..++.+...+.++.+.+++.+++.|++.+...+...+++.+.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 46667777888889999999999999999999999888888888888888888899999999999999999999999999
Q ss_pred CCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhh
Q psy4866 186 SETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFM 237 (537)
Q Consensus 186 ~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~~~~~~~~~~ 237 (537)
.|+++||+.+++......+|..++|.+++. .+|+..|++.+++.++..+..+
T Consensus 340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888876 3899999999888777655444
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.2e-11 Score=120.56 Aligned_cols=177 Identities=14% Similarity=0.058 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHH
Q psy4866 303 VFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFI 381 (537)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 381 (537)
+....+..+....-...+..-+|.+.++.+.+. +..+....+.++..++.++.|+++||+|||+.+..+.++..++.++
T Consensus 8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~ 87 (495)
T PRK14995 8 LVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLA 87 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 344444444444445667777888888776653 4557777788888889999999999999999999999998888877
Q ss_pred HHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccC-CccccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy4866 382 AGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYF-SSNMKAVSCAVINILCTTLGLISYKLFFLM 460 (537)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 460 (537)
.+.. .+.+..++.-.+.+.+.+.. .+.....+.+.+ |+++|++++|+......+|..++|.+.+.+
T Consensus 88 ~~~a------------~~~~~li~~r~l~G~g~~~~-~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l 154 (495)
T PRK14995 88 AAFS------------PTASWLIATRALLAIGAAMI-VPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGIL 154 (495)
T ss_pred HHHc------------CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7653 33444444445556555443 333334555554 678999999999999999999999999999
Q ss_pred HHhhccchhhhHhhHHHHHHHHHHHhhccCCC
Q psy4866 461 DKHIGMYSNFLFGGVSSLVCTVYLYYFLLETK 492 (537)
Q Consensus 461 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (537)
.++.||++.|++...++++..++..++.|+.+
T Consensus 155 ~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 155 LEHFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred hccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999888777777766666666543
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.7e-11 Score=118.21 Aligned_cols=176 Identities=15% Similarity=0.101 Sum_probs=128.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHH
Q psy4866 304 FMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIA 382 (537)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 382 (537)
.+.....+....+.......+|.+.++.+.+. ..+.......++..++.++.|+++||+|||+.+..+.++..++.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~ 85 (392)
T PRK10473 6 LCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLC 85 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 33444444444455566677888888777653 33356667778889999999999999999999998888877777665
Q ss_pred HHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4866 383 GLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 462 (537)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 462 (537)
... ++.+..++..++.+.+.+.. .+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+
T Consensus 86 ~~~------------~~~~~~~~~~~l~g~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~ 152 (392)
T PRK10473 86 SLA------------ETSSLFLAGRFLQGIGAGCC-YVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML 152 (392)
T ss_pred HHh------------CcHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 542 22233333444444444332 33456888999999999999999999999999999999998888
Q ss_pred hhccchhhhHhhHHHHHHHHHHHhhccCCC
Q psy4866 463 HIGMYSNFLFGGVSSLVCTVYLYYFLLETK 492 (537)
Q Consensus 463 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (537)
..||+..+.+.+++.++..++.+.+.+|++
T Consensus 153 ~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 153 KFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred CcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 889998888888877777776666666654
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.2e-11 Score=117.99 Aligned_cols=145 Identities=15% Similarity=0.146 Sum_probs=110.3
Q ss_pred cchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHH--HHHHHH--hhHHH
Q psy4866 84 WSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASW--IIAMYS--RSVLG 159 (537)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~--~~~~~~--~~~~~ 159 (537)
.....+|.+.++ +++.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+..+.. ++..+. ++.+.
T Consensus 237 ~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (394)
T TIGR00883 237 LITTYLPTYLTQ--TLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTL 314 (394)
T ss_pred HHHHHHHHHHHH--hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence 344556666532 788999999999999999999999999999999999998776554444333 222222 46677
Q ss_pred HHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhH-hHHHHHHHHHHHHHHhhhh----h-HHHHHHHHHHHHH
Q psy4866 160 LYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTL-FQISCHLGILYTYVLGSEL----S-YMNYLTYSLIIPI 230 (537)
Q Consensus 160 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~l~~~~----~-wr~~~~~~~~~~~ 230 (537)
+++..++.|++.+...+...+++.|.+|+++|+++.++ ...+..+|..++|.+++.+ + |+..++..+...+
T Consensus 315 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 315 FFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 77888999999989999999999999999999999987 4556667877887777653 5 7777666555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.1e-11 Score=114.89 Aligned_cols=146 Identities=16% Similarity=0.146 Sum_probs=118.3
Q ss_pred hhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy4866 87 PVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTL 166 (537)
Q Consensus 87 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l 166 (537)
..+|.+.+ +.|.+..+.+++.+.+.++..+++++.|++.||+|+|+++..+.++..++.+... . ........++
T Consensus 221 ~~lp~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l 294 (381)
T PRK03633 221 GLMPLYLN---HQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFI 294 (381)
T ss_pred HHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHH
Confidence 34677777 7788999999999999999999999999999999999999988888777665443 2 2334457788
Q ss_pred HHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHhhc
Q psy4866 167 QGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL----SYMNYLTYSLIIPIIFTVTFMF 238 (537)
Q Consensus 167 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~----~wr~~~~~~~~~~~~~~~~~~~ 238 (537)
.|++.....|...+++.|..|+++++.+.+.+..+.++|..++|.+++.+ +|++.|.+.+.+.++..+..+.
T Consensus 295 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 295 LGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence 88887888899999999999888888888888888899999998888764 7899999888777665554443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.7e-11 Score=123.00 Aligned_cols=170 Identities=16% Similarity=0.140 Sum_probs=130.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHh
Q psy4866 310 VFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYV 388 (537)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (537)
.+.............|.+.++.+.+. +.++......++.+++.++.|++.||+|||+.+..+.++..++.++....
T Consensus 11 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--- 87 (485)
T TIGR00711 11 TFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA--- 87 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc---
Confidence 33333345566677888888877653 45577888899999999999999999999999999988888877766542
Q ss_pred hhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q psy4866 389 TIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYS 468 (537)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 468 (537)
.+.+..++..++.+.+.+. ..+...+++.|.+|+++|+++.++......+|..++|.+.+++.++.||++
T Consensus 88 ---------~~~~~l~~~~~~~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~ 157 (485)
T TIGR00711 88 ---------PNLELMIIFRVIQGFGGGP-LIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRW 157 (485)
T ss_pred ---------CCHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCcee
Confidence 2334444444455554443 345566899999999999999999999999999999999999999999999
Q ss_pred hhhHhhHHHHHHHHHHHhhccCCC
Q psy4866 469 NFLFGGVSSLVCTVYLYYFLLETK 492 (537)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~ 492 (537)
.|++.+.+.++..++..++.++++
T Consensus 158 ~f~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 158 IFLINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred hhhhhhHHHHHHHHHHHHHcCCcc
Confidence 998887777777666656666543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.5e-11 Score=117.37 Aligned_cols=162 Identities=13% Similarity=0.135 Sum_probs=110.6
Q ss_pred HHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcc
Q psy4866 320 IIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPY 398 (537)
Q Consensus 320 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (537)
+....|.+.++ +.+. +.+.......++..++.++.|+++||+|+|+.+..+.++.+++.+++.+.... ..
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~--------~~ 118 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA--------TS 118 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcc--------cc
Confidence 44556665554 6552 44467777889999999999999999999999999988888877766553100 01
Q ss_pred cchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHH-HHHHHHHHHHhhccchhhhHhhHHH
Q psy4866 399 TSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLI-SYKLFFLMDKHIGMYSNFLFGGVSS 477 (537)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~-~~~~~g~l~~~~g~~~~~~~~~~~~ 477 (537)
+.+..++...+.+.+.+... +.....+.+.+|+++|++++|+.+....+|+.+ +|.+...+....||+..|++.+++.
T Consensus 119 ~~~~~~~~~~l~gi~~g~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~ 197 (452)
T PRK11273 119 SIAVMFVLLFLCGWFQGMGW-PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAA 197 (452)
T ss_pred cHHHHHHHHHHHHHHHhccc-hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 22233444445555555444 333467788899999999999999999888754 4443333333448888888887777
Q ss_pred HHHHHHHHhhccCC
Q psy4866 478 LVCTVYLYYFLLET 491 (537)
Q Consensus 478 ~~~~~~~~~~~~~~ 491 (537)
++..++..++.+++
T Consensus 198 ~~~~~l~~~~~~~~ 211 (452)
T PRK11273 198 ILVALFAFAMMRDT 211 (452)
T ss_pred HHHHHHHHHHccCC
Confidence 77666665666654
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-11 Score=120.44 Aligned_cols=163 Identities=15% Similarity=0.212 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccC
Q psy4866 317 VQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYE 395 (537)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (537)
...+....|.+.++.+.+. +.+....+..++..++.++.|+++||+|||+.+..+.++..++.+++.+.
T Consensus 11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------- 80 (379)
T TIGR00881 11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS---------- 80 (379)
T ss_pred HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh----------
Confidence 3445555677666666653 45577788889999999999999999999999999988888887776653
Q ss_pred CcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHH-HHHHHHHHhhccchhhhHhh
Q psy4866 396 IPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISY-KLFFLMDKHIGMYSNFLFGG 474 (537)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~-~~~g~l~~~~g~~~~~~~~~ 474 (537)
.+.+..++..++.+.+.+.. .+...+++.|.+|+++|+++.++.+....+|..+++ .+.+.+.+..+|+..|.+.+
T Consensus 81 --~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (379)
T TIGR00881 81 --TSLWVMAALWALNGIFQGMG-WPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPG 157 (379)
T ss_pred --hhHHHHHHHHHHHHhhcccc-CCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 23344444555555554443 455668999999999999999999999999999999 46666667778988888877
Q ss_pred HHHHHHHHHHHhhccCCC
Q psy4866 475 VSSLVCTVYLYYFLLETK 492 (537)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~ 492 (537)
++.++..++.+.+.++.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 158 IIAIIVSLICFLLLRDSP 175 (379)
T ss_pred HHHHHHHHHHheeeCCCc
Confidence 777766666655555543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-10 Score=114.38 Aligned_cols=159 Identities=11% Similarity=0.117 Sum_probs=113.9
Q ss_pred hhhHHHHHHHHHHHHHhc-CCCC-ChhHHHHHHHHHHHHHhhhHhhhhccc-CCcHHHHHhhHHHHHHHHHHHHHHHhhh
Q psy4866 314 FTGVQSIIAYANTIFASS-ETFL-PSDYISILFAIILLVSIFPSTYYIDRA-GRRVLFLVSSAGCSLFSFIAGLYYYVTI 390 (537)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (537)
...++.+..++|.++.+. +.+. ++......+.....++.+++|+++||+ |||+.+..+.++..++.+++...
T Consensus 22 ~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~----- 96 (493)
T PRK15462 22 YFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS----- 96 (493)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh-----
Confidence 334667778888887664 5542 344566667778888999999999999 99999999998888887655431
Q ss_pred ccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCcc--ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q psy4866 391 ELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSN--MKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYS 468 (537)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 468 (537)
........+.+.+...+.+. ..+...+++.|.+|++ .|.++.++.+...++|++++|.+.+++.+..||+.
T Consensus 97 ------~~~~~~~~l~l~li~iG~G~-~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~ 169 (493)
T PRK15462 97 ------EIHPSFLYLSLAIIVCGYGL-FKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAM 169 (493)
T ss_pred ------hcchhHHHHHHHHHHHhccc-ccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHH
Confidence 01112222222333333333 2344458899999876 69999999999999999999999999999999999
Q ss_pred hhhHhhHHHHHHHHHH
Q psy4866 469 NFLFGGVSSLVCTVYL 484 (537)
Q Consensus 469 ~~~~~~~~~~~~~~~~ 484 (537)
.|.+.++..+++.+..
T Consensus 170 ~F~iaaigm~l~li~~ 185 (493)
T PRK15462 170 GFGLAAVGMIAGLVIF 185 (493)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888766555544443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-10 Score=117.59 Aligned_cols=154 Identities=13% Similarity=0.022 Sum_probs=114.5
Q ss_pred hhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHh--hH-H-HHH
Q psy4866 86 APVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR--SV-L-GLY 161 (537)
Q Consensus 86 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~--~~-~-~l~ 161 (537)
....|.+.+ +.|.+....++......++..++.++.|+++||+|||++++.+.++.+++.++.+... +. + ...
T Consensus 291 ~~~~p~i~~---~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~ 367 (479)
T PRK10077 291 LYYAPEIFK---TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL 367 (479)
T ss_pred HHHHHHHHH---HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHH
Confidence 344577777 7888887778888888889999999999999999999999999999988887766432 21 1 222
Q ss_pred HHHHHHHhHhhhh-hhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhh----------hhhHHHHHHHHHHHHH
Q psy4866 162 VMRTLQGFSMAAI-YVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGS----------ELSYMNYLTYSLIIPI 230 (537)
Q Consensus 162 ~~r~l~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~----------~~~wr~~~~~~~~~~~ 230 (537)
.+-++.+++.+.. .+....++.|.+|+++|+.++++......+|.++++.+.. .++|++.|++.+++++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (479)
T PRK10077 368 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV 447 (479)
T ss_pred HHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHH
Confidence 3344444444432 3667899999999999999999999988888887754433 3467888888887766
Q ss_pred HHHHH-hhcccCC
Q psy4866 231 IFTVT-FMFMPES 242 (537)
Q Consensus 231 ~~~~~-~~~~~es 242 (537)
+..+. +++.||+
T Consensus 448 ~~~~~~~~~~~e~ 460 (479)
T PRK10077 448 LAALFMWKFVPET 460 (479)
T ss_pred HHHHHHHhccccC
Confidence 65544 4456776
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.1e-11 Score=118.03 Aligned_cols=152 Identities=11% Similarity=0.015 Sum_probs=109.4
Q ss_pred chhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHH--HHHhhHHHHHH
Q psy4866 85 SAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIA--MYSRSVLGLYV 162 (537)
Q Consensus 85 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~--~~~~~~~~l~~ 162 (537)
....+|.+.++ ++|+|..+.++..+.+.++..++.+++|+++||+|||+.+.....+..++..+. ...++.+.+.+
T Consensus 277 ~~~~~p~yl~~--~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (467)
T PRK09556 277 IDNWSPVYAFQ--ELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLA 354 (467)
T ss_pred HHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 34445654431 789999999999999999999999999999999999987766554444433222 23346666778
Q ss_pred HHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHH-HHHHHHHHhhh----------------hhHHHHHHHH
Q psy4866 163 MRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHL-GILYTYVLGSE----------------LSYMNYLTYS 225 (537)
Q Consensus 163 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~i~~~l~~~----------------~~wr~~~~~~ 225 (537)
.+++.|++.............|.+|+++||.+.++.+....+ |..++|.+.+. .+|+..|++.
T Consensus 355 ~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~ 434 (467)
T PRK09556 355 SLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAAL 434 (467)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHH
Confidence 888888654444333445677999999999999999888776 65666555433 2489999888
Q ss_pred HHHHHHHHHHhhc
Q psy4866 226 LIIPIIFTVTFMF 238 (537)
Q Consensus 226 ~~~~~~~~~~~~~ 238 (537)
++..++..+..++
T Consensus 435 ~~~~~~~~~~~~~ 447 (467)
T PRK09556 435 DIAAIGCICLMAI 447 (467)
T ss_pred HHHHHHHHHHHHH
Confidence 7776665554443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-10 Score=114.52 Aligned_cols=163 Identities=12% Similarity=0.104 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccC
Q psy4866 317 VQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYE 395 (537)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (537)
.......+|.+.++.+.+. ..++......++..++.++.|++.||+|||+.+..+..+.+++.++..+.
T Consensus 19 ~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~---------- 88 (382)
T PRK10091 19 EFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS---------- 88 (382)
T ss_pred HHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh----------
Confidence 3455556777777777653 44577788899999999999999999999999999998888887766552
Q ss_pred CcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhH
Q psy4866 396 IPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGV 475 (537)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 475 (537)
++.+..++.-++.+.+.+... +....+..|.+|+++|+.++++......++..++|.+.+.+.+..||++.|.+.++
T Consensus 89 --~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~ 165 (382)
T PRK10091 89 --SSYLMLAIGRLVSGFPHGAFF-GVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAV 165 (382)
T ss_pred --CcHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHH
Confidence 334444555555555544433 34446778889998999999999999999999999999999998899999998888
Q ss_pred HHHHHHHHHHhhccCCC
Q psy4866 476 SSLVCTVYLYYFLLETK 492 (537)
Q Consensus 476 ~~~~~~~~~~~~~~~~~ 492 (537)
+.++..+..+...|+.+
T Consensus 166 ~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 166 FNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 77766665555566643
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-10 Score=117.27 Aligned_cols=170 Identities=14% Similarity=0.057 Sum_probs=126.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHH
Q psy4866 308 LAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYY 386 (537)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (537)
+..+........+..+.|.+.++.+.+. +.++......++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 17 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~- 95 (471)
T PRK10504 17 FGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS- 95 (471)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh-
Confidence 3334444445566778899988877763 33456666778888999999999999999999988877777766554431
Q ss_pred HhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy4866 387 YVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGM 466 (537)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 466 (537)
.+.+..++..++.+.+.+.. .+...+++.|.+|+++|+++.|+.+...++|..++|.+.|.+.+..||
T Consensus 96 -----------~~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw 163 (471)
T PRK10504 96 -----------GTLNELLLARVLQGVGGAMM-VPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASW 163 (471)
T ss_pred -----------CCHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccH
Confidence 23334444555555555443 445567889999999999999999999999999999999999999999
Q ss_pred chhhhHhhHHHHHHHHHHHhhccC
Q psy4866 467 YSNFLFGGVSSLVCTVYLYYFLLE 490 (537)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~ 490 (537)
++.|.+...+..++.+......++
T Consensus 164 ~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 164 HWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999988877777666665555444
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.7e-11 Score=117.57 Aligned_cols=162 Identities=13% Similarity=0.144 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcc
Q psy4866 320 IIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPY 398 (537)
Q Consensus 320 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (537)
+....|.+.+ .+.+. +.++......++..++.++.|+++||+|||+.+..+.++.+++.+++...... ..
T Consensus 46 ~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 116 (438)
T TIGR00712 46 FALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA--------TS 116 (438)
T ss_pred HHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc--------cc
Confidence 3444555544 45553 34577778889999999999999999999999888887777776665432100 01
Q ss_pred cchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH-hhccchhhhHhhHHH
Q psy4866 399 TSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK-HIGMYSNFLFGGVSS 477 (537)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~~~ 477 (537)
+.+...+..++.+.+.+..+. .....+.|.+|+++|++++|+.+....+++.+++.+.+...+ ..||+..|++.++++
T Consensus 117 ~~~~l~~~~~l~g~~~g~~~~-~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~ 195 (438)
T TIGR00712 117 SIAIMFVLLFLNGWFQGMGWP-PCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICA 195 (438)
T ss_pred hHHHHHHHHHHHHHHhhcchH-HHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 122223333444555444443 344777899999999999999999999999999888776554 468999898888887
Q ss_pred HHHHHHHHhhccCC
Q psy4866 478 LVCTVYLYYFLLET 491 (537)
Q Consensus 478 ~~~~~~~~~~~~~~ 491 (537)
++..++.+++.+|+
T Consensus 196 ~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 196 IIVALFAFAMMRDT 209 (438)
T ss_pred HHHHHHHHHhccCC
Confidence 77766666666554
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.7e-11 Score=114.08 Aligned_cols=160 Identities=8% Similarity=0.055 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccC
Q psy4866 317 VQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYE 395 (537)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (537)
.......+|.+..+.+.+. ..+.......++.+++.++.|+++||+|||+.+..+.++..++.+++.......
T Consensus 15 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~------ 88 (365)
T TIGR00900 15 TAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLG------ 88 (365)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcC------
Confidence 3344455566666655542 345677778889999999999999999999999988887777766655532111
Q ss_pred CcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhH
Q psy4866 396 IPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGV 475 (537)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 475 (537)
..+.+..++...+.+.+.+.. .+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..+++.++
T Consensus 89 -~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~ 166 (365)
T TIGR00900 89 -GLNIWQVYVLAGILAIAQAFF-TPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAV 166 (365)
T ss_pred -CCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 013344445555555555443 455568999999999999999999999999999999999999999999988887766
Q ss_pred HHHHHHHHH
Q psy4866 476 SSLVCTVYL 484 (537)
Q Consensus 476 ~~~~~~~~~ 484 (537)
..+++.++.
T Consensus 167 ~~~~~~~~~ 175 (365)
T TIGR00900 167 GFAISALLI 175 (365)
T ss_pred HHHHHHHHH
Confidence 666555444
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-10 Score=113.39 Aligned_cols=155 Identities=13% Similarity=0.007 Sum_probs=115.7
Q ss_pred HHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhh
Q psy4866 325 NTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVP 403 (537)
Q Consensus 325 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (537)
|.+.++.+.+. .......++.++..++.++.|+++||+|||+.+..+..+..++.++.... .+.+..
T Consensus 40 ~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a------------~~~~~l 107 (413)
T PRK15403 40 INVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT------------TSMTQF 107 (413)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc------------CCHHHH
Confidence 44445555542 33466677788899999999999999999999999888877777666542 233344
Q ss_pred HHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhHHHHHHHHH
Q psy4866 404 FLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVY 483 (537)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 483 (537)
++.-++.+.+.+. ..+....+..|.+|++++++++++.+....++..++|.+.+.+.+..||++.|++.+++.++..+.
T Consensus 108 ~~~r~l~Gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~ 186 (413)
T PRK15403 108 LIARFIQGTSICF-IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVG 186 (413)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 4444555554432 234455778899999999999999999999999999999999998889999999888887777666
Q ss_pred HHhhccCCC
Q psy4866 484 LYYFLLETK 492 (537)
Q Consensus 484 ~~~~~~~~~ 492 (537)
.++..||++
T Consensus 187 ~~~~lp~~~ 195 (413)
T PRK15403 187 LLLAMPETV 195 (413)
T ss_pred HHHhCCCCc
Confidence 555667654
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.1e-10 Score=113.26 Aligned_cols=159 Identities=11% Similarity=-0.029 Sum_probs=110.8
Q ss_pred hHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhcccc
Q psy4866 316 GVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQY 394 (537)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (537)
.......+.|.+.++.+.+. +.+.......++..++.++.|+++||+|||+.+..+.++.+++.++..+.
T Consensus 51 ~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--------- 121 (476)
T PLN00028 51 STFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV--------- 121 (476)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh---------
Confidence 34455566677777777753 33355666778888999999999999999999988887777776655542
Q ss_pred CCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH---------hhc
Q psy4866 395 EIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK---------HIG 465 (537)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~---------~~g 465 (537)
.+.+..++..++.+.+.+. ..+ ...++.|.+|+++||+++|+.+...++|..+++.+.+.+.. ..|
T Consensus 122 ---~s~~~l~~~r~l~G~~~~~-~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~g 196 (476)
T PLN00028 122 ---SSATGFIAVRFFIGFSLAT-FVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTA 196 (476)
T ss_pred ---cCHHHHHHHHHHHHHHHHh-hHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhh
Confidence 2233333333444444432 333 33567899999999999999998888888887776655432 147
Q ss_pred cchhhhHhhHHHHHHHHHHHhhc
Q psy4866 466 MYSNFLFGGVSSLVCTVYLYYFL 488 (537)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~ 488 (537)
|++.|.+.+++.++..++.+++.
T Consensus 197 Wr~~f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 197 WRIAFFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999988888877666654443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.8e-10 Score=111.29 Aligned_cols=149 Identities=11% Similarity=0.119 Sum_probs=114.5
Q ss_pred hhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHH-HHHHHHHHHHHHHHH-----HhhHHH
Q psy4866 86 APVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLL-MTGPITTASWIIAMY-----SRSVLG 159 (537)
Q Consensus 86 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~-~~~~l~~~~~~~~~~-----~~~~~~ 159 (537)
....|.+.+ ++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+...+ .++++.
T Consensus 242 ~~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~ 318 (402)
T TIGR00897 242 AVFLPMFVA---ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAV 318 (402)
T ss_pred HHHHHHHHH---HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHH
Confidence 445677777 88999999999999999999999999999999999888764 333334443333332 235677
Q ss_pred HHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHH
Q psy4866 160 LYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVT 235 (537)
Q Consensus 160 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~~~~~~~~ 235 (537)
+++..++.|++.+...+. ...+.|..| ++|+++.++.+....+|..++|.+++. .||+..+++.+++.++..+.
T Consensus 319 ~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~ 396 (402)
T TIGR00897 319 ALIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFL 396 (402)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 778889999988876553 456677654 589999999999999999999988765 48899999988887776665
Q ss_pred hhcc
Q psy4866 236 FMFM 239 (537)
Q Consensus 236 ~~~~ 239 (537)
.+++
T Consensus 397 ~~~~ 400 (402)
T TIGR00897 397 TAFI 400 (402)
T ss_pred HHHh
Confidence 5554
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-10 Score=114.14 Aligned_cols=155 Identities=13% Similarity=0.061 Sum_probs=127.1
Q ss_pred hhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy4866 86 APVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRT 165 (537)
Q Consensus 86 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~ 165 (537)
...+|.+.++ .+|.+..+.|++.+.+.++..++.++.|++.||.++++.+..+.++.+++.++..+.++.+.+.++.+
T Consensus 243 ~~~~p~~~~~--~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (417)
T PRK10489 243 RVLYPALADE--VWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLA 320 (417)
T ss_pred HHhhHHHHHh--ccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 3445666661 38999999999999999999999999999999988888888888888888888888888888888999
Q ss_pred HHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHH-HHHHhhccc
Q psy4866 166 LQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPII-FTVTFMFMP 240 (537)
Q Consensus 166 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~~~~-~~~~~~~~~ 240 (537)
+.|++.+...+...+++.|..|++.|+++++++.....+|..+++.+.+. ++++..+++.+...++ ..+....+|
T Consensus 321 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 400 (417)
T PRK10489 321 LFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLG 400 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 99999888888888899999999999999999988888888888877765 3667777766665544 445555566
Q ss_pred CC
Q psy4866 241 ES 242 (537)
Q Consensus 241 es 242 (537)
|.
T Consensus 401 ~~ 402 (417)
T PRK10489 401 EL 402 (417)
T ss_pred cc
Confidence 54
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=113.11 Aligned_cols=161 Identities=17% Similarity=0.199 Sum_probs=121.2
Q ss_pred HHHHHHHHH-HHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhcccc
Q psy4866 317 VQSIIAYAN-TIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQY 394 (537)
Q Consensus 317 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (537)
........| .+.++.+.+. +.++......++..++.++.|+++||+|||+.+..+.++.+++.++..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--------- 82 (352)
T PF07690_consen 12 FSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA--------- 82 (352)
T ss_dssp HHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh---------
Confidence 444555556 4545556553 45577788889999999999999999999999999988888884444431
Q ss_pred CCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhh
Q psy4866 395 EIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGG 474 (537)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 474 (537)
.+.+..++..++.+.+.+. ..+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..||+..+++.+
T Consensus 83 ---~~~~~~~~~~~l~g~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~ 158 (352)
T PF07690_consen 83 ---SNFWLLLIARFLLGIGSGF-FSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISA 158 (352)
T ss_dssp ---CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHH
T ss_pred ---hhHHHHhhhcccccccccc-ccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccccccc
Confidence 2334455555556666544 445566899999999999999999999999999999999999998889999999998
Q ss_pred HHHHHHHHHHHhhccC
Q psy4866 475 VSSLVCTVYLYYFLLE 490 (537)
Q Consensus 475 ~~~~~~~~~~~~~~~~ 490 (537)
++.++..++...+.++
T Consensus 159 ~~~~~~~il~~~~~~~ 174 (352)
T PF07690_consen 159 ILSLIAAILFILFLPE 174 (352)
T ss_dssp HHHHHHHHHHHCCC--
T ss_pred chhhhhhhhHhhhhhh
Confidence 8888887754444433
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.5e-10 Score=112.67 Aligned_cols=145 Identities=15% Similarity=0.106 Sum_probs=108.0
Q ss_pred CCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHhHhhh
Q psy4866 98 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS----RSVLGLYVMRTLQGFSMAA 173 (537)
Q Consensus 98 ~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~ 173 (537)
++|.+......+.....+...++.+++|+++||+|||++++.+.++..++.+..... ++.+.+++..++.|++.+.
T Consensus 280 ~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 359 (438)
T PRK09952 280 NLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDM 359 (438)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Confidence 678887766666666677778888999999999999999988877665554433221 2344455566777888888
Q ss_pred hhhhhhhhhhccCCCcccchhhhHh-HHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHHHHHhhcccCC
Q psy4866 174 IYVISPMYLGEISETSIRGTIGTLF-QISCHLGILYTYVLGSEL------SYMNYLTYSLIIPIIFTVTFMFMPES 242 (537)
Q Consensus 174 ~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~i~~~l~~~~------~wr~~~~~~~~~~~~~~~~~~~~~es 242 (537)
..+...+++.|.+|.+.|+...++. ..+..+|..++|.+.+.+ +|+..+.+.++..++..+..+.++|+
T Consensus 360 ~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 360 VVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 8888899999999999998888884 444557888888777653 37888888777777766666666654
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.9e-10 Score=112.48 Aligned_cols=163 Identities=13% Similarity=-0.033 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccC
Q psy4866 317 VQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYE 395 (537)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (537)
...+...+|.+.++.+.+. ..+.......++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---------- 98 (406)
T PRK15402 29 NDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA---------- 98 (406)
T ss_pred hhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH----------
Confidence 3344444566666666653 33456677888889999999999999999999998888777776665442
Q ss_pred CcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhH
Q psy4866 396 IPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGV 475 (537)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 475 (537)
.+.+..++..++.+.+.+. ..+.....+.|.+|++.|+++.++......++..++|.+.+.+.+..+|+..+++.++
T Consensus 99 --~~~~~l~~~~~l~G~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~ 175 (406)
T PRK15402 99 --QSIEQFTLLRFLQGIGLCF-IGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAA 175 (406)
T ss_pred --ccHHHHHHHHHHHHhHhhh-HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHH
Confidence 2233333444444444333 2344567888999999999999999888889999999999999998899999988888
Q ss_pred HHHHHHHHHHhhccCCC
Q psy4866 476 SSLVCTVYLYYFLLETK 492 (537)
Q Consensus 476 ~~~~~~~~~~~~~~~~~ 492 (537)
+.+++.+..+...|+++
T Consensus 176 ~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 176 LAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 87777665555566554
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.7e-10 Score=109.28 Aligned_cols=142 Identities=12% Similarity=0.053 Sum_probs=116.0
Q ss_pred hhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy4866 87 PVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTL 166 (537)
Q Consensus 87 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l 166 (537)
...|.+.+ +.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+.++.++.+++.++.+++++++.+++..++
T Consensus 226 ~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 302 (382)
T PRK11128 226 GFSAIYWQ---AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQIL 302 (382)
T ss_pred HHHHHHHH---HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34455666 789999999999999999999999999999999999999999999999988888889999999999999
Q ss_pred HHhHhhhhhhhhhhhhhccCCCcccchhhhHhH-HHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHH
Q psy4866 167 QGFSMAAIYVISPMYLGEISETSIRGTIGTLFQ-ISCHLGILYTYVLGSEL----SYMNYLTYSLIIPIIFT 233 (537)
Q Consensus 167 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~l~~~~----~wr~~~~~~~~~~~~~~ 233 (537)
.|++.+...+....++.+. ++++++++.++.. ....+|..+++.+++.+ ++ ..|+..+++.++.+
T Consensus 303 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~ 372 (382)
T PRK11128 303 HCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence 9999999989999988887 5666788888875 55567777777777664 55 45555555555443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.4e-10 Score=110.69 Aligned_cols=161 Identities=14% Similarity=0.078 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCc
Q psy4866 319 SIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIP 397 (537)
Q Consensus 319 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (537)
......|.+.++.+.+. ..+.......++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 26 ~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------------ 93 (394)
T PRK11652 26 IYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA------------ 93 (394)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH------------
Confidence 33444577777777653 34467777888999999999999999999999998888777776655442
Q ss_pred ccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhHHH
Q psy4866 398 YTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSS 477 (537)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 477 (537)
.+.+..++..++.+.+.+. ..+....+..|.++.+.++.+.+..+....++..++|.+.+.+.+..||+..|.+.++..
T Consensus 94 ~~~~~l~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~ 172 (394)
T PRK11652 94 HSLTVLIAASAIQGLGTGV-GGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLG 172 (394)
T ss_pred ccHHHHHHHHHHHHhhhhH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 2233334444444444333 234444677788888889999999999999999999999999999889998888877766
Q ss_pred HHHHHHHHhhccCCC
Q psy4866 478 LVCTVYLYYFLLETK 492 (537)
Q Consensus 478 ~~~~~~~~~~~~~~~ 492 (537)
++..++...+.||++
T Consensus 173 ~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 173 AGVTFSMARWMPETR 187 (394)
T ss_pred HHHHHHHHHhCCccC
Confidence 665555555566643
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.5e-10 Score=112.63 Aligned_cols=160 Identities=10% Similarity=0.070 Sum_probs=119.0
Q ss_pred HHHhhhHHHHHHHHHHHHHhc---CCCC-ChhHHHHHHHHHHHHHhhhHhhhhcc-cCCcHHHHHhhHHHHHHHHHHHHH
Q psy4866 311 FRAFTGVQSIIAYANTIFASS---ETFL-PSDYISILFAIILLVSIFPSTYYIDR-AGRRVLFLVSSAGCSLFSFIAGLY 385 (537)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~ 385 (537)
+..-.+++.+..++|.|+.+. +.+. +++.......++..++.+++|+++|| +|||+.+..+.++.+++.+++.+.
T Consensus 20 ~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~ 99 (475)
T TIGR00924 20 LWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS 99 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc
Confidence 333344667788888888763 4442 45577777888999999999999999 899999999999988888776652
Q ss_pred HHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccc---cchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4866 386 YYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNM---KAVSCAVINILCTTLGLISYKLFFLMDK 462 (537)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 462 (537)
.+.+...+...+.+.+.+. ..+...++..+.+|++. |+++.++.+...++|.+++|.+.+++.+
T Consensus 100 ------------~~~~~~~~~~~l~g~g~g~-~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~ 166 (475)
T TIGR00924 100 ------------IYPDLIFYGLGTIAVGSGL-FKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE 166 (475)
T ss_pred ------------ccHhHHHHHHHHHHhcccc-ccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333344444444433 34455578888888754 8889999999999999999999999999
Q ss_pred hhccchhhhHhhHHHHHHHHH
Q psy4866 463 HIGMYSNFLFGGVSSLVCTVY 483 (537)
Q Consensus 463 ~~g~~~~~~~~~~~~~~~~~~ 483 (537)
+.||+..|.+.++.++++.+.
T Consensus 167 ~~g~~~~f~~~~~~~~~~~l~ 187 (475)
T TIGR00924 167 NYGYHVGFNLAAVGMVIGLLT 187 (475)
T ss_pred hcChHHHHHHHHHHHHHHHHH
Confidence 889998888877655555443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.7e-10 Score=109.76 Aligned_cols=171 Identities=12% Similarity=0.055 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHH
Q psy4866 300 KAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLF 378 (537)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 378 (537)
++..+...+.++............+|.+.++.+.+. +.+.......++..++.++.|++.||+|||+.+..+.++..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~ 85 (394)
T PRK03699 6 IKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILA 85 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 334444444444433334556666788777777653 3446677788899999999999999999999999888887777
Q ss_pred HHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHH
Q psy4866 379 SFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFF 458 (537)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g 458 (537)
.++..+. ++.+..++..++.+.+.+... +....++.|.+|+++|+.+.+..+....+++.++|.+.+
T Consensus 86 ~~l~~~~------------~~~~~~~~~~~l~G~~~g~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 152 (394)
T PRK03699 86 VAGLMFS------------HSLALFSIAMFVLGVVSGITM-SIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAA 152 (394)
T ss_pred HHHHHHc------------chHHHHHHHHHHHHHhhHhhc-cchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666552 233344444455555555444 344578899999999999999998888999999999988
Q ss_pred HHHH-hhccchhhhHhhHHHHHHHHH
Q psy4866 459 LMDK-HIGMYSNFLFGGVSSLVCTVY 483 (537)
Q Consensus 459 ~l~~-~~g~~~~~~~~~~~~~~~~~~ 483 (537)
.+.+ ..||+..|.+.+++.++..++
T Consensus 153 ~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 153 YLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHH
Confidence 8765 468998888877766655444
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-10 Score=113.43 Aligned_cols=157 Identities=15% Similarity=0.026 Sum_probs=115.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHH
Q psy4866 305 MAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAG 383 (537)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 383 (537)
...+..+.............|.+.++.+.+. +.+.......++..++.++.|+++||+|||+.+..+.++.+++.++..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~ 101 (426)
T PRK12307 22 SAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSG 101 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 3333333333334455556666666666653 345677778899999999999999999999999999998888877766
Q ss_pred HHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4866 384 LYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKH 463 (537)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 463 (537)
+. ++.+..++.-++.+.+.+.. .+....++.|.+|+++|+++.++......+|.++++.+.+.+.+.
T Consensus 102 ~~------------~~~~~l~~~r~l~G~g~g~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~ 168 (426)
T PRK12307 102 LA------------SGVIMLTLSRFIVGMGMAGE-YACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA 168 (426)
T ss_pred HH------------hHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc
Confidence 53 23344444455555554433 344558889999999999999999999999999999999988888
Q ss_pred hccchhhhHhh
Q psy4866 464 IGMYSNFLFGG 474 (537)
Q Consensus 464 ~g~~~~~~~~~ 474 (537)
.||+..|++..
T Consensus 169 ~~w~~~f~i~~ 179 (426)
T PRK12307 169 YGWRAAFFVGL 179 (426)
T ss_pred CCHHHHHHHHH
Confidence 89998887643
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-10 Score=116.02 Aligned_cols=158 Identities=14% Similarity=0.087 Sum_probs=119.2
Q ss_pred hccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH-----h-
Q psy4866 82 FAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS-----R- 155 (537)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~-----~- 155 (537)
........|.+.+ ++|.+..+.++......++..++.+++|+++||+|||+.+.++.++.+++.++.++. +
T Consensus 300 ~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (481)
T TIGR00879 300 INAIMYYSPTIFE---NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTG 376 (481)
T ss_pred CeehHHHHHHHHH---HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 3344555677777 789998888999999999999999999999999999999999988888777766521 1
Q ss_pred -----hHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHH
Q psy4866 156 -----SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSL 226 (537)
Q Consensus 156 -----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~ 226 (537)
+...+....++.+.......+....++.|.+|+++|++++++......+|.++++.+.+. .+|++.|++.+
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~ 456 (481)
T TIGR00879 377 SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFG 456 (481)
T ss_pred cccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHH
Confidence 222333333333333233346667778999999999999999999999999999887765 37899998888
Q ss_pred HHHHHHHHHh-hcccCC
Q psy4866 227 IIPIIFTVTF-MFMPES 242 (537)
Q Consensus 227 ~~~~~~~~~~-~~~~es 242 (537)
+++++..+.. ++.||+
T Consensus 457 ~~~~~~~i~~~~~~~~~ 473 (481)
T TIGR00879 457 GLNVLGLIFVYFFLPET 473 (481)
T ss_pred HHHHHHHHHHheecccC
Confidence 8877655544 456665
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=6e-10 Score=109.60 Aligned_cols=160 Identities=13% Similarity=0.034 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHH-hcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhcccc
Q psy4866 317 VQSIIAYANTIFA-SSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQY 394 (537)
Q Consensus 317 ~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (537)
.+....+++.+++ +.+.+. ..+.......+...+..++.|+++||+|||+.+..+..+..++.+.+...
T Consensus 26 ~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~--------- 96 (400)
T PRK11646 26 FFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA--------- 96 (400)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh---------
Confidence 4455556666654 445542 33455566677777888999999999999999999999888887776552
Q ss_pred CCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhh
Q psy4866 395 EIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGG 474 (537)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 474 (537)
++.+...+...+.+.+.+. ..+...+++.+.+|+++|+++.|+.+...++|..++|.+.+.+. ..||+..|++.+
T Consensus 97 ---~~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~ 171 (400)
T PRK11646 97 ---HEPWLLWLSCILSGLGGTL-FDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGA 171 (400)
T ss_pred ---ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 2334444444455554433 33445578899999999999999999999999999999999998 679998888877
Q ss_pred HHHHHHHHHHHhhccC
Q psy4866 475 VSSLVCTVYLYYFLLE 490 (537)
Q Consensus 475 ~~~~~~~~~~~~~~~~ 490 (537)
+++++..++...+.++
T Consensus 172 ~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 172 VLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHHHHhCCc
Confidence 7776665554455554
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.6e-10 Score=111.70 Aligned_cols=160 Identities=12% Similarity=0.081 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCc
Q psy4866 319 SIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIP 397 (537)
Q Consensus 319 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (537)
.....+|.+.++.+.+. +.+.......++..++.++.|++.||+|||+.+..+.++..++.+.+...
T Consensus 9 ~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~------------ 76 (377)
T PRK11102 9 MYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA------------ 76 (377)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH------------
Confidence 34455677777766653 44567777888999999999999999999999999988888887776553
Q ss_pred ccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhHHH
Q psy4866 398 YTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSS 477 (537)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 477 (537)
.+.+...+..++.+.+.+.. .+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..+.+.+++.
T Consensus 77 ~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 155 (377)
T PRK11102 77 QTIDQLIYMRFLHGLAAAAA-SVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAA 155 (377)
T ss_pred ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 23334444445555554433 34455888999999999999999999999999999999999999889998888888777
Q ss_pred HHHHHHHHhhccCC
Q psy4866 478 LVCTVYLYYFLLET 491 (537)
Q Consensus 478 ~~~~~~~~~~~~~~ 491 (537)
++..++...+.+|+
T Consensus 156 ~~~~~~~~~~~~~~ 169 (377)
T PRK11102 156 ILAAALVFFFIPET 169 (377)
T ss_pred HHHHHHHHHhCCcc
Confidence 77766665566654
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-09 Score=108.13 Aligned_cols=151 Identities=15% Similarity=-0.011 Sum_probs=109.9
Q ss_pred HHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccch
Q psy4866 323 YANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSW 401 (537)
Q Consensus 323 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (537)
..|.+.++.+.+. +.+....+..++..++.++.|+++||+|||+.+..+..+..++.+...+. .+.+
T Consensus 28 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------~~~~ 95 (401)
T PRK11043 28 AFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV------------ESAA 95 (401)
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh------------cCHH
Confidence 3344555656552 44567777888899999999999999999999998888777766665542 2233
Q ss_pred hhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhHHHHHHH
Q psy4866 402 VPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCT 481 (537)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 481 (537)
..++..++.+.+.+.. .+....+..|.+|+++++...+..+....++..++|.+.+.+.+..||+..+.+.+++.++..
T Consensus 96 ~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~ 174 (401)
T PRK11043 96 QLLVLRFVQAVGVCSA-AVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLI 174 (401)
T ss_pred HHHHHHHHHHhhhHHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 3333344444443332 233446788999999888999999988999999999999999999999988888877777665
Q ss_pred HHHHh
Q psy4866 482 VYLYY 486 (537)
Q Consensus 482 ~~~~~ 486 (537)
++.+.
T Consensus 175 ~~~~~ 179 (401)
T PRK11043 175 LPTLR 179 (401)
T ss_pred HHHHH
Confidence 55433
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.5e-10 Score=108.59 Aligned_cols=162 Identities=9% Similarity=-0.020 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccC
Q psy4866 317 VQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYE 395 (537)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (537)
...+...+|.+.++.+.+. +.++....+.++..++.+..|+++||+|||+++.........+.. ....
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~---------- 75 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLD---------- 75 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHH----------
Confidence 3445556677777777653 344677778888999999999999999988876544433333221 1111
Q ss_pred CcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhH
Q psy4866 396 IPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGV 475 (537)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 475 (537)
..+.+..++.-++.+.+.+. . ........|.+|+++|++++++.+....+|..+++.+.+.+.+..||+..|.+.++
T Consensus 76 -~~~~~~l~~~R~l~G~g~~~-~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~ 152 (368)
T TIGR00903 76 -PFNYEWLLACQLLAALGQPF-L-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAA 152 (368)
T ss_pred -hccHHHHHHHHHHHHhHhHH-H-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 01233444444555555443 2 23345568999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHhhccCCC
Q psy4866 476 SSLVCTVYLYYFLLETK 492 (537)
Q Consensus 476 ~~~~~~~~~~~~~~~~~ 492 (537)
+.++..++.++++||.+
T Consensus 153 l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 153 VAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 88887777777777754
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-08 Score=97.62 Aligned_cols=103 Identities=21% Similarity=0.184 Sum_probs=90.5
Q ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCc
Q psy4866 110 VAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETS 189 (537)
Q Consensus 110 ~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 189 (537)
.++-+..+.+++++.+.+.|+.|.|..+.++...+....+..-+ .|-+.+++.-.+.|+|.+..+..--.+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 77788888999999999999999999999999999888777655 45677788999999999999999999999999999
Q ss_pred ccchhhhHhHHHHHHHHHHHHHHh
Q psy4866 190 IRGTIGTLFQISCHLGILYTYVLG 213 (537)
Q Consensus 190 ~r~~~~~~~~~~~~~G~~i~~~l~ 213 (537)
.+.+..++.-.....+.++|..+-
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhh
Confidence 999999998888888887776554
|
|
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.4e-10 Score=108.87 Aligned_cols=156 Identities=12% Similarity=0.076 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccC
Q psy4866 317 VQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYE 395 (537)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (537)
...+.+++--.+++.+... --+.....--.+.++.-++.+++.+|+|+-+++..++.+..+-++.+...
T Consensus 387 ~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L---------- 456 (618)
T KOG3762|consen 387 VGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL---------- 456 (618)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh----------
Confidence 3444455544555554321 11233444456677888889999999999999999988888877776654
Q ss_pred CcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHH-HHHHHHHHHHHHHHHHHhhccchhhhHhh
Q psy4866 396 IPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINIL-CTTLGLISYKLFFLMDKHIGMYSNFLFGG 474 (537)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 474 (537)
.++|..+..-++-+...+..+..+. +|++...|++.++++.++.... ..+|-.+|.++.|.+.+.+|.+..|.+++
T Consensus 457 --~n~W~vLPieilqgit~aliWaa~~-sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~g 533 (618)
T KOG3762|consen 457 --QNPWMVLPIEILQGITHALIWAAII-SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFG 533 (618)
T ss_pred --cCchheeeHHHHHHHHHHHHHHHHH-HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHH
Confidence 4677777777788888888777665 9999999999999999998765 47888899999999999999998898888
Q ss_pred HHHHHHHHHHH
Q psy4866 475 VSSLVCTVYLY 485 (537)
Q Consensus 475 ~~~~~~~~~~~ 485 (537)
+.+++.+++..
T Consensus 534 iAcl~~l~~~~ 544 (618)
T KOG3762|consen 534 IACLVTLALFI 544 (618)
T ss_pred HHHHHHHHHHH
Confidence 88877666543
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.7e-10 Score=108.60 Aligned_cols=137 Identities=21% Similarity=0.321 Sum_probs=113.7
Q ss_pred CCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhh
Q psy4866 99 IPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVIS 178 (537)
Q Consensus 99 ~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 178 (537)
.+.+....|.+.++..+...++.+..|++.||+|||+.+.++.++.+++.++..+++|.+.+++.++++|++........
T Consensus 249 ~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 328 (396)
T TIGR00882 249 PQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGC 328 (396)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 35566678999999999999999999999999999999999999998888887888899999999999999987777777
Q ss_pred hhhhhccCCCcccchhhhH-hHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHH
Q psy4866 179 PMYLGEISETSIRGTIGTL-FQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVT 235 (537)
Q Consensus 179 ~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~~~~~~~~ 235 (537)
..++.+..+++.++...+. ++....+|.++++.+++. +||+..|.+.+++.++..+.
T Consensus 329 ~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 329 FKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 7788888888877776665 567778888888777655 48899999988887665443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.4e-10 Score=110.85 Aligned_cols=149 Identities=11% Similarity=0.072 Sum_probs=127.3
Q ss_pred chhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy4866 85 SAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMR 164 (537)
Q Consensus 85 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r 164 (537)
...++|.+.++ .+|.+....|++.+++.+|..+|.++.+++.+|+++++.+..+.++++++.+..+++++.+..++.-
T Consensus 237 ~~aLlPl~a~~--~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l 314 (524)
T PF05977_consen 237 VWALLPLFARD--VLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIAL 314 (524)
T ss_pred HHHhhhHHHHH--HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 34557777653 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHH
Q psy4866 165 TLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVT 235 (537)
Q Consensus 165 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~~~~~~~~ 235 (537)
++.|++.........+.+.+..|++.||++++++.+....+..+|.++.+. +|-+..+.+.++..++..++
T Consensus 315 ~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 315 FLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 999999999988999999999999999999999887777777666666554 57778887777655444433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.4e-10 Score=109.21 Aligned_cols=154 Identities=12% Similarity=0.137 Sum_probs=117.4
Q ss_pred chhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHH
Q psy4866 85 SAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR-SVLGLYVM 163 (537)
Q Consensus 85 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~-~~~~l~~~ 163 (537)
....+|.+.+ ++|.+..+.+.+.+.+.++..++.++.|++.||+|||+.+.++..+..++.++....+ +...+ .
T Consensus 224 ~~~~lp~~l~---~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~ 298 (393)
T PRK09705 224 LIAWLPAFYI---EIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--W 298 (393)
T ss_pred HHHHHHHHHH---HcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--H
Confidence 3445667777 7799999999999999999999999999999999999999998888777766554333 22222 2
Q ss_pred HHHHHhHhhhhhhhhhhhhhccCC-CcccchhhhHhHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHHHHHH-HHh
Q psy4866 164 RTLQGFSMAAIYVISPMYLGEISE-TSIRGTIGTLFQISCHLGILYTYVLGSEL-----SYMNYLTYSLIIPIIFT-VTF 236 (537)
Q Consensus 164 r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~l~~~~-----~wr~~~~~~~~~~~~~~-~~~ 236 (537)
-++.|++.+...+.......+..+ +++|++..++.+....++..++|.+.+++ +|...|.+.++.+++.. +..
T Consensus 299 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (393)
T PRK09705 299 AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITL 378 (393)
T ss_pred HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence 346688888888877777777775 56789999999999999988888887664 36777887777766544 335
Q ss_pred hcccCCh
Q psy4866 237 MFMPESP 243 (537)
Q Consensus 237 ~~~~esp 243 (537)
.+.||++
T Consensus 379 ~~~~~~~ 385 (393)
T PRK09705 379 RFAPARF 385 (393)
T ss_pred Hhccccc
Confidence 5667764
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.2e-10 Score=113.31 Aligned_cols=158 Identities=13% Similarity=0.073 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHH
Q psy4866 303 VFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFI 381 (537)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 381 (537)
+....+..+.............|.+.++.+.+. +.+.......++..++.++.|++.||+|||+.+..+.++.+++.++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 101 (496)
T PRK03893 22 FSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLA 101 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 333334433333345555666677777776653 3446677778888999999999999999999999888888887776
Q ss_pred HHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4866 382 AGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMD 461 (537)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 461 (537)
+.+. .+.+..++..++.+.+.+.. .+....++.|.+|+++|+.+.++.+....+|..+++.+.+.+.
T Consensus 102 ~~~~------------~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 168 (496)
T PRK03893 102 CGFA------------PGYWTLFIARLVIGMGMAGE-YGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV 168 (496)
T ss_pred HHHH------------hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6653 23344444445555544433 3445588899999999999999999999999999999999999
Q ss_pred HhhccchhhhHh
Q psy4866 462 KHIGMYSNFLFG 473 (537)
Q Consensus 462 ~~~g~~~~~~~~ 473 (537)
+..||+..|.+.
T Consensus 169 ~~~~w~~~f~~~ 180 (496)
T PRK03893 169 PVWGWRALFFIG 180 (496)
T ss_pred ccCCHHHHHHHH
Confidence 988999877653
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.1e-11 Score=113.12 Aligned_cols=147 Identities=14% Similarity=0.227 Sum_probs=123.6
Q ss_pred ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHh
Q psy4866 336 PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFN 415 (537)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (537)
..+++...+.+...++++++|++.||++|++++.+|..+..++.+...+. ...|..++.=.+.+.+-+
T Consensus 69 ~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs------------~~Fwq~~l~R~~vGiGeA 136 (493)
T KOG1330|consen 69 ELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS------------NHFWQVLLCRGFVGIGEA 136 (493)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhccchh
Confidence 44578888999999999999999999999999999999998888877764 234555555555666654
Q ss_pred hccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhhHhhHHHHHHHHHHHhhccCCCCC
Q psy4866 416 LGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG-MYSNFLFGGVSSLVCTVYLYYFLLETKGK 494 (537)
Q Consensus 416 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (537)
.+.|+..++++|.+|.++|++++++.++...+|..+|-.+.+.+.+..+ |+++|...+++.++..++..++.+|..++
T Consensus 137 -s~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg 215 (493)
T KOG1330|consen 137 -SYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERG 215 (493)
T ss_pred -hhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccc
Confidence 4677888999999999999999999999999999999888888887777 88999999999999999988888877655
Q ss_pred C
Q psy4866 495 T 495 (537)
Q Consensus 495 ~ 495 (537)
.
T Consensus 216 a 216 (493)
T KOG1330|consen 216 A 216 (493)
T ss_pred c
Confidence 3
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-09 Score=96.95 Aligned_cols=171 Identities=17% Similarity=0.147 Sum_probs=127.9
Q ss_pred HHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHH
Q psy4866 65 SFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPIT 144 (537)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~ 144 (537)
|+.++.........|..+ .++..-|++++ .+|.|++|...+.++-.+|..+| ++.|.+.|++|++.++++|.+..
T Consensus 2 W~~l~a~~~v~~~~Gt~Y-~Fs~yS~~Lk~---~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~ 76 (250)
T PF06813_consen 2 WLSLVASIWVQLCSGTTY-TFSAYSPQLKS---RLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLG 76 (250)
T ss_pred hhhHHHHHHHHHhcCccc-chhhhhHHHHH---HhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHH
Confidence 445555555555555333 34555678888 99999999999999999999874 88999999999999999999999
Q ss_pred HHHHHHHHHH-------hhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh-
Q psy4866 145 TASWIIAMYS-------RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL- 216 (537)
Q Consensus 145 ~~~~~~~~~~-------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~- 216 (537)
.+|..+..++ .++|.+.+..++.|.+.+....++.....+.||+ +||.+.++.-...+++..+-..+...+
T Consensus 77 ~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f 155 (250)
T PF06813_consen 77 FVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFF 155 (250)
T ss_pred HHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence 9999887664 3678888888888888877777777777788974 799999999999999988766655443
Q ss_pred --h-HHHHHHHHHHHHHHHHHHhhcccC
Q psy4866 217 --S-YMNYLTYSLIIPIIFTVTFMFMPE 241 (537)
Q Consensus 217 --~-wr~~~~~~~~~~~~~~~~~~~~~e 241 (537)
+ -...+.+.....++.++..++++.
T Consensus 156 ~~~~~~fll~la~~~~~v~l~~~~~vr~ 183 (250)
T PF06813_consen 156 GDDPSSFLLFLAVLPAVVCLVAMFFVRP 183 (250)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhhheec
Confidence 2 233333333444445555555543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.1e-10 Score=113.48 Aligned_cols=142 Identities=8% Similarity=-0.019 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhc
Q psy4866 338 DYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLG 417 (537)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (537)
+.....+.++..++.++.|++.||+|+|+.+..+.++..++.++..+.. ....+..++.-++.+.+.+.
T Consensus 79 g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~~~G~~~~~- 147 (465)
T TIGR00894 79 GLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA----------GGGIALVVFCRVIQGLAQGS- 147 (465)
T ss_pred hHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH----------HcCchHHHHHHHHHHHhccc-
Confidence 3567778889999999999999999999999988887777766543321 11223334444455555444
Q ss_pred cccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh-hccchhhhHhhHHHHHHHHHHHhhccC
Q psy4866 418 FGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKH-IGMYSNFLFGGVSSLVCTVYLYYFLLE 490 (537)
Q Consensus 418 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (537)
..+....++.|.+|+++|++++|+.+....+|.++++.+.+.+.+. .||+..|++.+++.++..++.+.+.++
T Consensus 148 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 148 VSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD 221 (465)
T ss_pred chhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence 4455668999999999999999999999999999999999999988 499999998888777666655455444
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-09 Score=106.33 Aligned_cols=164 Identities=13% Similarity=0.057 Sum_probs=112.4
Q ss_pred hhhHHHHHHHHHH-HHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhc
Q psy4866 314 FTGVQSIIAYANT-IFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIE 391 (537)
Q Consensus 314 ~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (537)
+........+.|. +.++.+.+. ..++......++..++.++.|+++||+|||+.+..+.++..++.+++.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~----- 88 (366)
T TIGR00886 14 FSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV----- 88 (366)
T ss_pred HHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh-----
Confidence 3345566677775 445566653 345777788899999999999999999999999999988888877765531
Q ss_pred cccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh--------
Q psy4866 392 LQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKH-------- 463 (537)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-------- 463 (537)
.+.+..++..++.+.+. ... +....++.|.+|+++|+++.++.....++|..+++.+.+.+...
T Consensus 89 ------~~~~~~~~~~~~~g~~~-~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~ 160 (366)
T TIGR00886 89 ------QSYSVLLLLRLFIGIAG-GSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLP 160 (366)
T ss_pred ------hhHHHHHHHHHHHHHhc-hhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 02333444444444443 223 33457889999999999999999988888888888877766653
Q ss_pred --hccchhh-hHhhHHHHHHHHHHHhhccC
Q psy4866 464 --IGMYSNF-LFGGVSSLVCTVYLYYFLLE 490 (537)
Q Consensus 464 --~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 490 (537)
.+|++.+ ...+++..+..++.+.+.++
T Consensus 161 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (366)
T TIGR00886 161 AHLAWGWAFVIVPAGILLLPALLIFFVGAD 190 (366)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHhccc
Confidence 3788777 43344444444444444444
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.7e-09 Score=107.46 Aligned_cols=147 Identities=16% Similarity=0.079 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhc
Q psy4866 338 DYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLG 417 (537)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (537)
+.......++.+++.++.|++.||+|||+.+..+.++..++.++......... ....+..++.-++.+.+.+..
T Consensus 59 ~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~~~~~~r~l~G~~~g~~ 132 (502)
T TIGR00887 59 AAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSP------KSVMATLCFWRFWLGVGIGGD 132 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCccc------chHHHHHHHHHHHHHHHHhhh
Confidence 35677788899999999999999999999999888888887766554210000 000233445555556665554
Q ss_pred cccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH-----------------------hhccchhhhHhh
Q psy4866 418 FGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK-----------------------HIGMYSNFLFGG 474 (537)
Q Consensus 418 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-----------------------~~g~~~~~~~~~ 474 (537)
. +....++.|.+|++.|++++++.+....+|..+++.+...+.. ..+|+..+.+.+
T Consensus 133 ~-~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ 211 (502)
T TIGR00887 133 Y-PLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGA 211 (502)
T ss_pred h-HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHH
Confidence 4 4456999999999999999999999999999998887765532 136887775555
Q ss_pred HHHHHHHHHHHhhccCCC
Q psy4866 475 VSSLVCTVYLYYFLLETK 492 (537)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~ 492 (537)
+..++. ++..+++||+.
T Consensus 212 ip~~i~-~~~~~~lpESp 228 (502)
T TIGR00887 212 VPALLA-LYFRLTIPETP 228 (502)
T ss_pred HHHHHH-HHHHHhCCCCH
Confidence 444443 33346678764
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.8e-10 Score=91.61 Aligned_cols=135 Identities=19% Similarity=0.166 Sum_probs=103.6
Q ss_pred HHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccch
Q psy4866 343 LFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLF 422 (537)
Q Consensus 343 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (537)
...++.+++.++.+++.||++||+.+..+..+..++.+.+... .+.+...+...+.+.+.+.. .+..
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~~~-~~~~ 72 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS------------SNITVLIIARFLQGFGAAFA-LVAG 72 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh------------ccHHHHHHHHHHHHHHHHHH-HHhH
Confidence 3467788899999999999999999988887777776655442 23344444455555554443 3456
Q ss_pred hhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhHHHHHHHHHHHhhccC
Q psy4866 423 TPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFLLE 490 (537)
Q Consensus 423 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (537)
..+..|.+|++.|+++.++.+....++..+++.+.+.+.+..+++..+.+.+.+.+++.+..+.+.||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 73 AALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 68899999999999999999999999999999999999998888888888777777776666555443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.3e-09 Score=106.43 Aligned_cols=157 Identities=15% Similarity=0.139 Sum_probs=111.3
Q ss_pred HHhhhHHHHHHHHHHHHHh-cCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcc-cCCcHHHHHhhHHHHHHHHHHHHHHHh
Q psy4866 312 RAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDR-AGRRVLFLVSSAGCSLFSFIAGLYYYV 388 (537)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (537)
..-.+++.+..+++.|+.+ .+.+. ++......+.....+..+++|+++|| +|||+.+..+.++..++.+++.+..
T Consensus 25 ~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~-- 102 (489)
T PRK10207 25 WERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL-- 102 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc--
Confidence 3334466777777777655 34442 23344555566666777789999999 9999999999999999887776531
Q ss_pred hhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCcc--ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy4866 389 TIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSN--MKAVSCAVINILCTTLGLISYKLFFLMDKHIGM 466 (537)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 466 (537)
.......+...+.+.+.+. ..+...+++.|.+|++ +|+.++++.+...++|.+++|.+.|++.++.||
T Consensus 103 ---------~~~~ll~~~~~l~~ig~g~-~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw 172 (489)
T PRK10207 103 ---------LKPDLIFIALGTIAVGNGL-FKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGY 172 (489)
T ss_pred ---------cchhHHHHHHHHHHhcccc-ccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhCh
Confidence 1112222334444444443 3445568999999887 457799999999999999999999999999999
Q ss_pred chhhhHhhHHHHHH
Q psy4866 467 YSNFLFGGVSSLVC 480 (537)
Q Consensus 467 ~~~~~~~~~~~~~~ 480 (537)
++.|++.++..+++
T Consensus 173 ~~~F~i~~i~~~~~ 186 (489)
T PRK10207 173 SVTYNLCGAGLIIA 186 (489)
T ss_pred HHHHHHHHHHHHHH
Confidence 99888865544433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-09 Score=110.66 Aligned_cols=135 Identities=13% Similarity=0.190 Sum_probs=110.8
Q ss_pred HHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHhHhhhhhhhhhhhhhcc
Q psy4866 108 WVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSV--LGLYVMRTLQGFSMAAIYVISPMYLGEI 185 (537)
Q Consensus 108 ~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 185 (537)
+......+....+.++.+++.||+|||+++.++.++.+++.++..+.++. +..++.-++.+++.+..++....+..|.
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 438 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL 438 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34445566777888999999999999999999999998888888777654 5555666777788888888899999999
Q ss_pred CCCcccchhhhHhHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy4866 186 SETSIRGTIGTLFQISCHLGILYTYVLGSE--LSYMNYLTYSLIIPIIFTVTFMFMPES 242 (537)
Q Consensus 186 ~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~--~~wr~~~~~~~~~~~~~~~~~~~~~es 242 (537)
+|++.|+.++++.+....+|.+++|.+.+. .++...+.+.+...++..+..+++||+
T Consensus 439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet 497 (505)
T TIGR00898 439 YPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPET 497 (505)
T ss_pred ccHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCC
Confidence 999999999999999999999999988873 245667777777777777777788887
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.8e-09 Score=104.61 Aligned_cols=168 Identities=15% Similarity=0.143 Sum_probs=136.1
Q ss_pred HHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhh--HHHHHHHHHHHH
Q psy4866 69 VTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRK--WSLLMTGPITTA 146 (537)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr--~~l~~~~~l~~~ 146 (537)
++++...+.+|++.- .......-.+ ++|++..++..+.-+..+...+|++++|++.||+|.| ++++++++++.+
T Consensus 286 fLia~~l~~dg~~ti-~~~~~i~a~~---~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~ 361 (477)
T PF11700_consen 286 FLIAYFLYSDGVNTI-ISFAGIYATE---VLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWII 361 (477)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHH---hcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 333333444554333 2222334445 8999999999999999999999999999999999998 899998888866
Q ss_pred HHHHHHH--------HhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh--
Q psy4866 147 SWIIAMY--------SRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-- 216 (537)
Q Consensus 147 ~~~~~~~--------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~-- 216 (537)
..+...+ .++.+.+.+.-++.|+..|..++..-++.+|..|+++.+..+|++....-....+||++.+.+
T Consensus 362 i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~ 441 (477)
T PF11700_consen 362 IPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITD 441 (477)
T ss_pred HHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555 568888999999999999999999999999999999999999999999999999999988775
Q ss_pred ---hHHHHHHHHHHHHHHHHHHhhccc
Q psy4866 217 ---SYMNYLTYSLIIPIIFTVTFMFMP 240 (537)
Q Consensus 217 ---~wr~~~~~~~~~~~~~~~~~~~~~ 240 (537)
+-|+.+....++.++.++++++++
T Consensus 442 ~tg~~r~g~~~l~~lf~~gl~ll~~v~ 468 (477)
T PF11700_consen 442 ATGSQRYGFLFLLVLFLIGLILLFFVD 468 (477)
T ss_pred HhCCchhHHHHHHHHHHHHHHHHhhcc
Confidence 367888877777777777766664
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.4e-09 Score=100.50 Aligned_cols=180 Identities=10% Similarity=-0.034 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH-hcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHH
Q psy4866 302 FVFMAFLAVFRAFTGVQSIIAYANTIFA-SSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFS 379 (537)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 379 (537)
.++...+.+...+..........+.+-+ +.+.+. +.+....+..+...+.++..|++.||+|.|+.+..+.++..+..
T Consensus 35 ~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~ 114 (462)
T PRK15034 35 NLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPC 114 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 3444444444433333344444444433 345542 34466677788888899999999999999999999988887777
Q ss_pred HHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q psy4866 380 FIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFL 459 (537)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 459 (537)
+...+.... ..++.+..++.-++.+.+ +..+ +.....+++.+|+++||++.|+....+++|..+++.+.+.
T Consensus 115 ~~~~~a~~~-------~~~s~~~lli~r~l~Gig-g~~f-~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 115 VWLGIAVQN-------PNTPFGIFIVIALLCGFA-GANF-ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred HHHHHHHcc-------cCCCHHHHHHHHHHHHHH-HHhH-HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 766542100 012344455555555554 3334 4455888999999999999999987777777766665544
Q ss_pred HH-----Hhh-------------ccchhhhHhhHHHHHHHHHHHhhccC
Q psy4866 460 MD-----KHI-------------GMYSNFLFGGVSSLVCTVYLYYFLLE 490 (537)
Q Consensus 460 l~-----~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (537)
+. +.. +++.+..+...+.++..++.+++.++
T Consensus 186 ~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~ 234 (462)
T PRK15034 186 VIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMND 234 (462)
T ss_pred HHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33 322 24445556666666666666555444
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.5e-09 Score=102.21 Aligned_cols=145 Identities=10% Similarity=0.014 Sum_probs=108.8
Q ss_pred hHHhhhcCCCCCCCCCChhhHHHHHHH-HHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHH------HhhHHHH
Q psy4866 88 VLEELLSKESPIPMSPNEGSWVVAIIE-IGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMY------SRSVLGL 160 (537)
Q Consensus 88 ~~~~~~~~~~~~~~s~~~~~~~~s~~~-~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~------~~~~~~l 160 (537)
..+.+.+ |.|.+.+++|++..... .+..++.++.|++.||+|+|+.+.++.++.++..+.... .++...+
T Consensus 230 ~~~~~l~---~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (390)
T TIGR02718 230 LSKLYLV---DAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVA 306 (390)
T ss_pred HhhHHHH---hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHH
Confidence 3455566 78999999999988876 466778899999999999999998877665333332221 1233344
Q ss_pred HHHHHHHHhHhhhhhhhhhhhhhccCCC-cccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHH
Q psy4866 161 YVMRTLQGFSMAAIYVISPMYLGEISET-SIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVT 235 (537)
Q Consensus 161 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~~~~~~~~ 235 (537)
....++.+++.+...+...+.+.+..++ +++++.+++.+...++|..++|.+++. .||+..|++.+++.++..+.
T Consensus 307 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 307 WSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 5555666777788878888887777766 788999999999999999999988875 47888888887776665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.8e-09 Score=105.20 Aligned_cols=149 Identities=11% Similarity=0.101 Sum_probs=113.3
Q ss_pred HhhhcCCCCCCCCCChhhHHHH-HHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHH---HHH-hhHHHHHHHH
Q psy4866 90 EELLSKESPIPMSPNEGSWVVA-IIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIA---MYS-RSVLGLYVMR 164 (537)
Q Consensus 90 ~~~~~~~~~~~~s~~~~~~~~s-~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~---~~~-~~~~~l~~~r 164 (537)
|.+.+ ++|.+..+.+++.. ...++..++.+++|+++||+|+|+.+.++.++.+++.++. +.. ++.+.+.+.-
T Consensus 247 ~~l~~---~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~ 323 (491)
T PRK11010 247 TFLIR---GVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAV 323 (491)
T ss_pred HHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 44455 68999999999974 6668999999999999999999988877666555544332 232 3555555566
Q ss_pred HHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhhccc
Q psy4866 165 TLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFMFMP 240 (537)
Q Consensus 165 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~~~~~~~~~~~~~ 240 (537)
+++.++.|...+...++..+.++++.++...++.+...++|..+++.+.+. +||+..|.+.++++++.++...+++
T Consensus 324 ~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 324 FFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666666667778888999999999999999999889988776666554 4899999999888888776666554
Q ss_pred C
Q psy4866 241 E 241 (537)
Q Consensus 241 e 241 (537)
+
T Consensus 404 ~ 404 (491)
T PRK11010 404 Q 404 (491)
T ss_pred h
Confidence 3
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.4e-09 Score=104.13 Aligned_cols=158 Identities=10% Similarity=0.039 Sum_probs=106.3
Q ss_pred HhhhHHHHHHHHHHHHHh-cCCCCC-hhHHHHHHHHHHHHHhhhHhhhhcc-cCCcHHHHHhhHHHHHHHHHHHHHHHhh
Q psy4866 313 AFTGVQSIIAYANTIFAS-SETFLP-SDYISILFAIILLVSIFPSTYYIDR-AGRRVLFLVSSAGCSLFSFIAGLYYYVT 389 (537)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (537)
...+++.+..+++.++.+ .+.+.. +...............+++|+++|| +|||+.+..+.++..++..++.+.
T Consensus 33 ~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~---- 108 (500)
T PRK09584 33 ERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS---- 108 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----
Confidence 334466677778888744 455432 2233333333444445689999999 599999999998888877666542
Q ss_pred hccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy4866 390 IELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNM--KAVSCAVINILCTTLGLISYKLFFLMDKHIGMY 467 (537)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 467 (537)
....+...+...+.+.+.+.. .+...++..|.+|++. +..+.++.+...++|.+++|.+.|++.+..||+
T Consensus 109 -------~~~~~~l~~~~~l~gig~g~~-~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~ 180 (500)
T PRK09584 109 -------GHDAGIVYMGMATIAVGNGLF-KANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWS 180 (500)
T ss_pred -------cccHHHHHHHHHHHHHhhhcc-cCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHH
Confidence 112222333334445544433 3445578899998653 456788889999999999999999999999999
Q ss_pred hhhhHhhHHHHHHHH
Q psy4866 468 SNFLFGGVSSLVCTV 482 (537)
Q Consensus 468 ~~~~~~~~~~~~~~~ 482 (537)
..|.+.++..+++.+
T Consensus 181 ~~F~i~~i~~~i~~i 195 (500)
T PRK09584 181 VAFALSVVGMLITVV 195 (500)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999887755555443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.1e-09 Score=96.72 Aligned_cols=162 Identities=11% Similarity=-0.002 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccC
Q psy4866 317 VQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYE 395 (537)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (537)
.+.+....+.+-++.+.+. +..++..+..+.+.+.+++.|++.||+|.|+....+.++..+-.+.+.+...
T Consensus 30 W~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~-------- 101 (417)
T COG2223 30 WTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVT-------- 101 (417)
T ss_pred HHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHcc--------
Confidence 3334444444445556653 4457777888999999999999999999999999999988888777766531
Q ss_pred CcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc---cchhhhH
Q psy4866 396 IPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG---MYSNFLF 472 (537)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g---~~~~~~~ 472 (537)
..+.+..++...+.+.+.+ ...+...++++.+|++++|.++|+.. .+|+|..+...+.+.+....| |+.+..+
T Consensus 102 -~~~~~~ll~~gll~G~~Ga--sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i 177 (417)
T COG2223 102 -YPSTWQLLVIGLLLGLAGA--SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGI 177 (417)
T ss_pred -CCchHHHHHHHHHHhcccc--eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1122334444444444322 23445589999999999999999999 999999999999999999988 8888888
Q ss_pred hhHHHHHHHHHHHhhccC
Q psy4866 473 GGVSSLVCTVYLYYFLLE 490 (537)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ 490 (537)
.....++..+..++...+
T Consensus 178 ~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 178 YVVALAIAAVLAWLGMND 195 (417)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 888888877777666544
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.8e-09 Score=102.61 Aligned_cols=152 Identities=14% Similarity=0.097 Sum_probs=96.4
Q ss_pred hhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHH--H--HhhHHHHHH
Q psy4866 87 PVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAM--Y--SRSVLGLYV 162 (537)
Q Consensus 87 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~--~--~~~~~~l~~ 162 (537)
..+|.+.++ ++|.+..+.++..++..++..+++++.|+++||+|||+++.++.++.++..+... . .++....+.
T Consensus 264 ~~lp~~l~~--~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (432)
T PRK10406 264 TYMQKYLVN--TAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFG 341 (432)
T ss_pred HHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 345555431 6788888899999988888899999999999999999988777655433332221 1 122232222
Q ss_pred HHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHH-HHHHHHHHhhhh---h-HHHHHHHHHHHHHHHHHHhh
Q psy4866 163 MRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHL-GILYTYVLGSEL---S-YMNYLTYSLIIPIIFTVTFM 237 (537)
Q Consensus 163 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~i~~~l~~~~---~-wr~~~~~~~~~~~~~~~~~~ 237 (537)
.-++.+++.+...+....++.|++|++.|+.++++.+....+ +....|.+...+ + |...+++.++..++..+..+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~ 421 (432)
T PRK10406 342 LVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSL 421 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 222233333444455667889999999999999997655443 233355555443 3 55566666666666555555
Q ss_pred ccc
Q psy4866 238 FMP 240 (537)
Q Consensus 238 ~~~ 240 (537)
+++
T Consensus 422 ~l~ 424 (432)
T PRK10406 422 MLH 424 (432)
T ss_pred Hhh
Confidence 543
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.2e-09 Score=102.92 Aligned_cols=114 Identities=15% Similarity=0.172 Sum_probs=97.4
Q ss_pred CCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhHhhhhhhhhhh
Q psy4866 102 SPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS-RSVLGLYVMRTLQGFSMAAIYVISPM 180 (537)
Q Consensus 102 s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~ 180 (537)
+..+.+++.+...++..++.+++++++||+|+|+++.++.++.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888899999999999999999999999999998888887777665 36677778889999999999999999
Q ss_pred hhhccCC-------CcccchhhhHhHHHHHHHHHHHHHHhhh
Q psy4866 181 YLGEISE-------TSIRGTIGTLFQISCHLGILYTYVLGSE 215 (537)
Q Consensus 181 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~i~~~l~~~ 215 (537)
+++|..+ ++++|.+.++.+....+|..+++.+.+.
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ 376 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGL 376 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865 4557999999999999999888877765
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.5e-09 Score=103.20 Aligned_cols=129 Identities=13% Similarity=0.079 Sum_probs=91.5
Q ss_pred chhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHH-HH---HHhhHHHH
Q psy4866 85 SAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWII-AM---YSRSVLGL 160 (537)
Q Consensus 85 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~-~~---~~~~~~~l 160 (537)
.....|.+.++ .+|.+..+.++....+.++..++.+++|+++||+|||++++.+.++..+..+. .. ..+++..+
T Consensus 257 ~~~~~p~~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (434)
T PRK15075 257 ITVYTPTFGKT--VLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARM 334 (434)
T ss_pred HHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 44446666652 47899889999999999999999999999999999999888765544332221 11 12344445
Q ss_pred HHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHh-HHHHHHHHHHHHHHhhh
Q psy4866 161 YVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLF-QISCHLGILYTYVLGSE 215 (537)
Q Consensus 161 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~i~~~l~~~ 215 (537)
.+..++.|++.+...+....++.|.+|+++|+...++. +.+..++..++|.+.+.
T Consensus 335 ~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~ 390 (434)
T PRK15075 335 LAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTW 390 (434)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHH
Confidence 45566667777777777778899999999999999985 33444445556666544
|
|
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.2e-09 Score=101.29 Aligned_cols=174 Identities=16% Similarity=0.151 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHH
Q psy4866 63 LFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGP 142 (537)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~ 142 (537)
+...+.+++.++.-+.|.+.-. .....+.+ +-|++..+..++.....+...++.+++..+.||+|||+.++++..
T Consensus 269 ~~~~i~~~v~~~qq~sGi~ai~--~Yst~i~~---~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~ 343 (485)
T KOG0569|consen 269 RPLLIGIVVSFAQQFSGINAIF--FYSTSIFK---TAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLS 343 (485)
T ss_pred HHHHHHHHHHHHHHhcCcceeH--HHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 3344555555555555544332 23345566 779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh---hHH------HHHHHHHHHHhHhhhh-hhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHH-
Q psy4866 143 ITTASWIIAMYSR---SVL------GLYVMRTLQGFSMAAI-YVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYV- 211 (537)
Q Consensus 143 l~~~~~~~~~~~~---~~~------~l~~~r~l~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~- 211 (537)
++.+..+++.... +.. ..+++.++..++.+.. -|+..-+.+|.+|++.|+.++++......+..++-..
T Consensus 344 ~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~ 423 (485)
T KOG0569|consen 344 LMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFA 423 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9988887776532 111 1233344333333322 4777888999999999999999988777777665433
Q ss_pred ---HhhhhhHHHHHHHHHHHHHH-HHHHhhcccCC
Q psy4866 212 ---LGSELSYMNYLTYSLIIPII-FTVTFMFMPES 242 (537)
Q Consensus 212 ---l~~~~~wr~~~~~~~~~~~~-~~~~~~~~~es 242 (537)
+...+|- +.|....+++++ .+..+..+|||
T Consensus 424 fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPET 457 (485)
T KOG0569|consen 424 FPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPET 457 (485)
T ss_pred HHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCccc
Confidence 3333454 566666666655 44566779999
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.9e-09 Score=106.06 Aligned_cols=167 Identities=16% Similarity=0.276 Sum_probs=146.3
Q ss_pred HHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhh--hhHHHHHHHHHHHHHH
Q psy4866 71 ACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIG--RKWSLLMTGPITTASW 148 (537)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G--rr~~l~~~~~l~~~~~ 148 (537)
..++..+..+........+|.+.+ +.+.++.+.+.+.++..+...++.++.|+++|+.. ++.+..+++++.+++.
T Consensus 303 ~~~~~~~~~~g~~~p~~~l~~~~~---~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~ 379 (509)
T KOG2504|consen 303 LALSNLFAYLGFNVPFVYLPSYAK---SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR 379 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH
Confidence 334444445555666777899999 89999999999999999999999999999999988 5677888889999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh-----hHHHHHH
Q psy4866 149 IIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-----SYMNYLT 223 (537)
Q Consensus 149 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~-----~wr~~~~ 223 (537)
+.++++++++.++..-.+.|++.|.........+.|..+.++-..+.++.....+++.++||.+++.+ +|...|+
T Consensus 380 ~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~ 459 (509)
T KOG2504|consen 380 LFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFY 459 (509)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehh
Confidence 99999999999999999999999999888888999999999999999999999999999999998864 5888999
Q ss_pred HHHHHHHHHHHHhhccc
Q psy4866 224 YSLIIPIIFTVTFMFMP 240 (537)
Q Consensus 224 ~~~~~~~~~~~~~~~~~ 240 (537)
.+++..++..+.+++.|
T Consensus 460 ~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 460 FCGLCFLLSAVLLLILR 476 (509)
T ss_pred hcChHHHHHHHHHHHhH
Confidence 99988888777776665
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-08 Score=100.84 Aligned_cols=157 Identities=6% Similarity=-0.014 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCC
Q psy4866 318 QSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEI 396 (537)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (537)
.......|.+.++.+.+. +.+.......++..++.+..|++.||+|||+.+..+..+.+++.+++.....
T Consensus 20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~--------- 90 (410)
T TIGR00885 20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE--------- 90 (410)
T ss_pred HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 344566677777666653 4557778889999999999999999999999999999998888766543210
Q ss_pred cccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh-------------
Q psy4866 397 PYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKH------------- 463 (537)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~------------- 463 (537)
..+.+..+...++.+.+.+....+ ...++.+..|++++++..++.+....+|..++|.+.+.+...
T Consensus 91 ~~~~~~~l~~~~l~G~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~ 169 (410)
T TIGR00885 91 IMNYTLFLVGLFILTAGLGFLETA-ANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKL 169 (410)
T ss_pred hccHHHHHHHHHHHHhhHHHHHhh-hhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhc
Confidence 123344455555666666554433 347777888999999999999999999999999998877532
Q ss_pred -------------hccchhhhHhhHHHHHHHHHH
Q psy4866 464 -------------IGMYSNFLFGGVSSLVCTVYL 484 (537)
Q Consensus 464 -------------~g~~~~~~~~~~~~~~~~~~~ 484 (537)
.+|+.+|.+.+++.++..++.
T Consensus 170 ~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 170 SPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778887777666554443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.1e-09 Score=103.61 Aligned_cols=155 Identities=19% Similarity=0.119 Sum_probs=113.1
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccc
Q psy4866 321 IAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTS 400 (537)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (537)
..-++.+..+.|.+.+..+......+...++.++.|+++|.+|||..++.+.++..++.++.+.. .+.
T Consensus 64 a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA------------~~~ 131 (599)
T PF06609_consen 64 ASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA------------QNM 131 (599)
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC------------CcH
Confidence 33445666677776666677778888999999999999999999999999999999998887653 233
Q ss_pred hhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhHHHHHH
Q psy4866 401 WVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVC 480 (537)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 480 (537)
...+....+.+.+.+. ..+....++|..|.+.|+.+.++.....-....+++.+...+..+.+|++.|++.++...++
T Consensus 132 ~~~iag~~l~GvgaG~--~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~ 209 (599)
T PF06609_consen 132 NTFIAGMVLYGVGAGV--QELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIA 209 (599)
T ss_pred HHHHHHHHHHHHhhHH--HHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHH
Confidence 3455555665655433 33444668999999999887776665544445566776666666678999999988887777
Q ss_pred HHHHHhhcc
Q psy4866 481 TVYLYYFLL 489 (537)
Q Consensus 481 ~~~~~~~~~ 489 (537)
++..+++++
T Consensus 210 ~vl~~~fY~ 218 (599)
T PF06609_consen 210 LVLIFFFYF 218 (599)
T ss_pred HHHHHHHhC
Confidence 766555543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-08 Score=100.08 Aligned_cols=147 Identities=13% Similarity=0.110 Sum_probs=104.4
Q ss_pred HhhhcCCCCCCCCCChhhHHHHHHH-HHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHH---HHH-hhHHHHHHHH
Q psy4866 90 EELLSKESPIPMSPNEGSWVVAIIE-IGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIA---MYS-RSVLGLYVMR 164 (537)
Q Consensus 90 ~~~~~~~~~~~~s~~~~~~~~s~~~-~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~---~~~-~~~~~l~~~r 164 (537)
+.+.+ ++|.+..+.+++.+... ++..++.+++|++.||+|+|+.+.++.++..+..+.. ++. ++.+.+++.-
T Consensus 234 ~~l~~---~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 310 (402)
T PRK11902 234 TFLIR---GAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAI 310 (402)
T ss_pred HHHHH---hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 34556 78999999999986654 5689999999999999999998887777666554433 343 3555555444
Q ss_pred ----HHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhcc
Q psy4866 165 ----TLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFM 239 (537)
Q Consensus 165 ----~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~~wr~~~~~~~~~~~~~~~~~~~~ 239 (537)
+..|++.+...+....++.+.+|.++++...+....+..++..++..+...+||+..|.+.++++++.++..+..
T Consensus 311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~ 389 (402)
T PRK11902 311 GIENLCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLM 389 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777788888888888887776654444444444444455555566799999999998887766555443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-07 Score=95.79 Aligned_cols=150 Identities=14% Similarity=0.180 Sum_probs=120.5
Q ss_pred cchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhh-hhhhHHHHHHHHHHHHHHHHHHHHhh------
Q psy4866 84 WSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR-IGRKWSLLMTGPITTASWIIAMYSRS------ 156 (537)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~l~~~~~~~~~~~~~------ 156 (537)
+.......+.+ .+|.+.++...+...+....-+..+++|+++|+ +||+++++++.++..+|.++.+++..
T Consensus 6 m~aiLvlYl~~---~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~ 82 (654)
T TIGR00926 6 MRTILVLYFLN---FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHP 82 (654)
T ss_pred cHHHHHHHHHH---HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccc
Confidence 34444556666 789999999999999999999999999999997 89999999999999999988877521
Q ss_pred --HHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcc---cchhhhHhHHHHHHHHHHHHHHhhhh-----------hHHH
Q psy4866 157 --VLGLYVMRTLQGFSMAAIYVISPMYLGEISETSI---RGTIGTLFQISCHLGILYTYVLGSEL-----------SYMN 220 (537)
Q Consensus 157 --~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~i~~~l~~~~-----------~wr~ 220 (537)
....+++-.+..+|.|+.-+...+...|.+++++ |-..+.++..+.++|.++++.+..++ +|..
T Consensus 83 ~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~ 162 (654)
T TIGR00926 83 LHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPL 162 (654)
T ss_pred hHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHH
Confidence 2336677888889999999999999999997543 56778888889999999887776543 4888
Q ss_pred HHHHHHHHHHHHHHHh
Q psy4866 221 YLTYSLIIPIIFTVTF 236 (537)
Q Consensus 221 ~~~~~~~~~~~~~~~~ 236 (537)
.|.+.++..++.+++.
T Consensus 163 aF~i~~i~m~ia~lvf 178 (654)
T TIGR00926 163 AFGVPAILMILALIVF 178 (654)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8988888877655443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.2e-08 Score=93.31 Aligned_cols=126 Identities=8% Similarity=0.003 Sum_probs=99.7
Q ss_pred CCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhh
Q psy4866 98 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVI 177 (537)
Q Consensus 98 ~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 177 (537)
.+|+++.+.++..+.+..+..+|.++.+++.||+|+|+++.++.++..++.++....++... ..+-++.|++.+..+|.
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~ 250 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPT 250 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999998888888887766665554333 34566899999999999
Q ss_pred hhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh----hHHHHHHHHH
Q psy4866 178 SPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL----SYMNYLTYSL 226 (537)
Q Consensus 178 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~----~wr~~~~~~~ 226 (537)
..+...+..|++ .+.+.++. ....+|.++.|.+.+.+ +.+..|++..
T Consensus 251 ~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 251 IFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred HHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 999999988754 45666665 45668888888766553 5566666433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-08 Score=112.73 Aligned_cols=142 Identities=12% Similarity=0.037 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhcc
Q psy4866 339 YISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGF 418 (537)
Q Consensus 339 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (537)
+...+..+..++..+++|+++||++||+++.....+..+.......... ..+.+..++..++.+.+.++ +
T Consensus 56 l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~---------~~s~~~l~~~~~l~gi~~a~-~ 125 (1140)
T PRK06814 56 LAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH---------LNSVPLLFAALFLMGIHSAL-F 125 (1140)
T ss_pred HHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH---------HhhHHHHHHHHHHHHHHHHh-h
Confidence 4455667788899999999999999999764322222211111111110 12344555555555555544 4
Q ss_pred ccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhHHHHHHHHHHHhhccCC
Q psy4866 419 GPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFLLET 491 (537)
Q Consensus 419 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (537)
.|...+++.+.+|++.++.++|+.++...+|.+++|.+.|.+.+..||...|...+++.++ .+++.++.++.
T Consensus 126 ~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 197 (1140)
T PRK06814 126 GPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVL-GWLASLFIPKT 197 (1140)
T ss_pred chHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-HHHHHhhCCCC
Confidence 5677799999999999999999999999999999999999999998888777333333333 33333444443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.4e-09 Score=96.27 Aligned_cols=175 Identities=14% Similarity=0.135 Sum_probs=143.2
Q ss_pred HHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHH
Q psy4866 64 FSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPI 143 (537)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l 143 (537)
+-+..++++-..+.+|.+.-..... ..-.. ++|++..++.++.-...+..++|++++|+|.||+|.|+++.+++++
T Consensus 252 ~~i~~FLiA~~~~~DGv~til~~~~-~fg~~---~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi 327 (438)
T COG2270 252 KNLVLFLIARFFYIDGVNTILAMGG-VFGAA---DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVI 327 (438)
T ss_pred cchHHHHHHHHHHHhhHHHHHHHHH-HHHHH---HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHH
Confidence 3455566666667777654433222 23344 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh-----hH
Q psy4866 144 TTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-----SY 218 (537)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~-----~w 218 (537)
..+.++...+...-..+.++-.+.|...|+.+..+-++..+.+|+++-++.+++++...-.+..+||.+.+.+ +-
T Consensus 328 ~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~ 407 (438)
T COG2270 328 LSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSS 407 (438)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcch
Confidence 9998888877777777778889999999999999999999999999999999999999999999999887664 45
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCC
Q psy4866 219 MNYLTYSLIIPIIFTVTFMFMPES 242 (537)
Q Consensus 219 r~~~~~~~~~~~~~~~~~~~~~es 242 (537)
|.-+....++..+.+++.+.+|+.
T Consensus 408 r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 408 RAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred hhHHHHHHHHHHhhHhhEEeecCC
Confidence 766666666666666666666643
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.8e-09 Score=116.44 Aligned_cols=133 Identities=15% Similarity=0.106 Sum_probs=115.0
Q ss_pred CCCCCCC-hhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhh
Q psy4866 98 PIPMSPN-EGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYV 176 (537)
Q Consensus 98 ~~~~s~~-~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 176 (537)
.+|.+.. +.+++.+...++..++.+++|+++||+++|+++.++.++.+++.++..+..+++.++++.++.|++.++..+
T Consensus 262 ~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 341 (1146)
T PRK08633 262 VLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIV 341 (1146)
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Confidence 6889988 999999999999999999999999999999999999888888888888888999999999999999999999
Q ss_pred hhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHHH
Q psy4866 177 ISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-----SYMNYLTYSLIIPI 230 (537)
Q Consensus 177 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~-----~wr~~~~~~~~~~~ 230 (537)
...+++.+.+|+++||+++++.+....+|.++++.++..+ ++...+++.+.+.+
T Consensus 342 ~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 400 (1146)
T PRK08633 342 PLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTL 400 (1146)
T ss_pred HHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 9999999999999999999999998888887777666543 34455555554433
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.1e-09 Score=98.27 Aligned_cols=142 Identities=17% Similarity=0.248 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhh
Q psy4866 337 SDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNL 416 (537)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (537)
+++....+++.+++.++..|.++||+|||.++..+.+..++...+.+.. .....++..=+.++.+-.
T Consensus 70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S-------------~~F~afv~aR~l~Gi~kg 136 (451)
T KOG2615|consen 70 AGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS-------------RNFAAFVLARFLGGIFKG 136 (451)
T ss_pred hhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhhccC
Confidence 4577788999999999999999999999999999999888877766652 233333332333343333
Q ss_pred ccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH---hhccchhhhHhhHHHHHH---HHHHHhhccC
Q psy4866 417 GFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK---HIGMYSNFLFGGVSSLVC---TVYLYYFLLE 490 (537)
Q Consensus 417 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~---~~g~~~~~~~~~~~~~~~---~~~~~~~~~~ 490 (537)
.. .+..++++|++++++|+.+++.++...++|.++||.++|++.. ..|.+..++....++++. .....+++||
T Consensus 137 nl-~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpE 215 (451)
T KOG2615|consen 137 NL-SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPE 215 (451)
T ss_pred ch-HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 33 4556999999999999999999999999999999999999987 445443332222222222 2334456777
Q ss_pred CC
Q psy4866 491 TK 492 (537)
Q Consensus 491 ~~ 492 (537)
|-
T Consensus 216 TL 217 (451)
T KOG2615|consen 216 TL 217 (451)
T ss_pred cc
Confidence 64
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.9e-09 Score=98.36 Aligned_cols=138 Identities=15% Similarity=0.209 Sum_probs=104.7
Q ss_pred hhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhh----hhhhHH-HHHHHHHHHHHHH
Q psy4866 75 AFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR----IGRKWS-LLMTGPITTASWI 149 (537)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr----~Grr~~-l~~~~~l~~~~~~ 149 (537)
.|......++.+ ++.+ ++|++....+.+.-+..+...+.+++.|..+|| |||||. +..+.++..++.+
T Consensus 45 qf~wA~elsy~t----Pyl~---~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~ 117 (498)
T KOG0637|consen 45 QFGWALELSYLT----PYLQ---SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLF 117 (498)
T ss_pred HHHHHHHhcccc----HHHH---HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHh
Confidence 444444444433 3444 678888888888888888999999999999996 897655 5556777777878
Q ss_pred HHHHHhhH-----------------HHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccch-hhhHhHHHHHHHHHHHHH
Q psy4866 150 IAMYSRSV-----------------LGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGT-IGTLFQISCHLGILYTYV 211 (537)
Q Consensus 150 ~~~~~~~~-----------------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~i~~~ 211 (537)
+.+++.++ ..++++-.+.=++.-.....+-+++.|.+.++++.+ +++.+....++|..+|..
T Consensus 118 Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~ 197 (498)
T KOG0637|consen 118 LIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYA 197 (498)
T ss_pred hhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeee
Confidence 88877643 334455555666766788889999999997666666 999999999999999999
Q ss_pred HhhhhhHH
Q psy4866 212 LGSELSYM 219 (537)
Q Consensus 212 l~~~~~wr 219 (537)
++.+.+|+
T Consensus 198 ~g~y~~~~ 205 (498)
T KOG0637|consen 198 LGSYLGLY 205 (498)
T ss_pred cccccCce
Confidence 99887765
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.9e-08 Score=99.97 Aligned_cols=165 Identities=13% Similarity=0.051 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccC
Q psy4866 317 VQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYE 395 (537)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (537)
.+.+..+.+.+.++.+.+. +.+....+ +.......++.|++.||+|+|+++.++.++..++.++.++.....
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~sv-g~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~------ 115 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTV-GIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEV------ 115 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccc------
Confidence 4566777788777777653 22222222 222234555789999999999999999999999988777632100
Q ss_pred CcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhH
Q psy4866 396 IPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGV 475 (537)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 475 (537)
...+.+...+..++.+.+.+... +.....+.+.+| ++||++.|+......+|+++.+.+...+.. .++...|++.++
T Consensus 116 i~~s~~~l~l~r~l~G~G~~~~~-~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~v 192 (591)
T PTZ00207 116 IEGSVVRLSVYNGLMTLGCMLFD-LGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMS 192 (591)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHH
Confidence 01233334444444454443332 233466777887 568999999999999999876555554444 256667777777
Q ss_pred HHHHHHHHHHhhccCC
Q psy4866 476 SSLVCTVYLYYFLLET 491 (537)
Q Consensus 476 ~~~~~~~~~~~~~~~~ 491 (537)
+.++..++.+.+++..
T Consensus 193 l~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 193 FALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHHHhheeCC
Confidence 7777766666665443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.3e-08 Score=96.57 Aligned_cols=186 Identities=16% Similarity=0.084 Sum_probs=115.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhc----ccCCcHHHHHh-hHHHHHH
Q psy4866 305 MAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYID----RAGRRVLFLVS-SAGCSLF 378 (537)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~-~~~~~~~ 378 (537)
........++. +.....+++.|++..+.+. .......+..+.+++..++.|+++| |+|||+.++.+ .+...++
T Consensus 9 ~~~~~~Giq~~-~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~ 87 (477)
T TIGR01301 9 VASVAAGVQFG-WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFA 87 (477)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHH
Confidence 33333333333 5566667777888777753 3446667778899999999999999 59999998775 4444444
Q ss_pred HHHHHHHHHhhhc--cccCCcccc---hhhHHHHHHHHHHHhhccccchhhhccccCCcccc--chhhHHHHHHHHHHHH
Q psy4866 379 SFIAGLYYYVTIE--LQYEIPYTS---WVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMK--AVSCAVINILCTTLGL 451 (537)
Q Consensus 379 ~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~g~~ 451 (537)
++++.+....... .+.+..... +..++.+.+...+......|. .+++.|..|+++| +.+.++.+...++|+.
T Consensus 88 l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~lG~i 166 (477)
T TIGR01301 88 VILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMAIGNV 166 (477)
T ss_pred HHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 4444332110000 000000011 122223333344444444444 5899999998865 5799999999999999
Q ss_pred HHHHHHHHH--HHhh-------------ccchhhhHhhHHHHHHHHHHHhhccCCC
Q psy4866 452 ISYKLFFLM--DKHI-------------GMYSNFLFGGVSSLVCTVYLYYFLLETK 492 (537)
Q Consensus 452 ~~~~~~g~l--~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (537)
+++.+.+.. .+.. +.+..|++.+++.+++.++..+..+|..
T Consensus 167 lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 167 LGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 999988764 2221 3456787877778888777777777754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.9e-08 Score=94.34 Aligned_cols=162 Identities=18% Similarity=0.246 Sum_probs=123.5
Q ss_pred hhhhhhccchhhHHhhhcCCCCCC-CCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH-
Q psy4866 77 TTGMSFAWSAPVLEELLSKESPIP-MSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS- 154 (537)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~- 154 (537)
+.+...+......+.+.+ +.| .+....+.+.++..++-.+.-...+++..|+|.|++++++.+.+++=..+.+..
T Consensus 218 l~~~~~~~~~~f~~~yl~---~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~ 294 (400)
T PF03825_consen 218 LIGISHAAYYTFFSIYLQ---ELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS 294 (400)
T ss_pred HHHHHHHHHHHHHHHHHH---HcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444555555666 667 677778888888888889999999999999999999999999999988888887
Q ss_pred hhHHHHH----HHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHH-HHHHHHHHHHHHhhhh----------hHH
Q psy4866 155 RSVLGLY----VMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQI-SCHLGILYTYVLGSEL----------SYM 219 (537)
Q Consensus 155 ~~~~~l~----~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~i~~~l~~~~----------~wr 219 (537)
++.+... ....++|+..+..+..+..++.+.+|++.|+++.+++.. ..++|..+|..+++++ .|.
T Consensus 295 ~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~ 374 (400)
T PF03825_consen 295 DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWS 374 (400)
T ss_pred CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHH
Confidence 4544433 335679999999999999999999999999999999765 4688999888888763 355
Q ss_pred HHHHHHHHHHHHHHHH-hhcccC
Q psy4866 220 NYLTYSLIIPIIFTVT-FMFMPE 241 (537)
Q Consensus 220 ~~~~~~~~~~~~~~~~-~~~~~e 241 (537)
..+.+.+.+.++..++ +++.+|
T Consensus 375 ~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 375 AVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhhccC
Confidence 5666666665554433 334444
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.3e-08 Score=96.99 Aligned_cols=161 Identities=12% Similarity=0.018 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHHHhhhHhhhhccc-----CCcHHH-HHhhHHHHHHHHHHHHHHHhhhc
Q psy4866 319 SIIAYANTIFASSETFLP-SDYISILFAIILLVSIFPSTYYIDRA-----GRRVLF-LVSSAGCSLFSFIAGLYYYVTIE 391 (537)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 391 (537)
....-.|.+.++.|.+.. .+.... ..+...+ .++.|.+.||+ ||||.+ +.+.++.++....+.+..
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~-~~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~----- 78 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSL-VGLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV----- 78 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHH-HHHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC-----
Confidence 344456777888777632 222222 2333333 88999999998 788875 455555555544443321
Q ss_pred cccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc------
Q psy4866 392 LQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG------ 465 (537)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g------ 465 (537)
+....+......++.+.+. ....+...+++.|.+|+++|+.+.++......+|..+++.+.+.+.+..|
T Consensus 79 ----~~~~l~~l~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~ 153 (356)
T TIGR00901 79 ----PSTDLPLLAGLAFLIAFFS-ATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLI 153 (356)
T ss_pred ----cchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 0012222222222333333 33344556889999999999999999999999999999999999988888
Q ss_pred --cchhhhHhhHHHHHHHHHHHhhccCC
Q psy4866 466 --MYSNFLFGGVSSLVCTVYLYYFLLET 491 (537)
Q Consensus 466 --~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (537)
|+..|++.++..++..+..++..+|.
T Consensus 154 ~~wr~~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 154 TLWGYIFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 88888888777766555544445554
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.6e-09 Score=98.27 Aligned_cols=145 Identities=14% Similarity=0.037 Sum_probs=120.8
Q ss_pred ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHh
Q psy4866 336 PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFN 415 (537)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (537)
..++.+...++.+++.+++.|.+.||+|+|..+++|+..+....+++++. ...+..+++=.+-+.+.+
T Consensus 107 ~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg------------~sy~~l~vAR~LQgvgsA 174 (464)
T KOG3764|consen 107 QIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG------------NSYPMLFVARSLQGVGSA 174 (464)
T ss_pred chhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc------------chhHHHHHHHHHhhhhHH
Confidence 34577778899999999999999999999999999999999999998884 344555555556666665
Q ss_pred hccccchhhhccccCCccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhHHHHHHHHHHHhhccCCCC
Q psy4866 416 LGFGPLFTPLLSEYFSSNM-KAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFLLETKG 493 (537)
Q Consensus 416 ~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (537)
+.. ....+++++.+|.+. |++++|+.-.+..+|-.++|.++|.+++..|++.+|+++++++++-..+.++.++.++.
T Consensus 175 ~~~-tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 175 FAD-TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM 252 (464)
T ss_pred HHH-hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence 544 345589999999875 69999999999999999999999999999999999999999999988887666654443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.6e-08 Score=96.91 Aligned_cols=125 Identities=14% Similarity=0.094 Sum_probs=98.5
Q ss_pred HHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHH
Q psy4866 89 LEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR--SVLGLYVMRTL 166 (537)
Q Consensus 89 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l 166 (537)
.|.+.++ .+|.+....++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+ +++.+++..++
T Consensus 251 ~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l 328 (448)
T PRK09848 251 SLFYVRY--VLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAI 328 (448)
T ss_pred heeeEee--ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH
Confidence 4444442 4666555445555555677888999999999999999999999999888887777654 67777778889
Q ss_pred HHhHhhhhhhhhhhhhhccCCCc-------ccchhhhHhHHHHHHHHHHHHHHhhh
Q psy4866 167 QGFSMAAIYVISPMYLGEISETS-------IRGTIGTLFQISCHLGILYTYVLGSE 215 (537)
Q Consensus 167 ~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~i~~~l~~~ 215 (537)
.|+|.+...+...++..|..|.+ ++|...++.+....+|..+++.+.+.
T Consensus 329 ~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~ 384 (448)
T PRK09848 329 ASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF 384 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988654 35889999999999999888777654
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.6e-08 Score=94.77 Aligned_cols=173 Identities=12% Similarity=0.067 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-C-hhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHH
Q psy4866 302 FVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-P-SDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFS 379 (537)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 379 (537)
.++++...++..+= ....+-.|.+.++.+.+. + .+.+...+..+..+..+++|+++||+|.|+.+..+.+...+..
T Consensus 29 ~~~lC~fGF~~e~R--~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t 106 (511)
T TIGR00806 29 VLYLCFYGFMAQFR--PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVW 106 (511)
T ss_pred HHHHHHHHHHHHhh--chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 34444444444432 234445566666777764 3 4577788889999999999999999999999999999988888
Q ss_pred HHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q psy4866 380 FIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFL 459 (537)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 459 (537)
+++++. .+.....+.-+++|.+-+..+ ....++...+|+++|+++.|+.+....+|.++++++.+.
T Consensus 107 ~L~~fa------------~Sl~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 107 LLLLLG------------TSVWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL 172 (511)
T ss_pred HHHHHH------------HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888774 233445556666777766655 455899999999999999999999999999999999999
Q ss_pred HHHhhccchhhh---HhhHHHHHHHHHHHhhccCCC
Q psy4866 460 MDKHIGMYSNFL---FGGVSSLVCTVYLYYFLLETK 492 (537)
Q Consensus 460 l~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 492 (537)
....||+.... +..+...++.+ ..+++|..+
T Consensus 173 -l~s~gWr~y~~Ln~Isl~s~~~a~~-~a~~LP~~~ 206 (511)
T TIGR00806 173 -LVTLGWISYSTLNIISLVFMTFSVF-LALFLKRPK 206 (511)
T ss_pred -HHhcCchhHHHHHHHHHHHHHHHHH-HHHhCCCCc
Confidence 55668775332 22223333333 335666433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-08 Score=105.03 Aligned_cols=184 Identities=16% Similarity=0.157 Sum_probs=121.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHH
Q psy4866 306 AFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGL 384 (537)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 384 (537)
..+..+.+.........-++.+-++.+.+. +.+++...+.++.+++.++.+++.||.+||+.+.++.++.+++.++.++
T Consensus 38 ~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~al 117 (633)
T TIGR00805 38 LTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSL 117 (633)
T ss_pred HHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhC
Confidence 333344433333444445566655666553 4557777888999999999999999999999999999999999888776
Q ss_pred HHHhhhccccC------------------------------------Cc--ccch-hhHHHHHHHHHHHhhccccchhhh
Q psy4866 385 YYYVTIELQYE------------------------------------IP--YTSW-VPFLSISLLGVFFNLGFGPLFTPL 425 (537)
Q Consensus 385 ~~~~~~~~~~~------------------------------------~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 425 (537)
..........+ .. ...+ ..++.-++.|.+.+ ...++..++
T Consensus 118 phf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~-~~~~~~~~~ 196 (633)
T TIGR00805 118 PHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT-PIFPLGISY 196 (633)
T ss_pred hHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC-cchhcCchh
Confidence 53211000000 00 0112 22334444444443 344566799
Q ss_pred ccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhh----------------------ccchhhhHhhHHHHHHHHH
Q psy4866 426 LSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHI----------------------GMYSNFLFGGVSSLVCTVY 483 (537)
Q Consensus 426 ~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------------------g~~~~~~~~~~~~~~~~~~ 483 (537)
+.|.+|++.|+...|+.+....+|..+++.+.+.+.+.+ +|+..|++.+++.++..+.
T Consensus 197 i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~ 276 (633)
T TIGR00805 197 IDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP 276 (633)
T ss_pred hhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887643 1455577766666665554
Q ss_pred HHhhccCC
Q psy4866 484 LYYFLLET 491 (537)
Q Consensus 484 ~~~~~~~~ 491 (537)
. +++|++
T Consensus 277 l-~~~p~~ 283 (633)
T TIGR00805 277 F-FFFPKA 283 (633)
T ss_pred H-HhCccc
Confidence 3 444443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.2e-08 Score=93.01 Aligned_cols=163 Identities=16% Similarity=0.187 Sum_probs=124.7
Q ss_pred hhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy4866 74 AAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMY 153 (537)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~ 153 (537)
..+.+.++.. .......+-+ +-+.++...|.+.+...+.-++...+..++.+|+|.|+.++++..++++=.+++++
T Consensus 233 ~~~Y~vfdqq-f~~y~~~~f~---~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~ 308 (412)
T PF01306_consen 233 AAIYDVFDQQ-FPIYFASFFQ---SAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGF 308 (412)
T ss_dssp HHHHHHHHHH-HHHHHHHTSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-HHHHHHHHhc---ccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhh
Confidence 3455555554 2222233333 33445567899999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhH-hHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHH
Q psy4866 154 SRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTL-FQISCHLGILYTYVLGSE----LSYMNYLTYSLII 228 (537)
Q Consensus 154 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~ 228 (537)
+++.+.+.+.+.+.|+-.+........++++.+|++-.++...+ .+.+..+|..+.+.+++. +|.+..|++.+.+
T Consensus 309 ~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~i 388 (412)
T PF01306_consen 309 ATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLI 388 (412)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHH
Confidence 99999999999999999999999999999999998876666666 467778888777766655 4888889888887
Q ss_pred HHHHHHH-hhccc
Q psy4866 229 PIIFTVT-FMFMP 240 (537)
Q Consensus 229 ~~~~~~~-~~~~~ 240 (537)
.++..++ .+.++
T Consensus 389 v~~~~li~~f~l~ 401 (412)
T PF01306_consen 389 VLPFTLISAFTLK 401 (412)
T ss_dssp HHHHHHHHHHHS-
T ss_pred HHHHHHHheeeec
Confidence 7665544 44443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.4e-08 Score=93.04 Aligned_cols=151 Identities=19% Similarity=0.283 Sum_probs=123.0
Q ss_pred hhhhhccchhhHHhhhcCCCCCCCCC--ChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q psy4866 78 TGMSFAWSAPVLEELLSKESPIPMSP--NEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR 155 (537)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~ 155 (537)
..++.....+..+.+.. +++.+. .+.++..+.+.++..++.++.|.++||+|||+.+..+.....++.+++++..
T Consensus 14 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 90 (338)
T COG0477 14 LGLDLGLLSPALPLLLS---TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP 90 (338)
T ss_pred HHHhcchHHHHHHHHHH---HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc
Confidence 33566666777777777 666565 4789999999999999999999999999999998888877667777777777
Q ss_pred h--HHHHHHHHHHHHhHhhhhhhhhhhhhhccCCC-cccchhhhHhHH-HHHHHHHHHHHHhhhh------hHHHHHHHH
Q psy4866 156 S--VLGLYVMRTLQGFSMAAIYVISPMYLGEISET-SIRGTIGTLFQI-SCHLGILYTYVLGSEL------SYMNYLTYS 225 (537)
Q Consensus 156 ~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~i~~~l~~~~------~wr~~~~~~ 225 (537)
+ .+.+++.|+++|++.+...+...+++.|++|+ ++|+...+.... ...+|.++++.++..+ +||..|...
T Consensus 91 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (338)
T COG0477 91 NVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLA 170 (338)
T ss_pred cchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 6 89999999999999999999999999999987 678888888887 5778888888666543 688866666
Q ss_pred HHHHHH
Q psy4866 226 LIIPII 231 (537)
Q Consensus 226 ~~~~~~ 231 (537)
......
T Consensus 171 ~~~~~~ 176 (338)
T COG0477 171 ALLGLL 176 (338)
T ss_pred HHHHHH
Confidence 555543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.1e-08 Score=95.18 Aligned_cols=130 Identities=16% Similarity=0.082 Sum_probs=105.2
Q ss_pred CCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhh
Q psy4866 98 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVI 177 (537)
Q Consensus 98 ~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 177 (537)
.+|.++.+.|++.+.+.++..+++++.+++.||+++|+++..+.. .++..++.++.++++..++.-++.|++.+...+.
T Consensus 235 ~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~ 313 (393)
T PRK11195 235 ALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVVP 313 (393)
T ss_pred HcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhh
Confidence 689999999999999999999999999999999999988888754 4455555666778887788888999999888888
Q ss_pred hhhhhhccCCCcc-cchhhhHhHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHH
Q psy4866 178 SPMYLGEISETSI-RGTIGTLFQISCHLGILYTYVLGSEL-----SYMNYLTYSLII 228 (537)
Q Consensus 178 ~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~i~~~l~~~~-----~wr~~~~~~~~~ 228 (537)
..+.+.+..|++. +|++.++.+....+|..++..+.... .++..+...+.+
T Consensus 314 ~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (393)
T PRK11195 314 MNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLL 370 (393)
T ss_pred HHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8888888766554 79999999999999998888777653 355555545544
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.6e-08 Score=89.12 Aligned_cols=129 Identities=15% Similarity=0.193 Sum_probs=99.3
Q ss_pred HHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCccc
Q psy4866 112 IIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIR 191 (537)
Q Consensus 112 ~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r 191 (537)
+..+.-.-|.++.+++.||+|||+++....+++++..++...+.+-..+.+.-|..-++.++.+.+.+.|..|.+|..-|
T Consensus 389 itslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavR 468 (528)
T KOG0253|consen 389 ITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVR 468 (528)
T ss_pred HHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhh
Confidence 34466778999999999999999999999999999988887766443333333333444556677889999999999999
Q ss_pred chhhhHhHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHhhccc
Q psy4866 192 GTIGTLFQISCHLGILYTYVLGSEL--SYMNYLTYSLIIPIIFTVTFMFMP 240 (537)
Q Consensus 192 ~~~~~~~~~~~~~G~~i~~~l~~~~--~wr~~~~~~~~~~~~~~~~~~~~~ 240 (537)
+...|......-+|.++.|+++-.. +-..+..+.+...++..+..+++|
T Consensus 469 atgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffP 519 (528)
T KOG0253|consen 469 ATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFP 519 (528)
T ss_pred hcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeee
Confidence 9999999999999999999998332 223355555666666667777776
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.9e-07 Score=88.72 Aligned_cols=128 Identities=16% Similarity=0.121 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccC
Q psy4866 107 SWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEIS 186 (537)
Q Consensus 107 ~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 186 (537)
+.+.-+-.+...+..+.+.+..+|+..+.=+.+..++..+|.++.++++|.+.-+++-.+.+++.|........+.. .+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 44555555666777777888899887544445556677788899999999999999999999999999888888744 55
Q ss_pred CCcccchhhhHhHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHHHHhhcc
Q psy4866 187 ETSIRGTIGTLFQISCHLGILYTYVLGSE-----LSYMNYLTYSLIIPIIFTVTFMFM 239 (537)
Q Consensus 187 ~~~~r~~~~~~~~~~~~~G~~i~~~l~~~-----~~wr~~~~~~~~~~~~~~~~~~~~ 239 (537)
++ ...+-+..|.+.++++|+..-.. ++-|..+.+...+.++..+.++++
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~ 194 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFL 194 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 54 35677777777777777654322 244777887777776665555443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.2e-08 Score=84.63 Aligned_cols=354 Identities=11% Similarity=0.087 Sum_probs=182.3
Q ss_pred hhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy4866 86 APVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRT 165 (537)
Q Consensus 86 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~ 165 (537)
.|.+-.+-+ .++....++|.+.-+..-...+...+.|.++|+.|||+.-+.-++.+.+++ ++-.++.|-.++++|.
T Consensus 57 gPYvYyLYs---tYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~ 132 (454)
T KOG4332|consen 57 GPYVYYLYS---TYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRV 132 (454)
T ss_pred Cceeeeeeh---hcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhh
Confidence 344444445 788889999998888888888899999999999999997665555554443 3345678999999999
Q ss_pred HHHhHhhhhhhhhhhh-hhccCCCcccchhhhHhHH----HHHHHH----HHHHHHhhhh------hHHHHHHHHHHHHH
Q psy4866 166 LQGFSMAAIYVISPMY-LGEISETSIRGTIGTLFQI----SCHLGI----LYTYVLGSEL------SYMNYLTYSLIIPI 230 (537)
Q Consensus 166 l~G~~~~~~~~~~~~~-i~~~~~~~~r~~~~~~~~~----~~~~G~----~i~~~l~~~~------~wr~~~~~~~~~~~ 230 (537)
+-|++.+..+.+.-++ +.|... +|+.---+... +..+|. +++.+.+..+ |--.+|-..+.+..
T Consensus 133 LGGiaTsLLFSaFEsWliaEHne--kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLa 210 (454)
T KOG4332|consen 133 LGGIATSLLFSAFESWLIAEHNE--KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLA 210 (454)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhh--ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 9999999988877665 566542 33332222211 111222 2333333221 22344544443333
Q ss_pred HHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHHHHH
Q psy4866 231 IFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAV 310 (537)
Q Consensus 231 ~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (537)
+...+.+- .|-..-+++.|.++.+... +...+.+..+. +..+...+..
T Consensus 211 igmAvil~-----~W~ENygdps~~kdlltqf------------------------~gaa~aiaSD~---ki~LLG~iqs 258 (454)
T KOG4332|consen 211 IGMAVILS-----SWSENYGDPSENKDLLTQF------------------------KGAARAIASDE---KIALLGAIQS 258 (454)
T ss_pred HHHHHHHh-----hhhhccCChhhhHHHHHHh------------------------hHhHHHHhcch---HHHHHHHHHH
Confidence 32222111 1111112221211111111 11111111111 1122233333
Q ss_pred HHHhhhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhhHhhhhcccCCc--HHHHHhhHHHHHHHHHHHHHHHh
Q psy4866 311 FRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRR--VLFLVSSAGCSLFSFIAGLYYYV 388 (537)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 388 (537)
.+....+..+..|.|.+-. .......+.++.-+.+..++|+-+..++..|-..| ..+.+.+.+..+.+.+.......
T Consensus 259 LFE~smytFVFLWTPaLsp-n~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~v 337 (454)
T KOG4332|consen 259 LFEGSMYTFVFLWTPALSP-NDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSV 337 (454)
T ss_pred HHhhhhheeeeeecccCCC-CcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333333444445554321 11112445666667777788887777665554333 34444444444444443333222
Q ss_pred hhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q psy4866 389 TIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYS 468 (537)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 468 (537)
.. ........++..+++-...+..+.+++ -+-.+..|.+.|++.+-+...--++...++-+....-....+-+.
T Consensus 338 sP-----~kes~~~s~i~F~~~E~cvGlfwPSim-kmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~ 411 (454)
T KOG4332|consen 338 SP-----SKESPSESLIGFCLFEACVGLFWPSIM-KMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRN 411 (454)
T ss_pred CC-----CcCCchHHHHHHHHHHHHHhhcchHHH-HHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccch
Confidence 21 112334446667777777777665554 677888899988876655544333333322211100001124446
Q ss_pred hhhHhhHHHHHHHHHH
Q psy4866 469 NFLFGGVSSLVCTVYL 484 (537)
Q Consensus 469 ~~~~~~~~~~~~~~~~ 484 (537)
.|-++.++..++.+..
T Consensus 412 mf~icS~~~~~a~i~~ 427 (454)
T KOG4332|consen 412 MFGICSAFLFVASILQ 427 (454)
T ss_pred hhhhhHHHHHHHHHHH
Confidence 6777766666655443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=4e-08 Score=95.31 Aligned_cols=127 Identities=10% Similarity=0.062 Sum_probs=100.3
Q ss_pred hhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhh-hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy4866 86 APVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI-GRKWSLLMTGPITTASWIIAMYSRSVLGLYVMR 164 (537)
Q Consensus 86 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r 164 (537)
...+|.+.+ +.|.+..+.+.+.+.+.++..++.++.|++.||+ +||+.+.++.++.+++.++..+.++..... .-
T Consensus 217 ~~~lp~~~~---~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 292 (355)
T TIGR00896 217 IGWLPAILI---SHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WA 292 (355)
T ss_pred HHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HH
Confidence 345677777 7799999999999999999999999999999999 567777788888888877777665433332 45
Q ss_pred HHHHhHhhhhhhhhhhhhhccCC-CcccchhhhHhHHHHHHHHHHHHHHhhhh
Q psy4866 165 TLQGFSMAAIYVISPMYLGEISE-TSIRGTIGTLFQISCHLGILYTYVLGSEL 216 (537)
Q Consensus 165 ~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~l~~~~ 216 (537)
++.|++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.+.+
T Consensus 293 ~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l 345 (355)
T TIGR00896 293 LVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVL 345 (355)
T ss_pred HHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999988887777765554 45678888888888888888888777654
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-05 Score=77.83 Aligned_cols=126 Identities=5% Similarity=0.047 Sum_probs=92.5
Q ss_pred hHHhhhcCCCCCCC-----CCChhhHHHHHHHHHHhhh-hhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH----h--
Q psy4866 88 VLEELLSKESPIPM-----SPNEGSWVVAIIEIGNYLS-PIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS----R-- 155 (537)
Q Consensus 88 ~~~~~~~~~~~~~~-----s~~~~~~~~s~~~~~~~~~-~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~----~-- 155 (537)
++-.+.+ .+.+ +...+.++-+...+..++. .++.+++++|++|++++-+....+....+++++. +
T Consensus 25 iLR~lKD---~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~ 101 (472)
T TIGR00769 25 ILRDTKD---TLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDL 101 (472)
T ss_pred HHHhhhh---heeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 3445555 5555 3357899999888877776 8999999999999999888777776666665554 0
Q ss_pred -------------------------hHHHHHHHHHHHHhHhhhhhh-hhhhhhhccCCCcccchhhhHhHHHHHHHHHHH
Q psy4866 156 -------------------------SVLGLYVMRTLQGFSMAAIYV-ISPMYLGEISETSIRGTIGTLFQISCHLGILYT 209 (537)
Q Consensus 156 -------------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~ 209 (537)
+.|...+.-+...+-...... .-..+++|.+..++-.|..++++.+.++|.+++
T Consensus 102 ~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~s 181 (472)
T TIGR00769 102 LHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFS 181 (472)
T ss_pred cCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333444444444444444 677889999999999999999999999999999
Q ss_pred HHHhhhh
Q psy4866 210 YVLGSEL 216 (537)
Q Consensus 210 ~~l~~~~ 216 (537)
+.+..++
T Consensus 182 g~~~~~~ 188 (472)
T TIGR00769 182 GRTIKYF 188 (472)
T ss_pred HHHHHHH
Confidence 9887664
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-07 Score=94.20 Aligned_cols=135 Identities=4% Similarity=-0.117 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccC
Q psy4866 317 VQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYE 395 (537)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (537)
......+.|.+.++.+.+. +.+.....+.++..++.++.|++.||+|||+.+..+..+..++.+++.....
T Consensus 42 ~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~-------- 113 (438)
T PRK10133 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-------- 113 (438)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 4566677788766666653 4457778889999999999999999999999999999998888876532110
Q ss_pred CcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4866 396 IPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMD 461 (537)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 461 (537)
.++.+..++..++.+.+.+..... ...++.+..|++.++..+++.+....+|..+++.+.+.+.
T Consensus 114 -a~~~~~ll~~r~l~G~g~g~~~~~-~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 114 -IMNYTLFLVGLFIIAAGLGCLETA-ANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred -cCCHHHHHHHHHHHHHHHHHHHhh-HHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123444555556666666654433 4467777766666666799999999999999998876554
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.3e-08 Score=96.57 Aligned_cols=144 Identities=17% Similarity=0.237 Sum_probs=119.4
Q ss_pred hhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhh
Q psy4866 337 SDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNL 416 (537)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (537)
.+++......+.+++.+.+|++.||+|.|+++..+.++.+++.++..+... ...+..++.=++.|.+.+.
T Consensus 75 k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~----------~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 75 KGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS----------IGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH----------hcchhhHHHHHHhHHHHhH
Confidence 446778889999999999999999999999999999999998888877542 2234445555666666666
Q ss_pred ccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh-hccchhhhHhhHHHHHHHHHHHhhccCC
Q psy4866 417 GFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKH-IGMYSNFLFGGVSSLVCTVYLYYFLLET 491 (537)
Q Consensus 417 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (537)
.+. ....+..+-.|+++|++..++.....++|.+++-++.|.+.+. .||...|++.+++.++..++.+.+..+.
T Consensus 145 ~~p-a~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~ 219 (466)
T KOG2532|consen 145 LFP-AIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDS 219 (466)
T ss_pred HHh-hhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 554 4558999999999999999999999999999999999999998 9999999999999988887766665543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.9e-07 Score=91.88 Aligned_cols=114 Identities=10% Similarity=0.088 Sum_probs=90.0
Q ss_pred CCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHhHhhhhhh
Q psy4866 102 SPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMY-----SRSVLGLYVMRTLQGFSMAAIYV 176 (537)
Q Consensus 102 s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~ 176 (537)
+....+++.+...++..++.+++++++||+|+|+.+.++.++.+++.+...+ .++.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777899999999999999999999999888877766655433 34567777788899999999999
Q ss_pred hhhhhhhccCCC-------cccchhhhHhHHHHHHHHHHHHHHhhh
Q psy4866 177 ISPMYLGEISET-------SIRGTIGTLFQISCHLGILYTYVLGSE 215 (537)
Q Consensus 177 ~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~i~~~l~~~ 215 (537)
...++++|..+. ++.|..++......-+|..+++.+.+.
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~ 389 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGV 389 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999652 334668888888888888887766654
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-07 Score=93.68 Aligned_cols=133 Identities=14% Similarity=0.158 Sum_probs=109.3
Q ss_pred hhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHh--hH
Q psy4866 80 MSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR--SV 157 (537)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~--~~ 157 (537)
..........+.+.++ .++.+ ...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++..+.+ |.
T Consensus 239 ~~~~~~~~~~~y~~~~--vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (428)
T PF13347_consen 239 LAFALMNTFLPYYFTY--VLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSP 315 (428)
T ss_pred hhhhhhhhHHHHHHHH--HhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhH
Confidence 3344444455555552 34433 6778888999999999999999999999999999999999999999988886 99
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhhhccCCC-------cccchhhhHhHHHHHHHHHHHHHHhhh
Q psy4866 158 LGLYVMRTLQGFSMAAIYVISPMYLGEISET-------SIRGTIGTLFQISCHLGILYTYVLGSE 215 (537)
Q Consensus 158 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~i~~~l~~~ 215 (537)
+.+++.-++.|++.+..++...++++|..+. ++.|...+......-+|..+++.+.+.
T Consensus 316 ~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~ 380 (428)
T PF13347_consen 316 WLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGL 380 (428)
T ss_pred HHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999998873 334888888888888888888776654
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.6e-08 Score=98.46 Aligned_cols=139 Identities=18% Similarity=0.148 Sum_probs=107.9
Q ss_pred hhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhh
Q psy4866 337 SDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNL 416 (537)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (537)
......++.++..+|.++.|.++||+|||++++.+.++..++.+..++. .+.+...+.=++.+++. .
T Consensus 120 ~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a------------~~~~~~~~~Rfl~G~~~-~ 186 (521)
T KOG0255|consen 120 VALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA------------PNYWMFLIFRFLSGFFG-S 186 (521)
T ss_pred HHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh------------CcHHHHHHHHHHHHhhc-c
Confidence 3366777889999999999999999999999999999999888777663 34444444445555554 4
Q ss_pred ccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhHHHHHHHHHHHhhccCCC
Q psy4866 417 GFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFLLETK 492 (537)
Q Consensus 417 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (537)
+...+.+.+..|.+++++|+.+..+ ......++.+++...+++.. +|++.+++.....++..++ +++.+|.+
T Consensus 187 ~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~ 258 (521)
T KOG0255|consen 187 GPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESP 258 (521)
T ss_pred chhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence 4455677999999999999999999 88888899999999988887 7888888777777666555 34444543
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.6e-07 Score=91.30 Aligned_cols=144 Identities=17% Similarity=0.224 Sum_probs=111.4
Q ss_pred hhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhh
Q psy4866 337 SDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNL 416 (537)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (537)
-+....++.++.+++.+.++.+.||++-.+.+....++.++..++-... ++.+..++.-++.|.+-+.
T Consensus 83 l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~------------~s~~~~ialr~llGl~es~ 150 (495)
T KOG2533|consen 83 LGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV------------HSFPGLIALRFLLGLFESG 150 (495)
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH------------hhhHHHHHHHHHHHHHhcc
Confidence 3366778899999999999999999995555544444433333222221 3455566667778888777
Q ss_pred ccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH------HhhccchhhhHhhHHHHHHHHHHHhhccC
Q psy4866 417 GFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMD------KHIGMYSNFLFGGVSSLVCTVYLYYFLLE 490 (537)
Q Consensus 417 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (537)
++++. ..++...+.+++|+..+|+.+...++|+++++.+...+. ...||++.|++-+++.++..+++++++|+
T Consensus 151 ~wP~~-~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 151 GWPGV-VAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred cchHH-HHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence 77554 489999999999999999999999999999999988764 34689999999999999999988888887
Q ss_pred CCC
Q psy4866 491 TKG 493 (537)
Q Consensus 491 ~~~ 493 (537)
...
T Consensus 230 ~P~ 232 (495)
T KOG2533|consen 230 NPS 232 (495)
T ss_pred Chh
Confidence 554
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.4e-06 Score=74.94 Aligned_cols=136 Identities=14% Similarity=0.094 Sum_probs=91.2
Q ss_pred HHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhh-----hhhhhHHHHH-HHHHHH
Q psy4866 72 CIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVN-----RIGRKWSLLM-TGPITT 145 (537)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~d-----r~Grr~~l~~-~~~l~~ 145 (537)
.+.....|.-.+... .+|.+.+ .-|.|.++.+...-++. -..--++|.++.| |+||||.-++ ...+.+
T Consensus 37 l~LYllQGiP~GL~~-~iP~lL~---ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG 110 (510)
T KOG3574|consen 37 LFLYLLQGIPLGLIG-AIPLLLQ---AKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLG 110 (510)
T ss_pred HHHHHHcCCchhHhh-hhHHHhc---CCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehHHHHH
Confidence 344667888888888 8899998 78888887665433321 1234568889999 9999875333 222222
Q ss_pred HHHHHHHH-----------HhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHh
Q psy4866 146 ASWIIAMY-----------SRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLG 213 (537)
Q Consensus 146 ~~~~~~~~-----------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~ 213 (537)
....+.+. .++...+....++.-+.++.--.+.-.+.-.+..+++-|.+......+...|.+++..+-
T Consensus 111 ~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 111 LFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred HHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence 22222222 123333444556666777777777778888888889999999999999999998886553
|
|
| >KOG3810|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.7e-06 Score=78.34 Aligned_cols=360 Identities=15% Similarity=0.138 Sum_probs=212.4
Q ss_pred CCCCCCChhh-HHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhh
Q psy4866 98 PIPMSPNEGS-WVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYV 176 (537)
Q Consensus 98 ~~~~s~~~~~-~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 176 (537)
+.+++..|+. -+.-...-.+.+.-.+.=.+.|-.-.|+++++-.+.......+.-+.++.+.+=+.-++-|...+ ...
T Consensus 35 ~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEI 113 (433)
T KOG3810|consen 35 DKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEI 113 (433)
T ss_pred CCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHH
Confidence 5566655542 22233334455555666678999999999999888888888888999999999999999999865 457
Q ss_pred hhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHHHHHhhcccCChHHHHHhC
Q psy4866 177 ISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL------SYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKN 250 (537)
Q Consensus 177 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~------~wr~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~ 250 (537)
+.++++-+.++++++.++.+...+..-.|...|..++..+ +....-.+......+..+..+++|..+|-+.-+.
T Consensus 114 AYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~ 193 (433)
T KOG3810|consen 114 AYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHR 193 (433)
T ss_pred hhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhc
Confidence 7899999999999999999999888888888888777663 3444444444444455666677776654443333
Q ss_pred CHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q psy4866 251 QEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS 330 (537)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (537)
+.++.. .....+.+ .+.+.....+.. ...-...+.+..+ ++.++...++.....++++-+..|...+.+.
T Consensus 194 ~~~~~~--v~~~e~~~---~~~~~~~~l~~~-~~~l~~~l~~~y~----np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~ 263 (433)
T KOG3810|consen 194 LEDKIS--VGDLEEMN---PQASYMSYLRGA-FVLLWRDLQECYS----NPRLLKWSLWWALASCGYYQVTNYTQILWKE 263 (433)
T ss_pred ccccce--eccchhcC---ccchhhHHHHHH-HHHHHHHHHHHhc----CchhhhhHHHHHHhhchhHHHHHHHHHHHHh
Confidence 322110 00000000 000000000000 0000112222222 2234444555555666788888888888777
Q ss_pred cCCCCCh---hHHHHHHHHHHHHHhhhHhhhhcccCCcHH--HHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHH
Q psy4866 331 SETFLPS---DYISILFAIILLVSIFPSTYYIDRAGRRVL--FLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFL 405 (537)
Q Consensus 331 ~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (537)
....... +..=.+..+.++++.+..|++.-.+.|..- +.++.+..+...+.+.. ..+.|+...
T Consensus 264 ~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~------------t~~Iw~~Ya 331 (433)
T KOG3810|consen 264 VAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQ------------TQHIWVCYA 331 (433)
T ss_pred hCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhc------------ccceehhhh
Confidence 6432111 133344566777888888988666655532 23333333322222221 345677777
Q ss_pred HHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc-----------cchhhhHhh
Q psy4866 406 SISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG-----------MYSNFLFGG 474 (537)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-----------~~~~~~~~~ 474 (537)
...++...+.+.. ++....+++....+.-|..+|+..++.-+-..+...+. .|..| +..-|.+.+
T Consensus 332 ~yvlfr~~y~l~i-tiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~iV---vd~~g~~L~ir~Q~~~Y~~Yf~v~~ 407 (433)
T KOG3810|consen 332 GYVLFRVIYQLTI-TIATFQIARNLSSELFGLVFGINTFVALILQSILTLIV---VDDRGLGLDIRTQFVVYSSYFIVLG 407 (433)
T ss_pred hHHHHHhhHhhhh-hHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEEE---EcccccCCCcceeEEEEeehHHHHH
Confidence 7777777776654 34445555656777789999988877655554444332 23222 222366666
Q ss_pred HHHHHHHHHH
Q psy4866 475 VSSLVCTVYL 484 (537)
Q Consensus 475 ~~~~~~~~~~ 484 (537)
++.+++....
T Consensus 408 ~i~~~~~~~~ 417 (433)
T KOG3810|consen 408 VIFLIGFGIE 417 (433)
T ss_pred HHHHHHHHHH
Confidence 6666665543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.3e-06 Score=85.69 Aligned_cols=111 Identities=9% Similarity=0.076 Sum_probs=86.0
Q ss_pred hhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHhHhhhhhhhhhhhh
Q psy4866 105 EGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMY--SRSVLGLYVMRTLQGFSMAAIYVISPMYL 182 (537)
Q Consensus 105 ~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 182 (537)
..+.+.....++..++.+++++++||+|+|+.+.++.++.++..+...+ .++.+.+++..++.|++.+...+...+++
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ 344 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF 344 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777888889999999999999999999888766654443333 34777788888999999999999999999
Q ss_pred hccCCC-------cccchhhhHhHHHHHHHHHHHHHHhhh
Q psy4866 183 GEISET-------SIRGTIGTLFQISCHLGILYTYVLGSE 215 (537)
Q Consensus 183 ~~~~~~-------~~r~~~~~~~~~~~~~G~~i~~~l~~~ 215 (537)
+|..+. ++.|...+.......+|..+++.+++.
T Consensus 345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ 384 (444)
T PRK09669 345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGW 384 (444)
T ss_pred HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998852 223667788887888888888777654
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00012 Score=71.11 Aligned_cols=128 Identities=16% Similarity=0.066 Sum_probs=77.0
Q ss_pred HHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCccc
Q psy4866 321 IAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYT 399 (537)
Q Consensus 321 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (537)
...+..|+...|.+. ..+..-....+.++.++++..++.+|+|..+.-.++......++.+.....+... .+
T Consensus 278 ~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~-------~~ 350 (432)
T PF06963_consen 278 GGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPG-------SP 350 (432)
T ss_pred cHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCC-------CC
Confidence 334455666667752 2234555567778899999999999999888877776665555444433332222 11
Q ss_pred -chhhH----HHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHH
Q psy4866 400 -SWVPF----LSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKL 456 (537)
Q Consensus 400 -~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 456 (537)
..... ..+.+--.+. -++-....-++.|..|+++||+..|+-+...++...+.-.+
T Consensus 351 ~~~~s~~~l~~gi~~SR~GL-W~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 351 FSSISAYLLLGGIALSRIGL-WSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred chhhHHHHHHHHHHHHHHHH-HhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1111111111 12222234678899999999999999999888877665443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-07 Score=67.56 Aligned_cols=80 Identities=15% Similarity=0.094 Sum_probs=73.5
Q ss_pred hhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHH
Q psy4866 79 GMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVL 158 (537)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~ 158 (537)
|+....++|++|.+++ |.++|.++.|++.+..++|+.+|.+...++.++..+++.+..++++..+..+.+++.++++
T Consensus 5 GigRFayTplLP~M~~---~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~ 81 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQA---DGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFW 81 (85)
T ss_pred hhHHHHHHhHhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 4555678999999999 9999999999999999999999999999999999999999999999999999999999877
Q ss_pred HHH
Q psy4866 159 GLY 161 (537)
Q Consensus 159 ~l~ 161 (537)
...
T Consensus 82 ~w~ 84 (85)
T PF06779_consen 82 LWS 84 (85)
T ss_pred HHh
Confidence 653
|
Note that many members are hypothetical proteins. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.5e-07 Score=87.70 Aligned_cols=139 Identities=14% Similarity=0.153 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHhhhHhhhhccc-CCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhc
Q psy4866 339 YISILFAIILLVSIFPSTYYIDRA-GRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLG 417 (537)
Q Consensus 339 ~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (537)
.....+....-+..+++||++||+ |+|+.+..+.++..++.++++... ........+.+.++..+.+.
T Consensus 65 ~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~----------~~~~~gl~i~L~~I~iG~Gl- 133 (498)
T COG3104 65 GLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS----------VSGPGGLYIGLALIIVGTGL- 133 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc----------cccccHHHHHHHHHHhcccc-
Confidence 444455555557778899999995 999999999999999999887631 01234455555666655544
Q ss_pred cccchhhhccccCCcc--ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhHHHHHHHHHHHhhc
Q psy4866 418 FGPLFTPLLSEYFSSN--MKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFL 488 (537)
Q Consensus 418 ~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 488 (537)
+-+...+++.|++|++ +|-.++++.++..++|+.++|.+.+++.++.||...|...++-..++.+..++..
T Consensus 134 ~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 134 FKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred ccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4445558999998764 4677888899999999999999999999999999999988888888877665443
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=98.56 E-value=1e-06 Score=89.76 Aligned_cols=140 Identities=14% Similarity=0.107 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhc
Q psy4866 338 DYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLG 417 (537)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (537)
++......++..++.++.|+++|++|||+.++.+.+...++.++.+.. .+.....+.=++.+.+.+..
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a------------~~~~~l~~GR~l~G~g~G~~ 159 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA------------PSWYQLIVGRILTGLGVGGA 159 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHhccchhhh
Confidence 577888899999999999999999999999999999999999888874 34455666666777766665
Q ss_pred cccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhh--ccchhhhHhhHHHHHHHHHHHhhccCCC
Q psy4866 418 FGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHI--GMYSNFLFGGVSSLVCTVYLYYFLLETK 492 (537)
Q Consensus 418 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (537)
.... ..+.+|..|++.||...+..+....+|..++ .+.+....+. +|+..+.+..+.+++..+. .++.||..
T Consensus 160 ~~~~-piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp 233 (513)
T KOG0254|consen 160 SVLA-PVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESP 233 (513)
T ss_pred hhcc-hhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCCh
Confidence 5444 4899999999999999999999988887777 5566665543 7887776666666666655 56677643
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.8e-07 Score=89.13 Aligned_cols=119 Identities=12% Similarity=0.068 Sum_probs=104.5
Q ss_pred CCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHH
Q psy4866 98 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMY----------SRSVLGLYVMRTLQ 167 (537)
Q Consensus 98 ~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~----------~~~~~~l~~~r~l~ 167 (537)
.+|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++.+.... .++.+.++..-++.
T Consensus 282 ~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~ 361 (468)
T TIGR00788 282 CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIA 361 (468)
T ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHH
Confidence 78999999999999999999999999999999999999999999999888765431 13444556678899
Q ss_pred HhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh
Q psy4866 168 GFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL 216 (537)
Q Consensus 168 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~ 216 (537)
+++.+..+.....++.+.+|++++|...++.+...++|..+++.+++.+
T Consensus 362 ~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l 410 (468)
T TIGR00788 362 EVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLL 410 (468)
T ss_pred HHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999877653
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-07 Score=91.30 Aligned_cols=162 Identities=17% Similarity=0.120 Sum_probs=130.1
Q ss_pred hhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy4866 75 AFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS 154 (537)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~ 154 (537)
.++.|...+.....+--..+ |.+-.+.-.|.....-..|-.+.-++.+++..++|+-+++.+++.++++=.+..++.
T Consensus 380 av~mG~g~~lv~tFLfWHle---d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L 456 (618)
T KOG3762|consen 380 AVVMGAGVGLVFTFLFWHLE---DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL 456 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHh---hcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh
Confidence 33444445544444445556 788788888888888888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHH-----HHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy4866 155 RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQI-----SCHLGILYTYVLGSELSYMNYLTYSLIIP 229 (537)
Q Consensus 155 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-----~~~~G~~i~~~l~~~~~wr~~~~~~~~~~ 229 (537)
+|.|+.+...+++|+..+..+....+|++...||+-|..+.++.+. +-++|.+||..+...++-|..|.+.++.+
T Consensus 457 ~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAc 536 (618)
T KOG3762|consen 457 QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIAC 536 (618)
T ss_pred cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888644 33455555554444568889999988888
Q ss_pred HHHHHHhhcc
Q psy4866 230 IIFTVTFMFM 239 (537)
Q Consensus 230 ~~~~~~~~~~ 239 (537)
++.++....+
T Consensus 537 l~~l~~~~~i 546 (618)
T KOG3762|consen 537 LVTLALFISI 546 (618)
T ss_pred HHHHHHHHHh
Confidence 7766554443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.7e-06 Score=78.13 Aligned_cols=166 Identities=11% Similarity=0.090 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhh-hhHHHHHH
Q psy4866 62 FLFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIG-RKWSLLMT 140 (537)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G-rr~~l~~~ 140 (537)
...|.+.+...+-.+..... ..=+|.+.. |-|+|..+.|++.+...+.....++....+.+|.. +|+..+..
T Consensus 208 ~~aW~vtLfmGlqS~~~Y~~----~~WLP~ili---~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~ 280 (395)
T COG2807 208 PLAWQVTLFMGLQSLLYYIV----IGWLPAILI---DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLA 280 (395)
T ss_pred chhHHHHHHHHhhHHHHHHH----HHHHHHHHH---HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 34555555554444433333 333678888 89999999999999999999999999999999754 78888888
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHH---HHHHHhhhh-
Q psy4866 141 GPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGIL---YTYVLGSEL- 216 (537)
Q Consensus 141 ~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~---i~~~l~~~~- 216 (537)
..++.+|.+.+.+.+.-..++. -++.|+|.|..++.+..++.+..++.++. -.+..+..++|.+ +||.+.+++
T Consensus 281 ~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~A--a~LSgmaQg~GYllAa~GP~l~G~lh 357 (395)
T COG2807 281 LLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIA--AALSGMAQGVGYLLAAFGPWLFGFLH 357 (395)
T ss_pred HHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHH--HHHHHHhhhhhHHHHhhhhhhHhHHH
Confidence 8888888888888775444433 49999999999999999999988655432 2333445555554 467777664
Q ss_pred ----hHHHHHHHHHHHHHHHHHHhh
Q psy4866 217 ----SYMNYLTYSLIIPIIFTVTFM 237 (537)
Q Consensus 217 ----~wr~~~~~~~~~~~~~~~~~~ 237 (537)
+|+..+...+...++..+.-+
T Consensus 358 Da~gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 358 DATGSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred HhcCChHHHHHHHHHHHHHHHHHHh
Confidence 799888887777666554433
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.7e-06 Score=80.14 Aligned_cols=127 Identities=11% Similarity=0.117 Sum_probs=100.0
Q ss_pred hhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHh--hHHHHHHH
Q psy4866 86 APVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR--SVLGLYVM 163 (537)
Q Consensus 86 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~--~~~~l~~~ 163 (537)
+.+...+.+. -+|.++.+..+.......+..++.+++.++++|+|+|+++.++.++.+++.++.-+.+ +.+.+++.
T Consensus 256 ~s~~~yy~~y--~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~ 333 (467)
T COG2211 256 GSIMVYYVTY--VLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVA 333 (467)
T ss_pred hhhhheeEEE--EcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHH
Confidence 3344444442 4565666677888888888888899999999999999999999999999999988877 78888999
Q ss_pred HHHHHhHhhhhhhhhhhhhhccCCC-------cccchhhhHhHHHHHHHHHHHHHHhh
Q psy4866 164 RTLQGFSMAAIYVISPMYLGEISET-------SIRGTIGTLFQISCHLGILYTYVLGS 214 (537)
Q Consensus 164 r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~i~~~l~~ 214 (537)
.++.++|.+...+...++++|..+- +.-|...+......=+|..++..+.+
T Consensus 334 ~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g 391 (467)
T COG2211 334 LIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPG 391 (467)
T ss_pred HHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987652 22367777777666667666654443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.7e-06 Score=77.22 Aligned_cols=147 Identities=13% Similarity=-0.020 Sum_probs=96.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHH
Q psy4866 309 AVFRAFTGVQSIIAYANTIFASSETFLP-SDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYY 387 (537)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (537)
+.....+..+.+..|.|.+.+..+.++. .........++..+ .++.|.+.|++|.+.++.++.+...++...+.....
T Consensus 10 ~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~ 88 (250)
T PF06813_consen 10 WVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVS 88 (250)
T ss_pred HHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444567888999999888887632 22445555566655 578899999999999999999999998887766542
Q ss_pred hhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4866 388 VTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKH 463 (537)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 463 (537)
... +..+.|...+..++.+.+. ..+.........+.+|. +||++.|+.-....+++++-..+...+.+.
T Consensus 89 ~~i-----~~~~~~~~~~~~~l~~~s~-~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 89 GRI-----PSLPVWLMCLFLFLGGNSS-CWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred Ccc-----CccchHHHHHHHHHHcccH-HHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 221 1112222222222222221 22223333445577885 699999999999999999988887776654
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.3e-06 Score=75.34 Aligned_cols=144 Identities=10% Similarity=0.111 Sum_probs=106.6
Q ss_pred hhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHh
Q psy4866 91 ELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITT-ASWIIAMYSRSVLGLYVMRTLQGF 169 (537)
Q Consensus 91 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~-~~~~~~~~~~~~~~l~~~r~l~G~ 169 (537)
.+++ .+|+|+...+.+.+.-..-.++.+++.|.++|++|++.+.+.+..+.. ++-....+ +++.=..+..+.|+
T Consensus 290 fF~~---rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGL 364 (459)
T KOG4686|consen 290 FFQK---RFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGL 364 (459)
T ss_pred HHHH---hhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhh
Confidence 4556 899999999999999888899999999999999999987776644443 33333333 33334567788888
Q ss_pred HhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh-------hHHH-HHHHHHHHHHHHHHHhhcc
Q psy4866 170 SMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL-------SYMN-YLTYSLIIPIIFTVTFMFM 239 (537)
Q Consensus 170 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~-------~wr~-~~~~~~~~~~~~~~~~~~~ 239 (537)
..+.........++-..|+++.|.+.+..+...++|..+.+++++.+ .|-- .|...+.+++....+.+.+
T Consensus 365 sysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 365 SYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred hHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 87777666777888889999999999999999999999999998763 3433 4444444555544444443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.3e-09 Score=103.67 Aligned_cols=143 Identities=17% Similarity=0.240 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhcc
Q psy4866 339 YISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGF 418 (537)
Q Consensus 339 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (537)
.......++.++|.++.|+++||+|||+.+..+..+..++.++..+... ..+.+...+.-++.|.+.+...
T Consensus 50 ~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~---------~~~~~~~~~~R~~~G~~~g~~~ 120 (451)
T PF00083_consen 50 LLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPS---------YNNFWMLLIGRFLIGFGIGGAY 120 (451)
T ss_pred HHHHHHHhhhccccccccccccccccccccccccccccccccccccccc---------cccccccccccccccccccccc
Confidence 5566778899999999999999999999999999998888877766310 0134455555566666665544
Q ss_pred ccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh---hccchhhhHhhHHHHHHHHHHHhhccCCC
Q psy4866 419 GPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKH---IGMYSNFLFGGVSSLVCTVYLYYFLLETK 492 (537)
Q Consensus 419 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (537)
+....++.|..|++.|+...++.+....+|..++..+.-.+.+. .+|+..+.+..+..++..+ ...+.||..
T Consensus 121 -~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~-~~~~~pESP 195 (451)
T PF00083_consen 121 -VVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLL-LRFFLPESP 195 (451)
T ss_pred -cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 44558999999999999999999988888877776654433222 2477666665555554433 335667653
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.43 E-value=1e-05 Score=66.52 Aligned_cols=128 Identities=20% Similarity=0.291 Sum_probs=99.1
Q ss_pred hhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy4866 86 APVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRT 165 (537)
Q Consensus 86 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~ 165 (537)
.+++..+.++. .-++++..--.-.++.+....+++++.+.+.+++|.|+.+++|.+.+.+-.+ .-+-++.+.++.+-.
T Consensus 20 ~svi~s~~~~~-~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~-~~~~~~~~~l~~~s~ 97 (156)
T PF05978_consen 20 ESVIHSVHERN-PSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIA-SFFYPNSYTLYPASA 97 (156)
T ss_pred HHHHHHHhhcC-cccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHH
Confidence 44444544411 1233443334445666777788889999999999999999999999986543 446678889999999
Q ss_pred HHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh
Q psy4866 166 LQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE 215 (537)
Q Consensus 166 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~ 215 (537)
+.|++.+..++....++.+..++++|++..+++-.....+.++|.++...
T Consensus 98 l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 98 LLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888888877766543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.4e-05 Score=74.71 Aligned_cols=134 Identities=7% Similarity=-0.077 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhcCCC-CChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCc
Q psy4866 319 SIIAYANTIFASSETF-LPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIP 397 (537)
Q Consensus 319 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (537)
......|.+.+....+ .+++.....+..+..+..+..+++.+|+|.|+-++.+..++++++.++.-... .
T Consensus 31 l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~---------~ 101 (422)
T COG0738 31 LNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS---------S 101 (422)
T ss_pred cchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh---------h
Confidence 3344556665555555 35667778888899999999999999999999999999999999888753321 1
Q ss_pred ccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4866 398 YTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 462 (537)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 462 (537)
......+..+++.+.+.+..- +..+.++..+.+++....-+.+...+..+|.+++|.+.+++..
T Consensus 102 ~~y~~FL~~lFila~Gi~~Le-taaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 102 KSYGFFLVALFILASGIGLLE-TAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hhHHHHHHHHHHHHhhhHHHH-hccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 223344455555555555433 3345788888888878889999999999999999999999887
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.8e-05 Score=72.43 Aligned_cols=138 Identities=16% Similarity=0.153 Sum_probs=113.3
Q ss_pred CCCCCCChhhHHHHHHHHHHhhhhhhhHHhhh-hhhhhHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHhHhhh
Q psy4866 98 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVN-RIGRKWSLLMTGPITTASWIIAMY---SRSVLGLYVMRTLQGFSMAA 173 (537)
Q Consensus 98 ~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~d-r~Grr~~l~~~~~l~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~ 173 (537)
-||++..|...+......|..++....|++.. |.+.|++-.+++.+.+++..+..+ ..+.+.+...-++.|++.|.
T Consensus 238 Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~ 317 (403)
T PF03209_consen 238 VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGL 317 (403)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhH
Confidence 78999999999999999999999999999888 678888888888887777665444 45788999999999999999
Q ss_pred hhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh--------------hHHHHHHHHHHHHHHHHHH
Q psy4866 174 IYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL--------------SYMNYLTYSLIIPIIFTVT 235 (537)
Q Consensus 174 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~--------------~wr~~~~~~~~~~~~~~~~ 235 (537)
......+...+...+++.|.+++.|+....++..++..+++.. ++-..|.+-++..++.+.+
T Consensus 318 f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 318 FTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL 393 (403)
T ss_pred HHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888887777776552 3555666655555444433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.8e-05 Score=76.28 Aligned_cols=113 Identities=12% Similarity=0.092 Sum_probs=75.0
Q ss_pred CChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhHhhhhhhhhhh
Q psy4866 103 PNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR--SVLGLYVMRTLQGFSMAAIYVISPM 180 (537)
Q Consensus 103 ~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~ 180 (537)
....+++.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.+ +...+++.-++.|++.+...+...+
T Consensus 262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~ 341 (460)
T PRK11462 262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV 341 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777888899999999999999999999987765554444334333332 2334445556778887777777777
Q ss_pred hhhccCC-------CcccchhhhHhHHHHHHHHHHHHHHhhh
Q psy4866 181 YLGEISE-------TSIRGTIGTLFQISCHLGILYTYVLGSE 215 (537)
Q Consensus 181 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~i~~~l~~~ 215 (537)
++.|..+ +++.|...+......-+|..+++.+++.
T Consensus 342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~ 383 (460)
T PRK11462 342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGW 383 (460)
T ss_pred HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887765 2223555566666666666666655543
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=98.32 E-value=2e-06 Score=81.18 Aligned_cols=172 Identities=14% Similarity=0.045 Sum_probs=125.0
Q ss_pred HHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhH--------HHH-HHHHHHhhhhhhhHHhhhhhhhhHH
Q psy4866 66 FLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSW--------VVA-IIEIGNYLSPIPAGMLVNRIGRKWS 136 (537)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~--------~~s-~~~~~~~~~~~~~G~l~dr~Grr~~ 136 (537)
.-++..+...|+......-.+.....+.+ ++++.+.+... ... +...++..|..+...+.|+.|||++
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~---~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~i 380 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS---AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYI 380 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHH---hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHH
Confidence 56667777777777666666666777777 67766554333 111 2223444577788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhH--------HHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHH
Q psy4866 137 LLMTGPITTASWIIAMYSRSV--------LGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILY 208 (537)
Q Consensus 137 l~~~~~l~~~~~~~~~~~~~~--------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i 208 (537)
.+.+.+++.+..+..+...|. ....+..++.-+| .......+-+|.+|.+-|+..-++..+..-+|.++
T Consensus 381 q~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~FParvR~t~hGIsAA~GK~GAiv 457 (538)
T KOG0252|consen 381 QLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIFPARVRSTCHGISAASGKAGAIV 457 (538)
T ss_pred HHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhchHHHhhhhhhHHHHhccchHHH
Confidence 999999999998888887661 1222233333333 23344556789999999999999999999999998
Q ss_pred HHHHhhh---------hhHHHHHHHHHHHHHHHHHHhhcccCCh
Q psy4866 209 TYVLGSE---------LSYMNYLTYSLIIPIIFTVTFMFMPESP 243 (537)
Q Consensus 209 ~~~l~~~---------~~wr~~~~~~~~~~~~~~~~~~~~~esp 243 (537)
+...-.. .+-|+.+++.+...++..+..+++|||-
T Consensus 458 g~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk 501 (538)
T KOG0252|consen 458 GAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETK 501 (538)
T ss_pred HHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeeccc
Confidence 8765533 3678999999999999999999999883
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0027 Score=63.10 Aligned_cols=115 Identities=11% Similarity=0.087 Sum_probs=77.6
Q ss_pred CCChhhHHHHHHHH-HHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH--h-----------------------
Q psy4866 102 SPNEGSWVVAIIEI-GNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS--R----------------------- 155 (537)
Q Consensus 102 s~~~~~~~~s~~~~-~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~--~----------------------- 155 (537)
+...+.++-....+ ...+...+..++++|++|.+++-+....+.....++++. |
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 44556666554444 445567788999999999998877766666655555542 0
Q ss_pred ------hHHHHHHHHHHHHhHhhhhhh-hhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh
Q psy4866 156 ------SVLGLYVMRTLQGFSMAAIYV-ISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL 216 (537)
Q Consensus 156 ------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~ 216 (537)
+.|.+.+.-++.-+-...... .-..+..|.++.+|-.+..++++.+.++|.++++.+...+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333333333333333333 4577889999999999999999999999999988776554
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0053 Score=59.39 Aligned_cols=115 Identities=10% Similarity=0.063 Sum_probs=83.1
Q ss_pred CCChhhHHHHHHHH-HHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHh-------------------------
Q psy4866 102 SPNEGSWVVAIIEI-GNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR------------------------- 155 (537)
Q Consensus 102 s~~~~~~~~s~~~~-~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~------------------------- 155 (537)
++..+.++-+..-+ +..+..++.+++.+++-|.+++-+-+..+....+++++.-
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 45567788777777 6788889999999999999998888777777777776531
Q ss_pred -------hHHHHHHHHHHHHhHhhhhhh-hhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh
Q psy4866 156 -------SVLGLYVMRTLQGFSMAAIYV-ISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL 216 (537)
Q Consensus 156 -------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~ 216 (537)
+.|...+.-++.-+=.+.... .-.....|.+..+|-.|..++++.+.+++.++++.+..++
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~ 207 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWL 207 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 113333333333332233322 4456678999889999999999999999999998887665
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.1e-05 Score=77.36 Aligned_cols=136 Identities=21% Similarity=0.211 Sum_probs=107.1
Q ss_pred HHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchh
Q psy4866 344 FAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFT 423 (537)
Q Consensus 344 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (537)
.++..++.++..|.++|++|||..+......+.+..+.+.+. . |+.++...+.+. +.. .....+
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~-------------~-~~~~~~~~l~g~-~~~-~~s~~~ 134 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ-------------G-YWFFLLLGLSGG-FSA-IFSVGF 134 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH-------------H-HHHhhhcccccc-hhh-hhhhhh
Confidence 367788889999999999999999988888777776666552 1 222222222222 222 334456
Q ss_pred hhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhHHHHHHHHHHHhhccCCCCCC
Q psy4866 424 PLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFLLETKGKT 495 (537)
Q Consensus 424 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (537)
+++++....+.|....|+.+.....+..++|.+.+.+....|+...|.+..+..++..+....++||+..++
T Consensus 135 a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~ 206 (463)
T KOG2816|consen 135 AYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEK 206 (463)
T ss_pred hheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcc
Confidence 899999999999999999999999999999999999999999999999999999999888888888876544
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0001 Score=72.40 Aligned_cols=115 Identities=14% Similarity=0.029 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhhhHhhhhcccCCc-HHHHHhhHHHHHHHHHHHHHHHhhhccccC-CcccchhhHHHHHHHHHHHhh
Q psy4866 339 YISILFAIILLVSIFPSTYYIDRAGRR-VLFLVSSAGCSLFSFIAGLYYYVTIELQYE-IPYTSWVPFLSISLLGVFFNL 416 (537)
Q Consensus 339 ~~~~~~~~~~~~~~~~~g~l~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (537)
.....+.++..+|+.+..+.. +-++| +.+.+..+.=.+..-++.+...... .... .-.+.+..++..++++...+.
T Consensus 311 i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~-~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 311 ICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQR-SRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCcc-ccCCeeecccHHHHHHHHHHHHhhhH
Confidence 556667889999998665432 11222 1232222222222222222111100 0000 002345556666666666655
Q ss_pred ccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHH
Q psy4866 417 GFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKL 456 (537)
Q Consensus 417 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 456 (537)
. .+....+..+..++++|..+..+...+..+|-++|..+
T Consensus 389 ~-~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 389 L-GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred H-HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 34455778888888888888888888888888777765
|
|
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00029 Score=71.45 Aligned_cols=151 Identities=13% Similarity=0.091 Sum_probs=116.1
Q ss_pred ccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhh-hhhhHHHHHHHHHHHHHHHHHHHHhhH----
Q psy4866 83 AWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR-IGRKWSLLMTGPITTASWIIAMYSRSV---- 157 (537)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~l~~~~~~~~~~~~~~---- 157 (537)
++....+..+.. +++.+...+.-..+.+.-......+.+++++|- +||-+++.++.++..+|..+..++...
T Consensus 55 g~~~nlv~ylt~---~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~ 131 (571)
T KOG1237|consen 55 GLVSNLVTYLTL---ELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALL 131 (571)
T ss_pred cchhHHHHHHHH---HhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 445667777777 888888888888888888888999999999997 589999999999998886655443221
Q ss_pred ---------------------HHHHHHHHHHHhHhhhhhhhhhhhhhccCC---Ccc---cchhhhHhHHHHHHHHHHHH
Q psy4866 158 ---------------------LGLYVMRTLQGFSMAAIYVISPMYLGEISE---TSI---RGTIGTLFQISCHLGILYTY 210 (537)
Q Consensus 158 ---------------------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~~---r~~~~~~~~~~~~~G~~i~~ 210 (537)
..+..+.-+..+|.|+.-+...++-+|-++ +++ +...+.++....++|..++.
T Consensus 132 p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~ 211 (571)
T KOG1237|consen 132 PFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQ 211 (571)
T ss_pred CccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHH
Confidence 245666777788999999999999999998 222 34677888888999998887
Q ss_pred HHhhh----hhHHHHHHHHHHHHHHHHHHh
Q psy4866 211 VLGSE----LSYMNYLTYSLIIPIIFTVTF 236 (537)
Q Consensus 211 ~l~~~----~~wr~~~~~~~~~~~~~~~~~ 236 (537)
.+.-+ .+|.+-|.+..+..++.++++
T Consensus 212 t~~vyiq~~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 212 TVLVYIQDNVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred HHHHhhhhcccceeeccHHHHHHHHHHHHH
Confidence 66544 489988888777766555443
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.6e-05 Score=75.87 Aligned_cols=149 Identities=9% Similarity=0.038 Sum_probs=101.2
Q ss_pred hhHHHHHHHHHHHHHhhhHhhhhcccCC-cHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHh
Q psy4866 337 SDYISILFAIILLVSIFPSTYYIDRAGR-RVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFN 415 (537)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (537)
-++......++..+++++.|++..|.+. |+.++.+.++..++.++.....+..+ ...++.++.=++.|++
T Consensus 73 fG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~-------~~~y~mL~~R~l~Gvg-- 143 (488)
T KOG2325|consen 73 FGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPN-------GVKYLMLVARILTGVG-- 143 (488)
T ss_pred hhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhccc-------chHHHHHHHHHHcCcC--
Confidence 3466677889999999999999999886 88888999999999888844432211 1233333333333333
Q ss_pred hccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh--hc-----------cchhhhHhhHHHHHHHH
Q psy4866 416 LGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKH--IG-----------MYSNFLFGGVSSLVCTV 482 (537)
Q Consensus 416 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~--~g-----------~~~~~~~~~~~~~~~~~ 482 (537)
.+...+.-.|+++..-.+.|.++++..+....+|.++||.+...+... .| |..+-++.+++.++.++
T Consensus 144 ~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v 223 (488)
T KOG2325|consen 144 VGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIV 223 (488)
T ss_pred cccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHH
Confidence 333445568888877777889999988887888888887765433221 01 33466777888888888
Q ss_pred HHHhhccCCCCC
Q psy4866 483 YLYYFLLETKGK 494 (537)
Q Consensus 483 ~~~~~~~~~~~~ 494 (537)
+...+++|..+.
T Consensus 224 ~i~~~f~E~~~~ 235 (488)
T KOG2325|consen 224 IILFFFKEVYRG 235 (488)
T ss_pred HHHhheeecccC
Confidence 877777775543
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.1e-06 Score=58.23 Aligned_cols=65 Identities=20% Similarity=0.289 Sum_probs=55.0
Q ss_pred hhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHH
Q psy4866 77 TTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPIT 144 (537)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~ 144 (537)
+.-...+...|.+|...+ +.|++..++|.+.++..+...++.+++|.++||+|+++.++....++
T Consensus 11 ~~f~~~g~~~Pfl~~~~~---~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 11 FYFAALGCLYPFLPLYLK---QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHhhhhHhhh---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 333455667788888888 89999999999999999999999999999999999888777665543
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0002 Score=66.57 Aligned_cols=157 Identities=16% Similarity=0.070 Sum_probs=93.1
Q ss_pred HHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccch
Q psy4866 323 YANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSW 401 (537)
Q Consensus 323 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (537)
|.-.+++++|+.. +.........+...+...+.|.+.||+|||+..+...++..++++.--. +..+
T Consensus 56 Y~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~-------------~~~~ 122 (354)
T PF05631_consen 56 YLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS-------------SNYP 122 (354)
T ss_pred hhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-------------cccH
Confidence 3334456677763 3335555566677788888999999999999998888888887764322 2233
Q ss_pred hhHHHHHHHHHHHhhccccchhh-hcccc----CCccccchhhHHHHHH-HHHHHHHHHHHHHHHHHhhcc--chhhhHh
Q psy4866 402 VPFLSISLLGVFFNLGFGPLFTP-LLSEY----FSSNMKAVSCAVINIL-CTTLGLISYKLFFLMDKHIGM--YSNFLFG 473 (537)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~p~~~~~~~~g~~~~~-~~~g~~~~~~~~g~l~~~~g~--~~~~~~~ 473 (537)
..++.=++.+...+..+.. .-+ ++.|. +|++..+...+...+. +.+..+++..+...+.+..|. ..+|...
T Consensus 123 ~L~~GRvlgGiaTSLLfS~-FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a 201 (354)
T PF05631_consen 123 VLLLGRVLGGIATSLLFSA-FESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAA 201 (354)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHH
Confidence 3333333334443333222 222 22333 5666556666655533 334455555566666676654 6678877
Q ss_pred hHHHHHHHHHHHhhccCCCC
Q psy4866 474 GVSSLVCTVYLYYFLLETKG 493 (537)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~ 493 (537)
..+.+++.++.....+|..+
T Consensus 202 ~~~l~~~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 202 IVLLAVAAVLILKTWPENYG 221 (354)
T ss_pred HHHHHHHHHHHHhcccccCC
Confidence 77777777766555556544
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00031 Score=67.77 Aligned_cols=139 Identities=13% Similarity=0.078 Sum_probs=80.6
Q ss_pred HHHHhhhhhhhhhccchhhHHhhhcCCCC--CCCCCChhhHHHHHHHHHHhhhhhhhHHhhh-----hhhhhHHHHHH-H
Q psy4866 70 TACIAAFTTGMSFAWSAPVLEELLSKESP--IPMSPNEGSWVVAIIEIGNYLSPIPAGMLVN-----RIGRKWSLLMT-G 141 (537)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~d-----r~Grr~~l~~~-~ 141 (537)
++.+..++.|.-.+.....+|.+.+ + -+.|.+|.+...-+ ...+. .-++|.++.| |+||||.-++= -
T Consensus 4 lL~~LY~lQGiP~GL~~gsiPflL~---~~~~~~sy~q~~~fSla-~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q 78 (544)
T PF13000_consen 4 LLVLLYFLQGIPLGLAFGSIPFLLQ---SMAKKVSYSQQAIFSLA-SYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQ 78 (544)
T ss_pred HHHHHHHHcCcccccccccchhhhc---cccCCCChhHheeeeee-echhH-HHHhhhhhhhhhcccccCCcchhhhHHH
Confidence 3455678889999988788899988 6 57787776644221 11111 2345555555 79998764432 2
Q ss_pred HHHHHHHHHHHHHh----------------------h--HHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhH
Q psy4866 142 PITTASWIIAMYSR----------------------S--VLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTL 197 (537)
Q Consensus 142 ~l~~~~~~~~~~~~----------------------~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 197 (537)
.+.++..+..+... + ...+....++.=+-++---.+.-.+.-.+..+++++.+...
T Consensus 79 ~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTc 158 (544)
T PF13000_consen 79 YLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTC 158 (544)
T ss_pred HHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHH
Confidence 22222222222111 0 11222223233333333344555555666778889999999
Q ss_pred hHHHHHHHHHHHHHHh
Q psy4866 198 FQISCHLGILYTYVLG 213 (537)
Q Consensus 198 ~~~~~~~G~~i~~~l~ 213 (537)
...+.++|.+++..+-
T Consensus 159 qtvG~~~Gyfls~tvF 174 (544)
T PF13000_consen 159 QTVGQTAGYFLSFTVF 174 (544)
T ss_pred HHhHhhhhHHHHHHHH
Confidence 9999999998886654
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00041 Score=67.57 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh---h------HHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCc---ccchhhhHhHHHH
Q psy4866 135 WSLLMTGPITTASWIIAMYSR---S------VLGLYVMRTLQGFSMAAIYVISPMYLGEISETS---IRGTIGTLFQISC 202 (537)
Q Consensus 135 ~~l~~~~~l~~~~~~~~~~~~---~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 202 (537)
|+++++.+++.+|.++..++. + .+.++++-++.++|.|+.-+...++++|.++++ +|...+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 678889999999999855543 2 257889999999999999999999999999765 3677888899999
Q ss_pred HHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhhc
Q psy4866 203 HLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFMF 238 (537)
Q Consensus 203 ~~G~~i~~~l~~~----~~wr~~~~~~~~~~~~~~~~~~~ 238 (537)
++|..++..+..+ .+|.+.|.+.++..++.++.++.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 9999999877766 47999999988887776665544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0044 Score=58.92 Aligned_cols=84 Identities=17% Similarity=0.169 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHh---hhh------hHHHHHHHHH
Q psy4866 156 SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLG---SEL------SYMNYLTYSL 226 (537)
Q Consensus 156 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~---~~~------~wr~~~~~~~ 226 (537)
.|...++.-.+.|++.|......+...++ +|++.-+.. ..|.++++.+..++. ... +=...|.+..
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqav----m~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~ 190 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAV----MSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITST 190 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHH----HhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHH
Confidence 46667777888888888888777776665 555543322 233334433333222 111 2234555666
Q ss_pred HHHHHHHHHhhcccCChH
Q psy4866 227 IIPIIFTVTFMFMPESPY 244 (537)
Q Consensus 227 ~~~~~~~~~~~~~~esp~ 244 (537)
++.+++++....+|..|-
T Consensus 191 ~~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 191 VILLLCFVLYLVLPKLPF 208 (406)
T ss_pred HHHHHHHHHHHHhhcchH
Confidence 666666666667777763
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00071 Score=64.44 Aligned_cols=157 Identities=12% Similarity=0.162 Sum_probs=96.5
Q ss_pred chHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhH
Q psy4866 297 SNMKAFVFMAFLAVFRA---FTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSA 373 (537)
Q Consensus 297 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 373 (537)
+.||..++.+.+..+.+ +..+..+..+...++. ....+.+...++.+..++..+.+-|+.||+|-|..++++..
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg---s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ 117 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG---SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTV 117 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc---chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHH
Confidence 34444444444443322 3334455555555443 22234477888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCCcccch--hhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHH
Q psy4866 374 GCSLFSFIAGLYYYVTIELQYEIPYTSW--VPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGL 451 (537)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 451 (537)
+.+++..+=.+.....- ++..+ +......+......+.. .+..-+..-.+|+++|+++..+..+...+|.+
T Consensus 118 ln~iGa~Ir~iss~p~v------~~~f~~~l~~~Gq~iaa~Aq~Fim-~lPskiA~~WF~~~qra~A~~~~v~~n~LGva 190 (480)
T KOG2563|consen 118 LNGIGAWIRLISSLPFV------PPLFRRPLTHTGQSIAAAAQPFIL-GLPSKIAAVWFPPDQRAIATVLGVMGNPLGVA 190 (480)
T ss_pred HHHHHHHHhhhccCccc------cccchhhhhHHhHHHHHHhhhHhh-ccccHHHHhhCCcchhhhhhhHHHhcchHHHH
Confidence 88888765544321100 12222 22233333333322222 12213334458999999999999999999998
Q ss_pred HHHHHHHHHHHh
Q psy4866 452 ISYKLFFLMDKH 463 (537)
Q Consensus 452 ~~~~~~g~l~~~ 463 (537)
++..+-..+..+
T Consensus 191 vg~llppilV~~ 202 (480)
T KOG2563|consen 191 VGFLLPPILVPS 202 (480)
T ss_pred HHhhccceecCC
Confidence 888777666654
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0015 Score=57.66 Aligned_cols=51 Identities=10% Similarity=0.193 Sum_probs=36.0
Q ss_pred cccchhhhHhHHHHHHHHHHHH--HHhh-h------hhHHHHHHHHHHHHHHHHHHhhcc
Q psy4866 189 SIRGTIGTLFQISCHLGILYTY--VLGS-E------LSYMNYLTYSLIIPIIFTVTFMFM 239 (537)
Q Consensus 189 ~~r~~~~~~~~~~~~~G~~i~~--~l~~-~------~~wr~~~~~~~~~~~~~~~~~~~~ 239 (537)
++|+..+.+...+.++|.++.. .+-. - -+|++.+.+.+++.++-++++.++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678888888888999998763 3322 1 279999999888877655555443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0012 Score=68.27 Aligned_cols=143 Identities=10% Similarity=0.074 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHhhhHhhhhcc-cCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhc
Q psy4866 339 YISILFAIILLVSIFPSTYYIDR-AGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLG 417 (537)
Q Consensus 339 ~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (537)
.....+....-+..+++|+++|+ +|+++.+..+.++..++.+++.+...... .........++.+.+..++.+.
T Consensus 27 ~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~----~~~~~~~~~l~gLaLia~G~Gg- 101 (654)
T TIGR00926 27 VLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSS----GHPLHDLLDLLGLALIALGTGG- 101 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccc----ccchHHHHHHHHHHHHHhhccc-
Confidence 33444445555667778899986 69999999998888888877765211000 0000111233344444444443
Q ss_pred cccchhhhccccCCcc---ccchhhHHHHHHHHHHHHHHHHHHHHHHHhh-------ccchhhhHhhHHHHHHHHHHHh
Q psy4866 418 FGPLFTPLLSEYFSSN---MKAVSCAVINILCTTLGLISYKLFFLMDKHI-------GMYSNFLFGGVSSLVCTVYLYY 486 (537)
Q Consensus 418 ~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------g~~~~~~~~~~~~~~~~~~~~~ 486 (537)
.-|...+...|.++++ .+-..+.+.....++|+.+++.+.+++.+.. +|...|.+.+++++++.++...
T Consensus 102 iKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 102 IKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMA 180 (654)
T ss_pred cccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 3344447778877653 3667888888999999999999999887553 4777788877777777666543
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0022 Score=61.52 Aligned_cols=111 Identities=19% Similarity=0.203 Sum_probs=82.2
Q ss_pred CCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHH-----HHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhh
Q psy4866 102 SPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGP-----ITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYV 176 (537)
Q Consensus 102 s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~-----l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 176 (537)
-.++..+...+|.+|..++.--...+ |+ |++.+.+.+ +..+.....-+.++.|.+++.-+..|+..|..++
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 35677888888888877765433222 33 333333222 2222222334567899999999999999999999
Q ss_pred hhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh
Q psy4866 177 ISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL 216 (537)
Q Consensus 177 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~ 216 (537)
-....+.|-.++++|..+++....+-++|..++.+++-.+
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887554
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0097 Score=49.12 Aligned_cols=108 Identities=12% Similarity=0.160 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhcc
Q psy4866 339 YISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGF 418 (537)
Q Consensus 339 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (537)
....+......+..++.+.+.+++|.|+.++++.+...+-...... ...+..+....+.|.+.+..+
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~-------------~~~~~l~~~s~l~G~~~a~lW 107 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY-------------PNSYTLYPASALLGFGAALLW 107 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHHhhhhHHhh
Confidence 4555666777888888999999999999999988877755444322 235566677778888888777
Q ss_pred ccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy4866 419 GPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLM 460 (537)
Q Consensus 419 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 460 (537)
.+.. .++.+...++.+++-.++...+.+.+.++|..+.-.+
T Consensus 108 ~aqg-~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 108 TAQG-TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred Hhhh-HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6654 7888888888899999998888888877777655443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0035 Score=62.21 Aligned_cols=131 Identities=11% Similarity=0.036 Sum_probs=83.3
Q ss_pred HHhhhHhhhhcccC-----CcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhh
Q psy4866 350 VSIFPSTYYIDRAG-----RRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTP 424 (537)
Q Consensus 350 ~~~~~~g~l~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (537)
...++.|.++|-+. ||+.++++.++..++.+.++..... ..+.....+.+++...+.... -.+.-+
T Consensus 39 ~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~l~la~~g~a~~-DV~aDa 109 (433)
T PF03092_consen 39 SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS--------ESSAAIAVVLLFLASFGYAFA-DVAADA 109 (433)
T ss_pred HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc--------cchhhhHHHHHHHHHHHHHHH-HHhhhH
Confidence 45678899999874 4445555665555545544443110 112222233333333333332 223446
Q ss_pred hccccC---CccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhHHHHHHHHHHHhhccC
Q psy4866 425 LLSEYF---SSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFLLE 490 (537)
Q Consensus 425 ~~~~~~---p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (537)
+..|.. |.+ +|...+....+..+|+.++..+.|.+.+..+++..|.+.+.+..+..+..+.+.+|
T Consensus 110 ~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 110 LVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 666664 444 77888888999999999999999999999999988888877777776666565555
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0015 Score=46.58 Aligned_cols=64 Identities=14% Similarity=0.163 Sum_probs=50.8
Q ss_pred HHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHH
Q psy4866 311 FRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAG 374 (537)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 374 (537)
+..+++...+..|.+.++++.|.+. +.+....+..+..+++.++.|.++||.++++........
T Consensus 10 f~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 10 FFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 3344456778889999999888873 455777788899999999999999999999887765543
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.22 E-value=4.6e-05 Score=77.04 Aligned_cols=170 Identities=17% Similarity=0.175 Sum_probs=1.0
Q ss_pred HHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccC
Q psy4866 317 VQSIIAYANTIFASSETF-LPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYE 395 (537)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (537)
...+..-++.+-++.+.+ .+.+.+...+-++.++..++..++.+|..|-+.+-.+.++++++.+++++-.........+
T Consensus 19 ~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~ 98 (539)
T PF03137_consen 19 SGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYE 98 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccc
Confidence 333344444544455554 3555777788899999999999999998888888899999999988887654332111000
Q ss_pred ----------------------------------Ccccc----hhhHHHHHHHHHHHhhccccchhhhccccCCccccch
Q psy4866 396 ----------------------------------IPYTS----WVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAV 437 (537)
Q Consensus 396 ----------------------------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 437 (537)
..... +..++..++.|.+.. ...++..+|+-|.++++..+.
T Consensus 99 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~-pl~tLG~tYiDDnv~~~~spl 177 (539)
T PF03137_consen 99 EASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGAT-PLYTLGITYIDDNVSKKNSPL 177 (539)
T ss_dssp -----------------------------------------------------SSS------------------------
T ss_pred cccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhcccc-CCccceeeeeccccccccCcc
Confidence 00111 122222233333322 244567789999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh---------------------hc-cchhhhHhhHHHHHHHHHHHhh
Q psy4866 438 SCAVINILCTTLGLISYKLFFLMDKH---------------------IG-MYSNFLFGGVSSLVCTVYLYYF 487 (537)
Q Consensus 438 ~~g~~~~~~~~g~~~~~~~~g~l~~~---------------------~g-~~~~~~~~~~~~~~~~~~~~~~ 487 (537)
..|+......+|-++|-.+.+...+. .| |+..|++.+.+.++..+....+
T Consensus 178 YiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~F 249 (539)
T PF03137_consen 178 YIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFF 249 (539)
T ss_dssp ------------------------------------------------------------------------
T ss_pred chhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999988888887777655431 12 4555666666666665555333
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.013 Score=57.36 Aligned_cols=137 Identities=15% Similarity=0.051 Sum_probs=96.4
Q ss_pred chhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHH---HHh------
Q psy4866 85 SAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAM---YSR------ 155 (537)
Q Consensus 85 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~---~~~------ 155 (537)
+...+..+.. .-|+++..+|..-+...+....+.+...++.+|+|..|.=++++....+...++. +.+
T Consensus 277 f~~lmt~yl~---~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~ 353 (432)
T PF06963_consen 277 FGGLMTAYLK---SQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSS 353 (432)
T ss_pred CcHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchh
Confidence 4555555555 5699999999999999999999999999999999988877777654443333222 111
Q ss_pred -hHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhhhHHHHHHH
Q psy4866 156 -SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTY 224 (537)
Q Consensus 156 -~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~~wr~~~~~ 224 (537)
+...++.+-.+.=+|.=+.-....-++.|..|+++||...+.-....++--++...++-.+....-|..
T Consensus 354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~P~~F~~ 423 (432)
T PF06963_consen 354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPRPSQFGW 423 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCChHhcCh
Confidence 233344344444444444556677788999999999999999998888888887777655443333333
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.038 Score=55.99 Aligned_cols=116 Identities=15% Similarity=0.052 Sum_probs=68.1
Q ss_pred CCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHH---HHHH----HHHhhH-HHHHHHHHHHHh
Q psy4866 98 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTAS---WIIA----MYSRSV-LGLYVMRTLQGF 169 (537)
Q Consensus 98 ~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~---~~~~----~~~~~~-~~l~~~r~l~G~ 169 (537)
-+|-+..+.+.+.+++.+|.++|+.+++++.++.-++.. .+-+.+..++ ..+. ++...+ ..++..-++.|+
T Consensus 44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 122 (521)
T PRK03612 44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGL 122 (521)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788889999999999999999999988744333322 2211111111 1111 111111 223344567788
Q ss_pred HhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh
Q psy4866 170 SMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE 215 (537)
Q Consensus 170 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~ 215 (537)
..|+..|....+..+... ++-+...+-......+|.++|.++.++
T Consensus 123 l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~ 167 (521)
T PRK03612 123 LIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPF 167 (521)
T ss_pred HHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHH
Confidence 888888887777665432 123455556666666666666666544
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.036 Score=54.35 Aligned_cols=102 Identities=17% Similarity=0.208 Sum_probs=77.9
Q ss_pred HHHHHhhhhhhhHHhhh---hhhhhHHHHHHHHHHHHHHHHHHHH------------------hhHHHHHHHHHHHHhHh
Q psy4866 113 IEIGNYLSPIPAGMLVN---RIGRKWSLLMTGPITTASWIIAMYS------------------RSVLGLYVMRTLQGFSM 171 (537)
Q Consensus 113 ~~~~~~~~~~~~G~l~d---r~Grr~~l~~~~~l~~~~~~~~~~~------------------~~~~~l~~~r~l~G~~~ 171 (537)
..+|..+++.+.+.+.+ ++||++++.++.++..++.++.-+. +++...++.-++.|++-
T Consensus 288 ~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D 367 (461)
T KOG3098|consen 288 IGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGD 367 (461)
T ss_pred HhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHH
Confidence 33444555566666665 4889999999998888887776553 24667788899999999
Q ss_pred hhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh
Q psy4866 172 AAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE 215 (537)
Q Consensus 172 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~ 215 (537)
+......+.++.+.. +++|..+.++...-..++..++......
T Consensus 368 ~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 368 ACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred HHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999 5678888998887777777766554433
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.02 Score=55.09 Aligned_cols=131 Identities=11% Similarity=0.005 Sum_probs=84.6
Q ss_pred HHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhc
Q psy4866 347 ILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLL 426 (537)
Q Consensus 347 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (537)
..++..+....+.|.++.|++++++.+...+...++.+. ...+...+.-++.|...+.- ...++++
T Consensus 53 Syl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~------------~sv~~mq~~q~~yg~~~a~e--vay~sYi 118 (412)
T PF01770_consen 53 SYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG------------TSVLAMQLMQFFYGLATAAE--VAYYSYI 118 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH------------CcHHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence 345556667889999999999999888777776666553 23344445555555554432 2344777
Q ss_pred cccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc--cchhhhHhhHHHHHHHHHHHhhccCCC
Q psy4866 427 SEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG--MYSNFLFGGVSSLVCTVYLYYFLLETK 492 (537)
Q Consensus 427 ~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (537)
-...|+++-.++.+......-+|.+++..++-.+....+ +.....+..+...++.++. +++|..+
T Consensus 119 ys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~-~fLP~~~ 185 (412)
T PF01770_consen 119 YSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIA-LFLPMPK 185 (412)
T ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHcCCCC
Confidence 777888888899999999988888888887776666333 3333333333333443333 5566544
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.028 Score=55.76 Aligned_cols=113 Identities=12% Similarity=0.060 Sum_probs=74.9
Q ss_pred HHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCC----------cc----------cchhhHHHHH
Q psy4866 349 LVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEI----------PY----------TSWVPFLSIS 408 (537)
Q Consensus 349 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~----------~~~~~~~~~~ 408 (537)
++..++.+++++|++|++++..........+.++++..+..... .++ .. ..|...+...
T Consensus 58 ~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~-~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv 136 (472)
T TIGR00769 58 VIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDL-LHPTALADKLLSLLPPGFMGFIAILRIWSFALFYV 136 (472)
T ss_pred HHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhh-cCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHH
Confidence 33377789999999999998877777776666666654332200 000 00 0222222222
Q ss_pred HHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4866 409 LLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 462 (537)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 462 (537)
..........+-+.|.+++|.+..++..+-.++....+++|..+++.+..++.+
T Consensus 137 ~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 137 MAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222233333778999999999999999999999999999999998888763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3097|consensus | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.32 Score=44.83 Aligned_cols=99 Identities=18% Similarity=0.246 Sum_probs=69.8
Q ss_pred HHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCC--cc
Q psy4866 113 IEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISET--SI 190 (537)
Q Consensus 113 ~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~ 190 (537)
..+....++++.+.+..++|.|.++.++...+... +..-+-+.|..++-.-.+.|+|.+..+..--+++++.-.. +.
T Consensus 67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~ 145 (390)
T KOG3097|consen 67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQ 145 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHh
Confidence 33455566666669999999999999998888664 4444557888999999999999999998888887765432 22
Q ss_pred c-------------chhhhHhHHHHHHHHHHHHHH
Q psy4866 191 R-------------GTIGTLFQISCHLGILYTYVL 212 (537)
Q Consensus 191 r-------------~~~~~~~~~~~~~G~~i~~~l 212 (537)
| |....++......|..++..+
T Consensus 146 ~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli 180 (390)
T KOG3097|consen 146 RGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLI 180 (390)
T ss_pred hhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 3 334444555555665555443
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.015 Score=59.87 Aligned_cols=173 Identities=18% Similarity=0.141 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHhcCCC-CChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccC--
Q psy4866 319 SIIAYANTIFASSETF-LPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYE-- 395 (537)
Q Consensus 319 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 395 (537)
.+..-+..+=+..+.+ ..++++...+-++..+...+..+...|..|-+.+-.+.++++++.++.++.........++
T Consensus 115 y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~ 194 (735)
T KOG3626|consen 115 YFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELE 194 (735)
T ss_pred hhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhh
Confidence 3333334433344444 2444666667778888888888998999998999999999999988887653221110000
Q ss_pred -------------------------------C---ccc---ch-hhHHHHHHHHHHHhhccccchhhhccccCCccccch
Q psy4866 396 -------------------------------I---PYT---SW-VPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAV 437 (537)
Q Consensus 396 -------------------------------~---~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 437 (537)
. ... .| +.++..++.|.+. .-..++..+|+-|-..++....
T Consensus 195 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~-Tpi~tlGisYiDDnvk~~~Spl 273 (735)
T KOG3626|consen 195 VIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGA-TPIFTLGISYIDDNVKKKNSPL 273 (735)
T ss_pred hhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCC-CCCccCCCccccccccccCCcH
Confidence 0 011 11 1122222233332 2244566688889888888899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh------------------c-cchhhhHhhHHHHHHHHHHHhhccCCCC
Q psy4866 438 SCAVINILCTTLGLISYKLFFLMDKHI------------------G-MYSNFLFGGVSSLVCTVYLYYFLLETKG 493 (537)
Q Consensus 438 ~~g~~~~~~~~g~~~~~~~~g~l~~~~------------------g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (537)
..|+...+..+|-++|-.+.+.+...+ | |+..|++.+.+.++..+.. +++|+...
T Consensus 274 Ylgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~-f~fPk~lp 347 (735)
T KOG3626|consen 274 YLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPL-FFFPKELP 347 (735)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH-HhCcccCc
Confidence 999999999999888888887766421 2 4455777777777776665 44555443
|
|
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.021 Score=51.63 Aligned_cols=129 Identities=14% Similarity=0.103 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhcc
Q psy4866 106 GSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEI 185 (537)
Q Consensus 106 ~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 185 (537)
.|.+.-+-.+...+..+.+....||+---.=+.+..++.+.+.++.+++++.++-+.+-.+..++.|.....-.++-+.
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~- 142 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR- 142 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-
Confidence 4555556666677777777788888543222344456667788888999999999999999988888776655544333
Q ss_pred CCCcccchhhhHhHHHHHHHHHHHH----HHhhh--hhHHHHHHHHHHHHHHHHHHhhcc
Q psy4866 186 SETSIRGTIGTLFQISCHLGILYTY----VLGSE--LSYMNYLTYSLIIPIIFTVTFMFM 239 (537)
Q Consensus 186 ~~~~~r~~~~~~~~~~~~~G~~i~~----~l~~~--~~wr~~~~~~~~~~~~~~~~~~~~ 239 (537)
+++. ..+.+..+.+.++++|. .+..+ +.-|...++...+.++..+.++++
T Consensus 143 Y~~~----~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~l 198 (409)
T KOG3880|consen 143 YPSI----VIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFL 198 (409)
T ss_pred CCCc----eeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhe
Confidence 3332 34444444444444443 23322 356777777777776666665554
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0012 Score=62.16 Aligned_cols=117 Identities=13% Similarity=0.012 Sum_probs=2.2
Q ss_pred HHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccC--CcccchhhHHHHHHHHHHHhh
Q psy4866 339 YISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYE--IPYTSWVPFLSISLLGVFFNL 416 (537)
Q Consensus 339 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 416 (537)
.....+.++..+|+.+.++..-+..+++.+.+..+.-.+..-++........ .+.. .-.+.+..++.+++++...+.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~-~~~~~~~~~~d~~~~i~~~l~g~TNGy 264 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPR-PRYLPVLFNSDAWFIILMLLFGFTNGY 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcc-cccCCCcccchHHHHHHHHHHHHccch
Confidence 3456788999999998887532211333333322222222222222111100 0000 001334445555666665554
Q ss_pred ccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHH
Q psy4866 417 GFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLF 457 (537)
Q Consensus 417 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 457 (537)
. .++...+..+..++++|..+..+..+.-.+|-.+|..+.
T Consensus 265 l-~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 265 L-STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp ---HHHH----------------------------------
T ss_pred h-hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 445567888888888888888887777777777776543
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.2 Score=50.82 Aligned_cols=50 Identities=12% Similarity=0.091 Sum_probs=36.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH-hhccchhhhHhhHHHHHHHHHH
Q psy4866 435 KAVSCAVINILCTTLGLISYKLFFLMDK-HIGMYSNFLFGGVSSLVCTVYL 484 (537)
Q Consensus 435 ~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~~~~ 484 (537)
.+...|-.+....+|+++|..+.+.+.- ..|.....++.+.+.+++.++.
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 4677888999999999999999887664 6777666666655555544433
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.32 Score=45.46 Aligned_cols=136 Identities=15% Similarity=0.084 Sum_probs=80.9
Q ss_pred HHHHHHHHhcCCCC---ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcc
Q psy4866 322 AYANTIFASSETFL---PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPY 398 (537)
Q Consensus 322 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (537)
...+.+........ ..........+...++.++.|.+.||.|||+.+..+.....++.+...+.. ..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~ 92 (338)
T COG0477 23 PALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP----------NV 92 (338)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc----------cc
Confidence 34444444443332 234666667777778889999999999999777766655333323332210 00
Q ss_pred cchhhHHHHHHHHHHHhhccccchhhhccccCCc-cccchhhHHHHH-HHHHHHHHHHHHHHHHHHh--hccch
Q psy4866 399 TSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSS-NMKAVSCAVINI-LCTTLGLISYKLFFLMDKH--IGMYS 468 (537)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~-~~~~g~~~~~~~~g~l~~~--~g~~~ 468 (537)
..+.........+.+.+ ...+....+..|..|. +.|+...+.... ...++..+++.+.+.+... .+|+.
T Consensus 93 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (338)
T COG0477 93 GLALLLILRLLQGLGGG-GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRA 165 (338)
T ss_pred hHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 12222222222333333 2345556888898887 567888888887 5777888888766666554 34554
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.046 Score=53.27 Aligned_cols=117 Identities=12% Similarity=0.081 Sum_probs=78.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCcc---ccchhhHHH
Q psy4866 366 VLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSN---MKAVSCAVI 442 (537)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~ 442 (537)
+.+.++.++..++.+++.+...... .+.........+.+.++..+.+. .-|...++..|.++++ .+.+.....
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~---~~~~~~~~~~~~gL~lia~G~G~-~K~ni~~~~~dq~~~~~~~~~~~~F~~f 77 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPS---LPSGIQLGLFYIGLALIAVGTGG-IKPNISPFGADQYDEDDDSRRDSFFNWF 77 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSS---C------CHHHHHHHHHHHHHHC-CHHHHHHHHHHCSSTTTTTHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcch---hhhhHHHHHHHHHHHHHHhcccc-ccccHHHHHHHHhcccchhhhhhhHHHH
Confidence 4567777777888777555432211 00011224455556666666554 4455558888888765 456677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhhHhhHHHHHHHHHHHh
Q psy4866 443 NILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYY 486 (537)
Q Consensus 443 ~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 486 (537)
....++|..+++.+.+++.++.||...|.+.++..+++.+..+.
T Consensus 78 Y~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 78 YWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999988888887766543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.02 Score=54.98 Aligned_cols=155 Identities=20% Similarity=0.124 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcc----cCCcHHHHH-hhHH
Q psy4866 301 AFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDR----AGRRVLFLV-SSAG 374 (537)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~~-~~~~ 374 (537)
.++....+....+++ ...-..|.+.+++..|... -.+.......+.+++..++.|..+|| +||||..+. +..+
T Consensus 33 ~li~v~~ia~Gvqf~-wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~ 111 (498)
T KOG0637|consen 33 KLISVASIAAGVQFG-WALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL 111 (498)
T ss_pred HHHHHHHHHHHHHHH-HHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence 334444444444443 4455667888888887762 23344455567778888999999997 477766554 4445
Q ss_pred HHHHHHHHHHHHHhhhccccCCccc-c--h---hhHHHHHHHHHHHhhccccchhhhccccCCccccch-hhHHHHHHHH
Q psy4866 375 CSLFSFIAGLYYYVTIELQYEIPYT-S--W---VPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAV-SCAVINILCT 447 (537)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~-~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~g~~~~~~~ 447 (537)
..++++++.+........ .|.... . + ..++...++-+.......|. -++..++...+.+.+ +.+....+..
T Consensus 112 i~~~l~Lig~aaDig~~l-gd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~-ra~L~Dl~~~d~~~~~Ans~f~~f~a 189 (498)
T KOG0637|consen 112 IAVSLFLIGYAADIGLLL-GDNERKPVKPRAIVLFILGFWLLDVANNTLQGPC-RALLADLARGDAKKTRANSVFSFFMA 189 (498)
T ss_pred HHHHHhhhhhHhhhhHHh-cCCcccccchHHHHHHHHHhHHHHhhhhhhhhhH-HHHHHHhccChhhhhccchhHHHHHH
Confidence 555555554432221100 011111 1 1 11222223333333444443 478888877666666 9999999998
Q ss_pred HHHHHHHHHHH
Q psy4866 448 TLGLISYKLFF 458 (537)
Q Consensus 448 ~g~~~~~~~~g 458 (537)
+|+.+|-.+.+
T Consensus 190 vGnvLGY~~g~ 200 (498)
T KOG0637|consen 190 VGNVLGYALGS 200 (498)
T ss_pred hcceeeeeccc
Confidence 88888766554
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.48 Score=46.99 Aligned_cols=108 Identities=14% Similarity=0.107 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHhhhhhhhHHhhhhhhhh-HHHHHHHH---HHHHHHHHHHH---------HhhHHHHHHHHHHHHhHhh
Q psy4866 106 GSWVVAIIEIGNYLSPIPAGMLVNRIGRK-WSLLMTGP---ITTASWIIAMY---------SRSVLGLYVMRTLQGFSMA 172 (537)
Q Consensus 106 ~~~~~s~~~~~~~~~~~~~G~l~dr~Grr-~~l~~~~~---l~~~~~~~~~~---------~~~~~~l~~~r~l~G~~~~ 172 (537)
.-.+...|.+|-.+|..+..+.. .-++| +.+.+..+ ++.--.++|.. -++-+..++.-++.|+..|
T Consensus 309 ~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG 387 (437)
T TIGR00939 309 PIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG 387 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence 34566777777777777554321 11222 12222222 22222233322 2355677788999999999
Q ss_pred hhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhh
Q psy4866 173 AIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGS 214 (537)
Q Consensus 173 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~ 214 (537)
-....++.+..+..++++|..+..+...+..+|..+|..++.
T Consensus 388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF 429 (437)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888877653
|
|
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=95.09 E-value=1.3 Score=42.53 Aligned_cols=44 Identities=5% Similarity=0.070 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhhHhh
Q psy4866 314 FTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTY 357 (537)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 357 (537)
....+.+.+-.+++.+.......+......+.+...+..++.-.
T Consensus 31 LlpWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~ 74 (406)
T KOG1479|consen 31 LLPWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNL 74 (406)
T ss_pred ccchHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555433323333333344444443333333
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=94.65 E-value=1 Score=45.23 Aligned_cols=114 Identities=11% Similarity=0.072 Sum_probs=73.7
Q ss_pred HHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcc--------------------cchhhHHH
Q psy4866 347 ILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPY--------------------TSWVPFLS 406 (537)
Q Consensus 347 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~ 406 (537)
+.++...+..++++++++.++...........+.++++..+... .-.+++. ..|...+
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~-~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~sl- 148 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNR-DILHPDAFADKLLAILPPGFKGFIAMFRNWTFSL- 148 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhch-hhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHH-
Confidence 34555666789999999999887777766666666666543221 0000000 0011111
Q ss_pred HHHHHHHHh-hccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4866 407 ISLLGVFFN-LGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 462 (537)
Q Consensus 407 ~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 462 (537)
..+..-.++ ...+-+.|.+++|.++.++..+-.++.....++|..+++.+..++.+
T Consensus 149 fYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 149 FYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222 22333568999999999999999999999999999999988887777
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.31 Score=35.28 Aligned_cols=68 Identities=12% Similarity=-0.002 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHH
Q psy4866 318 QSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLY 385 (537)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (537)
+.+...+|...++.+.+. +.++......++.++|.+...++.++.++++.+..+.+...+..+.+++.
T Consensus 9 FayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 9 FAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556788888888773 56688899999999999999999999888888888888888888877764
|
Note that many members are hypothetical proteins. |
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.26 Score=44.90 Aligned_cols=119 Identities=15% Similarity=0.173 Sum_probs=86.0
Q ss_pred CCCCCC-ChhhHHHHHHHHHHhhhhhhhHHhhhhh-hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhh
Q psy4866 98 PIPMSP-NEGSWVVAIIEIGNYLSPIPAGMLVNRI-GRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIY 175 (537)
Q Consensus 98 ~~~~s~-~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 175 (537)
.+.++. .|.-|....|.+|..++.--.-..--++ ---.++..-.+++.+...+..+.++++..++.-+.-|+-.|..+
T Consensus 281 g~sls~~sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasY 360 (409)
T KOG3880|consen 281 GFSLSKDSQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASY 360 (409)
T ss_pred CCccchhhcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHH
Confidence 444443 3688999999888766543322221111 11123334455556666677788999999999999999888888
Q ss_pred hhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhh
Q psy4866 176 VISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL 216 (537)
Q Consensus 176 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~ 216 (537)
+-..--+.+-.++++|-.+++....+-.+|..++..++-.+
T Consensus 361 VNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 361 VNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 88888888888899999999999999999999998887443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.68 E-value=5.2 Score=39.52 Aligned_cols=116 Identities=13% Similarity=0.103 Sum_probs=77.1
Q ss_pred HHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhc-cccC----------Cc-cc--------chhhHHH
Q psy4866 347 ILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIE-LQYE----------IP-YT--------SWVPFLS 406 (537)
Q Consensus 347 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~~-~~--------~~~~~~~ 406 (537)
+.++..++..++.+++.+.++...........++++++..+...+ .+.| .+ .- .|...+.
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 456677788899999999998887777777777777766552210 0000 11 10 1222222
Q ss_pred HHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4866 407 ISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 462 (537)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 462 (537)
..+.-.-.....+-+.+..++|....++..+-.++.+...+++..++..+..++..
T Consensus 154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22222222233333667889999999999999999999999999999988888766
|
|
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.61 Score=41.74 Aligned_cols=136 Identities=13% Similarity=-0.016 Sum_probs=62.5
Q ss_pred HHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhh
Q psy4866 346 IILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPL 425 (537)
Q Consensus 346 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (537)
...++...+.|-+.||.|||+.-+.-.+...++++.= . ...+...++.=.+-|...+..+...-.=+
T Consensus 83 gSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTK-------h------SpqYkVLmVGR~LGGiaTsLLFSaFEsWl 149 (454)
T KOG4332|consen 83 GSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITK-------H------SPQYKVLMVGRVLGGIATSLLFSAFESWL 149 (454)
T ss_pred chHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhh-------c------CCceEEEeehhhhhhHHHHHHHHHHHHHH
Confidence 3445556668889999999997655544444443321 1 11222333333333333333232222123
Q ss_pred ccccC-----CccccchhhHHHH-HHHHHHHHHHHHHHHHHHHhhccc--hhhhHhhHHHHHHHHHHHhhccCCCCC
Q psy4866 426 LSEYF-----SSNMKAVSCAVIN-ILCTTLGLISYKLFFLMDKHIGMY--SNFLFGGVSSLVCTVYLYYFLLETKGK 494 (537)
Q Consensus 426 ~~~~~-----p~~~~~~~~g~~~-~~~~~g~~~~~~~~g~l~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (537)
+.|.. |.+......+=.. ....+-.++.......+.|+++.. .+|-..+.+..++..+.+.-..|..++
T Consensus 150 iaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~ENygd 226 (454)
T KOG4332|consen 150 IAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSENYGD 226 (454)
T ss_pred HHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhccCC
Confidence 44543 3332222222222 223344555555556666766544 455544444444444433333344444
|
|
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=91.19 E-value=8.3 Score=39.74 Aligned_cols=147 Identities=14% Similarity=0.069 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHhhhHhhhhccc-CCcHHHHHhhHHHHHHHHHHHHHHHhhhccc-------c----CCcccchhhHHH
Q psy4866 339 YISILFAIILLVSIFPSTYYIDRA-GRRVLFLVSSAGCSLFSFIAGLYYYVTIELQ-------Y----EIPYTSWVPFLS 406 (537)
Q Consensus 339 ~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~~~~ 406 (537)
..............+++++++|-+ ||-+.+.++.++..++.+++..........+ . ..+......++.
T Consensus 77 ~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~ 156 (571)
T KOG1237|consen 77 NNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLY 156 (571)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHH
Confidence 444445556667778889999965 7888888888888877666655443332110 0 000111111222
Q ss_pred HHHHHHH-HhhccccchhhhccccCC----cccc--chhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhhHHHHH
Q psy4866 407 ISLLGVF-FNLGFGPLFTPLLSEYFS----SNMK--AVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLV 479 (537)
Q Consensus 407 ~~~~~~~-~~~~~~~~~~~~~~~~~p----~~~~--~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 479 (537)
..+.... ...+.-+...++-+|-++ .+.+ ..-+.......+.|..++..+.-++-++.||...|.+..+...+
T Consensus 157 ~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~l 236 (571)
T KOG1237|consen 157 GALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNAL 236 (571)
T ss_pred HHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHH
Confidence 2222221 222334444477777776 2222 35677778888999999999888888889999888888887777
Q ss_pred HHHHHH
Q psy4866 480 CTVYLY 485 (537)
Q Consensus 480 ~~~~~~ 485 (537)
+.++.+
T Consensus 237 ai~iF~ 242 (571)
T KOG1237|consen 237 AILIFL 242 (571)
T ss_pred HHHHHH
Confidence 766543
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=87.33 E-value=0.2 Score=47.28 Aligned_cols=106 Identities=13% Similarity=0.242 Sum_probs=3.8
Q ss_pred HHHHHHHHHHhhhhhhhHHhhhh-hhhhHHHHHH--HHHHHHHHHHHH----------HHhhHHHHHHHHHHHHhHhhhh
Q psy4866 108 WVVAIIEIGNYLSPIPAGMLVNR-IGRKWSLLMT--GPITTASWIIAM----------YSRSVLGLYVMRTLQGFSMAAI 174 (537)
Q Consensus 108 ~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~--~~l~~~~~~~~~----------~~~~~~~l~~~r~l~G~~~~~~ 174 (537)
.+...|.++-.+|..+.++.-=+ -.+|.+...+ =+++.-..++|. +.+|-+..++.-++.|+..|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 35667888888888877764211 1244433322 122222222221 2345577778899999999999
Q ss_pred hhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHh
Q psy4866 175 YVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLG 213 (537)
Q Consensus 175 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~ 213 (537)
...++.+..+..++++|..+..+...+..+|..+|..++
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp -HHHH----------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888888888888887665
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=86.01 E-value=26 Score=31.67 Aligned_cols=102 Identities=17% Similarity=0.217 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHhhhhhhhHHhhhh-hhhhHHHH----HHHHHHHHHHHHHHH-H----hhHHHHHHHHHHHHhHhhhhhh
Q psy4866 107 SWVVAIIEIGNYLSPIPAGMLVNR-IGRKWSLL----MTGPITTASWIIAMY-S----RSVLGLYVMRTLQGFSMAAIYV 176 (537)
Q Consensus 107 ~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~----~~~~l~~~~~~~~~~-~----~~~~~l~~~r~l~G~~~~~~~~ 176 (537)
....-++..|..+|....|..... +.||+.+. .+++++.+..+.... . .++..+++.-|+.|++.=+..+
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 444556666777777777887764 56666544 334555554444212 1 1466678888888887655555
Q ss_pred hhhhhhhccCCCcccchhhhHhHHHHHHHHHHH
Q psy4866 177 ISPMYLGEISETSIRGTIGTLFQISCHLGILYT 209 (537)
Q Consensus 177 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~ 209 (537)
+...+-.|+ ++.++.+..-.++..+++|.++-
T Consensus 224 ViL~lPhEy-K~~~pk~ig~~Fg~iWGfGY~~y 255 (267)
T PF07672_consen 224 VILNLPHEY-KGYNPKKIGIQFGLIWGFGYIFY 255 (267)
T ss_pred HHhcChhhh-cCCCcceehhHHHHHHHHHHHHH
Confidence 554444443 33334445555666777877654
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=84.93 E-value=20 Score=34.50 Aligned_cols=34 Identities=9% Similarity=-0.029 Sum_probs=21.6
Q ss_pred hhccccCCccccchhhHHHHHHHHHHHHHHHHHH
Q psy4866 424 PLLSEYFSSNMKAVSCAVINILCTTLGLISYKLF 457 (537)
Q Consensus 424 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 457 (537)
.+...+..++..|-+..........|.+.+..++
T Consensus 156 gwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 156 GWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred HHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence 4555556667677777666666667776665544
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=84.30 E-value=7 Score=38.83 Aligned_cols=48 Identities=25% Similarity=0.357 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHH
Q psy4866 159 GLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGI 206 (537)
Q Consensus 159 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 206 (537)
.+++.-.+.-+..-..+++..++-+.+.+|.-=|.+|.+.++..++|+
T Consensus 407 lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGG 454 (544)
T PF13000_consen 407 LVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGG 454 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCC
Confidence 344556777788888889999999999999999999999999999996
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=82.14 E-value=6.5 Score=32.06 Aligned_cols=33 Identities=6% Similarity=-0.116 Sum_probs=25.6
Q ss_pred cchhhhccccCCccccchhhHHHHHHHHHHHHH
Q psy4866 420 PLFTPLLSEYFSSNMKAVSCAVINILCTTLGLI 452 (537)
Q Consensus 420 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 452 (537)
.+.|.+++....++..|+..|+-.+-.+++-+.
T Consensus 113 GisYGilSaSWD~~r~GSllG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 113 GISYGILSASWDPEREGSLLGWEEFKRNWGRMW 145 (153)
T ss_pred hhhhhhcccccCCCCCCCcccHHHHHHhHHHHH
Confidence 455677777788888899999998888876554
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length. |
| >PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length | Back alignment and domain information |
|---|
Probab=80.60 E-value=39 Score=29.62 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=15.3
Q ss_pred hhhHhHHHHHHHHHHHHHHhhhhhHH
Q psy4866 194 IGTLFQISCHLGILYTYVLGSELSYM 219 (537)
Q Consensus 194 ~~~~~~~~~~~G~~i~~~l~~~~~wr 219 (537)
.....-.+..+|.+++..+....+.+
T Consensus 167 ~~~~~i~~f~~Ga~~ga~l~~~~~~~ 192 (209)
T PF06912_consen 167 RYLLIILSFFIGAILGALLYRRLGFW 192 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34444555666666666666666643
|
The function of this family is unknown although a few members are thought to be membrane proteins. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.12 E-value=55 Score=31.06 Aligned_cols=85 Identities=12% Similarity=0.043 Sum_probs=59.9
Q ss_pred CCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHH----H-HHHH----hhHHHHHHHHHHHHhH
Q psy4866 100 PMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWI----I-AMYS----RSVLGLYVMRTLQGFS 170 (537)
Q Consensus 100 ~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~----~-~~~~----~~~~~l~~~r~l~G~~ 170 (537)
|-+--|.+.+.+.|..+..+|+...-++.|.--.-+.+..-+++..++.+ + ..|+ ++-+.+.++-++.|.-
T Consensus 39 G~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~L 118 (508)
T COG4262 39 GGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVL 118 (508)
T ss_pred CCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 45667889999999999999999998888764443333333333222211 1 1233 3567788899999999
Q ss_pred hhhhhhhhhhhhhc
Q psy4866 171 MAAIYVISPMYLGE 184 (537)
Q Consensus 171 ~~~~~~~~~~~i~~ 184 (537)
.|...|..+.++..
T Consensus 119 VG~EiPL~mrml~~ 132 (508)
T COG4262 119 VGAEIPLLMRMLQR 132 (508)
T ss_pred HhcchHHHHHHHHH
Confidence 99999999988876
|
|
| >COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.02 E-value=43 Score=31.05 Aligned_cols=153 Identities=12% Similarity=0.092 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhh---hhhhHHHHH
Q psy4866 63 LFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR---IGRKWSLLM 139 (537)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr---~Grr~~l~~ 139 (537)
++.+..+++.++.++.-+..++.+..+..+.+ .+++..+..+++.+...+. ++.+-.++ ||.||.=++
T Consensus 22 r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLAD---a~Hml~D~~al~lal~A~~------~a~r~~~~~~TfGy~R~eiL 92 (296)
T COG1230 22 RRLLIALLLNLAFMLIEIIGGLLTGSLALLAD---ALHMLSDALALLLALIAIK------LARRPATKRFTFGYKRLEIL 92 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHh---HHHHHHHHHHHHHHHHHHH------HhcCCCCCCCCccHhHHHHH
Confidence 44445555556666666666667777777777 7777666666665554433 22233333 888887666
Q ss_pred HHHHHHHHHHHHHHHh--------------hHHHHHHHHHHHHhHhhhhhhhhhhhhhccCC--CcccchhhhH-hHHHH
Q psy4866 140 TGPITTASWIIAMYSR--------------SVLGLYVMRTLQGFSMAAIYVISPMYLGEISE--TSIRGTIGTL-FQISC 202 (537)
Q Consensus 140 ~~~l~~~~~~~~~~~~--------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~-~~~~~ 202 (537)
+.++.++..+..++.- +. ..++.-.+.|+..- ..+.-++.+--. .+.|+..+-. --+..
T Consensus 93 aa~~nav~Li~~s~~I~~EAi~R~~~P~~i~~-~~ml~va~~GL~vN---~~~a~ll~~~~~~~lN~r~a~LHvl~D~Lg 168 (296)
T COG1230 93 AAFLNALLLIVVSLLILWEAIQRLLAPPPIHY-SGMLVVAIIGLVVN---LVSALLLHKGHEENLNMRGAYLHVLGDALG 168 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc-cchHHHHHHHHHHH---HHHHHHhhCCCcccchHHHHHHHHHHHHHH
Confidence 6666555444433311 11 11112222232211 112222222211 1234444433 45567
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy4866 203 HLGILYTYVLGSELSYMNYLTYSLII 228 (537)
Q Consensus 203 ~~G~~i~~~l~~~~~wr~~~~~~~~~ 228 (537)
++|.+++.++..+.+|.|.=-+.++.
T Consensus 169 sv~vIia~i~i~~~~w~~~Dpi~si~ 194 (296)
T COG1230 169 SVGVIIAAIVIRFTGWSWLDPILSIV 194 (296)
T ss_pred HHHHHHHHHHHHHhCCCccchHHHHH
Confidence 88888888888888998854444433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 537 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 2e-15 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 537 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.98 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.95 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.95 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.44 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.31 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.3 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.3 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.28 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.24 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.14 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-48 Score=391.66 Aligned_cols=432 Identities=21% Similarity=0.304 Sum_probs=345.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCC--------CCChhhHHHHHHHHHHhhhhhhhHHhhhhhh
Q psy4866 61 LFLFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPM--------SPNEGSWVVAIIEIGNYLSPIPAGMLVNRIG 132 (537)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G 132 (537)
..+.|.++++++++.+++|||.+.++..+|.+.+ +++. +..+.|++.+++.+|..+|++++|+++||+|
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~G 83 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNT---VFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFG 83 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHH---HHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3467888888899999999999999999998877 4432 2346789999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHH------------------HHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchh
Q psy4866 133 RKWSLLMTGPITTASWIIAM------------------YSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTI 194 (537)
Q Consensus 133 rr~~l~~~~~l~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 194 (537)
||++++++.+++.+++++++ +++|+++++++|+++|+|.|+..+....+++|+.|+++|++.
T Consensus 84 Rk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~ 163 (491)
T 4gc0_A 84 RRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKL 163 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhh
Confidence 99999999999999999998 588999999999999999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHHHHHHhhh------------hhHHHHHHHHHHHHHHHHHHhhcccCChHHHHHhCCHHHHHHHHHhh
Q psy4866 195 GTLFQISCHLGILYTYVLGSE------------LSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWL 262 (537)
Q Consensus 195 ~~~~~~~~~~G~~i~~~l~~~------------~~wr~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~ 262 (537)
.++.+.+..+|.++++.++.. ..||+.+.+..+..++..+..+++||||+|+..+++.+++.+.+++.
T Consensus 164 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~ 243 (491)
T 4gc0_A 164 VSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKI 243 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHh
Confidence 999999999999998887754 25889999888888888888899999999999999999999998887
Q ss_pred cCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ChhHHH
Q psy4866 263 RNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYIS 341 (537)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 341 (537)
..++..+ ++..+.++.....++.......+ ..++..+......+.++.+.+.+..|.+.+.+..+... ......
T Consensus 244 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (491)
T 4gc0_A 244 MGNTLAT--QAVQEIKHSLDHGRKTGGRLLMF---GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQT 318 (491)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHTTHHHHS---CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred cCCchhH--HHHHHHHHHHHhhhhhhhHHHHh---cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHH
Confidence 6543221 11111111111111111112222 22334555666667777788889999999888876653 233556
Q ss_pred HHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccc
Q psy4866 342 ILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPL 421 (537)
Q Consensus 342 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (537)
.+.++..+++.++++++.||+|||+.++.+.....++++.+....... ...+..++...++..++..++.++
T Consensus 319 ~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 390 (491)
T 4gc0_A 319 IIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ--------APGIVALLSMLFYVAAFAMSWGPV 390 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT--------CCHHHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc--------cchHHHHHHHHHHHHHHHhHHHHH
Confidence 677888999999999999999999999999888888877766543322 234455556666667777788888
Q ss_pred hhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH------hhccchhhhHhhHHHHHHHHHHHhhccCCCCCC
Q psy4866 422 FTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK------HIGMYSNFLFGGVSSLVCTVYLYYFLLETKGKT 495 (537)
Q Consensus 422 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (537)
.+.+.+|++|++.|+++.|+.+.++++++++++.+.+.+.+ ..+....|++++++++++.++.++++||||+|+
T Consensus 391 ~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~t 470 (491)
T 4gc0_A 391 CWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKT 470 (491)
T ss_dssp HHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence 88999999999999999999999999999999888776643 345566788899999999999999999999999
Q ss_pred HHHHHHHHhcCcc
Q psy4866 496 FNEIQYMFKYGKN 508 (537)
Q Consensus 496 ~~~~~~~~~~~~~ 508 (537)
+||+++.++++++
T Consensus 471 Leei~~~f~~~~~ 483 (491)
T 4gc0_A 471 LEELEALWEPETK 483 (491)
T ss_dssp HHHHGGGTC----
T ss_pred HHHHHHHhCCCCc
Confidence 9999887765443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-38 Score=315.50 Aligned_cols=394 Identities=11% Similarity=0.057 Sum_probs=292.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHH
Q psy4866 62 FLFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTG 141 (537)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~ 141 (537)
..++......+++.+..+++.....+.+|.+.+ ++ .+..+.|++.+++.++..++++++|+++||+|||++++++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 99 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVE---QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTS---ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH
Confidence 345566677777888889999999999999999 89 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH----HhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh--
Q psy4866 142 PITTASWIIAMY----SRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE-- 215 (537)
Q Consensus 142 ~l~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~-- 215 (537)
++.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.++++.+++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 179 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 179 (451)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999999999999999999999999999999999999999988865
Q ss_pred --hh-HHHHHHHHHHHHHHHH-HHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchH
Q psy4866 216 --LS-YMNYLTYSLIIPIIFT-VTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFR 291 (537)
Q Consensus 216 --~~-wr~~~~~~~~~~~~~~-~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (537)
.+ ||+.|++.+++.++.. +..+++||+|+....+.+.+ .. ++.+.+.++ ++..+....+...+
T Consensus 180 ~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~-~~~~~~~~~~~~~~ 246 (451)
T 1pw4_A 180 AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE-----------YK-NDYPDDYNE-KAEQELTAKQIFMQ 246 (451)
T ss_dssp HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT-----------TC-CC--------------CCTHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhh-----------hc-ccccccchh-hhhcccccccchHH
Confidence 47 9999999998877644 45567898875321111000 00 000000000 00000000011134
Q ss_pred HhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCCC-ChhHHHHHHHHHHHHHhhhHhhhhccc--CCcHH
Q psy4866 292 EFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRA--GRRVL 367 (537)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~ 367 (537)
+.++++..+. ..+..+........+..+.|.++++ .+.+. ..+....+..++.+++.++.+++.||+ ++|+.
T Consensus 247 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~ 322 (451)
T 1pw4_A 247 YVLPNKLLWY----IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 322 (451)
T ss_dssp HTSSCHHHHH----HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHcCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 4454443332 2233333333466677888988877 45542 344677778889999999999999999 99988
Q ss_pred HHHhhHHHH-HHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHH
Q psy4866 368 FLVSSAGCS-LFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILC 446 (537)
Q Consensus 368 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 446 (537)
+..+..+.. ++.+++.+. ...+.+...+..++.+.+.+. ..+....+..|.+|++.|+++.|+.+.+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 391 (451)
T 1pw4_A 323 TGVFFMTLVTIATIVYWMN----------PAGNPTVDMICMIVIGFLIYG-PVMLIGLHALELAPKKAAGTAAGFTGLFG 391 (451)
T ss_dssp HHHHHHHHHHHHHHHTTSC----------CTTCHHHHHHHHHHHHHHHTH-HHHHHHHHHHHTSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh----------cccCHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHhchhhhhhHHHHHHHHH
Confidence 877766655 443333221 011333344444445544443 33445588999999999999999999999
Q ss_pred HH-HHHHHHHHHHHHHHhhccchhhhHhhHHHHHHHHHHHhh
Q psy4866 447 TT-LGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYF 487 (537)
Q Consensus 447 ~~-g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 487 (537)
++ |.+++|.+.|.+.+..|+...|++.+++.+++.++.+..
T Consensus 392 ~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 392 YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99 999999999999999999888888888887777665443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-36 Score=297.49 Aligned_cols=359 Identities=12% Similarity=0.123 Sum_probs=276.6
Q ss_pred HHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHH
Q psy4866 68 CVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTAS 147 (537)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~ 147 (537)
...+++..+..+++.....+.+|.+.+ ++|++..+.|++.+++.++..++.+++|+++||+|||++++++.++.+++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~ 104 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQ---AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG 104 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHH
Confidence 344556677788888899999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHH---HHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhhhh-------
Q psy4866 148 WIIA---MYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELS------- 217 (537)
Q Consensus 148 ~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~~~------- 217 (537)
.+++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+.
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~ 184 (438)
T 3o7q_A 105 AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQ 184 (438)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCC
T ss_pred HHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999 888999999999999999999999999999999999999999999999999999999999987653
Q ss_pred -----------------------HHHHHHHHHHHHHHHHHHhhc--ccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHH
Q psy4866 218 -----------------------YMNYLTYSLIIPIIFTVTFMF--MPESPYFYAIKNQEGKAIESLKWLRNKTADQVQS 272 (537)
Q Consensus 218 -----------------------wr~~~~~~~~~~~~~~~~~~~--~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~ 272 (537)
||+.|++.+++.++..+..++ .||+++. .+.+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----------------~~~~------ 241 (438)
T 3o7q_A 185 SQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD-----------------NHSD------ 241 (438)
T ss_dssp CHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT-----------------CCCC------
T ss_pred cccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc-----------------cccc------
Confidence 999998877776654443333 4665410 0000
Q ss_pred HHHHHHHhhhhcccccchHHhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHhc-CCCC-ChhHHHHHHHHHHH
Q psy4866 273 ELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTI-FASS-ETFL-PSDYISILFAIILL 349 (537)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~-~~~~~~~~~~~~~~ 349 (537)
.++.+.+.+++++++++..+...+..++.. ........+.|.+ +++. +.+. ..+....+..++.+
T Consensus 242 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 309 (438)
T 3o7q_A 242 --------AKQGSFSASLSRLARIRHWRWAVLAQFCYV----GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFF 309 (438)
T ss_dssp --------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHH
T ss_pred --------ccccchhhhHHHHHhChHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHH
Confidence 001111344566666555444444333332 2355666788888 7766 5542 34567777888999
Q ss_pred HHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhcccc
Q psy4866 350 VSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEY 429 (537)
Q Consensus 350 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (537)
++.++.+++.||++||+.+..+.++..++.+++... ......+...+.+.+.+.. .+..+++..|.
T Consensus 310 ~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~ 375 (438)
T 3o7q_A 310 IGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-------------GGHVGLIALTLCSAFMSIQ-YPTIFSLGIKN 375 (438)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHTTH-HHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc-------------CCcHHHHHHHHHHHHHHHH-HHHHHHHHHhh
Confidence 999999999999999999988888777776655442 1222334445555555443 45666888899
Q ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhhHhhHHHHHH
Q psy4866 430 FSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG-MYSNFLFGGVSSLVC 480 (537)
Q Consensus 430 ~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~ 480 (537)
+|++ ++.+.++.. ...+|++++|.+.|.+.+..| +...|.+.+++.++.
T Consensus 376 ~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 376 LGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp CGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred cccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 9977 888888877 678999999999999999999 887777655544443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-31 Score=267.24 Aligned_cols=386 Identities=12% Similarity=0.050 Sum_probs=247.7
Q ss_pred CCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhh-hhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhh
Q psy4866 98 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR-IGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYV 176 (537)
Q Consensus 98 ~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 176 (537)
|+|.+..+.+++.+++.++..++++++|+++|| +|||+++.++.++.+++.+++++++|++.++++|+++|++.+...+
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 127 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKP 127 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccc
Confidence 499999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCcc--cchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhhcc-cCCh----HH
Q psy4866 177 ISPMYLGEISETSI--RGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFMFM-PESP----YF 245 (537)
Q Consensus 177 ~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~~~~~~~~~~~~-~esp----~~ 245 (537)
...+++.|++|+++ |+.++++++.+.++|..++|.+++. .+||+.|++.++..++..+..++. |+.. +.
T Consensus 128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (491)
T 4aps_A 128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLR 207 (491)
T ss_dssp HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSC
T ss_pred hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccC
Confidence 99999999999988 7778888899999999999888876 489999999877766655443322 2110 00
Q ss_pred HHHhCCHHHHHHHHHh----------------hcCCChhhHHHHHH-HHH---H----hhhhcccccchHHhhccchHHH
Q psy4866 246 YAIKNQEGKAIESLKW----------------LRNKTADQVQSELQ-IIK---Q----NTSKNVERTNFREFMGRSNMKA 301 (537)
Q Consensus 246 l~~~~~~~~a~~~~~~----------------~~~~~~~~~~~~~~-~~~---~----~~~~~~~~~~~~~~~~~~~~~~ 301 (537)
...+.+.++.++..++ ..+..+.+...... ... . ....+..+....+..+......
T Consensus 208 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (491)
T 4aps_A 208 PTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIP 287 (491)
T ss_dssp CSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHH
T ss_pred CCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 0001112222222211 11111101000000 000 0 0000000000000000111111
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCC-CChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHH-----HhhHH
Q psy4866 302 FVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETF-LPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFL-----VSSAG 374 (537)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-----~~~~~ 374 (537)
..+...+... .+.....+.+.+.++. +.+ ...+....+..+..+++.++.+++.||++||+... .+..+
T Consensus 288 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 288 LFIAAVLFWA----IEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHH----HHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 1212222222 1233344555565553 333 34556667778888889999999999999986654 55555
Q ss_pred HHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHH
Q psy4866 375 CSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISY 454 (537)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 454 (537)
.+++++++........ .+.+.+.+...+..++.+.+.+. ..+..+.++.|.+|++.|+++.|+.+...++|.++++
T Consensus 364 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~ 439 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG---TSGKVSPLWLVGSWALVILGEML-ISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNA 439 (491)
T ss_dssp HHHHHTTTHHHHHHCC---CCTTCCTHHHHHHHHHHHHHHHT-TTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC---CCCCccHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554444221100 00112334444555555555544 3455678999999999999999999999999999999
Q ss_pred HHHHHHHHhhccchhhhHhhHHHHHHHHHHHhhccCCC
Q psy4866 455 KLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFLLETK 492 (537)
Q Consensus 455 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (537)
.+.+.+.+. ++...|.+.+++++++.++.+.+.++.+
T Consensus 440 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 440 QLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887664 6677788888888877777666555443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-32 Score=268.22 Aligned_cols=351 Identities=13% Similarity=0.118 Sum_probs=261.0
Q ss_pred HHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHH
Q psy4866 69 VTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASW 148 (537)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~ 148 (537)
+.+++..+..+++.....+.+|.+.+ ++|.+..+.+++.+++.++..++.+++|+++||+|||++++++.++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 79 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMAR---DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 44566677788888889999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----hhHHHHHHH
Q psy4866 149 IIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTY 224 (537)
Q Consensus 149 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----~~wr~~~~~ 224 (537)
++.+++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++. .+||+.|++
T Consensus 80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999876 489999999
Q ss_pred HHHHHHHHHH-HhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHH
Q psy4866 225 SLIIPIIFTV-TFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFV 303 (537)
Q Consensus 225 ~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (537)
.++..++..+ ..+++||+|+.. .++++.+.++++.++++..+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 205 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPVD----------------------------------APRTRLLTSYKTLFGNSGFNCYL 205 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTTT----------------------------------CCCCCTTTCSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcccCCCC----------------------------------cccccHHHHHHHHhcCcchHHHH
Confidence 8888877665 556678875210 00011133445555544433333
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCC-CChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHH-HHHHHH
Q psy4866 304 FMAFLAVFRAFTGVQSIIAYANTIFAS-SETF-LPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAG-CSLFSF 380 (537)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~ 380 (537)
+...+ ..........+.|.++++ .+.+ ...+.......++.+++.++.+++.||.+++ ...+... ...+..
T Consensus 206 ~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~ 279 (375)
T 2gfp_A 206 LMLIG----GLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLL 279 (375)
T ss_dssp HHHHH----HHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSS
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 33222 223345556666666555 3333 1344666677888899999999999998872 2222222 222221
Q ss_pred HHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy4866 381 IAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLM 460 (537)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 460 (537)
.+...... ..+.+.......+.+.+.+.. .+....+..|..| ++|+++.|+.+...++|.+++|.+.|.+
T Consensus 280 ~~~~~~~~--------~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l 349 (375)
T 2gfp_A 280 MWIPDWFG--------VMNVWTLLVPAALFFFGAGML-FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAML 349 (375)
T ss_dssp SSHHHHHH--------HHHHHHHHHHHHHHHHHHHHT-SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHH
T ss_pred HHHHhhhc--------cccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111100 012333444555566665554 4555688999998 7899999999999999999999999999
Q ss_pred HHhhccchhhhH
Q psy4866 461 DKHIGMYSNFLF 472 (537)
Q Consensus 461 ~~~~g~~~~~~~ 472 (537)
.+..++...+.+
T Consensus 350 ~~~~~~~~~~~~ 361 (375)
T 2gfp_A 350 PQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHHHHHHH
T ss_pred hcCCcccHHHHH
Confidence 887666654443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.4e-30 Score=252.10 Aligned_cols=366 Identities=12% Similarity=0.054 Sum_probs=226.5
Q ss_pred hccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHH---HHHHHhhH-
Q psy4866 82 FAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWI---IAMYSRSV- 157 (537)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~---~~~~~~~~- 157 (537)
.+...+.+|.+.++ ++|+|..+.|++.+++.++..++++++|+++||+|||++++++..+++++.. ...+++..
T Consensus 23 ~~~~~~~~~~~l~~--~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (417)
T 2cfq_A 23 MGAYFPFFPIWLHD--INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQ 100 (417)
T ss_dssp HHHHTTTHHHHHHT--TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667665442 6899999999999999999999999999999999999999998887755321 12233222
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhhhccCCC--cccchhhhHhHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHH
Q psy4866 158 LGLYVMRTLQGFSMAAIYVISPMYLGEISET--SIRGTIGTLFQISCHLGILYTYVLGSE---LSYMNYLTYSLIIPIIF 232 (537)
Q Consensus 158 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~i~~~l~~~---~~wr~~~~~~~~~~~~~ 232 (537)
..++.++++.|++.+...+.....+.++.++ ++|+...+....+..+|..++|.+++. .+||+.|++.++..++.
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~ 180 (417)
T 2cfq_A 101 YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALIL 180 (417)
T ss_dssp TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 1234566666666655555555555555443 345666677666667777777777655 37999999877776555
Q ss_pred HHHhhccc-CChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHHHHHHHHHH
Q psy4866 233 TVTFMFMP-ESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVF 311 (537)
Q Consensus 233 ~~~~~~~~-esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (537)
.+..++.+ |+|+. .+.+ +.. + ..+++.....++++++++..+...+.......
T Consensus 181 ~~~~~~~~~~~~~~----~~~~----------~~~--~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (417)
T 2cfq_A 181 AVLLFFAKTDAPSS----ATVA----------NAV--G----------ANHSAFSLKLALELFRQPKLWFLSLYVIGVSC 234 (417)
T ss_dssp HHHSCSSCCCCSCS----SCSS----------SSS--S----------SCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccccc----cccc----------ccc--c----------cccccccHHHHHHHhcCCchhhHHHHHHHHHH
Confidence 55555444 43210 0000 000 0 00000011223445554443333322221111
Q ss_pred HHhhhHHHHHHHHHHHHHhcCCC----C-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHH
Q psy4866 312 RAFTGVQSIIAYANTIFASSETF----L-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYY 386 (537)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (537)
.+.....+.|.++.+.... . ..+....+..++.+++.++.++++||++||+.+..+..+.++..+.+.+.
T Consensus 235 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~- 309 (417)
T 2cfq_A 235 ----TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA- 309 (417)
T ss_dssp ----HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred ----HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-
Confidence 1223334456665443111 0 11244455567778899999999999999999887777766654444221
Q ss_pred HhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHH-HHHHHHHHHHHHHHHHHHHHhhc
Q psy4866 387 YVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVI-NILCTTLGLISYKLFFLMDKHIG 465 (537)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~g~l~~~~g 465 (537)
.+.+..++...+.+.+... ..+..+.+..|.+|++.||++.++. +...++|++++|.+.|.+.+..|
T Consensus 310 -----------~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g 377 (417)
T 2cfq_A 310 -----------TSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG 377 (417)
T ss_dssp -----------CSHHHHHHHTTHHHHHHHH-HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH
T ss_pred -----------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC
Confidence 1222333333333333322 2233457899999999999999994 88888999999999999999888
Q ss_pred cchhhhHhhHHHHHHHHHHHhhccCCC
Q psy4866 466 MYSNFLFGGVSSLVCTVYLYYFLLETK 492 (537)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (537)
+...|.+.+++++++.++.+...++++
T Consensus 378 ~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 378 FQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 888888888888887776655555443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-27 Score=241.06 Aligned_cols=400 Identities=12% Similarity=0.057 Sum_probs=224.6
Q ss_pred chhhHH-hhhcCCCCCC------CCCChhhHHHHHHHHHHhhhhhhhHHhhhhh-hhhHHHHHHHHHHHHHHHHHHHHh-
Q psy4866 85 SAPVLE-ELLSKESPIP------MSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI-GRKWSLLMTGPITTASWIIAMYSR- 155 (537)
Q Consensus 85 ~~~~~~-~~~~~~~~~~------~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~l~~~~~~~~~~~~- 155 (537)
..+.++ .+.+ ++| .+..+.+++.+++.++..++.+++|+++||+ |||+++.++.++.+++.+++++++
T Consensus 31 ~~~~l~~~l~~---~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~ 107 (524)
T 2xut_A 31 MRNILTPFLMT---ALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEH 107 (524)
T ss_dssp HHHHHHHHHHH---SCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHH---HhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444 4556 788 9999999999999999999999999999999 999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhH---hHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHH
Q psy4866 156 SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTL---FQISCHLGILYTYVLGSE----LSYMNYLTYSLII 228 (537)
Q Consensus 156 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~ 228 (537)
+++.++++|++.|++.+...+...+++.|++|+++|+++.+. ...+.++|.+++|.+++. .+||+.|++.+++
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~ 187 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVL 187 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999877666 888999999999988765 3899999998888
Q ss_pred HHHHHHHhhcc-cCChHHHHHhCCHHHHHHHHH-hhcCCChh-hHHHHHHHHHHh-------------------------
Q psy4866 229 PIIFTVTFMFM-PESPYFYAIKNQEGKAIESLK-WLRNKTAD-QVQSELQIIKQN------------------------- 280 (537)
Q Consensus 229 ~~~~~~~~~~~-~esp~~l~~~~~~~~a~~~~~-~~~~~~~~-~~~~~~~~~~~~------------------------- 280 (537)
.++..+..++. ++.++-..++.+..+..+.+. ..++.... +......+....
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (524)
T 2xut_A 188 MFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVL 267 (524)
T ss_dssp HHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhh
Confidence 76655544432 211100000000001101000 01111100 000000000000
Q ss_pred hhhcccccchHH------------hhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHH
Q psy4866 281 TSKNVERTNFRE------------FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL--PSDYISILFAI 346 (537)
Q Consensus 281 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 346 (537)
..+.+.+.++++ ..+++.............. .+..+.....+.+.+....+... ..........+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (524)
T 2xut_A 268 VMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTP-FWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPL 346 (524)
T ss_dssp HHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHH-HHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGG
T ss_pred hhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHH-HHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHH
Confidence 000000011100 0001111111111111111 11111111112222222222211 23333333444
Q ss_pred HHHHHhhhHhhhh----cccCC----cHHHHHhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhcc
Q psy4866 347 ILLVSIFPSTYYI----DRAGR----RVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGF 418 (537)
Q Consensus 347 ~~~~~~~~~g~l~----d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (537)
+.+++.++.+++. +|.++ ++.+..+.++.+++++++........ .+...+.+..++..++.+.+.+. .
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~g~~~~~-~ 422 (524)
T 2xut_A 347 LVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMD---GGSALSIFWQILPYALLTFGEVL-V 422 (524)
T ss_dssp GHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTT---TTCCCCSHHHHHHHHHHHHHHHH-H
T ss_pred HHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCcCHHHHHHHHHHHHHHHHH-H
Confidence 5555555565553 44432 23455555555555444332100000 00012333444445555555544 3
Q ss_pred ccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhh----------cc-chhhhHhhHHHHHHHHHHHhh
Q psy4866 419 GPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHI----------GM-YSNFLFGGVSSLVCTVYLYYF 487 (537)
Q Consensus 419 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------g~-~~~~~~~~~~~~~~~~~~~~~ 487 (537)
.+....+..|..|++.||+++|+.+...++|.+++|.+.+.+.+.. +. ...|++.+++++++.++.+++
T Consensus 423 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (524)
T 2xut_A 423 SATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALY 502 (524)
T ss_dssp HHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 4556688999999999999999999999999999999999887632 11 122666666666666655555
Q ss_pred ccCCC
Q psy4866 488 LLETK 492 (537)
Q Consensus 488 ~~~~~ 492 (537)
.++.+
T Consensus 503 ~~~~~ 507 (524)
T 2xut_A 503 ARSYQ 507 (524)
T ss_dssp -----
T ss_pred HHHhc
Confidence 44443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-12 Score=129.86 Aligned_cols=157 Identities=10% Similarity=0.040 Sum_probs=131.2
Q ss_pred hhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhh--hhhHHHHHHHHHHH-HHHHHHHHH--h
Q psy4866 81 SFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI--GRKWSLLMTGPITT-ASWIIAMYS--R 155 (537)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~--Grr~~l~~~~~l~~-~~~~~~~~~--~ 155 (537)
........+|.+.++ .+|.+..+.+++.+...++..++.++.|++.||+ |||+.+.++.++.. ++.++..+. .
T Consensus 267 ~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (451)
T 1pw4_A 267 LRYGILDWSPTYLKE--VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAG 344 (451)
T ss_dssp HHHHHHHHHHHHBTT--BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhccc
Confidence 333455667777772 3899999999999999999999999999999999 99999888877766 666666665 3
Q ss_pred hHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHH-HHHHHHHHhhhh----hHHHHHHHHHHHHH
Q psy4866 156 SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHL-GILYTYVLGSEL----SYMNYLTYSLIIPI 230 (537)
Q Consensus 156 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~i~~~l~~~~----~wr~~~~~~~~~~~ 230 (537)
+.+.+.+.-++.|++.+...+....++.|.+|+++|+++.++.+....+ |..+++.+.+.+ +|+..|++.+++.+
T Consensus 345 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 424 (451)
T 1pw4_A 345 NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSI 424 (451)
T ss_dssp CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 6778888899999999999998899999999999999999999999999 999999887663 78999999888877
Q ss_pred HHHHHhhcc
Q psy4866 231 IFTVTFMFM 239 (537)
Q Consensus 231 ~~~~~~~~~ 239 (537)
+..+..+++
T Consensus 425 ~~~~~~~~~ 433 (451)
T 1pw4_A 425 LAVILLIVV 433 (451)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766555543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=6.8e-12 Score=123.13 Aligned_cols=141 Identities=21% Similarity=0.284 Sum_probs=116.0
Q ss_pred CChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhh
Q psy4866 103 PNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYL 182 (537)
Q Consensus 103 ~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 182 (537)
....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568888888889999999999999999999999999988888877777778888888888888988777777788899
Q ss_pred hccCCCcccchhhhH-hHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHH-hhcccCCh
Q psy4866 183 GEISETSIRGTIGTL-FQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVT-FMFMPESP 243 (537)
Q Consensus 183 ~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~~~~~~~~-~~~~~esp 243 (537)
.|.+|++.|+.+.++ ++.+..+|.+++|.+++. .+++..|.+.+++.++..+. +++.||.+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999999888 477778888888887765 36788888888877765544 44456553
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.8e-11 Score=117.99 Aligned_cols=162 Identities=4% Similarity=-0.082 Sum_probs=122.9
Q ss_pred HhhhHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhc
Q psy4866 313 AFTGVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIE 391 (537)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (537)
............|.+.++.+.+. +.++......++..++.++.|+++||+|||+.+..+.++.+++.++......
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---- 113 (438)
T 3o7q_A 38 WAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE---- 113 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc----
Confidence 33334566677788878877764 3457778888999999999999999999999999999998888877732211
Q ss_pred cccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH-Hhhc-----
Q psy4866 392 LQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMD-KHIG----- 465 (537)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~-~~~g----- 465 (537)
..+.+..++..++.+.+.+... +...+++.|.+|+++|+.++++.+....+|..++|.+.+.+. +..+
T Consensus 114 -----~~~~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~ 187 (438)
T 3o7q_A 114 -----IMNYTLFLVGLFIIAAGLGCLE-TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQD 187 (438)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHH
T ss_pred -----cccHHHHHHHHHHHHhhHHHhh-hhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 1344555666666666666544 445699999999999999999999999999999999999998 4444
Q ss_pred --------------------cchhhhHhhHHHHHHHHHH
Q psy4866 466 --------------------MYSNFLFGGVSSLVCTVYL 484 (537)
Q Consensus 466 --------------------~~~~~~~~~~~~~~~~~~~ 484 (537)
|++.|++.+++.++..++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 188 VLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLI 226 (438)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 6777776666665555443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.2e-11 Score=120.36 Aligned_cols=158 Identities=13% Similarity=0.108 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHh------cCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcc-cCCcHHHHHhhHHHHHHHHHHHHHHHh
Q psy4866 317 VQSIIAYANTIFAS------SETFL-PSDYISILFAIILLVSIFPSTYYIDR-AGRRVLFLVSSAGCSLFSFIAGLYYYV 388 (537)
Q Consensus 317 ~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (537)
++....+++.++.+ .+.+. ..++......++..++.++.|+++|| +|||+.+..+.++..++.+++.+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~---- 104 (491)
T 4aps_A 29 YYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL---- 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH----
Confidence 45555666666655 45442 34577788889999999999999999 89999999999888888776654
Q ss_pred hhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy4866 389 TIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNM--KAVSCAVINILCTTLGLISYKLFFLMDKHIGM 466 (537)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 466 (537)
..+.+..++..++.+.+.+.. .+...+++.|.+|++. |+.+.++.+...++|..++|.+.+.+.+..||
T Consensus 105 --------~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~ 175 (491)
T 4aps_A 105 --------PFGASALFGSIILIIIGTGFL-KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGY 175 (491)
T ss_dssp --------CCSTTHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred --------hhhHHHHHHHHHHHHHHHHhc-cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 234455555666666665554 3556689999999988 77788889999999999999999999999999
Q ss_pred chhhhHhhHHHHHHHHHHHhh
Q psy4866 467 YSNFLFGGVSSLVCTVYLYYF 487 (537)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~ 487 (537)
+..|++.++..+++.++.+..
T Consensus 176 ~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 176 HVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999988877777666655443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.28 E-value=6e-12 Score=121.74 Aligned_cols=164 Identities=16% Similarity=0.069 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHHHHHHHHHHHhhhcccc
Q psy4866 316 GVQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQY 394 (537)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (537)
.........|.+.++.+.+. ..+.......++..++.++.|+++||+|||+.+..+..+..++.++....
T Consensus 15 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------- 85 (375)
T 2gfp_A 15 AQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--------- 85 (375)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh---------
Confidence 34555666677777766653 34477778889999999999999999999999999998888888777653
Q ss_pred CCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHhh
Q psy4866 395 EIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGG 474 (537)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 474 (537)
++.+..++..++.+.+.+. ..+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..||+..+.+.+
T Consensus 86 ---~~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (375)
T 2gfp_A 86 ---SSLTVLIAASAMQGMGTGV-GGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLL 161 (375)
T ss_dssp ---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred ---ccHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHH
Confidence 2334444555555555544 345566899999999999999999999999999999999999988889998888877
Q ss_pred HHHHHHHHHHHhhccCCC
Q psy4866 475 VSSLVCTVYLYYFLLETK 492 (537)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~ 492 (537)
++.++..+......||++
T Consensus 162 ~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 162 VLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHHHHCcccC
Confidence 777766654445555543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-10 Score=117.45 Aligned_cols=157 Identities=13% Similarity=0.105 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHh-cC------CC-CChhHHHHHHHHHHHHHhhhHhhhhccc-CCcHHHHHhhHHHHHHHHHHHHHHH
Q psy4866 317 VQSIIAYANTIFAS-SE------TF-LPSDYISILFAIILLVSIFPSTYYIDRA-GRRVLFLVSSAGCSLFSFIAGLYYY 387 (537)
Q Consensus 317 ~~~~~~~~~~~~~~-~~------~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (537)
++....+++.++.+ .+ .+ ...+.......++..++.++.|+++||+ |||+.+..+.++.+++.+++.+.
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-- 105 (524)
T 2xut_A 28 FYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-- 105 (524)
T ss_dssp HHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh--
Confidence 44555666666654 45 44 3455778888899999999999999999 99999999988888887776652
Q ss_pred hhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHH---HHHHHHHHHHHHHHHHHHHHHhh
Q psy4866 388 VTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAV---INILCTTLGLISYKLFFLMDKHI 464 (537)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~~~~g~l~~~~ 464 (537)
+.+.+..++..++.+.+.+. ..+...+++.|.+|+++|+++.+. .+...++|.+++|.+.+.+.+..
T Consensus 106 ---------~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 175 (524)
T 2xut_A 106 ---------EHSVQGFYTGLFLIALGSGG-IKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF 175 (524)
T ss_dssp ---------SSCHHHHHHHHHHHHHHHHT-THHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS
T ss_pred ---------cccHHHHHHHHHHHHHhccc-cchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 11344445555555665554 345566899999999999876666 88899999999999999999988
Q ss_pred ccchhhhHhhHHHHHHHHHHH
Q psy4866 465 GMYSNFLFGGVSSLVCTVYLY 485 (537)
Q Consensus 465 g~~~~~~~~~~~~~~~~~~~~ 485 (537)
||+..|.+.+++.+++.++.+
T Consensus 176 g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 176 GAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 999888888777666655543
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.5e-10 Score=114.62 Aligned_cols=154 Identities=14% Similarity=0.078 Sum_probs=109.7
Q ss_pred chhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHh-----hHHH
Q psy4866 85 SAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR-----SVLG 159 (537)
Q Consensus 85 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~-----~~~~ 159 (537)
.....|.+.+ ..+.+............+...++.++.+++.||+|||+.++.+.....++.+..+... +...
T Consensus 296 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 372 (491)
T 4gc0_A 296 VLYYAPEVFK---TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA 372 (491)
T ss_dssp HHHHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHhcchHHHH---hcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHH
Confidence 3334566666 6677777777778888889999999999999999999999999888887776655432 1112
Q ss_pred HHH-HHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh----------hhHHHHHHHHHHH
Q psy4866 160 LYV-MRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----------LSYMNYLTYSLII 228 (537)
Q Consensus 160 l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----------~~wr~~~~~~~~~ 228 (537)
++. .-+..+++ ....+....+.+|.+|.+.|+.++++......+|.++++.+... .++.+.|++.+++
T Consensus 373 ~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~ 451 (491)
T 4gc0_A 373 LLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCM 451 (491)
T ss_dssp HHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 222 22222222 23346677899999999999999999998888888887655433 2344567777777
Q ss_pred HHHHH-HHhhcccCC
Q psy4866 229 PIIFT-VTFMFMPES 242 (537)
Q Consensus 229 ~~~~~-~~~~~~~es 242 (537)
+++.. +.++++|||
T Consensus 452 ~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 452 GVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHheecCC
Confidence 76654 456779999
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 537 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 9e-13 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 3e-06 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 67.8 bits (164), Expect = 9e-13
Identities = 46/442 (10%), Positives = 115/442 (26%), Gaps = 33/442 (7%)
Query: 66 FLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAG 125
A + +FA + P L E S + + ++ I I S G
Sbjct: 28 LGIFFGYAAYYLVRKNFALAMPYLVEQG-------FSRGDLGFALSGISIAYGFSKFIMG 80
Query: 126 MLVNRIGRKW----SLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMY 181
+ +R + L++ + + + S+ ++V+ L G+ +
Sbjct: 81 SVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRT 140
Query: 182 LGEISETSIRGTIGTLFQISCHLGILYTYVLGSE--LSYMNYLTYSLIIPIIFTVTFMFM 239
+ RG I +++ + ++G +L + ++ + + +F
Sbjct: 141 MVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFA 200
Query: 240 PESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNM 299
E + ++ + EL + + +
Sbjct: 201 FAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVF 260
Query: 300 KAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYI 359
+ L + A S + L+ + +
Sbjct: 261 VYLLRYGILDWSPTYLKEVKHFALDK-----------SSWAYFLYEYAGIPGTLLCGWMS 309
Query: 360 DRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFG 419
D+ R +L + +Y+ P + + ++ F G
Sbjct: 310 DKVFRGNRGATGVFFMTLVTIATIVYWM--------NPAGNPTVDMICMIVIGFLIYGPV 361
Query: 420 PLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFF-LMDKHIGMYSNFLFGGVSSL 478
L E + + G ++ G F+ S+
Sbjct: 362 MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSI 421
Query: 479 VCTVYLYYFLLETKGKTFNEIQ 500
+ + L ++ K + +Q
Sbjct: 422 LAVILLIVVMIGEKRRHEQLLQ 443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 47.5 bits (111), Expect = 3e-06
Identities = 52/440 (11%), Positives = 108/440 (24%), Gaps = 51/440 (11%)
Query: 72 CIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI 131
+ F P L +S ++ + A I + + L G+L +++
Sbjct: 13 GLFFFFYFFIMGAYFPFFPIWLHDI--NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL 70
Query: 132 GRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGF----------SMAAIYVISPMY 181
G + LL + L + + A V + +
Sbjct: 71 GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIE 130
Query: 182 LGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPE 241
G + LG ++ + + + S I+ + F +
Sbjct: 131 KVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTD 190
Query: 242 SPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKA 301
+P + N G + K + + ++
Sbjct: 191 APSSATVANAVGANHSAFSL---------------------KLALELFRQPKLWFLSLYV 229
Query: 302 FVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDR 361
VF +A + + +L A I+ + +
Sbjct: 230 IGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK 289
Query: 362 AGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPL 421
+ + S SF TS + + + L +F
Sbjct: 290 NALLLAGTIMSVRIIGSSFA-----------------TSALEVVILKTLHMFEVPFLLVG 332
Query: 422 FTPLLSEYFSSNMKAVSCAVINILCTTLG-LISYKLFFLMDKHIGMYSNFLFGGVSSLVC 480
++ F A V L + L M + IG +L G+ +L
Sbjct: 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGF 392
Query: 481 TVYLYYFLLETKGKTFNEIQ 500
T+ + L + Q
Sbjct: 393 TLISVFTLSGPGPLSLLRRQ 412
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 537 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.44 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.43 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-37 Score=307.31 Aligned_cols=398 Identities=12% Similarity=0.062 Sum_probs=277.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccchhhHHhhhcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHH
Q psy4866 62 FLFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTG 141 (537)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~ 141 (537)
+.+|.+...+.++.+...++...++.+.|.+. |+|+|.+|+|++.+++.+++.++++++|+++||+|||+++.++.
T Consensus 21 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~----~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~ 96 (447)
T d1pw4a_ 21 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV----EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL 96 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT----SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 34667777777778888878777888888764 57999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh----hHHHHHHHHHHHHhHhhhhhhhhhhhhhccCCCcccchhhhHhHHHHHHHHHHHHHHhhh--
Q psy4866 142 PITTASWIIAMYSR----SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE-- 215 (537)
Q Consensus 142 ~l~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~-- 215 (537)
++.+++.+++++++ +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~ 176 (447)
T d1pw4a_ 97 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 176 (447)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHh
Confidence 99999999988764 788999999999999999999999999999999999999999999999999998877654
Q ss_pred ---hhHHHHHHHHHHHHHHHH-HHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchH
Q psy4866 216 ---LSYMNYLTYSLIIPIIFT-VTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFR 291 (537)
Q Consensus 216 ---~~wr~~~~~~~~~~~~~~-~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (537)
.+||+.|++.+++.++.. +.+++++|+|+........+ .+.+..++. ..+.+.+....+...+
T Consensus 177 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~-~~~~~~~~~~~~~~~~ 243 (447)
T d1pw4a_ 177 AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE------------YKNDYPDDY-NEKAEQELTAKQIFMQ 243 (447)
T ss_dssp HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT------------TCCC--------------CCTHHHHH
T ss_pred hhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhh------------hhhhcccch-hhccccccchhhHHHH
Confidence 279999998888876654 44555666663211100000 000000000 0000111111122233
Q ss_pred HhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCCC-ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHH
Q psy4866 292 EFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASS-ETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFL 369 (537)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 369 (537)
..++++. ++......+......+....+.+.++.+. +.+. .......+..+..+++.++.|++.||++|++...
T Consensus 244 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 319 (447)
T d1pw4a_ 244 YVLPNKL----LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 319 (447)
T ss_dssp HTSSCHH----HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHcCch----HHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccccc
Confidence 3443333 22233333333334566777788877665 3332 3446677788899999999999999999876554
Q ss_pred HhhHHHHHHHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHH
Q psy4866 370 VSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTL 449 (537)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 449 (537)
.......+........... ...+.+...+..++.+.+.. +..+....+..|.+|++.||++.|+.+.+.+++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~ 391 (447)
T d1pw4a_ 320 TGVFFMTLVTIATIVYWMN-------PAGNPTVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLG 391 (447)
T ss_dssp HHHHHHHHHHHHHHHTTSC-------CTTCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhc-------ccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 4444333333332222111 11233344444444444433 334455688899999999999999999998875
Q ss_pred -HHHHHHHHHHHHHhhccchhhhHhhHHHHHHHHHHHhhc
Q psy4866 450 -GLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFL 488 (537)
Q Consensus 450 -~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 488 (537)
..++|.+.|.+.+..|+...+.+.+++++++.++.+.+.
T Consensus 392 g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 392 GSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp HHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 566799999999999999888888877777776665543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=5.4e-29 Score=242.86 Aligned_cols=378 Identities=11% Similarity=-0.004 Sum_probs=246.9
Q ss_pred hhhhhhhhccchhhHHhh-hcCCCCCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy4866 75 AFTTGMSFAWSAPVLEEL-LSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMY 153 (537)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~ 153 (537)
.|...+..+...|.+|.+ .+ ++|+|.+++|++.+++.++..++++++|+++||+|||++++++..+..++.++..+
T Consensus 16 ~f~~~~~~~~~~~~l~~~l~~---~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~ 92 (417)
T d1pv7a_ 16 FFFYFFIMGAYFPFFPIWLHD---INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFI 92 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 344445566677888874 55 78999999999999999999999999999999999999999999999999888888
Q ss_pred HhhHHHH----HHHHHHHHhHhhhhhhhhhhhhhccCCC--cccchhhhHhHHHHHHHHHHHHHHhhhh---hHHHHHHH
Q psy4866 154 SRSVLGL----YVMRTLQGFSMAAIYVISPMYLGEISET--SIRGTIGTLFQISCHLGILYTYVLGSEL---SYMNYLTY 224 (537)
Q Consensus 154 ~~~~~~l----~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~i~~~l~~~~---~wr~~~~~ 224 (537)
..+.... ++.+++.+.+.+...........+..++ +++....+........|..+++.+++.+ +|+..+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 172 (417)
T d1pv7a_ 93 FIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWL 172 (417)
T ss_dssp HTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccc
Confidence 7765554 3455555555554444444444443332 3345566677777777777877777653 55555555
Q ss_pred HHHHH-HHHHHHhhcccCChHHHHHhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHhhhhcccccchHHhhccchHHHHH
Q psy4866 225 SLIIP-IIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFV 303 (537)
Q Consensus 225 ~~~~~-~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (537)
..... ++..+..+..+|+|+.. +.. + .++...+........+..+.+..+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (417)
T d1pv7a_ 173 GSGCALILAVLLFFAKTDAPSSA-----------------TVA--N-------AVGANHSAFSLKLALELFRQPKLWFLS 226 (417)
T ss_dssp HHHHHHHHHHHHHSSCCCSCSSS-----------------CSS--H-------HHHSCCCCCCHHHHHHHTTSSHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcccccch-----------------hhh--h-------hhhhhcccccccccccccccccccchh
Confidence 55554 44555566677665210 000 0 000011111112222223333333322
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-----ChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHHH
Q psy4866 304 FMAFLAVFRAFTGVQSIIAYANTIFASSETFL-----PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLF 378 (537)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 378 (537)
......... ........+.+........ ..........++..++..+.+++.||.++|+.+..+..+.+++
T Consensus 227 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~ 302 (417)
T d1pv7a_ 227 LYVIGVSCT----YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVR 302 (417)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHH----HHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHh
Confidence 222222221 1122222222222221111 1224455567788889999999999999999999988888877
Q ss_pred HHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHH-HHHHHHHHHHHHHH
Q psy4866 379 SFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVIN-ILCTTLGLISYKLF 457 (537)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~~~~ 457 (537)
.+.+... .+.+...+...+.+.+.+... +...++..|.+|++.|+++.|+.. ....+|.+++|.+.
T Consensus 303 ~~~~~~~------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~ 369 (417)
T d1pv7a_ 303 IIGSSFA------------TSALEVVILKTLHMFEVPFLL-VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA 369 (417)
T ss_dssp HHHHHTC------------CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred hhccccc------------cccchhhHHHHHHHHHHHHHH-HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666542 344555555566666665544 455689999999999999999864 56679999999999
Q ss_pred HHHHHhhccchhhhHhhHHHHHHHHHHHhhccCCCCCCHHH
Q psy4866 458 FLMDKHIGMYSNFLFGGVSSLVCTVYLYYFLLETKGKTFNE 498 (537)
Q Consensus 458 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (537)
|++.|..|+...+++.++++++..++..+.+++++.....+
T Consensus 370 G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 370 GNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence 99999999999999999888888888777777666555543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=1.6e-13 Score=131.86 Aligned_cols=143 Identities=20% Similarity=0.247 Sum_probs=122.5
Q ss_pred CCCCCCChhhHHHHHHHHHHhhhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhh
Q psy4866 98 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVI 177 (537)
Q Consensus 98 ~~~~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 177 (537)
+.+.+....+...+...++..++..+.+++.||+|+|+++.++.++.+++.++..+.++.+.+++.-++.|++.+...+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 332 (417)
T d1pv7a_ 253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVG 332 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 34455667788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCcccchhhhHh-HHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHh-hccc
Q psy4866 178 SPMYLGEISETSIRGTIGTLF-QISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTF-MFMP 240 (537)
Q Consensus 178 ~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~i~~~l~~~----~~wr~~~~~~~~~~~~~~~~~-~~~~ 240 (537)
..+++.|.+|+++|+++.++. +....+|..++|.+++. +||+..|++.+++.++..++. +.++
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999974 55667888888777655 589999998888877655443 4443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=4e-13 Score=130.87 Aligned_cols=184 Identities=14% Similarity=0.128 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHHHHHhhhHhhhhcccCCcHHHHHhhHHHHH
Q psy4866 299 MKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETF-LPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSL 377 (537)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 377 (537)
+|..+...++.++..+.....+....|. +++.+.+ .+.++......++..++.++.|+++||+|||+.+..+.++.++
T Consensus 23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~ 101 (447)
T d1pw4a_ 23 RWQIFLGIFFGYAAYYLVRKNFALAMPY-LVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 101 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHH-TTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 3444444444333332222233444454 3556665 3566888889999999999999999999999999999998888
Q ss_pred HHHHHHHHHHhhhccccCCcccchhhHHHHHHHHHHHhhccccchhhhccccCCccccchhhHHHHHHHHHHHHHHHHHH
Q psy4866 378 FSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLF 457 (537)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 457 (537)
+.++.++..... ...+..++..++.+.+.+... +....++.|.+|+++|++++++.+....+|..+++.+.
T Consensus 102 ~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~ 172 (447)
T d1pw4a_ 102 VMLFMGFVPWAT--------SSIAVMFVLLFLCGWFQGMGW-PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 172 (447)
T ss_dssp HHHHHHHCHHHH--------SSSSHHHHHHHHHHHHHHHTH-HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHhhccccchhh--------hhHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHhhcccccccccccccchhhhhhhhhh
Confidence 877776542221 234445555556666655544 44558999999999999999999999999999999988
Q ss_pred HHHHHhh-ccchhhhHhhHHHHHHHHHHHhhccCCC
Q psy4866 458 FLMDKHI-GMYSNFLFGGVSSLVCTVYLYYFLLETK 492 (537)
Q Consensus 458 g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (537)
+.+.+.. +|+..+++.+.+.++..++.+.+.++.+
T Consensus 173 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (447)
T d1pw4a_ 173 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP 208 (447)
T ss_dssp HHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred hhHhhhhhcccccchhhhhhHHHHHHHHHHhcccch
Confidence 8877755 6777888888777777777666665544
|