Psyllid ID: psy4926

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MRVRKGEEGRDKEEEEEEEEEEREMSDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCPHNPRSALKGRESINMRGKVCVRCESQAMRPNLGYRCPGHGTMDRSTRWSALSTPHCHGRWMRLQVESALRPGLVDNFISDVNTCPICEEGPAFIFV
Secondary Structure (PSIPRED)
cEEcccccccccHHHHHHHHHccccccEEEccccccccccccccccEEEEEEEEEccccccccccccccEEEcccccccccccccccccccEEcccccEEEccccccccccccccccccccccccccEEEcccccccccEEEEEEcccccccccccccccccccccccccccEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccEEEEc
Coil and Loop (DISEMBL)
mrvrkgeegrdkeeeeEEEEEEremsdcqvgsweawsecdtecgpgtmvrtrkaiqepknggkhcptltqkrsclgtrcphnprsalkgresinmrgkvcvrcesqamrpnlgyrcpghgtmdrstrwsalstphchgrwMRLQVESalrpglvdnfisdvntcpiceegpafifv
Flexible Loop (DISEMBL)
mrvrkgeegrdkeeeeeeeeeeremsdcqvgswEAWSECDTECGPGTMVRTRKAiqepknggkhcptltqkrsclgtrcphnprsalkgresinmRGKVCvrcesqamrpnlgyrcpghGTMDRSTRWSALSTPHCHGRWMRLQVESALRPGLVDNFISDVNTCPICEEGPAFIFV
Low Complexity Region (SEG)
MRVRkgeegrdkeeeeeeeeeereMSDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCPHNPRSALKGRESINMRGKVCVRCESQAMRPNLGYRCPGHGTMDRSTRWSALSTPHCHGRWMRLQVESALRPGLVDNFISDVNTCPICEEGPAFIFV
Disordered region (IsUnstruct)
*****************************VGSWEAWSECDTECG**************************************************MRGKVCVRCESQAMRPNLGYRCPGHGTMDRSTRWSALSTPHCHGRWMRLQVESALRPGLVDNFISDVNTCPICEEGPAFIF*
Disordered Region (DISOPRED)
MR******************EEREMSDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPK**GKHCPTLTQKRSCLGTRCPHNPRSALKGRESINMRGKVCVRCESQAMRPNLGYRCPGHGTMDRSTRWSALSTPHCHGRWMRLQV********************ICEEGPAFIFV
Disordered Region (DISEMBL)
********************************WEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCPHNPRSALKGRESINMRGKVCVRCESQAMRPNLGYRCPGHGTMDRSTRWSALSTPHCHGRWMRLQVESALRPGLVDNFISDVNTCPICEEGPAFIFV
Disordered Region (DISPRO)
**********************REMSDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTL*QKRSCLGTRCPHNPRSALKGRESINMRGKVCVRCESQAMR****YRCP****MDRSTRWSALSTPHCHGRWMRLQVESALRPGLVDNFISDVNTCPICEEGPAFIFV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRxxxxxxxxxxxxxxxxxxxxxxMSDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCPHNPRSALKGRESINMRGKVCVRCESQAMRPNLGYRCPGHGTMDRSTRWSALSTPHCHGRWMRLQVESALRPGLVDNFISDVNTCPICEEGPAFIFV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	176	2.2.26 [Sep-21-2011]
P35446	807	Spondin-1 OS=Rattus norve	yes	N/A	0.375	0.081	0.402	2e-08
Q9GLX9	807	Spondin-1 OS=Bos taurus G	yes	N/A	0.318	0.069	0.438	2e-08
Q8VCC9	807	Spondin-1 OS=Mus musculus	yes	N/A	0.375	0.081	0.402	5e-08
Q9HCB6	807	Spondin-1 OS=Homo sapiens	yes	N/A	0.375	0.081	0.402	7e-08
Q9W770	802	Spondin-1 OS=Gallus gallu	yes	N/A	0.312	0.068	0.438	8e-08
Q8IVN8	264	Somatomedin-B and thrombo	no	N/A	0.738	0.492	0.264	1e-07
Q32L50	264	Somatomedin-B and thrombo	no	N/A	0.732	0.488	0.273	3e-07
P35447	803	Spondin-1 OS=Xenopus laev	N/A	N/A	0.278	0.061	0.423	8e-07
Q9UPZ6	1657	Thrombospondin type-1 dom	no	N/A	0.295	0.031	0.433	1e-05
Q69ZU6	1645	Thrombospondin type-1 dom	no	N/A	0.295	0.031	0.415	7e-05

>sp|P35446|SPON1_RAT Spondin-1 OS=Rattus norvegicus GN=Spon1 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 27  DCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCPHNPR-S 85
           DC++  W  WSEC+  CG G M+RTR    EP+ GG  CP   Q++ C   +C  +P   
Sbjct: 668 DCELSEWSQWSECNKSCGKGHMIRTRTIQMEPQFGGAPCPETVQRKKCRARKCLRSPSIQ 727

Query: 86  ALKGRES 92
            L+ RE+
Sbjct: 728 KLRWREA 734

Cell adhesion protein that promotes the attachment of spinal cord and sensory neuron cells and the outgrowth of neurites in vitro. May contribute to the growth and guidance of axons in both the spinal cord and the PNS.
Rattus norvegicus (taxid: 10116)

>sp|Q9GLX9|SPON1_BOVIN Spondin-1 OS=Bos taurus GN=SPON1 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 33/57 (57%)

Query: 27  DCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCPHNP 83
           DC++  W  WSEC+  CG G M+RTR    EP+ GG  CP   Q++ C   +C  NP
Sbjct: 668 DCELTEWSQWSECNKSCGKGHMIRTRMIQMEPQFGGTPCPETVQRKKCRIRKCLRNP 724

Cell adhesion protein that promotes the attachment of spinal cord and sensory neuron cells and the outgrowth of neurites in vitro. May contribute to the growth and guidance of axons in both the spinal cord and the PNS (By similarity). Major factor for vascular smooth muscle cell.

Bos taurus (taxid: 9913)

>sp|Q8VCC9|SPON1_MOUSE Spondin-1 OS=Mus musculus GN=Spon1 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 27  DCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCPHNPR-S 85
           DC++  W  WSEC+  CG G M+RTR    EP+ GG  CP   Q++ C   +C  +P   
Sbjct: 668 DCELSEWSQWSECNKSCGKGHMIRTRTIQMEPQFGGVPCPETVQRKKCRTRKCLRSPSVQ 727

Query: 86  ALKGRES 92
            L+ RE+
Sbjct: 728 KLRWREA 734

Cell adhesion protein that promotes the attachment of spinal cord and sensory neuron cells and the outgrowth of neurites in vitro. May contribute to the growth and guidance of axons in both the spinal cord and the PNS.

Mus musculus (taxid: 10090)

>sp|Q9HCB6|SPON1_HUMAN Spondin-1 OS=Homo sapiens GN=SPON1 PE=1 SV=2

 Score = 57.0 bits (136), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 27  DCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCPHNPR-S 85
           DC++  W  WSEC+  CG G ++RTR    EP+ GG  CP   Q++ C   +C  NP   
Sbjct: 668 DCELTEWSQWSECNKSCGKGHVIRTRMIQMEPQFGGAPCPETVQRKKCRIRKCLRNPSIQ 727

Query: 86  ALKGRES 92
            L+ RE+
Sbjct: 728 KLRWREA 734

Cell adhesion protein that promotes the attachment of spinal cord and sensory neuron cells and the outgrowth of neurites in vitro. May contribute to the growth and guidance of axons in both the spinal cord and the PNS (By similarity). Major factor for vascular smooth muscle cell.

Homo sapiens (taxid: 9606)

>sp|Q9W770|SPON1_CHICK Spondin-1 OS=Gallus gallus GN=SPON1 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 32/57 (56%)

Query: 27  DCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCPHNP 83
           DC++  W  WSEC+T CG G M+RTR    EP+ GG  CP   Q+  C   +C   P
Sbjct: 663 DCELTEWSQWSECNTSCGKGHMIRTRMIKIEPQFGGTACPETVQRTKCRVRKCLRGP 719

Cell adhesion protein that promotes the attachment of spinal cord and sensory neuron cells and the outgrowth of neurites in vitro. May contribute to the growth and guidance of axons in both the spinal cord and the PNS (By similarity). Somite-derived spondin 1 is an inhibitory signal involved in patterning the segmental migration of neural crest cells and their topographical segregation within the rostral somites in vitro. May be required to prevent the lateral drifting of the commissural axons after having crossed the floor plate.

Gallus gallus (taxid: 9031)

>sp|Q8IVN8|SBSPO_HUMAN Somatomedin-B and thrombospondin type-1 domain-containing protein OS=Homo sapiens GN=SBSPON PE=1 SV=2

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 66/189 (34%), Gaps = 59/189 (31%)

Query: 28  CQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCL------GTRCPH 81
           C VG W  WS C  +C P T VR R   QEP+NGG  CP L ++  CL      G  C H
Sbjct: 75  CFVGEWSPWSGCADQCKPTTRVRRRSVQQEPQNGGAPCPPLEERAGCLEYSTPQGQDCGH 134

Query: 82  NPRSALKGRESIN----------------------MRGK--------------------- 98
               A     + N                      M  K                     
Sbjct: 135 TYVPAFITTSAFNKERTRQATSPHWSTHTEDAGYCMEFKTESLTPHCALENWPLTRWMQY 194

Query: 99  ------VCVRCESQAMRPNLGYRCPGHGT---MDRSTRWSALSTPHCHGRWMRLQVESAL 149
                 VCV C+  AM  ++  RC G G     +++  W A+  P C G W +++     
Sbjct: 195 LREGYTVCVDCQPPAMN-SVSLRCSGDGLDSDGNQTLHWQAIGNPRCQGTWKKVRRVDQC 253

Query: 150 RPGLVDNFI 158
               V +FI
Sbjct: 254 SCPAVHSFI 262

Homo sapiens (taxid: 9606)

>sp|Q32L50|SBSPO_BOVIN Somatomedin-B and thrombospondin type-1 domain-containing protein OS=Bos taurus GN=SBSPON PE=2 SV=2

 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 70/190 (36%), Gaps = 61/190 (32%)

Query: 28  CQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCL------GTRCPH 81
           C VG W  WS C ++C P   VR R   QEP+NGG+ CP L ++  CL      G  C H
Sbjct: 75  CIVGEWSPWSGCASQCRPTARVRRRAVQQEPQNGGEPCPALEERAGCLEYATPQGEDCGH 134

Query: 82  NPRSALKGRESIN----------------------MRGK--------------------- 98
               A     + N                      M  K                     
Sbjct: 135 AFVPAFITTSAFNKERTRQAASPHWTTSTEDAGYCMEFKTESLTHHCALENRPLTRWMQY 194

Query: 99  ------VCVRCESQAMRPNLGYRCPGHGT---MDRSTRWSALSTPHCHGRWMRL-QVESA 148
                 VCV C+  AM  ++  RC G G     +++  W A+  P C G W ++ +VE  
Sbjct: 195 LREGYTVCVDCQPPAMN-SVSLRCSGDGLDSDGNQTLHWQAIGNPRCQGTWKKVRRVEQC 253

Query: 149 LRPGLVDNFI 158
             P  V +FI
Sbjct: 254 SCPA-VHSFI 262

Bos taurus (taxid: 9913)

>sp|P35447|SPON1_XENLA Spondin-1 OS=Xenopus laevis GN=spon1 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query: 28  CQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRC 79
           C++  W  WSEC+  CG G M+RTR    EP+ GG  CP   Q++ C   +C
Sbjct: 665 CELTEWSYWSECNKSCGKGHMIRTRMITMEPQFGGAVCPETVQRKKCRLRKC 716

Promotes the attachment of spinal cord and sensory neuron cells and the outgrowth of neurites in vitro. May contribute to the growth and guidance of axons in both the spinal cord and the PNS.

Xenopus laevis (taxid: 8355)

>sp|Q9UPZ6|THS7A_HUMAN Thrombospondin type-1 domain-containing protein 7A OS=Homo sapiens GN=THSD7A PE=1 SV=4

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 29/53 (54%)

Query: 27  DCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRC 79
           DC V  + AWSEC   CG G   RTR  +  P+ GG  CP LT+ + C  + C
Sbjct: 194 DCIVSEFSAWSECSKTCGSGLQHRTRHVVAPPQFGGSGCPNLTEFQVCQSSPC 246

Homo sapiens (taxid: 9606)

>sp|Q69ZU6|THS7A_MOUSE Thrombospondin type-1 domain-containing protein 7A OS=Mus musculus GN=Thsd7a PE=2 SV=2

 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 27/53 (50%)

Query: 27  DCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRC 79
           DC V  +  WSEC   CG G   RTR  +  P+ GG  CP LT+ + C    C
Sbjct: 183 DCIVSEFSPWSECSRTCGSGLQHRTRHVVAPPQYGGSGCPNLTEFQVCQSNPC 235

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
328698394	286	PREDICTED: RPE-spondin-like [Acyrthosiph	0.789	0.486	0.395	3e-35
194762644	375	GF20404 [Drosophila ananassae] gi|190629	0.676	0.317	0.424	1e-15
357631739	214	hypothetical protein KGM_15432 [Danaus p	0.772	0.635	0.303	4e-15
195566131	377	GD16006 [Drosophila simulans] gi|1942040	0.312	0.145	0.672	1e-14
195399149	342	GJ15945 [Drosophila virilis] gi|19415060	0.329	0.169	0.620	2e-14
195479541	326	GE17329 [Drosophila yakuba] gi|194188450	0.312	0.168	0.654	2e-14
198467916	321	GA13568 [Drosophila pseudoobscura pseudo	0.568	0.311	0.421	3e-14
221329831	395	CG42339, isoform B [Drosophila melanogas	0.301	0.134	0.679	5e-14
108383377	391	IP06836p [Drosophila melanogaster]	0.301	0.135	0.679	8e-14
195060004	370	GH17600 [Drosophila grimshawi] gi|193896	0.301	0.143	0.641	9e-14

>gi|328698394|ref|XP_003240630.1| PREDICTED: RPE-spondin-like [Acyrthosiphon pisum]

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/210 (39%), Positives = 112/210 (53%), Gaps = 71/210 (33%)

Query: 27  DCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCP------ 80
           DC +  WE+WSECDTECG G M R R+ ++ P NGGKHCP++ QKR+C+GTRCP      
Sbjct: 88  DCVMSEWESWSECDTECGSGMMTRKRQVMKTPVNGGKHCPSMVQKRACMGTRCPNYPGSA 147

Query: 81  -------------------------HNPRSALKGRESINMRGK----------------- 98
                                    HN +  L  +E +++  K                 
Sbjct: 148 LKETAMLLPASLASNRLSNESQDIRHNLKYRL-SKEPVDLDSKEYCVLFEVMKATKACRK 206

Query: 99  ------------VCVRCESQAMRPNLGYRCPGHGTMDRSTRWSALSTPHCHGRWMRLQVE 146
                       VCVRC++Q MR +LG+RCPGHGTMDR+TRW+ LS PHCHG+W+RL  E
Sbjct: 207 VSEYSLLREGERVCVRCDTQVMRQSLGFRCPGHGTMDRATRWTVLSAPHCHGKWVRL--E 264

Query: 147 SALRPGLVDNFISDVNTCPICEEGPAFIFV 176
           SA +         D ++CP+C++G  F+FV
Sbjct: 265 SAGQ--------QDGHSCPMCKKGAQFVFV 286

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194762644|ref|XP_001963444.1| GF20404 [Drosophila ananassae] gi|190629103|gb|EDV44520.1| GF20404 [Drosophila ananassae]

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 63/125 (50%), Gaps = 6/125 (4%)

Query: 27  DCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRC-PHNPRS 85
           DCQVG W AWSECD  CG G M RTR+ +Q  +NGGKHCPTL QKR C G RC  H  + 
Sbjct: 53  DCQVGDWGAWSECDKSCGTGMMTRTRQILQAAQNGGKHCPTLLQKRGCQGYRCHGHRDKK 112

Query: 86  ALKGRESINMRGKVCVRCESQAMRPNLGYRCPGHGTMDR--STRWSALSTPHCHGRWMRL 143
            L+G E     G    +  S    P+L          ++   T  SAL T    G+    
Sbjct: 113 ILRGEEQKKCEGDAAQQVTS---LPDLSLEAGSELLAEQPNPTAASALGTETSEGKKHSE 169

Query: 144 QVESA 148
             ESA
Sbjct: 170 VKESA 174

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357631739|gb|EHJ79208.1| hypothetical protein KGM_15432 [Danaus plexippus]

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 85/211 (40%), Gaps = 75/211 (35%)

Query: 27  DCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLG-------TRC 79
           DC V  W  WSECD ECG G+M+R+R+ +Q P  GGKHCPTL Q+R+C         +  
Sbjct: 18  DCVVSGWGEWSECDNECGSGSMMRSRRVVQAPARGGKHCPTLVQRRACQSHHGCTEESDI 77

Query: 80  PHNPRSAL----------KGRESINMRGKV----------------CVRCE----SQAMR 109
           P    SA+             ES+++R  +                CV+ E    S+A  
Sbjct: 78  PLREESAMILPGSLSISRHSDESVDIRKNLRLRNPDDPESNSHREYCVQYEVTKVSKACH 137

Query: 110 PNLGY------------------------RCPGHGTMDRSTRWSALSTPHCHGRWMRLQV 145
            +  Y                        RC GHG    +TR+ AL  PHCHG+W+R   
Sbjct: 138 TDSDYKALREGATVCVMCETAALRRDLKWRCGGHGVSGHATRFYALVAPHCHGKWIRASN 197

Query: 146 ESALRPGLVDNFISDVNTCPICEEGPAFIFV 176
            +    G              C   P FIFV
Sbjct: 198 NADKNSG--------------CCLKPDFIFV 214

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195566131|ref|XP_002106644.1| GD16006 [Drosophila simulans] gi|194204026|gb|EDX17602.1| GD16006 [Drosophila simulans]

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 40/55 (72%)

Query: 25  MSDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRC 79
           M DCQVG W AWSECD  CG G M R R+ +Q  +NGGKHCPTL QKRSC G RC
Sbjct: 63  MLDCQVGDWGAWSECDRSCGTGMMTRNRQILQAAQNGGKHCPTLQQKRSCQGYRC 117

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195399149|ref|XP_002058183.1| GJ15945 [Drosophila virilis] gi|194150607|gb|EDW66291.1| GJ15945 [Drosophila virilis]

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 42/58 (72%)

Query: 22 EREMSDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRC 79
          E  + DCQVG W AWSECD  CG G M RTR+ +Q  +NGGKHCP+L QKR+C G RC
Sbjct: 8  ELSVLDCQVGDWGAWSECDKSCGAGMMTRTRQILQAVQNGGKHCPSLLQKRACQGYRC 65

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195479541|ref|XP_002100926.1| GE17329 [Drosophila yakuba] gi|194188450|gb|EDX02034.1| GE17329 [Drosophila yakuba]

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 40/55 (72%)

Query: 25 MSDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRC 79
          + DCQVG W AWSECD  CG G M R R+ +Q  +NGGKHCPTL QKRSC G RC
Sbjct: 10 LLDCQVGDWGAWSECDRSCGTGMMTRNRQILQAAQNGGKHCPTLQQKRSCQGYRC 64

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198467916|ref|XP_001354554.2| GA13568 [Drosophila pseudoobscura pseudoobscura] gi|198146166|gb|EAL31607.2| GA13568 [Drosophila pseudoobscura pseudoobscura]

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 56/102 (54%), Gaps = 2/102 (1%)

Query: 16  EEEEEEEREMSDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCL 75
           EE E   +   DC+ G W AWSECD  CG G M R R+ +Q  +NGGKHCPTL Q R+C 
Sbjct: 8   EELEVGSQLFLDCRAGDWSAWSECDKSCGNGMMTRRRQILQVAQNGGKHCPTLLQTRACQ 67

Query: 76  GTRCPHNPRSALKGRESINMRGKVCVRCESQAMRPNL--GYR 115
           G RC  +    +    ++ +   +     S A+R NL  GYR
Sbjct: 68  GFRCHGHHEKKILREMALLLPAALSHNVNSSAIRRNLRTGYR 109

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221329831|ref|NP_572674.3| CG42339, isoform B [Drosophila melanogaster] gi|220901730|gb|AAF47985.3| CG42339, isoform B [Drosophila melanogaster]

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 36/53 (67%), Positives = 39/53 (73%)

Query: 27  DCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRC 79
           DCQVG W AWSECD  CG G M R R+ +Q  +NGGKHCPTL QKRSC G RC
Sbjct: 83  DCQVGDWGAWSECDRSCGTGMMTRNRQILQAAQNGGKHCPTLQQKRSCQGYRC 135

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|108383377|gb|ABF85726.1| IP06836p [Drosophila melanogaster]

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 36/53 (67%), Positives = 39/53 (73%)

Query: 27  DCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRC 79
           DCQVG W AWSECD  CG G M R R+ +Q  +NGGKHCPTL QKRSC G RC
Sbjct: 97  DCQVGDWGAWSECDRSCGTGMMTRNRQILQAAQNGGKHCPTLQQKRSCQGYRC 149

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195060004|ref|XP_001995737.1| GH17600 [Drosophila grimshawi] gi|193896523|gb|EDV95389.1| GH17600 [Drosophila grimshawi]

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 39/53 (73%)

Query: 27 DCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRC 79
          DCQVG W AWSECD  CG G M RTR+ +Q  +NGGKHCP++ QKR C G RC
Sbjct: 4  DCQVGEWGAWSECDKSCGTGMMTRTRQILQAAQNGGKHCPSMLQKRGCQGYRC 56

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
FB|FBgn0259241	395	CG42339 [Drosophila melanogast	0.352	0.156	0.603	3.3e-27
UNIPROTKB|E2R4R5	264	SBSPON "Uncharacterized protei	0.301	0.200	0.452	1.5e-17
UNIPROTKB|Q32L50	264	SBSPON "Somatomedin-B and thro	0.301	0.200	0.452	1.6e-17
MGI|MGI:2684952	264	Sbspon "somatomedin B and thro	0.272	0.181	0.5	3e-17
UNIPROTKB|F1NB61	244	F1NB61 "Uncharacterized protei	0.346	0.25	0.417	3.2e-16
UNIPROTKB|F1SBE7	252	LOC100524118 "Uncharacterized	0.289	0.202	0.411	2.2e-14
UNIPROTKB|I3LR96	257	LOC100524118 "Uncharacterized	0.289	0.198	0.411	2.5e-14
UNIPROTKB|F1S981	287	LOC100516954 "Uncharacterized	0.590	0.362	0.371	1.6e-12
RGD|619918	807	Spon1 "spondin 1, extracellula	0.590	0.128	0.362	1.2e-11
UNIPROTKB|Q9GLX9	807	SPON1 "Spondin-1" [Bos taurus	0.590	0.128	0.371	2.6e-11

FB|FBgn0259241 CG42339 [Drosophila melanogaster (taxid:7227)]

 Score = 220 (82.5 bits), Expect = 3.3e-27, Sum P(2) = 3.3e-27
 Identities = 38/63 (60%), Positives = 44/63 (69%)

Query:    27 DCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCP-HNPRS 85
             DCQVG W AWSECD  CG G M R R+ +Q  +NGGKHCPTL QKRSC G RC  H+ + 
Sbjct:    83 DCQVGDWGAWSECDRSCGTGMMTRNRQILQAAQNGGKHCPTLQQKRSCQGYRCHGHHDKK 142

Query:    86 ALK 88
              L+
Sbjct:   143 ILR 145

GO:0006955 "immune response" evidence=IEA

GO:0030247 "polysaccharide binding" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

UNIPROTKB|E2R4R5 SBSPON "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 143 (55.4 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
 Identities = 24/53 (45%), Positives = 29/53 (54%)

Query:    28 CQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCP 80
             C VG W  WS C  +C P  +VR R   QEP+NGG  CP L ++  CL    P
Sbjct:    75 CIVGEWSPWSGCGDQCRPAALVRRRPVQQEPRNGGAPCPPLEERAGCLDYSTP 127

GO:0031012 "extracellular matrix" evidence=IEA

GO:0030247 "polysaccharide binding" evidence=IEA

GO:0006955 "immune response" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

UNIPROTKB|Q32L50 SBSPON "Somatomedin-B and thrombospondin type-1 domain-containing protein" [Bos taurus (taxid:9913)]

 Score = 140 (54.3 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
 Identities = 24/53 (45%), Positives = 30/53 (56%)

Query:    28 CQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCP 80
             C VG W  WS C ++C P   VR R   QEP+NGG+ CP L ++  CL    P
Sbjct:    75 CIVGEWSPWSGCASQCRPTARVRRRAVQQEPQNGGEPCPALEERAGCLEYATP 127

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0030247 "polysaccharide binding" evidence=IEA

GO:0006955 "immune response" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

MGI|MGI:2684952 Sbspon "somatomedin B and thrombospondin, type 1 domain containing" [Mus musculus (taxid:10090)]

 Score = 136 (52.9 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
 Identities = 24/48 (50%), Positives = 27/48 (56%)

Query:    28 CQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCL 75
             C VG W  WS C  +C P T VR R   QEP NGG  CP L ++  CL
Sbjct:    75 CFVGEWSPWSGCAGQCQPTTRVRRRSVRQEPLNGGAPCPPLEERAGCL 122

GO:0003674 "molecular_function" evidence=ND

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0006955 "immune response" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030247 "polysaccharide binding" evidence=IEA

UNIPROTKB|F1NB61 F1NB61 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 144 (55.7 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
 Identities = 28/67 (41%), Positives = 38/67 (56%)

Query:    28 CQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGT--RCP----H 81
             C VG W  WS C + CG G+  R+R+    P++GG+ CP L Q+R CLG    C     H
Sbjct:    67 CAVGPWGPWSGCSSPCGVGSKDRSRQVTVPPRHGGEPCPDLKQRRGCLGDDPACGAAKVH 126

Query:    82 NPRSALK 88
             NP ++ K
Sbjct:   127 NPVNSYK 133

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0006955 "immune response" evidence=IEA

GO:0030247 "polysaccharide binding" evidence=IEA

UNIPROTKB|F1SBE7 LOC100524118 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 123 (48.4 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
 Identities = 21/51 (41%), Positives = 26/51 (50%)

Query:    28 CQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTR 78
             C V  W  WS C   C     VR R  +QEP+NGG  CP L ++  C+  R
Sbjct:    67 CVVAEWSGWSRCVKPCQVSYRVRQRHVLQEPRNGGAPCPPLEERAGCVEYR 117

GO:0030247 "polysaccharide binding" evidence=IEA

GO:0006955 "immune response" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

UNIPROTKB|I3LR96 LOC100524118 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 123 (48.4 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
 Identities = 21/51 (41%), Positives = 26/51 (50%)

Query:    28 CQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTR 78
             C V  W  WS C   C     VR R  +QEP+NGG  CP L ++  C+  R
Sbjct:    67 CVVAEWSGWSRCVKPCQVSYRVRQRHVLQEPRNGGAPCPPLEERAGCVEYR 117

GO:0030247 "polysaccharide binding" evidence=IEA

GO:0006955 "immune response" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

UNIPROTKB|F1S981 LOC100516954 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 169 (64.5 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 42/113 (37%), Positives = 54/113 (47%)

Query:    27 DCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCPHNPR-S 85
             DC++  W  WSEC+  CG G M+RTR    EP+ GG  CP   Q++ C   +C  NP   
Sbjct:   148 DCELTEWSQWSECNKSCGKGHMIRTRMIQMEPQFGGAPCPETVQRKKCRIRKCLRNPSIQ 207

Query:    86 ALKGRESINMRGKVCVRCESQAMRPNLGYRCPGHGTMDRSTRWSALSTPHCHG 138
              L+ RE+   R    +R ES       G + PG   M   T WS   T  C G
Sbjct:   208 KLRWREARESRRSEQLREESD------GEQFPGC-RMRPWTAWSEC-TKLCGG 252

GO:0031012 "extracellular matrix" evidence=IDA

RGD|619918 Spon1 "spondin 1, extracellular matrix protein" [Rattus norvegicus (taxid:10116)]

 Score = 170 (64.9 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 41/113 (36%), Positives = 54/113 (47%)

Query:    27 DCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCPHNPR-S 85
             DC++  W  WSEC+  CG G M+RTR    EP+ GG  CP   Q++ C   +C  +P   
Sbjct:   668 DCELSEWSQWSECNKSCGKGHMIRTRTIQMEPQFGGAPCPETVQRKKCRARKCLRSPSIQ 727

Query:    86 ALKGRESINMRGKVCVRCESQAMRPNLGYRCPGHGTMDRSTRWSALSTPHCHG 138
              L+ RE+   R    +R ES       G + PG   M   T WS   T  C G
Sbjct:   728 KLRWREARESRRSEQLREESD------GEQFPGC-RMRPWTAWSEC-TKLCGG 772

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO

GO:0007155 "cell adhesion" evidence=IEA

GO:0031012 "extracellular matrix" evidence=ISO

UNIPROTKB|Q9GLX9 SPON1 "Spondin-1" [Bos taurus (taxid:9913)]

 Score = 167 (63.8 bits), Expect = 2.6e-11, P = 2.6e-11
 Identities = 42/113 (37%), Positives = 54/113 (47%)

Query:    27 DCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCPHNPR-S 85
             DC++  W  WSEC+  CG G M+RTR    EP+ GG  CP   Q++ C   +C  NP   
Sbjct:   668 DCELTEWSQWSECNKSCGKGHMIRTRMIQMEPQFGGTPCPETVQRKKCRIRKCLRNPSIQ 727

Query:    86 ALKGRESINMRGKVCVRCESQAMRPNLGYRCPGHGTMDRSTRWSALSTPHCHG 138
              L+ RE+   R    +R ES       G + PG   M   T WS   T  C G
Sbjct:   728 NLRWREARESRRSEQLREESD------GDQFPGC-RMRPWTAWSEC-TKLCGG 772

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	176
smart00209	53	smart00209, TSP1, Thrombospondin type 1 repeats	3e-05

>gnl|CDD|214559 smart00209, TSP1, Thrombospondin type 1 repeats

 Score = 39.5 bits (92), Expect = 3e-05
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 30 VGSWEAWSECDTECGPGTMVRTRKAI-QEPKNGGKHCPTL-TQKRSCLGTRCP 80
             W  WS C   CG G   RTR      P+NGG  C     + R+C    CP
Sbjct: 1  WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRACNEQPCP 53

Type 1 repeats in thrombospondin-1 bind and activate TGF-beta. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
smart00209	53	TSP1 Thrombospondin type 1 repeats. Type 1 repeats	99.22
PF00090	49	TSP_1: Thrombospondin type 1 domain; InterPro: IPR	99.18
KOG3539|consensus	508		99.16
PTZ00087	340	thrombosponding-related protein; Provisional	99.02
KOG3538|consensus	845		98.56
PTZ00441	576	sporozoite surface protein 2 (SSP2); Provisional	98.12
KOG1480|consensus	909		98.02
KOG3539|consensus	508		97.72
KOG4597|consensus	560		97.66
KOG4597|consensus	560		97.42
PTZ00087	340	thrombosponding-related protein; Provisional	97.0
smart00209	53	TSP1 Thrombospondin type 1 repeats. Type 1 repeats	96.62
PF00090	49	TSP_1: Thrombospondin type 1 domain; InterPro: IPR	96.52
KOG3538|consensus	845		96.24
KOG1480|consensus	909		95.99
PTZ00441	576	sporozoite surface protein 2 (SSP2); Provisional	91.56

>smart00209 TSP1 Thrombospondin type 1 repeats

Probab=99.22  E-value=2.2e-11  Score=76.62  Aligned_cols=51  Identities=37%  Similarity=0.905  Sum_probs=44.0

Q ss_pred             CCCCCCCCcCCCccCCCeEEeEEeeee-cCCCCCCCCCCC-eeeecccCCCCC
Q psy4926          30 VGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPTL-TQKRSCLGTRCP   80 (176)
Q Consensus        30 ~s~Ws~Ws~CS~tCG~G~r~R~R~c~~-~p~~gg~~C~~~-~e~~~C~~~~Cp   80 (176)
                      |+.|++|+.||++||.|+++|.|.|.. .+..++..|.+. .+++.|+..+|+
T Consensus         1 ~~~ws~Ws~Cs~tCg~G~~~R~r~c~~~~~~~~~~~C~~~~~~~~~C~~~~C~   53 (53)
T smart00209        1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRACNEQPCP   53 (53)
T ss_pred             CCCccCcccccCCCCCCeEEEEEecCCCCCCCCCCcCcCCCCEEeecCCCCCc
Confidence            578999999999999999999999985 444588899994 499999998885

Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.

>PF00090 TSP_1: Thrombospondin type 1 domain; InterPro: IPR000884 Thrombospondins are multimeric multidomain glycoproteins that function at cell surfaces and in the extracellular matrix milieu

Probab=99.18  E-value=2.2e-11  Score=75.46  Aligned_cols=48  Identities=35%  Similarity=0.889  Sum_probs=41.1

Q ss_pred             CCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCC-CeeeecccCCCC
Q psy4926          31 GSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPT-LTQKRSCLGTRC   79 (176)
Q Consensus        31 s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~-~~e~~~C~~~~C   79 (176)
                      ++|++|++||++||.|+++|.|.|... ..++..|.+ ..+++.|+..+|
T Consensus         1 s~Ws~Ws~CS~tCg~G~~~R~r~c~~~-~~~~~~C~~~~~~~~~C~~~~C   49 (49)
T PF00090_consen    1 SEWSEWSPCSATCGGGVQTRTRTCQSP-PDGGESCPGPDQETRPCNMQPC   49 (49)
T ss_dssp             TSBSS--SSSSSSSSEEEEEEECSCTT-BTTSSTCHSCSEEEEEEECSSS
T ss_pred             CccCcCCCCccccccCCceeEEEECcc-cCCCCCCCCCCcCcCccCcCcC
Confidence            579999999999999999999999866 677889998 678999998876

They act as regulators of cell interactions in vertebrates. They are divided into two subfamilies, A and B, according to their overall molecular organisation. The subgroup A proteins TSP-1 and -2 contain an N-terminal domain, a VWFC domain, three TSP1 repeats, three EGF-like domains, TSP3 repeats and a C-terminal domain. They are assembled as trimer. The subgroup B thrombospondins, designated TSP-3, -4, and COMP (cartilage oligomeric matrix protein, also designated TSP-5) are distinct in that they contain unique N-terminal regions, lack the VWFC domain and TSP1 repeats, contain four copies of EGF-like domains, and are assembled as pentamers []. EGF, TSP3 repeats and the C-terminal domain are thus the hallmark of a thrombospondin. This repeat was first described in 1986 by Lawler and Hynes []. It was found in the thrombospondin protein where it is repeated 3 times. Now a number of proteins involved in the complement pathway (properdin, C6, C7, C8A, C8B, C9) [] as well as extracellular matrix protein like mindin, F-spondin [], SCO-spondin and even the circumsporozoite surface protein 2 and TRAP proteins of Plasmodium [, ] contain one or more instance of this repeat. It has been involved in cell-cell interaction, inhibition of angiogenesis [] and apoptosis []. The intron-exon organisation of the properdin gene confirms the hypothesis that the repeat might have evolved by a process involving exon shuffling []. A study of properdin structure provides some information about the structure of the thrombospondin type I repeat [].; PDB: 3VDJ_A 3VDL_B 3VDK_A 3R6B_A 1LSL_A 4E0S_B 3T5O_A 4A5W_B 1SZL_A 1VEX_A ....

>KOG3539|consensus

Probab=99.16  E-value=2.6e-11  Score=105.89  Aligned_cols=132  Identities=27%  Similarity=0.516  Sum_probs=86.3

Q ss_pred             eecCCCCCCCCcchhhhhcccc-----------CCCCCCCCCCCCCcCCCccCCCeEEeEEeee-ecCCCCCCCCCCCee
Q psy4926           3 VRKGEEGRDKEEEEEEEEEERE-----------MSDCQVGSWEAWSECDTECGPGTMVRTRKAI-QEPKNGGKHCPTLTQ   70 (176)
Q Consensus         3 ~~~~~~~~~~~~g~~~e~~~C~-----------~~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~-~~p~~gg~~C~~~~e   70 (176)
                      +||+.+-+ .+...+.+...|.           +.+|.++.|++|+.|+++||.|.+.|.|.-. ..+..++..|+.++|
T Consensus       332 ~r~~~~e~-nc~edd~~~~~~~~~~~~~~~~e~p~eC~vs~ws~Ws~C~~sCGkg~r~R~R~yv~p~~a~~~~~~pe~~e  410 (508)
T KOG3539|consen  332 RRKKLYEL-NCNEDDEQAEKCMNPTHLSAEHETPLECEVSEWSQWSECSKSCGKGIRIRIRAYVNPIPASNGSCCPELVE  410 (508)
T ss_pred             HHhhhhhh-ccCcchHHHhhhcCccccccccCCcccceecccccchhhhhccCCCceEEEEEEecccccccCCCCcchhh
Confidence            34444444 4444444444443           4689999999999999999999999999555 678889999999999


Q ss_pred             eecccCCCCCCCCC---CCccC-CCCeeeeceeeecCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCceEEeeec
Q psy4926          71 KRSCLGTRCPHNPR---SALKG-RESINMRGKVCVRCESQAMRPNLGYRCPGHGTMDRSTRWSALSTPHCHGRWMRLQVE  146 (176)
Q Consensus        71 ~~~C~~~~Cp~~~~---~~ws~-g~g~~~R~r~C~~c~~~~~~~~~~~~C~~~~~~~~w~~Ws~Cs~~~Cgg~~~~~~~~  146 (176)
                      .+.|....|.-...   ..|.+ ..+-..         -.+... ....=...+..+.|+.|++|++. ||++.+.+.|+
T Consensus       411 ~~~Cva~~c~~a~~~~~~~~~e~~e~~~~---------~~a~~~-~~s~~~~~Cr~s~Ws~WseCs~s-CG~G~~~R~rt  479 (508)
T KOG3539|consen  411 EKKCVAKKCECAPSIQKLRNREAAESRRS---------ENARKP-SDSEQFPGCRVSPWSEWSECSKS-CGGGIMERYRT  479 (508)
T ss_pred             hhhcccccccccchhhhhhhhhhhhccch---------hhccCC-CCcccCCCCcccccchhhhhhhh-cCCcceehhhh
Confidence            99999887754221   01111 000000         000000 00000124567899999999999 99998888776

>PTZ00087 thrombosponding-related protein; Provisional

Probab=99.02  E-value=2.6e-10  Score=93.71  Aligned_cols=51  Identities=29%  Similarity=0.718  Sum_probs=43.3

Q ss_pred             CCCCCCCCCCCcCCCccC--CCeEEeEEeeeecCCCCCCCCC-C-CeeeecccCC--CCCC
Q psy4926          27 DCQVGSWEAWSECDTECG--PGTMVRTRKAIQEPKNGGKHCP-T-LTQKRSCLGT--RCPH   81 (176)
Q Consensus        27 ~c~~s~Ws~Ws~CS~tCG--~G~r~R~R~c~~~p~~gg~~C~-~-~~e~~~C~~~--~Cp~   81 (176)
                      +-.|++|++|+.||++||  .|+|+|+|.|.+|   +| .|. | ..|++.|+..  +|+.
T Consensus       230 ~~~WSeWSeWS~CSkTCGgggGVQtRtRtCTNP---gG-dC~~G~s~ETr~CN~~cPPCp~  286 (340)
T PTZ00087        230 NMFYTEWGEWSNCSMECDHPDNVQIRERKCAHP---SG-DCFKGDLKETRPCQVPLPPCNS  286 (340)
T ss_pred             CCCCCCCCCCCCcCcccCCCCCeEeEEEeCCCC---CC-CCCCCchhhcccccCCCCCCCC
Confidence            448999999999999999  6999999999876   24 784 7 7899999986  6753

>KOG3538|consensus

Probab=98.56  E-value=9.4e-08  Score=90.84  Aligned_cols=66  Identities=35%  Similarity=0.666  Sum_probs=57.8

Q ss_pred             hhhhccccCCCCCCCCCCCCCcCCCccCCCeEEeEEeeee-cCCCCCCCCCC-CeeeecccCCCCCCC
Q psy4926          17 EEEEEEREMSDCQVGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPT-LTQKRSCLGTRCPHN   82 (176)
Q Consensus        17 ~~e~~~C~~~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~-~p~~gg~~C~~-~~e~~~C~~~~Cp~~   82 (176)
                      ......+.+.|+.|+.|++|++||.|||.|+++|.|.|.+ .|.++|+.|.+ ....+.|+..+|+..
T Consensus       469 ~~~~~~~~~~dg~w~~w~~ws~Cs~TCg~Gv~~~~r~C~np~p~~gg~~C~g~~~~~~~c~~~~C~~~  536 (845)
T KOG3538|consen  469 TPRAPPCIPFDGGWSSWSPWSPCSRTCGGGVQTRSRLCNNPRPANGGKYCPGERLRYRSCNTEPCPPP  536 (845)
T ss_pred             ccccCCCCCCCCCccccCCCCccccccCCceeeeeEECCCCCCCCCCccCCCCCceeeecCCCCCCCC
Confidence            3344555667999999999999999999999999999995 78889999999 789999999999983

>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional

Probab=98.12  E-value=1.9e-06  Score=78.17  Aligned_cols=47  Identities=34%  Similarity=0.939  Sum_probs=38.1

Q ss_pred             CCCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCCCeeeecccCCCCCCCC
Q psy4926          30 VGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCPHNP   83 (176)
Q Consensus        30 ~s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~~~e~~~C~~~~Cp~~~   83 (176)
                      .++|++||+||.|||.|+++|+|.|..      ..|.+. .++.|+...|++..
T Consensus       240 c~~Ws~Ws~Cs~tCg~G~~~R~R~~~~------~~C~~~-~~~~C~~~~Cp~~~  286 (576)
T PTZ00441        240 CGPWDEWTPCSVTCGKGTHSRSRPILH------EGCTTH-MVEECEEEECPVEP  286 (576)
T ss_pred             CCCCCCCCCCccccCCCceeeeecccC------CCCcch-hhhccccCCCCCCC
Confidence            368999999999999999999999953      237752 36889888898743

>KOG1480|consensus

Probab=98.02  E-value=4.7e-06  Score=77.19  Aligned_cols=49  Identities=39%  Similarity=0.824  Sum_probs=41.1

Q ss_pred             CCCCCCCCCCCCcCCCccCCCeEEeEEeeee-cCCCCCCCCCC-Ceeeecc
Q psy4926          26 SDCQVGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPT-LTQKRSC   74 (176)
Q Consensus        26 ~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~-~p~~gg~~C~~-~~e~~~C   74 (176)
                      +++.|++|++|+.|..-|+.|.+.|.|.|.+ .|.++|..|.+ ..+...|
T Consensus       220 v~ggwsswt~w~~c~~rc~~~~q~rtrtc~npApln~G~~c~g~s~~~~~c  270 (909)
T KOG1480|consen  220 VNGGWSEWTEWSTCNVRCGRGHQKRTRTCTNPAPLNGGAFCEGESVQKISC  270 (909)
T ss_pred             EcCcccccccceeeeecccccccccCCCCCCccccCCcccccccccccccC
Confidence            6789999999999999999999999999995 77888888887 4444443

>KOG3539|consensus

Probab=97.72  E-value=1e-05  Score=71.34  Aligned_cols=52  Identities=38%  Similarity=0.934  Sum_probs=38.9

Q ss_pred             CCCCCCCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCC--C---eeeecccCCCC
Q psy4926          26 SDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPT--L---TQKRSCLGTRC   79 (176)
Q Consensus        26 ~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~--~---~e~~~C~~~~C   79 (176)
                      ..|.+++|++|+.||++||.|++.|+|..++...  -+.|+.  .   ..+..|+.++|
T Consensus       452 ~~Cr~s~Ws~WseCs~sCG~G~~~R~rt~~n~~~--r~~c~~~t~~k~~~~~rC~~~~c  508 (508)
T KOG3539|consen  452 PGCRVSPWSEWSECSKSCGGGIMERYRTVLNHFK--RKQCPQFTSCKKKKTIRCNGHDC  508 (508)
T ss_pred             CCCcccccchhhhhhhhcCCcceehhhhhhcccc--cccCcchhhhhhcccccccCCCC
Confidence            3589999999999999999999999999886433  256775  1   23333666654

>KOG4597|consensus

Probab=97.66  E-value=0.00019  Score=63.68  Aligned_cols=125  Identities=24%  Similarity=0.396  Sum_probs=80.5

Q ss_pred             hhhhccccCCCCCCCCCC--CCC-cCCCccCCCeEEeEEeeee--cCCCCCCCC-----CC--CeeeecccCCCCCCCCC
Q psy4926          17 EEEEEEREMSDCQVGSWE--AWS-ECDTECGPGTMVRTRKAIQ--EPKNGGKHC-----PT--LTQKRSCLGTRCPHNPR   84 (176)
Q Consensus        17 ~~e~~~C~~~~c~~s~Ws--~Ws-~CS~tCG~G~r~R~R~c~~--~p~~gg~~C-----~~--~~e~~~C~~~~Cp~~~~   84 (176)
                      ..+...|.+.+|. +.|.  +|+ .+++-||.+++.|.++|..  ........|     .+  +..+++|...||+-...
T Consensus       312 ~~e~~~cdmgpC~-g~~f~tew~~~~~aqcg~~~~~rsv~C~~s~~~~~p~E~C~~a~~sg~~pad~~pc~~GPC~~e~r  390 (560)
T KOG4597|consen  312 PAECLTCDMGPCT-GLTFVTEWSWHLDAQCGDCETTRSVVCKGSQGRFEPLEACLVACASGPRPADTRPCAQGPCPCEPR  390 (560)
T ss_pred             chhhcCCCCcccC-CccchhhhhhhcccccCCceeeeeeeecCccccccchhhhhhhccCCCCCccccccccCCCCCccc
Confidence            3444458888886 2343  665 6888999999999999983  222223344     44  67899999999964322


Q ss_pred             ---CCccC-----CCCeeeeceeeec---CCCCCCCCC---------CCCCCCCCCCCCCC--CCCccCCCCCCCCceEE
Q psy4926          85 ---SALKG-----RESINMRGKVCVR---CESQAMRPN---------LGYRCPGHGTMDRS--TRWSALSTPHCHGRWMR  142 (176)
Q Consensus        85 ---~~ws~-----g~g~~~R~r~C~~---c~~~~~~~~---------~~~~C~~~~~~~~w--~~Ws~Cs~~~Cgg~~~~  142 (176)
                         ++|++     +.|-+.|...|+-   |..+..+..         -..+|....+-..|  +.|+.|+.. |+|+.+-
T Consensus       391 W~~s~wsqCs~eCg~g~~~r~vica~~~a~~f~v~~p~~ca~~~r~~~~~s~~~~~c~~~w~sTewsec~~s-cgGgaqv  469 (560)
T KOG4597|consen  391 WAYSPWSQCSGECGGGGNNREVICACEQACPFEVVDPSCCACLPRPKLTQSCCRSDCTITWRSTEWSECPAS-CGGGAQV  469 (560)
T ss_pred             eeecchhhhccccCCCCcceeEEEeeecCCCcccCCcccccccCCccccccccccccceeeeecccccCchh-cCCcceE
Confidence               67777     7778888888864   332222211         12333333333445  889999999 9987644


Q ss_pred             e
Q psy4926         143 L  143 (176)
Q Consensus       143 ~  143 (176)
                      +
T Consensus       470 r  470 (560)
T KOG4597|consen  470 R  470 (560)
T ss_pred             e
Confidence            4

>KOG4597|consensus

Probab=97.42  E-value=0.00041  Score=61.61  Aligned_cols=129  Identities=19%  Similarity=0.360  Sum_probs=84.9

Q ss_pred             CCCCcchhhhhccccCCCCCCCCC---CCCCcCCCccCCCeEEeEEeeeec---CC-CCCCCCC--C---CeeeecccCC
Q psy4926          10 RDKEEEEEEEEEEREMSDCQVGSW---EAWSECDTECGPGTMVRTRKAIQE---PK-NGGKHCP--T---LTQKRSCLGT   77 (176)
Q Consensus        10 ~~~~~g~~~e~~~C~~~~c~~s~W---s~Ws~CS~tCG~G~r~R~R~c~~~---p~-~gg~~C~--~---~~e~~~C~~~   77 (176)
                      +|+..|.-.-+..|+.+.|  .+|   ..|..||+.||.|+++|...|...   +. .-...|+  .   ..+-..|++.
T Consensus       244 ~nq~~e~p~vtstcql~ic--~ewq~~a~w~tCs~rcg~g~~~rdv~c~s~~ge~a~daads~p~~~~~~~~e~~~cdmg  321 (560)
T KOG4597|consen  244 PNQTVENPVVTSTCQLVIC--NEWQADAGWYTCSARCGAGFLRRDVPCSSVKGEGALDAADSCPADEQEKPAECLTCDMG  321 (560)
T ss_pred             CccccCCcceeeeeeEEEc--chhhcCCCceeeccccccceeeccceeeeecccccccccccCCcccccCchhhcCCCCc
Confidence            6777788888888888877  466   589999999999999999988731   11 1112344  2   3455669999


Q ss_pred             CCCCCCC-CCccC------CCCeeeeceeeec----------C-----CCCCCCCCCCCCCCCC--CCCCCC--CCCccC
Q psy4926          78 RCPHNPR-SALKG------RESINMRGKVCVR----------C-----ESQAMRPNLGYRCPGH--GTMDRS--TRWSAL  131 (176)
Q Consensus        78 ~Cp~~~~-~~ws~------g~g~~~R~r~C~~----------c-----~~~~~~~~~~~~C~~~--~~~~~w--~~Ws~C  131 (176)
                      +|...+. ..|+.      |+++++|.+.|..          |     .++.. . +.++|.-.  ....+|  +.|++|
T Consensus       322 pC~g~~f~tew~~~~~aqcg~~~~~rsv~C~~s~~~~~p~E~C~~a~~sg~~p-a-d~~pc~~GPC~~e~rW~~s~wsqC  399 (560)
T KOG4597|consen  322 PCTGLTFVTEWSWHLDAQCGDCETTRSVVCKGSQGRFEPLEACLVACASGPRP-A-DTRPCAQGPCPCEPRWAYSPWSQC  399 (560)
T ss_pred             ccCCccchhhhhhhcccccCCceeeeeeeecCccccccchhhhhhhccCCCCC-c-cccccccCCCCCccceeecchhhh
Confidence            9974333 45663      8999999999974          2     11111 1 22333221  123346  899999


Q ss_pred             CCCCCCCceEEe
Q psy4926         132 STPHCHGRWMRL  143 (176)
Q Consensus       132 s~~~Cgg~~~~~  143 (176)
                      +.- |+++-.++
T Consensus       400 s~e-Cg~g~~~r  410 (560)
T KOG4597|consen  400 SGE-CGGGGNNR  410 (560)
T ss_pred             ccc-cCCCCcce
Confidence            988 98764433

>PTZ00087 thrombosponding-related protein; Provisional

Probab=97.00  E-value=0.0012  Score=54.94  Aligned_cols=45  Identities=13%  Similarity=0.203  Sum_probs=32.3

Q ss_pred             CCCCCCCCCCccCCCCCCC--CceEEeeec-cccCCCCc-cccccCCCCCC
Q psy4926         119 HGTMDRSTRWSALSTPHCH--GRWMRLQVE-SALRPGLV-DNFISDVNTCP  165 (176)
Q Consensus       119 ~~~~~~w~~Ws~Cs~~~Cg--g~~~~~~~~-~~~~~~~~-~~~~~~~~~c~  165 (176)
                      ...|++|+.|+.|+.+ ||  ++-+.|.|. +|+ ++.+ .+......+|.
T Consensus       230 ~~~WSeWSeWS~CSkT-CGgggGVQtRtRtCTNP-gGdC~~G~s~ETr~CN  278 (340)
T PTZ00087        230 NMFYTEWGEWSNCSME-CDHPDNVQIRERKCAHP-SGDCFKGDLKETRPCQ  278 (340)
T ss_pred             CCCCCCCCCCCCcCcc-cCCCCCeEeEEEeCCCC-CCCCCCCchhhccccc
Confidence            4579999999999999 99  466666666 675 4566 35555555663

>smart00209 TSP1 Thrombospondin type 1 repeats

Probab=96.62  E-value=0.0019  Score=39.91  Aligned_cols=24  Identities=21%  Similarity=0.333  Sum_probs=20.4

Q ss_pred             CCCCCCCccCCCCCCCCceEEeeec
Q psy4926         122 MDRSTRWSALSTPHCHGRWMRLQVE  146 (176)
Q Consensus       122 ~~~w~~Ws~Cs~~~Cgg~~~~~~~~  146 (176)
                      |+.|+.|+.|+.+ ||++++.+.|.
T Consensus         1 ~~~ws~Ws~Cs~t-Cg~G~~~R~r~   24 (53)
T smart00209        1 WSEWSEWSPCSVT-CGGGVQTRTRS   24 (53)
T ss_pred             CCCccCcccccCC-CCCCeEEEEEe
Confidence            5689999999999 99987777764

Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.

>PF00090 TSP_1: Thrombospondin type 1 domain; InterPro: IPR000884 Thrombospondins are multimeric multidomain glycoproteins that function at cell surfaces and in the extracellular matrix milieu

Probab=96.52  E-value=0.0021  Score=39.02  Aligned_cols=23  Identities=22%  Similarity=0.366  Sum_probs=18.1

Q ss_pred             CCCCCCccCCCCCCCCceEEeeec
Q psy4926         123 DRSTRWSALSTPHCHGRWMRLQVE  146 (176)
Q Consensus       123 ~~w~~Ws~Cs~~~Cgg~~~~~~~~  146 (176)
                      ++|+.|+.|+.+ ||++.+.+.+.
T Consensus         1 s~Ws~Ws~CS~t-Cg~G~~~R~r~   23 (49)
T PF00090_consen    1 SEWSEWSPCSAT-CGGGVQTRTRT   23 (49)
T ss_dssp             TSBSS--SSSSS-SSSEEEEEEEC
T ss_pred             CccCcCCCCccc-cccCCceeEEE
Confidence            479999999999 99988777766

They act as regulators of cell interactions in vertebrates. They are divided into two subfamilies, A and B, according to their overall molecular organisation. The subgroup A proteins TSP-1 and -2 contain an N-terminal domain, a VWFC domain, three TSP1 repeats, three EGF-like domains, TSP3 repeats and a C-terminal domain. They are assembled as trimer. The subgroup B thrombospondins, designated TSP-3, -4, and COMP (cartilage oligomeric matrix protein, also designated TSP-5) are distinct in that they contain unique N-terminal regions, lack the VWFC domain and TSP1 repeats, contain four copies of EGF-like domains, and are assembled as pentamers []. EGF, TSP3 repeats and the C-terminal domain are thus the hallmark of a thrombospondin. This repeat was first described in 1986 by Lawler and Hynes []. It was found in the thrombospondin protein where it is repeated 3 times. Now a number of proteins involved in the complement pathway (properdin, C6, C7, C8A, C8B, C9) [] as well as extracellular matrix protein like mindin, F-spondin [], SCO-spondin and even the circumsporozoite surface protein 2 and TRAP proteins of Plasmodium [, ] contain one or more instance of this repeat. It has been involved in cell-cell interaction, inhibition of angiogenesis [] and apoptosis []. The intron-exon organisation of the properdin gene confirms the hypothesis that the repeat might have evolved by a process involving exon shuffling []. A study of properdin structure provides some information about the structure of the thrombospondin type I repeat [].; PDB: 3VDJ_A 3VDL_B 3VDK_A 3R6B_A 1LSL_A 4E0S_B 3T5O_A 4A5W_B 1SZL_A 1VEX_A ....

>KOG3538|consensus

Probab=96.24  E-value=0.0038  Score=59.81  Aligned_cols=65  Identities=22%  Similarity=0.428  Sum_probs=51.0

Q ss_pred             CCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCCCeeeecccCCCCC-CCCCCCccC-----CCCeeeeceeeec
Q psy4926          31 GSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCP-HNPRSALKG-----RESINMRGKVCVR  102 (176)
Q Consensus        31 s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~~~e~~~C~~~~Cp-~~~~~~ws~-----g~g~~~R~r~C~~  102 (176)
                      ..++.|+.||++||.|++.|...|..... .      ..+.+.|+..+|+ .+....|++     +.|++.|.+.|..
T Consensus       768 w~~~~w~~Cs~~cg~g~~~~~~~C~~~~~-~------~~~~~~C~~~~c~~~w~~~~w~~Cs~~cg~g~~~r~v~C~~  838 (845)
T KOG3538|consen  768 WAHGPWSECSASCGGGVQSRKVSCRRTFD-E------VPRWRKCNLQPCPPRWVAGEWSECSRTCGSGLRARSVACRD  838 (845)
T ss_pred             eecCCccccccccCCCceecccceeeccc-c------CccccccCCCCCCCcceecCCchhhhhhcCccccccccccc
Confidence            45689999999999999999999985322 1      3577889998893 333367888     8899999999875

>KOG1480|consensus

Probab=95.99  E-value=0.0057  Score=57.32  Aligned_cols=70  Identities=31%  Similarity=0.542  Sum_probs=55.9

Q ss_pred             CCCCCcchhhhhcccc---CCCCCCCCCCCCCcCCCccCCCeEEeEEeee-ecCCCCCCCCCC-CeeeecccCCCCCC
Q psy4926           9 GRDKEEEEEEEEEERE---MSDCQVGSWEAWSECDTECGPGTMVRTRKAI-QEPKNGGKHCPT-LTQKRSCLGTRCPH   81 (176)
Q Consensus         9 ~~~~~~g~~~e~~~C~---~~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~-~~p~~gg~~C~~-~~e~~~C~~~~Cp~   81 (176)
                      +.-.+.|....+.+|.   ++|+.|+.|+.|+.|+..|-   ..|+|.|. .+|.++|+.|.+ ..+...|....|-.
T Consensus       256 ~G~~c~g~s~~~~~c~~~c~~dg~w~~ws~ws~c~~~c~---~~r~r~ct~p~p~ngg~~c~g~~~~s~~c~~glc~~  330 (909)
T KOG1480|consen  256 GGAFCEGESVQKISCTVLCPVDGGWSSWSDWSACSSECH---HYRTRECTAPPPMNGGKPCFGLDLMSQNCTDGLCTA  330 (909)
T ss_pred             CcccccccccccccCcccccccCceeehhhhhhccCccc---cceeeeeccCCcccCCccccCccccCCCCccccccc
Confidence            4556677777788886   58889999999999998884   67999999 688999999999 56777777665543

>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional

Probab=91.56  E-value=0.14  Score=47.02  Aligned_cols=25  Identities=12%  Similarity=0.121  Sum_probs=20.8

Q ss_pred             CCCCCCCccCCCCCCCCceEEeeecc
Q psy4926         122 MDRSTRWSALSTPHCHGRWMRLQVES  147 (176)
Q Consensus       122 ~~~w~~Ws~Cs~~~Cgg~~~~~~~~~  147 (176)
                      ++.|+.|+.||.+ ||.+.+.++|.-
T Consensus       240 c~~Ws~Ws~Cs~t-Cg~G~~~R~R~~  264 (576)
T PTZ00441        240 CGPWDEWTPCSVT-CGKGTHSRSRPI  264 (576)
T ss_pred             CCCCCCCCCCccc-cCCCceeeeecc
Confidence            3689999999999 998887777663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	176
1w0r_A	442	Properdin, factor P; X-RAY scattering, analytical	99.77
1w0r_A	442	Properdin, factor P; X-RAY scattering, analytical	99.76
1lsl_A	113	Thrombospondin 1; TSP-1, TSR, cell adhesion; HET:	99.73
3r6b_A	153	Thrombospondin-1; cell adhesion, disulfide bond, E	99.68
1vex_A	56	F-spondin; TSR, cell adhesion; NMR {Rattus norvegi	99.51
1szl_A	61	F-spondin; TSR, cell adhesion; NMR {Rattus norvegi	99.5
1lsl_A	113	Thrombospondin 1; TSP-1, TSR, cell adhesion; HET:	99.43
3r6b_A	153	Thrombospondin-1; cell adhesion, disulfide bond, E	99.37
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	99.28
2bbx_A	49	Trap, thrombospondin-related anonymous protein; el	99.27
3ghm_A	410	A disintegrin and metalloproteinase with thrombos	99.11
2rjq_A	378	Adamts-5; metalloprotease domain, aggrecanase, cle	98.96
4hqf_A	281	Thrombospondin-related anonymous protein, trap; ma	98.66
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	98.6
3vdj_A	77	Circumsporozoite (CS) protein; TSR, ATSR, cell inv	98.43
3ojy_B	537	Complement component C8 beta chain; macpf, lipocal	98.33
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	98.19
3ojy_B	537	Complement component C8 beta chain; macpf, lipocal	98.15
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	98.08
1vex_A	56	F-spondin; TSR, cell adhesion; NMR {Rattus norvegi	97.52
4hqo_A	266	Sporozoite surface protein 2; malaria, gliding mot	97.42
2bbx_A	49	Trap, thrombospondin-related anonymous protein; el	97.14
1szl_A	61	F-spondin; TSR, cell adhesion; NMR {Rattus norvegi	96.5
3ghm_A	410	A disintegrin and metalloproteinase with thrombos	95.36
3vdj_A	77	Circumsporozoite (CS) protein; TSR, ATSR, cell inv	94.99
2rjq_A	378	Adamts-5; metalloprotease domain, aggrecanase, cle	94.06
4hqf_A	281	Thrombospondin-related anonymous protein, trap; ma	92.42
4hqo_A	266	Sporozoite surface protein 2; malaria, gliding mot	86.31

>1w0r_A Properdin, factor P; X-RAY scattering, analytical ultracentrifugation, complement, thrombospondin type I repeats, constrained modelling; NMR {Homo sapiens} PDB: 1w0s_A

Probab=99.77  E-value=1.3e-18  Score=152.45  Aligned_cols=137  Identities=21%  Similarity=0.385  Sum_probs=110.3

Q ss_pred             CCCCCcchhhhhccccCC-----CCCCCCCCCCCcCCCccCCCeEEeEEeeee-cCCCCCCCCCC-CeeeecccC-CCCC
Q psy4926           9 GRDKEEEEEEEEEEREMS-----DCQVGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPT-LTQKRSCLG-TRCP   80 (176)
Q Consensus         9 ~~~~~~g~~~e~~~C~~~-----~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~-~p~~gg~~C~~-~~e~~~C~~-~~Cp   80 (176)
                      +...+.+...+++.|+..     ++.|+.|++|+.||++||.|+++|.|.|.+ .|.++|..|.+ ..+++.|+. .+||
T Consensus       207 ~g~~C~g~~~e~~~C~~~~~Cp~~g~W~~Ws~WS~CS~tCG~G~q~R~r~C~~~~p~~gg~~C~g~~~~~~~C~~~~~Cp  286 (442)
T 1w0r_A          207 PGKPCPGLAYEQRRCTGLPPCPVAGGWGPWGPVSPCPVTCGLGQTMEQRTCNHPVPQHGGPFCAGDATRTHICNTAVPCP  286 (442)
T ss_pred             CCcCCCCCcceeEeecccCCcccccccccccccCCcCCccCCCceeeEEEeCCCCCCCCCCCCCCCCcceeeCCCCCCCC
Confidence            556778888999999854     457899999999999999999999999995 66789999999 789999998 6999


Q ss_pred             CCCC----CCccC-----------C--CCeeeeceeeec-------CCCCCCCCC-C--CCCCCCCCCCCCCCCCccCCC
Q psy4926          81 HNPR----SALKG-----------R--ESINMRGKVCVR-------CESQAMRPN-L--GYRCPGHGTMDRSTRWSALST  133 (176)
Q Consensus        81 ~~~~----~~ws~-----------g--~g~~~R~r~C~~-------c~~~~~~~~-~--~~~C~~~~~~~~w~~Ws~Cs~  133 (176)
                      ++..    ++|+.           +  .|++.|.|.|..       |.+...+.+ |  ..+|+.++.|++|+.|+.|+.
T Consensus       287 ~~g~W~~Ws~Ws~Cs~~~~~~~tCg~~~G~q~R~r~C~~~~~~g~~C~g~~~~~~~C~~~~~Cp~~~~W~~Ws~Ws~Cs~  366 (442)
T 1w0r_A          287 VDGEWDSWGEWSPCIRRNMKSISCQEIPGQQSRGRTCRGRKFDGHRCAGQQQDIRHCYSIQHCPLKGSWSEWSTWGLCMP  366 (442)
T ss_pred             CCCEecCCCCcCCCCCCccccCccCCCCCEEEEEEEecCCcCCCcccCCCChhhccccCCCCCCCCCeecCcCCccccCC
Confidence            7532    45554           2  689999999974       555433321 3  467998999999999999999


Q ss_pred             CCCC-CceEEeeec
Q psy4926         134 PHCH-GRWMRLQVE  146 (176)
Q Consensus       134 ~~Cg-g~~~~~~~~  146 (176)
                      + || ++.+.+.|.
T Consensus       367 t-CG~~G~~~R~r~  379 (442)
T 1w0r_A          367 P-CGPNPTRARQRL  379 (442)
T ss_pred             C-cCCCCeEEEEEE
Confidence            9 99 777666666

>1w0r_A Properdin, factor P; X-RAY scattering, analytical ultracentrifugation, complement, thrombospondin type I repeats, constrained modelling; NMR {Homo sapiens} PDB: 1w0s_A

Probab=99.76  E-value=2.1e-18  Score=151.02  Aligned_cols=129  Identities=22%  Similarity=0.392  Sum_probs=102.9

Q ss_pred             hhhhccccCCC-----CCCCCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCC-Ceeeeccc-CCCCCCCCC----C
Q psy4926          17 EEEEEEREMSD-----CQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPT-LTQKRSCL-GTRCPHNPR----S   85 (176)
Q Consensus        17 ~~e~~~C~~~~-----c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~-~~e~~~C~-~~~Cp~~~~----~   85 (176)
                      ..++++|+...     +.|+.|++|+.||++||.|+++|+|.|.++...++..|.+ +.+++.|+ ..+|+.+..    +
T Consensus        94 ~~~~~~C~~~~Ccp~~~~W~~W~~Ws~CS~tCG~G~q~R~r~C~~~~~~~~~~C~g~~~~~~~C~~~~~Cp~~~~W~~Ws  173 (442)
T 1w0r_A           94 EWQLQACEDQQCCPEMGGWSGWGPWEPCSVTCSKGTRTRRRACNHPAPKCGGHCPGQAQESEACDTQQVCPTHGAWATWG  173 (442)
T ss_pred             ccccccccCCccCCCCCceeeCCCCCCCCCCCCCCceEEEEEeCCcCCCCCCCCCCCcceecCCCCcCccccccccceec
Confidence            56888888654     4699999999999999999999999999755557889998 88999999 789997421    4


Q ss_pred             CccC-----CCCe----eeeceeeec-----------CCCCCCCCC-C-CCC-CCCCCCCCCCCCCccCCCCCCCCceEE
Q psy4926          86 ALKG-----RESI----NMRGKVCVR-----------CESQAMRPN-L-GYR-CPGHGTMDRSTRWSALSTPHCHGRWMR  142 (176)
Q Consensus        86 ~ws~-----g~g~----~~R~r~C~~-----------c~~~~~~~~-~-~~~-C~~~~~~~~w~~Ws~Cs~~~Cgg~~~~  142 (176)
                      +|++     |.|+    ++|.|.|..           |.+...+.+ | ..+ |++++.|..|+.|+.|+.+ ||++.+.
T Consensus       174 ~WS~CS~tCG~G~~~~~q~R~r~C~~~~~~~~~~g~~C~g~~~e~~~C~~~~~Cp~~g~W~~Ws~WS~CS~t-CG~G~q~  252 (442)
T 1w0r_A          174 PWTPCSASCHGGPHEPKETRSRKCSAPEPSQKPPGKPCPGLAYEQRRCTGLPPCPVAGGWGPWGPVSPCPVT-CGLGQTM  252 (442)
T ss_pred             ccccCCccCCCCCccCceEEEEEecCCCcCccCCCcCCCCCcceeEeecccCCcccccccccccccCCcCCc-cCCCcee
Confidence            5666     7888    999999975           333222211 3 334 9999999999999999999 9998877


Q ss_pred             eeec
Q psy4926         143 LQVE  146 (176)
Q Consensus       143 ~~~~  146 (176)
                      +.|.
T Consensus       253 R~r~  256 (442)
T 1w0r_A          253 EQRT  256 (442)
T ss_pred             eEEE
Confidence            7766

>1lsl_A Thrombospondin 1; TSP-1, TSR, cell adhesion; HET: FUL FUC; 1.90A {Homo sapiens} SCOP: g.60.1.1 g.60.1.1

Probab=99.73  E-value=2.4e-17  Score=119.06  Aligned_cols=83  Identities=27%  Similarity=0.608  Sum_probs=72.2

Q ss_pred             CCCCCCCCCCCCcCCCccCCCeEEeEEeeee-cCCCCCCCCCC-CeeeecccCCCCCCCCCCCccCCCCeeeeceeeecC
Q psy4926          26 SDCQVGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPT-LTQKRSCLGTRCPHNPRSALKGRESINMRGKVCVRC  103 (176)
Q Consensus        26 ~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~-~p~~gg~~C~~-~~e~~~C~~~~Cp~~~~~~ws~g~g~~~R~r~C~~c  103 (176)
                      +|+.|++|++|+.||++||.|+++|+|.|.+ .|..++..|.+ ..+++.|+..+                         
T Consensus         1 ~~g~ws~Ws~Ws~CS~tCG~G~~~R~R~C~~~~p~~~g~~C~g~~~e~~~C~~~~-------------------------   55 (113)
T 1lsl_A            1 QDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDA-------------------------   55 (113)
T ss_dssp             CCCCCCCCCCCCCCSCSSSEEEEEEECCSCTTCCCTTSCCCCSCSEEEEEEECCC-------------------------
T ss_pred             CcCccCCCCCCCCCcCcCCCceEEEEEEeCCCCCCCCCCcCCCCCceeeEccccc-------------------------
Confidence            4789999999999999999999999999985 56788999998 77888887643                         


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCceEEeeec
Q psy4926         104 ESQAMRPNLGYRCPGHGTMDRSTRWSALSTPHCHGRWMRLQVE  146 (176)
Q Consensus       104 ~~~~~~~~~~~~C~~~~~~~~w~~Ws~Cs~~~Cgg~~~~~~~~  146 (176)
                                  |+.++.|+.|+.|+.|+.+ ||++.+.+.|.
T Consensus        56 ------------Cp~~g~w~~Ws~Ws~Cs~t-CG~G~~~R~r~   85 (113)
T 1lsl_A           56 ------------CPINGGWGPWSPWDICSVT-CGGGVQKRSRL   85 (113)
T ss_dssp             ------------CCBCCCCCCCCCCCCCSCS-SSCEEEEEECC
T ss_pred             ------------ccccccccCcCCccCccCc-CCCCeEEEEEE
Confidence                        5666789999999999999 99988888777

>3r6b_A Thrombospondin-1; cell adhesion, disulfide bond, EGF-like domain, TSP-1 type 1; 2.40A {Homo sapiens}

Probab=99.68  E-value=1.6e-16  Score=120.83  Aligned_cols=84  Identities=26%  Similarity=0.612  Sum_probs=73.0

Q ss_pred             CCCCCCCCCCCCCcCCCccCCCeEEeEEeeee-cCCCCCCCCCC-CeeeecccCCCCCCCCCCCccCCCCeeeeceeeec
Q psy4926          25 MSDCQVGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPT-LTQKRSCLGTRCPHNPRSALKGRESINMRGKVCVR  102 (176)
Q Consensus        25 ~~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~-~p~~gg~~C~~-~~e~~~C~~~~Cp~~~~~~ws~g~g~~~R~r~C~~  102 (176)
                      ++|+.|++|++|+.||++||.|+++|.|.|.. .|..++..|.+ ..+++.|+..+                        
T Consensus         9 pvdg~Ws~Ws~Ws~CS~tCG~G~~~R~r~C~~~~p~~~g~~C~g~~~~~~~C~~~~------------------------   64 (153)
T 3r6b_A            9 LQDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDA------------------------   64 (153)
T ss_dssp             CCCCCCCCCCCCCCCSCSSSEECCEEECCSCTTCCCTTCCCCCSCSEEECCEECSC------------------------
T ss_pred             ccCCccCCCCCCCCCCCCCCCccEEEEEEeCCCCCCCccccCCCcceeeecccccc------------------------
Confidence            68999999999999999999999999999985 56788999998 77888887644                        


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCceEEeeec
Q psy4926         103 CESQAMRPNLGYRCPGHGTMDRSTRWSALSTPHCHGRWMRLQVE  146 (176)
Q Consensus       103 c~~~~~~~~~~~~C~~~~~~~~w~~Ws~Cs~~~Cgg~~~~~~~~  146 (176)
                                   |+.++.|+.|+.|+.|+.+ ||++.+.+.|.
T Consensus        65 -------------Cp~~~~w~~Ws~Ws~Cs~t-CG~G~~~R~r~   94 (153)
T 3r6b_A           65 -------------CPINGGWGPWSPWDICSVT-CGGGVQKRSRL   94 (153)
T ss_dssp             -------------CCBCCCCCCCCCCCCCSCS-SSSEEEEEECC
T ss_pred             -------------ccccCccccccccCCCCCc-CCCceEEEEEE
Confidence                         5556678999999999999 99988887776

>1vex_A F-spondin; TSR, cell adhesion; NMR {Rattus norvegicus}

Probab=99.51  E-value=2.2e-14  Score=91.14  Aligned_cols=54  Identities=30%  Similarity=0.747  Sum_probs=48.8

Q ss_pred             CCCCCCCCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCC-CeeeecccCCCCC
Q psy4926          25 MSDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPT-LTQKRSCLGTRCP   80 (176)
Q Consensus        25 ~~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~-~~e~~~C~~~~Cp   80 (176)
                      +++|.|++|++|+.||++||.|+++|+|.|.+++.  +..|.+ ..+++.|+..+||
T Consensus         2 pv~~~ws~Ws~Ws~CS~tCG~G~~~R~R~C~~~~~--~~~C~g~~~e~~~C~~~~CP   56 (56)
T 1vex_A            2 SIPCLLSPWSEWSDCSVTCGKGMRTRQRMLKSLAE--LGDCNEDLEQAEKCMLPECP   56 (56)
T ss_dssp             CCCCCBCCCCCCCCCSCSSBSCEEEEECCBCCTTC--CCCCCCCSEEEEECCBCSCC
T ss_pred             CcCCcccCCCCCCCcCccCCCCCEEEEEeccCCCC--CCCCCCCCCeEeecCCCCCc
Confidence            57999999999999999999999999999986543  678999 8899999999886

>1szl_A F-spondin; TSR, cell adhesion; NMR {Rattus norvegicus}

Probab=99.50  E-value=7.1e-15  Score=95.25  Aligned_cols=58  Identities=24%  Similarity=0.675  Sum_probs=52.1

Q ss_pred             CCCCCCCCCCCCCcCC-CccCCCeEEeEEeeeecCCCCCCCCCCCeeeecccCCCCCCCC
Q psy4926          25 MSDCQVGSWEAWSECD-TECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCPHNP   83 (176)
Q Consensus        25 ~~~c~~s~Ws~Ws~CS-~tCG~G~r~R~R~c~~~p~~gg~~C~~~~e~~~C~~~~Cp~~~   83 (176)
                      .++|.|++|++|+.|| ++||.|+++|+|.|. .|.+++..|+++.+++.|+..+||++.
T Consensus         2 ~~~C~ws~Ws~Ws~CS~~tCG~G~~~R~R~c~-~p~~gg~~C~g~~e~~~C~~~~Cp~~~   60 (61)
T 1szl_A            2 SETCIYSNWSPWSACSSSTCEKGKRMRQRMLK-AQLDLSVPCPDTQDFQPCMGPGCSDED   60 (61)
T ss_dssp             CSSEEECSCCCCCCCSCSSSSCEECCEECCEE-EESCTTSCCCTTEECCEECCTTCCSTT
T ss_pred             CccCCcCCCCCCCCCCCccCCCCeeEEEeecc-ccCCCCCCCCCccceeEeCcCCCcCCC
Confidence            3689999999999999 699999999999999 677899999994499999999998764

>1lsl_A Thrombospondin 1; TSP-1, TSR, cell adhesion; HET: FUL FUC; 1.90A {Homo sapiens} SCOP: g.60.1.1 g.60.1.1

Probab=99.43  E-value=1.2e-13  Score=99.49  Aligned_cols=71  Identities=28%  Similarity=0.609  Sum_probs=62.8

Q ss_pred             CCCCCcchhhhhccccCCC----CCCCCCCCCCcCCCccCCCeEEeEEeeee-cCCCCCCCCCC-CeeeecccCCCC
Q psy4926           9 GRDKEEEEEEEEEEREMSD----CQVGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPT-LTQKRSCLGTRC   79 (176)
Q Consensus         9 ~~~~~~g~~~e~~~C~~~~----c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~-~p~~gg~~C~~-~~e~~~C~~~~C   79 (176)
                      +...+.+...++++|+...    +.|+.|++|+.||++||.|+++|.|.|.+ .|.++|..|.+ ..+++.|+.++|
T Consensus        37 ~g~~C~g~~~e~~~C~~~~Cp~~g~w~~Ws~Ws~Cs~tCG~G~~~R~r~C~~~~p~~gg~~C~g~~~e~~~C~~~~C  113 (113)
T 1lsl_A           37 NGKPCEGEARETKACKKDACPINGGWGPWSPWDICSVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVTENQICNKQDC  113 (113)
T ss_dssp             TSCCCCSCSEEEEEEECCCCCBCCCCCCCCCCCCCSCSSSCEEEEEECCSCTTCCBTTCCCCCSCSEEEEEECCSCC
T ss_pred             CCCcCCCCCceeeEcccccccccccccCcCCccCccCcCCCCeEEEEEEeCCCCcccCCCCCCCCCceEeccCCCCC
Confidence            4567788899999999654    46999999999999999999999999995 57789999999 899999999876

>3r6b_A Thrombospondin-1; cell adhesion, disulfide bond, EGF-like domain, TSP-1 type 1; 2.40A {Homo sapiens}

Probab=99.37  E-value=6.3e-13  Score=100.84  Aligned_cols=76  Identities=29%  Similarity=0.622  Sum_probs=64.8

Q ss_pred             CCCCCCcchhhhhccccCCC----CCCCCCCCCCcCCCccCCCeEEeEEeeee-cCCCCCCCCCC-CeeeecccCCCCCC
Q psy4926           8 EGRDKEEEEEEEEEEREMSD----CQVGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPT-LTQKRSCLGTRCPH   81 (176)
Q Consensus         8 ~~~~~~~g~~~e~~~C~~~~----c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~-~p~~gg~~C~~-~~e~~~C~~~~Cp~   81 (176)
                      .+...+.+...++++|+...    +.|+.|++|+.|+++||.|+++|.|.|.+ .|.++|..|.+ ..+++.|+..+|++
T Consensus        45 ~~g~~C~g~~~~~~~C~~~~Cp~~~~w~~Ws~Ws~Cs~tCG~G~~~R~r~C~~p~p~~gg~~C~g~~~e~~~C~~~~Cp~  124 (153)
T 3r6b_A           45 MNGKPCEGEARETKACKKDACPINGGWGPWSPWDICSVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVTENQICNKQDCPL  124 (153)
T ss_dssp             TTCCCCCSCSEEECCEECSCCCBCCCCCCCCCCCCCSCSSSSEEEEEECCSCTTCCBTTCCCCCSCSEEEEEECCSCCC-
T ss_pred             CccccCCCcceeeeccccccccccCccccccccCCCCCcCCCceEEEEEEeCCCCccCCCCCCCCCCccEeeeCCCCCcC
Confidence            35567788899999999654    47999999999999999999999999985 57789999999 89999999999997


Q ss_pred             CC
Q psy4926          82 NP   83 (176)
Q Consensus        82 ~~   83 (176)
                      +.
T Consensus       125 ~~  126 (153)
T 3r6b_A          125 EP  126 (153)
T ss_dssp             --
T ss_pred             CC
Confidence            65

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=99.28  E-value=4.7e-13  Score=126.11  Aligned_cols=54  Identities=28%  Similarity=0.722  Sum_probs=45.8

Q ss_pred             CCCCCCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCC---CeeeecccCCCCC
Q psy4926          27 DCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPT---LTQKRSCLGTRCP   80 (176)
Q Consensus        27 ~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~---~~e~~~C~~~~Cp   80 (176)
                      .|.|++|++|++||++||.|+++|.|.|...+..++..|++   ..+++.|+.++||
T Consensus         2 ~C~~~~Ws~Ws~CS~tCG~G~q~R~R~c~~~~~~~~~~C~~~c~~~e~~~C~~~~Cp   58 (913)
T 3t5o_A            2 FCDHYAWTQWTSCSKTCNSGTQSRHRQIVVDKYYQENFCEQICSKQETRECNWQRCP   58 (913)
T ss_dssp             CGGGSCBCCCCCCSCSSSCEEEEEEBCCCCCHHHHHTTHHHHCCCEEEEEECCSCCC
T ss_pred             CCcCCCCCCCccccCCCCCeeEEEEEEEccCCCCCCcCCCCcCcCceeeeecccccc
Confidence            58899999999999999999999999999877778888876   4677777765443

>2bbx_A Trap, thrombospondin-related anonymous protein; elongated three-stranded structure, cell adhesion; NMR {Plasmodium falciparum}

Probab=99.27  E-value=4.7e-12  Score=78.45  Aligned_cols=47  Identities=36%  Similarity=0.936  Sum_probs=41.8

Q ss_pred             CCCCCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCCCeeeecccCCCCCC
Q psy4926          28 CQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCPH   81 (176)
Q Consensus        28 c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~~~e~~~C~~~~Cp~   81 (176)
                      ..|++|++|+.||++||.|+++|+|.|.++      .|.+. +++.|+..+||+
T Consensus         3 ~~w~~Ws~Ws~CS~tCG~G~~~R~r~C~~~------~C~g~-~~~~C~~~~Cpv   49 (49)
T 2bbx_A            3 ASCGVWDEWSPCSVTCGKGTRSRKREILHE------GCTSE-IQEQCEEERCPP   49 (49)
T ss_dssp             CCCSCCCCCCCCSSSSSSSEEEEECCCSST------TSCCE-EEEECCCCCCCC
T ss_pred             CcCCCCCCcccccCcCCCCeEEEEeeeCCC------CCCCC-eeEeeCCCCCCC
Confidence            468999999999999999999999999863      58876 899999999984

>3ghm_A A disintegrin and metalloproteinase with thrombos motifs 13; thrombospondin type-1 motif, beta sandwich, hydrolase; HET: NAG FUC BGC; 2.60A {Homo sapiens} PDB: 3ghn_A* 3vn4_A*

Probab=99.11  E-value=4.2e-11  Score=103.84  Aligned_cols=61  Identities=26%  Similarity=0.536  Sum_probs=55.3

Q ss_pred             cccCCCCCCCCCCCCCcCCCccCCCeEEeEEeeee-cCCCCCCCCCC-CeeeecccCCCCCCC
Q psy4926          22 EREMSDCQVGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPT-LTQKRSCLGTRCPHN   82 (176)
Q Consensus        22 ~C~~~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~-~p~~gg~~C~~-~~e~~~C~~~~Cp~~   82 (176)
                      +..++++.|+.|++|+.||.+||.|++.|+|.|.+ .|.+||..|.+ ..+++.|+..+|+..
T Consensus        95 p~~~vdG~Ws~Ws~WS~CS~tCG~G~~~R~R~C~~p~P~~GG~~C~G~~~~~~~Cn~~~Cp~~  157 (410)
T 3ghm_A           95 PIAAVHGRWSSWGPRSPCSRSCGGGVVTRRRQCNNPRPAFGGRACVGADLQAEMCNTQACEKT  157 (410)
T ss_dssp             SCCCBCCCCCCCCCCCCCSCSSSCEEEECCCCSCTTCCBSSCCCCCSCSCCEEEECCSCCSSC
T ss_pred             CcCcccCCCCCCCCCCcccCCCCCCcccceeccCCCCcCCCCCCCCCCCeeeEeCCCcccCcc
Confidence            34468999999999999999999999999999995 67899999999 889999999999863

>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A

Probab=98.66  E-value=2.9e-09  Score=86.93  Aligned_cols=59  Identities=27%  Similarity=0.644  Sum_probs=4.2

Q ss_pred             hhccccC--CCCCCCCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCCCeeeecccCCCCCCCCC
Q psy4926          19 EEEEREM--SDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCPHNPR   84 (176)
Q Consensus        19 e~~~C~~--~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~~~e~~~C~~~~Cp~~~~   84 (176)
                      ..+.|..  .+..|+.|++|+.||.+||.|+++|.|.|.++      .|.+. +++.|+..+||.+..
T Consensus       206 ~~~iC~~v~~~~~~~~w~~ws~Cs~~cg~g~~~r~r~c~~~------~c~~~-~~~~C~~~~Cp~~~~  266 (281)
T 4hqf_A          206 MKAVCVEVEKTASCGVWDEWSPCSVTCGKGTRSRKREILHE------GCTSE-LQEQCEEERCLPKRE  266 (281)
T ss_dssp             HHHHHHHHTC----------------------------------------------------------
T ss_pred             ccccCCCccCCCCCCCCCCCCccccccCCCcceEEEecCCC------CCCCC-eeeeeCCCCCcCCCC
Confidence            4456654  34688999999999999999999999999863      58887 889999999997653

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=98.60  E-value=8.3e-09  Score=97.29  Aligned_cols=65  Identities=25%  Similarity=0.658  Sum_probs=57.4

Q ss_pred             hhhhccccC----CCCCCCCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCC-CeeeecccC-CCCCCCC
Q psy4926          17 EEEEEEREM----SDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPT-LTQKRSCLG-TRCPHNP   83 (176)
Q Consensus        17 ~~e~~~C~~----~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~-~~e~~~C~~-~~Cp~~~   83 (176)
                      ..|+++|+.    ++|.|+.|++|+.|+. |+ |.+.|.|.|..++..||..|++ +.+++.|+. .+||...
T Consensus        46 ~~e~~~C~~~~Cp~~c~w~~Ws~Ws~Cs~-C~-g~~~R~R~~~~~~~~gg~~C~g~~~e~~~C~~~~~Cp~~~  116 (913)
T 3t5o_A           46 KQETRECNWQRCPINCLLGDFGPWSDCDP-CI-EKQSKVRSVLRPSQFGGQPCTAPLVAFQPCIPSKLCKIEE  116 (913)
T ss_dssp             CEEEEEECCSCCCBCCEECCCCCCCCCCS-SS-CEECCBCCEEECEETTCCCCCSCSBCCEECCCSSSSCCCC
T ss_pred             CceeeeeccccccccccccccCCccCCCC-cc-cccceeeEeccCccCCCCCCCCCcccccccCCccCCCccc
Confidence            678889984    5667999999999999 97 9999999999888999999998 889999998 8898654

>3vdj_A Circumsporozoite (CS) protein; TSR, ATSR, cell invasion; 1.70A {Plasmodium falciparum} PDB: 3vdk_A 3vdl_A

Probab=98.43  E-value=3.2e-08  Score=66.21  Aligned_cols=50  Identities=30%  Similarity=0.637  Sum_probs=37.5

Q ss_pred             CCCCCCcCCCccCCCeEEeEEeeee-cCCCCCCCCCCCeeeecccCCCCCCC
Q psy4926          32 SWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPTLTQKRSCLGTRCPHN   82 (176)
Q Consensus        32 ~Ws~Ws~CS~tCG~G~r~R~R~c~~-~p~~gg~~C~~~~e~~~C~~~~Cp~~   82 (176)
                      -|++|+.||.|||.|++.|.|.|.+ .|.+++.++. ..+++.|.+..||..
T Consensus        22 vtS~WS~CSvTCG~Gvq~R~R~C~nP~P~~~~~~~~-d~E~e~~~~~~~~~~   72 (77)
T 3vdj_A           22 LSTEWSPCSVTCGNGIQVRIKPGSANKPKDELDYAN-DIEKKICKMEKCPHH   72 (77)
T ss_dssp             CSSSCCCCSCSSSEEEEEEECGGGTTSCGGGCCHHH-HEEEEEEECSCCCC-
T ss_pred             ccccCCCCCCcCCCCeEEeeecCCCCCCcccCccCc-chhhhhcccccCCcc
Confidence            4689999999999999999999995 4444332122 468888888888753

>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.33  E-value=4.1e-07  Score=81.30  Aligned_cols=57  Identities=25%  Similarity=0.597  Sum_probs=49.2

Q ss_pred             cccCCCCCCCCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCC-CeeeecccC-CCCCC
Q psy4926          22 EREMSDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPT-LTQKRSCLG-TRCPH   81 (176)
Q Consensus        22 ~C~~~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~-~~e~~~C~~-~~Cp~   81 (176)
                      +| ++||.|++|++|++|+ +|+ +.++|.|.+..+++.||..|++ +.+++.|.. .+|+.
T Consensus         6 ~~-pv~C~~s~ws~Ws~C~-~C~-~~~~R~R~v~~p~q~gG~~C~~~l~d~~~C~~~~~C~~   64 (537)
T 3ojy_B            6 LM-PIDCELSSWSSWTTCD-PCQ-KKRYRYAYLLQPSQFHGEPCNFSDKEVEDCVTNRPCRS   64 (537)
T ss_dssp             -C-CBCCEECCCCCCCCCB-TTT-TEEEEECCEEECEETTCCCCCSCSEEEEECCCCCCCCC
T ss_pred             CC-CcccccCCCCCCCCCC-CCC-CceEeeeeeccccccCCCcCccchhhhccCCCcccccc
Confidence            44 6899999999999999 598 6799999999999999999998 789999965 56743

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.19  E-value=1.5e-06  Score=77.99  Aligned_cols=55  Identities=31%  Similarity=0.745  Sum_probs=47.5

Q ss_pred             CCCCCCCCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCC-CeeeecccC-CCCCC
Q psy4926          25 MSDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPT-LTQKRSCLG-TRCPH   81 (176)
Q Consensus        25 ~~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~-~~e~~~C~~-~~Cp~   81 (176)
                      ++||.|++|++|++|+ +|+ +.++|.|....+++.||.+|++ +.+++.|.. ..|+.
T Consensus         6 pv~C~~s~ws~Ws~C~-~C~-~~~~R~R~v~~p~q~gG~~C~~~l~d~~~C~~~~~c~~   62 (554)
T 3ojy_A            6 AVTCQLSNWSEWTDCF-PCQ-DKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVR   62 (554)
T ss_dssp             CCCCEECCCCCCCCCC-TTT-CEEEEECCEEECBCSSCCCCCSCSEEEEECCCCCCC--
T ss_pred             CccCcCCCCCCCCCCC-CCC-CccEeeEeeccccccCCCCCCCccccccCCCCCCCCcc
Confidence            6999999999999998 697 5699999999999999999998 789999976 45753

>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.15  E-value=6.9e-07  Score=79.83  Aligned_cols=47  Identities=28%  Similarity=0.645  Sum_probs=37.0

Q ss_pred             CCCCCCCCCCCCCcCCCccCCCeEEeEEeeee-cCCCCCCCCCC-Ceeeeccc
Q psy4926          25 MSDCQVGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPT-LTQKRSCL   75 (176)
Q Consensus        25 ~~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~-~p~~gg~~C~~-~~e~~~C~   75 (176)
                      ++|+.|+.|++|+.|+    .|++.|+|.|.+ .|.+||..|.| ..+++.|+
T Consensus       489 pv~G~Ws~Ws~Ws~Cs----~G~~~R~R~C~~p~P~~gG~~C~G~~~~~~~C~  537 (537)
T 3ojy_B          489 PIDGKWNCWSNWSSCS----GRRKTRQRQCNNPPPQNGGSPCSGPASETLDCS  537 (537)
T ss_dssp             CCCCCCCCCCCCCCSS----SEEEECCTTTTCCSSCC-----CCCSEEEECC-
T ss_pred             ccCCCCCCCCCCCCcC----CCceecccccCCCCCCCCCCcCCCCCcceecCc
Confidence            6899999999999998    689999999995 68899999999 78888884

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.08  E-value=1.5e-06  Score=77.96  Aligned_cols=48  Identities=33%  Similarity=0.763  Sum_probs=32.5

Q ss_pred             cccCCCCCCCCCCCCCcCCCccCCCeEEeEEeeee-cCCCCCCCCCC-Ceeeecc
Q psy4926          22 EREMSDCQVGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPT-LTQKRSC   74 (176)
Q Consensus        22 ~C~~~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~-~p~~gg~~C~~-~~e~~~C   74 (176)
                      +| ++|+.|+.|++|+.||    .|++.|+|.|.+ .|.+||..|.| ..+++.|
T Consensus       505 ~~-pvdG~Ws~Ws~Ws~Cs----~G~~~R~R~C~~P~P~~gG~~C~G~~~e~~~C  554 (554)
T 3ojy_A          505 GA-KADGSWSCWSSWSVCR----AGIQERRRECDNPAPQNGGASCPGRKVQTQAC  554 (554)
T ss_dssp             -C-CCCCCCCCCCCCBCCS----SSCCEEECCC----------CCCSCSEEEC--
T ss_pred             CC-CCCCCcccCCCCCCCC----CCCceeeeecCCCCCCCCCCCCCCCCcccCCC
Confidence            44 5899999999999998    589999999995 58999999999 7787766

>1vex_A F-spondin; TSR, cell adhesion; NMR {Rattus norvegicus}

Probab=97.52  E-value=8.9e-05  Score=46.12  Aligned_cols=29  Identities=17%  Similarity=0.129  Sum_probs=25.7

Q ss_pred             CCCCCCCCCCCCccCCCCCCCCceEEeeec
Q psy4926         117 PGHGTMDRSTRWSALSTPHCHGRWMRLQVE  146 (176)
Q Consensus       117 ~~~~~~~~w~~Ws~Cs~~~Cgg~~~~~~~~  146 (176)
                      ++++.|++|+.|+.|+.+ ||++.+.+.|.
T Consensus         2 pv~~~ws~Ws~Ws~CS~t-CG~G~~~R~R~   30 (56)
T 1vex_A            2 SIPCLLSPWSEWSDCSVT-CGKGMRTRQRM   30 (56)
T ss_dssp             CCCCCBCCCCCCCCCSCS-SBSCEEEEECC
T ss_pred             CcCCcccCCCCCCCcCcc-CCCCCEEEEEe
Confidence            467889999999999999 99988888777

>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*

Probab=97.42  E-value=6.3e-05  Score=60.73  Aligned_cols=55  Identities=31%  Similarity=0.799  Sum_probs=39.5

Q ss_pred             hccccC--CCCCCCCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCCCeeeecccCCCCCC
Q psy4926          20 EEEREM--SDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCPH   81 (176)
Q Consensus        20 ~~~C~~--~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~~~e~~~C~~~~Cp~   81 (176)
                      .+.|..  .+..|++|++|+.|+.+||.|++.|+|.|.++      .|.+ ..+..|....||.
T Consensus       204 ~~iC~~~~~~a~~~~w~~~s~c~~~cg~g~~~r~r~~~~~------~~~~-~~~~~~~~~~~~~  260 (266)
T 4hqo_A          204 AKVCTEVERVANCGPWDPWTACSVTCGRGTHSRSRPSLHE------KCTT-HMVSECEEGECPH  260 (266)
T ss_dssp             CCCEEEEEEEEECCCCCCCCCCSSSSEEEEEEEECCCSST------TCCC-EEEEEEEESCCCC
T ss_pred             hhhcccccccccccCcCCCCccccccCCCceeeeEeeCCC------CCCC-CcCcccccCCCCc
Confidence            344543  34589999999999999999999999999854      3553 2334555555654

>2bbx_A Trap, thrombospondin-related anonymous protein; elongated three-stranded structure, cell adhesion; NMR {Plasmodium falciparum}

Probab=97.14  E-value=0.00043  Score=42.11  Aligned_cols=28  Identities=18%  Similarity=0.184  Sum_probs=24.0

Q ss_pred             CCCCCCCCCCccCCCCCCCCceEEeeecc
Q psy4926         119 HGTMDRSTRWSALSTPHCHGRWMRLQVES  147 (176)
Q Consensus       119 ~~~~~~w~~Ws~Cs~~~Cgg~~~~~~~~~  147 (176)
                      ...|+.|+.|+.|+.+ ||++.+.+.|.-
T Consensus         2 ~~~w~~Ws~Ws~CS~t-CG~G~~~R~r~C   29 (49)
T 2bbx_A            2 SASCGVWDEWSPCSVT-CGKGTRSRKREI   29 (49)
T ss_dssp             CCCCSCCCCCCCCSSS-SSSSEEEEECCC
T ss_pred             CCcCCCCCCcccccCc-CCCCeEEEEeee
Confidence            3568999999999999 999988887773

>1szl_A F-spondin; TSR, cell adhesion; NMR {Rattus norvegicus}

Probab=96.50  E-value=0.00078  Score=42.65  Aligned_cols=27  Identities=22%  Similarity=0.193  Sum_probs=22.7

Q ss_pred             CCCCCCCCCCccCC-CCCCCCceEEeeec
Q psy4926         119 HGTMDRSTRWSALS-TPHCHGRWMRLQVE  146 (176)
Q Consensus       119 ~~~~~~w~~Ws~Cs-~~~Cgg~~~~~~~~  146 (176)
                      ++.|++|+.|+.|+ .+ |+++.+.+.|.
T Consensus         4 ~C~ws~Ws~Ws~CS~~t-CG~G~~~R~R~   31 (61)
T 1szl_A            4 TCIYSNWSPWSACSSST-CEKGKRMRQRM   31 (61)
T ss_dssp             SEEECSCCCCCCCSCSS-SSCEECCEECC
T ss_pred             cCCcCCCCCCCCCCCcc-CCCCeeEEEee
Confidence            55789999999999 69 99887777665

>3ghm_A A disintegrin and metalloproteinase with thrombos motifs 13; thrombospondin type-1 motif, beta sandwich, hydrolase; HET: NAG FUC BGC; 2.60A {Homo sapiens} PDB: 3ghn_A* 3vn4_A*

Probab=95.36  E-value=0.014  Score=50.44  Aligned_cols=34  Identities=21%  Similarity=0.220  Sum_probs=28.6

Q ss_pred             CCCCCCCCCCCCCccCCCCCCCCceEEeeec-cccC
Q psy4926         116 CPGHGTMDRSTRWSALSTPHCHGRWMRLQVE-SALR  150 (176)
Q Consensus       116 C~~~~~~~~w~~Ws~Cs~~~Cgg~~~~~~~~-~~~~  150 (176)
                      .++++.|+.|+.|+.|+.+ ||++.+.+.|. .++.
T Consensus        97 ~~vdG~Ws~Ws~WS~CS~t-CG~G~~~R~R~C~~p~  131 (410)
T 3ghm_A           97 AAVHGRWSSWGPRSPCSRS-CGGGVVTRRRQCNNPR  131 (410)
T ss_dssp             CCBCCCCCCCCCCCCCSCS-SSCEEEECCCCSCTTC
T ss_pred             CcccCCCCCCCCCCcccCC-CCCCcccceeccCCCC
Confidence            3578999999999999999 99998888777 5533

>3vdj_A Circumsporozoite (CS) protein; TSR, ATSR, cell invasion; 1.70A {Plasmodium falciparum} PDB: 3vdk_A 3vdl_A

Probab=94.99  E-value=0.011  Score=39.39  Aligned_cols=25  Identities=24%  Similarity=0.279  Sum_probs=21.6

Q ss_pred             CCCCCCccCCCCCCCCceEEeeeccc
Q psy4926         123 DRSTRWSALSTPHCHGRWMRLQVESA  148 (176)
Q Consensus       123 ~~w~~Ws~Cs~~~Cgg~~~~~~~~~~  148 (176)
                      ..++.|+.||.+ ||++.+.+.|..+
T Consensus        21 ~vtS~WS~CSvT-CG~Gvq~R~R~C~   45 (77)
T 3vdj_A           21 SLSTEWSPCSVT-CGNGIQVRIKPGS   45 (77)
T ss_dssp             TCSSSCCCCSCS-SSEEEEEEECGGG
T ss_pred             cccccCCCCCCc-CCCCeEEeeecCC
Confidence            457899999999 9999999988844

>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A

Probab=92.42  E-value=0.024  Score=45.58  Aligned_cols=27  Identities=19%  Similarity=0.212  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCccCCCCCCCCceEEeeec
Q psy4926         119 HGTMDRSTRWSALSTPHCHGRWMRLQVE  146 (176)
Q Consensus       119 ~~~~~~w~~Ws~Cs~~~Cgg~~~~~~~~  146 (176)
                      ...|+.|+.|+.||.+ ||++.+.+.|.
T Consensus       216 ~~~~~~w~~ws~Cs~~-cg~g~~~r~r~  242 (281)
T 4hqf_A          216 TASCGVWDEWSPCSVT-CGKGTRSRKRE  242 (281)
T ss_dssp             ----------------------------
T ss_pred             CCCCCCCCCCCccccc-cCCCcceEEEe
Confidence            3568899999999999 99998888766

>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*

Probab=86.31  E-value=0.31  Score=38.69  Aligned_cols=27  Identities=15%  Similarity=0.133  Sum_probs=23.4

Q ss_pred             CCCCCCCCCCccCCCCCCCCceEEeeec
Q psy4926         119 HGTMDRSTRWSALSTPHCHGRWMRLQVE  146 (176)
Q Consensus       119 ~~~~~~w~~Ws~Cs~~~Cgg~~~~~~~~  146 (176)
                      ...|+.|+.|+.|+.+ ||++...+.|.
T Consensus       213 ~a~~~~w~~~s~c~~~-cg~g~~~r~r~  239 (266)
T 4hqo_A          213 VANCGPWDPWTACSVT-CGRGTHSRSRP  239 (266)
T ss_dssp             EEECCCCCCCCCCSSS-SEEEEEEEECC
T ss_pred             cccccCcCCCCccccc-cCCCceeeeEe
Confidence            4578999999999999 99888777776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	176
d1lsla2	59	g.60.1.1 (A:470-528) Thrombospondin-1 (TSP-1) {Hum	8e-09
d1lsla1	54	g.60.1.1 (A:416-469) Thrombospondin-1 (TSP-1) {Hum	3e-07
d1vmoa_	163	b.77.1.1 (A:) Vitelline membrane outer protein-I (	0.001

>d1lsla2 g.60.1.1 (A:470-528) Thrombospondin-1 (TSP-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: Small proteins
fold: TSP-1 type 1 repeat
superfamily: TSP-1 type 1 repeat
family: TSP-1 type 1 repeat
domain: Thrombospondin-1 (TSP-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (113), Expect = 8e-09
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 27 DCQVGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCP-TLTQKRSCLGTRC 79
          +   G W  W  C   CG G   R+R      P+ GGK C   +T+ + C    C
Sbjct: 5  NGGWGPWSPWDICSVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVTENQICNKQDC 59

>d1lsla1 g.60.1.1 (A:416-469) Thrombospondin-1 (TSP-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 54

class: Small proteins
fold: TSP-1 type 1 repeat
superfamily: TSP-1 type 1 repeat
family: TSP-1 type 1 repeat
domain: Thrombospondin-1 (TSP-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (101), Expect = 3e-07
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 27 DCQVGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCP-TLTQKRSC 74
          D     W  WS C   CG G + R R      P+  GK C     + ++C
Sbjct: 2  DGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKAC 51

>d1vmoa_ b.77.1.1 (A:) Vitelline membrane outer protein-I (VMO-I) {Hen (Gallus gallus) [TaxId: 9031]} Length = 163

class: All beta proteins
fold: beta-Prism I
superfamily: Vitelline membrane outer protein-I (VMO-I)
family: Vitelline membrane outer protein-I (VMO-I)
domain: Vitelline membrane outer protein-I (VMO-I)
species: Hen (Gallus gallus) [TaxId: 9031]

 Score = 35.6 bits (81), Expect = 0.001
 Identities = 9/115 (7%), Positives = 21/115 (18%), Gaps = 4/115 (3%)

Query: 26  SDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCPHNPRS 85
           +    G W     C +    G  ++   +     +   +   L             +   
Sbjct: 13  NGGHWGKWGIRQFCHSGYANGFALKVEPSQFGRDDTALNGIRLRCLDGS----VIESLVG 68

Query: 86  ALKGRESINMRGKVCVRCESQAMRPNLGYRCPGHGTMDRSTRWSALSTPHCHGRW 140
                 S  +     +   S     + G          +               W
Sbjct: 69  KWGTWTSFLVCPTGYLVSFSLRSEKSQGGGDDTAANNIQFRCSDEAVLVGDGLSW 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	176
d1lsla2	59	Thrombospondin-1 (TSP-1) {Human (Homo sapiens) [Ta	99.63
d1lsla1	54	Thrombospondin-1 (TSP-1) {Human (Homo sapiens) [Ta	99.5
d1vmoa_	163	Vitelline membrane outer protein-I (VMO-I) {Hen (G	99.36
d1vmoa_	163	Vitelline membrane outer protein-I (VMO-I) {Hen (G	98.25
d1lsla2	59	Thrombospondin-1 (TSP-1) {Human (Homo sapiens) [Ta	98.21
d1lsla1	54	Thrombospondin-1 (TSP-1) {Human (Homo sapiens) [Ta	97.68

>d1lsla2 g.60.1.1 (A:470-528) Thrombospondin-1 (TSP-1) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: TSP-1 type 1 repeat
superfamily: TSP-1 type 1 repeat
family: TSP-1 type 1 repeat
domain: Thrombospondin-1 (TSP-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.6e-16  Score=101.12  Aligned_cols=55  Identities=31%  Similarity=0.739  Sum_probs=51.5

Q ss_pred             CCCCCCCCCCCCCcCCCccCCCeEEeEEeeee-cCCCCCCCCCC-CeeeecccCCCC
Q psy4926          25 MSDCQVGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPT-LTQKRSCLGTRC   79 (176)
Q Consensus        25 ~~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~-~p~~gg~~C~~-~~e~~~C~~~~C   79 (176)
                      ++||.|++|++|+.||++||.|+++|+|.|.+ .|.++|+.|++ ..|++.|+.++|
T Consensus         3 Pvdg~ws~Ws~Ws~CS~tCG~G~~~R~R~c~~p~p~~gg~~C~G~~~e~~~C~~~~C   59 (59)
T d1lsla2           3 PINGGWGPWSPWDICSVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVTENQICNKQDC   59 (59)
T ss_dssp             CBCCCCCCCCCCCCCSCSSSCEEEEEECCSCTTCCBTTCCCCCSCSEEEEEECCSCC
T ss_pred             CcCCCcCCCCCCCCCcCcCCCCcEEEEEEeCCCCcccCCCCCCCCCeEEeEeCCCcC
Confidence            48999999999999999999999999999996 67899999998 899999999887

>d1lsla1 g.60.1.1 (A:416-469) Thrombospondin-1 (TSP-1) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: TSP-1 type 1 repeat
superfamily: TSP-1 type 1 repeat
family: TSP-1 type 1 repeat
domain: Thrombospondin-1 (TSP-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=8.3e-15  Score=91.35  Aligned_cols=51  Identities=29%  Similarity=0.735  Sum_probs=47.3

Q ss_pred             CCCCCCCCCCCCcCCCccCCCeEEeEEeeee-cCCCCCCCCCC-CeeeecccC
Q psy4926          26 SDCQVGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPT-LTQKRSCLG   76 (176)
Q Consensus        26 ~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~-~p~~gg~~C~~-~~e~~~C~~   76 (176)
                      +|+.|++|++|+.||++||.|++.|+|.|.+ .|.++|+.|++ ..+++.|+.
T Consensus         1 ~dG~Ws~Ws~Ws~Cs~sCg~G~~~R~R~C~~p~p~~gg~~C~G~~~e~~~Cn~   53 (54)
T d1lsla1           1 QDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKK   53 (54)
T ss_dssp             CCCCCCCCCCCCCCSCSSSEEEEEEECCSCTTCCCTTSCCCCSCSEEEEEEEC
T ss_pred             CcCcCCCCCCccCccCccCCCceEEEEEeCCCCccCCCCCCcCCCCEeeeCCC
Confidence            4889999999999999999999999999985 67899999998 899999986

>d1vmoa_ b.77.1.1 (A:) Vitelline membrane outer protein-I (VMO-I) {Hen (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: beta-Prism I
superfamily: Vitelline membrane outer protein-I (VMO-I)
family: Vitelline membrane outer protein-I (VMO-I)
domain: Vitelline membrane outer protein-I (VMO-I)
species: Hen (Gallus gallus) [TaxId: 9031]

Probab=99.36  E-value=3.5e-14  Score=106.62  Aligned_cols=108  Identities=12%  Similarity=0.085  Sum_probs=71.5

Q ss_pred             CCCCCCCCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCC-CeeeecccCCCC-----CCCCC-CCccC-----CCC
Q psy4926          25 MSDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPT-LTQKRSCLGTRC-----PHNPR-SALKG-----RES   92 (176)
Q Consensus        25 ~~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~-~~e~~~C~~~~C-----p~~~~-~~ws~-----g~g   92 (176)
                      +.++.|++|++|+.||++||.|+++|.|.|.     ++..|.+ ..+...|....|     +.+.. ++|+.     +.|
T Consensus        12 p~~G~Wg~Ws~Ws~CS~tCg~G~~~R~R~c~-----~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~Ws~ws~Cs~tcg~G   86 (163)
T d1vmoa_          12 PNGGHWGKWGIRQFCHSGYANGFALKVEPSQ-----FGRDDTALNGIRLRCLDGSVIESLVGKWGTWTSFLVCPTGYLVS   86 (163)
T ss_dssp             SSSCCCSEECCCEECSSSCEEEEEEEECCSC-----SSSCCCCCCEEEEEETTSCEECCSCCSSSEECCCEECSSSCEEE
T ss_pred             CCCCcCCCCCCCCCCCCcCCCCeEEeeccCC-----CCCCccCccccccccccCCcccCCCCCCCcccccccCCCCccCc
Confidence            5789999999999999999999999999874     3444555 344445555443     22211 33443     677


Q ss_pred             eeeeceeeec---CCCCCCCCC--CCCCCCC--CCCCCCCCCCccCCCCCCCC
Q psy4926          93 INMRGKVCVR---CESQAMRPN--LGYRCPG--HGTMDRSTRWSALSTPHCHG  138 (176)
Q Consensus        93 ~~~R~r~C~~---c~~~~~~~~--~~~~C~~--~~~~~~w~~Ws~Cs~~~Cgg  138 (176)
                      +++|.+.|..   |.+......  ....|..  ...|++|+.|+.|+.+ ||.
T Consensus        87 ~~~R~r~~~~~~~~~g~~~~~~~C~~~~c~~~~~~~W~~Ws~ws~cs~~-CG~  138 (163)
T d1vmoa_          87 FSLRSEKSQGGGDDTAANNIQFRCSDEAVLVGDGLSWGRFGPWSKRCKI-CGL  138 (163)
T ss_dssp             EEEEECCCCSSCCCCCCCEEEEEETTSCEEECSCCCCSEECCCCCCCCE-EEE
T ss_pred             eeeeecCCCCCCCCCCcceeeeccCCCCCCCCCCCcccCccccCCCccc-cCC
Confidence            8888887754   333222211  1334433  4568999999999999 973

>d1vmoa_ b.77.1.1 (A:) Vitelline membrane outer protein-I (VMO-I) {Hen (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: beta-Prism I
superfamily: Vitelline membrane outer protein-I (VMO-I)
family: Vitelline membrane outer protein-I (VMO-I)
domain: Vitelline membrane outer protein-I (VMO-I)
species: Hen (Gallus gallus) [TaxId: 9031]

Probab=98.25  E-value=2e-07  Score=68.80  Aligned_cols=53  Identities=17%  Similarity=0.241  Sum_probs=43.5

Q ss_pred             CCCCCCCCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCC-CeeeecccCCCCCCC
Q psy4926          25 MSDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPT-LTQKRSCLGTRCPHN   82 (176)
Q Consensus        25 ~~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~-~~e~~~C~~~~Cp~~   82 (176)
                      +.++.|+.|++|+.|+.+|+.|++.|.|.+     .++..|.+ ..+.+.|+..+|+..
T Consensus        65 ~~~~~w~~Ws~ws~Cs~tcg~G~~~R~r~~-----~~~~~~~g~~~~~~~C~~~~c~~~  118 (163)
T d1vmoa_          65 SLVGKWGTWTSFLVCPTGYLVSFSLRSEKS-----QGGGDDTAANNIQFRCSDEAVLVG  118 (163)
T ss_dssp             CSCCSSSEECCCEECSSSCEEEEEEEECCC-----CSSCCCCCCCEEEEEETTSCEEEC
T ss_pred             CCCCCCCcccccccCCCCccCceeeeecCC-----CCCCCCCCcceeeeccCCCCCCCC
Confidence            356689999999999999999999999865     34456777 788999999888754

>d1lsla2 g.60.1.1 (A:470-528) Thrombospondin-1 (TSP-1) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: TSP-1 type 1 repeat
superfamily: TSP-1 type 1 repeat
family: TSP-1 type 1 repeat
domain: Thrombospondin-1 (TSP-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.5e-06  Score=53.86  Aligned_cols=33  Identities=21%  Similarity=0.400  Sum_probs=29.9

Q ss_pred             CCCCCCCCCCCCCCccCCCCCCCCceEEeeec-cc
Q psy4926         115 RCPGHGTMDRSTRWSALSTPHCHGRWMRLQVE-SA  148 (176)
Q Consensus       115 ~C~~~~~~~~w~~Ws~Cs~~~Cgg~~~~~~~~-~~  148 (176)
                      .||+++.|++|+.|+.|+.+ ||++.+.++|. .+
T Consensus         1 aCPvdg~ws~Ws~Ws~CS~t-CG~G~~~R~R~c~~   34 (59)
T d1lsla2           1 ACPINGGWGPWSPWDICSVT-CGGGVQKRSRLCNN   34 (59)
T ss_dssp             CCCBCCCCCCCCCCCCCSCS-SSCEEEEEECCSCT
T ss_pred             CcCcCCCcCCCCCCCCCcCc-CCCCcEEEEEEeCC
Confidence            49999999999999999999 99999888887 44

>d1lsla1 g.60.1.1 (A:416-469) Thrombospondin-1 (TSP-1) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: TSP-1 type 1 repeat
superfamily: TSP-1 type 1 repeat
family: TSP-1 type 1 repeat
domain: Thrombospondin-1 (TSP-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=3e-05  Score=46.92  Aligned_cols=29  Identities=17%  Similarity=0.273  Sum_probs=26.0

Q ss_pred             CCCCCCCCCCccCCCCCCCCceEEeeec-cc
Q psy4926         119 HGTMDRSTRWSALSTPHCHGRWMRLQVE-SA  148 (176)
Q Consensus       119 ~~~~~~w~~Ws~Cs~~~Cgg~~~~~~~~-~~  148 (176)
                      ++.|++|+.|+.|+.+ |+++.+.+.|. ++
T Consensus         2 dG~Ws~Ws~Ws~Cs~s-Cg~G~~~R~R~C~~   31 (54)
T d1lsla1           2 DGGWSHWSPWSSCSVT-CGDGVITRIRLCNS   31 (54)
T ss_dssp             CCCCCCCCCCCCCSCS-SSEEEEEEECCSCT
T ss_pred             cCcCCCCCCccCccCc-cCCCceEEEEEeCC
Confidence            5789999999999999 99999888887 55