Psyllid ID: psy4903

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70---
Protein Sequence
MKFKMKFSSGENRTREQALMFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET
Secondary Structure (PSIPRED)
ccEEEEEEccccccccEEEEEEEccccEEEEEccccccEEEEEcccccccEEEEEccccEEEEEEccccEEcc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccccccEEEEEcccHEEEEccccccccEEEcHccccccEEEEEEEccEEEEEcccccEccc
Coil and Loop (DISEMBL)
mkfkmkfssgenrtREQALMFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET
Flexible Loop (DISEMBL)
mkfkmkfssgenrtreQALMFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET
Low Complexity Region (SEG)
MKFKMKFSSGENRTREQALMFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET
Disordered region (IsUnstruct)
******************LMFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI**
Disordered Region (DISOPRED)
***********NRTREQALMFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE*
Disordered Region (DISEMBL)
************RTREQALMFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET
Disordered Region (DISPRO)
*KF**KFS**ENRTREQALMFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI*T
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKFKMKFSSGENRTREQALMFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	73	2.2.26 [Sep-21-2011]
Q04833	4753	Low-density lipoprotein r	yes	N/A	0.698	0.010	0.333	0.0003
P98163	1984	Putative vitellogenin rec	no	N/A	0.794	0.029	0.344	0.0009

>sp|Q04833|LRP_CAEEL Low-density lipoprotein receptor-related protein OS=Caenorhabditis elegans GN=lrp-1 PE=1 SV=1

 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 33/54 (61%)

Query: 20  MFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
           MF  +  ++    MDGT   ++V+   ++ SG+ +DI AKR++W D  +D +E+
Sbjct: 528 MFFTNQLKLEAAAMDGTNRRTLVNTHTHQVSGIVVDITAKRVYWVDPKVDRLES 581

May act as a receptor for the endocytosis of extracellular ligands such as chylomicron remnants, protease-inhibitor complexes and vitellogenin.
Caenorhabditis elegans (taxid: 6239)

>sp|P98163|YL_DROME Putative vitellogenin receptor OS=Drosophila melanogaster GN=yl PE=1 SV=2

 Score = 42.4 bits (98), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 3/61 (4%)

Query: 16  EQALMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
           ++ LMF  D  +   I R +MDG+ +  IVS+     +G+ALD++ +R++W D  L  ++
Sbjct: 527 QKGLMFWTDWGEKPMIGRASMDGSRSRPIVSDNIEWPNGIALDMHQQRIYWVDAKLGSVQ 586

Query: 73  T 73
           T
Sbjct: 587 T 587

Involved in uptake of vitellogenin by endocytosis.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
307208125	4539	Low-density lipoprotein receptor-related	0.780	0.012	0.736	2e-18
332024241	4558	Low-density lipoprotein receptor-related	0.780	0.012	0.719	5e-18
307171853	4578	Low-density lipoprotein receptor-related	0.780	0.012	0.719	6e-18
270015974	2145	hypothetical protein TcasGA2_TC004414 [T	0.739	0.025	0.777	7e-18
195446934	4521	GK25553 [Drosophila willistoni] gi|19416	0.767	0.012	0.75	3e-17
383859306	4572	PREDICTED: low-density lipoprotein recep	0.767	0.012	0.696	4e-17
312381670	4689	hypothetical protein AND_05975 [Anophele	0.767	0.011	0.732	5e-17
157124457	4525	low-density lipoprotein receptor (ldl) [	0.767	0.012	0.732	5e-17
281360654	4769	megalin, isoform A [Drosophila melanogas	0.767	0.011	0.732	8e-17
198471567	4543	GA11430 [Drosophila pseudoobscura pseudo	0.767	0.012	0.732	8e-17

>gi|307208125|gb|EFN85629.1| Low-density lipoprotein receptor-related protein 2 [Harpegnathos saltator]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/57 (73%), Positives = 50/57 (87%)

Query: 17  QALMFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
           + LMF+ADS Q+LRTNMDGT A  +VSEAAYK SGVA+DI AKR++WCD+LLDYIET
Sbjct: 438 RGLMFIADSKQVLRTNMDGTNAFPVVSEAAYKVSGVAVDIIAKRIYWCDSLLDYIET 494

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024241|gb|EGI64445.1| Low-density lipoprotein receptor-related protein 2 [Acromyrmex echinatior]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/57 (71%), Positives = 50/57 (87%)

Query: 17  QALMFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
           + LMF+ADS Q+LRTNMDGT A  +VS+AAYK SGVA+DI AKR++WCD+LLDYIET
Sbjct: 459 KGLMFIADSKQVLRTNMDGTNAFPVVSQAAYKVSGVAVDIIAKRIYWCDSLLDYIET 515

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307171853|gb|EFN63508.1| Low-density lipoprotein receptor-related protein 2 [Camponotus floridanus]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/57 (71%), Positives = 50/57 (87%)

Query: 17  QALMFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
           + +MF+ADS Q+LRTNMDGT A  +VSEAAYK SGVA+DI AKR++WCD+LLDYIET
Sbjct: 469 RGVMFIADSKQVLRTNMDGTNAFPVVSEAAYKVSGVAVDIIAKRIYWCDSLLDYIET 525

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270015974|gb|EFA12422.1| hypothetical protein TcasGA2_TC004414 [Tribolium castaneum]

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/54 (77%), Positives = 50/54 (92%)

Query: 20  MFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
           +FVADS+Q+LR NMDGT A +IVSEAAYKASG+A+DI AKR+FWCD+LLDYIET
Sbjct: 476 LFVADSSQVLRANMDGTNAHAIVSEAAYKASGIAVDIIAKRVFWCDSLLDYIET 529

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195446934|ref|XP_002070989.1| GK25553 [Drosophila willistoni] gi|194167074|gb|EDW81975.1| GK25553 [Drosophila willistoni]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/56 (75%), Positives = 48/56 (85%)

Query: 18  ALMFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
            LMFVAD  Q+LR +MDGT A SIVSEAAYKASGV +DI AKR+FWCD+LLDYIE+
Sbjct: 393 GLMFVADGGQVLRAHMDGTHARSIVSEAAYKASGVTVDIIAKRVFWCDSLLDYIES 448

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859306|ref|XP_003705136.1| PREDICTED: low-density lipoprotein receptor-related protein 2-like [Megachile rotundata]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/56 (69%), Positives = 48/56 (85%)

Query: 18  ALMFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
            LMFVADS Q+LR NMDGT+A  +VSEAAYK SG+A+D+ A+R+FWCD+ LDYIET
Sbjct: 525 GLMFVADSKQVLRANMDGTVAFPVVSEAAYKVSGIAVDVIARRIFWCDSQLDYIET 580

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312381670|gb|EFR27366.1| hypothetical protein AND_05975 [Anopheles darlingi]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/56 (73%), Positives = 49/56 (87%)

Query: 18  ALMFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
            LMFVAD + +LR +MDGT A SIVSEAAYKASGVA+D+ AKR+FWCD+LLDYIE+
Sbjct: 505 GLMFVADGSHVLRAHMDGTHAKSIVSEAAYKASGVAVDVIAKRVFWCDSLLDYIES 560

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157124457|ref|XP_001660469.1| low-density lipoprotein receptor (ldl) [Aedes aegypti] gi|108873980|gb|EAT38205.1| AAEL009869-PA [Aedes aegypti]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/56 (73%), Positives = 49/56 (87%)

Query: 18  ALMFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
            LMFVAD + +LR +MDGT A SIVSEAAYKASGVA+D+ AKR+FWCD+LLDYIE+
Sbjct: 405 GLMFVADGSHVLRAHMDGTHAKSIVSEAAYKASGVAVDVIAKRVFWCDSLLDYIES 460

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|281360654|ref|NP_001096924.2| megalin, isoform A [Drosophila melanogaster] gi|272506047|gb|ABW09371.2| megalin, isoform A [Drosophila melanogaster]

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 41/56 (73%), Positives = 48/56 (85%)

Query: 18  ALMFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
            LMFVAD  Q+LR +MDGT A SIVSEAAYKASGV +DI +KR+FWCD+LLDYIE+
Sbjct: 626 GLMFVADGGQVLRAHMDGTHARSIVSEAAYKASGVTVDIISKRVFWCDSLLDYIES 681

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198471567|ref|XP_001355664.2| GA11430 [Drosophila pseudoobscura pseudoobscura] gi|198145975|gb|EAL32723.2| GA11430 [Drosophila pseudoobscura pseudoobscura]

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 41/56 (73%), Positives = 48/56 (85%)

Query: 18  ALMFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
            LMFVAD  Q+LR +MDGT A SIVSEAAYKASGV +DI +KR+FWCD+LLDYIE+
Sbjct: 401 GLMFVADGGQVLRAHMDGTHARSIVSEAAYKASGVTVDIISKRVFWCDSLLDYIES 456

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
FB|FBgn0261260	4769	mgl "Megalin" [Drosophila mela	0.753	0.011	0.745	2.7e-15
FB|FBgn0000119	1678	arr "arrow" [Drosophila melano	0.726	0.031	0.403	0.00032

FB|FBgn0261260 mgl "Megalin" [Drosophila melanogaster (taxid:7227)]

 Score = 213 (80.0 bits), Expect = 2.7e-15, P = 2.7e-15
 Identities = 41/55 (74%), Positives = 48/55 (87%)

Query:    19 LMFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
             LMFVAD  Q+LR +MDGT A SIVSEAAYKASGV +DI +KR+FWCD+LLDYIE+
Sbjct:   627 LMFVADGGQVLRAHMDGTHARSIVSEAAYKASGVTVDIISKRVFWCDSLLDYIES 681

GO:0005041 "low-density lipoprotein receptor activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0048082 "regulation of adult chitin-containing cuticle pigmentation" evidence=IMP

FB|FBgn0000119 arr "arrow" [Drosophila melanogaster (taxid:7227)]

 Score = 104 (41.7 bits), Expect = 0.00032, P = 0.00032
 Identities = 23/57 (40%), Positives = 35/57 (61%)

Query:    20 MFVADSNQ----ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
             MF +D N+    + R ++DG+  + +VSE     +G+ALDI AK ++WCD   D IE
Sbjct:   534 MFWSDWNERKPKVERASLDGSERVVLVSENLGWPNGIALDIEAKAIYWCDGKTDKIE 590


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.130   0.364    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       73        73   0.00091  102 3  10 22  0.43    28
                                                     29  0.45    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  551 (59 KB)
  Total size of DFA:  115 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.52u 0.13s 10.65t   Elapsed:  00:00:00
  Total cpu time:  10.52u 0.13s 10.65t   Elapsed:  00:00:00
  Start:  Thu Aug 15 16:41:05 2013   End:  Thu Aug 15 16:41:05 2013

GO:0016055 "Wnt receptor signaling pathway" evidence=IMP

GO:0005041 "low-density lipoprotein receptor activity" evidence=ISS

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0005769 "early endosome" evidence=IDA

GO:0005770 "late endosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0042813 "Wnt-activated receptor activity" evidence=IDA

GO:0017147 "Wnt-protein binding" evidence=IPI

GO:0006622 "protein targeting to lysosome" evidence=IMP

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IMP

GO:0048076 "regulation of compound eye pigmentation" evidence=IMP

GO:0007399 "nervous system development" evidence=IMP

GO:0044332 "Wnt receptor signaling pathway involved in dorsal/ventral axis specification" evidence=IBA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	73
KOG1214|consensus	1289		99.64
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	99.58
KOG1214|consensus	1289		99.57
KOG1215|consensus	877		99.21
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	98.9
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	98.79
KOG1215|consensus	877		98.68
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.1
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.08
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	98.01
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.88
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.65
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.18
KOG1520|consensus	376		97.1
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	97.03
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.0
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.9
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.65
KOG4659|consensus	1899		96.59
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	96.53
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.51
KOG4659|consensus	1899		96.14
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	95.65
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	95.45
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	95.25
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	95.13
KOG1520|consensus	376		94.82
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	94.6
PRK11028	330	6-phosphogluconolactonase; Provisional	93.38
PF13449	326	Phytase-like: Esterase-like activity of phytase	92.9
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	92.89
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	92.01
COG3391	381	Uncharacterized conserved protein [Function unknow	91.69
PRK11028	330	6-phosphogluconolactonase; Provisional	90.52
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	90.17
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	88.54
KOG4499|consensus	310		88.22
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	88.22
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	87.82
PF05345	49	He_PIG: Putative Ig domain; InterPro: IPR008009 Th	86.45
COG3391	381	Uncharacterized conserved protein [Function unknow	85.46
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	85.15
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	84.86
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	83.91
KOG4499|consensus	310		81.63

>KOG1214|consensus

Probab=99.64  E-value=3.4e-16  Score=118.32  Aligned_cols=66  Identities=18%  Similarity=0.241  Sum_probs=63.5

Q ss_pred             ccceEEeCCCCeEEEeC----CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeeeC
Q psy4903           8 SSGENRTREQALMFVAD----SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET   73 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd----~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie~   73 (73)
                      |+++|+||..|.|||||    +++|+++.|||.++++++++++..|+||++|+.++.|+|+|.+..+.||
T Consensus      1113 PR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC 1182 (1289)
T KOG1214|consen 1113 PRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLEC 1182 (1289)
T ss_pred             cceEEeecccCceeeccccccCCcceeeccCCccceEEeecccCCCCCceeCcccceeeEEecCCcceeE
Confidence            78889999999999999    6999999999999999999999999999999999999999999998885

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=99.58  E-value=8.9e-15  Score=74.66  Aligned_cols=39  Identities=26%  Similarity=0.514  Sum_probs=36.8

Q ss_pred             CeEEEeC--CC-cEEEEEcCCCCeEEEEeCCCceeeEEEEcC
Q psy4903          18 ALMFVAD--SN-QILRTNMDGTMAMSIVSEAAYKASGVALDI   56 (73)
Q Consensus        18 g~lywtd--~~-~I~ra~ldGs~~~~l~~~~~~~p~~lavD~   56 (73)
                      |+|||+|  .. +|++++|||+++++++.+++..|.||||||
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            6899999  45 999999999999999999999999999996

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG1214|consensus

Probab=99.57  E-value=2.1e-15  Score=114.06  Aligned_cols=68  Identities=24%  Similarity=0.487  Sum_probs=64.6

Q ss_pred             eeccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeeeC
Q psy4903           6 KFSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET   73 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie~   73 (73)
                      +++.||..|.+..++||||  .+.|.||+|+|+..++++++++.+|+||||||..+++||+|+.++.||.
T Consensus      1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~Iev 1094 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEV 1094 (1289)
T ss_pred             ceeeeeecccccceEEEeecCCCccccccccCCCCceeecccCCCccceeeeeccceeeeeccccchhhe
Confidence            4578999999999999999  7999999999999999999999999999999999999999999999973

>KOG1215|consensus

Probab=99.21  E-value=1.5e-11  Score=93.36  Aligned_cols=66  Identities=30%  Similarity=0.551  Sum_probs=61.1

Q ss_pred             eccceEEeCCCCeEEEeC---CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCC-eee
Q psy4903           7 FSSGENRTREQALMFVAD---SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLD-YIE   72 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd---~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~-~ie   72 (73)
                      -++++++||..|++||+|   .++|+|+.|||+.+++++..++.+|+||++|...+++||+|.... .|+
T Consensus       524 ~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~  593 (877)
T KOG1215|consen  524 LPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADAKLDYTIE  593 (877)
T ss_pred             CccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEcccCCccee
Confidence            567889999999999999   368999999999999999999999999999999999999999988 554

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=98.90  E-value=2.4e-09  Score=53.03  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=30.7

Q ss_pred             eeeccceEEeCCCCeEEEeC--CCcEEEEEcCCCCe
Q psy4903           5 MKFSSGENRTREQALMFVAD--SNQILRTNMDGTMA   38 (73)
Q Consensus         5 ~~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~   38 (73)
                      +..|.|+++||..++|||+|  ...|+|+.+||+++
T Consensus         8 ~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~~   43 (43)
T smart00135        8 LGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR   43 (43)
T ss_pred             CCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCCC
Confidence            45789999999999999999  69999999999863

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=98.79  E-value=1.2e-08  Score=50.41  Aligned_cols=34  Identities=38%  Similarity=0.589  Sum_probs=30.1

Q ss_pred             EEEeCCCceeeEEEEcCCCCeEEEEeCCCCeeeC
Q psy4903          40 SIVSEAAYKASGVALDINAKRLFWCDNLLDYIET   73 (73)
Q Consensus        40 ~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie~   73 (73)
                      +++...+..|+|||+|+.+++|||+|.....|++
T Consensus         2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~   35 (43)
T smart00135        2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEV   35 (43)
T ss_pred             EEEECCCCCcCEEEEeecCCEEEEEeCCCCEEEE
Confidence            4566789999999999999999999999988863

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG1215|consensus

Probab=98.68  E-value=2.5e-08  Score=76.03  Aligned_cols=62  Identities=24%  Similarity=0.379  Sum_probs=55.8

Q ss_pred             ccceEEeCCCCeEEEeC-CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeeeC
Q psy4903           8 SSGENRTREQALMFVAD-SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET   73 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd-~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie~   73 (73)
                      |+.++++|..+.|||+| ...|+    ||+.+..+....+.+|+|++||+..+++||+|.+.+.||+
T Consensus         1 pra~~~~p~~~~l~wtd~~~~i~----dg~~~~~~~~~~~~~~ng~~id~~~~~~y~~d~~~~~i~~   63 (877)
T KOG1215|consen    1 PRAIALLPLEGLLFWTDWGANIE----DGGERKILEKEEFEWPNGLTIDLAWQRIYWADAKNDLIES   63 (877)
T ss_pred             CceEEeccccceEEEecCCcccc----cCcceEEeeccceeCCCcceecchhheeeeccccCCceEE
Confidence            56889999999999999 33466    8888999999999999999999999999999999998874

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.10  E-value=2e-05  Score=61.96  Aligned_cols=67  Identities=22%  Similarity=0.357  Sum_probs=54.4

Q ss_pred             eeeccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeC-------------CCceeeEEEEcCCCCeEEEEeCCCC
Q psy4903           5 MKFSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSE-------------AAYKASGVALDINAKRLFWCDNLLD   69 (73)
Q Consensus         5 ~~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~-------------~~~~p~~lavD~~~~~LYW~D~~~~   69 (73)
                      +.||.|+++|+.+|.+|.+|  +.+|.+.+.+|.....+-..             .+..|.|+++|..++.||++|...+
T Consensus       567 l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~  646 (1057)
T PLN02919        567 LKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENH  646 (1057)
T ss_pred             CCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCc
Confidence            57899999999999999999  79999999998644333321             2567999999998889999998765


Q ss_pred             ee
Q psy4903          70 YI   71 (73)
Q Consensus        70 ~i   71 (73)
                      +|
T Consensus       647 ~I  648 (1057)
T PLN02919        647 AL  648 (1057)
T ss_pred             eE
Confidence            54

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.08  E-value=3.6e-05  Score=50.46  Aligned_cols=60  Identities=20%  Similarity=0.222  Sum_probs=49.0

Q ss_pred             eccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCC
Q psy4903           7 FSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLD   69 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~   69 (73)
                      |+-|.+.||.+|.|||+|  +.+|.|...++...+++....   |.|++++...++||.++....
T Consensus         1 l~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~---~~G~~~~~~~g~l~v~~~~~~   62 (246)
T PF08450_consen    1 LGEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG---PNGMAFDRPDGRLYVADSGGI   62 (246)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS---EEEEEEECTTSEEEEEETTCE
T ss_pred             CCcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC---CceEEEEccCCEEEEEEcCce
Confidence            467899999999999999  799999999886555433323   999999977799999987643

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=98.01  E-value=3.8e-05  Score=44.83  Aligned_cols=62  Identities=15%  Similarity=0.244  Sum_probs=45.2

Q ss_pred             ceEEeCCCCeEEEeC-------------------CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCe
Q psy4903          10 GENRTREQALMFVAD-------------------SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDY   70 (73)
Q Consensus        10 g~~~dp~~g~lywtd-------------------~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~   70 (73)
                      ++.+++..|.+||||                   ++++.+-+.... +..++-.++..|+|+++...++.|..++....+
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~-~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R   80 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTK-ETTVLLDGLYFPNGVALSPDESFVLVAETGRYR   80 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTT-EEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCC-eEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence            688999999999998                   257777666654 444555689999999999999999999887776


Q ss_pred             ee
Q psy4903          71 IE   72 (73)
Q Consensus        71 ie   72 (73)
                      |-
T Consensus        81 i~   82 (89)
T PF03088_consen   81 IL   82 (89)
T ss_dssp             EE
T ss_pred             EE
Confidence            63

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.88  E-value=0.00014  Score=47.70  Aligned_cols=68  Identities=21%  Similarity=0.242  Sum_probs=50.7

Q ss_pred             eeeeccceEEeCCCCeEEEeC--CCcEEEEEcCCCC-----eEEEEeC--CCceeeEEEEcCCCCeEEEEeCCCCeee
Q psy4903           4 KMKFSSGENRTREQALMFVAD--SNQILRTNMDGTM-----AMSIVSE--AAYKASGVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus         4 ~~~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~-----~~~l~~~--~~~~p~~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      .+.+|.||+++|..+.||+++  ..+|.+..++...     ++++..-  ....|.|+++|. ..+||-++...+.|.
T Consensus       132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~  208 (246)
T PF08450_consen  132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIV  208 (246)
T ss_dssp             EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEE
T ss_pred             CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEE
Confidence            466799999999999999999  6899999997432     3444432  223699999996 557898877666653

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.65  E-value=0.0004  Score=54.80  Aligned_cols=67  Identities=10%  Similarity=0.173  Sum_probs=52.5

Q ss_pred             eeeccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeC----------------CCceeeEEEEcCCCCeEEEEeC
Q psy4903           5 MKFSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSE----------------AAYKASGVALDINAKRLFWCDN   66 (73)
Q Consensus         5 ~~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~----------------~~~~p~~lavD~~~~~LYW~D~   66 (73)
                      +..|.|+++||..+.||++|  +.+|.+.++.+....++...                .+..|.++++|..++.||.+|.
T Consensus       623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~  702 (1057)
T PLN02919        623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA  702 (1057)
T ss_pred             cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence            34589999999999999999  68888888766544444321                1567999999998999999998


Q ss_pred             CCCee
Q psy4903          67 LLDYI   71 (73)
Q Consensus        67 ~~~~i   71 (73)
                      ..++|
T Consensus       703 ~~~~I  707 (1057)
T PLN02919        703 GQHQI  707 (1057)
T ss_pred             CCCeE
Confidence            76655

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.18  E-value=0.0018  Score=43.91  Aligned_cols=63  Identities=16%  Similarity=0.247  Sum_probs=38.1

Q ss_pred             eeeeeccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEE--Ee------CCCceeeEEEEcCCCCeEEEEeC
Q psy4903           3 FKMKFSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSI--VS------EAAYKASGVALDINAKRLFWCDN   66 (73)
Q Consensus         3 ~~~~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l--~~------~~~~~p~~lavD~~~~~LYW~D~   66 (73)
                      +.+.=+||+.+||.+|.+|--+  ++.|.....+|.-...+  ..      ..+.+|+|+|+|. ..+||-+..
T Consensus       168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIvsE  240 (248)
T PF06977_consen  168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIVSE  240 (248)
T ss_dssp             --SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEEET
T ss_pred             ceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEEcC
Confidence            4455689999999999998887  68899988888744433  22      3567899999997 558887654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1520|consensus

Probab=97.10  E-value=0.0012  Score=47.29  Aligned_cols=67  Identities=13%  Similarity=0.292  Sum_probs=50.7

Q ss_pred             eeeeccceEEeCCCCeEEEeC------CCcEEEEEcCCC--C----------eEEEEeCCCceeeEEEEcCCCCeEEEEe
Q psy4903           4 KMKFSSGENRTREQALMFVAD------SNQILRTNMDGT--M----------AMSIVSEAAYKASGVALDINAKRLFWCD   65 (73)
Q Consensus         4 ~~~~~~g~~~dp~~g~lywtd------~~~I~ra~ldGs--~----------~~~l~~~~~~~p~~lavD~~~~~LYW~D   65 (73)
                      +++|..++.+|| +|-+||||      .....-|.+.|.  +          ...++-.+++-|+|+|+-+.+..+-.|+
T Consensus       159 ~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~E  237 (376)
T KOG1520|consen  159 PFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAE  237 (376)
T ss_pred             eeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEe
Confidence            678999999999 99999999      145666666662  1          2224446899999999998898887777


Q ss_pred             CCCCee
Q psy4903          66 NLLDYI   71 (73)
Q Consensus        66 ~~~~~i   71 (73)
                      ....+|
T Consensus       238 t~~~ri  243 (376)
T KOG1520|consen  238 TTTARI  243 (376)
T ss_pred             ecccee
Confidence            765554

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=97.03  E-value=0.0051  Score=42.20  Aligned_cols=60  Identities=18%  Similarity=0.142  Sum_probs=44.6

Q ss_pred             eccceEEeCCCCeEEEeC--CCcEEEEEcCC----CCeEEEEe-CC-CceeeEEEEcC-CCCeEEEEeCC
Q psy4903           7 FSSGENRTREQALMFVAD--SNQILRTNMDG----TMAMSIVS-EA-AYKASGVALDI-NAKRLFWCDNL   67 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd--~~~I~ra~ldG----s~~~~l~~-~~-~~~p~~lavD~-~~~~LYW~D~~   67 (73)
                      -+.|++.|+ +|.||+++  +..|.+.+.++    .+..+|.. .. +.+|.+++++. ..+.||..-..
T Consensus       187 ~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr  255 (287)
T PF03022_consen  187 QSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR  255 (287)
T ss_dssp             SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred             CCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECc
Confidence            568999999 99999999  68999999998    34444543 44 89999999996 35677776544

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.00  E-value=0.0032  Score=43.80  Aligned_cols=58  Identities=24%  Similarity=0.440  Sum_probs=44.0

Q ss_pred             eeeccceEEeCCCCeEEEeC--CCcEEEEEcC---CC--Ce--EEEEeCCCceeeEEEEcCCCCeEEEE
Q psy4903           5 MKFSSGENRTREQALMFVAD--SNQILRTNMD---GT--MA--MSIVSEAAYKASGVALDINAKRLFWC   64 (73)
Q Consensus         5 ~~~~~g~~~dp~~g~lywtd--~~~I~ra~ld---Gs--~~--~~l~~~~~~~p~~lavD~~~~~LYW~   64 (73)
                      +.++.||+.+|....||++|  ..+|.|..+|   |.  ++  .+.....-..|.|+++|-.+  .||+
T Consensus       162 ~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG--~lw~  228 (307)
T COG3386         162 LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG--NLWV  228 (307)
T ss_pred             EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC--CEEE
Confidence            67899999999999999999  6999999998   32  22  23333345789999999444  4563

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.90  E-value=0.0064  Score=42.31  Aligned_cols=60  Identities=17%  Similarity=0.321  Sum_probs=44.6

Q ss_pred             eEEeCCCCeEEEeC-C------------CcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeee
Q psy4903          11 ENRTREQALMFVAD-S------------NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus        11 ~~~dp~~g~lywtd-~------------~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      .++||. |.+|+++ +            ..++|..-+| ....++...+..|+|||+++.++.+|++|...++|.
T Consensus       116 ~~v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g-~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~  188 (307)
T COG3386         116 GVVDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDPDG-GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIH  188 (307)
T ss_pred             eeEcCC-CCEEEeCCCccccCccccCCcceEEEEcCCC-CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEE
Confidence            345565 6667665 3            3577777644 455566667999999999999999999999887764

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.65  E-value=0.0074  Score=42.27  Aligned_cols=57  Identities=19%  Similarity=0.314  Sum_probs=45.3

Q ss_pred             ccceEEeCCCCeEEEeCC---------------------CcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeC
Q psy4903           8 SSGENRTREQALMFVADS---------------------NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDN   66 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd~---------------------~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~   66 (73)
                      +.|++++| .|+||+++.                     ..|.|.+-||+..+ ++...+..|.|+++|. ...||.+|.
T Consensus       126 ~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e-~~a~G~rnp~Gl~~d~-~G~l~~tdn  202 (367)
T TIGR02604       126 LNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLR-VVAHGFQNPYGHSVDS-WGDVFFCDN  202 (367)
T ss_pred             ccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEE-EEecCcCCCccceECC-CCCEEEEcc
Confidence            56888888 689999761                     35899999987766 4567899999999997 567888887


Q ss_pred             C
Q psy4903          67 L   67 (73)
Q Consensus        67 ~   67 (73)
                      .
T Consensus       203 ~  203 (367)
T TIGR02604       203 D  203 (367)
T ss_pred             C
Confidence            4

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4659|consensus

Probab=96.59  E-value=0.0056  Score=49.87  Aligned_cols=63  Identities=17%  Similarity=0.242  Sum_probs=45.3

Q ss_pred             eeeeccceEEeCCCCeEEEeCCCcEEEEEcCCCCe------------------EEEEeCCCceeeEEEEcCCCCeEEEEe
Q psy4903           4 KMKFSSGENRTREQALMFVADSNQILRTNMDGTMA------------------MSIVSEAAYKASGVALDINAKRLFWCD   65 (73)
Q Consensus         4 ~~~~~~g~~~dp~~g~lywtd~~~I~ra~ldGs~~------------------~~l~~~~~~~p~~lavD~~~~~LYW~D   65 (73)
                      +.-+|+|+++|. .|.||+.|...|-...-+|--.                  +.|..-.++||..||||+..+.||-.|
T Consensus       473 ~L~~PkGIa~dk-~g~lYfaD~t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld  551 (1899)
T KOG4659|consen  473 QLIFPKGIAFDK-MGNLYFADGTRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD  551 (1899)
T ss_pred             eeccCCceeEcc-CCcEEEecccEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEee
Confidence            456899999996 6799999955555544443211                  112222788999999999999999888


Q ss_pred             CC
Q psy4903          66 NL   67 (73)
Q Consensus        66 ~~   67 (73)
                      ..
T Consensus       552 ~n  553 (1899)
T KOG4659|consen  552 TN  553 (1899)
T ss_pred             cc
Confidence            63

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=96.53  E-value=0.0087  Score=27.44  Aligned_cols=25  Identities=20%  Similarity=0.251  Sum_probs=21.8

Q ss_pred             CceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903          46 AYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus        46 ~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      +..|.|+++| ..++||-+|....+|
T Consensus         1 f~~P~gvav~-~~g~i~VaD~~n~rV   25 (28)
T PF01436_consen    1 FNYPHGVAVD-SDGNIYVADSGNHRV   25 (28)
T ss_dssp             BSSEEEEEEE-TTSEEEEEECCCTEE
T ss_pred             CcCCcEEEEe-CCCCEEEEECCCCEE
Confidence            3579999999 888999999988776

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.51  E-value=0.0078  Score=41.81  Aligned_cols=62  Identities=27%  Similarity=0.336  Sum_probs=47.0

Q ss_pred             ccceEEeCCCCeEEEeC---------------CCcEEEEEcCCCC------------eEEEEeCCCceeeEEEEcCCCCe
Q psy4903           8 SSGENRTREQALMFVAD---------------SNQILRTNMDGTM------------AMSIVSEAAYKASGVALDINAKR   60 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd---------------~~~I~ra~ldGs~------------~~~l~~~~~~~p~~lavD~~~~~   60 (73)
                      ..+|+++| .|+||++-               ..+|.|.+.||+-            ...++..++.+|.++++|+.+..
T Consensus       116 g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~  194 (331)
T PF07995_consen  116 GGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGR  194 (331)
T ss_dssp             EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTE
T ss_pred             CccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCc
Confidence            35688888 66999983               3799999999971            34567889999999999999999


Q ss_pred             EEEEeCCCCe
Q psy4903          61 LFWCDNLLDY   70 (73)
Q Consensus        61 LYW~D~~~~~   70 (73)
                      ||-+|.+.+.
T Consensus       195 l~~~d~G~~~  204 (331)
T PF07995_consen  195 LWAADNGPDG  204 (331)
T ss_dssp             EEEEEE-SSS
T ss_pred             EEEEccCCCC
Confidence            9999976553

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG4659|consensus

Probab=96.14  E-value=0.016  Score=47.37  Aligned_cols=61  Identities=18%  Similarity=0.283  Sum_probs=44.4

Q ss_pred             eccceEEeCCCCeEEEeC--CCcEEEEE-cCCC----CeEEEEeC--------------------CCceeeEEEEcCCCC
Q psy4903           7 FSSGENRTREQALMFVAD--SNQILRTN-MDGT----MAMSIVSE--------------------AAYKASGVALDINAK   59 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd--~~~I~ra~-ldGs----~~~~l~~~--------------------~~~~p~~lavD~~~~   59 (73)
                      ++==+|++|+.|.||-+|  +.+|.|.. +.+.    +.+++..+                    .+..|.|||+| ..+
T Consensus       408 h~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~d-k~g  486 (1899)
T KOG4659|consen  408 HSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFD-KMG  486 (1899)
T ss_pred             ceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEc-cCC
Confidence            334478999999999999  68888854 3332    23444321                    57789999999 566


Q ss_pred             eEEEEeCCC
Q psy4903          60 RLFWCDNLL   68 (73)
Q Consensus        60 ~LYW~D~~~   68 (73)
                      .||++|...
T Consensus       487 ~lYfaD~t~  495 (1899)
T KOG4659|consen  487 NLYFADGTR  495 (1899)
T ss_pred             cEEEecccE
Confidence            899999864

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=95.65  E-value=0.011  Score=29.55  Aligned_cols=15  Identities=33%  Similarity=0.685  Sum_probs=12.7

Q ss_pred             CeEEEEeCCCC-eeeC
Q psy4903          59 KRLFWCDNLLD-YIET   73 (73)
Q Consensus        59 ~~LYW~D~~~~-~ie~   73 (73)
                      ++|||+|...+ .|++
T Consensus         1 ~~iYWtD~~~~~~I~~   16 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIER   16 (42)
T ss_dssp             TEEEEEETTTTEEEEE
T ss_pred             CEEEEEECCCCcEEEE
Confidence            58999999999 8763

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=95.45  E-value=0.18  Score=34.91  Aligned_cols=66  Identities=12%  Similarity=0.201  Sum_probs=49.2

Q ss_pred             eccceEEeCCCCeEEEeC--CCcEEEEEcCCC-CeEEEE---eCCCceeeEEEEcCCCCeEEEEeCCCCeee
Q psy4903           7 FSSGENRTREQALMFVAD--SNQILRTNMDGT-MAMSIV---SEAAYKASGVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs-~~~~l~---~~~~~~p~~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      .+.+++++|...+||-++  ...|..-.+|+. +....+   ...-..|.++++|+.++.||-+....+.|.
T Consensus       246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~  317 (345)
T PF10282_consen  246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVS  317 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred             CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEE
Confidence            577899999999999998  578888888653 233332   233456999999999999999998877664

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=95.25  E-value=0.07  Score=30.85  Aligned_cols=38  Identities=26%  Similarity=0.367  Sum_probs=29.7

Q ss_pred             cCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903          33 MDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus        33 ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      .||+... .+.+++..|+||++|+..+.||-++.....|
T Consensus        41 yd~~~~~-~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I   78 (86)
T PF01731_consen   41 YDGKEVK-VVASGFSFANGIAISPDKKYLYVASSLAHSI   78 (86)
T ss_pred             EeCCEeE-EeeccCCCCceEEEcCCCCEEEEEeccCCeE
Confidence            3454443 3456899999999999999999999877665

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=95.13  E-value=0.11  Score=38.18  Aligned_cols=42  Identities=21%  Similarity=0.379  Sum_probs=35.6

Q ss_pred             cEEEEEcCCCC----------eEEEEeCCCceeeEEEEcCCCCeEEEEeCCCC
Q psy4903          27 QILRTNMDGTM----------AMSIVSEAAYKASGVALDINAKRLFWCDNLLD   69 (73)
Q Consensus        27 ~I~ra~ldGs~----------~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~   69 (73)
                      +|.|.+.||+-          +..|...++.+|-|+++|+ ...||.+|.+.+
T Consensus       200 kILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp-~G~Lw~~e~Gp~  251 (454)
T TIGR03606       200 KVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTP-DGTLYASEQGPN  251 (454)
T ss_pred             EEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECC-CCCEEEEecCCC
Confidence            69999999972          4568888999999999999 789999998753

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG1520|consensus

Probab=94.82  E-value=0.097  Score=37.69  Aligned_cols=60  Identities=17%  Similarity=0.236  Sum_probs=47.4

Q ss_pred             ccceEEeCCCCeEEEeC-CCcEEEEEcCCCCeEEEEeC----CCceeeEEEEcCCCCeEEEEeCCC
Q psy4903           8 SSGENRTREQALMFVAD-SNQILRTNMDGTMAMSIVSE----AAYKASGVALDINAKRLFWCDNLL   68 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd-~~~I~ra~ldGs~~~~l~~~----~~~~p~~lavD~~~~~LYW~D~~~   68 (73)
                      |=||+.+.+.|-+|-+| ---+....-+|...+.+..+    .+...+++.||. +..+||+|...
T Consensus       117 PLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSs  181 (376)
T KOG1520|consen  117 PLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSS  181 (376)
T ss_pred             cceEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcC-CCeEEEecccc
Confidence            56999999999999999 45677777777665555544    455578999998 99999999864

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=94.60  E-value=0.41  Score=33.13  Aligned_cols=64  Identities=11%  Similarity=0.166  Sum_probs=45.9

Q ss_pred             ccceEEeCCCCeEEEeC--CCcEEEEEcC-CCCeEEEEeC---------CCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           8 SSGENRTREQALMFVAD--SNQILRTNMD-GTMAMSIVSE---------AAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd--~~~I~ra~ld-Gs~~~~l~~~---------~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      |+.++++|...++|-.+  ...|....++ .......+..         .-..|.+|++++.++.||-+....+.|
T Consensus       194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI  269 (345)
T PF10282_consen  194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI  269 (345)
T ss_dssp             EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred             CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence            45689999888999998  6888888888 3332222221         112699999999999999999988776

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=93.38  E-value=1.4  Score=29.82  Aligned_cols=62  Identities=11%  Similarity=0.133  Sum_probs=43.4

Q ss_pred             ccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeC--CCceeeEEEEcCCCCeEEEEeCCCC
Q psy4903           8 SSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSE--AAYKASGVALDINAKRLFWCDNLLD   69 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~--~~~~p~~lavD~~~~~LYW~D~~~~   69 (73)
                      +++++++|....||-+.  ...|..-.+++.....++..  ....|.++++++.++.||=+....+
T Consensus        37 ~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~  102 (330)
T PRK11028         37 VQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNAN  102 (330)
T ss_pred             CccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCC
Confidence            56788999888999886  57776666664333333322  2347999999999999998865433

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=92.90  E-value=0.42  Score=33.12  Aligned_cols=57  Identities=19%  Similarity=0.302  Sum_probs=43.3

Q ss_pred             cceEEeCCCCeEEEeC--C------CcEEEEEcCCCCeEEE-EeCCC-------------ceeeEEEEcCCCCeEEEEeC
Q psy4903           9 SGENRTREQALMFVAD--S------NQILRTNMDGTMAMSI-VSEAA-------------YKASGVALDINAKRLFWCDN   66 (73)
Q Consensus         9 ~g~~~dp~~g~lywtd--~------~~I~ra~ldGs~~~~l-~~~~~-------------~~p~~lavD~~~~~LYW~D~   66 (73)
                      -||++ +..|.+||++  .      ++|.+...+|...+.+ +...+             .-.+|||+...++.||-+-.
T Consensus        88 Egi~~-~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E  166 (326)
T PF13449_consen   88 EGIAV-PPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME  166 (326)
T ss_pred             hHeEE-ecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence            37888 8899999998  6      9999999999875555 32221             23799999988887876544

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=92.89  E-value=1.6  Score=29.56  Aligned_cols=47  Identities=17%  Similarity=0.285  Sum_probs=35.5

Q ss_pred             ccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEE
Q psy4903           8 SSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVAL   54 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lav   54 (73)
                      .|||+.+|.++.||=..  .+.|..-+++|.-.+.+--.+...|+||+.
T Consensus        24 ~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y   72 (248)
T PF06977_consen   24 LSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITY   72 (248)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE
T ss_pred             ccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEE
Confidence            48999999999988665  689999999987666655567888999988

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.01  E-value=0.77  Score=32.39  Aligned_cols=62  Identities=19%  Similarity=0.267  Sum_probs=44.7

Q ss_pred             eeeeeccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEE--------eCCCceeeEEEEcCCCCeEEEEe
Q psy4903           3 FKMKFSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIV--------SEAAYKASGVALDINAKRLFWCD   65 (73)
Q Consensus         3 ~~~~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~--------~~~~~~p~~lavD~~~~~LYW~D   65 (73)
                      +-++=-||+..|+.++.|+--.  ...+.....+|--+..+.        ++++.+|+|+|.|..+ .||-+.
T Consensus       230 ~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g-~lYIvS  301 (316)
T COG3204         230 LFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDG-NLYIVS  301 (316)
T ss_pred             eEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCC-CEEEEe
Confidence            3455568999999988776554  688888888886544443        2488899999999544 566543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=91.69  E-value=2.3  Score=30.04  Aligned_cols=63  Identities=13%  Similarity=0.175  Sum_probs=43.4

Q ss_pred             eccceEEeCCCCeEEEeC-C---CcEEEEEcCCCCeEEEEeCCCc-eeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           7 FSSGENRTREQALMFVAD-S---NQILRTNMDGTMAMSIVSEAAY-KASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd-~---~~I~ra~ldGs~~~~l~~~~~~-~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      .|.|++++|..+.+|-++ +   .++....-.  ...++...... .|.++++|+.++++|=++...+.+
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~--t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v  184 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA--TNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTV  184 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCC--CCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeE
Confidence            578999999999999998 2   444443333  22222222222 689999999999999999665544

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=90.52  E-value=2.4  Score=28.71  Aligned_cols=63  Identities=14%  Similarity=0.153  Sum_probs=42.5

Q ss_pred             cceEEeCCCCeEEEeC--CCcEEEEEcCCCC-eEEEEeC--CCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           9 SGENRTREQALMFVAD--SNQILRTNMDGTM-AMSIVSE--AAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         9 ~g~~~dp~~g~lywtd--~~~I~ra~ldGs~-~~~l~~~--~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      .+++++|..+++|=++  ...|..-.++-.. ...++..  .-..|.++++++.++.||=+....+.|
T Consensus       231 ~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v  298 (330)
T PRK11028        231 ADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHI  298 (330)
T ss_pred             eeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcE
Confidence            3578899888899887  4667666654221 2222222  224799999999999999888755544

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=90.17  E-value=0.46  Score=27.57  Aligned_cols=32  Identities=25%  Similarity=0.506  Sum_probs=27.6

Q ss_pred             eeeccceEEeCCCCeEEEeC--CCcEEEEEcCCC
Q psy4903           5 MKFSSGENRTREQALMFVAD--SNQILRTNMDGT   36 (73)
Q Consensus         5 ~~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs   36 (73)
                      .-||.|+++.|....++.++  ..+|.|-++.|.
T Consensus        56 L~fpNGVals~d~~~vlv~Et~~~Ri~rywl~Gp   89 (89)
T PF03088_consen   56 LYFPNGVALSPDESFVLVAETGRYRILRYWLKGP   89 (89)
T ss_dssp             ESSEEEEEE-TTSSEEEEEEGGGTEEEEEESSST
T ss_pred             CCccCeEEEcCCCCEEEEEeccCceEEEEEEeCC
Confidence            45899999999999999999  699999999883

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=88.54  E-value=1.3  Score=30.41  Aligned_cols=62  Identities=16%  Similarity=0.277  Sum_probs=38.7

Q ss_pred             ceEEeCC---CCeEEEeC--CCcEEEEEcC----CCC--e------EEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeee
Q psy4903          10 GENRTRE---QALMFVAD--SNQILRTNMD----GTM--A------MSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus        10 g~~~dp~---~g~lywtd--~~~I~ra~ld----Gs~--~------~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      |+++.|.   .+.|||..  +.++++...+    .+.  .      ...+.+......|+++|. ...||.++...+.|-
T Consensus       132 gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~-~G~ly~~~~~~~aI~  210 (287)
T PF03022_consen  132 GIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDP-NGNLYFTDVEQNAIG  210 (287)
T ss_dssp             EEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEET-TTEEEEEECCCTEEE
T ss_pred             ccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECC-CCcEEEecCCCCeEE
Confidence            4667663   46899998  5678887764    221  1      122333335679999997 889999999877664

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG4499|consensus

Probab=88.22  E-value=2.7  Score=29.25  Aligned_cols=66  Identities=14%  Similarity=0.178  Sum_probs=46.5

Q ss_pred             eeeeccceEEeCCCCeEEEeC--CCcEEEEEcC---C--CCeEEEEeC------CCceeeEEEEcCCCCeEEEEeCCCCe
Q psy4903           4 KMKFSSGENRTREQALMFVAD--SNQILRTNMD---G--TMAMSIVSE------AAYKASGVALDINAKRLFWCDNLLDY   70 (73)
Q Consensus         4 ~~~~~~g~~~dp~~g~lywtd--~~~I~ra~ld---G--s~~~~l~~~------~~~~p~~lavD~~~~~LYW~D~~~~~   70 (73)
                      .+.+|.||+-|-....+|++|  +-.|..-..|   |  +++.+++.-      +-..|.|++||- +.+||-+-...++
T Consensus       156 ~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~  234 (310)
T KOG4499|consen  156 CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGT  234 (310)
T ss_pred             hccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcE
Confidence            467899999999999999999  5556444433   2  568888752      334599999995 6677766544433

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=88.22  E-value=3.4  Score=28.71  Aligned_cols=60  Identities=15%  Similarity=0.232  Sum_probs=42.2

Q ss_pred             eeccceEEeCCCCeEEEeC-CCcEEEEEcCCCCeEEEEe------CCCceeeEEEEcCC---CCeEEEEeC
Q psy4903           6 KFSSGENRTREQALMFVAD-SNQILRTNMDGTMAMSIVS------EAAYKASGVALDIN---AKRLFWCDN   66 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd-~~~I~ra~ldGs~~~~l~~------~~~~~p~~lavD~~---~~~LYW~D~   66 (73)
                      .-|.+|+..|. |.||.++ ..+|.+..-+|+....+..      .....+-|||+|+.   ++.||.+-.
T Consensus         2 ~~P~~~a~~pd-G~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t   71 (331)
T PF07995_consen    2 NNPRSMAFLPD-GRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT   71 (331)
T ss_dssp             SSEEEEEEETT-SCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred             CCceEEEEeCC-CcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence            35789999997 8899998 7999999988876333322      24456899999983   467766544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=87.82  E-value=1  Score=25.94  Aligned_cols=25  Identities=20%  Similarity=0.469  Sum_probs=20.5

Q ss_pred             eeeccceEEeCCCCeEEEeC--CCcEE
Q psy4903           5 MKFSSGENRTREQALMFVAD--SNQIL   29 (73)
Q Consensus         5 ~~~~~g~~~dp~~g~lywtd--~~~I~   29 (73)
                      +.+|.||+++|...+||-++  ...|.
T Consensus        53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~   79 (86)
T PF01731_consen   53 FSFANGIAISPDKKYLYVASSLAHSIH   79 (86)
T ss_pred             CCCCceEEEcCCCCEEEEEeccCCeEE
Confidence            57899999999999999887  34444

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins

Probab=86.45  E-value=0.88  Score=23.41  Aligned_cols=19  Identities=11%  Similarity=0.017  Sum_probs=17.6

Q ss_pred             eeccceEEeCCCCeEEEeC
Q psy4903           6 KFSSGENRTREQALMFVAD   24 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd   24 (73)
                      .+|+||.+||.+|.|.|+-
T Consensus        11 ~LP~gLs~d~~tG~isGtp   29 (49)
T PF05345_consen   11 GLPSGLSLDPSTGTISGTP   29 (49)
T ss_pred             CCCCcEEEeCCCCEEEeec
Confidence            5899999999999999985

Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=85.46  E-value=9.3  Score=27.01  Aligned_cols=60  Identities=13%  Similarity=0.236  Sum_probs=43.3

Q ss_pred             eccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCC
Q psy4903           7 FSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNL   67 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~   67 (73)
                      .+.|+++.|...++|=++  ...|.-..++......-+.... .|.++++|+..+.+|-++..
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~  136 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAG  136 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecc
Confidence            467899999999999887  4666665543322222222232 89999999999999999984

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=85.15  E-value=4  Score=29.73  Aligned_cols=59  Identities=15%  Similarity=0.097  Sum_probs=42.4

Q ss_pred             cceEEeCCCCeEEEeC---------------CCcEEEEEcC--------CCCeEEEEeCCCceeeEEEEcCCCCeEEEEe
Q psy4903           9 SGENRTREQALMFVAD---------------SNQILRTNMD--------GTMAMSIVSEAAYKASGVALDINAKRLFWCD   65 (73)
Q Consensus         9 ~g~~~dp~~g~lywtd---------------~~~I~ra~ld--------Gs~~~~l~~~~~~~p~~lavD~~~~~LYW~D   65 (73)
                      +-|+.+|.. +||-+-               ..+|.|..-+        +.+ ..++..++.+|.|++.|+.+..||-+|
T Consensus       180 ~~l~f~pDG-~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~-~~i~s~G~RN~qGl~w~P~tg~Lw~~e  257 (399)
T COG2133         180 GRLVFGPDG-KLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPN-SEIWSYGHRNPQGLAWHPVTGALWTTE  257 (399)
T ss_pred             ccEEECCCC-cEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCC-cceEEeccCCccceeecCCCCcEEEEe
Confidence            446777766 888773               1334443333        333 456777999999999999999999999


Q ss_pred             CCCC
Q psy4903          66 NLLD   69 (73)
Q Consensus        66 ~~~~   69 (73)
                      ...+
T Consensus       258 ~g~d  261 (399)
T COG2133         258 HGPD  261 (399)
T ss_pred             cCCC
Confidence            8764

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=84.86  E-value=4.1  Score=28.55  Aligned_cols=60  Identities=17%  Similarity=0.215  Sum_probs=40.9

Q ss_pred             eeeccceEEeCCCCeEEEeCCCcEEEE-EcCCC-----CeEEEEeC---C----CceeeEEEEcCCCCeEEEEeCC
Q psy4903           5 MKFSSGENRTREQALMFVADSNQILRT-NMDGT-----MAMSIVSE---A----AYKASGVALDINAKRLFWCDNL   67 (73)
Q Consensus         5 ~~~~~g~~~dp~~g~lywtd~~~I~ra-~ldGs-----~~~~l~~~---~----~~~p~~lavD~~~~~LYW~D~~   67 (73)
                      +.+|.|+++.+..  ||-++.++|.|. ..+|.     .+++++..   .    ...|+++++++. .+||+++..
T Consensus        71 l~~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpD-G~LYv~~G~  143 (367)
T TIGR02604        71 LSMVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPD-GWLYFNHGN  143 (367)
T ss_pred             CCCccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCC-CCEEEeccc
Confidence            3467888888754  888887788887 44442     34555542   1    345889999874 589998873

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=83.91  E-value=14  Score=26.64  Aligned_cols=65  Identities=6%  Similarity=0.044  Sum_probs=49.5

Q ss_pred             ccceEEeCCCCeEEEeC--CCcEEEEEcCCC-CeEEEEe---------CCCceeeEEEEcCCCCeEEEEeCCCCeee
Q psy4903           8 SSGENRTREQALMFVAD--SNQILRTNMDGT-MAMSIVS---------EAAYKASGVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd--~~~I~ra~ldGs-~~~~l~~---------~~~~~p~~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      |+=|+.+|...+.|-..  +.+|.....++. .+-..++         .+-.+..+|.|.+.++.||-++.+.+.|-
T Consensus       193 PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~  269 (346)
T COG2706         193 PRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA  269 (346)
T ss_pred             cceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence            45588999999999887  899999998874 2222221         14556788999999999999999988763

>KOG4499|consensus

Probab=81.63  E-value=4.4  Score=28.24  Aligned_cols=62  Identities=16%  Similarity=0.129  Sum_probs=40.8

Q ss_pred             eeeeeccceEEeCCCCeEEEeC-----------------------CCcEEEEEcCCCCeEEEEe---CCCceeeEEEEcC
Q psy4903           3 FKMKFSSGENRTREQALMFVAD-----------------------SNQILRTNMDGTMAMSIVS---EAAYKASGVALDI   56 (73)
Q Consensus         3 ~~~~~~~g~~~dp~~g~lywtd-----------------------~~~I~ra~ldGs~~~~l~~---~~~~~p~~lavD~   56 (73)
                      |.-++|.|+++|- .|.||-+-                       .++|.+|-+.|.+...+..   ..+..|.++--|+
T Consensus       209 ~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa~~~dp~~~~~~p  287 (310)
T KOG4499|consen  209 FESLEPDGMTIDT-EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAAKFDDPVRTNTDP  287 (310)
T ss_pred             cCCCCCCcceEcc-CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEehhcccCchhcccCC
Confidence            4556788888775 55555442                       3677788888876555543   2666788777777


Q ss_pred             CCCeEEEEe
Q psy4903          57 NAKRLFWCD   65 (73)
Q Consensus        57 ~~~~LYW~D   65 (73)
                      ....+|=+.
T Consensus       288 ~aG~iykit  296 (310)
T KOG4499|consen  288 NAGTIYKIT  296 (310)
T ss_pred             CCccEEEec
Confidence            677776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	73
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	7e-12
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	1e-05
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	1e-04
3v65_B	386	Low-density lipoprotein receptor-related protein;	1e-11
3v65_B	386	Low-density lipoprotein receptor-related protein;	9e-06
3v65_B	386	Low-density lipoprotein receptor-related protein;	4e-05
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	2e-11
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	2e-05
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	3e-11
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	6e-05
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	3e-10
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	7e-08
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	4e-05
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	5e-04
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	1e-08
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	4e-07
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	6e-07
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	4e-06
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	2e-05
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	3e-05
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	1e-04
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	4e-08
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	8e-08
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	2e-06
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	6e-06
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	7e-06
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	6e-05
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	2e-04
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	1e-07
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	3e-06
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	1e-05
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	3e-05
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	1e-07
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	3e-07
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	2e-06
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	2e-07
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	4e-06
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	9e-06
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	1e-04

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 57.5 bits (138), Expect = 7e-12
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 19  LMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
            M+  D      I +  ++G    S+V+E     +G+ LD+ + RL+W D+ L  I 
Sbjct: 215 FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 271

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 39.8 bits (92), Expect = 1e-05
 Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 20  MFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDN 66
           ++  DS    +   +  G    ++  E   K   + +D     ++W D 
Sbjct: 173 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW 221

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 37.5 bits (86), Expect = 1e-04
 Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 19  LMFVADSNQ--ILRTNMDGTMAMS----IVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
            ++ +D +Q  I  T +D    +S    ++S       G+A+D     ++W D++L  + 
Sbjct: 125 RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 184

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 57.1 bits (137), Expect = 1e-11
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 19  LMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
            ++  D      I  ++MDG+    I     +  +G+ +D   +R++W D     IE 
Sbjct: 215 TIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER 272

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 40.5 bits (94), Expect = 9e-06
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 25  SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
            ++ILR N++G+    +VS       G+A+D    +L+W D+    IE
Sbjct: 137 LDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIE 184

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 38.6 bits (89), Expect = 4e-05
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 20  MFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
           ++  DS  ++I   N+DG     ++ ++  K   +AL      ++W D
Sbjct: 173 LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTD 220

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 56.8 bits (136), Expect = 2e-11
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 19  LMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
            M+  D      I +  ++G    S+V+E     +G+ LD+ + RL+W D+ L  I +
Sbjct: 527 FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 584

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 39.8 bits (92), Expect = 2e-05
 Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 20  MFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
           ++  DS    +   +  G    ++  E   K   + +D     ++W D
Sbjct: 485 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD 532

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 56.0 bits (134), Expect = 3e-11
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 19  LMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
            M+  D      I +  ++G    S+V+E     +G+ LD+ + RL+W D+ L  I +
Sbjct: 509 FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 566

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 38.2 bits (88), Expect = 6e-05
 Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 20  MFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
           ++  DS    +   +  G    ++  E   K   + +D     ++W D
Sbjct: 467 IYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTD 514

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 52.9 bits (127), Expect = 3e-10
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 19  LMFVADSNQ----ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
            ++  D N+    I  ++MDGT    +  +     +G+  D  + +L W D      E
Sbjct: 135 NLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE 192

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 46.4 bits (110), Expect = 7e-08
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 20  MFVADSNQ--ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
           ++  D ++  I R ++ G    +I+ +      G+ALD   + +FW D+ LD IE
Sbjct: 50  VYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIE 104

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 38.7 bits (90), Expect = 4e-05
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 20  MFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
           +F  DS  ++I    MDGT    +         G+  D     L+W D
Sbjct: 93  IFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTD 140

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 35.2 bits (81), Expect = 5e-04
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 20 MFVADSNQILRTNMDGTMAMSIVSEAAYK-----ASGVALDINAKRLFWCDNLLDYIE 72
          +  A + +I R  ++        ++A          G+A D   K ++W D     I 
Sbjct: 4  LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIG 61

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 48.7 bits (115), Expect = 1e-08
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 19  LMFVADSN---QILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
            M+  D     +I R  +DG+  + +V+ +    +G+ALD +  +++W D   D IE
Sbjct: 448 YMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIE 504

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 44.0 bits (103), Expect = 4e-07
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 20  MFVADSNQ--ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
           ++  D     I R+ +DG+ +  +V+       G+A+D  A+ L+W D   D IE
Sbjct: 363 IYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIE 417

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 43.7 bits (102), Expect = 6e-07
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 19  LMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
            M+  D  +   I R  MDG+    I++   Y  +G+ LD   ++L+W D  L++I 
Sbjct: 140 FMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH 196

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 41.3 bits (96), Expect = 4e-06
 Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 20  MFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
           ++  DS  N+I  +N+DG++   +  +   +   +ALD ++  ++W D
Sbjct: 98  LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTD 145

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 39.0 bits (90), Expect = 2e-05
 Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 13 RTREQALMFVADSNQILRTNM-DGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI 71
                L+  A+   +   +  +G    +IV      A+ V    +   ++W D   + I
Sbjct: 5  HHHHAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAI 64

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 39.0 bits (90), Expect = 3e-05
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 20  MFVADSNQ--ILRTNMDGTMAMS-IVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
           ++ +D ++  I RT  + T ++  +V        G+A D   ++L+W D+  + IE
Sbjct: 54  IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIE 109

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 37.1 bits (85), Expect = 1e-04
 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 20  MFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDN 66
           ++  D+  ++I  T ++GTM   ++SE   +   + LD     ++W D 
Sbjct: 406 LYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDW 454

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 46.7 bits (110), Expect = 4e-08
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 20  MFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
           ++  D     I R  M+G+    +V        G+A+D   K L+W D   + IE
Sbjct: 51  IYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIE 105

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 46.3 bits (109), Expect = 8e-08
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 19  LMFVADSNQ----ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
            M+  +  +    I R  +DGT    +      K   +ALD    +LFW D+ L  IE
Sbjct: 445 YMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIE 502

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 42.1 bits (98), Expect = 2e-06
 Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 20  MFVADSNQ--ILRTNMDGTMAMSIVS------EAAYKASGVALDINAKRLFWCDNLLDYI 71
           ++  DS Q  I +   DG+   ++V           +   +++DI ++ ++W     + I
Sbjct: 354 LYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVI 413

Query: 72  E 72
            
Sbjct: 414 N 414

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 40.9 bits (95), Expect = 6e-06
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 16 EQALMFVADSNQILRTNMDGT-MAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI 71
           +A +  +    I R +++     ++I      +AS +  D+   R++W D  L  I
Sbjct: 5  PEAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTI 61

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 40.6 bits (94), Expect = 7e-06
 Identities = 6/48 (12%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 20  MFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
           ++      N I  T +DG     ++     +   V ++     +++ +
Sbjct: 403 IYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTN 450

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 37.9 bits (87), Expect = 6e-05
 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 20  MFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDN 66
           ++ AD+  N+I  + +DG     +V +       +ALD     ++W + 
Sbjct: 94  LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW 142

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 36.7 bits (84), Expect = 2e-04
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 19  LMFVADSN---QILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
            M+  +     +I R  MDG+   ++V      A+G+ +D   +RL+W D   + IE+
Sbjct: 136 FMYWTEWGGKPKIDRAAMDGSERTTLVPNVGR-ANGLTIDYAKRRLYWTDLDTNLIES 192

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 45.8 bits (108), Expect = 1e-07
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 19  LMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
            M+  D      I +  ++G    S+V+E     +G+ LD+ + RL+W D+ L  I 
Sbjct: 133 FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 189

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 41.6 bits (97), Expect = 3e-06
 Identities = 8/55 (14%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 18 ALMFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
          A +F  + +++ +  +D +   S++         +  ++ + R++W D     I 
Sbjct: 2  AYLFFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMIC 55

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 39.7 bits (92), Expect = 1e-05
 Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 20  MFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
           ++  DS    +   +  G    ++  E   K   + +D     ++W D
Sbjct: 91  IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD 138

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 38.9 bits (90), Expect = 3e-05
 Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 20  MFVADSNQ--ILRTNMDGTMAMS----IVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
           ++ +D +Q  I  T +D    +S    ++S       G+A+D     ++W D++L  + 
Sbjct: 44  IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 102

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 45.6 bits (107), Expect = 1e-07
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 20  MFVADSNQ--ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
           +F +D     ILR N++G+    +VS       G+A+D    +L+W D+    IE
Sbjct: 87  VFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIE 141

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 44.5 bits (104), Expect = 3e-07
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 19  LMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
            ++  D      I  ++MDG+    I     +  +G+ +D   +R++W D     IE
Sbjct: 172 TIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIE 228

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 42.6 bits (99), Expect = 2e-06
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 20  MFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
           ++  DS  ++I   N+DG     ++ ++  K   +AL      ++W D
Sbjct: 130 LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTD 177

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 45.1 bits (106), Expect = 2e-07
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 19  LMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
            M+  D  +   I R  MDG+    I++   Y  +G+ LD   ++L+W D  L++I 
Sbjct: 135 FMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH 191

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 41.2 bits (96), Expect = 4e-06
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 20  MFVADSNQ--ILRTNMDGTMAMS-IVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
           ++ +D ++  I RT  + T ++  +V        G+A D   ++L+W D+  + IE
Sbjct: 49  IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIE 104

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 40.4 bits (94), Expect = 9e-06
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 17 QALMFVADSNQILRTNM-DGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI 71
            L+  A+   +   +  +G    +IV      A+ V    +   ++W D   + I
Sbjct: 4  APLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAI 59

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 37.4 bits (86), Expect = 1e-04
 Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 20  MFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
           ++  DS  N+I  +N+DG++   +  +   +   +ALD ++  ++W D
Sbjct: 93  LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTD 140

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	73
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.72
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.7
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.67
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.66
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.64
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.64
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.63
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.61
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.61
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.6
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.46
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.46
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.44
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.43
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.42
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.42
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.37
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.29
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.24
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.14
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.66
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.62
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.43
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.41
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.37
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.25
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.21
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.06
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.01
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.9
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	97.85
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.81
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.73
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.61
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.59
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.59
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.51
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.42
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.39
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.38
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.31
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.27
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	97.21
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.21
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	97.17
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.16
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.09
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.08
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.07
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.05
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	96.99
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	96.92
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.81
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	96.76
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.71
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	96.63
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.62
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.59
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.56
2qe8_A	343	Uncharacterized protein; structural genomics, join	96.55
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.51
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.49
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	96.39
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.18
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.07
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	95.87
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	95.85
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	95.71
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	95.63
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	95.39
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	95.28
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.26
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	95.05
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	95.01
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	94.8
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	94.75
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	94.72
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	94.53
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	94.42
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.03
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	93.79
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.77
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	93.45
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	93.26
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	92.99
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	92.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	92.76
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	91.91
2ece_A	462	462AA long hypothetical selenium-binding protein;	91.79
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	91.57
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	91.53
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	90.98
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	90.18
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	89.62
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	87.71
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	86.75
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	86.18
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	85.57
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	84.68
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	83.86
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	83.68
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	82.44
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	81.93
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	81.75
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	81.06
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	80.18
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	80.06
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	80.01

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.72  E-value=1.6e-17  Score=120.89  Aligned_cols=67  Identities=27%  Similarity=0.393  Sum_probs=62.6

Q ss_pred             eccceEEeCCCCeEEEeC--C-C-cEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeeeC
Q psy4903           7 FSSGENRTREQALMFVAD--S-N-QILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET   73 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd--~-~-~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie~   73 (73)
                      -|+||++||.+|+|||||  . + +|+|+.|||+++++++.+++.+|+||++|..+++|||+|...++||+
T Consensus       433 ~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~  503 (628)
T 4a0p_A          433 RPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIES  503 (628)
T ss_dssp             CEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEE
Confidence            488999999999999999  3 3 89999999999999999999999999999999999999999998874

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.70  E-value=4.7e-17  Score=118.24  Aligned_cols=68  Identities=24%  Similarity=0.350  Sum_probs=63.6

Q ss_pred             eeccceEEeCCCCeEEEeC---CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeeeC
Q psy4903           6 KFSSGENRTREQALMFVAD---SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET   73 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd---~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie~   73 (73)
                      .-|+|+++||.+|.|||||   .++|+|+.|||+++++++...+.+|+|||||+.+++|||+|...++|++
T Consensus       435 ~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~  505 (619)
T 3s94_A          435 EEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEV  505 (619)
T ss_dssp             CSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEE
Confidence            4588999999999999999   4899999999999999998899999999999999999999999998873

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.67  E-value=2.4e-16  Score=108.93  Aligned_cols=67  Identities=24%  Similarity=0.410  Sum_probs=62.7

Q ss_pred             eeccceEEeCCCCeEEEeC---CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeee
Q psy4903           6 KFSSGENRTREQALMFVAD---SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd---~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      ..|+|+++||..|.|||+|   +++|+|+.+||+.+++++...+.+|+|||+|+.+++|||+|...++|+
T Consensus       202 ~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~  271 (400)
T 3p5b_L          202 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  271 (400)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEE
Confidence            3488999999999999999   489999999999999999999999999999999999999999988886

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.66  E-value=4e-16  Score=113.36  Aligned_cols=67  Identities=25%  Similarity=0.527  Sum_probs=63.2

Q ss_pred             eeccceEEeCCCCeEEEeC---CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeee
Q psy4903           6 KFSSGENRTREQALMFVAD---SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd---~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      ..|+||++||..|+|||||   +++|+|+.|||+.+++++...+.+|+|||+|+.+++|||+|...++|+
T Consensus       127 ~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~  196 (619)
T 3s94_A          127 DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH  196 (619)
T ss_dssp             SCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEE
T ss_pred             CCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEE
Confidence            4589999999999999999   489999999999999999989999999999999999999999998886

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.64  E-value=6.3e-16  Score=115.31  Aligned_cols=66  Identities=24%  Similarity=0.421  Sum_probs=62.5

Q ss_pred             eccceEEeCCCCeEEEeC--C-CcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeee
Q psy4903           7 FSSGENRTREQALMFVAD--S-NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd--~-~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      .|+|||+||..|.|||+|  . ++|+++.|||+.+.+++...+.+|+|||||+.+++|||+|...++|+
T Consensus       515 ~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~  583 (791)
T 3m0c_C          515 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  583 (791)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEE
Confidence            488999999999999999  3 89999999999999999999999999999999999999999988886

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.64  E-value=6.4e-16  Score=104.34  Aligned_cols=67  Identities=25%  Similarity=0.527  Sum_probs=62.6

Q ss_pred             eeccceEEeCCCCeEEEeC---CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeee
Q psy4903           6 KFSSGENRTREQALMFVAD---SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd---~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      ..|.|+++||..|.|||+|   .++|+|+.+||+.+++++...+.+|+||++|+.+++|||+|...++|+
T Consensus       122 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~  191 (318)
T 3sov_A          122 DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH  191 (318)
T ss_dssp             SSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEE
Confidence            3578999999999999999   489999999999999999889999999999999999999999988886

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.63  E-value=9e-16  Score=104.22  Aligned_cols=67  Identities=19%  Similarity=0.367  Sum_probs=62.7

Q ss_pred             eeccceEEeCCCCeEEEeC--C-CcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeee
Q psy4903           6 KFSSGENRTREQALMFVAD--S-NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd--~-~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      ..|.|+++||..|.|||+|  + ++|+|+.+||+.+++++...+.+|+|||+|+.+++|||+|...++|+
T Consensus       159 ~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~  228 (349)
T 3v64_C          159 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIE  228 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEE
Confidence            4588999999999999999  5 89999999999999999889999999999999999999999988886

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.61  E-value=1.8e-15  Score=110.14  Aligned_cols=67  Identities=24%  Similarity=0.444  Sum_probs=61.6

Q ss_pred             eeccceEEeCCCCeEEEeC---CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeeeC
Q psy4903           6 KFSSGENRTREQALMFVAD---SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET   73 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd---~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie~   73 (73)
                      .-|+|+++||..|.|||+|   +++|+|+.|||+.+++++. .+.+|+||++|..+++|||+|...++|++
T Consensus       123 ~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~  192 (628)
T 4a0p_A          123 DSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIES  192 (628)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEECCCCEEEE
Confidence            3489999999999999999   5899999999999999885 78999999999999999999999988863

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.61  E-value=3.8e-15  Score=99.61  Aligned_cols=67  Identities=24%  Similarity=0.415  Sum_probs=62.1

Q ss_pred             eeccceEEeCCCCeEEEeC--C-CcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeee
Q psy4903           6 KFSSGENRTREQALMFVAD--S-NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd--~-~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      ..|.|+++||..|.|||+|  . ++|+|+.+||+.+++++...+.+|+||++|+.+++|||+|...++|+
T Consensus       120 ~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~  189 (316)
T 1ijq_A          120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  189 (316)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEE
Confidence            4578999999999999999  3 79999999999999998888999999999999999999999988886

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.60  E-value=3.3e-15  Score=102.58  Aligned_cols=67  Identities=19%  Similarity=0.367  Sum_probs=62.8

Q ss_pred             eeccceEEeCCCCeEEEeC--C-CcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeee
Q psy4903           6 KFSSGENRTREQALMFVAD--S-NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd--~-~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      ..|.|+++||..|.|||+|  . ++|+|+.+||+.+++++...+.+|+|||+|+.+++|||+|...++|+
T Consensus       202 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~  271 (386)
T 3v65_B          202 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIE  271 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEE
Confidence            4588999999999999999  4 89999999999999999999999999999999999999999988886

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.46  E-value=3.5e-13  Score=100.60  Aligned_cols=67  Identities=13%  Similarity=0.199  Sum_probs=61.7

Q ss_pred             eeccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCC-Ceee
Q psy4903           6 KFSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLL-DYIE   72 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~-~~ie   72 (73)
                      ..|.||++|+..+.|||+|  +.+|+++.++|+.+++++...+..|.|||||+..++|||+|... .+|+
T Consensus       471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~  540 (791)
T 3m0c_C          471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIK  540 (791)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEE
Confidence            3578999999999999999  68999999999999999999999999999999999999999875 6665

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.46  E-value=4.3e-13  Score=90.99  Aligned_cols=67  Identities=19%  Similarity=0.264  Sum_probs=61.7

Q ss_pred             eeccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCC-Ceee
Q psy4903           6 KFSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLL-DYIE   72 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~-~~ie   72 (73)
                      ..|.|+++|+..|.|||+|  ..+|+++.+||+.+++++...+..|.+||||+.++.|||+|... .+|+
T Consensus       116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~  185 (349)
T 3v64_C          116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE  185 (349)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEE
Confidence            4578999999999999999  68999999999999999988999999999999999999999987 7665

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.44  E-value=5.3e-13  Score=90.00  Aligned_cols=66  Identities=24%  Similarity=0.332  Sum_probs=60.3

Q ss_pred             eeeccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeee
Q psy4903           5 MKFSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus         5 ~~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      +..|.||++||..+.|||+|  ..+|+++.+||+++++++...+..|.||++|  ++.|||+|...++|.
T Consensus       165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~~~~~V~  232 (318)
T 3sov_A          165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDWSTHSIL  232 (318)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEecCCCeEE
Confidence            45689999999999999999  6999999999999999998788999999998  679999999888775

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.43  E-value=9.5e-14  Score=101.88  Aligned_cols=67  Identities=24%  Similarity=0.415  Sum_probs=62.0

Q ss_pred             eeccceEEeCCCCeEEEeC--C-CcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeee
Q psy4903           6 KFSSGENRTREQALMFVAD--S-NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd--~-~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      ..|.|+++||..|+|||+|  . ++|+++.+||+.+++++...+.+|+|||||+.+++|||+|...++|+
T Consensus       496 ~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~  565 (699)
T 1n7d_A          496 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  565 (699)
T ss_dssp             CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred             CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence            4589999999999999999  3 89999999999999998888999999999999999999999988875

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.42  E-value=7.8e-13  Score=91.31  Aligned_cols=67  Identities=16%  Similarity=0.324  Sum_probs=58.7

Q ss_pred             eeccceEEeCCCCeEEEeC--CCcEEEEEcCC----CCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeee
Q psy4903           6 KFSSGENRTREQALMFVAD--SNQILRTNMDG----TMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd--~~~I~ra~ldG----s~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      ..+.|+++|+..+.|||+|  +.+|.|..++|    +..+.++...+..|.||||||.+++|||+|...++|+
T Consensus       112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~  184 (400)
T 3p5b_L          112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS  184 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEE
Confidence            3567899999999999999  69999999999    5678888889999999999999999999999888875

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.42  E-value=7.1e-13  Score=90.94  Aligned_cols=67  Identities=19%  Similarity=0.264  Sum_probs=61.5

Q ss_pred             eeccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCC-Ceee
Q psy4903           6 KFSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLL-DYIE   72 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~-~~ie   72 (73)
                      ..|.|+++||..|.|||+|  ..+|+++.+||+.+.+++...+..|.+|+||+..+.|||+|... .+|+
T Consensus       159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~  228 (386)
T 3v65_B          159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE  228 (386)
T ss_dssp             SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEE
Confidence            3578999999999999999  68999999999999999998999999999999999999999876 6665

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.37  E-value=4.1e-12  Score=84.83  Aligned_cols=67  Identities=13%  Similarity=0.199  Sum_probs=60.6

Q ss_pred             eeccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCC-Ceee
Q psy4903           6 KFSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLL-DYIE   72 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~-~~ie   72 (73)
                      ..|.|+++|+..+.|||+|  ..+|+++.++|..+.+++...+..|.+|++|+.+++|||+|... .+|+
T Consensus        77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~  146 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIK  146 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEE
Confidence            3578999999999999999  68999999999999999888889999999999999999999874 5664

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.29  E-value=2.5e-11  Score=78.10  Aligned_cols=67  Identities=19%  Similarity=0.261  Sum_probs=60.2

Q ss_pred             eeccceEEeCCCCeEEEeC-C---CcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeee
Q psy4903           6 KFSSGENRTREQALMFVAD-S---NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd-~---~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      ..|.|+++||..|.|||++ .   .+|++..+||+.++++....+..|.||++|..+++|||+|...++|.
T Consensus       122 ~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~  192 (267)
T 1npe_A          122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE  192 (267)
T ss_dssp             SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEE
Confidence            4688999999999999999 2   68999999999988888778889999999999999999999888774

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.24  E-value=7.2e-11  Score=75.94  Aligned_cols=67  Identities=27%  Similarity=0.425  Sum_probs=59.8

Q ss_pred             eeccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeee
Q psy4903           6 KFSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      ..+.|+++||..+.|||+|  +.+|.+..++|.....++...+..|.++++|+.+++|||+|...++|.
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~  104 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIE  104 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEE
Confidence            4567999999999999999  689999999998888888777889999999999999999999877764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.14  E-value=4.7e-11  Score=87.66  Aligned_cols=67  Identities=13%  Similarity=0.199  Sum_probs=59.2

Q ss_pred             eeccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCC-Ceee
Q psy4903           6 KFSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLL-DYIE   72 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~-~~ie   72 (73)
                      ..|.|+++|+..|.|||+|  ..+|.++.++|..+.+++...+..|.+||||+..++|||+|... .+|+
T Consensus       453 ~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~  522 (699)
T 1n7d_A          453 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIK  522 (699)
T ss_dssp             --CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEE
T ss_pred             CCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEE
Confidence            3578999999999999999  68999999999999999888889999999999999999999764 5554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.66  E-value=1.7e-07  Score=65.22  Aligned_cols=68  Identities=7%  Similarity=0.075  Sum_probs=57.1

Q ss_pred             eeeccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeC-CCceeeEEEEcCCCCeEEEEeCCCCeee
Q psy4903           5 MKFSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSE-AAYKASGVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus         5 ~~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~-~~~~p~~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      ...|.|+++||..|.||++|  +.+|.+...++.....+... ....|.+|++|+.++.||++|...++|.
T Consensus       225 ~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~  295 (430)
T 3tc9_A          225 GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL  295 (430)
T ss_dssp             CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence            45789999999999999999  68999999998766445443 4467999999999999999999887764

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.62  E-value=3.7e-08  Score=66.27  Aligned_cols=56  Identities=9%  Similarity=0.179  Sum_probs=40.0

Q ss_pred             EEeCCCCeEEEeC---CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEE-eCCCCeee
Q psy4903          12 NRTREQALMFVAD---SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWC-DNLLDYIE   72 (73)
Q Consensus        12 ~~dp~~g~lywtd---~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~-D~~~~~ie   72 (73)
                      +++|..++|||++   +.+|+|+.|||+++++|.+..+  |.   +|+.+++|||+ |.....|+
T Consensus       190 ~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~~--~~---~~~~g~~Iy~~~~~~~~~i~  249 (302)
T 3s25_A          190 PVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEANI--EH---YNVYGSLIFYQRGGDNPALC  249 (302)
T ss_dssp             EEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCSCE--EE---EEEETTEEEEEECSSSCEEE
T ss_pred             eeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCCCc--ce---EEECCCEEEEEECCCCcEEE
Confidence            4668888888887   4688888888888887766544  32   56668888887 44455554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.43  E-value=1.8e-06  Score=59.40  Aligned_cols=60  Identities=12%  Similarity=0.141  Sum_probs=50.2

Q ss_pred             ceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCC--------------CceeeEEEEcCCCCeEEEEeC-CCCee
Q psy4903          10 GENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEA--------------AYKASGVALDINAKRLFWCDN-LLDYI   71 (73)
Q Consensus        10 g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~--------------~~~p~~lavD~~~~~LYW~D~-~~~~i   71 (73)
                      |+++||..|.||++|  +.+|.+...+|. ..++....              +..|.||++|..++ ||++|. ...+|
T Consensus       271 ~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I  347 (409)
T 3hrp_A          271 YLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCL  347 (409)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEE
T ss_pred             cEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEE
Confidence            999999999999999  689999999987 44455443              67899999998765 999998 76665

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.41  E-value=9.2e-07  Score=59.41  Aligned_cols=56  Identities=11%  Similarity=0.161  Sum_probs=45.5

Q ss_pred             EEeCCCCeEEEeC---CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeee
Q psy4903          12 NRTREQALMFVAD---SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus        12 ~~dp~~g~lywtd---~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      .++|..++|||++   ...|+++++||++++.|....   ..  ++...++.|||+|...+.|.
T Consensus       229 ~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~~---~~--~i~i~~d~Iy~td~~~~~i~  287 (302)
T 3s25_A          229 HYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKGE---FC--NINVTSQYVYFTDFVSNKEY  287 (302)
T ss_dssp             EEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEESC---EE--EEEECSSEEEEEETTTCCEE
T ss_pred             eEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCCc---cc--eEEEeCCEEEEEECCCCeEE
Confidence            3799999999984   589999999999999988653   22  45558999999998776664

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.37  E-value=2e-06  Score=59.92  Aligned_cols=68  Identities=9%  Similarity=-0.034  Sum_probs=53.9

Q ss_pred             eeeccceEEeCCCCeEEEeC--CCcEEEEEcC-CCCeEEEEeC-CCceeeEEEEcCCCCeEEEEeCCCCeee
Q psy4903           5 MKFSSGENRTREQALMFVAD--SNQILRTNMD-GTMAMSIVSE-AAYKASGVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus         5 ~~~~~g~~~dp~~g~lywtd--~~~I~ra~ld-Gs~~~~l~~~-~~~~p~~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      ...|.|+++||..|.||++|  +.+|.+...+ |.....++.. ....+.+|++|+.+++||++|....+|.
T Consensus       227 ~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~  298 (433)
T 4hw6_A          227 ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIY  298 (433)
T ss_dssp             CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEE
Confidence            35689999999999999999  6899999998 5542444432 3345678999999999999999877763

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.25  E-value=3.2e-06  Score=55.68  Aligned_cols=66  Identities=15%  Similarity=0.126  Sum_probs=54.2

Q ss_pred             eccceEEeCCCCeEEEeC---CCcEEEEEcCCCCeEEEEe---------CCCceeeEEEEcCCCCeEEEEeCCCCeee
Q psy4903           7 FSSGENRTREQALMFVAD---SNQILRTNMDGTMAMSIVS---------EAAYKASGVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd---~~~I~ra~ldGs~~~~l~~---------~~~~~p~~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      .|.|+++||..|.||.+|   +.+|.+...+|.....+-.         ..+..|.+|++|..+++||.+|...++|.
T Consensus       144 ~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~  221 (329)
T 3fvz_A          144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQ  221 (329)
T ss_dssp             SEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEE
Confidence            588999999999999998   4889999888876555532         24556999999988899999999877764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.21  E-value=3e-06  Score=58.88  Aligned_cols=63  Identities=5%  Similarity=0.041  Sum_probs=53.6

Q ss_pred             eeeeccceEEeC-CCCeEEEeC-CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCC
Q psy4903           4 KMKFSSGENRTR-EQALMFVAD-SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNL   67 (73)
Q Consensus         4 ~~~~~~g~~~dp-~~g~lywtd-~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~   67 (73)
                      ++..|.|+++|| ..|.||++| ..+|.+..+++.....+.. ....|.+|++|..++.||++|..
T Consensus       135 ~~~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~  199 (430)
T 3tc9_A          135 GFGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQ  199 (430)
T ss_dssp             CCSCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECC
T ss_pred             CCCCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCC
Confidence            356899999999 599999999 5889999998866665554 77789999999999999999974

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.06  E-value=2e-05  Score=54.87  Aligned_cols=62  Identities=5%  Similarity=-0.017  Sum_probs=50.2

Q ss_pred             eeeeccceEEeCC--CCeEEEeC-CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCC
Q psy4903           4 KMKFSSGENRTRE--QALMFVAD-SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNL   67 (73)
Q Consensus         4 ~~~~~~g~~~dp~--~g~lywtd-~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~   67 (73)
                      ++..|.|+++||.  .|.|||+| ..+|.+...++.....+. ..+..|.+|++|..++ ||++|..
T Consensus       137 ~~~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~  201 (433)
T 4hw6_A          137 AFDNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQ  201 (433)
T ss_dssp             CCSCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECC
T ss_pred             ccCCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCC
Confidence            3457899999994  89999999 589999998654444443 4777899999999888 9999973

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.01  E-value=4.6e-05  Score=52.35  Aligned_cols=67  Identities=10%  Similarity=0.089  Sum_probs=52.0

Q ss_pred             eeccceEEeCCCCeEEEeC-CCcEEEEEcCCCCeEEE----EeCCC-ceee-EEEEcCCCCeEEEEeCCCCeee
Q psy4903           6 KFSSGENRTREQALMFVAD-SNQILRTNMDGTMAMSI----VSEAA-YKAS-GVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd-~~~I~ra~ldGs~~~~l----~~~~~-~~p~-~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      ..+.|+++||..|.||+++ +.+|.+...++.....+    ..... ..|. +|++|+..++||++|...++|.
T Consensus       219 ~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~  292 (409)
T 3hrp_A          219 GKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVY  292 (409)
T ss_dssp             SCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEE
Confidence            4578999999999999998 78999999987665444    11111 1255 9999998899999999877763

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.90  E-value=5.4e-05  Score=54.39  Aligned_cols=67  Identities=10%  Similarity=0.105  Sum_probs=53.4

Q ss_pred             eeccceEEeCCCCeEEEeC--CCcEEEEEcC--------CCC-----------eEEEEeC-CCceeeEEEEcCCCCeEEE
Q psy4903           6 KFSSGENRTREQALMFVAD--SNQILRTNMD--------GTM-----------AMSIVSE-AAYKASGVALDINAKRLFW   63 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd--~~~I~ra~ld--------Gs~-----------~~~l~~~-~~~~p~~lavD~~~~~LYW   63 (73)
                      ..+.|+++||..|.||+++  +.+|++..++        |..           ...++.. .-.+|.+|++|+.++.||.
T Consensus       247 ~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYv  326 (496)
T 3kya_A          247 KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYF  326 (496)
T ss_dssp             SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEE
Confidence            4689999999999999999  6889999997        332           2233332 3457999999999999999


Q ss_pred             EeCCCCeee
Q psy4903          64 CDNLLDYIE   72 (73)
Q Consensus        64 ~D~~~~~ie   72 (73)
                      +|....+|-
T Consensus       327 aD~~~h~I~  335 (496)
T 3kya_A          327 GVINNHYFM  335 (496)
T ss_dssp             EETTTTEEE
T ss_pred             EeCCCCEEE
Confidence            999877763

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=97.85  E-value=6.2e-05  Score=49.45  Aligned_cols=65  Identities=14%  Similarity=0.192  Sum_probs=50.4

Q ss_pred             eeccceEEeCCCCeEEEeC--CCcEEEEEcCCCC--eEEEE--------eCCCceeeEEEEcCCCCeEEEEeC-CCCee
Q psy4903           6 KFSSGENRTREQALMFVAD--SNQILRTNMDGTM--AMSIV--------SEAAYKASGVALDINAKRLFWCDN-LLDYI   71 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~--~~~l~--------~~~~~~p~~lavD~~~~~LYW~D~-~~~~i   71 (73)
                      ..|.|+++|| .|.+|.++  +.+|.+...+|..  ...+-        ...+..|.++++|+...+||.+|. ..++|
T Consensus        91 ~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I  168 (329)
T 3fvz_A           91 YLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI  168 (329)
T ss_dssp             SSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred             CCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence            3678999997 45599999  6899999999873  33332        245668999999988899999996 56655

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.81  E-value=8.2e-05  Score=46.56  Aligned_cols=64  Identities=11%  Similarity=0.221  Sum_probs=49.9

Q ss_pred             eeccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           6 KFSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      ..+.|+++|| .|.+|+++  +..|.+...+|..........+..|.+|++|..+ +||+++...+.|
T Consensus       150 ~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v  215 (270)
T 1rwi_B          150 NDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQV  215 (270)
T ss_dssp             CSCCCEEECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC-CEEEEETTTSCE
T ss_pred             CCceeEEEeC-CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCC-CEEEEECCCCcE
Confidence            3578999999 55699998  5789999988876555444566789999999766 899999765544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.73  E-value=8.6e-05  Score=48.53  Aligned_cols=66  Identities=9%  Similarity=0.185  Sum_probs=49.3

Q ss_pred             eeeccceEEeCCCCeEEEeC-C------------------CcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEe
Q psy4903           5 MKFSSGENRTREQALMFVAD-S------------------NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD   65 (73)
Q Consensus         5 ~~~~~g~~~dp~~g~lywtd-~------------------~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D   65 (73)
                      +.++.++++||..|.+|++| .                  ..|.+...++.....+ ...+..|+||+++..++.||.+|
T Consensus       125 ~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-~~~~~~p~gia~~~dg~~lyv~d  203 (322)
T 2fp8_A          125 FKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL-LKELHVPGGAEVSADSSFVLVAE  203 (322)
T ss_dssp             CSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE-EEEESCCCEEEECTTSSEEEEEE
T ss_pred             ccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe-ccCCccCcceEECCCCCEEEEEe
Confidence            34678899999778999987 2                  3577776654333333 34577899999999889999999


Q ss_pred             CCCCee
Q psy4903          66 NLLDYI   71 (73)
Q Consensus        66 ~~~~~i   71 (73)
                      ...++|
T Consensus       204 ~~~~~I  209 (322)
T 2fp8_A          204 FLSHQI  209 (322)
T ss_dssp             GGGTEE
T ss_pred             CCCCeE
Confidence            876655

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.61  E-value=0.00031  Score=45.80  Aligned_cols=58  Identities=21%  Similarity=0.222  Sum_probs=45.1

Q ss_pred             eeccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCC
Q psy4903           6 KFSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNL   67 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~   67 (73)
                      .++.|+++|| .|.|||+|  +.+|.+...+|.. ..++.. -..|.+|++|..++ ||.+|..
T Consensus        32 ~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~~-~~~~~~-~~~p~gia~~~dG~-l~vad~~   91 (306)
T 2p4o_A           32 TFLENLASAP-DGTIFVTNHEVGEIVSITPDGNQ-QIHATV-EGKVSGLAFTSNGD-LVATGWN   91 (306)
T ss_dssp             CCEEEEEECT-TSCEEEEETTTTEEEEECTTCCE-EEEEEC-SSEEEEEEECTTSC-EEEEEEC
T ss_pred             CCcceEEECC-CCCEEEEeCCCCeEEEECCCCce-EEEEeC-CCCceeEEEcCCCc-EEEEecc
Confidence            5688999999 67899999  6899999988853 333332 35799999997665 8999854

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.59  E-value=0.00024  Score=44.40  Aligned_cols=65  Identities=15%  Similarity=0.182  Sum_probs=51.2

Q ss_pred             eeccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeee
Q psy4903           6 KFSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      ..+.|+++||. |.+|+++  +.+|.+...+|.....+....+..|.++++|..+ +||.++...++|.
T Consensus       192 ~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~v~  258 (270)
T 1rwi_B          192 TAPWGIAVDEA-GTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDR-TVYVADRGNDRVV  258 (270)
T ss_dssp             CSEEEEEECTT-CCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTC-CEEEEEGGGTEEE
T ss_pred             CCceEEEECCC-CCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCC-CEEEEECCCCEEE
Confidence            34678999986 5899998  6789999998876655444456789999999766 5999998877664

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.59  E-value=0.00017  Score=48.89  Aligned_cols=63  Identities=11%  Similarity=0.107  Sum_probs=50.4

Q ss_pred             eccceEEeCCCCeEEEeC---------------CCcEEEEEcCCCC-------eEEEEeCCCceeeEEEEcCCCCeEEEE
Q psy4903           7 FSSGENRTREQALMFVAD---------------SNQILRTNMDGTM-------AMSIVSEAAYKASGVALDINAKRLFWC   64 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd---------------~~~I~ra~ldGs~-------~~~l~~~~~~~p~~lavD~~~~~LYW~   64 (73)
                      ++.+|+++| .|+||.+.               ..+|.|...||+-       ...++...+..|.||++|....+||.+
T Consensus       136 ~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~  214 (354)
T 3a9g_A          136 NGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVAT  214 (354)
T ss_dssp             CCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEE
T ss_pred             CCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEE
Confidence            467899999 67899985               1489999999971       234566789999999999988899999


Q ss_pred             eCCCCe
Q psy4903          65 DNLLDY   70 (73)
Q Consensus        65 D~~~~~   70 (73)
                      |...+.
T Consensus       215 d~g~~~  220 (354)
T 3a9g_A          215 EHGPVG  220 (354)
T ss_dssp             ECCSSS
T ss_pred             ecCCCC
Confidence            987543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.51  E-value=0.00026  Score=47.82  Aligned_cols=61  Identities=16%  Similarity=0.218  Sum_probs=50.0

Q ss_pred             eccceEEeCCCCeEEEeC---------------CCcEEEEEcCCC------------CeEEEEeCCCceeeEEEEcCCCC
Q psy4903           7 FSSGENRTREQALMFVAD---------------SNQILRTNMDGT------------MAMSIVSEAAYKASGVALDINAK   59 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd---------------~~~I~ra~ldGs------------~~~~l~~~~~~~p~~lavD~~~~   59 (73)
                      ++.+|+++| .|+||.+.               ..+|.|...||+            ....++...+.+|.|+++|....
T Consensus       131 ~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g  209 (353)
T 2g8s_A          131 FGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSN  209 (353)
T ss_dssp             CCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTT
T ss_pred             cCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCC
Confidence            367899999 67999995               148999999997            13445667899999999999889


Q ss_pred             eEEEEeCCC
Q psy4903          60 RLFWCDNLL   68 (73)
Q Consensus        60 ~LYW~D~~~   68 (73)
                      +||.+|...
T Consensus       210 ~l~~~d~g~  218 (353)
T 2g8s_A          210 ALWLNEHGP  218 (353)
T ss_dssp             EEEEEEECS
T ss_pred             CEEEEecCC
Confidence            999999864

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.42  E-value=0.00073  Score=48.55  Aligned_cols=67  Identities=15%  Similarity=0.191  Sum_probs=52.4

Q ss_pred             eeeecc-ceEEeC------CCCeEEEeC--CCcEEEEEcCCCCeEEEEeC-----------------------CCceeeE
Q psy4903           4 KMKFSS-GENRTR------EQALMFVAD--SNQILRTNMDGTMAMSIVSE-----------------------AAYKASG   51 (73)
Q Consensus         4 ~~~~~~-g~~~dp------~~g~lywtd--~~~I~ra~ldGs~~~~l~~~-----------------------~~~~p~~   51 (73)
                      ++..|. |+++|.      ..|.||.+|  +.+|.+...+| ...++...                       .+..|.|
T Consensus       370 ~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~g  448 (496)
T 3kya_A          370 RMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSG  448 (496)
T ss_dssp             BCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEE
T ss_pred             ccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcE
Confidence            345677 788874      678999999  78999988888 44455432                       3667999


Q ss_pred             EEEcCCCCeEEEEeCCCCee
Q psy4903          52 VALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus        52 lavD~~~~~LYW~D~~~~~i   71 (73)
                      |++|..+..||-+|..-.+|
T Consensus       449 Iavd~~~g~lyVaD~~N~rI  468 (496)
T 3kya_A          449 LVYDDVKEMFYVHDQVGHTI  468 (496)
T ss_dssp             EEEETTTTEEEEEETTTTEE
T ss_pred             EEEECCCCEEEEEeCCCCEE
Confidence            99998778999999987766

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.39  E-value=0.00073  Score=44.63  Aligned_cols=59  Identities=17%  Similarity=0.278  Sum_probs=45.1

Q ss_pred             eccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeC--------CCceeeEEEEcCCCCeEEEEeC
Q psy4903           7 FSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSE--------AAYKASGVALDINAKRLFWCDN   66 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~--------~~~~p~~lavD~~~~~LYW~D~   66 (73)
                      =++|+++||.+|.+|-.+  ++.+.....+|.-...+--.        .+.+|+|||+|..+ +||-+..
T Consensus       174 d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G-~lyIvsE  242 (255)
T 3qqz_A          174 DVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG-NIYIVSE  242 (255)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTC-CEEEEET
T ss_pred             CceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCC-CEEEEcC
Confidence            368999999999999887  68898888888743333211        35799999999866 5887743

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.38  E-value=0.00022  Score=48.08  Aligned_cols=63  Identities=16%  Similarity=0.177  Sum_probs=48.9

Q ss_pred             eccceEEeCCCCeEEEeC---------------CCcEEEEEcCCC------------CeEEEEeCCCceeeEEEEcCCCC
Q psy4903           7 FSSGENRTREQALMFVAD---------------SNQILRTNMDGT------------MAMSIVSEAAYKASGVALDINAK   59 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd---------------~~~I~ra~ldGs------------~~~~l~~~~~~~p~~lavD~~~~   59 (73)
                      .+.+++++| .|+||.++               ..+|.|...||+            ....++...+..|.|+++|....
T Consensus       136 ~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g  214 (352)
T 2ism_A          136 SGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTG  214 (352)
T ss_dssp             CCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTC
T ss_pred             CCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCC
Confidence            457899999 57999996               148999999983            13334566889999999999888


Q ss_pred             eEEEEeCCCCe
Q psy4903          60 RLFWCDNLLDY   70 (73)
Q Consensus        60 ~LYW~D~~~~~   70 (73)
                      +||.+|...+.
T Consensus       215 ~l~v~d~g~~~  225 (352)
T 2ism_A          215 ELFSSEHGPSG  225 (352)
T ss_dssp             CEEEEEECC--
T ss_pred             CEEEEEcCCCC
Confidence            99999987654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.31  E-value=0.00069  Score=43.78  Aligned_cols=61  Identities=10%  Similarity=0.133  Sum_probs=45.1

Q ss_pred             ccceEEeCCCCeEEEeC--C-----------CcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           8 SSGENRTREQALMFVAD--S-----------NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd--~-----------~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      +.++++||. |.+|.++  .           ..|++...+|...  .+...+..|+|+++++.++.|||+|...++|
T Consensus       100 ~~di~~d~d-G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~--~~~~~~~~pngi~~spdg~~lyv~~~~~~~i  173 (297)
T 3g4e_A          100 FNDGKVDPA-GRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK--KYFDQVDISNGLDWSLDHKIFYYIDSLSYSV  173 (297)
T ss_dssp             EEEEEECTT-SCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE--EEEEEESBEEEEEECTTSCEEEEEEGGGTEE
T ss_pred             CCCEEECCC-CCEEEecCCcccccccccCCCcEEEEEECCCCEE--EEeeccccccceEEcCCCCEEEEecCCCCcE
Confidence            466888984 6677775  1           3688877776433  3445677899999999999999999876655

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.27  E-value=0.0018  Score=41.23  Aligned_cols=64  Identities=16%  Similarity=0.240  Sum_probs=49.0

Q ss_pred             eeeccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           5 MKFSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         5 ~~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      ..++.|.+.||..+.+||++  +..|.+-+.++. .+ .+......|.++++|..+ +||.++...+.|
T Consensus        27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~-~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i   92 (296)
T 3e5z_A           27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LS-PEMHPSHHQNGHCLNKQG-HLIACSHGLRRL   92 (296)
T ss_dssp             CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EE-EEESSCSSEEEEEECTTC-CEEEEETTTTEE
T ss_pred             CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eE-EEECCCCCcceeeECCCC-cEEEEecCCCeE
Confidence            35678999999988899999  689999999886 43 444455679999999755 588888654433

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=97.21  E-value=0.002  Score=41.64  Aligned_cols=57  Identities=14%  Similarity=0.254  Sum_probs=42.5

Q ss_pred             ccceEEeCCCCeEEEeC-------------------CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCC
Q psy4903           8 SSGENRTREQALMFVAD-------------------SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNL   67 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd-------------------~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~   67 (73)
                      +.++++|| .|.+|+||                   ...|.+...++.....+.  .+..|+|+++++.++.||++|..
T Consensus       133 ~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~  208 (305)
T 3dr2_A          133 PNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTP  208 (305)
T ss_dssp             CCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECC
T ss_pred             CCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecC
Confidence            56788998 67788875                   146888777433333333  67789999999999999999986

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.21  E-value=0.0018  Score=40.57  Aligned_cols=63  Identities=11%  Similarity=0.211  Sum_probs=46.8

Q ss_pred             eccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           7 FSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      .+.|+++|| .|.+|.++  ...|.+...+|.............|.+|++|..+ +||.++...+.|
T Consensus       189 ~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i  253 (300)
T 2qc5_A          189 APVGITSGN-DGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNS-EIWFTEWGANQI  253 (300)
T ss_dssp             CEEEEEECT-TSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEE
T ss_pred             CcceEEECC-CCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCC-CEEEeccCCCeE
Confidence            467899998 67899998  4679998887655444344456789999999764 599998664444

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=97.17  E-value=0.0024  Score=41.27  Aligned_cols=63  Identities=25%  Similarity=0.366  Sum_probs=47.2

Q ss_pred             eeccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           6 KFSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      .++.|.+.+|..+.|||++  +.+|.+-..+|.  ...+......|+++++|..+ +||.++...+.|
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~--~~~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v  109 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT--VDVLLDATAFTNGNAVDAQQ-RLVHCEHGRRAI  109 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC--EEEEEESCSCEEEEEECTTS-CEEEEETTTTEE
T ss_pred             cCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC--EEEEeCCCCccceeeECCCC-CEEEEECCCCEE
Confidence            4567899999988999999  688999888765  23333445679999999865 588888764443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.16  E-value=0.001  Score=43.99  Aligned_cols=61  Identities=15%  Similarity=0.177  Sum_probs=47.6

Q ss_pred             eccceEEeCCCCeEEEeC--CCcEEEEEc-CCCCeEEEEeC-CCceeeEEEEcCCCCeEEEEeCCCCe
Q psy4903           7 FSSGENRTREQALMFVAD--SNQILRTNM-DGTMAMSIVSE-AAYKASGVALDINAKRLFWCDNLLDY   70 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd--~~~I~ra~l-dGs~~~~l~~~-~~~~p~~lavD~~~~~LYW~D~~~~~   70 (73)
                      .|.|+++|+. |.||.++  +.+|.+-+. +|. ...+... .+..|.+++++.. +.||.++...++
T Consensus       249 ~pdgia~d~~-G~l~va~~~~~~V~~~d~~~G~-~~~~~~~~~~~~p~~va~~~~-g~l~v~~~~~~~  313 (343)
T 2qe8_A          249 ICDGISIDKD-HNIYVGDLAHSAIGVITSADRA-YKLLVTDEKLSWTDSFNFGSD-GYLYFDCNQLHH  313 (343)
T ss_dssp             SCSCEEECTT-CCEEEEEGGGTEEEEEETTTTE-EEEEEECGGGSCEEEEEECTT-SCEEEEECCGGG
T ss_pred             CCceEEECCC-CCEEEEccCCCeEEEEECCCCC-EEEEEECCceecCCeeEECCC-CcEEEEeCcccc
Confidence            5789999995 8999998  689999998 775 3444443 4778999999864 679999876543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.09  E-value=0.0024  Score=43.89  Aligned_cols=59  Identities=22%  Similarity=0.274  Sum_probs=48.3

Q ss_pred             ccceEEeCCCCeEEEeC---------------CCcEEEEEcCCC--------CeEEEEeCCCceeeEEEEcCCCCeEEEE
Q psy4903           8 SSGENRTREQALMFVAD---------------SNQILRTNMDGT--------MAMSIVSEAAYKASGVALDINAKRLFWC   64 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd---------------~~~I~ra~ldGs--------~~~~l~~~~~~~p~~lavD~~~~~LYW~   64 (73)
                      .++|+++| .|+||++.               ..+|.|.+.||+        .. .++...+.+|.|+++|. ...||.+
T Consensus       142 g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~-~i~a~G~RNp~Gla~dp-~G~L~~~  218 (347)
T 3das_A          142 GGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGS-PVYSYGHRNVQGLAWDD-KQRLFAS  218 (347)
T ss_dssp             CCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTC-CEEEBCCSBCCEEEECT-TCCEEEE
T ss_pred             CccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCC-eEEeeCCCCcceEEECC-CCCEEEE
Confidence            35588888 57999983               379999999998        43 46778999999999998 6899999


Q ss_pred             eCCCC
Q psy4903          65 DNLLD   69 (73)
Q Consensus        65 D~~~~   69 (73)
                      |...+
T Consensus       219 d~g~~  223 (347)
T 3das_A          219 EFGQD  223 (347)
T ss_dssp             ECCSS
T ss_pred             ecCCC
Confidence            98654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.08  E-value=0.0029  Score=40.81  Aligned_cols=66  Identities=15%  Similarity=0.228  Sum_probs=47.0

Q ss_pred             eeeccceEEeCCCCeEEEeC--CCcEEEEEcC---CC--CeEEEEeC--CCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           5 MKFSSGENRTREQALMFVAD--SNQILRTNMD---GT--MAMSIVSE--AAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         5 ~~~~~g~~~dp~~g~lywtd--~~~I~ra~ld---Gs--~~~~l~~~--~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      +..+.|++++|....|||++  ..+|.+..+|   |.  +++++..-  ....|.|+++|..+ +||-++...++|
T Consensus       148 ~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v  222 (297)
T 3g4e_A          148 VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRV  222 (297)
T ss_dssp             ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEE
T ss_pred             cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEE
Confidence            34688999999999999999  6889998875   32  23344332  33579999999765 677776554433

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.07  E-value=0.0041  Score=40.45  Aligned_cols=60  Identities=15%  Similarity=0.342  Sum_probs=45.1

Q ss_pred             eeeccceEEeCCCCeEEEeC--CCcEEEEEcCCC---CeEEEEeCCCceeeEEEEcCCCCeEEEEeCC
Q psy4903           5 MKFSSGENRTREQALMFVAD--SNQILRTNMDGT---MAMSIVSEAAYKASGVALDINAKRLFWCDNL   67 (73)
Q Consensus         5 ~~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs---~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~   67 (73)
                      +..|.|++++|..+.||.++  +.+|.+..++|.   ..+.+.. ... |.++++|..+ +||-++..
T Consensus       184 ~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G-~l~va~~~  248 (322)
T 2fp8_A          184 LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADG-HFWVSSSE  248 (322)
T ss_dssp             ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTS-CEEEEEEE
T ss_pred             CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCC-CEEEEecC
Confidence            35789999999988999998  589999999973   3344333 223 9999999765 57776643

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.05  E-value=0.0033  Score=39.67  Aligned_cols=63  Identities=21%  Similarity=0.324  Sum_probs=47.2

Q ss_pred             eccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeC-CCceeeEEEEcCCCCeEEEEeCCCC-ee
Q psy4903           7 FSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSE-AAYKASGVALDINAKRLFWCDNLLD-YI   71 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~-~~~~p~~lavD~~~~~LYW~D~~~~-~i   71 (73)
                      .+.|+++||. |.+|.++  +..|.+-..+|.....+-.. .+..|.+|++|..+ +||.++...+ +|
T Consensus       165 ~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i  231 (286)
T 1q7f_A          165 FPNGVVVNDK-QEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNL  231 (286)
T ss_dssp             SEEEEEECSS-SEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEE
T ss_pred             CcEEEEECCC-CCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCC-CEEEEeCCCCEEE
Confidence            5789999994 6799998  68899998888654444332 25789999999754 7999887654 44

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=96.99  E-value=0.0038  Score=38.99  Aligned_cols=63  Identities=14%  Similarity=0.165  Sum_probs=45.4

Q ss_pred             eccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           7 FSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      .+.++++|| .|.+|.++  +..|.+...+|.............|.++++|..++ ||.++...+.|
T Consensus       105 ~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i  169 (300)
T 2qc5_A          105 GPYGITEGL-NGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSI  169 (300)
T ss_dssp             CEEEEEECS-TTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEE
T ss_pred             CCccceECC-CCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCC-EEEEecCCCeE
Confidence            356888887 67888888  57899988886544333334567899999997654 99988754443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=96.92  E-value=0.0051  Score=38.80  Aligned_cols=64  Identities=16%  Similarity=0.210  Sum_probs=48.4

Q ss_pred             eccceEEeCCCCeEEEeC---CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           7 FSSGENRTREQALMFVAD---SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd---~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      .+.++++++..|.+|.++   +..|.+-..+|.....+-......|.++++|..+ +||.++...+.|
T Consensus        78 ~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i  144 (286)
T 1q7f_A           78 YPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRV  144 (286)
T ss_dssp             SEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEE
T ss_pred             CceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCC-CEEEEECCCCEE
Confidence            567889988889999998   4788888777765544433456789999999865 699998765544

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.81  E-value=0.0035  Score=40.72  Aligned_cols=60  Identities=17%  Similarity=0.320  Sum_probs=44.4

Q ss_pred             eccceEEeCCCCeEEEeC--CCcEEEEEcCC--C--CeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           7 FSSGENRTREQALMFVAD--SNQILRTNMDG--T--MAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd--~~~I~ra~ldG--s--~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      .+.|+  +|..+.||+++  +.+|.+..+++  .  ..+++..  ...|.+|++|..+ +||-++...++|
T Consensus       170 ~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG-~l~va~~~~~~V  235 (306)
T 2p4o_A          170 AANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEG-NLYGATHIYNSV  235 (306)
T ss_dssp             SEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTC-CEEEECBTTCCE
T ss_pred             cCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCC-CEEEEeCCCCeE
Confidence            56676  77778999999  68999999985  2  2343332  3579999999765 688888766554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=96.76  E-value=0.0033  Score=41.29  Aligned_cols=58  Identities=12%  Similarity=0.206  Sum_probs=43.4

Q ss_pred             eccceEEeCCCCeEEEeCCCcEEEEEcCCCCeE--EEEeCCCceeeEEEEcCCCCeEEEEe
Q psy4903           7 FSSGENRTREQALMFVADSNQILRTNMDGTMAM--SIVSEAAYKASGVALDINAKRLFWCD   65 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd~~~I~ra~ldGs~~~--~l~~~~~~~p~~lavD~~~~~LYW~D   65 (73)
                      .|.+++++|..+.||.++. .|.+...+.....  .++......|.++++|+.+++||-++
T Consensus       226 ~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          226 WPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             CCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred             CceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence            3789999999999999876 7887776543211  11222246799999999899999998

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.71  E-value=0.0036  Score=43.92  Aligned_cols=61  Identities=16%  Similarity=0.207  Sum_probs=48.8

Q ss_pred             eccceEEeCCCCeEEEeC----------------------------------CCcEEEEEcCCCC----------eEEEE
Q psy4903           7 FSSGENRTREQALMFVAD----------------------------------SNQILRTNMDGTM----------AMSIV   42 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd----------------------------------~~~I~ra~ldGs~----------~~~l~   42 (73)
                      ++.+|+++| .|+||.+.                                  ..+|.|.+.||+-          +..++
T Consensus       145 ~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~  223 (454)
T 1cru_A          145 QSGRLVIGP-DQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIY  223 (454)
T ss_dssp             CEEEEEECT-TSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEE
T ss_pred             CCCeEeECC-CCeEEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEE
Confidence            357788888 67899973                                  1469999999972          44567


Q ss_pred             eCCCceeeEEEEcCCCCeEEEEeCCCC
Q psy4903          43 SEAAYKASGVALDINAKRLFWCDNLLD   69 (73)
Q Consensus        43 ~~~~~~p~~lavD~~~~~LYW~D~~~~   69 (73)
                      ...+.+|.|+++|. ...||-+|...+
T Consensus       224 a~G~RNp~gla~dp-~G~L~~~d~g~~  249 (454)
T 1cru_A          224 TLGHRNPQGLAFTP-NGKLLQSEQGPN  249 (454)
T ss_dssp             EBCCSEEEEEEECT-TSCEEEEEECSS
T ss_pred             EECCCCcceEEECC-CCCEEEEecCCC
Confidence            78999999999998 689999997643

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=96.63  E-value=0.017  Score=36.61  Aligned_cols=61  Identities=18%  Similarity=0.160  Sum_probs=45.3

Q ss_pred             eccceEEeCCCCeEEEeC-------------------CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCC
Q psy4903           7 FSSGENRTREQALMFVAD-------------------SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNL   67 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd-------------------~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~   67 (73)
                      .+.++++|| .|.+|.+|                   ...|.+...+|.  ...+...+..|+++++++.++.| |++..
T Consensus       116 ~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~--~~~~~~~~~~~~gi~~s~dg~~l-v~~~~  191 (296)
T 3e5z_A          116 SPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT--LSAPIRDRVKPNGLAFLPSGNLL-VSDTG  191 (296)
T ss_dssp             CCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC--EEEEECCCSSEEEEEECTTSCEE-EEETT
T ss_pred             CCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCCCC--EEEeecCCCCCccEEECCCCCEE-EEeCC
Confidence            356789998 67788864                   137888877743  33445677889999999988888 99987


Q ss_pred             CCee
Q psy4903          68 LDYI   71 (73)
Q Consensus        68 ~~~i   71 (73)
                      .+.|
T Consensus       192 ~~~i  195 (296)
T 3e5z_A          192 DNAT  195 (296)
T ss_dssp             TTEE
T ss_pred             CCeE
Confidence            6655

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.62  E-value=0.0049  Score=41.67  Aligned_cols=58  Identities=9%  Similarity=0.110  Sum_probs=44.9

Q ss_pred             eeccceEEeCCCCeEEEeC-CCcEEEEEcCCCCeEEEE-----eCCCceeeEEEEcCC---CCeEEEEeC
Q psy4903           6 KFSSGENRTREQALMFVAD-SNQILRTNMDGTMAMSIV-----SEAAYKASGVALDIN---AKRLFWCDN   66 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd-~~~I~ra~ldGs~~~~l~-----~~~~~~p~~lavD~~---~~~LYW~D~   66 (73)
                      ..|.|++++| .|.||.++ ..+|.+..-+|.  +.+.     ......|.||++++.   ++.||.++.
T Consensus        29 ~~P~~ia~~p-dG~l~V~e~~g~I~~~d~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~   95 (354)
T 3a9g_A           29 EVPWSIAPLG-GGRYLVTERPGRLVLISPSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYAS   95 (354)
T ss_dssp             SCEEEEEEEE-TTEEEEEETTTEEEEECSSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CCCeEEEEcC-CCeEEEEeCCCEEEEEeCCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEe
Confidence            4688999999 57899999 789998876665  3332     234567999999987   789999875

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.59  E-value=0.011  Score=36.85  Aligned_cols=63  Identities=17%  Similarity=0.212  Sum_probs=44.8

Q ss_pred             eccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           7 FSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      .+.++++|| .|.+|.++  +..|.+...+|.............|.++++|..+ +||.++...+.|
T Consensus       100 ~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i  164 (299)
T 2z2n_A          100 APYGITEGP-NGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDN-ALWFTENQNNAI  164 (299)
T ss_dssp             CEEEEEECT-TSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEE
T ss_pred             CceeeEECC-CCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCC-CEEEEeCCCCEE
Confidence            467888997 57888887  5789888886655444334456689999999654 788888654433

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.56  E-value=0.013  Score=36.50  Aligned_cols=63  Identities=11%  Similarity=0.200  Sum_probs=44.2

Q ss_pred             eccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           7 FSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      .+.|+++||. |.+|.++  ...|.+...+|.............|.++++|..+ +||.++...+.|
T Consensus       184 ~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i  248 (299)
T 2z2n_A          184 GPVGITKGND-DALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGI-DLWFTEWGANKI  248 (299)
T ss_dssp             CEEEEEECTT-SSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEE
T ss_pred             cceeEEECCC-CCEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCC-CEEEeccCCceE
Confidence            3568889986 6788887  5789988886653332233355689999999764 588888654443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=96.55  E-value=0.024  Score=37.30  Aligned_cols=65  Identities=12%  Similarity=0.295  Sum_probs=44.6

Q ss_pred             eccceEEeCCCCeEEEeC-----CCcEEEEEcCCCCeEEEEeC----------------C-------------CceeeEE
Q psy4903           7 FSSGENRTREQALMFVAD-----SNQILRTNMDGTMAMSIVSE----------------A-------------AYKASGV   52 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd-----~~~I~ra~ldGs~~~~l~~~----------------~-------------~~~p~~l   52 (73)
                      ++.++++||..|.+|.+|     ...|....++......++..                .             ...|+||
T Consensus       121 ~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gi  200 (343)
T 2qe8_A          121 FVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGI  200 (343)
T ss_dssp             CCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEE
T ss_pred             ccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceeccccee
Confidence            568999999999999997     25677777653222221210                0             1248999


Q ss_pred             EEcCCCCeEEEEeCCCCee
Q psy4903          53 ALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus        53 avD~~~~~LYW~D~~~~~i   71 (73)
                      ++++.++.||+++....++
T Consensus       201 a~s~dg~~ly~~~~~~~~l  219 (343)
T 2qe8_A          201 VLDAENEWLYLSPMHSTSM  219 (343)
T ss_dssp             EECTTSCEEEEEESSCSEE
T ss_pred             EeccCCCEEEEEeCCCCeE
Confidence            9999999999998765443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.51  E-value=0.011  Score=40.70  Aligned_cols=58  Identities=14%  Similarity=0.288  Sum_probs=43.5

Q ss_pred             eeeccceEEeCCCCeEEEeC--CCcEEEEEcCCCCe---EEEEeCCCceeeEEEEcCCCCeEEE
Q psy4903           5 MKFSSGENRTREQALMFVAD--SNQILRTNMDGTMA---MSIVSEAAYKASGVALDINAKRLFW   63 (73)
Q Consensus         5 ~~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~---~~l~~~~~~~p~~lavD~~~~~LYW   63 (73)
                      +.+|.|++++|....||.+|  ..+|.+-.+++.+.   ..++. .-..|.|+++|....+||-
T Consensus       220 l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwv  282 (355)
T 3sre_A          220 FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWV  282 (355)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEE
T ss_pred             CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEE
Confidence            56899999999999999999  68999999874321   12333 3468999999974345554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.49  E-value=0.022  Score=37.45  Aligned_cols=60  Identities=10%  Similarity=0.076  Sum_probs=44.3

Q ss_pred             ccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCC
Q psy4903           8 SSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLL   68 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~   68 (73)
                      .||++.||..+.||=..  .++|.+...+|.-...+--.+...++||+++. .+.++-++...
T Consensus        29 lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~   90 (255)
T 3qqz_A           29 ISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIG-DNQFVISDERD   90 (255)
T ss_dssp             EEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECS-TTEEEEEETTT
T ss_pred             cceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeC-CCEEEEEECCC
Confidence            58999999999888754  68999999998766665445667899999983 33444444443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=96.39  E-value=0.01  Score=37.55  Aligned_cols=62  Identities=16%  Similarity=0.147  Sum_probs=44.6

Q ss_pred             eccceEEeCCCCeEEEeC--C---------------CcEEEEEcCCCCeEEEEeCCCceeeEEEEc----CCCCeEEEEe
Q psy4903           7 FSSGENRTREQALMFVAD--S---------------NQILRTNMDGTMAMSIVSEAAYKASGVALD----INAKRLFWCD   65 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd--~---------------~~I~ra~ldGs~~~~l~~~~~~~p~~lavD----~~~~~LYW~D   65 (73)
                      .+.++++||. |.+|.++  .               ..|.+...+|.-. . +......|.+++++    ..++.||+++
T Consensus       118 ~~~~i~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~-~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~  194 (314)
T 1pjx_A          118 GCNDCAFDYE-GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMI-Q-VDTAFQFPNGIAVRHMNDGRPYQLIVAE  194 (314)
T ss_dssp             CCCEEEECTT-SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEE-E-EEEEESSEEEEEEEECTTSCEEEEEEEE
T ss_pred             CCcCEEECCC-CCEEEEecCcccccccccccccCCCCeEEEECCCCCEE-E-eccCCCCcceEEEecccCCCCCEEEEEE
Confidence            4678889984 6788887  2               4688887775432 2 22345679999999    8778899998


Q ss_pred             CCCCee
Q psy4903          66 NLLDYI   71 (73)
Q Consensus        66 ~~~~~i   71 (73)
                      ...+.|
T Consensus       195 ~~~~~i  200 (314)
T 1pjx_A          195 TPTKKL  200 (314)
T ss_dssp             TTTTEE
T ss_pred             CCCCeE
Confidence            765554

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.18  E-value=0.0029  Score=43.55  Aligned_cols=63  Identities=13%  Similarity=0.103  Sum_probs=43.9

Q ss_pred             eeccceEEeCCCCe-----EEEeC-------------CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCC
Q psy4903           6 KFSSGENRTREQAL-----MFVAD-------------SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNL   67 (73)
Q Consensus         6 ~~~~g~~~dp~~g~-----lywtd-------------~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~   67 (73)
                      ..+..+++||..++     +|++|             ..+++|..-  ...+ ++..++..|+||++++.++.||.+|..
T Consensus       165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt~  241 (355)
T 3sre_A          165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVR-VVAEGFDFANGINISPDGKYVYIAELL  241 (355)
T ss_dssp             SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCE-EEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEE-EeecCCcccCcceECCCCCEEEEEeCC
Confidence            45677888885432     34443             145777654  2333 445678899999999999999999987


Q ss_pred             CCee
Q psy4903          68 LDYI   71 (73)
Q Consensus        68 ~~~i   71 (73)
                      .++|
T Consensus       242 ~~~I  245 (355)
T 3sre_A          242 AHKI  245 (355)
T ss_dssp             GTEE
T ss_pred             CCeE
Confidence            7665

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.07  E-value=0.015  Score=38.99  Aligned_cols=59  Identities=12%  Similarity=0.142  Sum_probs=44.9

Q ss_pred             eeccceEEeCCCCeEEEeC-CCcEEEEEcCCCCeEEEE-----eCCCceeeEEEEcCC---CCeEEEEeCC
Q psy4903           6 KFSSGENRTREQALMFVAD-SNQILRTNMDGTMAMSIV-----SEAAYKASGVALDIN---AKRLFWCDNL   67 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd-~~~I~ra~ldGs~~~~l~-----~~~~~~p~~lavD~~---~~~LYW~D~~   67 (73)
                      ..|.|++++|. |.||.++ ..+|.+.. +|.. +.+.     ......|.||++++.   ++.||.++..
T Consensus        31 ~~P~~ia~~pd-G~l~V~e~~g~I~~i~-~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~   98 (352)
T 2ism_A           31 EVPWALAFLPD-GGMLIAERPGRIRLFR-EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTV   98 (352)
T ss_dssp             SCEEEEEECTT-SCEEEEETTTEEEEEE-TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred             CCceEEEEcCC-CeEEEEeCCCeEEEEE-CCCc-cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEec
Confidence            46789999986 5699998 78999988 7753 3222     234668999999987   7899998864

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=95.87  E-value=0.03  Score=36.64  Aligned_cols=60  Identities=7%  Similarity=0.206  Sum_probs=41.6

Q ss_pred             ccceEEeCCCCeEEEeC-C-------CcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           8 SSGENRTREQALMFVAD-S-------NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd-~-------~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      +.++++||. |.+|.++ .       ..|.+.. +|.-  ..+......|++++++..++.||+++...+.|
T Consensus       136 ~~~i~~d~~-G~l~v~~~~~~~~~~~~~l~~~~-~g~~--~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I  203 (326)
T 2ghs_A          136 SNDGRMHPS-GALWIGTMGRKAETGAGSIYHVA-KGKV--TKLFADISIPNSICFSPDGTTGYFVDTKVNRL  203 (326)
T ss_dssp             EEEEEECTT-SCEEEEEEETTCCTTCEEEEEEE-TTEE--EEEEEEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred             CCCEEECCC-CCEEEEeCCCcCCCCceEEEEEe-CCcE--EEeeCCCcccCCeEEcCCCCEEEEEECCCCEE
Confidence            456778884 5677765 1       4788887 5532  22334556799999999999999999765554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=95.85  E-value=0.024  Score=36.32  Aligned_cols=62  Identities=15%  Similarity=0.183  Sum_probs=43.2

Q ss_pred             ccceEEeCCCCeEEEeC-C-------CcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           8 SSGENRTREQALMFVAD-S-------NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd-~-------~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      +.++++|| .|.+|.++ .       ..|.+...++.....+. .....|.+++++..++.||+++...+.|
T Consensus       137 ~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i  206 (333)
T 2dg1_A          137 IDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRL  206 (333)
T ss_dssp             EEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred             ccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeE
Confidence            45678888 46778776 2       46888777764444443 3455799999998888999998654433

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=95.71  E-value=0.057  Score=37.61  Aligned_cols=58  Identities=12%  Similarity=0.157  Sum_probs=44.8

Q ss_pred             ceEEeCCCCeEEEeC--CCcEEEEEcCC-----CCeEEEEe-CCCceeeEEEEcCCCCeEEEEeCCC
Q psy4903          10 GENRTREQALMFVAD--SNQILRTNMDG-----TMAMSIVS-EAAYKASGVALDINAKRLFWCDNLL   68 (73)
Q Consensus        10 g~~~dp~~g~lywtd--~~~I~ra~ldG-----s~~~~l~~-~~~~~p~~lavD~~~~~LYW~D~~~   68 (73)
                      |++.|+.+|.||+++  +..|.+-+-++     .+..++.. ..+.+|.++++|. .+.||.....+
T Consensus       279 ~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~-~g~Lwv~sn~l  344 (381)
T 3q6k_A          279 ALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDS-KGGLWFMSNGF  344 (381)
T ss_dssp             EEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECT-TSCEEEEECSC
T ss_pred             eEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECC-CCeEEEEECcc
Confidence            578899999999999  68899988887     34455554 4788999999985 44687766543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=95.63  E-value=0.081  Score=33.28  Aligned_cols=63  Identities=21%  Similarity=0.203  Sum_probs=45.9

Q ss_pred             eccceEEeCCCCeEEEeC--CCcEEEEEcC-CCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           7 FSSGENRTREQALMFVAD--SNQILRTNMD-GTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd--~~~I~ra~ld-Gs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      .+.|+++|| .|.+|.++  +..|.+.+.+ |.....+ ......|.+++++..++.||-++...+.|
T Consensus       227 ~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~l  292 (314)
T 1pjx_A          227 GADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRI-RCPFEKPSNLHFKPQTKTIFVTEHENNAV  292 (314)
T ss_dssp             EEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEE-ECSSSCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             CCCceEECC-CCCEEEEEcCCCEEEEEcCCCCcEeEEE-eCCCCCceeEEECCCCCEEEEEeCCCCeE
Confidence            467888998 56888886  5789998887 6544443 33346899999988887899888764443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=95.39  E-value=0.13  Score=32.77  Aligned_cols=59  Identities=20%  Similarity=0.263  Sum_probs=42.3

Q ss_pred             eccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCC
Q psy4903           7 FSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNL   67 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~   67 (73)
                      .+.|++++| .|.|||++  ...|.+.+.++.....+....-..|.++++|..+ +||.++..
T Consensus        46 ~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~  106 (333)
T 2dg1_A           46 QLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYLG  106 (333)
T ss_dssp             CEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEECT
T ss_pred             cccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCC-cEEEEeCC
Confidence            456788887 56799987  6789998887666555543444679999998665 57777653

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=95.28  E-value=0.16  Score=33.52  Aligned_cols=62  Identities=15%  Similarity=0.236  Sum_probs=43.8

Q ss_pred             eccceEEeCCCCeEEEeC----CCcEEEEEcC-CCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           7 FSSGENRTREQALMFVAD----SNQILRTNMD-GTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd----~~~I~ra~ld-Gs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      |+.|++++|. |.||-+.    +.+|....+. |.-...+--..-..+.|++++  +++||.+....+.+
T Consensus        22 f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v   88 (266)
T 2iwa_A           22 FTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIG   88 (266)
T ss_dssp             CEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEE
T ss_pred             CcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEE
Confidence            5679999987 7999885    4788888886 333333322233467788887  67999998876554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.26  E-value=0.098  Score=35.96  Aligned_cols=61  Identities=23%  Similarity=0.286  Sum_probs=46.5

Q ss_pred             eeeeccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCC-------ceeeEEEE---cCCCCeEEE-Ee
Q psy4903           4 KMKFSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAA-------YKASGVAL---DINAKRLFW-CD   65 (73)
Q Consensus         4 ~~~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~-------~~p~~lav---D~~~~~LYW-~D   65 (73)
                      .-+||-|...|+.+|.+|.++  +.+|.+...++.....+.-..+       ..|.||.+   |.. ++|+- +|
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~   84 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMK   84 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEE
T ss_pred             cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEc
Confidence            457899999999999999999  7999999998655444433333       26899999   666 67765 44

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=95.05  E-value=0.36  Score=30.54  Aligned_cols=64  Identities=14%  Similarity=0.183  Sum_probs=45.5

Q ss_pred             ccceEEeCCCCeEEEeC-CCcEEEEEcCCCCeEEEEeC----CCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           8 SSGENRTREQALMFVAD-SNQILRTNMDGTMAMSIVSE----AAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd-~~~I~ra~ldGs~~~~l~~~----~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      +.+++++|..+++|.++ +..|...++........+..    ....|.++++++.++.||.++...+.|
T Consensus       187 ~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v  255 (353)
T 3vgz_A          187 STGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEV  255 (353)
T ss_dssp             CCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEE
T ss_pred             cceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEE
Confidence            67889999999999988 67788766654333322322    234578899999999999988765443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=95.01  E-value=0.13  Score=33.55  Aligned_cols=58  Identities=14%  Similarity=0.168  Sum_probs=39.6

Q ss_pred             ccceEEeCCCCeEEEeC--C----------CcEEEEEcCCCCeEEEEeC-CCceeeEEEEcCCCCeEEEEeC
Q psy4903           8 SSGENRTREQALMFVAD--S----------NQILRTNMDGTMAMSIVSE-AAYKASGVALDINAKRLFWCDN   66 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd--~----------~~I~ra~ldGs~~~~l~~~-~~~~p~~lavD~~~~~LYW~D~   66 (73)
                      |.+++++| .|.+|.+.  .          ..|.+...+.......+.. .-..|.++++++.+++||.++.
T Consensus       174 p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~  244 (328)
T 3dsm_A          174 PTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN  244 (328)
T ss_dssp             BCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred             ccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence            67888888 46788877  2          4688777653222212221 1237999999999999999876

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=94.80  E-value=0.13  Score=32.96  Aligned_cols=64  Identities=9%  Similarity=0.130  Sum_probs=44.7

Q ss_pred             ccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEE---EeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           8 SSGENRTREQALMFVAD--SNQILRTNMDGTMAMSI---VSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l---~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      +.+++++|...+||.++  +..|..-.++.......   +...-..|.++++++.++.||-++...+.+
T Consensus       242 ~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v  310 (347)
T 3hfq_A          242 AAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNA  310 (347)
T ss_dssp             EEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEE
T ss_pred             ceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcE
Confidence            45688999988999887  56677766653222222   222234699999999999999998765544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=94.75  E-value=0.17  Score=34.76  Aligned_cols=63  Identities=19%  Similarity=0.187  Sum_probs=48.0

Q ss_pred             eccceEEeCCCCeEEEeC--C-CcEEEEEcCCCCeEEEEeC-----CCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           7 FSSGENRTREQALMFVAD--S-NQILRTNMDGTMAMSIVSE-----AAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd--~-~~I~ra~ldGs~~~~l~~~-----~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      .+.++++|+ .|..|-++  . +.|.|..-||+.......+     ...-|+||++++.++.|+=.+. .+++
T Consensus       138 ~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L  208 (334)
T 2p9w_A          138 GVVQSAQDR-DGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRAL  208 (334)
T ss_dssp             EEEEEEECT-TSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSE
T ss_pred             CCceeEECC-CCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeE
Confidence            467889998 58899988  7 9999999999965554422     2223779999999988888877 4443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=94.72  E-value=0.31  Score=31.69  Aligned_cols=59  Identities=14%  Similarity=0.204  Sum_probs=42.0

Q ss_pred             eccceEEeCCCCeEEEeC--CCcEEEEEcC---C-C--CeEEEEe--CCCceeeEEEEcCCCCeEEEEeC
Q psy4903           7 FSSGENRTREQALMFVAD--SNQILRTNMD---G-T--MAMSIVS--EAAYKASGVALDINAKRLFWCDN   66 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd--~~~I~ra~ld---G-s--~~~~l~~--~~~~~p~~lavD~~~~~LYW~D~   66 (73)
                      .+.|++++|..+.+|+++  ...|.+...+   | .  .+..+..  .....|.++++|..+ +||-++.
T Consensus       180 ~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~  248 (326)
T 2ghs_A          180 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARW  248 (326)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEE
T ss_pred             ccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEe
Confidence            567899999988999998  5789999886   4 2  2344432  234579999999655 5665553

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=94.53  E-value=0.5  Score=29.83  Aligned_cols=59  Identities=3%  Similarity=0.061  Sum_probs=43.3

Q ss_pred             ccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCC-C--------ceeeEEEEcCCCCeEEEEeC
Q psy4903           8 SSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEA-A--------YKASGVALDINAKRLFWCDN   66 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~-~--------~~p~~lavD~~~~~LYW~D~   66 (73)
                      +.+++++|..+++|.++  ...|.....+.......+... -        ..|.++++++.++.+|.++.
T Consensus        91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  160 (353)
T 3vgz_A           91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGI  160 (353)
T ss_dssp             CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEE
T ss_pred             cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEec
Confidence            57889999988999988  578888887654433333321 1        13899999999999999884

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=94.42  E-value=0.48  Score=29.87  Aligned_cols=60  Identities=7%  Similarity=0.015  Sum_probs=43.1

Q ss_pred             eEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903          11 ENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus        11 ~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      ...++..+.+|.++  ...|..-.++.......+......| ++++++.++.||.++...+.|
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i   64 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTL   64 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeE
Confidence            34567788999998  5888888887555555555566677 999999999999998765544

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.03  E-value=0.067  Score=35.89  Aligned_cols=63  Identities=6%  Similarity=0.046  Sum_probs=44.6

Q ss_pred             eeeccceEEeCCCCeEEEeC-CCcEEEEEcCCCCeEEE------EeCCCceeeEEEEcCC---CCeEEEEeCC
Q psy4903           5 MKFSSGENRTREQALMFVAD-SNQILRTNMDGTMAMSI------VSEAAYKASGVALDIN---AKRLFWCDNL   67 (73)
Q Consensus         5 ~~~~~g~~~dp~~g~lywtd-~~~I~ra~ldGs~~~~l------~~~~~~~p~~lavD~~---~~~LYW~D~~   67 (73)
                      +..|.+++.+|....||.++ ..+|.+..-+|...+.+      .......|.+|++++.   ++.||.++..
T Consensus        17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~   89 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSE   89 (353)
T ss_dssp             ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeC
Confidence            34678999999644399998 78899988776432221      1223456899999986   7899998753

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=93.79  E-value=0.47  Score=32.96  Aligned_cols=65  Identities=11%  Similarity=0.146  Sum_probs=45.2

Q ss_pred             ccceEEeCC----CCeEEEeC--CCcEEEEEcC----CC--CeEEEE-eCC-CceeeEEEEcCCCCeEEEEeCCCCeee
Q psy4903           8 SSGENRTRE----QALMFVAD--SNQILRTNMD----GT--MAMSIV-SEA-AYKASGVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus         8 ~~g~~~dp~----~g~lywtd--~~~I~ra~ld----Gs--~~~~l~-~~~-~~~p~~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      .-||++.|.    .+.|||..  +.++++...+    ++  ..-..+ ... .....++++|..+..||.++...+.|-
T Consensus       222 i~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~  300 (381)
T 3q6k_A          222 IFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVS  300 (381)
T ss_dssp             EEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEE
T ss_pred             ceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEE
Confidence            357889998    78999998  5678887642    22  122223 222 245678899988899999998877664

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.77  E-value=0.14  Score=35.80  Aligned_cols=56  Identities=5%  Similarity=0.227  Sum_probs=42.2

Q ss_pred             ceEEeCC---CCeEEEeC-C-------------CcEEEEEcCCC-----CeEEEEe----CCCceeeEEEEcCCCCeEEE
Q psy4903          10 GENRTRE---QALMFVAD-S-------------NQILRTNMDGT-----MAMSIVS----EAAYKASGVALDINAKRLFW   63 (73)
Q Consensus        10 g~~~dp~---~g~lywtd-~-------------~~I~ra~ldGs-----~~~~l~~----~~~~~p~~lavD~~~~~LYW   63 (73)
                      |++++|.   +|.||.++ .             .+|.|..+++.     ..++|+.    ...+.+.+|+++..+ +||.
T Consensus        81 gia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv  159 (454)
T 1cru_A           81 GFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYY  159 (454)
T ss_dssp             EEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEE
T ss_pred             EEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEE
Confidence            8999997   99999987 1             37999988652     3455553    245679999999865 7999


Q ss_pred             EeC
Q psy4903          64 CDN   66 (73)
Q Consensus        64 ~D~   66 (73)
                      +-.
T Consensus       160 ~~G  162 (454)
T 1cru_A          160 TIG  162 (454)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            854

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=93.45  E-value=0.85  Score=29.31  Aligned_cols=63  Identities=10%  Similarity=0.141  Sum_probs=44.2

Q ss_pred             cceEEeCCCCeEEEeC--CCcEEEEEcCCCCe-------------EEEEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           9 SGENRTREQALMFVAD--SNQILRTNMDGTMA-------------MSIVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         9 ~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~-------------~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      .+++++|...++|.++  ...|..-.++....             ..+....-..|.++++++.++.||-++...+.|
T Consensus       158 ~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v  235 (361)
T 3scy_A          158 HCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTV  235 (361)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEE
T ss_pred             eEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeE
Confidence            4588999888899888  56677666664321             122233445699999999999999998655544

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=93.26  E-value=0.11  Score=36.67  Aligned_cols=57  Identities=12%  Similarity=0.234  Sum_probs=43.8

Q ss_pred             cceEEeCCCCeEEEeC-------------------CCcEEEEEcCCCC-------------------eEEEEeCCCceee
Q psy4903           9 SGENRTREQALMFVAD-------------------SNQILRTNMDGTM-------------------AMSIVSEAAYKAS   50 (73)
Q Consensus         9 ~g~~~dp~~g~lywtd-------------------~~~I~ra~ldGs~-------------------~~~l~~~~~~~p~   50 (73)
                      ..|+.+| .|+||.+-                   ..+|.|.+.||+.                   +..|+...+.+|.
T Consensus       142 ~~l~fgp-DG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~  220 (463)
T 2wg3_C          142 GQLLFGP-DGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPG  220 (463)
T ss_dssp             EEEEECT-TSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCC
T ss_pred             CcEeECC-CCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcc
Confidence            3466777 67999983                   1579999999951                   4467888999999


Q ss_pred             EEEEcCCCC------eEEEEeC
Q psy4903          51 GVALDINAK------RLFWCDN   66 (73)
Q Consensus        51 ~lavD~~~~------~LYW~D~   66 (73)
                      ++++|+.+.      .+|-+|.
T Consensus       221 gla~dp~tg~~~G~l~~~~~D~  242 (463)
T 2wg3_C          221 RCAVDRHPTDININLTILCSDS  242 (463)
T ss_dssp             BEEEESSCSSTTCSEEEEEECC
T ss_pred             eEEECCCCCCcccceEEEeccc
Confidence            999998743      6776775

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=92.99  E-value=0.96  Score=28.82  Aligned_cols=64  Identities=13%  Similarity=0.088  Sum_probs=41.9

Q ss_pred             eccceEEeCCCCeEEEeC--CCcEEEEEcC--CCCeEEE-EeC---------CCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           7 FSSGENRTREQALMFVAD--SNQILRTNMD--GTMAMSI-VSE---------AAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd--~~~I~ra~ld--Gs~~~~l-~~~---------~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      -+.+++++|...+||.++  ...|..-.++  |+..... +..         ....|.++++++.++ +|-++...+.|
T Consensus        87 ~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v  164 (347)
T 3hfq_A           87 PPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKV  164 (347)
T ss_dssp             CCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEE
T ss_pred             CCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEE
Confidence            467789999999999887  4666666654  3322111 111         122477899998888 99888766554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=92.96  E-value=0.53  Score=29.66  Aligned_cols=61  Identities=11%  Similarity=0.096  Sum_probs=43.6

Q ss_pred             ccceEEeCCCCeEEEeC--CCcEEEEEcCCCCe---EEEEeCCCceeeEEEEcCCCCeEEEEeCCCC
Q psy4903           8 SSGENRTREQALMFVAD--SNQILRTNMDGTMA---MSIVSEAAYKASGVALDINAKRLFWCDNLLD   69 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~---~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~   69 (73)
                      +.+++++|..+++|.++  ..+|..-.++....   ...+.. -..|.++++++.++.||-+....+
T Consensus       178 ~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~  243 (331)
T 3u4y_A          178 PFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTV  243 (331)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEE
T ss_pred             ccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCC
Confidence            56788899888899887  57788877764332   222332 357899999999998988876433

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=92.76  E-value=1.1  Score=27.96  Aligned_cols=64  Identities=6%  Similarity=0.021  Sum_probs=44.3

Q ss_pred             ccceEEeCCCCeEEEeC-C-CcEEEEEcC--CCCeEEEEe-CCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           8 SSGENRTREQALMFVAD-S-NQILRTNMD--GTMAMSIVS-EAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd-~-~~I~ra~ld--Gs~~~~l~~-~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      +.+++++|...++|.++ . ..|..-.++  +...+.+.. ..-..|.++++++.++.||.+....+.|
T Consensus        40 ~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i  108 (343)
T 1ri6_A           40 VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNV  108 (343)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEE
T ss_pred             CceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeE
Confidence            56788999888899888 3 778776676  333222211 1223899999999999999988654433

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=91.91  E-value=0.34  Score=33.13  Aligned_cols=57  Identities=12%  Similarity=0.173  Sum_probs=41.6

Q ss_pred             cceEEeCC---CCeEEEeC----CCcEEEEEcCCC--------CeEEEEe----CCCceeeEEEEcCCCCeEEEEeC
Q psy4903           9 SGENRTRE---QALMFVAD----SNQILRTNMDGT--------MAMSIVS----EAAYKASGVALDINAKRLFWCDN   66 (73)
Q Consensus         9 ~g~~~dp~---~g~lywtd----~~~I~ra~ldGs--------~~~~l~~----~~~~~p~~lavD~~~~~LYW~D~   66 (73)
                      -|++++|.   +|.||.+.    ..+|.|..+++.        ..++|+.    ...+.+..|+++..+ .||.+-.
T Consensus        83 lGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~G  158 (347)
T 3das_A           83 LGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTG  158 (347)
T ss_dssp             EEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECB
T ss_pred             eeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEEC
Confidence            47999994   88888753    578999999872        3455554    244567889999755 7999854

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=91.79  E-value=0.9  Score=32.50  Aligned_cols=62  Identities=3%  Similarity=0.110  Sum_probs=44.4

Q ss_pred             eeccceEEeCCCCeEEEeC--CCcEEEEEcC-CCCeEEEEeCCC----------------ceeeEEEEcCCCCeEEEEeC
Q psy4903           6 KFSSGENRTREQALMFVAD--SNQILRTNMD-GTMAMSIVSEAA----------------YKASGVALDINAKRLFWCDN   66 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd--~~~I~ra~ld-Gs~~~~l~~~~~----------------~~p~~lavD~~~~~LYW~D~   66 (73)
                      ..+.++.+.|-.++||-++  +..|..-..+ ..+.+.+-...+                ..|.++++++.+++||.+..
T Consensus       321 ~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNs  400 (462)
T 2ece_A          321 PLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTNS  400 (462)
T ss_dssp             CCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEECC
T ss_pred             CceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEcC
Confidence            3578999999999999998  5777776654 322222211111                15999999999999999985


Q ss_pred             C
Q psy4903          67 L   67 (73)
Q Consensus        67 ~   67 (73)
                      .
T Consensus       401 l  401 (462)
T 2ece_A          401 L  401 (462)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=91.57  E-value=1.6  Score=27.20  Aligned_cols=64  Identities=8%  Similarity=0.155  Sum_probs=44.1

Q ss_pred             ccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeE------EEEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           8 SSGENRTREQALMFVAD--SNQILRTNMDGTMAM------SIVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~------~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      +.+++++|...++|.++  ..+|..-.++.....      .+....-..|.++++++.++.||.++...+.+
T Consensus       131 ~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i  202 (343)
T 1ri6_A          131 CHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSV  202 (343)
T ss_dssp             BCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             ceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEE
Confidence            56788899888899887  577777676642222      11222234789999999999999998655543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=91.53  E-value=1.7  Score=28.29  Aligned_cols=64  Identities=13%  Similarity=0.060  Sum_probs=43.7

Q ss_pred             eccceEEeCCCCeEEEeC--CCcEEEEEcC-CCCeEEE--Ee--CCCceeeEEEEcCCCCeEEEEeCCCCe
Q psy4903           7 FSSGENRTREQALMFVAD--SNQILRTNMD-GTMAMSI--VS--EAAYKASGVALDINAKRLFWCDNLLDY   70 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd--~~~I~ra~ld-Gs~~~~l--~~--~~~~~p~~lavD~~~~~LYW~D~~~~~   70 (73)
                      .+.+++++|...++|-++  ..+|..-.++ ......+  +.  ..-..|.++++++.++.||-+....+.
T Consensus       146 ~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~  216 (365)
T 1jof_A          146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNR  216 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             cceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCe
Confidence            456788899888888877  4788887776 2222212  11  113469999999999999988765443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=90.98  E-value=1.6  Score=27.08  Aligned_cols=58  Identities=10%  Similarity=0.102  Sum_probs=42.3

Q ss_pred             ccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCC-----CceeeEEEEcCCCCeEEEEe
Q psy4903           8 SSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEA-----AYKASGVALDINAKRLFWCD   65 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~-----~~~p~~lavD~~~~~LYW~D   65 (73)
                      +.+++++|..+.+|.+.  ..+|....++.......+...     -..|.++++++.++.||.++
T Consensus        36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  100 (337)
T 1pby_B           36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYE  100 (337)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEE
T ss_pred             ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEe
Confidence            67889999888999887  578888887654433223221     12688999999999999985

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=90.18  E-value=1.5  Score=28.16  Aligned_cols=64  Identities=13%  Similarity=0.157  Sum_probs=43.0

Q ss_pred             ccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEE--e---CCCceeeEEEEcCCCCeEEEEeCC-CCee
Q psy4903           8 SSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIV--S---EAAYKASGVALDINAKRLFWCDNL-LDYI   71 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~--~---~~~~~p~~lavD~~~~~LYW~D~~-~~~i   71 (73)
                      +.+++++|...++|-++  ..+|..-.++......+.  .   .....|.++++++.++.||-++.. .+.|
T Consensus       213 ~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i  284 (361)
T 3scy_A          213 PRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGV  284 (361)
T ss_dssp             EEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEE
T ss_pred             CeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEE
Confidence            45678899888899887  567777666532222221  1   123457899999999999988876 4443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=89.62  E-value=1.9  Score=29.80  Aligned_cols=61  Identities=13%  Similarity=0.139  Sum_probs=40.9

Q ss_pred             ccceEEeCCCCeEEEeC-CCcEEEEEcCCC---CeEEEEe---CCCc-eeeEEEEcCCC---CeEEEEeCCC
Q psy4903           8 SSGENRTREQALMFVAD-SNQILRTNMDGT---MAMSIVS---EAAY-KASGVALDINA---KRLFWCDNLL   68 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd-~~~I~ra~ldGs---~~~~l~~---~~~~-~p~~lavD~~~---~~LYW~D~~~   68 (73)
                      +-|.++||..|.||-.+ +.-|.+-..+..   ..+.+-.   ..+. .|+||+|....   ..|+-++.+-
T Consensus       182 ~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~  253 (355)
T 3amr_A          182 TEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN  253 (355)
T ss_dssp             EEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred             cceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC
Confidence            35889999999999998 566988886632   2333322   2333 79999996443   3677666543

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=87.71  E-value=2.1  Score=31.56  Aligned_cols=62  Identities=15%  Similarity=0.227  Sum_probs=42.8

Q ss_pred             eeeccceEEeCCCCeEEE-eCC-------------CcEEEEEcCCCCeEEEEe-CCCceeeEEEEcCCCCeEEEEeCC
Q psy4903           5 MKFSSGENRTREQALMFV-ADS-------------NQILRTNMDGTMAMSIVS-EAAYKASGVALDINAKRLFWCDNL   67 (73)
Q Consensus         5 ~~~~~g~~~dp~~g~lyw-td~-------------~~I~ra~ldGs~~~~l~~-~~~~~p~~lavD~~~~~LYW~D~~   67 (73)
                      +.-|.+|++|+. |.||+ ||.             ..+.+..-+......++. .....|+|+++.+.++.||-+-..
T Consensus       475 fnsPDnL~fd~~-G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQH  551 (592)
T 4a9v_A          475 FNSPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQH  551 (592)
T ss_dssp             CCCEEEEEECTT-CCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEES
T ss_pred             cCCCCceEECCC-CCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEeC
Confidence            455778999986 78888 771             167777664333333333 345689999999999999976543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=86.75  E-value=5.6  Score=27.44  Aligned_cols=63  Identities=14%  Similarity=0.172  Sum_probs=41.9

Q ss_pred             eccceEE--eCCCC--eEEEeC-CCcEEEEEc----CCCCeEEEEeC--CCceeeEEEEcCCCCeEEEEeCCCC
Q psy4903           7 FSSGENR--TREQA--LMFVAD-SNQILRTNM----DGTMAMSIVSE--AAYKASGVALDINAKRLFWCDNLLD   69 (73)
Q Consensus         7 ~~~g~~~--dp~~g--~lywtd-~~~I~ra~l----dGs~~~~l~~~--~~~~p~~lavD~~~~~LYW~D~~~~   69 (73)
                      -+-|+.+  +|..|  ++|-++ +.+++.-.+    +|.....++.+  .-.+|+|+++|....+||-++...+
T Consensus       129 ~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~G  202 (355)
T 3amr_A          129 EVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEA  202 (355)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTE
T ss_pred             CeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccce
Confidence            4567888  88877  466666 566665333    23233333332  2347999999999999999987643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=86.18  E-value=4.6  Score=26.45  Aligned_cols=61  Identities=16%  Similarity=0.115  Sum_probs=40.1

Q ss_pred             ccceEEeCCCCeEEEeC--CCcEEEEEcCCCC-eEEEEeCC------------CceeeEEEEcCCCCeEEEEeCCCCe
Q psy4903           8 SSGENRTREQALMFVAD--SNQILRTNMDGTM-AMSIVSEA------------AYKASGVALDINAKRLFWCDNLLDY   70 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~-~~~l~~~~------------~~~p~~lavD~~~~~LYW~D~~~~~   70 (73)
                      +.++...  .|.+|=+.  ...|.+.....-. ...+--..            ...|+|||+|..++++|-+...-+.
T Consensus       154 ~nele~~--dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~  229 (266)
T 2iwa_A          154 LNELEYI--NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK  229 (266)
T ss_dssp             EEEEEEE--TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred             ceeEEEE--CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCe
Confidence            4455544  57887555  5788888885333 33332112            2478999999999999988766544

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=85.57  E-value=5.3  Score=25.55  Aligned_cols=62  Identities=16%  Similarity=0.254  Sum_probs=42.5

Q ss_pred             cceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           9 SGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         9 ~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      .+++++|....+|.+.  +..|..-.+........+... ..|.++++++.+++||.+....+.|
T Consensus        35 ~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v   98 (391)
T 1l0q_A           35 MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-SSPQGVAVSPDGKQVYVTNMASSTL   98 (391)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             ceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-CCccceEECCCCCEEEEEECCCCEE
Confidence            4677888888888886  577777776543333333322 2789999999999999887654443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=84.68  E-value=5.3  Score=24.84  Aligned_cols=59  Identities=10%  Similarity=0.101  Sum_probs=41.3

Q ss_pred             ccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeC-C-----CceeeEEEEcCCCCeEEEEeC
Q psy4903           8 SSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSE-A-----AYKASGVALDINAKRLFWCDN   66 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~-~-----~~~p~~lavD~~~~~LYW~D~   66 (73)
                      +.+++++|..+.+|-+.  +.+|..-.++.......+.. .     -..|.++++++.++.||.+..
T Consensus        45 ~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  111 (349)
T 1jmx_B           45 PGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN  111 (349)
T ss_dssp             SCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             CceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcc
Confidence            56778888887888776  57888888764433323321 1     223899999999999998873

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=83.86  E-value=5.6  Score=26.23  Aligned_cols=54  Identities=24%  Similarity=0.318  Sum_probs=33.8

Q ss_pred             eCCCCeEEEeC--CCcEEEEEcC-CCCeEEEEeCC-----------CceeeEEEEcCCCCeEEEEeCC
Q psy4903          14 TREQALMFVAD--SNQILRTNMD-GTMAMSIVSEA-----------AYKASGVALDINAKRLFWCDNL   67 (73)
Q Consensus        14 dp~~g~lywtd--~~~I~ra~ld-Gs~~~~l~~~~-----------~~~p~~lavD~~~~~LYW~D~~   67 (73)
                      ....|.||=..  ...|.+.+.. |.-...+--..           ..-|+|||.|+.+++||-+-..
T Consensus       178 e~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          178 EWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             EEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            34467777444  4677776654 32233332221           2468999999999999977654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=83.68  E-value=7  Score=25.40  Aligned_cols=61  Identities=11%  Similarity=0.130  Sum_probs=38.6

Q ss_pred             eccceEEeCCCCeEEEeC----CCcEEEEEcCC-CCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           7 FSSGENRTREQALMFVAD----SNQILRTNMDG-TMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd----~~~I~ra~ldG-s~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      |--||.+++  +.||-+.    +++|.+..++. .-...+--..-..+.|++++  +++||-.+...+.+
T Consensus        22 ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v   87 (243)
T 3mbr_X           22 FTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEG   87 (243)
T ss_dssp             CEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEE
T ss_pred             ccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEE
Confidence            345888887  7899886    36888888863 32232222223345777776  68888887665443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=82.44  E-value=8.7  Score=25.63  Aligned_cols=58  Identities=9%  Similarity=-0.131  Sum_probs=37.7

Q ss_pred             ceEEeCCCCeEEEeC--C---------CcEEEEEcCC-CCeEEEEeC------CCceeeEEEEcCCCCeEEEEeCC
Q psy4903          10 GENRTREQALMFVAD--S---------NQILRTNMDG-TMAMSIVSE------AAYKASGVALDINAKRLFWCDNL   67 (73)
Q Consensus        10 g~~~dp~~g~lywtd--~---------~~I~ra~ldG-s~~~~l~~~------~~~~p~~lavD~~~~~LYW~D~~   67 (73)
                      |++++|..+++|-++  .         ..|.....+. .....+-..      .-..|.++++++.+++||-+...
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~  145 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA  145 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC
Confidence            899999999999986  1         2355544431 111111110      02468999999999999998754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=81.93  E-value=6.9  Score=24.11  Aligned_cols=58  Identities=5%  Similarity=0.038  Sum_probs=41.1

Q ss_pred             eccceEEeCCCCeEEEeC-------------CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEe
Q psy4903           7 FSSGENRTREQALMFVAD-------------SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD   65 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd-------------~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D   65 (73)
                      -+.+++++|..+++|.++             ...|....+++......+.. -..|.++++++.++.||.++
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~  153 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLG  153 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEES
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEeC
Confidence            466788999888999884             36777777765433333332 34688999998888888874

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=81.75  E-value=5.6  Score=25.77  Aligned_cols=64  Identities=9%  Similarity=0.093  Sum_probs=41.4

Q ss_pred             ccceE-EeCCCCeEEEeC--CC-----cEEEEEcCCCCeEE----EEeCCCceeeEEEEcC---CCCeEEEEeCCCCee
Q psy4903           8 SSGEN-RTREQALMFVAD--SN-----QILRTNMDGTMAMS----IVSEAAYKASGVALDI---NAKRLFWCDNLLDYI   71 (73)
Q Consensus         8 ~~g~~-~dp~~g~lywtd--~~-----~I~ra~ldGs~~~~----l~~~~~~~p~~lavD~---~~~~LYW~D~~~~~i   71 (73)
                      +.+++ ++|...+||-++  ..     +|..-.++.+....    .+...-..|.++++++   .++.||-++...+.|
T Consensus       256 ~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v  334 (365)
T 1jof_A          256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWL  334 (365)
T ss_dssp             EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEE
T ss_pred             cccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeE
Confidence            55788 899888898776  23     67776664222222    2222334688899988   588899887654444

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=81.06  E-value=8.8  Score=24.91  Aligned_cols=53  Identities=19%  Similarity=0.237  Sum_probs=33.3

Q ss_pred             CCCCeEEEeC--CCcEEEEEcC-CCCeEEEEeC------------CCceeeEEEEcCCCCeEEEEeCC
Q psy4903          15 REQALMFVAD--SNQILRTNMD-GTMAMSIVSE------------AAYKASGVALDINAKRLFWCDNL   67 (73)
Q Consensus        15 p~~g~lywtd--~~~I~ra~ld-Gs~~~~l~~~------------~~~~p~~lavD~~~~~LYW~D~~   67 (73)
                      +..|.+|=..  ...|.+.+.. |.-...+--.            ...-|+|||.|+.+++||-+-..
T Consensus       157 ~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          157 WVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             EETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             EeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            4578877333  4667776654 3222333211            23468999999999999977654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=80.18  E-value=9.2  Score=24.40  Aligned_cols=62  Identities=16%  Similarity=0.246  Sum_probs=43.8

Q ss_pred             cceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           9 SGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         9 ~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      .+++++|...++|.+.  ...|..-.++.......+. .-..|.++++++.++.||.+....+.|
T Consensus        77 ~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v  140 (391)
T 1l0q_A           77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTV  140 (391)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             cceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEE
Confidence            4677888888888886  4778887777544443343 334689999998888898887654443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=80.06  E-value=12  Score=26.82  Aligned_cols=61  Identities=7%  Similarity=-0.037  Sum_probs=41.8

Q ss_pred             cceEEeCCCCeEEEeC-CCcEEEEEcC-CCCeEEE-EeCCCceeeEEEEc----CCCCeEEEEeCCCCe
Q psy4903           9 SGENRTREQALMFVAD-SNQILRTNMD-GTMAMSI-VSEAAYKASGVALD----INAKRLFWCDNLLDY   70 (73)
Q Consensus         9 ~g~~~dp~~g~lywtd-~~~I~ra~ld-Gs~~~~l-~~~~~~~p~~lavD----~~~~~LYW~D~~~~~   70 (73)
                      .|++++|..+++|-++ ...|....+. ++.+.+- +..+ ..|.+++++    +.++.+|-+....+.
T Consensus       200 ~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~  267 (567)
T 1qks_A          200 HISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQ  267 (567)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTE
T ss_pred             cceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCe
Confidence            4788899888899777 5778888884 3332211 2222 369999999    588899887765443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=80.01  E-value=10  Score=24.97  Aligned_cols=60  Identities=12%  Similarity=0.151  Sum_probs=36.7

Q ss_pred             eccceEEeCCCCeEEEeC----CCcEEEEEcC-CCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCe
Q psy4903           7 FSSGENRTREQALMFVAD----SNQILRTNMD-GTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDY   70 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd----~~~I~ra~ld-Gs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~   70 (73)
                      |-.||.++  .+.||-+.    +++|.+..++ |.-...+--..-..+.|++++  +++||-++...+.
T Consensus        44 ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~  108 (262)
T 3nol_A           44 FTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGL  108 (262)
T ss_dssp             EEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSE
T ss_pred             ccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCE
Confidence            34688887  47888886    2477777776 333333322222245778876  6788888765544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	73
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	2e-04
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	0.003
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	0.004

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 2e-04
 Identities = 8/54 (14%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 18 ALMFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI 71
          A +F  + +++ +  +D +   S++         +  ++ + R++W D     I
Sbjct: 2  AYLFFTNRHEVRKMTLDRSEYTSLIPNLRN-VVALDTEVASNRIYWSDLSQRMI 54

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.2 bits (72), Expect = 0.003
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 19 LMFVADSNQILRTNMDG-----TMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI 71
          L+F A + +I R  ++      T A + +   A    G+A D   K ++W D     I
Sbjct: 4  LLF-AQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSI 60

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 31.4 bits (70), Expect = 0.004
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 20  MFVADSN----QILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
           ++  D N    +I  ++MDGT    +  +     +G+  D  + +L W D      E
Sbjct: 136 LYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE 192

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	73
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.75
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.72
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.6
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.5
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.46
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.41
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.93
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.91
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.09
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.08
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.07
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.04
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	96.67
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	96.31
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.18
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.71
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	95.38
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	95.31
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.06
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	94.28
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.14
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	92.83
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	91.17
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	90.65
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	90.03
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	88.09
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	84.9
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	84.49

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.4e-18  Score=111.52  Aligned_cols=68  Identities=24%  Similarity=0.411  Sum_probs=63.4

Q ss_pred             eeccceEEeCCCCeEEEeC---CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeeeC
Q psy4903           6 KFSSGENRTREQALMFVAD---SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET   73 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd---~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie~   73 (73)
                      ..|.|+++||..|+|||++   .++|+|++|||+++++++..++..|+||++|..+++|||+|...+.|++
T Consensus       120 ~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~  190 (266)
T d1ijqa1         120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS  190 (266)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEE
Confidence            3578999999999999998   4789999999999999999999999999999999999999999999874

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1.1e-17  Score=109.19  Aligned_cols=68  Identities=19%  Similarity=0.255  Sum_probs=62.7

Q ss_pred             eeccceEEeCCCCeEEEeC----CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeeeC
Q psy4903           6 KFSSGENRTREQALMFVAD----SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET   73 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd----~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie~   73 (73)
                      ..|.|+++||.+|+|||++    .++|+|+.|||+++++++..++..|.|||+|..+++|||+|...+.|++
T Consensus       122 ~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~  193 (263)
T d1npea_         122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC  193 (263)
T ss_dssp             SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEE
Confidence            4578999999999999998    3679999999999999999999999999999999999999999988863

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=3.4e-15  Score=97.15  Aligned_cols=66  Identities=26%  Similarity=0.415  Sum_probs=61.2

Q ss_pred             eccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeee
Q psy4903           7 FSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      ...|+++|+.+++|||+|  +.+|.++.+||+..++++..++..|.+|||||.+++|||+|...+.|+
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~  104 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIE  104 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEE
Confidence            356899999999999999  689999999999999999989999999999999999999999888775

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.8e-14  Score=91.54  Aligned_cols=65  Identities=17%  Similarity=0.331  Sum_probs=55.4

Q ss_pred             ccceEEeCCCCeEEEeC--CCcEEEEEcCCC----CeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeee
Q psy4903           8 SSGENRTREQALMFVAD--SNQILRTNMDGT----MAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd--~~~I~ra~ldGs----~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      +.|+.+|+.+++|||+|  ...|.|+.+||+    ..++++..++..|.||||||.+++|||+|...++|+
T Consensus        32 ~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~  102 (266)
T d1ijqa1          32 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS  102 (266)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             eEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEE
Confidence            45788999999999999  688999999985    466778888999999999999999999999988876

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.46  E-value=2.7e-07  Score=57.91  Aligned_cols=66  Identities=11%  Similarity=0.211  Sum_probs=55.7

Q ss_pred             eeeccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeee
Q psy4903           5 MKFSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus         5 ~~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      +..|.|++++| .|.+|+++  +.+|.+...+|..+..+....+..|.||++|.. .+||++|...++|.
T Consensus       139 ~~~p~~i~~~~-~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~-g~l~vsd~~~~~i~  206 (260)
T d1rwia_         139 LNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA-GTVYVTEHNTNQVV  206 (260)
T ss_dssp             CCSCCEEEECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTT-CCEEEEETTTTEEE
T ss_pred             cCCcceeeecC-CCCEeeeccccccccccccccceeeeeeccccCCCccceeeee-eeeeeeecCCCEEE
Confidence            34678999998 66799998  689999999998888777778899999999975 57999999877653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.41  E-value=2.7e-07  Score=57.95  Aligned_cols=64  Identities=16%  Similarity=0.212  Sum_probs=54.1

Q ss_pred             eeccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           6 KFSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      ..|.|+++||. |.||++|  +.+|.+...+|.....+....+..|.+|++|.. .+||++|...++|
T Consensus       182 ~~p~gi~~d~~-g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~-g~l~vad~~~~rI  247 (260)
T d1rwia_         182 TAPWGIAVDEA-GTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSD-RTVYVADRGNDRV  247 (260)
T ss_dssp             CSEEEEEECTT-CCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTT-CCEEEEEGGGTEE
T ss_pred             CCCccceeeee-eeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCC-CCEEEEECCCCEE
Confidence            45788999985 7899999  688999998888877776778889999999965 5799999987776

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.93  E-value=2.5e-05  Score=50.28  Aligned_cols=66  Identities=9%  Similarity=0.188  Sum_probs=49.9

Q ss_pred             eeeccceEEeCCCCeEEEeC--CCcEEEEEcCCCC--eEE------EEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           5 MKFSSGENRTREQALMFVAD--SNQILRTNMDGTM--AMS------IVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         5 ~~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~--~~~------l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      +..|.|++++|..+.||++|  +.+|.+..+++..  ...      ........|.||++|..+ +||.++...++|
T Consensus       176 ~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G-~l~Va~~~~g~V  251 (319)
T d2dg1a1         176 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDD-NLYVAMYGQGRV  251 (319)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTC-CEEEEEETTTEE
T ss_pred             cceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCC-CEEEEEcCCCEE
Confidence            45789999999999999999  6899999886432  111      112345679999999654 699999877765

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.91  E-value=1.3e-05  Score=51.66  Aligned_cols=62  Identities=15%  Similarity=0.173  Sum_probs=49.2

Q ss_pred             ccceEEeCCCCeEEEeC--------CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           8 SSGENRTREQALMFVAD--------SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd--------~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      +.++++|| .|.+|++|        ...+.+...||...+.+. ..+..|+||+++..++.||++|...++|
T Consensus       132 ~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~-~~~~~pnGia~s~dg~~lyvad~~~~~I  201 (319)
T d2dg1a1         132 IDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRL  201 (319)
T ss_dssp             EEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred             CcceeEEe-ccceeecccccccccCcceeEEEecccceeEEEe-eccceeeeeeeccccceEEEecccCCce
Confidence            45677887 56799997        145999998987766555 4677899999999999999999887766

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.09  E-value=0.001  Score=41.72  Aligned_cols=59  Identities=22%  Similarity=0.257  Sum_probs=44.6

Q ss_pred             eccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCC
Q psy4903           7 FSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLD   69 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~   69 (73)
                      ++.|++++|. |.||.++  +.+|.|..-+|... . +......|.+++++..+ +||-++...+
T Consensus        29 ~~e~iAv~pd-G~l~vt~~~~~~I~~i~p~g~~~-~-~~~~~~~~~gla~~~dG-~l~v~~~~~~   89 (302)
T d2p4oa1          29 FLENLASAPD-GTIFVTNHEVGEIVSITPDGNQQ-I-HATVEGKVSGLAFTSNG-DLVATGWNAD   89 (302)
T ss_dssp             CEEEEEECTT-SCEEEEETTTTEEEEECTTCCEE-E-EEECSSEEEEEEECTTS-CEEEEEECTT
T ss_pred             CcCCEEECCC-CCEEEEeCCCCEEEEEeCCCCEE-E-EEcCCCCcceEEEcCCC-CeEEEecCCc
Confidence            5668999985 7899999  79999999888633 3 33445689999999765 5887765544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.08  E-value=0.001  Score=42.48  Aligned_cols=61  Identities=20%  Similarity=0.253  Sum_probs=46.3

Q ss_pred             eccceEEeCCCCeEEEeC---------CCcEEEEEcCCCCeEEEEeC----CCceeeEEEEcCCCCeEEEEeCCC
Q psy4903           7 FSSGENRTREQALMFVAD---------SNQILRTNMDGTMAMSIVSE----AAYKASGVALDINAKRLFWCDNLL   68 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd---------~~~I~ra~ldGs~~~~l~~~----~~~~p~~lavD~~~~~LYW~D~~~   68 (73)
                      .+.|.++|| .|.+|+++         +.+|.|...++.....+...    ....|.||++|..+++||-+|...
T Consensus        19 g~EGpa~d~-dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~   92 (314)
T d1pjxa_          19 GAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL   92 (314)
T ss_dssp             TCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT
T ss_pred             CCeEeEEeC-CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCC
Confidence            567899998 57788876         35799998887766655432    223599999999998999888753

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.07  E-value=0.0022  Score=40.50  Aligned_cols=66  Identities=11%  Similarity=0.137  Sum_probs=48.7

Q ss_pred             eeeccceEEeCCCCeEEEeC--CCcEEEEEcCCCC------eEEEEe--CCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           5 MKFSSGENRTREQALMFVAD--SNQILRTNMDGTM------AMSIVS--EAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         5 ~~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~------~~~l~~--~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      +.++.|++.+|..+.+||+|  ..+|.+..+|+..      +...+.  .....|.|+++|..+ +||-+....++|
T Consensus       147 ~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~G-nlWva~~~~g~V  222 (295)
T d2ghsa1         147 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAV  222 (295)
T ss_dssp             ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEE
T ss_pred             cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCC-CEEeeeeCCCce
Confidence            55789999999999999999  6899999998542      333332  245679999999654 677666555544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.04  E-value=0.00088  Score=41.66  Aligned_cols=62  Identities=18%  Similarity=0.191  Sum_probs=46.5

Q ss_pred             eeeeccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEe-----CCCceeeEEEEcCCCCeEEEEeC
Q psy4903           4 KMKFSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVS-----EAAYKASGVALDINAKRLFWCDN   66 (73)
Q Consensus         4 ~~~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~-----~~~~~p~~lavD~~~~~LYW~D~   66 (73)
                      ++..|.|+++|| .|.||.+|  +.+|.+-+.+|.-...+-.     .....|.+++++......+++..
T Consensus        21 ~f~~P~gvavd~-dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~   89 (279)
T d1q7fa_          21 QFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTER   89 (279)
T ss_dssp             CBSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEEC
T ss_pred             eECCccEEEEcC-CCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceecc
Confidence            356799999998 67899999  7899998888865444322     14457999998877777777654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=96.67  E-value=0.004  Score=39.60  Aligned_cols=65  Identities=17%  Similarity=0.137  Sum_probs=50.7

Q ss_pred             eccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCeee
Q psy4903           7 FSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE   72 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~ie   72 (73)
                      .|.|+++|+. |.||-++  ..+|.+-.-+|......+......|.++++....+.||-++...++|.
T Consensus       227 ~pdGiavD~~-GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~  293 (314)
T d1pjxa_         227 GADGMDFDED-NNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVW  293 (314)
T ss_dssp             EEEEEEEBTT-CCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             cceeeEEecC-CcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEE
Confidence            4679999965 7788887  688999887876555545555578999999887778999998877764

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.31  E-value=0.0099  Score=36.64  Aligned_cols=64  Identities=16%  Similarity=0.202  Sum_probs=50.1

Q ss_pred             eccceEEeCCCCeEEEeC---CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           7 FSSGENRTREQALMFVAD---SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd---~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      .|.|+++++..+..+++.   +.+|.+...+|.....+-...+..|.++++|.. .++|.+|....++
T Consensus        71 ~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~-G~i~v~~~~~~~~  137 (279)
T d1q7fa_          71 YPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNK-GRIIVVECKVMRV  137 (279)
T ss_dssp             SEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTT-SCEEEEETTTTEE
T ss_pred             ccccccccccccccceeccCCccccccccccccceeecCCCcccccceeccccC-CcEEEEeecccee
Confidence            466778888888888775   578999999998777766667889999999954 4788888776554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.18  E-value=0.017  Score=36.23  Aligned_cols=50  Identities=6%  Similarity=0.041  Sum_probs=37.1

Q ss_pred             eeccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCC
Q psy4903           6 KFSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDIN   57 (73)
Q Consensus         6 ~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~   57 (73)
                      .+.-|-+-|+..|.|||+|  +++|.|...++...++...  -..|.+++.+..
T Consensus        18 ~LgEgp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~--~~~~~~i~~~~d   69 (295)
T d2ghsa1          18 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHAL--PFMGSALAKISD   69 (295)
T ss_dssp             SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC--SSCEEEEEEEET
T ss_pred             eeeeCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEEC--CCCcEEEEEecC
Confidence            4556777799999999999  7999999988765554332  236788888644

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.71  E-value=0.011  Score=39.60  Aligned_cols=42  Identities=21%  Similarity=0.362  Sum_probs=35.1

Q ss_pred             CcEEEEEcCCCCe----------EEEEeCCCceeeEEEEcCCCCeEEEEeCCC
Q psy4903          26 NQILRTNMDGTMA----------MSIVSEAAYKASGVALDINAKRLFWCDNLL   68 (73)
Q Consensus        26 ~~I~ra~ldGs~~----------~~l~~~~~~~p~~lavD~~~~~LYW~D~~~   68 (73)
                      .+|.|...||+..          ..+...++.+|.++++|. +.+||.+|.+.
T Consensus       197 Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p-~g~l~~~e~G~  248 (450)
T d1crua_         197 GKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTP-NGKLLQSEQGP  248 (450)
T ss_dssp             SEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECT-TSCEEEEEECS
T ss_pred             CceEEeeccccccccccccccccceEEEeccccccceeecc-cceeeeccccc
Confidence            6899999998742          356788999999999998 67899999864

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=95.38  E-value=0.088  Score=31.36  Aligned_cols=63  Identities=10%  Similarity=0.068  Sum_probs=45.5

Q ss_pred             ccceEEeCCCCeEEEeC--CCcEEEEEcCCCC-eEEEE--eCCCceeeEEEEcCCCCeEEEEeCCCCe
Q psy4903           8 SSGENRTREQALMFVAD--SNQILRTNMDGTM-AMSIV--SEAAYKASGVALDINAKRLFWCDNLLDY   70 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~-~~~l~--~~~~~~p~~lavD~~~~~LYW~D~~~~~   70 (73)
                      +.++++.|...+||-+.  ...|..-.++... ...+.  ......|.++++++.++.||.++.....
T Consensus        39 v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~  106 (333)
T d1ri6a_          39 VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGN  106 (333)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTE
T ss_pred             EeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCc
Confidence            47899999988998877  4677766676433 22232  2244569999999999999999875544

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=95.31  E-value=0.074  Score=32.78  Aligned_cols=62  Identities=13%  Similarity=0.091  Sum_probs=45.6

Q ss_pred             eccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeC----------CCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           7 FSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSE----------AAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~----------~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      ++.|++++|. |.+|.++  +.+|.+...++.........          ....|+||+.|  .+.+|+++...++|
T Consensus       114 ~~n~i~~~~~-g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i  187 (302)
T d2p4oa1         114 FLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLL  187 (302)
T ss_dssp             CEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEE
T ss_pred             ccceeEEccC-CCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecCCCCeE
Confidence            4567888875 6778887  68899988887654444332          45568899887  67899999987765

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.06  E-value=0.039  Score=35.69  Aligned_cols=57  Identities=12%  Similarity=0.251  Sum_probs=43.3

Q ss_pred             eeeccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEe--CCCceeeEEEEcCCCCeE
Q psy4903           5 MKFSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVS--EAAYKASGVALDINAKRL   61 (73)
Q Consensus         5 ~~~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~--~~~~~p~~lavD~~~~~L   61 (73)
                      ..+|.|++++|..+.||.++  ..+|.+-.+++.+......  .--..|..|.+|.....+
T Consensus       205 l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~l  265 (340)
T d1v04a_         205 FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDL  265 (340)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCE
T ss_pred             CCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEE
Confidence            46899999999999999999  6889998888765433322  234469999999765554

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=94.28  E-value=0.2  Score=31.80  Aligned_cols=65  Identities=14%  Similarity=0.100  Sum_probs=49.0

Q ss_pred             eccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeC-----CCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           7 FSSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSE-----AAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         7 ~~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~-----~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      ++.+++++|..+++|-+|  ..+|.....+..........     .-..|.++++++.++.+|-+....++|
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V  217 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRI  217 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEE
Confidence            355889999999999998  57788877775544333321     235799999999999999998877665

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.14  E-value=0.19  Score=32.25  Aligned_cols=45  Identities=16%  Similarity=0.133  Sum_probs=34.7

Q ss_pred             CcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903          26 NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus        26 ~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      +.-.....|+...+++ .+++..|+||++++.++.||.++...++|
T Consensus       186 ~~g~v~~~~~~~~~~~-~~~l~~pNGI~~s~d~~~lyVa~t~~~~i  230 (340)
T d1v04a_         186 AWSFVTYYSPNDVRVV-AEGFDFANGINISPDGKYVYIAELLAHKI  230 (340)
T ss_dssp             CCEEEEEECSSCEEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred             CceeEEEEcCCceEEE-cCCCCccceeEECCCCCEEEEEeCCCCeE
Confidence            3445566677666554 45788999999999999999999887765

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=92.83  E-value=0.45  Score=27.52  Aligned_cols=63  Identities=13%  Similarity=0.217  Sum_probs=41.9

Q ss_pred             ccceEEeCCCCeEEEeC----CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           8 SSGENRTREQALMFVAD----SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd----~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      +.+++++|....+|.+.    ..+|..-..........+. .-..|.++++++.+++||.+....+.|
T Consensus       202 ~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~va~spdg~~l~va~~~~~~i  268 (301)
T d1l0qa2         202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP-VGPDPAGIAVTPDGKKVYVALSFCNTV  268 (301)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             cceeeccccccccccccccceeeeeeeeecCCCeEEEEEc-CCCCEEEEEEeCCCCEEEEEECCCCeE
Confidence            45778888888888765    2456665543222222222 234799999999999999998776654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=91.17  E-value=0.37  Score=28.43  Aligned_cols=64  Identities=13%  Similarity=0.155  Sum_probs=44.1

Q ss_pred             ccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeE--EEEeCCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903           8 SSGENRTREQALMFVAD--SNQILRTNMDGTMAM--SIVSEAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~--~l~~~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      +.+++++|...+||.++  ...|..-..+.....  .-.......|.++++++.++.+|.++.....|
T Consensus        85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i  152 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRI  152 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEE
T ss_pred             ceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeecccccccee
Confidence            56788899888898886  455554444443322  22334556789999999999999998766554

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=90.65  E-value=0.67  Score=27.14  Aligned_cols=60  Identities=10%  Similarity=0.147  Sum_probs=41.7

Q ss_pred             ceEEeCCCCeEEEeC-CCcEEEEEcCCCCeEEEE--e-CCCceeeEEEEcCCCCeEEEEeCCCCee
Q psy4903          10 GENRTREQALMFVAD-SNQILRTNMDGTMAMSIV--S-EAAYKASGVALDINAKRLFWCDNLLDYI   71 (73)
Q Consensus        10 g~~~dp~~g~lywtd-~~~I~ra~ldGs~~~~l~--~-~~~~~p~~lavD~~~~~LYW~D~~~~~i   71 (73)
                      |+++.|-..+|+-.. ..+|.--.++- . +.+-  . ..-..|.++++.+.++.+|.+....+.|
T Consensus         1 g~a~~~~~~~l~~~~~~~~v~v~D~~t-~-~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v   64 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYPNNLHVVDVAS-D-TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDI   64 (346)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTT-T-EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEE
T ss_pred             CccCCCCCcEEEEEcCCCEEEEEECCC-C-CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcE
Confidence            667777777777666 67777777752 2 2221  1 2334699999999999999998776655

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=90.03  E-value=0.97  Score=25.96  Aligned_cols=59  Identities=19%  Similarity=0.287  Sum_probs=41.9

Q ss_pred             ccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeCCCceeeEEEEcCCCCeEEEEeCC
Q psy4903           8 SSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNL   67 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~~~~~p~~lavD~~~~~LYW~D~~   67 (73)
                      |.|++++|..++||-++  +.+|..-++........+. ....|.+++++..++.+|-+...
T Consensus        34 p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   94 (301)
T d1l0qa2          34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP-AGSSPQGVAVSPDGKQVYVTNMA   94 (301)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETT
T ss_pred             ceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee-ccccccccccccccccccccccc
Confidence            56799999999999887  5788887776433332233 33478999998888877766544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=88.09  E-value=1.1  Score=28.14  Aligned_cols=60  Identities=17%  Similarity=0.211  Sum_probs=42.9

Q ss_pred             ccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEe-------------------CCCceeeEEEEcCCCCeEEEEeC
Q psy4903           8 SSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVS-------------------EAAYKASGVALDINAKRLFWCDN   66 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~-------------------~~~~~p~~lavD~~~~~LYW~D~   66 (73)
                      |++++.+|...++|-+.  ..+|..-.+|+.....+..                   .....|..|++++.++.||-+..
T Consensus       195 Pr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr  274 (365)
T d1jofa_         195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             eEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcc
Confidence            56789999988999887  6888877777543222211                   12235789999999999999865


Q ss_pred             C
Q psy4903          67 L   67 (73)
Q Consensus        67 ~   67 (73)
                      .
T Consensus       275 ~  275 (365)
T d1jofa_         275 A  275 (365)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=84.90  E-value=2.3  Score=24.63  Aligned_cols=59  Identities=10%  Similarity=0.095  Sum_probs=40.6

Q ss_pred             ccceEEeCCCCeEEEeC--CCcEEEEEcCCCCeEEEEeC------CCceeeEEEEcCCCCeEEEEeC
Q psy4903           8 SSGENRTREQALMFVAD--SNQILRTNMDGTMAMSIVSE------AAYKASGVALDINAKRLFWCDN   66 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd--~~~I~ra~ldGs~~~~l~~~------~~~~p~~lavD~~~~~LYW~D~   66 (73)
                      +.++++.|...++|.+.  +..|..-.++.......+..      ....|.++++.+.++.+|-+..
T Consensus        42 p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          42 PGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             SCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             cceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEec
Confidence            56889999888999887  57787776653322222221      1235889999999999987753

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=84.49  E-value=1.9  Score=27.98  Aligned_cols=48  Identities=15%  Similarity=0.282  Sum_probs=35.4

Q ss_pred             ccceEEeCCCCeEEEeC-CCcEEEEEcC---CCCeEEEEeC----CCceeeEEEEc
Q psy4903           8 SSGENRTREQALMFVAD-SNQILRTNMD---GTMAMSIVSE----AAYKASGVALD   55 (73)
Q Consensus         8 ~~g~~~dp~~g~lywtd-~~~I~ra~ld---Gs~~~~l~~~----~~~~p~~lavD   55 (73)
                      +.|.|+|+.++.||-++ +..|.+-..+   +.....+...    -..-|+||||=
T Consensus       182 ~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy  237 (353)
T d1h6la_         182 TEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIY  237 (353)
T ss_dssp             EEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEE
T ss_pred             cceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEE
Confidence            56999999999999998 7778877766   3345544432    34569999984