Psyllid ID: psy4931

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
Protein Sequence
MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEAIKAKKKRMVEAGIVEEIHESENEAEENMEVDTHWETNEDKLTYIKI
Secondary Structure (PSIPRED)
ccEEEEccccccccccccEEEEEEcccEEEEEcHHHHHHHHcccccccccHHHHHHHHHccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccccccccEEEEEccHHEHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccEEcccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEcccccccccccEEEEc
Coil and Loop (DISEMBL)
mrietcyfcsskiypghgiqfvrnDCKIFRFCRSKCHklfkrkknprktaWTKAYRKVrgkdlavdpsfefakrrnvplkydrEFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEAIKAKKKRMVEAGIVEEIHeseneaeenmevdthwetnedkltyiki
Flexible Loop (DISEMBL)
MRIETCYFcsskiypghgiQFVRNDCKIFRFCRSKchklfkrkknprktawtkayrkvrgkdlavdpsfefakrrnvplkydrefwNKTVEAIKkvehiktkrqnlylaqrlrkarevetardikavqrdiailndpteaikaKKKRMVEAGIVeeiheseneaeenmevdthwetnedkltyiki
Low Complexity Region (SEG)
MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEAIKAKKKRMVEAGIVeeiheseneaeenmeVDTHWETNEDKLTYIKI
Disordered region (IsUnstruct)
**IETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVETARDIKAVQRDIAILNDP*************************************************
Disordered Region (DISOPRED)
MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGK**************NVPLKYDREFWNKTVEAIKKVEHI************************************************************************************I**
Disordered Region (DISEMBL)
MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEAIKAKKKRMVEAGIVEEIHES*********VDTHWETNEDKLTYIKI
Disordered Region (DISPRO)
*RIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEAIKAKKKRMVE*G****************EVDTHWET*EDKLTYIKI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEAIKAKKKRMVEAGIVEEIHESENEAEENMEVDTHWETNEDKLTYIKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	186	2.2.26 [Sep-21-2011]
Q9VGN9	191	Probable ribosome biogene	yes	N/A	0.779	0.759	0.648	7e-56
Q99L28	163	Probable ribosome biogene	yes	N/A	0.833	0.950	0.566	7e-50
Q9UHA3	163	Probable ribosome biogene	yes	N/A	0.838	0.957	0.562	7e-50
Q7ZTZ2	161	Probable ribosome biogene	yes	N/A	0.833	0.962	0.572	1e-49
Q5RF04	163	Probable ribosome biogene	yes	N/A	0.838	0.957	0.556	2e-49
Q3SZ12	163	Probable ribosome biogene	yes	N/A	0.838	0.957	0.556	2e-49
Q6P6G7	163	Probable ribosome biogene	yes	N/A	0.838	0.957	0.55	3e-49
Q86B05	164	Probable ribosome biogene	yes	N/A	0.881	1.0	0.445	4e-41
O22165	159	Probable ribosome biogene	yes	N/A	0.736	0.861	0.532	1e-38
Q759D1	197	Ribosome biogenesis prote	yes	N/A	0.720	0.680	0.529	2e-38

>sp|Q9VGN9|RLP24_DROME Probable ribosome biogenesis protein RLP24 OS=Drosophila melanogaster GN=RpL24-like PE=1 SV=1

 Score =  216 bits (550), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 94/145 (64%), Positives = 117/145 (80%)

Query: 1   MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
           MRI+TCYFCSSKIYPGHG+QFVRNDCK+F+FCR KCHK FKRKKNPRK  WTKAYRK  G
Sbjct: 1   MRIQTCYFCSSKIYPGHGVQFVRNDCKVFKFCRGKCHKAFKRKKNPRKVGWTKAYRKAAG 60

Query: 61  KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
           K+LA+DPSFEF KRRNVP+KY RE W K +EAIK+V  IK KR + ++ +RLRK R+VE 
Sbjct: 61  KELAIDPSFEFEKRRNVPMKYSRETWQKGLEAIKRVTEIKEKRTSHFVMERLRKGRQVEI 120

Query: 121 ARDIKAVQRDIAILNDPTEAIKAKK 145
             D+K VQR+++++  P   +K ++
Sbjct: 121 QMDVKDVQRNMSLIRSPAAGLKQRR 145

Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of NOG1 to pre-60S particles.
Drosophila melanogaster (taxid: 7227)

>sp|Q99L28|RLP24_MOUSE Probable ribosome biogenesis protein RLP24 OS=Mus musculus GN=Rsl24d1 PE=2 SV=1

 Score =  196 bits (498), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 90/159 (56%), Positives = 120/159 (75%), Gaps = 4/159 (2%)

Query: 1   MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
           MRIE CYFCS  IYPGHG+ FVRNDCK+FRFC+SKCHK FK+K+NPRK  WTKA+RK  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
           K+L VD SFEF KRRN P+KY RE WNKT++A+K+VE IK KRQ  ++  RL+K +E++ 
Sbjct: 61  KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 120

Query: 121 ARDIKAVQRDIAILNDPTEAIKAKKKRMVEAGIVEEIHE 159
            +DIK V+++I ++  P     A K + +E  +V+++ E
Sbjct: 121 VQDIKEVKQNIHLIRAPL----AGKGKQLEEKMVQQLQE 155

Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of GTPBP4/NOG1 to pre-60S particles.

Mus musculus (taxid: 10090)

>sp|Q9UHA3|RLP24_HUMAN Probable ribosome biogenesis protein RLP24 OS=Homo sapiens GN=RSL24D1 PE=1 SV=1

 Score =  196 bits (498), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 90/160 (56%), Positives = 120/160 (75%), Gaps = 4/160 (2%)

Query: 1   MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
           MRIE CYFCS  IYPGHG+ FVRNDCK+FRFC+SKCHK FK+K+NPRK  WTKA+RK  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
           K+L VD SFEF KRRN P+KY RE WNKT++A+K+VE IK KRQ  ++  RL+K +E++ 
Sbjct: 61  KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 120

Query: 121 ARDIKAVQRDIAILNDPTEAIKAKKKRMVEAGIVEEIHES 160
            +DIK V+++I ++  P     A K + +E  +V+++ E 
Sbjct: 121 VQDIKEVKQNIHLIRAPL----AGKGKQLEEKMVQQLQED 156

Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of GTPBP4/NOG1 to pre-60S particles.

Homo sapiens (taxid: 9606)

>sp|Q7ZTZ2|RLP24_DANRE Probable ribosome biogenesis protein RLP24 OS=Danio rerio GN=rsl24d1 PE=2 SV=1

 Score =  196 bits (497), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 91/159 (57%), Positives = 121/159 (76%), Gaps = 4/159 (2%)

Query: 1   MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
           MRIE CYFCS+ +YPGHG+ FVRNDCK+FRFCRSKCHK FK+K+NPRKT WTKA+RK  G
Sbjct: 1   MRIEKCYFCSAPVYPGHGMMFVRNDCKVFRFCRSKCHKNFKKKRNPRKTRWTKAFRKSAG 60

Query: 61  KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
           K+L VD S EF KRRN P+KY+RE W+KTVEA++KVE IK KRQ  ++  RL+K +E+E 
Sbjct: 61  KELTVDNSLEFEKRRNTPVKYNRELWSKTVEAMRKVESIKHKRQARFIMNRLKKGKELEK 120

Query: 121 ARDIKAVQRDIAILNDPTEAIKAKKKRMVEAGIVEEIHE 159
           A DI  V+++I ++  P     A + + +E  +V+++ E
Sbjct: 121 AADISEVKKNIHLIKAPH----AGQAKQLEDKMVQKLAE 155

Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of GTPBP4/NOG1 to pre-60S particles.

Danio rerio (taxid: 7955)

>sp|Q5RF04|RLP24_PONAB Probable ribosome biogenesis protein RLP24 OS=Pongo abelii GN=RSL24D1 PE=2 SV=1

 Score =  195 bits (495), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/160 (55%), Positives = 120/160 (75%), Gaps = 4/160 (2%)

Query: 1   MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
           MRIE CYFCS  IYPGHG+ FVRNDCK+FRFC+SKCHK FK+++NPRK  WTKA+RK  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKRRNPRKVRWTKAFRKAAG 60

Query: 61  KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
           K+L VD SFEF KRRN P+KY RE WNKT++A+K+VE IK KRQ  ++  RL+K +E++ 
Sbjct: 61  KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 120

Query: 121 ARDIKAVQRDIAILNDPTEAIKAKKKRMVEAGIVEEIHES 160
            +DIK V+++I ++  P     A K + +E  +V+++ E 
Sbjct: 121 VQDIKEVKQNIHLIRAPL----AGKGKQLEEKMVQQLQED 156

Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of GTPBP4/NOG1 to pre-60S particles.

Pongo abelii (taxid: 9601)

>sp|Q3SZ12|RLP24_BOVIN Probable ribosome biogenesis protein RLP24 OS=Bos taurus GN=RSL24D1 PE=2 SV=1

 Score =  194 bits (494), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/160 (55%), Positives = 120/160 (75%), Gaps = 4/160 (2%)

Query: 1   MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
           MRIE CYFCS  IYPGHG+ FVRNDCK+FRFC+SKCHK FK+K+NPRK  WTKA+RK  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
           K+L VD SFEF KRRN P+KY RE WNKT++A+K+VE IK KRQ  ++  RL+K +E++ 
Sbjct: 61  KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 120

Query: 121 ARDIKAVQRDIAILNDPTEAIKAKKKRMVEAGIVEEIHES 160
            +D+K V+++I ++  P     A K + +E  +V+++ E 
Sbjct: 121 VQDVKEVKQNIHLIRAPL----AGKGKQLEDKMVQKLQED 156

Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of GTPBP4/NOG1 to pre-60S particles.

Bos taurus (taxid: 9913)

>sp|Q6P6G7|RLP24_RAT Probable ribosome biogenesis protein RLP24 OS=Rattus norvegicus GN=Rsl24d1 PE=2 SV=1

 Score =  194 bits (493), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 88/160 (55%), Positives = 120/160 (75%), Gaps = 4/160 (2%)

Query: 1   MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
           MRIE CYFCS  IYPGHG+ FVRNDCK+FRFC+SKCHK FK+K+NPRK  WTKA+RK  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
           K+L VD SFEF KRRN P+KY RE WNKT++A+K+VE IK +RQ  ++  RL+K +E++ 
Sbjct: 61  KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQRRQAKFIMNRLKKNKELQK 120

Query: 121 ARDIKAVQRDIAILNDPTEAIKAKKKRMVEAGIVEEIHES 160
            +DI+ V+++I ++  P     A K + +E  +V+++ E 
Sbjct: 121 VQDIREVKQNIHLIRAPL----AGKGKQLEEKMVQQLQED 156

Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of GTPBP4/NOG1 to pre-60S particles.

Rattus norvegicus (taxid: 10116)

>sp|Q86B05|RLP24_DICDI Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum GN=rlp24 PE=2 SV=1

 Score =  167 bits (423), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 114/164 (69%)

Query: 1   MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
           MRIE CYFCS  +YPGHG+ FVRNDCK FRFCRSKCHK FK K+NPRKT WTKA+RK+ G
Sbjct: 1   MRIEKCYFCSGPVYPGHGVMFVRNDCKQFRFCRSKCHKNFKLKRNPRKTRWTKAFRKLNG 60

Query: 61  KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
           K++ VD + EF K+RN P+KYDRE  N T+ A+ +V+ IK +R+  +   R+   + ++ 
Sbjct: 61  KEMTVDKTLEFEKKRNRPVKYDRELINNTIIAMARVQKIKERREKTFYKNRMEGVKGMQK 120

Query: 121 ARDIKAVQRDIAILNDPTEAIKAKKKRMVEAGIVEEIHESENEA 164
            + +K + ++++++  P+   K +++    A  +E++  ++ ++
Sbjct: 121 KQKLKEINQNLSLIRGPSALNKLQERIKNNAEKIEQLTTTKMQS 164

Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of GTPBP4/NOG1 to pre-60S particles.

Dictyostelium discoideum (taxid: 44689)

>sp|O22165|RLP24_ARATH Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana GN=At2g44860 PE=2 SV=1

 Score =  159 bits (402), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 73/137 (53%), Positives = 97/137 (70%)

Query: 1   MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
           MR+E C+FCSS IYPGHGIQFVRND KIFRFCRSKCHK FK K+NPRK  WTKA+R   G
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
           KD+  D +FEF K+RN P +YDR     T+ AIKK+  I+T R+  ++  RL+  ++ + 
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 121 ARDIKAVQRDIAILNDP 137
             D+K + ++I ++  P
Sbjct: 121 NDDMKELDQNIHMVQAP 137

Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of NOG1 to pre-60S particles.

Arabidopsis thaliana (taxid: 3702)

>sp|Q759D1|RLP24_ASHGO Ribosome biogenesis protein RLP24 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RLP24 PE=3 SV=1

 Score =  158 bits (399), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 71/134 (52%), Positives = 98/134 (73%)

Query: 1   MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
           MRI +C+FCSS +YPGHGI FVRND K FRFCRSKCHK FK+++NPRK  WTKA+RK  G
Sbjct: 1   MRIYSCHFCSSPVYPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLKWTKAFRKAAG 60

Query: 61  KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
           K+LAVD +  FA+RRNVP++Y+RE    T++A+ ++E I+ KR+  +   R++   E + 
Sbjct: 61  KELAVDSTLTFAQRRNVPVRYNRELVETTLKAMTRIEEIRQKRERAFYKNRMKGNTEKDF 120

Query: 121 ARDIKAVQRDIAIL 134
            RD K V+ +  +L
Sbjct: 121 LRDKKLVESNPELL 134

Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of NOG1 to pre-60S particles.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
242013112	175	60S ribosomal protein L24, putative [Ped	0.892	0.948	0.650	2e-58
383860762	173	PREDICTED: probable ribosome biogenesis	0.924	0.994	0.653	1e-57
193643576	181	PREDICTED: probable ribosome biogenesis	0.967	0.994	0.572	3e-56
240848554	181	probable ribosome biogenesis protein RLP	0.962	0.988	0.585	3e-56
91084151	171	PREDICTED: similar to ribosomal protein	0.881	0.959	0.650	4e-56
427786717	164	Putative 60s ribosomal protein l30 isolo	0.881	1.0	0.625	1e-55
340715152	170	PREDICTED: probable ribosome biogenesis	0.913	1.0	0.654	3e-55
346471873	164	hypothetical protein [Amblyomma maculatu	0.881	1.0	0.608	4e-55
264667471	173	ribosomal biogenesis protein RLP24 [Chry	0.892	0.959	0.656	1e-54
442751307	164	Putative 60s ribosomal protein l30 isolo	0.881	1.0	0.602	1e-54

>gi|242013112|ref|XP_002427259.1| 60S ribosomal protein L24, putative [Pediculus humanus corporis] gi|212511592|gb|EEB14521.1| 60S ribosomal protein L24, putative [Pediculus humanus corporis]

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 110/169 (65%), Positives = 133/169 (78%), Gaps = 3/169 (1%)

Query: 1   MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
           MRIETCYFCSS+IYPGHGIQFVRND KIF+FCRSKCH  FKRKKNPRKT WTKAYRK  G
Sbjct: 1   MRIETCYFCSSRIYPGHGIQFVRNDSKIFKFCRSKCHNAFKRKKNPRKTRWTKAYRKTCG 60

Query: 61  KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
           K+L VD SFEF K+RN+P+KYDRE W+KTVE +KKVE IK KRQN ++  RLRKA E+E 
Sbjct: 61  KELTVDSSFEFEKKRNIPIKYDRELWSKTVEIMKKVEEIKQKRQNNHIMNRLRKAIELEK 120

Query: 121 ARDIKAVQRDIAILNDPTEAIKAKKKRMVEAGIVEEIHESENEAEENME 169
           +RDIK V+ +I ++  P   +K K    +E  +VEEIHES+ E +++ E
Sbjct: 121 SRDIKEVKNNIVMIKSPAATLKNK---AIEKAVVEEIHESDVEMQDDEE 166

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860762|ref|XP_003705858.1| PREDICTED: probable ribosome biogenesis protein RLP24-like [Megachile rotundata]

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 113/173 (65%), Positives = 141/173 (81%), Gaps = 1/173 (0%)

Query: 1   MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
           MRIETCYFCSS+IYPGHGIQFVRNDCKIFRFCRSKCH  FK+KKNPRK  WTKAYRK  G
Sbjct: 1   MRIETCYFCSSRIYPGHGIQFVRNDCKIFRFCRSKCHAAFKKKKNPRKVKWTKAYRKTVG 60

Query: 61  KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
           K+LAVDPSFEF KRRN+P+KY+RE WNKT++AIKKVE+I+ +RQNL++ QRLRK RE+E 
Sbjct: 61  KELAVDPSFEFEKRRNIPVKYNRELWNKTIDAIKKVENIRQRRQNLHIMQRLRKGREIEQ 120

Query: 121 ARDIKAVQRDIAILNDPTEAIKAKKKRMVEAGIVEEIHESENEAE-ENMEVDT 172
            RDI+ VQRD++++  P   +K ++K    A   E++ ES +E E E ME+++
Sbjct: 121 ERDIREVQRDLSLIRSPAAGLKERRKLEEAAEQEEKMQESNDEQEPEEMEMNS 173

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193643576|ref|XP_001950456.1| PREDICTED: probable ribosome biogenesis protein RLP24-like [Acyrthosiphon pisum]

 Score =  223 bits (568), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 107/187 (57%), Positives = 137/187 (73%), Gaps = 7/187 (3%)

Query: 1   MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
           MRI+TCYFCSSKIYPGHG+ FVRNDCK+F+FCRSKCH+ F++KKNPR+  WTKAYRK  G
Sbjct: 1   MRIDTCYFCSSKIYPGHGMHFVRNDCKVFKFCRSKCHRAFQKKKNPRRVRWTKAYRKAVG 60

Query: 61  KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
           K+LAVDPSFE  KRRN+P+KYDREFW  ++EAIKKV  I+ KRQ+ Y+ QRLRK REVE 
Sbjct: 61  KELAVDPSFEIEKRRNIPMKYDREFWQMSMEAIKKVTEIQKKRQSTYVMQRLRKGREVEQ 120

Query: 121 ARDIKAVQRDIAILNDPTEAIKAKKKRMVEAGIVEEIHESEN-EAEENMEVDTHWETNED 179
            RDI+ VQRD++++  P   +K +     +    E+ ++ E   AE+   +D        
Sbjct: 121 HRDIREVQRDMSLIRSPAAGLKQRLLTEEKLLEEEQENDVEMISAEDENNID------HS 174

Query: 180 KLTYIKI 186
           KL+YIKI
Sbjct: 175 KLSYIKI 181

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240848554|ref|NP_001155455.1| probable ribosome biogenesis protein RLP24-like [Acyrthosiphon pisum] gi|239799150|dbj|BAH70508.1| ACYPI002061 [Acyrthosiphon pisum]

 Score =  223 bits (568), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 110/188 (58%), Positives = 138/188 (73%), Gaps = 9/188 (4%)

Query: 1   MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
           MRI+TCYFCSSKIYPGHG+ FVRNDCK+F+FCRSKCH+ F++KKNPR+  WTKAYRK  G
Sbjct: 1   MRIDTCYFCSSKIYPGHGMHFVRNDCKVFKFCRSKCHRAFQKKKNPRRVRWTKAYRKAVG 60

Query: 61  KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
           K+LAVDPSFE  KRRN+P+KYDREFW  ++EAIKKV  I+ KRQ+ Y+ QRLRK REVE 
Sbjct: 61  KELAVDPSFEIEKRRNIPMKYDREFWQMSMEAIKKVTEIQKKRQSTYVMQRLRKGREVEQ 120

Query: 121 ARDIKAVQRDIAILNDPTEAIKAKKKRMVEAGIVEEIHESENEAEENMEVDTHWETNED- 179
            RDI+ VQRD++++  P   +K +     +    EE ++ E  A E+       E N D 
Sbjct: 121 HRDIREVQRDMSLIRSPAAGLKQRLATEEKLLEEEEENDVEMIAAED-------ENNIDH 173

Query: 180 -KLTYIKI 186
            KL+YIKI
Sbjct: 174 SKLSYIKI 181

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91084151|ref|XP_970250.1| PREDICTED: similar to ribosomal protein L24 [Tribolium castaneum] gi|270006643|gb|EFA03091.1| hypothetical protein TcasGA2_TC012999 [Tribolium castaneum]

 Score =  222 bits (566), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 110/169 (65%), Positives = 133/169 (78%), Gaps = 5/169 (2%)

Query: 1   MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
           MRIETCYFCSS+IYPGHGIQFVRNDCKIF+FCRSKCH  FK+KKNPRK  WTKAYRK  G
Sbjct: 1   MRIETCYFCSSRIYPGHGIQFVRNDCKIFKFCRSKCHAAFKKKKNPRKVKWTKAYRKTVG 60

Query: 61  KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
           K+LA+DPSFEF KRR+ PLKYDR+ W K +EA+KKVEHIK KRQ  Y+ QRLRK RE+E 
Sbjct: 61  KELAIDPSFEFEKRRHTPLKYDRQTWTKAIEAMKKVEHIKQKRQGTYIMQRLRKGRELEQ 120

Query: 121 ARDIKAVQRDIAILNDPTEAIKAKKKRMVEAGIVEEIHESENEAEENME 169
            RD+K VQRD++++  P   +K +K++       EE+H+SE E E  +E
Sbjct: 121 ERDVKEVQRDLSLIKSPAAGLKERKQKE-----AEEMHDSEEEMEGVVE 164

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427786717|gb|JAA58810.1| Putative 60s ribosomal protein l30 isolog [Rhipicephalus pulchellus]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 107/171 (62%), Positives = 127/171 (74%), Gaps = 7/171 (4%)

Query: 1   MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
           MRIE CYFCSS IYPGHGIQFVRNDCKIFRFCRSKCHKLFK+K+NPRKT WTKA+RK  G
Sbjct: 1   MRIEKCYFCSSPIYPGHGIQFVRNDCKIFRFCRSKCHKLFKKKRNPRKTRWTKAFRKAAG 60

Query: 61  KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
           K+L VDPSFEF KRRNVP+KY+RE W  TV+ I++VE IK KRQ  ++  RL K +E++ 
Sbjct: 61  KELTVDPSFEFEKRRNVPIKYNRELWQNTVKVIQRVEEIKAKRQGHHVMNRLMKGKELDK 120

Query: 121 ARDIKAVQRDIAILNDPTEAIKAKKKRMVEAGIVEEIHESENEAEENMEVD 171
            RDIK VQRD+ ++  P   +K K     E  IVE I E  +  +E M VD
Sbjct: 121 QRDIKEVQRDLCLIRSPAATLKKK-----EQAIVEVIEEHSD--QEEMAVD 164

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715152|ref|XP_003396083.1| PREDICTED: probable ribosome biogenesis protein RLP24-like [Bombus terrestris]

 Score =  219 bits (559), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 112/171 (65%), Positives = 131/171 (76%), Gaps = 1/171 (0%)

Query: 1   MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
           MRIETCYFCSS+IYPGHGIQFVRNDCKIF+FCRSKCH  FK+KKNPRK  WTKAYRK  G
Sbjct: 1   MRIETCYFCSSRIYPGHGIQFVRNDCKIFKFCRSKCHAAFKKKKNPRKVKWTKAYRKTVG 60

Query: 61  KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
           KDLAVDPSFEF KRRN+PLKY+RE W   ++AIKKVE IK KRQNL++ QRLRK RE+E 
Sbjct: 61  KDLAVDPSFEFEKRRNIPLKYNRELWQNAIDAIKKVETIKQKRQNLHIMQRLRKGRELEQ 120

Query: 121 ARDIKAVQRDIAILNDPTEAIKAKKKRMVEAGIVEEIHESENEAEENMEVD 171
            RDIK VQRD++++  P   +K +KK         +    E E +E MEV+
Sbjct: 121 ERDIKEVQRDLSLIRSPAAGLKERKKLEQTEQEEMQESNDEQEQQE-MEVN 170

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346471873|gb|AEO35781.1| hypothetical protein [Amblyomma maculatum]

 Score =  219 bits (558), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 104/171 (60%), Positives = 128/171 (74%), Gaps = 7/171 (4%)

Query: 1   MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
           MRIE CYFCSS +YPGHGIQFVRNDCKIF+FCRSKCHKLFK+K+NPRKT WTKA+RK  G
Sbjct: 1   MRIEKCYFCSSPVYPGHGIQFVRNDCKIFKFCRSKCHKLFKKKRNPRKTKWTKAFRKAAG 60

Query: 61  KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
           K+L VDPSFEF KRRN+P+KY+RE W  TV+A+++VE IK KRQ  ++  RL K +E++ 
Sbjct: 61  KELTVDPSFEFEKRRNIPVKYNRELWQNTVKAMQRVEEIKAKRQGHHVMNRLMKGKELDK 120

Query: 121 ARDIKAVQRDIAILNDPTEAIKAKKKRMVEAGIVEEIHESENEAEENMEVD 171
            RDIK VQRD+ ++  P   +K K     E  IVE I E  +  +E M VD
Sbjct: 121 QRDIKEVQRDLCLIRSPAATLKKK-----EQAIVEVIEEHSD--QEEMAVD 164

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|264667471|gb|ACY71321.1| ribosomal biogenesis protein RLP24 [Chrysomela tremula]

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 111/169 (65%), Positives = 131/169 (77%), Gaps = 3/169 (1%)

Query: 1   MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
           MRIETCYFCSS+IYPGHGIQFVRNDCKIF+FCRSKCH  FK+KKNPRK  WTKAYRK  G
Sbjct: 1   MRIETCYFCSSRIYPGHGIQFVRNDCKIFKFCRSKCHAAFKKKKNPRKVKWTKAYRKTVG 60

Query: 61  KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
           K+L VDPSFEF KRR+VP+KYDRE W K VEA+KKVE IK KRQ  Y+ QRLRK RE+E 
Sbjct: 61  KELTVDPSFEFEKRRHVPIKYDRETWTKAVEAMKKVESIKNKRQGAYIMQRLRKGRELEQ 120

Query: 121 ARDIKAVQRDIAILNDPTEAIKAKKKRMVEAGIVEEIHESENEAEENME 169
            RDIK VQRD++++  P   +   K+R     I E++ ES++E E  +E
Sbjct: 121 ERDIKEVQRDLSLIRSPAAGL---KQRQQGQNIEEDVKESDDEMEGVVE 166

Source: Chrysomela tremula

Species: Chrysomela tremula

Genus: Chrysomela

Family: Chrysomelidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442751307|gb|JAA67813.1| Putative 60s ribosomal protein l30 isolog [Ixodes ricinus]

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 100/166 (60%), Positives = 128/166 (77%), Gaps = 2/166 (1%)

Query: 1   MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
           MRIE CYFCSS IYPGHGIQFVRNDCKIF+FCRSKCHKLFK+K+NPRKT WTKA+RK  G
Sbjct: 1   MRIEKCYFCSSNIYPGHGIQFVRNDCKIFKFCRSKCHKLFKKKRNPRKTRWTKAFRKAAG 60

Query: 61  KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
           K+L VDP+FEF KRRNVP+KY+RE W  TV+AI++VE IK KRQ  ++  RL K +E++ 
Sbjct: 61  KELTVDPAFEFEKRRNVPVKYNRELWQNTVKAIQRVEEIKAKRQGHFIMNRLMKGKELDK 120

Query: 121 ARDIKAVQRDIAILNDPTEAIKAKKKRMVEAGIVEEIHESENEAEE 166
            +DIK VQRD+ ++  P   +K  + ++VE  ++EE  + E   +E
Sbjct: 121 QKDIKEVQRDLCLIKSPAATLKKMEHQIVE--VIEEHSDQEEMVQE 164

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
FB|FBgn0037899	191	RpL24-like "Ribosomal protein	0.779	0.759	0.648	4.9e-53
UNIPROTKB|E1BV86	163	LOC768911 "Uncharacterized pro	0.801	0.914	0.618	5.2e-49
ZFIN|ZDB-GENE-040426-1925	161	rsl24d1 "ribosomal L24 domain	0.801	0.925	0.605	4.7e-48
UNIPROTKB|Q9UHA3	163	RSL24D1 "Probable ribosome bio	0.801	0.914	0.592	6e-48
UNIPROTKB|E2QUH4	163	RSL24D1 "Uncharacterized prote	0.801	0.914	0.592	7.7e-48
MGI|MGI:2681840	163	Rsl24d1 "ribosomal L24 domain	0.801	0.914	0.592	7.7e-48
UNIPROTKB|F1RZD9	163	RSL24D1 "Uncharacterized prote	0.801	0.914	0.592	1.2e-47
UNIPROTKB|Q3SZ12	163	RSL24D1 "Probable ribosome bio	0.801	0.914	0.585	1.6e-47
RGD|1309784	163	Rsl24d1 "ribosomal L24 domain	0.801	0.914	0.578	3.3e-47
DICTYBASE|DDB_G0272789	164	rlp24 "ribosomal protein L24-l	0.784	0.890	0.486	4.2e-40

FB|FBgn0037899 RpL24-like "Ribosomal protein L24-like" [Drosophila melanogaster (taxid:7227)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 94/145 (64%), Positives = 117/145 (80%)

Query:     1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
             MRI+TCYFCSSKIYPGHG+QFVRNDCK+F+FCR KCHK FKRKKNPRK  WTKAYRK  G
Sbjct:     1 MRIQTCYFCSSKIYPGHGVQFVRNDCKVFKFCRGKCHKAFKRKKNPRKVGWTKAYRKAAG 60

Query:    61 KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
             K+LA+DPSFEF KRRNVP+KY RE W K +EAIK+V  IK KR + ++ +RLRK R+VE 
Sbjct:    61 KELAIDPSFEFEKRRNVPMKYSRETWQKGLEAIKRVTEIKEKRTSHFVMERLRKGRQVEI 120

Query:   121 ARDIKAVQRDIAILNDPTEAIKAKK 145
               D+K VQR+++++  P   +K ++
Sbjct:   121 QMDVKDVQRNMSLIRSPAAGLKQRR 145

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|E1BV86 LOC768911 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 94/152 (61%), Positives = 119/152 (78%)

Query:     1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
             MRIE CYFCS  IYPGHG+ FVRNDCKIFRFC+SKCHK FK+K+NPRK  WTKA+RK  G
Sbjct:     1 MRIEKCYFCSGPIYPGHGVMFVRNDCKIFRFCKSKCHKNFKKKRNPRKIRWTKAFRKAAG 60

Query:    61 KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
             K+L VD SFEF KRRN P+KY RE WNKTV+A+K+VE IK KRQ  ++  RL+K++E++ 
Sbjct:    61 KELTVDNSFEFEKRRNEPVKYQRELWNKTVDAMKRVEEIKQKRQARFIMNRLKKSKELQK 120

Query:   121 ARDIKAVQRDIAILNDPTEAIKAKK--KRMVE 150
             A DIK V+++I +L  P  A K K+  ++MV+
Sbjct:   121 AEDIKEVKQNIHLLRAP-HAGKPKQLEEKMVQ 151

GO:0042254 "ribosome biogenesis" evidence=IEA

ZFIN|ZDB-GENE-040426-1925 rsl24d1 "ribosomal L24 domain containing 1" [Danio rerio (taxid:7955)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 92/152 (60%), Positives = 119/152 (78%)

Query:     1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
             MRIE CYFCS+ +YPGHG+ FVRNDCK+FRFCRSKCHK FK+K+NPRKT WTKA+RK  G
Sbjct:     1 MRIEKCYFCSAPVYPGHGMMFVRNDCKVFRFCRSKCHKNFKKKRNPRKTRWTKAFRKSAG 60

Query:    61 KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
             K+L VD S EF KRRN P+KY+RE W+KTVEA++KVE IK KRQ  ++  RL+K +E+E 
Sbjct:    61 KELTVDNSLEFEKRRNTPVKYNRELWSKTVEAMRKVESIKHKRQARFIMNRLKKGKELEK 120

Query:   121 ARDIKAVQRDIAILNDPTEAIKAKK--KRMVE 150
             A DI  V+++I ++  P  A +AK+   +MV+
Sbjct:   121 AADISEVKKNIHLIKAP-HAGQAKQLEDKMVQ 151

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q9UHA3 RSL24D1 "Probable ribosome biogenesis protein RLP24" [Homo sapiens (taxid:9606)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 90/152 (59%), Positives = 118/152 (77%)

Query:     1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
             MRIE CYFCS  IYPGHG+ FVRNDCK+FRFC+SKCHK FK+K+NPRK  WTKA+RK  G
Sbjct:     1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query:    61 KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
             K+L VD SFEF KRRN P+KY RE WNKT++A+K+VE IK KRQ  ++  RL+K +E++ 
Sbjct:    61 KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 120

Query:   121 ARDIKAVQRDIAILNDPTEAIKAKK--KRMVE 150
              +DIK V+++I ++  P  A K K+  ++MV+
Sbjct:   121 VQDIKEVKQNIHLIRAPL-AGKGKQLEEKMVQ 151

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|E2QUH4 RSL24D1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 90/152 (59%), Positives = 118/152 (77%)

Query:     1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
             MRIE CYFCS  IYPGHG+ FVRNDCK+FRFC+SKCHK FK+K+NPRK  WTKA+RK  G
Sbjct:     1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query:    61 KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
             K+L VD SFEF KRRN P+KY RE WNKT++A+K+VE IK KRQ  ++  RL+K +E++ 
Sbjct:    61 KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 120

Query:   121 ARDIKAVQRDIAILNDPTEAIKAKK--KRMVE 150
              +DIK V+++I ++  P  A K K+  ++MV+
Sbjct:   121 VQDIKEVKQNIHLIRAPL-AGKGKQLEEKMVQ 151

GO:0042254 "ribosome biogenesis" evidence=IEA

MGI|MGI:2681840 Rsl24d1 "ribosomal L24 domain containing 1" [Mus musculus (taxid:10090)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 90/152 (59%), Positives = 118/152 (77%)

Query:     1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
             MRIE CYFCS  IYPGHG+ FVRNDCK+FRFC+SKCHK FK+K+NPRK  WTKA+RK  G
Sbjct:     1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query:    61 KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
             K+L VD SFEF KRRN P+KY RE WNKT++A+K+VE IK KRQ  ++  RL+K +E++ 
Sbjct:    61 KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 120

Query:   121 ARDIKAVQRDIAILNDPTEAIKAKK--KRMVE 150
              +DIK V+++I ++  P  A K K+  ++MV+
Sbjct:   121 VQDIKEVKQNIHLIRAPL-AGKGKQLEEKMVQ 151

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|F1RZD9 RSL24D1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 90/152 (59%), Positives = 117/152 (76%)

Query:     1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
             MRIE CYFCS  IYPGHG+ FVRNDCK+FRFC+SKCHK FK+K+NPRK  WTKA+RK  G
Sbjct:     1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query:    61 KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
             K+L VD SFEF KRRN P+KY RE WNKT++A+K+VE IK KRQ  ++  RL+K +E++ 
Sbjct:    61 KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 120

Query:   121 ARDIKAVQRDIAILNDPTEAIKAKK--KRMVE 150
              +DIK V+++I ++  P  A K K+   +MV+
Sbjct:   121 VQDIKEVKQNIHLIRAPL-AGKGKQLEDKMVQ 151

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|Q3SZ12 RSL24D1 "Probable ribosome biogenesis protein RLP24" [Bos taurus (taxid:9913)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 89/152 (58%), Positives = 117/152 (76%)

Query:     1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
             MRIE CYFCS  IYPGHG+ FVRNDCK+FRFC+SKCHK FK+K+NPRK  WTKA+RK  G
Sbjct:     1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query:    61 KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
             K+L VD SFEF KRRN P+KY RE WNKT++A+K+VE IK KRQ  ++  RL+K +E++ 
Sbjct:    61 KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 120

Query:   121 ARDIKAVQRDIAILNDPTEAIKAKK--KRMVE 150
              +D+K V+++I ++  P  A K K+   +MV+
Sbjct:   121 VQDVKEVKQNIHLIRAPL-AGKGKQLEDKMVQ 151

GO:0005730 "nucleolus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

RGD|1309784 Rsl24d1 "ribosomal L24 domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 88/152 (57%), Positives = 118/152 (77%)

Query:     1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
             MRIE CYFCS  IYPGHG+ FVRNDCK+FRFC+SKCHK FK+K+NPRK  WTKA+RK  G
Sbjct:     1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query:    61 KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
             K+L VD SFEF KRRN P+KY RE WNKT++A+K+VE IK +RQ  ++  RL+K +E++ 
Sbjct:    61 KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQRRQAKFIMNRLKKNKELQK 120

Query:   121 ARDIKAVQRDIAILNDPTEAIKAKK--KRMVE 150
              +DI+ V+++I ++  P  A K K+  ++MV+
Sbjct:   121 VQDIREVKQNIHLIRAPL-AGKGKQLEEKMVQ 151

GO:0005730 "nucleolus" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

DICTYBASE|DDB_G0272789 rlp24 "ribosomal protein L24-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 71/146 (48%), Positives = 105/146 (71%)

Query:     1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
             MRIE CYFCS  +YPGHG+ FVRNDCK FRFCRSKCHK FK K+NPRKT WTKA+RK+ G
Sbjct:     1 MRIEKCYFCSGPVYPGHGVMFVRNDCKQFRFCRSKCHKNFKLKRNPRKTRWTKAFRKLNG 60

Query:    61 KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
             K++ VD + EF K+RN P+KYDRE  N T+ A+ +V+ IK +R+  +   R+   + ++ 
Sbjct:    61 KEMTVDKTLEFEKKRNRPVKYDRELINNTIIAMARVQKIKERREKTFYKNRMEGVKGMQK 120

Query:   121 ARDIKAVQRDIAILNDPTEAIKAKKK 146
              + +K + ++++++  P+   K +++
Sbjct:   121 KQKLKEINQNLSLIRGPSALNKLQER 146

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0042273 "ribosomal large subunit biogenesis" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UHA3	RLP24_HUMAN	No assigned EC number	0.5625	0.8387	0.9570	yes	N/A
Q9VGN9	RLP24_DROME	No assigned EC number	0.6482	0.7795	0.7591	yes	N/A
Q07915	RLP24_YEAST	No assigned EC number	0.5373	0.7204	0.6733	yes	N/A
Q759D1	RLP24_ASHGO	No assigned EC number	0.5298	0.7204	0.6802	yes	N/A
Q6P6G7	RLP24_RAT	No assigned EC number	0.55	0.8387	0.9570	yes	N/A
Q6FPU0	RLP24_CANGA	No assigned EC number	0.5298	0.7204	0.6802	yes	N/A
Q8SSF6	RLP24_ENCCU	No assigned EC number	0.42	0.7849	0.9419	yes	N/A
Q99L28	RLP24_MOUSE	No assigned EC number	0.5660	0.8333	0.9509	yes	N/A
Q7ZTZ2	RLP24_DANRE	No assigned EC number	0.5723	0.8333	0.9627	yes	N/A
Q6BH34	RLP24_DEBHA	No assigned EC number	0.4850	0.7204	0.6600	yes	N/A
Q6CNW3	RLP24_KLULA	No assigned EC number	0.4654	0.8440	0.7929	yes	N/A
Q5RF04	RLP24_PONAB	No assigned EC number	0.5562	0.8387	0.9570	yes	N/A
Q6CF69	RLP24_YARLI	No assigned EC number	0.4802	0.7956	0.7872	yes	N/A
Q86B05	RLP24_DICDI	No assigned EC number	0.4451	0.8817	1.0	yes	N/A
Q10353	RLP24_SCHPO	No assigned EC number	0.5072	0.7365	0.7135	yes	N/A
Q3SZ12	RLP24_BOVIN	No assigned EC number	0.5562	0.8387	0.9570	yes	N/A
Q17606	RLP24_CAEEL	No assigned EC number	0.4963	0.7365	0.8456	yes	N/A
O22165	RLP24_ARATH	No assigned EC number	0.5328	0.7365	0.8616	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	186
cd00472	54	cd00472, Ribosomal_L24e_L24, Ribosomal protein L24	1e-30
COG2075	66	COG2075, RPL24A, Ribosomal protein L24E [Translati	5e-29
pfam01246	71	pfam01246, Ribosomal_L24e, Ribosomal protein L24e	2e-26
PRK00807	52	PRK00807, PRK00807, 50S ribosomal protein L24e; Va	8e-16
smart00746	39	smart00746, TRASH, metallochaperone-like domain	1e-08
PRK14891	131	PRK14891, PRK14891, 50S ribosomal protein L24e/unk	2e-08
PTZ00033	125	PTZ00033, PTZ00033, 60S ribosomal protein L24; Pro	3e-08

>gnl|CDD|100103 cd00472, Ribosomal_L24e_L24, Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24)

 Score =  105 bits (264), Expect = 1e-30
 Identities = 35/54 (64%), Positives = 39/54 (72%)

Query: 1  MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKA 54
          M+ E C FC  KIYPGHG  +VRND K+FRFC SKC K F RK+NPRK  WT A
Sbjct: 1  MKTEKCSFCGYKIYPGHGKMYVRNDGKVFRFCSSKCEKNFLRKRNPRKLKWTVA 54

L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identified in bacteria, but a functionally equivalent protein may exist. Bacterial L19 forms an interprotein beta sheet with L14 that is similar to the L24e/L14 interprotein beta sheet observed in the archaeal L24e structures. Some eukaryotic L24 proteins were initially identified as L30, and this alignment model contains several sequences called L30. Length = 54

>gnl|CDD|224986 COG2075, RPL24A, Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]

 Score =  102 bits (255), Expect = 5e-29
 Identities = 36/66 (54%), Positives = 45/66 (68%)

Query: 1  MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
          M++  C FC  KI PG GI +VRND K+ RFC SKC KLFK  +NPRK  WTK YRK+  
Sbjct: 1  MKVRVCSFCGKKIEPGTGIMYVRNDGKVLRFCSSKCEKLFKLGRNPRKLKWTKKYRKMHK 60

Query: 61 KDLAVD 66
          K++  +
Sbjct: 61 KEIKEE 66

Length = 66

>gnl|CDD|110260 pfam01246, Ribosomal_L24e, Ribosomal protein L24e

 Score = 95.7 bits (238), Expect = 2e-26
 Identities = 40/64 (62%), Positives = 44/64 (68%)

Query: 1  MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
          M++E C F   KIYPGHGI FVR D K+FRFC SKC K F  K+NPRK AWTK YRK   
Sbjct: 1  MKVELCSFSGYKIYPGHGIMFVRKDSKVFRFCSSKCEKNFHMKRNPRKLAWTKLYRKQHK 60

Query: 61 KDLA 64
          K  A
Sbjct: 61 KGEA 64

Length = 71

>gnl|CDD|179131 PRK00807, PRK00807, 50S ribosomal protein L24e; Validated

 Score = 67.7 bits (166), Expect = 8e-16
 Identities = 25/52 (48%), Positives = 30/52 (57%)

Query: 3  IETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKA 54
            TC FC  +I PG G  +V+ D  I  FC SKC K +K  + PRK  WTKA
Sbjct: 1  TRTCSFCGKEIEPGTGKMYVKKDGTILYFCSSKCEKNYKLGRVPRKLKWTKA 52

Length = 52

>gnl|CDD|214799 smart00746, TRASH, metallochaperone-like domain

 Score = 48.5 bits (116), Expect = 1e-08
 Identities = 17/39 (43%), Positives = 21/39 (53%)

Query: 6  CYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKK 44
          C FC   IY       V ND K++ FC SKC   FK+K+
Sbjct: 1  CSFCGKDIYNPGTGIMVVNDGKVYYFCSSKCLSKFKKKR 39

Length = 39

>gnl|CDD|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain fusion protein; Provisional

 Score = 50.3 bits (120), Expect = 2e-08
 Identities = 21/59 (35%), Positives = 28/59 (47%)

Query: 2  RIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
             TC +   +I PG G  FVR D  +  F  SKC K +   +  R   WT+A R  +G
Sbjct: 3  ETRTCDYTGEEIEPGTGTMFVRKDGTVLHFVDSKCEKNYDLGREARDLEWTEAGRAEKG 61

Length = 131

>gnl|CDD|140068 PTZ00033, PTZ00033, 60S ribosomal protein L24; Provisional

 Score = 49.6 bits (118), Expect = 3e-08
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 1  MRIETCYFCSSKIYPGHGIQFV----RNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYR 56
          MR   C F    ++PGHG ++V     +   +  F R KC  L+ RKKNPR   WT+ YR
Sbjct: 1  MRTIACEFSHFAVHPGHGRRYVPFAFLSTKPVLTFLRPKCFALYMRKKNPRFLPWTRTYR 60

Query: 57 KVRGK 61
          ++  K
Sbjct: 61 RINRK 65

Length = 125

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	186
KOG1723|consensus	162		100.0
PTZ00033	125	60S ribosomal protein L24; Provisional	100.0
KOG1722|consensus	155		100.0
PF01246	71	Ribosomal_L24e: Ribosomal protein L24e; InterPro:	100.0
PRK14891	131	50S ribosomal protein L24e/unknown domain fusion p	100.0
COG2075	66	RPL24A Ribosomal protein L24E [Translation, riboso	100.0
cd00472	54	Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a	99.97
PRK00807	52	50S ribosomal protein L24e; Validated	99.95
smart00746	39	TRASH metallochaperone-like domain.	98.56
PF08394	37	Arc_trans_TRASH: Archaeal TRASH domain; InterPro:	97.17
PF04945	47	YHS: YHS domain; InterPro: IPR007029 This short pr	97.06
PF06467	43	zf-FCS: MYM-type Zinc finger with FCS sequence mot	96.18
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	94.64
PF05573	149	NosL: NosL; InterPro: IPR008719 NosL is one of the	94.48
COG3350	53	Uncharacterized conserved protein [Function unknow	94.01
PF09943	101	DUF2175: Uncharacterized protein conserved in arch	91.94
cd01057	465	AAMH_A Aromatic and Alkene Monooxygenase Hydroxyla	82.52
PF04570	58	DUF581: Protein of unknown function (DUF581); Inte	80.91

>KOG1723|consensus

Probab=100.00  E-value=4.5e-49  Score=323.12  Aligned_cols=148  Identities=57%  Similarity=1.053  Sum_probs=144.8

Q ss_pred             CceeecccCCCCccCCccceEEeeCCceeEEechhHHHhhhcccCCccchhhHHHHHHhCCcccccchhhhhhhhCCccc
Q psy4931           1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLK   80 (186)
Q Consensus         1 Mr~e~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f~~KrnPRKl~WT~~~Rr~~kKe~~~d~~~efekRRn~~vK   80 (186)
                      ||+++|+||+++||||||+|||+||.++|.||+|+|+++|++++|||++.||.++|+++||++.+|++++|++|||.|++
T Consensus         1 Mri~kc~fcss~IyPgHgi~Fv~Nd~k~f~Fc~skc~k~f~~k~nPrk~~~tka~rKaagre~~~d~~~e~~~rrn~~~~   80 (162)
T KOG1723|consen    1 MRIEKCYFCSSPIYPGHGIMFVRNDCKVFRFCKSKCHKNFKQKKNPRKVGWTKAFRKAAGRELVTDSTFEFEKRRNVPRK   80 (162)
T ss_pred             CceeeeeeecCcccCCCceEEEecCcchhHHHHhhhhhhhhhhcCCCccchHHHHHHHhhhhHhhhhhHHHHHhcCcchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHhHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHh
Q psy4931          81 YDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEAIKAKKKRM  148 (186)
Q Consensus        81 y~R~lv~~tl~amkrve~Ik~kR~~~~~~~R~~~~k~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~  148 (186)
                      |+|+.++.|++||++|.+|+.+|++.||.+||+++++.++..|+++|.+|+|||++|.++.+++....
T Consensus        81 y~r~~~~~Ti~a~k~v~~i~~~~~~~~i~~rL~~~ke~~~~~d~k~v~~n~~li~~~~~~~~~~~~~~  148 (162)
T KOG1723|consen   81 YDRELINKTIDAMKRVLEIKQKREAHFIGNRLKKGKEAQLVQDIKEVKQNIHLIRAPEAGKEKQLAEK  148 (162)
T ss_pred             hcccchhhHHHHHHHHHhhcccchhhhhhhccCccchhccchhHHHHHhhhhhhcchhhhhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998876544

>PTZ00033 60S ribosomal protein L24; Provisional

Probab=100.00  E-value=7.1e-45  Score=287.90  Aligned_cols=115  Identities=30%  Similarity=0.511  Sum_probs=104.4

Q ss_pred             CceeecccCCCCccCCccceEEe----eCCceeEEechhHHHhhhcccCCccchhhHHHHHHhCCcccccchhhhhhhhC
Q psy4931           1 MRIETCYFCSSKIYPGHGIQFVR----NDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRN   76 (186)
Q Consensus         1 Mr~e~C~Fcg~~IyPGhG~~fVr----nDgkvf~FcssKC~k~f~~KrnPRKl~WT~~~Rr~~kKe~~~d~~~efekRRn   76 (186)
                      |+++.|+|||++||||||++||+    +||+||+||||||+++|++++|||+|.||.+||++|||+++++ +  +++|++
T Consensus         1 Mk~~~C~Fsg~~IyPG~G~~~Vr~~~~~Dgkv~~F~~sKc~~~~~~krnPRkl~WT~~yRr~~kK~~~e~-~--~kkR~~   77 (125)
T PTZ00033          1 MRTIACEFSHFAVHPGHGRRYVPFAFLSTKPVLTFLRPKCFALYMRKKNPRFLPWTRTYRRINRKTTTDR-V--QRRRAA   77 (125)
T ss_pred             CceeEecCcCCcccCCCCcEeeecccCCCCCEEEEecHHHHHHHHCcCCCccchHHHHHHHHhCCcchhH-H--HHHHhc
Confidence            89999999999999999999999    9999999999999999999999999999999999999997654 3  478889


Q ss_pred             CcccchhhHHHHhHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy4931          77 VPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVETARDI  124 (186)
Q Consensus        77 ~~vKy~R~lv~~tl~amkrve~Ik~kR~~~~~~~R~~~~k~~~~~~~~  124 (186)
                      +||+|||+|||+||      ++|+++|++....++++...+.+.+.+.
T Consensus        78 rtvK~qRaivg~sL------e~I~~kR~~k~evr~aar~~a~r~~Ke~  119 (125)
T PTZ00033         78 RTVKVQRAIVGADL------SYIQEVRAYVQKVDRSAKAKAVRAEKAE  119 (125)
T ss_pred             CCccchHHHHHHHH------HHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            99999999999997      8899999999999888776665544443

>KOG1722|consensus

Probab=100.00  E-value=7.2e-38  Score=253.48  Aligned_cols=99  Identities=41%  Similarity=0.749  Sum_probs=87.8

Q ss_pred             CceeecccCCCCccCCccceEEeeCCceeEEechhHHHhhhcccCCccchhhHHHHHHhCCcccccchhhhhhhhCCcc-
Q psy4931           1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPL-   79 (186)
Q Consensus         1 Mr~e~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f~~KrnPRKl~WT~~~Rr~~kKe~~~d~~~efekRRn~~v-   79 (186)
                      |++++|+|||++||||||+.|||.||+||+|+|+||.++|++++|||+|.||.+||+.|+|+.+++.   ..+|+++++ 
T Consensus         1 MKvElCsFSG~KIyPG~G~r~vR~D~Kvf~Fln~Kc~~~f~~rrnPr~l~WTvLyR~khkKg~~ee~---~kkrtrrt~k   77 (155)
T KOG1722|consen    1 MKVELCSFSGYKIYPGHGRRFVRGDGKVFRFLNSKCESLFLQRRNPRRLAWTVLYRKKHKKGIQEEA---AKKRTRRTVK   77 (155)
T ss_pred             CceeEeeccCceecCCCceeEEecCCeeeeehhhhhHHHHHhccChhhhhHHHHHHHHhhcchhHHH---HHHHhhhhhh
Confidence            8999999999999999999999999999999999999999999999999999999999999977642   245555655 


Q ss_pred             cchhhHHHHhHHHHHhHHHHHHHHHHHHH
Q psy4931          80 KYDREFWNKTVEAIKKVEHIKTKRQNLYL  108 (186)
Q Consensus        80 Ky~R~lv~~tl~amkrve~Ik~kR~~~~~  108 (186)
                      +|||+|+|+||      +.|.++|++..-
T Consensus        78 ~~qRaI~GasL------~~I~~KRn~kpe  100 (155)
T KOG1722|consen   78 KFQRAIVGASL------DVILEKRNQKPE  100 (155)
T ss_pred             hhhhhhccccH------HHHHHHhccChH
Confidence            59999999998      777888877544

>PF01246 Ribosomal_L24e: Ribosomal protein L24e; InterPro: IPR000988 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=4.5e-37  Score=223.03  Aligned_cols=67  Identities=55%  Similarity=1.014  Sum_probs=53.5

Q ss_pred             CceeecccCCCCccCCccceEEeeCCceeEEechhHHHhhhcccCCccchhhHHHHHHhCCcccccc
Q psy4931           1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDP   67 (186)
Q Consensus         1 Mr~e~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f~~KrnPRKl~WT~~~Rr~~kKe~~~d~   67 (186)
                      |++++|+|||++||||||+|||++||++|+|||+||.+||++++|||+|+||.+||++|+|+++++.
T Consensus         1 mk~~~C~Fsg~~I~PG~G~~~Vr~DG~v~~F~s~Kc~~~~~~krnPrkl~WT~~~Rr~~kK~~~~~~   67 (71)
T PF01246_consen    1 MKTEKCSFSGYKIYPGHGKMYVRNDGKVFYFCSSKCEKLFKLKRNPRKLKWTVAYRRQHKKGQSEEA   67 (71)
T ss_dssp             SSSEE-TTT-SEE-SSSSEEEE-TTS-EEEESSHHHHHHHHTT--GGGSTTSTTTCHHH-----SSS
T ss_pred             CceEEecccCCccCCCCCeEEEecCCCeEEEeCHHHHHHHHccCCcccchhHHHHHHHhCchhhhhH
Confidence            8999999999999999999999999999999999999999999999999999999999999988753

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeabacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families [] consists of mammalian ribosomal protein L24; yeast ribosomal protein L30A/B (Rp29) (YL21); Kluyveromyces lactis ribosomal protein L30; Arabidopsis thaliana ribosomal protein L24 homolog; Haloarcula marismortui ribosomal protein HL21/HL22; and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ1201. These proteins have 60 to 160 amino-acid residues. This entry represents proteins related to the L24e ribosomal proteins.; PDB: 2ZKR_u 1VQ9_U 1VQL_U 1KD1_V 1VQP_U 3CCM_U 3CD6_U 3CCL_U 3CCR_U 1Q86_V ....

>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional

Probab=100.00  E-value=2.5e-36  Score=240.55  Aligned_cols=62  Identities=34%  Similarity=0.674  Sum_probs=61.1

Q ss_pred             CceeecccCCCCccCCccceEEeeCCceeEEechhHHHhhhcccCCccchhhHHHHHHhCCc
Q psy4931           1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKD   62 (186)
Q Consensus         1 Mr~e~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f~~KrnPRKl~WT~~~Rr~~kKe   62 (186)
                      |++++|+|||++||||||+|||||||+||+||||||++||++|||||||+||++||+.+||.
T Consensus         2 m~~e~CsFcG~kIyPG~G~~fVR~DGkvf~FcssKC~k~f~~kRnPRKlkWT~~yRk~~g~~   63 (131)
T PRK14891          2 VETRTCDYTGEEIEPGTGTMFVRKDGTVLHFVDSKCEKNYDLGREARDLEWTEAGRAEKGPA   63 (131)
T ss_pred             CceeeecCcCCcccCCCCcEEEecCCCEEEEecHHHHHHHHccCCCccchhHHHHHHHcCch
Confidence            79999999999999999999999999999999999999999999999999999999999996

>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.3e-35  Score=211.03  Aligned_cols=65  Identities=55%  Similarity=1.089  Sum_probs=62.9

Q ss_pred             CceeecccCCCCccCCccceEEeeCCceeEEechhHHHhhhcccCCccchhhHHHHHHhCCcccc
Q psy4931           1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAV   65 (186)
Q Consensus         1 Mr~e~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f~~KrnPRKl~WT~~~Rr~~kKe~~~   65 (186)
                      |+++.|+|||.+||||||+|||+|||++|+||||||+++|+++||||+|+||..||++++|+...
T Consensus         1 m~~~~CsFcG~~I~PGtG~m~Vr~Dg~v~~FcssKc~k~~~~~rnPRk~~WT~~~~~~~~k~~~~   65 (66)
T COG2075           1 MKVRVCSFCGKKIEPGTGIMYVRNDGKVLRFCSSKCEKLFKLGRNPRKLKWTKKYRKMHKKEIKE   65 (66)
T ss_pred             CceeEecCcCCccCCCceEEEEecCCeEEEEechhHHHHHHccCCCccchhHHHHHHHHHhhhcc
Confidence            88999999999999999999999999999999999999999999999999999999999998754

>cd00472 Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24)

Probab=99.97  E-value=5.2e-33  Score=192.62  Aligned_cols=54  Identities=65%  Similarity=1.229  Sum_probs=52.7

Q ss_pred             CceeecccCCCCccCCccceEEeeCCceeEEechhHHHhhhcccCCccchhhHH
Q psy4931           1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKA   54 (186)
Q Consensus         1 Mr~e~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f~~KrnPRKl~WT~~   54 (186)
                      |++++|+|||++||||||+||||+||++|+|||+||+++|.+|+|||+|+||.+
T Consensus         1 m~~~~C~f~g~~I~PG~G~~~Vr~Dgkv~~F~s~Kc~~~~~~krnPRkv~WT~~   54 (54)
T cd00472           1 MKTEKCSFCGYKIYPGHGKMYVRNDGKVFRFCSSKCEKNFLRKRNPRKLKWTVA   54 (54)
T ss_pred             CcEEEecCcCCeecCCCccEEEecCCCEEEEECHHHHHHHHCcCCCCcceeecC
Confidence            899999999999999999999999999999999999999999999999999963

L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identifi

>PRK00807 50S ribosomal protein L24e; Validated

Probab=99.95  E-value=2.2e-29  Score=172.64  Aligned_cols=52  Identities=48%  Similarity=0.943  Sum_probs=49.9

Q ss_pred             eeecccCCCCccCCccceEEeeCCceeEEechhHHHhhhcccCCccchhhHH
Q psy4931           3 IETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKA   54 (186)
Q Consensus         3 ~e~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f~~KrnPRKl~WT~~   54 (186)
                      +++|+|||++||||||++||++||++|+|||+||+++|++|+|||+|+||.+
T Consensus         1 ~~~C~fcG~~I~pg~G~~~vr~Dgkv~~Fcs~KC~~~f~~~~nprk~~WT~~   52 (52)
T PRK00807          1 TRTCSFCGKEIEPGTGKMYVKKDGTILYFCSSKCEKNYKLGRVPRKLKWTKA   52 (52)
T ss_pred             CcccCCCCCeEcCCCCeEEEEeCCcEEEEeCHHHHHHHHccCCCCccccccC
Confidence            4689999999999999999999999999999999999999999999999974

>smart00746 TRASH metallochaperone-like domain

Probab=98.56  E-value=9.5e-08  Score=54.93  Aligned_cols=37  Identities=59%  Similarity=1.199  Sum_probs=33.9

Q ss_pred             cccCCCCcc-CCccceEEeeCCceeEEechhHHHhhhcc
Q psy4931           6 CYFCSSKIY-PGHGIQFVRNDCKIFRFCRSKCHKLFKRK   43 (186)
Q Consensus         6 C~Fcg~~Iy-PGhG~~fVrnDgkvf~FcssKC~k~f~~K   43 (186)
                      |.+||..|+ |+.|..++ .||++++||+..|...|..+
T Consensus         1 c~~C~~~~~~~~~~~~~~-~~g~~~~FCs~~c~~~~~~~   38 (39)
T smart00746        1 CSFCGKDIYNPGTGIMVV-NDGKVFYFCSSKCLSKFKKK   38 (39)
T ss_pred             CCCCCCCccCCCCceEEE-ECCEEEEEeCHHHHHHHHhc
Confidence            899999999 88899998 99999999999999998754

>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators

Probab=97.17  E-value=0.00056  Score=44.68  Aligned_cols=36  Identities=33%  Similarity=0.798  Sum_probs=31.6

Q ss_pred             cccCCCCccCCccceEEeeCCceeEEechhHHHhhhcc
Q psy4931           6 CYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRK   43 (186)
Q Consensus         6 C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f~~K   43 (186)
                      |.+||.+|. |.++.| +-++++++||..-|.+-|+.+
T Consensus         1 Cd~CG~~I~-~eP~~~-k~~~~~y~fCC~tC~~~fk~k   36 (37)
T PF08394_consen    1 CDYCGGEIT-GEPIVV-KIGNKVYYFCCPTCLSQFKKK   36 (37)
T ss_pred             CCccCCccc-CCEEEE-EECCeEEEEECHHHHHHHHhh
Confidence            899999998 777765 458999999999999999865

It is thought to function as a metal-sensing regulatory module [].

>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long

Probab=97.06  E-value=0.00057  Score=44.94  Aligned_cols=36  Identities=25%  Similarity=0.606  Sum_probs=26.8

Q ss_pred             cccCCCCccCCccceEEeeCCceeEEechhHHHhhhc
Q psy4931           6 CYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKR   42 (186)
Q Consensus         6 C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f~~   42 (186)
                      +.-||-.| ||.....+.-+|++|+|||.-|...|..
T Consensus         3 DPvcg~~v-~~~~~~~~~y~G~~Y~FCS~~C~~~F~~   38 (47)
T PF04945_consen    3 DPVCGMKV-PGNAAYSVEYNGRTYYFCSEGCKEKFEA   38 (47)
T ss_dssp             B-GGG-BE------EEEEETTEEEEESSHHHHHHHHC
T ss_pred             CCCCCCEE-ccCccEEEEECCEEEEEcCHHHHHHHHH
Confidence            56799999 9999999999999999999999999964

It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....

>PF06467 zf-FCS: MYM-type Zinc finger with FCS sequence motif; InterPro: IPR010507 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.18  E-value=0.002  Score=40.93  Aligned_cols=37  Identities=27%  Similarity=0.545  Sum_probs=26.7

Q ss_pred             eeecccCCCCccCCc-cceEEeeCCceeEEechhHHHhh
Q psy4931           3 IETCYFCSSKIYPGH-GIQFVRNDCKIFRFCRSKCHKLF   40 (186)
Q Consensus         3 ~e~C~Fcg~~IyPGh-G~~fVrnDgkvf~FcssKC~k~f   40 (186)
                      ...|++|+..|+.+. + .-+..||++..|||.-|...|
T Consensus         6 ~~~C~~C~~~~~~~~~~-~~~~~~g~~~~FCS~~C~~~y   43 (43)
T PF06467_consen    6 MKTCSYCKKYIPNKPTM-IEVQYDGKMKQFCSQSCLSSY   43 (43)
T ss_dssp             CEE-TTT--EEECCC-----EE-TTTTSCCSSHHHHHHH
T ss_pred             CCcCcccCCcccCCCcc-ccccccCcccChhCHHHHhhC
Confidence            457999999999888 5 888999999999999998765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. MYM-type zinc fingers were identified in MYM family proteins []. Human protein Q14202 from SWISSPROT is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1 []. Q9UBW7 from SWISSPROT is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1 []; in atypical myeloproliferative disorders it is rearranged []. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2L8E_A 2DAS_A.

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=94.64  E-value=0.0067  Score=43.10  Aligned_cols=36  Identities=36%  Similarity=0.806  Sum_probs=26.4

Q ss_pred             eecccCCCCccCCccceEEeeCCceeEEechhHHHhhh-cccCCccchh
Q psy4931           4 ETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFK-RKKNPRKTAW   51 (186)
Q Consensus         4 e~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f~-~KrnPRKl~W   51 (186)
                      ..|-+||.+|.|.            -.|||.+|+..+. ..+..++..|
T Consensus         4 kHC~~CG~~Ip~~------------~~fCS~~C~~~~~k~qk~~~~~~~   40 (59)
T PF09889_consen    4 KHCPVCGKPIPPD------------ESFCSPKCREEYRKRQKRMRKTQY   40 (59)
T ss_pred             CcCCcCCCcCCcc------------hhhhCHHHHHHHHHHHHHHHHHHH
Confidence            4699999999994            4799999998875 3333444444

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster

Probab=94.48  E-value=0.029  Score=44.91  Aligned_cols=39  Identities=23%  Similarity=0.603  Sum_probs=17.9

Q ss_pred             eecccCCCCc--cCCc-cceEEeeCCceeEEechhHHHhhhc
Q psy4931           4 ETCYFCSSKI--YPGH-GIQFVRNDCKIFRFCRSKCHKLFKR   42 (186)
Q Consensus         4 e~C~Fcg~~I--yPGh-G~~fVrnDgkvf~FcssKC~k~f~~   42 (186)
                      ..|.+||-.|  |||. |.++..+.+++++||+-.|--.|.+
T Consensus        26 ~~C~~CgM~i~d~p~~~aqi~~~~g~~~~~Fdsi~c~~~~~~   67 (149)
T PF05573_consen   26 DRCPVCGMVISDYPGFAAQIIYKDGEKVYKFDSIGCMFAYLK   67 (149)
T ss_dssp             -----------------EEEEETT-SSEEEES-HHHHHHHHT
T ss_pred             CccCCCCCEeccCCCccEEEEECCCCEEEEECCHHHHHHHHh
Confidence            5799999999  7885 5666555449999999999877764

NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.

>COG3350 Uncharacterized conserved protein [Function unknown]

Probab=94.01  E-value=0.077  Score=37.31  Aligned_cols=38  Identities=26%  Similarity=0.507  Sum_probs=30.3

Q ss_pred             ccCCCCccCCccceEEeeCCceeEEechhHHHhhhcccCC
Q psy4931           7 YFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNP   46 (186)
Q Consensus         7 ~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f~~KrnP   46 (186)
                      ..||.+|.+-.-..=.--+|++|+|||..|.-.|+  .||
T Consensus         6 PVcgm~v~~~~a~~k~~Y~GktYYFcse~~~~~F~--~~P   43 (53)
T COG3350           6 PVCGMKVDNENAEYKSSYGGKTYYFCSEECKEKFK--DNP   43 (53)
T ss_pred             CCcCccccccccceeEEeCCEEEEEeCHHHHHHHH--HCH
Confidence            46888888777666666789999999999999885  455

>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function

Probab=91.94  E-value=0.052  Score=42.46  Aligned_cols=28  Identities=29%  Similarity=0.713  Sum_probs=23.2

Q ss_pred             eecccCCCCccCCccceEEeeCCceeEEe
Q psy4931           4 ETCYFCSSKIYPGHGIQFVRNDCKIFRFC   32 (186)
Q Consensus         4 e~C~Fcg~~IyPGhG~~fVrnDgkvf~Fc   32 (186)
                      -+|++||.+||-|-...|..+ |-|.|=|
T Consensus         3 WkC~iCg~~I~~gqlFTF~~k-G~VH~~C   30 (101)
T PF09943_consen    3 WKCYICGKPIYEGQLFTFTKK-GPVHYEC   30 (101)
T ss_pred             eEEEecCCeeeecceEEEecC-CcEeHHH
Confidence            479999999999998888888 7765544

>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain

Probab=82.52  E-value=1.5  Score=41.85  Aligned_cols=53  Identities=17%  Similarity=0.499  Sum_probs=40.5

Q ss_pred             ecccCCCCccC----Cccc-eEEeeCCceeEEechhHHHhhhcccCCccc--hhhHHHHHHh
Q psy4931           5 TCYFCSSKIYP----GHGI-QFVRNDCKIFRFCRSKCHKLFKRKKNPRKT--AWTKAYRKVR   59 (186)
Q Consensus         5 ~C~Fcg~~IyP----GhG~-~fVrnDgkvf~FcssKC~k~f~~KrnPRKl--~WT~~~Rr~~   59 (186)
                      .|.-|+-||-|    +... .-.--+|+.|+|||--|+.-|.+  +|-+-  .|+..-|-..
T Consensus       382 ~c~vC~~p~~~~~~~~~~~~~~~ey~G~~y~FCS~~C~~~F~~--ePerY~~~~~~~~~~~~  441 (465)
T cd01057         382 LCNVCQVPCVFTEDLTAEAPRVLEYNGRKYHFCSEGCEWIFEQ--EPERYAGHWNPVDRFLG  441 (465)
T ss_pred             CCCCCCCeeccccCcccccceEEEECCEEEEecCHHHHHHHHH--CHHHHhcCCCHHHHHhc
Confidence            79999999985    4443 44556999999999999999986  88776  5665555444

Aromatic and Alkene Monooxygenase Hydroxylases, subunit A (AAMH_A). Subunit A of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds, however, the beta-subunit lacks critical diiron ligands and a C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphtho

>PF04570 DUF581: Protein of unknown function (DUF581); InterPro: IPR007650 This is a family of uncharacterised proteins

Probab=80.91  E-value=1.5  Score=31.19  Aligned_cols=34  Identities=35%  Similarity=0.845  Sum_probs=27.9

Q ss_pred             eecccCCCCccCCccceEEeeCCceeEEechhHHHhh
Q psy4931           4 ETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLF   40 (186)
Q Consensus         4 e~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f   40 (186)
                      ..|++|..++-||..+-.-|-|.-   |||.-|+...
T Consensus        17 ~~C~~C~k~L~~~~DiymYrGd~a---FCS~ECR~~q   50 (58)
T PF04570_consen   17 SFCYLCKKKLDPGKDIYMYRGDKA---FCSEECRSQQ   50 (58)
T ss_pred             HHHHccCCCCCCCCCeeeeccccc---cccHHHHHHH
Confidence            469999999999998766666654   9999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	186
3izs_Z	155	Localization Of The Large Subunit Ribosomal Protein		6e-14
3izr_Z	162	Localization Of The Large Subunit Ribosomal Protein		2e-13
2zkr_u	157	Structure Of A Mammalian Ribosomal 60s Subunit With		3e-12
1s1i_S	56	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		5e-11
3jyw_S	45	Structure Of The 60s Proteins For Eukaryotic Riboso		2e-09
3j21_V	66	Promiscuous Behavior Of Proteins In Archaeal Riboso		1e-08
3zf7_Y	125	High-resolution Cryo-electron Microscopy Structure		2e-07
4a17_T	158	T.Thermophila 60s Ribosomal Subunit In Complex With		2e-06
2qa4_U	67	A More Complete Structure Of The The L7L12 STALK OF		4e-05
1ffk_R	66	Crystal Structure Of The Large Ribosomal Subunit Fr		4e-05

>pdb|3IZS|Z Chain Z, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 155

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 59/101 (58%), Gaps = 5/101 (4%)
Query: 1   MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
           M++E   F  +KIYPG G  FVR D KIFRF  SK   LFK++KNPR+ AWT  +RK   
Sbjct: 1   MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHK 60
Query: 61  KDLAVDPSFEFAKRRN-VPLKYDREFWNKTVEAIKKVEHIK 100
           K +    + E AK+R+   +K  R     +++ IK+   +K
Sbjct: 61  KGI----TEEVAKKRSRKTVKAQRPITGASLDLIKERRSLK 97

>pdb|3IZR|Z Chain Z, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 162

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 1  MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
          ++ E C F   KIYPG GI+F+R D ++F F  SKC + F  +  P K  WT  YRK   
Sbjct: 3  LKTELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHK 62
Query: 61 KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKK 95
          KD+  +   +  +RR     Y R     T+E I+K
Sbjct: 63 KDIHAEAVKK--RRRTTKKPYSRSIVGATLEVIQK 95

>pdb|2ZKR|UU Chain u, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 157

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 37/57 (64%)
Query: 1  MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRK 57
          M++E C F   KIYPGHG ++ R D K+F+F  +KC   F  K+NPR+  WT  YR+
Sbjct: 1  MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRR 57

>pdb|1S1I|S Chain S, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h. Length = 56

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 38/56 (67%)
Query: 1  MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYR 56
          M++E   F  +KIYPG G  FVR D KIFRF  SK   LFK++KNPR+ AWT  +R
Sbjct: 1  MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFR 56

>pdb|3JYW|S Chain S, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 45

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/45 (62%), Positives = 32/45 (71%)
Query: 8  FCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWT 52
          F  +KIYPG G  FVR D KIFRF  SK   LFK++KNPR+ AWT
Sbjct: 1  FSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWT 45

>pdb|3J21|V Chain V, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 66

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 2  RIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVR 59
          R   C +C     PG G  +VRND ++  FC  KC + +   +NPRK  WTKAY++ R
Sbjct: 3  RWNVCSYCGKPFEPGTGKMYVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTKAYQEAR 60

>pdb|3ZF7|Y Chain Y, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 125

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 1  MRIETCYFCSSKIYPGHGIQFVR----NDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYR 56
          MR   C F    ++PGHG ++V     +   +  F R KC  ++ RKKNPR  AWT+ YR
Sbjct: 1  MRTIDCEFSHFAVHPGHGRRYVPFAFLSTKPVLTFARPKCFAMYMRKKNPRFIAWTRTYR 60
Query: 57 KV 58
          ++
Sbjct: 61 RI 62

>pdb|4A17|T Chain T, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 158

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 1  MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
          +R  TC FC  +IYPG G +F+  D + F F   K   L  RK   +K  WT A R++  
Sbjct: 3  VRTGTCSFCEYRIYPGRGQRFIAKDGRGFFFLTKKAKCLSLRKVKAQKITWTIARRRLWK 62
Query: 61 KDLAVDPSFEFAKRRNVPL 79
          K  A D + +  K+RNV +
Sbjct: 63 KVKATDIA-QKKKKRNVTV 80

>pdb|2QA4|U Chain U, A More Complete Structure Of The The L7L12 STALK OF THE Haloarcula Marismortui 50s Large Ribosomal Subunit Length = 67

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 24/60 (40%)
Query: 2  RIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGK 61
          R   C +C + I PG G  FV  D     FC SKC       +  R   WT   R   G+
Sbjct: 3  RTRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAGE 62

>pdb|1FFK|R Chain R, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 66

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 24/60 (40%)
Query: 2  RIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGK 61
          R   C +C + I PG G  FV  D     FC SKC       +  R   WT   R   G+
Sbjct: 2  RTRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAGE 61

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	186
3iz5_Z	162	60S ribosomal protein L24 (L24E); eukaryotic ribos	3e-41
3izc_Z	155	60S ribosomal protein RPL24 (L24E); eukaryotic rib	6e-38
2zkr_u	157	60S ribosomal protein L24; protein-RNA complex, 60	8e-38
4a17_T	158	RPL24, 60S ribosomal protein L21; eukaryotic ribos	3e-35
1vq8_U	66	50S ribosomal protein L24E; ribosome 50S, protein-	7e-31
3jyw_S	45	60S ribosomal protein L24(A); eukaryotic ribosome,	6e-24

>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 157

 Score =  127 bits (319), Expect = 8e-38
 Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 3/151 (1%)

Query: 1   MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
           M++E C F   KIYPGHG ++ R D K+F+F  +KC   F  K+NPR+  WT  YR+   
Sbjct: 1   MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60

Query: 61  KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
           K  + +      KR    +K+ R     ++  I    + K + +     Q +R A+E + 
Sbjct: 61  KGQSEEIQ---KKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKK 117

Query: 121 ARDIKAVQRDIAILNDPTEAIKAKKKRMVEA 151
           A+         A       A K K  + V+ 
Sbjct: 118 AKQASKKTAMAAAKAPTKAAPKQKIVKPVKV 148

>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T Length = 158

 Score =  120 bits (302), Expect = 3e-35
 Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 3/151 (1%)

Query: 1   MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
           +R  TC FC  +IYPG G +F+  D + F F   K   L  RK   +K  WT A R++  
Sbjct: 3   VRTGTCSFCEYRIYPGRGQRFIAKDGRGFFFLTKKAKCLSLRKVKAQKITWTIARRRLWK 62

Query: 61  KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
           K  A D +    K++   +   R     ++E I + +++    +     + +R+ ++ + 
Sbjct: 63  KVKATDIA---QKKKKRNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKA 119

Query: 121 ARDIKAVQRDIAILNDPTEAIKAKKKRMVEA 151
               K          D   A KA+ K+  + 
Sbjct: 120 NDIEKKRADRKLQGKDVKAAKKAETKKTKQP 150

>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ... Length = 66

 Score =  106 bits (265), Expect = 7e-31
 Identities = 20/62 (32%), Positives = 24/62 (38%)

Query: 2  RIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGK 61
          R   C +C + I PG G  FV  D     FC SKC       +  R   WT   R   G+
Sbjct: 2  RTRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAGE 61

Query: 62 DL 63
            
Sbjct: 62 AE 63

>3jyw_S 60S ribosomal protein L24(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} Length = 45

 Score = 87.8 bits (218), Expect = 6e-24
 Identities = 28/45 (62%), Positives = 32/45 (71%)

Query: 8  FCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWT 52
          F  +KIYPG G  FVR D KIFRF  SK   LFK++KNPR+ AWT
Sbjct: 1  FSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWT 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	186
3izc_Z	155	60S ribosomal protein RPL24 (L24E); eukaryotic rib	100.0
4a17_T	158	RPL24, 60S ribosomal protein L21; eukaryotic ribos	100.0
2zkr_u	157	60S ribosomal protein L24; protein-RNA complex, 60	100.0
3iz5_Z	162	60S ribosomal protein L24 (L24E); eukaryotic ribos	100.0
1vq8_U	66	50S ribosomal protein L24E; ribosome 50S, protein-	100.0
3j21_V	66	50S ribosomal protein L24E; archaea, archaeal, KIN	100.0
3jyw_S	45	60S ribosomal protein L24(A); eukaryotic ribosome,	99.96
2hpu_A	175	NOSL protein; alpha beta topology, metal transport	95.44
1mty_D	512	Methane monooxygenase hydroxylase; dinuclear iron	91.65
3u52_A	511	Phenol hydroxylase component PHN; 4-helix bundle,	89.62
2l8e_A	49	Polyhomeotic-like protein 1; DNA binding protein;	88.97
3ge3_A	500	Toluene-4-monooxygenase system protein A; DIIRON h	85.1
1zfo_A	31	LAsp-1; LIM domain, zinc-finger, metal-binding pro	83.13

>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T

Probab=100.00  E-value=3.3e-46  Score=304.04  Aligned_cols=98  Identities=31%  Similarity=0.493  Sum_probs=59.7

Q ss_pred             CceeecccCCCCccCCccceEEeeCCceeEEechhHHHhhhcccCCccchhhHHHHHHhCCcccccchhhhhhhhCCccc
Q psy4931           1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLK   80 (186)
Q Consensus         1 Mr~e~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f~~KrnPRKl~WT~~~Rr~~kKe~~~d~~~efekRRn~~vK   80 (186)
                      |++++|+|||++||||||+|||||||+||+||||||++||++++|||+|+||.+||++|+|++++|++   ++|+|+||+
T Consensus         3 mk~~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~~yRr~~kK~~~~e~~---kkr~~r~vK   79 (158)
T 4a17_T            3 VRTGTCSFCEYRIYPGRGQRFIAKDGRGFFFLTKKAKCLSLRKVKAQKITWTIARRRLWKKVKATDIA---QKKKKRNVT   79 (158)
T ss_dssp             CCCEECTTTCCEECTTCCEEEECTTSCEEEESCHHHHHHHHHTCCGGGSTTSHHHHHHHC--------------------
T ss_pred             eEEEEecCcCCcccCCCCeEEEeeCCceEEEEcHHHHHHHHcccCcccchhHHHHHHHhCCcchHHHH---HHHhcCCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999865   678899999


Q ss_pred             chhhHHHHhHHHHHhHHHHHHHHHHHH
Q psy4931          81 YDREFWNKTVEAIKKVEHIKTKRQNLY  107 (186)
Q Consensus        81 y~R~lv~~tl~amkrve~Ik~kR~~~~  107 (186)
                      |||+|||+||      ++|+++|++..
T Consensus        80 ~~R~ivg~sl------~~I~~kR~qkp  100 (158)
T 4a17_T           80 VARAIVGISL------EEINRRKNLDA  100 (158)
T ss_dssp             ---------------------------
T ss_pred             cchhhhhhhH------HHHHHHHccCH
Confidence            9999999998      77778887753

>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=3.7e-46  Score=303.53  Aligned_cols=97  Identities=37%  Similarity=0.723  Sum_probs=53.0

Q ss_pred             CceeecccCCCCccCCccceEEeeCCceeEEechhHHHhhhcccCCccchhhHHHHHHhCCcccccchhhhhhhhC-Ccc
Q psy4931           1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRN-VPL   79 (186)
Q Consensus         1 Mr~e~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f~~KrnPRKl~WT~~~Rr~~kKe~~~d~~~efekRRn-~~v   79 (186)
                      |++++|+|||++||||||+|||||||+||+||||||++||++++|||+|+||.+||++|||++++    +|+++|+ +||
T Consensus         1 Mk~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~f~~krnPRKl~WT~~yRr~~kK~~~~----e~~KkR~r~~v   76 (157)
T 2zkr_u            1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSE----EIQKKRTRRAV   76 (157)
T ss_dssp             ---CBCTTTCCBCCTTCCEEEECTTSCEEEESSHHHHHHHHTTCCTTTCTTCSTTC------------------------
T ss_pred             CCeeeecCcCCcccCCCceEEEeeCCcEEEEecHHHHHHHHccCCcccchhHHHHHHHhcchHHH----HHHHHHhcCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999976    5788886 799


Q ss_pred             cchhhHHHHhHHHHHhHHHHHHHHHHHH
Q psy4931          80 KYDREFWNKTVEAIKKVEHIKTKRQNLY  107 (186)
Q Consensus        80 Ky~R~lv~~tl~amkrve~Ik~kR~~~~  107 (186)
                      +|||+|||+||      ++|+++|++..
T Consensus        77 K~~R~ivg~sl------~~I~~kR~qkp   98 (157)
T 2zkr_u           77 KFQRAITGASL------ADIMAKRNQKP   98 (157)
T ss_dssp             ----------------------------
T ss_pred             ceeHHHHHhhH------HHHHHHHccCH
Confidence            99999999998      77888888754

>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...

Probab=100.00  E-value=3.3e-39  Score=230.61  Aligned_cols=65  Identities=31%  Similarity=0.603  Sum_probs=53.0

Q ss_pred             CceeecccCCCCccCCccceEEeeCCceeEEechhHHHhhhcccCCccchhhHHHHHHhCCcccc
Q psy4931           1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAV   65 (186)
Q Consensus         1 Mr~e~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f~~KrnPRKl~WT~~~Rr~~kKe~~~   65 (186)
                      |++++|+|||++||||||+|||||||+||+||||||++||+++||||+|+||++||++|||++++
T Consensus         1 mk~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKc~k~f~~krnPRkl~WT~~yRr~~kK~~~~   65 (66)
T 1vq8_U            1 PRTRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAGEAEDE   65 (66)
T ss_dssp             ---CBCTTTCCBCCSSCCEEEECTTSCEEEESCHHHHHHHHTTCCGGGCTTSTTTC---------
T ss_pred             CCeeEecCcCCcccCCCceEEEeeCCcEEEEECHHHHHHHHcccCcccchhHHHHHHHhcccccc
Confidence            89999999999999999999999999999999999999999999999999999999999999763

>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=7.2e-36  Score=213.34  Aligned_cols=59  Identities=41%  Similarity=0.915  Sum_probs=57.6

Q ss_pred             CceeecccCCCCccCCccceEEeeCCceeEEechhHHHhhhcccCCccchhhHHHHHHh
Q psy4931           1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVR   59 (186)
Q Consensus         1 Mr~e~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f~~KrnPRKl~WT~~~Rr~~   59 (186)
                      |++++|+|||++||||||+|||||||+||+||||||++||++|||||+|+||++||++.
T Consensus         2 ~~~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~~yRk~~   60 (66)
T 3j21_V            2 ARWNVCSYCGKPFEPGTGKMYVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTKAYQEAR   60 (66)
T ss_dssp             CCCCBCTTTCSBCCTTCCEEEECSSSCEEEESSHHHHHHHHTTCCTTTCSSSHHHHHHH
T ss_pred             CceeEecCcCCcccCCCCeEEEecCCcEEEEECHHHHHHHHcCCCcccchHHHHHHHHh
Confidence            69999999999999999999999999999999999999999999999999999999975

>3jyw_S 60S ribosomal protein L24(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=99.96  E-value=2.5e-30  Score=172.73  Aligned_cols=45  Identities=62%  Similarity=1.114  Sum_probs=44.7

Q ss_pred             cCCCCccCCccceEEeeCCceeEEechhHHHhhhcccCCccchhh
Q psy4931           8 FCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWT   52 (186)
Q Consensus         8 Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f~~KrnPRKl~WT   52 (186)
                      |||++||||||+|||||||+||+||||||++||++|||||+|+||
T Consensus         1 F~g~~IyPG~G~~~Vr~Dgkvf~FcssKc~k~~~~krnPrkl~WT   45 (45)
T 3jyw_S            1 FSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWT   45 (45)
T ss_dssp             CCCCCCCTTCCCEECTTTSCCCCCCSHHHHGGGTSCCCTTTCCCC
T ss_pred             CCCCcccCCCCeEEEecCCCEEEEECHHHHHHHHcCCCCccCccC
Confidence            899999999999999999999999999999999999999999998

>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A

Probab=95.44  E-value=0.0058  Score=49.63  Aligned_cols=41  Identities=15%  Similarity=0.265  Sum_probs=20.9

Q ss_pred             eeecccCCCCc--cCCc-cceEEeeCCceeEEechhHHHhhhcc
Q psy4931           3 IETCYFCSSKI--YPGH-GIQFVRNDCKIFRFCRSKCHKLFKRK   43 (186)
Q Consensus         3 ~e~C~Fcg~~I--yPGh-G~~fVrnDgkvf~FcssKC~k~f~~K   43 (186)
                      ...|.+||-.|  |||. |.++..+.|++++||+-+|--+|.+.
T Consensus        18 ~~~C~~CgM~i~~~p~~~aqI~~~~~g~~~~F~s~~cm~~~~~~   61 (175)
T 2hpu_A           18 ETLGHYCQMNLLEHPGPKAQIFLEGSPAPLFFSQVRDAIAYARG   61 (175)
T ss_dssp             -----------------CEEEEETTCSSEEEESCHHHHHHHHTT
T ss_pred             CceeCCCCcCcccCCCccEEEEECCCCcEEEECCHHHHHHHHhc
Confidence            46899999998  4676 66666665999999999998887654

>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A 1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A 1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ...

Probab=91.65  E-value=0.12  Score=48.37  Aligned_cols=54  Identities=11%  Similarity=0.207  Sum_probs=42.3

Q ss_pred             eecccCCCCc----cCCccceEE-eeCCceeEEechhHHHhhhcccCCccc----hhhHHHHHHhCCcc
Q psy4931           4 ETCYFCSSKI----YPGHGIQFV-RNDCKIFRFCRSKCHKLFKRKKNPRKT----AWTKAYRKVRGKDL   63 (186)
Q Consensus         4 e~C~Fcg~~I----yPGhG~~fV-rnDgkvf~FcssKC~k~f~~KrnPRKl----~WT~~~Rr~~kKe~   63 (186)
                      ..|..|+-|+    .||....++ --+|+.|+|||.-|...|.  .||-+.    -|+   | .+|-++
T Consensus       402 ~~c~vC~~p~~~~~~~~~~~~~~~~y~G~~y~FCs~~Ck~~F~--~~PerY~~~~~~~---~-~~G~~l  464 (512)
T 1mty_D          402 YIDRVSQVPFCPSLAKGASTLRVHEYNGEMHTFSDQWGERMWL--AEPERYECQNIFE---Q-YEGREL  464 (512)
T ss_dssp             EECTTTCCEECTTTCSSCCCCEEEEETTEEEEESSHHHHHHHH--HCGGGCCCCCHHH---H-STTCBH
T ss_pred             eeCCCCCCcccccCCCCCCceeEEEECCEEEEecCHHHHHHHH--hChHHhhhcchHH---H-hcCCCH
Confidence            4799999984    457766665 6799999999999999997  788886    555   4 777543

>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_A 2inp_A

Probab=89.62  E-value=0.2  Score=46.77  Aligned_cols=56  Identities=21%  Similarity=0.529  Sum_probs=44.7

Q ss_pred             ecccCCCCc---cCCccc----eEEeeCCceeEEechhHHHhhhcccCCccc--hhhHHHHHHhCCc
Q psy4931           5 TCYFCSSKI---YPGHGI----QFVRNDCKIFRFCRSKCHKLFKRKKNPRKT--AWTKAYRKVRGKD   62 (186)
Q Consensus         5 ~C~Fcg~~I---yPGhG~----~fVrnDgkvf~FcssKC~k~f~~KrnPRKl--~WT~~~Rr~~kKe   62 (186)
                      .|.-|.-||   .||...    ..+--+|+.|+|||.-|+..|.  .||-+.  .|+..-|-+.|--
T Consensus       398 ~C~~Cq~P~~~~~~~~~~~~~~~~~~~~G~~y~fCs~~C~~~f~--~~Pe~y~~~~~~~~~~~~g~~  462 (511)
T 3u52_A          398 LCQVCQIPTIFTEKDAPTMLSHRQIEHEGERYHFCSDGCCDIFK--HEPEKYIQAWLPVHQIYQGNC  462 (511)
T ss_dssp             BCTTTCSBSCCEETTEEEEECCEEEEETTEEEEESSHHHHHHHH--HCHHHHTTCCCHHHHHHTTCS
T ss_pred             ccCCCCCcccccCCCCCCcccceeEEECCEEEEecChHHHHHHH--HCHHHHhcccChHHHHHccCC
Confidence            799999999   456533    3344589999999999999998  788776  6888888887763

>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}

Probab=88.97  E-value=0.11  Score=34.68  Aligned_cols=31  Identities=23%  Similarity=0.491  Sum_probs=24.5

Q ss_pred             eeecccCCCCccCCccceEEeeCCceeEEechhHHHhh
Q psy4931           3 IETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLF   40 (186)
Q Consensus         3 ~e~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f   40 (186)
                      +.+|-+||.+|.|..+       ++.=+|||..|.+.|
T Consensus        18 ~~~C~~CG~~i~~~~~-------~r~krFCS~sCR~~y   48 (49)
T 2l8e_A           18 LLKCEYCGKYAPAEQF-------RGSKRFCSMTCAKRY   48 (49)
T ss_dssp             EEECTTTCCEEEGGGC-------TTTSSSCSHHHHHHH
T ss_pred             CCcChhccCccccccC-------CCCCccCCHHHHhhh
Confidence            3579999999999763       333469999999876

>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: a.25.1.2 PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A 3q14_A 3q2a_A* 3q3m_A* 3q3n_A* 3q3o_A* 3rmk_A* 3ri7_A

Probab=85.10  E-value=0.64  Score=43.37  Aligned_cols=55  Identities=15%  Similarity=0.366  Sum_probs=41.5

Q ss_pred             ecccCCCCcc--CCcc----ceEEeeCCceeEEechhHHHhhhcccCCccch--hhHHHHHHhCC
Q psy4931           5 TCYFCSSKIY--PGHG----IQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTA--WTKAYRKVRGK   61 (186)
Q Consensus         5 ~C~Fcg~~Iy--PGhG----~~fVrnDgkvf~FcssKC~k~f~~KrnPRKl~--WT~~~Rr~~kK   61 (186)
                      .|.-|.-|+-  ||+.    ...+--+|+.|+|||.-|+..|.  .||-+..  |+-.-|-..|-
T Consensus       396 ~C~~CqvP~~~~~~~~~~~~~~~~~y~G~~y~fCs~~C~~~f~--~~Pe~y~~~~~~~~~~~~g~  458 (500)
T 3ge3_A          396 VCNMSQIPLVGVPGDDWNIEVFSLEHNGRLYHFGSEVDRWVFQ--QDPVQYQNHMNIVDRFLAGQ  458 (500)
T ss_dssp             BCTTTCSBCBCBCGGGCBCCCEEEEETTEEEEESSHHHHHHHH--HCHHHHTTCCCHHHHHHTTC
T ss_pred             cccccCCccccCCCCcccccceeeEECCEEEEecCHHHHHHHH--hChHHHhCCCCHHHHHHccC
Confidence            6999988885  4431    23344589999999999999998  7888773  77777766665

>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4

Probab=83.13  E-value=0.3  Score=28.91  Aligned_cols=24  Identities=21%  Similarity=0.452  Sum_probs=18.1

Q ss_pred             eeecccCCCCccCCccceEEeeCCcee
Q psy4931           3 IETCYFCSSKIYPGHGIQFVRNDCKIF   29 (186)
Q Consensus         3 ~e~C~Fcg~~IyPGhG~~fVrnDgkvf   29 (186)
                      .+.|..||..|||+.-.+   -+|++|
T Consensus         3 ~~~C~~C~k~Vy~~Ek~~---~~g~~~   26 (31)
T 1zfo_A            3 NPNCARCGKIVYPTEKVN---CLDKFW   26 (31)
T ss_dssp             CCBCSSSCSBCCGGGCCC---SSSSCC
T ss_pred             CCcCCccCCEEecceeEE---ECCeEe
Confidence            468999999999995544   356655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	186
d1vqou1	53	g.39.1.6 (U:4-56) Ribosomal protein L24e {Archaeon	4e-28

>d1vqou1 g.39.1.6 (U:4-56) Ribosomal protein L24e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 53

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Ribosomal protein L24e
domain: Ribosomal protein L24e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 97.8 bits (244), Expect = 4e-28
 Identities = 18/52 (34%), Positives = 21/52 (40%)

Query: 5  TCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYR 56
           C +C + I PG G  FV  D     FC SKC       +  R   WT   R
Sbjct: 2  ECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	186
d1vqou1	53	Ribosomal protein L24e {Archaeon Haloarcula marism	99.97

>d1vqou1 g.39.1.6 (U:4-56) Ribosomal protein L24e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Ribosomal protein L24e
domain: Ribosomal protein L24e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.97  E-value=9.9e-34  Score=193.36  Aligned_cols=53  Identities=34%  Similarity=0.735  Sum_probs=51.6

Q ss_pred             eecccCCCCccCCccceEEeeCCceeEEechhHHHhhhcccCCccchhhHHHH
Q psy4931           4 ETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYR   56 (186)
Q Consensus         4 e~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f~~KrnPRKl~WT~~~R   56 (186)
                      .+|+|||++||||||+|||++||++|+||||||+++|++|+|||+|+||++||
T Consensus         1 r~CsF~g~~I~PG~G~~~Vr~Dg~v~~F~ssKc~~~~~~krnPrk~~WT~~yR   53 (53)
T d1vqou1           1 RECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR   53 (53)
T ss_dssp             CBCTTTCCBCCTTCCEEEECTTSCEEEESCHHHHHHHHTTCCGGGCTTSTTTC
T ss_pred             CcccccCCeecCCCCEEEEecCCCEEEEeCHHHHHHHHcCCCcccceeeeccC
Confidence            37999999999999999999999999999999999999999999999999987