Psyllid ID: psy4906

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
Protein Sequence
MYRTYPGRQGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIASAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTWLVTSIDALNIQVSSVA
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
myrtypgrqgeiDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIASAEIKDKSTLLDYRKLIETQMERFKVVERETKTkayskeglgavqkmdpaqkeKEEISTWLVTSIDALNIQVSSVA
Flexible Loop (DISEMBL)
myrtypgrqgeidrcLKKVSEGVETFEDIWQKvhnatnsnqkekYEADLKKEIKKLQRLRDQIKSwiasaeikdkstllDYRKLIETQMerfkvveretktkayskeglgavqkmdpaqkEKEEISTWLVTSIDALniqvssva
Low Complexity Region (SEG)
MYRTYPGRQGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIASAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTWLVTSIDALNIQVSSVA
Disordered region (IsUnstruct)
*************RCLKKVSEGVETFEDIWQKVH*********************LQRLRDQIKSWIASAEIKDKSTLLDYRKLIETQMERFKVV*****************************ISTWLVTSIDALNI******
Disordered Region (DISOPRED)
****YPGRQGEIDRCLKKVSEGVETFEDIWQ******************KKEIKKLQRLRDQIK*************LLDYRKLIETQMERF********************************ISTWLVTSIDALNIQVS***
Disordered Region (DISEMBL)
********QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIASAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAV************ISTWLVTSIDALNIQVSSVA
Disordered Region (DISPRO)
*YRTYPGRQGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIASAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTWLVTSIDALNIQVSSVA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYRTYPGRQGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQxxxxxxxxxxxxxxxxxxxxxxxxxxxxAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTWLVTSIDALNIQVSSVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	144	2.2.26 [Sep-21-2011]
O75175	753	CCR4-NOT transcription co	yes	N/A	0.916	0.175	0.833	4e-61
Q8K0V4	751	CCR4-NOT transcription co	yes	N/A	0.916	0.175	0.825	1e-60
O13870	640	General negative regulato	yes	N/A	0.916	0.206	0.5	4e-32
P06102	836	General negative regulato	yes	N/A	0.937	0.161	0.477	4e-30
Q12514	560	General negative regulato	no	N/A	0.916	0.235	0.463	1e-24

>sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1

 Score =  232 bits (592), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 110/132 (83%), Positives = 119/132 (90%)

Query: 9   QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
           QGEIDRCLKKVSEGVE FEDIWQK+HNA N+NQKEKYEADLKKEIKKLQRLRDQIK+W+A
Sbjct: 8   QGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVA 67

Query: 69  SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
           S EIKDK  L+D RKLIETQMERFKVVERETKTKAYSKEGLG  QK+DPAQKEKEE+  W
Sbjct: 68  SNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQW 127

Query: 129 LVTSIDALNIQV 140
           L  +ID LN+QV
Sbjct: 128 LTNTIDTLNMQV 139

The CCR4-NOT complex functions as general transcription regulation complex.
Homo sapiens (taxid: 9606)

>sp|Q8K0V4|CNOT3_MOUSE CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1

 Score =  231 bits (588), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/132 (82%), Positives = 119/132 (90%)

Query: 9   QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
           QGEIDRCLKKVSEGVE FEDIWQK+HNA N+NQKEKYEADLKKEIKKLQRLRDQIK+W+A
Sbjct: 8   QGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVA 67

Query: 69  SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
           S EIKDK  L++ RKLIETQMERFKVVERETKTKAYSKEGLG  QK+DPAQKEKEE+  W
Sbjct: 68  SNEIKDKRQLIENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQW 127

Query: 129 LVTSIDALNIQV 140
           L  +ID LN+QV
Sbjct: 128 LTNTIDTLNMQV 139

The CCR4-NOT complex functions as general transcription regulation complex.

Mus musculus (taxid: 10090)

>sp|O13870|NOT3_SCHPO General negative regulator of transcription subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not3 PE=1 SV=2

 Score =  136 bits (343), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 96/132 (72%)

Query: 9   QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
           Q EI++  KKV++G+  F+++++K+  + + +QKEK E DLK +IKKLQRLRDQIK+W +
Sbjct: 7   QVEIEKTFKKVTDGIAIFDEVYEKLSASNSVSQKEKLEGDLKTQIKKLQRLRDQIKTWAS 66

Query: 69  SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
           S +IKDK  LL+ R+LIE +ME FK VERE K KA+SKEGL    K+DP +KEK++   W
Sbjct: 67  SNDIKDKKALLENRRLIEAKMEEFKAVEREMKIKAFSKEGLSIASKLDPKEKEKQDTIQW 126

Query: 129 LVTSIDALNIQV 140
           +  +++ L  Q 
Sbjct: 127 ISNAVEELERQA 138

Acts as component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. The NOT protein subcomplex negatively regulates the basal and activated transcription of many genes. Preferentially affects TC-type TATA element-dependent transcription. Could directly or indirectly inhibit component(s) of the general transcription machinery.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P06102|NOT3_YEAST General negative regulator of transcription subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOT3 PE=1 SV=2

 Score =  130 bits (326), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 97/136 (71%), Gaps = 1/136 (0%)

Query: 9   QGEIDRCLKKVSEGVETFEDIWQKVHNATNS-NQKEKYEADLKKEIKKLQRLRDQIKSWI 67
           Q E+DR  KK++EG+E F   +++  + TN+ +QK+K E+DLK+E+KKLQRLR+QIKSW 
Sbjct: 7   QQEVDRVFKKINEGLEIFNSYYERHESCTNNPSQKDKLESDLKREVKKLQRLREQIKSWQ 66

Query: 68  ASAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEIST 127
           +S +IKDK +LLDYR+ +E  ME++K VE+ +K KAYS   L   + +DP ++E+ +IS 
Sbjct: 67  SSPDIKDKDSLLDYRRSVEIAMEKYKAVEKASKEKAYSNISLKKSETLDPQERERRDISE 126

Query: 128 WLVTSIDALNIQVSSV 143
           +L   ID L  Q  S+
Sbjct: 127 YLSQMIDELERQYDSL 142

Acts as component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. The NOT protein subcomplex negatively regulates the basal and activated transcription of many genes. Preferentially affects TC-type TATA element-dependent transcription. Could directly or indirectly inhibit component(s) of the general transcription machinery.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q12514|NOT5_YEAST General negative regulator of transcription subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOT5 PE=1 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/136 (46%), Positives = 93/136 (68%), Gaps = 4/136 (2%)

Query: 9   QGEIDRCLKKVSEGVETFEDIWQKVH--NATNSNQKEKYEADLKKEIKKLQRLRDQIKSW 66
           Q +ID+ LKKV EG+E F+DI++K    + +NS+ +EK E+DLK+EIKKLQ+ RDQIK+W
Sbjct: 7   QQDIDKLLKKVKEGIEDFDDIYEKFQSTDPSNSSHREKLESDLKREIKKLQKHRDQIKTW 66

Query: 67  IASAEIKDK-STLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKM-DPAQKEKEE 124
           ++  ++KDK S L+  R+LIE  MERFK VE+  KTK +SKE L     + DP + +K +
Sbjct: 67  LSKEDVKDKQSVLMTNRRLIENGMERFKSVEKLMKTKQFSKEALTNPDIIKDPKELKKRD 126

Query: 125 ISTWLVTSIDALNIQV 140
              ++   +D L  Q+
Sbjct: 127 QVLFIHDCLDELQKQL 142

Acts as component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. The NOT protein subcomplex negatively regulates the basal and activated transcription of many genes. Preferentially affects TC-type TATA element-dependent transcription. Could directly or indirectly inhibit component(s) of the general transcription machinery.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
357627853	752	hypothetical protein KGM_01172 [Danaus p	0.916	0.175	0.909	1e-66
345486115	662	PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT	0.937	0.203	0.896	2e-66
307178384	700	CCR4-NOT transcription complex subunit 3	0.958	0.197	0.869	5e-66
307206931	681	CCR4-NOT transcription complex subunit 3	0.937	0.198	0.896	6e-66
193645839	693	PREDICTED: hypothetical protein LOC10016	0.916	0.190	0.916	1e-65
322785939	682	hypothetical protein SINV_80465 [Solenop	0.930	0.196	0.888	4e-65
328717301	695	PREDICTED: hypothetical protein LOC10016	0.916	0.189	0.909	4e-65
328783040	660	PREDICTED: hypothetical protein LOC41179	0.937	0.204	0.874	5e-65
383854016	684	PREDICTED: uncharacterized protein LOC10	0.937	0.197	0.874	5e-65
340719054	684	PREDICTED: hypothetical protein LOC10064	0.937	0.197	0.874	5e-65

>gi|357627853|gb|EHJ77399.1| hypothetical protein KGM_01172 [Danaus plexippus]

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 120/132 (90%), Positives = 130/132 (98%)

Query: 9   QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
           QGEIDRCLKKV+EGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA
Sbjct: 8   QGEIDRCLKKVTEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 67

Query: 69  SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
           S EIKDKSTLL+YRKLIETQMERFKVVERETKTKAYSKEGLGA QK+DPAQKE+EE+S+W
Sbjct: 68  SGEIKDKSTLLEYRKLIETQMERFKVVERETKTKAYSKEGLGAAQKLDPAQKEREEMSSW 127

Query: 129 LVTSIDALNIQV 140
           L++SIDALN+Q+
Sbjct: 128 LISSIDALNLQI 139

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345486115|ref|XP_001603122.2| PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 3-like [Nasonia vitripennis]

 Score =  256 bits (654), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 121/135 (89%), Positives = 127/135 (94%)

Query: 9   QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
           QGEIDRCLKKV+EGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA
Sbjct: 8   QGEIDRCLKKVTEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 67

Query: 69  SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
           S EIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGA QK+DPAQKEKEE+S W
Sbjct: 68  SGEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAAQKLDPAQKEKEEVSNW 127

Query: 129 LVTSIDALNIQVSSV 143
           L  SID LN+Q+ + 
Sbjct: 128 LANSIDTLNLQIDTF 142

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178384|gb|EFN67129.1| CCR4-NOT transcription complex subunit 3 [Camponotus floridanus]

 Score =  255 bits (651), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 120/138 (86%), Positives = 130/138 (94%)

Query: 6   PGRQGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKS 65
           P + GEIDRCLKKV+EGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKS
Sbjct: 18  PEKGGEIDRCLKKVTEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKS 77

Query: 66  WIASAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEI 125
           WIAS EIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGA QK+DPAQKEK+E+
Sbjct: 78  WIASGEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAAQKLDPAQKEKDEV 137

Query: 126 STWLVTSIDALNIQVSSV 143
           ++WL  SIDALN+Q+ + 
Sbjct: 138 TSWLANSIDALNLQMDTF 155

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206931|gb|EFN84777.1| CCR4-NOT transcription complex subunit 3 [Harpegnathos saltator]

 Score =  254 bits (650), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 121/135 (89%), Positives = 128/135 (94%)

Query: 9   QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
           QGEIDRCLKKV+EGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA
Sbjct: 8   QGEIDRCLKKVTEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 67

Query: 69  SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
           S EIKDKSTLL+YRKLIETQMERFKVVERETKTKAYSKEGLGA QK+DPAQKE+EE+S W
Sbjct: 68  SGEIKDKSTLLEYRKLIETQMERFKVVERETKTKAYSKEGLGAAQKLDPAQKEREEVSNW 127

Query: 129 LVTSIDALNIQVSSV 143
           L  SIDALNIQ+ + 
Sbjct: 128 LANSIDALNIQLDTF 142

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193645839|ref|XP_001943612.1| PREDICTED: hypothetical protein LOC100165745 isoform 1 [Acyrthosiphon pisum]

 Score =  253 bits (647), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/132 (91%), Positives = 127/132 (96%)

Query: 9   QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
           QGEIDRCLKKV+EGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA
Sbjct: 8   QGEIDRCLKKVTEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 67

Query: 69  SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
           SAEIKDKS LLDYRKLIETQMERFKVVERETKTKAYSKEGLGA QK+DPAQKE+EEIS W
Sbjct: 68  SAEIKDKSALLDYRKLIETQMERFKVVERETKTKAYSKEGLGAAQKLDPAQKEREEISAW 127

Query: 129 LVTSIDALNIQV 140
           L  SI++LNIQ+
Sbjct: 128 LTQSIESLNIQI 139

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785939|gb|EFZ12558.1| hypothetical protein SINV_80465 [Solenopsis invicta]

 Score =  252 bits (643), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 119/134 (88%), Positives = 127/134 (94%)

Query: 10  GEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIAS 69
           GEIDRCLKKV+EGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIAS
Sbjct: 4   GEIDRCLKKVTEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIAS 63

Query: 70  AEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTWL 129
            EIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGA QK+DPAQKEK+E++ WL
Sbjct: 64  GEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAAQKLDPAQKEKDEVTNWL 123

Query: 130 VTSIDALNIQVSSV 143
             SIDALN+Q+ + 
Sbjct: 124 ANSIDALNLQMDTF 137

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328717301|ref|XP_003246166.1| PREDICTED: hypothetical protein LOC100165745 isoform 2 [Acyrthosiphon pisum]

 Score =  252 bits (643), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 120/132 (90%), Positives = 127/132 (96%)

Query: 9   QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
           +GEIDRCLKKV+EGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA
Sbjct: 10  KGEIDRCLKKVTEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 69

Query: 69  SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
           SAEIKDKS LLDYRKLIETQMERFKVVERETKTKAYSKEGLGA QK+DPAQKE+EEIS W
Sbjct: 70  SAEIKDKSALLDYRKLIETQMERFKVVERETKTKAYSKEGLGAAQKLDPAQKEREEISAW 129

Query: 129 LVTSIDALNIQV 140
           L  SI++LNIQ+
Sbjct: 130 LTQSIESLNIQI 141

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783040|ref|XP_395261.3| PREDICTED: hypothetical protein LOC411794 [Apis mellifera]

 Score =  251 bits (642), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 118/135 (87%), Positives = 128/135 (94%)

Query: 9   QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
           QGEIDRCLKKV+EGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIK+W+A
Sbjct: 8   QGEIDRCLKKVTEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKTWLA 67

Query: 69  SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
           S EIKDKSTLL+YRKLIETQMERFKVVERETKTKAYSKEGLGA QK+DPAQKE+EE+S W
Sbjct: 68  SGEIKDKSTLLEYRKLIETQMERFKVVERETKTKAYSKEGLGAAQKLDPAQKEREEVSNW 127

Query: 129 LVTSIDALNIQVSSV 143
           L  SIDALN+Q+ + 
Sbjct: 128 LANSIDALNLQLDTF 142

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854016|ref|XP_003702518.1| PREDICTED: uncharacterized protein LOC100878851 [Megachile rotundata]

 Score =  251 bits (642), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 118/135 (87%), Positives = 128/135 (94%)

Query: 9   QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
           QGEIDRCLKKV+EGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIK+W+A
Sbjct: 8   QGEIDRCLKKVTEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKTWLA 67

Query: 69  SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
           S EIKDKSTLL+YRKLIETQMERFKVVERETKTKAYSKEGLGA QK+DPAQKE+EE+S W
Sbjct: 68  SGEIKDKSTLLEYRKLIETQMERFKVVERETKTKAYSKEGLGAAQKLDPAQKEREEVSNW 127

Query: 129 LVTSIDALNIQVSSV 143
           L  SIDALN+Q+ + 
Sbjct: 128 LANSIDALNLQLDTF 142

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719054|ref|XP_003397972.1| PREDICTED: hypothetical protein LOC100648868 [Bombus terrestris]

 Score =  251 bits (642), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 118/135 (87%), Positives = 128/135 (94%)

Query: 9   QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
           QGEIDRCLKKV+EGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIK+W+A
Sbjct: 8   QGEIDRCLKKVTEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKTWLA 67

Query: 69  SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
           S EIKDKSTLL+YRKLIETQMERFKVVERETKTKAYSKEGLGA QK+DPAQKE+EE+S W
Sbjct: 68  SGEIKDKSTLLEYRKLIETQMERFKVVERETKTKAYSKEGLGAAQKLDPAQKEREEVSNW 127

Query: 129 LVTSIDALNIQVSSV 143
           L  SIDALN+Q+ + 
Sbjct: 128 LANSIDALNLQLDTF 142

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
UNIPROTKB|E1BCS1	744	CNOT3 "Uncharacterized protein	0.916	0.177	0.833	8.6e-56
UNIPROTKB|E2R344	710	CNOT3 "Uncharacterized protein	0.916	0.185	0.833	8.6e-56
UNIPROTKB|F6XXD6	753	CNOT3 "Uncharacterized protein	0.916	0.175	0.833	8.6e-56
UNIPROTKB|O75175	753	CNOT3 "CCR4-NOT transcription	0.916	0.175	0.833	8.6e-56
UNIPROTKB|F1RNH3	719	CNOT3 "Uncharacterized protein	0.916	0.183	0.833	8.6e-56
MGI|MGI:2385261	751	Cnot3 "CCR4-NOT transcription	0.916	0.175	0.825	2.3e-55
RGD|1304771	751	Cnot3 "CCR4-NOT transcription	0.916	0.175	0.825	2.3e-55
FB|FBgn0033029	844	l(2)NC136 "lethal (2) NC136" [	0.916	0.156	0.810	8.5e-54
ZFIN|ZDB-GENE-040927-6	901	cnot3a "CCR4-NOT transcription	0.916	0.146	0.810	1.8e-53
ZFIN|ZDB-GENE-030131-5838	908	cnot3b "CCR4-NOT transcription	0.916	0.145	0.795	1.9e-53

UNIPROTKB|E1BCS1 CNOT3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 110/132 (83%), Positives = 119/132 (90%)

Query:     9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
             QGEIDRCLKKVSEGVE FEDIWQK+HNA N+NQKEKYEADLKKEIKKLQRLRDQIK+W+A
Sbjct:     8 QGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVA 67

Query:    69 SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
             S EIKDK  L+D RKLIETQMERFKVVERETKTKAYSKEGLG  QK+DPAQKEKEE+  W
Sbjct:    68 SNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQW 127

Query:   129 LVTSIDALNIQV 140
             L  +ID LN+QV
Sbjct:   128 LTNTIDTLNMQV 139

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E2R344 CNOT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 110/132 (83%), Positives = 119/132 (90%)

Query:     9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
             QGEIDRCLKKVSEGVE FEDIWQK+HNA N+NQKEKYEADLKKEIKKLQRLRDQIK+W+A
Sbjct:     8 QGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVA 67

Query:    69 SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
             S EIKDK  L+D RKLIETQMERFKVVERETKTKAYSKEGLG  QK+DPAQKEKEE+  W
Sbjct:    68 SNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQW 127

Query:   129 LVTSIDALNIQV 140
             L  +ID LN+QV
Sbjct:   128 LTNTIDTLNMQV 139

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F6XXD6 CNOT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 110/132 (83%), Positives = 119/132 (90%)

Query:     9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
             QGEIDRCLKKVSEGVE FEDIWQK+HNA N+NQKEKYEADLKKEIKKLQRLRDQIK+W+A
Sbjct:     8 QGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVA 67

Query:    69 SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
             S EIKDK  L+D RKLIETQMERFKVVERETKTKAYSKEGLG  QK+DPAQKEKEE+  W
Sbjct:    68 SNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQW 127

Query:   129 LVTSIDALNIQV 140
             L  +ID LN+QV
Sbjct:   128 LTNTIDTLNMQV 139

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|O75175 CNOT3 "CCR4-NOT transcription complex subunit 3" [Homo sapiens (taxid:9606)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 110/132 (83%), Positives = 119/132 (90%)

Query:     9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
             QGEIDRCLKKVSEGVE FEDIWQK+HNA N+NQKEKYEADLKKEIKKLQRLRDQIK+W+A
Sbjct:     8 QGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVA 67

Query:    69 SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
             S EIKDK  L+D RKLIETQMERFKVVERETKTKAYSKEGLG  QK+DPAQKEKEE+  W
Sbjct:    68 SNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQW 127

Query:   129 LVTSIDALNIQV 140
             L  +ID LN+QV
Sbjct:   128 LTNTIDTLNMQV 139

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS

GO:2000036 "regulation of stem cell maintenance" evidence=IMP

GO:0030014 "CCR4-NOT complex" evidence=IDA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=TAS

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1RNH3 CNOT3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 110/132 (83%), Positives = 119/132 (90%)

Query:     9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
             QGEIDRCLKKVSEGVE FEDIWQK+HNA N+NQKEKYEADLKKEIKKLQRLRDQIK+W+A
Sbjct:     8 QGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVA 67

Query:    69 SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
             S EIKDK  L+D RKLIETQMERFKVVERETKTKAYSKEGLG  QK+DPAQKEKEE+  W
Sbjct:    68 SNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQW 127

Query:   129 LVTSIDALNIQV 140
             L  +ID LN+QV
Sbjct:   128 LTNTIDTLNMQV 139

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:2385261 Cnot3 "CCR4-NOT transcription complex, subunit 3" [Mus musculus (taxid:10090)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 109/132 (82%), Positives = 119/132 (90%)

Query:     9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
             QGEIDRCLKKVSEGVE FEDIWQK+HNA N+NQKEKYEADLKKEIKKLQRLRDQIK+W+A
Sbjct:     8 QGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVA 67

Query:    69 SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
             S EIKDK  L++ RKLIETQMERFKVVERETKTKAYSKEGLG  QK+DPAQKEKEE+  W
Sbjct:    68 SNEIKDKRQLIENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQW 127

Query:   129 LVTSIDALNIQV 140
             L  +ID LN+QV
Sbjct:   128 LTNTIDTLNMQV 139

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0030014 "CCR4-NOT complex" evidence=ISO

GO:2000036 "regulation of stem cell maintenance" evidence=ISO

RGD|1304771 Cnot3 "CCR4-NOT transcription complex, subunit 3" [Rattus norvegicus (taxid:10116)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 109/132 (82%), Positives = 119/132 (90%)

Query:     9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
             QGEIDRCLKKVSEGVE FEDIWQK+HNA N+NQKEKYEADLKKEIKKLQRLRDQIK+W+A
Sbjct:     8 QGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVA 67

Query:    69 SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
             S EIKDK  L++ RKLIETQMERFKVVERETKTKAYSKEGLG  QK+DPAQKEKEE+  W
Sbjct:    68 SNEIKDKRQLIENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQW 127

Query:   129 LVTSIDALNIQV 140
             L  +ID LN+QV
Sbjct:   128 LTNTIDTLNMQV 139

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

FB|FBgn0033029 l(2)NC136 "lethal (2) NC136" [Drosophila melanogaster (taxid:7227)]

 Score = 560 (202.2 bits), Expect = 8.5e-54, P = 8.5e-54
 Identities = 111/137 (81%), Positives = 123/137 (89%)

Query:     9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQK-----EKYEADLKKEIKKLQRLRDQI 63
             QGEIDRCLKKV+EGVETFEDIW+KVHNATN+NQK     EKYEADLKKEIKKLQRLRDQI
Sbjct:     8 QGEIDRCLKKVAEGVETFEDIWKKVHNATNTNQKQKHLQEKYEADLKKEIKKLQRLRDQI 67

Query:    64 KSWIASAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKE 123
             KSWIASAEIKDKS+LL+ R+LIETQMERFKVVERETKTKAYSKEGLGA QKMDPAQ+ K+
Sbjct:    68 KSWIASAEIKDKSSLLENRRLIETQMERFKVVERETKTKAYSKEGLGAAQKMDPAQRIKD 127

Query:   124 EISTWLVTSIDALNIQV 140
             +   WL +SI +L IQ+
Sbjct:   128 DARNWLTSSISSLQIQI 144

GO:0006351 "transcription, DNA-dependent" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0030014 "CCR4-NOT complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-040927-6 cnot3a "CCR4-NOT transcription complex, subunit 3a" [Danio rerio (taxid:7955)]

 Score = 559 (201.8 bits), Expect = 1.8e-53, P = 1.8e-53
 Identities = 107/132 (81%), Positives = 118/132 (89%)

Query:     9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
             QGEIDRCLKKV+EGVE FEDIW+K+HNA N+NQKEKYEADLKKEIKKLQRLRDQIK+W+A
Sbjct:     8 QGEIDRCLKKVAEGVEQFEDIWKKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVA 67

Query:    69 SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
             S EIKDK  L++ RKLIETQMERFKVVERETKTKAYSKEGLG  QK+DPAQKEKEE   W
Sbjct:    68 SNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEETEQW 127

Query:   129 LVTSIDALNIQV 140
             L  +ID LN+QV
Sbjct:   128 LTNTIDTLNMQV 139

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

ZFIN|ZDB-GENE-030131-5838 cnot3b "CCR4-NOT transcription complex, subunit 3b" [Danio rerio (taxid:7955)]

 Score = 559 (201.8 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 105/132 (79%), Positives = 119/132 (90%)

Query:     9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
             QGEIDRCLKKV+EGVE FEDIW+K+HNA N+NQKEKYE+DLKKEIKKLQRLRDQIK+W+A
Sbjct:     8 QGEIDRCLKKVTEGVEQFEDIWKKLHNAANANQKEKYESDLKKEIKKLQRLRDQIKTWVA 67

Query:    69 SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
             S EIKDK  L++ RKLIETQMERFK+VERETKTKAYSKEGLG  QK+DPAQKEKEE+  W
Sbjct:    68 SNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQW 127

Query:   129 LVTSIDALNIQV 140
             L  +ID LN+QV
Sbjct:   128 LTNTIDTLNMQV 139

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8K0V4	CNOT3_MOUSE	No assigned EC number	0.8257	0.9166	0.1757	yes	N/A
O75175	CNOT3_HUMAN	No assigned EC number	0.8333	0.9166	0.1752	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	144
pfam04065	233	pfam04065, Not3, Not1 N-terminal domain, CCR4-Not	2e-64
COG5665	548	COG5665, NOT5, CCR4-NOT transcriptional regulation	4e-35

>gnl|CDD|217869 pfam04065, Not3, Not1 N-terminal domain, CCR4-Not complex component

 Score =  195 bits (498), Expect = 2e-64
 Identities = 84/132 (63%), Positives = 111/132 (84%)

Query: 9   QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
           Q EID+ LKKV+EG+E+F+ I++K+ NATN++QKEK E+DLK+EIKKLQRLRDQIK+W++
Sbjct: 7   QQEIDKLLKKVAEGLESFDSIYEKLENATNASQKEKLESDLKREIKKLQRLRDQIKTWLS 66

Query: 69  SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
           S++IKDK +LL+ RKLIET MERFK VE+E KTKA+SKEGL A  K+DP +KEK E+  +
Sbjct: 67  SSDIKDKDSLLENRKLIETAMERFKAVEKEMKTKAFSKEGLSAASKLDPKEKEKAEVCDF 126

Query: 129 LVTSIDALNIQV 140
           L  +ID LN Q+
Sbjct: 127 LSNTIDELNKQI 138

Length = 233

>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]

 Score =  126 bits (318), Expect = 4e-35
 Identities = 60/128 (46%), Positives = 88/128 (68%)

Query: 13  DRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIASAEI 72
           D+ LKKV EG+E F+DI++K  +  NS+ +EK E+DLK+EIKKLQ+ RDQIK+W++  ++
Sbjct: 1   DKLLKKVKEGIEDFDDIYEKFQSTDNSSHREKLESDLKREIKKLQKHRDQIKTWLSKEDV 60

Query: 73  KDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTWLVTS 132
           KDK  L+  R+LIE  MERFK VE+  KTK +SKE L     +DP + +K +   ++   
Sbjct: 61  KDKQVLMTNRRLIENGMERFKSVEKLMKTKQFSKEALTNPDIIDPKELKKRDQVLFIHDC 120

Query: 133 IDALNIQV 140
           +D L  Q+
Sbjct: 121 LDELQKQL 128

Length = 548

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	144
PF04065	233	Not3: Not1 N-terminal domain, CCR4-Not complex com	100.0
KOG2150|consensus	575		100.0
COG5665	548	NOT5 CCR4-NOT transcriptional regulation complex,	100.0

>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []

Probab=100.00  E-value=1.5e-68  Score=440.58  Aligned_cols=141  Identities=66%  Similarity=0.924  Sum_probs=139.8

Q ss_pred             CCcCchhhhHHHHHHhHHHhHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHH
Q psy4906           3 RTYPGRQGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIASAEIKDKSTLLDYR   82 (144)
Q Consensus         3 ~~~RKLQ~EIDr~lKkV~EGi~~Fd~i~~K~~~~~~~~QKEKlE~DLKkEIKKLQR~RdQIK~W~~~~diKdk~~L~e~R   82 (144)
                      |++||||+|||+|||||+|||+.||+||+||++++|+|||||||+|||||||||||||||||+|+++||||||++|+++|
T Consensus         1 m~~RKLQ~Eid~~lKkv~EG~~~F~~i~~K~~~~~n~~QKEK~E~DLKkEIKKLQR~RdQIK~W~~~~diKdk~~L~e~R   80 (233)
T PF04065_consen    1 MAKRKLQQEIDRTLKKVQEGVEEFDEIYEKVESATNQNQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIKDKKKLLENR   80 (233)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcccchhhhcccccCCCchHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy4906          83 KLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTWLVTSIDALNIQVSSV  143 (144)
Q Consensus        83 k~IE~~MErFK~~Eke~KtK~fSkegL~~~~~~dp~~~~k~e~~~wl~~~id~L~~QiE~~  143 (144)
                      ++||++||+||+|||+||||||||+||++++++||.++++.+++.||+++|++|+.|||.|
T Consensus        81 k~IE~~MErFK~vEkesKtKafSkeGL~~~~k~dp~e~ek~e~~~wl~~~Id~L~~QiE~~  141 (233)
T PF04065_consen   81 KLIEEQMERFKVVEKESKTKAFSKEGLMAASKLDPKEKEKEEARDWLKDSIDELNRQIEQL  141 (233)
T ss_pred             HHHHHHHHHHHHHHHHhcccccchhhhhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999986

This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2150|consensus

Probab=100.00  E-value=8e-66  Score=463.98  Aligned_cols=141  Identities=61%  Similarity=0.919  Sum_probs=139.8

Q ss_pred             CCcCchhhhHHHHHHhHHHhHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHH
Q psy4906           3 RTYPGRQGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIASAEIKDKSTLLDYR   82 (144)
Q Consensus         3 ~~~RKLQ~EIDr~lKkV~EGi~~Fd~i~~K~~~~~~~~QKEKlE~DLKkEIKKLQR~RdQIK~W~~~~diKdk~~L~e~R   82 (144)
                      |++||||+|||||||||+|||+.||+||+||++++|.|||||||+|||||||||||||||||||++++|||||+.|++||
T Consensus         1 ~~~RKLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~n~sqkeK~e~DLKkEIKKLQRlRdQIKtW~ss~dIKDK~~L~d~R   80 (575)
T KOG2150|consen    1 MAKRKLQQEIDRCLKKVDEGVEIFDEIYEKLHSANNVSQKEKLESDLKKEIKKLQRLRDQIKTWQSSSDIKDKDSLLDNR   80 (575)
T ss_pred             CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcccchhhhcccccCCCchHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy4906          83 KLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTWLVTSIDALNIQVSSV  143 (144)
Q Consensus        83 k~IE~~MErFK~~Eke~KtK~fSkegL~~~~~~dp~~~~k~e~~~wl~~~id~L~~QiE~~  143 (144)
                      |+||.+|||||+|||+||||||||+||+.+.++||++++|.|+.+||+++||+|++|+|+|
T Consensus        81 rlIE~~MErfK~vEke~KtKa~SkegL~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~  141 (575)
T KOG2150|consen   81 RLIEQRMERFKAVEKEMKTKAFSKEGLSAAEKLDPKEKEKRDTMDWISNQIDELERQVDSF  141 (575)
T ss_pred             HHHHHHHHHHHHHHHHhhccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999986

>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]

Probab=100.00  E-value=6.3e-47  Score=333.00  Aligned_cols=131  Identities=46%  Similarity=0.743  Sum_probs=128.4

Q ss_pred             HHHHHhHHHhHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHH
Q psy4906          13 DRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIASAEIKDKSTLLDYRKLIETQMERF   92 (144)
Q Consensus        13 Dr~lKkV~EGi~~Fd~i~~K~~~~~~~~QKEKlE~DLKkEIKKLQR~RdQIK~W~~~~diKdk~~L~e~Rk~IE~~MErF   92 (144)
                      +++|++|-|||+.||+||+|+++++|.+||||||+|||++||||||+|||||||++++|||||..|++||++||..||+|
T Consensus         1 ~~~~~~~~e~i~~fd~iyek~~~s~~~s~~ekle~dlk~~ikklq~~rdqiktw~s~~dikdk~~l~~nrrlie~~me~f   80 (548)
T COG5665           1 DKLLKKVKEGIEDFDDIYEKFQSTDNSSHREKLESDLKREIKKLQKHRDQIKTWLSKEDVKDKQVLMTNRRLIENGMERF   80 (548)
T ss_pred             ChhHHHHHhhhhhHHHHHHHHhccCchhHHHHHhhHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHhHHHHHhHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcccchhhhcccccCCCchHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy4906          93 KVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTWLVTSIDALNIQVSSV  143 (144)
Q Consensus        93 K~~Eke~KtK~fSkegL~~~~~~dp~~~~k~e~~~wl~~~id~L~~QiE~~  143 (144)
                      |+|||+||||+||+|||+.+..+||++.++.++..||.+|+++|.+|.|.+
T Consensus        81 k~ve~~mk~k~fske~ls~~~~~dpke~~k~d~i~~i~~~~~el~~q~e~~  131 (548)
T COG5665          81 KSVEKLMKTKQFSKEALTNPDIIDPKELKKRDQVLFIHDCLDELQKQLEQY  131 (548)
T ss_pred             HHHHHHHHHHHhhHhhccCcccCChhHhccccceehHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	144
d1ez3a_	124	Syntaxin 1A N-terminal domain {Rat (Rattus norvegi	84.96

>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Syntaxin 1A N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.96  E-value=3.8  Score=27.15  Aligned_cols=92  Identities=20%  Similarity=0.289  Sum_probs=64.6

Q ss_pred             hhHHHHHHhHHHhHHHHHHHHHHHhhcCCcch--HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----------ccc-h
Q psy4906          10 GEIDRCLKKVSEGVETFEDIWQKVHNATNSNQ--KEKYEADLKKEIKKLQRLRDQIKSWIASAE-----------IKD-K   75 (144)
Q Consensus        10 ~EIDr~lKkV~EGi~~Fd~i~~K~~~~~~~~Q--KEKlE~DLKkEIKKLQR~RdQIK~W~~~~d-----------iKd-k   75 (144)
                      ++|...+..|...|......+.++.+++++.+  +..+++.+..=.+.-..++..|+..-.+++           ..- +
T Consensus        13 ~~Ir~~I~~i~~~v~~i~~~~~~~l~~~~~~~~~~~~l~~~~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~   92 (124)
T d1ez3a_          13 EEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRK   92 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence            46778888999999999999999988876554  777877766555666667777776633221           111 1


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhc
Q psy4906          76 STLLDYRKLIETQMERFKVVERETKT  101 (144)
Q Consensus        76 ~~L~e~Rk~IE~~MErFK~~Eke~Kt  101 (144)
                      ....-..+..-..|..|-.++-+.|.
T Consensus        93 ~q~~~L~~kf~e~m~~yq~~q~~yr~  118 (124)
T d1ez3a_          93 TQHSTLSRKFVEVMSEYNATQSDYRE  118 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            13556677777889999888877664