Psyllid ID: psy494

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
MGSQWNGMGTDLLRIPLFRQSMERLDAVLKPHGVDLFHILTSTDNTLFDNILNSFVGIAACQPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHGLLQAILKRSLAEKEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYPEVQYPVSRGTKPLGHFVDWEHGHEYKLSELEVQ
cccccHHHHHHHHcHHHHHHHHHHHHHHHccccccEEEEEcccccccHHHHHHHHHHHHcccccccccEEcccccccccccccccccHHHHHHHHHcccHHHHHHHHcccccEEEEEcccHHHHHHHHHHHcccccEEEEccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccc
ccccccHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHccccHHHHHHHHHHHHcccccccccccEEEccccHHHccccHHHcccHHHHHHccccHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHHHccccccHHHcccccccccccccccccccEcccccccccccccccc
mgsqwngmgtdllrIPLFRQSMERLDAVLKPHGVDLFHILTSTDNTLFDNILNSFVGiaacqprsskwisssiledawgsplaqtssaeyhtnnllssvffeeasahipanaicIEIAPHGLLQAILKRSLAekevvnipltlrgvkDGVKFILNSIGKLYLngldlnlaplypevqypvsrgtkplghfvdwehgheyklselevq
mgsqwngmgtdLLRIPLFRQSMERLDAVLKPHGVDLFHILTSTDNTLFDNILNSFVGIAACQPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHGLLQAILKRSLAEKEVVnipltlrgvkdgVKFILNSIGKLYLNGLDLNLAPLYPEVQYPVSRGTKPLGHFVDWEHgheyklselevq
MGSQWNGMGTDLLRIPLFRQSMERLDAVLKPHGVDLFHILTSTDNTLFDNILNSFVGIAACQPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHGLLQAILKRSLAEKEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYPEVQYPVSRGTKPLGHFVDWEHGHEYKLSELEVQ
*******MGTDLLRIPLFRQSMERLDAVLKPHGVDLFHILTSTDNTLFDNILNSFVGIAACQPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHGLLQAILKRSLAEKEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYPEVQYPVSRGTKPLGHFVDWEHGHEY********
MGSQWNGMGTDLLRIPLFRQSMERLDAVLKPHGVDLFHILTSTDNTLFDNILNSFVGIAACQPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHGLLQAILKRSLAEKEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYPEVQYPVSRGTKPLGHFVDWEHGHEYK*SELEV*
********GTDLLRIPLFRQSMERLDAVLKPHGVDLFHILTSTDNTLFDNILNSFVGIAACQPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHGLLQAILKRSLAEKEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYPEVQYPVSRGTKPLGHFVDWEHGHEYKLSELEVQ
****WNGMGTDLLRIPLFRQSMERLDAVLKPHGVDLFHILTSTDNTLFDNILNSFVGIAACQPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHGLLQAILKRSLAEKEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYPEVQYPVSRGTKPLGHFVDWEHGHEYKLSEL***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGSQWNGMGTDLLRIPLFRQSMERLDAVLKPHGVDLFHILTSTDNTLFDNILNSFVGIAACQPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHGLLQAILKRSLAEKEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYPEVQYPVSRGTKPLGHFVDWEHGHEYKLSELEVQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query207 2.2.26 [Sep-21-2011]
P12785 2505 Fatty acid synthase OS=Ra yes N/A 0.671 0.055 0.464 3e-32
P19096 2504 Fatty acid synthase OS=Mu yes N/A 0.671 0.055 0.457 2e-31
P49327 2511 Fatty acid synthase OS=Ho yes N/A 0.642 0.052 0.477 4e-31
Q71SP7 2513 Fatty acid synthase OS=Bo yes N/A 0.690 0.056 0.437 1e-30
P12276 2512 Fatty acid synthase OS=Ga yes N/A 0.690 0.056 0.437 2e-30
>sp|P12785|FAS_RAT Fatty acid synthase OS=Rattus norvegicus GN=Fasn PE=1 SV=3 Back     alignment and function desciption
 Score =  138 bits (347), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 65/140 (46%), Positives = 97/140 (69%), Gaps = 1/140 (0%)

Query: 62  QPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHG 121
           +PRS++W+S+SI E  W S LA+TSSAEY+ NNL+S V F+EA  H+P +A+ +EIAPH 
Sbjct: 706 RPRSARWLSTSIPEAQWQSSLARTSSAEYNVNNLVSPVLFQEALWHVPEHAVVLEIAPHA 765

Query: 122 LLQAILKRSLAEKEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYPEVQYPVS 181
           LLQA+LKR +     + IPL  R  KD ++F L ++GK++L G+D+N   L+P V++PV 
Sbjct: 766 LLQAVLKRGVKPSCTI-IPLMKRDHKDNLEFFLTNLGKVHLTGIDINPNALFPPVEFPVP 824

Query: 182 RGTKPLGHFVDWEHGHEYKL 201
           RGT  +   + W+H   + +
Sbjct: 825 RGTPLISPHIKWDHSQTWDI 844
Fatty acid synthetase catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. This multifunctional protein has 7 catalytic activities and an acyl carrier protein.
Rattus norvegicus (taxid: 10116)
EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: 1EC: 4
>sp|P19096|FAS_MOUSE Fatty acid synthase OS=Mus musculus GN=Fasn PE=1 SV=2 Back     alignment and function description
>sp|P49327|FAS_HUMAN Fatty acid synthase OS=Homo sapiens GN=FASN PE=1 SV=3 Back     alignment and function description
>sp|Q71SP7|FAS_BOVIN Fatty acid synthase OS=Bos taurus GN=FASN PE=2 SV=1 Back     alignment and function description
>sp|P12276|FAS_CHICK Fatty acid synthase OS=Gallus gallus GN=FASN PE=1 SV=5 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query207
328703183 2215 PREDICTED: fatty acid synthase-like [Acy 0.685 0.064 0.587 3e-41
170044457 2386 fatty acid synthase S-acetyl transferase 0.695 0.060 0.541 8e-40
157118100 2385 fatty acid synthase [Aedes aegypti] gi|1 0.695 0.060 0.547 1e-39
242005736 2175 fatty acid synthase, putative [Pediculus 0.632 0.060 0.606 8e-39
158301484 2387 AGAP001899-PA [Anopheles gambiae str. PE 0.695 0.060 0.541 2e-38
383856217 2420 PREDICTED: fatty acid synthase-like [Meg 0.652 0.055 0.580 3e-38
112984340 2422 p270 [Bombyx mori] gi|2058460|gb|AAB5325 0.719 0.061 0.533 5e-38
357614628 1625 p260 [Danaus plexippus] 0.642 0.081 0.592 7e-38
156549726 2406 PREDICTED: fatty acid synthase-like [Nas 0.690 0.059 0.541 9e-38
91078002 2153 PREDICTED: similar to p270 [Tribolium ca 0.676 0.065 0.571 2e-37
>gi|328703183|ref|XP_001944653.2| PREDICTED: fatty acid synthase-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 84/143 (58%), Positives = 103/143 (72%), Gaps = 1/143 (0%)

Query: 62  QPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHG 121
           +PRSSKW+SSS+ E  WG+ +A+ SS EYHTNNLL  V FEEAS HIP +AI IEIAPHG
Sbjct: 717 KPRSSKWVSSSVPESEWGNEVAKYSSPEYHTNNLLGQVLFEEASRHIPEDAIVIEIAPHG 776

Query: 122 LLQAILKRSLAEKEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYPEVQYPVS 181
           LLQAILKRSL EK V NIPLT R  KD VKF+L++ GK+Y NG+  N+   YP + YPVS
Sbjct: 777 LLQAILKRSLPEK-VTNIPLTHRSTKDSVKFLLSAFGKMYNNGMTPNIEAFYPSINYPVS 835

Query: 182 RGTKPLGHFVDWEHGHEYKLSEL 204
           R T+ L     W+H  ++ +  L
Sbjct: 836 RQTQALHSIFPWDHKEDWAIKSL 858

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|170044457|ref|XP_001849863.1| fatty acid synthase S-acetyl transferase [Culex quinquefasciatus] gi|167867603|gb|EDS30986.1| fatty acid synthase S-acetyl transferase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|157118100|ref|XP_001659008.1| fatty acid synthase [Aedes aegypti] gi|108875860|gb|EAT40085.1| AAEL008160-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|242005736|ref|XP_002423718.1| fatty acid synthase, putative [Pediculus humanus corporis] gi|212506903|gb|EEB10980.1| fatty acid synthase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|158301484|ref|XP_321166.4| AGAP001899-PA [Anopheles gambiae str. PEST] gi|157012493|gb|EAA01044.4| AGAP001899-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|383856217|ref|XP_003703606.1| PREDICTED: fatty acid synthase-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|112984340|ref|NP_001037478.1| p270 [Bombyx mori] gi|2058460|gb|AAB53258.1| p270 [Bombyx mori] Back     alignment and taxonomy information
>gi|357614628|gb|EHJ69181.1| p260 [Danaus plexippus] Back     alignment and taxonomy information
>gi|156549726|ref|XP_001605700.1| PREDICTED: fatty acid synthase-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|91078002|ref|XP_969531.1| PREDICTED: similar to p270 [Tribolium castaneum] gi|270001419|gb|EEZ97866.1| hypothetical protein TcasGA2_TC000238 [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query207
FB|FBgn0040001 2394 CG17374 [Drosophila melanogast 0.685 0.059 0.465 3.4e-45
FB|FBgn0027571 2544 CG3523 [Drosophila melanogaste 0.671 0.054 0.478 7.3e-44
RGD|620665 2505 Fasn "fatty acid synthase" [Ra 0.690 0.057 0.458 2.3e-43
UNIPROTKB|P12785 2505 Fasn "Fatty acid synthase" [Ra 0.690 0.057 0.458 2.3e-43
ZFIN|ZDB-GENE-030131-7802 2514 fasn "fatty acid synthase" [Da 0.705 0.058 0.476 2.9e-43
MGI|MGI:95485 2504 Fasn "fatty acid synthase" [Mu 0.690 0.057 0.451 7e-42
UNIPROTKB|P49327 2511 FASN "Fatty acid synthase" [Ho 0.642 0.052 0.477 7.1e-42
UNIPROTKB|F1N647 2512 FASN "Fatty acid synthase" [Bo 0.690 0.056 0.437 1e-40
UNIPROTKB|Q71SP7 2513 FASN "Fatty acid synthase" [Bo 0.690 0.056 0.437 1e-40
UNIPROTKB|E1BWG0 2446 FASN "Fatty acid synthase" [Ga 0.690 0.058 0.437 1.2e-40
FB|FBgn0040001 CG17374 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 347 (127.2 bits), Expect = 3.4e-45, Sum P(2) = 3.4e-45
 Identities = 67/144 (46%), Positives = 99/144 (68%)

Query:    62 QPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHG 121
             +PR+ KW+S+S+ +  W    A+  SAEYHTNNLL+SV F+E  + IP N++ IE+APHG
Sbjct:   730 KPRTKKWLSTSVPKIDWNKDKAKFCSAEYHTNNLLNSVLFDETFSLIPKNSLTIEVAPHG 789

Query:   122 LLQAILKRSLAEKEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYPEVQYPVS 181
             LL AILKRS+     V+IPLT RG ++   F L+++GK+YLNG+ L  A LY  +Q+PVS
Sbjct:   790 LLGAILKRSMPSG--VHIPLTNRGNQNNASFFLSALGKIYLNGVLLPAANLYERIQFPVS 847

Query:   182 RGTKPLGHFVDWEHGHEYKLSELE 205
             R T  +   + W+H  ++ +++ E
Sbjct:   848 RTTPSVSSLIRWDHSEDWFVTKYE 871
GO:0004312 "fatty acid synthase activity" evidence=ISS
GO:0006633 "fatty acid biosynthetic process" evidence=ISS
GO:0005835 "fatty acid synthase complex" evidence=ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0000166 "nucleotide binding" evidence=IEA
GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
FB|FBgn0027571 CG3523 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|620665 Fasn "fatty acid synthase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P12785 Fasn "Fatty acid synthase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-7802 fasn "fatty acid synthase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:95485 Fasn "fatty acid synthase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P49327 FASN "Fatty acid synthase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1N647 FASN "Fatty acid synthase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q71SP7 FASN "Fatty acid synthase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1BWG0 FASN "Fatty acid synthase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.1LOW CONFIDENCE prediction!
3rd Layer2.3.1.39LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query207
pfam00698 319 pfam00698, Acyl_transf_1, Acyl transferase domain 2e-10
pfam00698319 pfam00698, Acyl_transf_1, Acyl transferase domain 3e-10
smart00827298 smart00827, PKS_AT, Acyl transferase domain in pol 2e-08
COG3321 1061 COG3321, COG3321, Polyketide synthase modules and 8e-05
smart00827298 smart00827, PKS_AT, Acyl transferase domain in pol 0.001
>gnl|CDD|144338 pfam00698, Acyl_transf_1, Acyl transferase domain Back     alignment and domain information 
 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 1  MGSQWNGMGTDLLR-IPLFRQSMERLDAVLKPH-GVDLFHILTSTDNTLFDNILNSFVGI 58
           GSQW GMG DLL+  P+F  ++ R D   KP  G  +  +L +    L + +      +
Sbjct: 7  QGSQWAGMGMDLLKTSPVFAAAIARCDEAFKPQYGFSVLDVLRNNPEGLLERVDVVQPAL 66

Query: 59 AACQ 62
           A Q
Sbjct: 67 FAMQ 70

Length = 319
>gnl|CDD|144338 pfam00698, Acyl_transf_1, Acyl transferase domain Back     alignment and domain information
>gnl|CDD|214838 smart00827, PKS_AT, Acyl transferase domain in polyketide synthase (PKS) enzymes Back     alignment and domain information
>gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|214838 smart00827, PKS_AT, Acyl transferase domain in polyketide synthase (PKS) enzymes Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 207
KOG1202|consensus 2376 99.97
PF00698318 Acyl_transf_1: Acyl transferase domain; InterPro: 99.96
COG3321 1061 Polyketide synthase modules and related proteins [ 99.91
TIGR02816538 pfaB_fam PfaB family protein. The protein PfaB is 99.9
TIGR02813 2582 omega_3_PfaA polyketide-type polyunsaturated fatty 99.89
smart00827298 PKS_AT Acyl transferase domain in polyketide synth 99.81
TIGR00128290 fabD malonyl CoA-acyl carrier protein transacylase 99.77
COG0331310 FabD (acyl-carrier-protein) S-malonyltransferase [ 99.75
PLN02752343 [acyl-carrier protein] S-malonyltransferase 99.74
TIGR03131295 malonate_mdcH malonate decarboxylase, epsilon subu 99.72
KOG2926|consensus386 99.61
>KOG1202|consensus Back     alignment and domain information 
Probab=99.97  E-value=5.2e-30  Score=225.26  Aligned_cols=204  Identities=50%  Similarity=0.946  Sum_probs=187.8

Q ss_pred             CCCchhhHHHHhhccHHHHHHHHHHHHhhccCCCChhhhhcccCchhhhhhHhhhhhhhh--------------------
Q psy494            1 MGSQWNGMGTDLLRIPLFRQSMERLDAVLKPHGVDLFHILTSTDNTLFDNILNSFVGIAA--------------------   60 (207)
Q Consensus         1 ~GsQ~~gMg~~L~~~~~fr~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~q~~l~~~~--------------------   60 (207)
                      |||||+||+++|...+.||+.+.+|++++++.|+|+.++|...++..++++++..++++.                    
T Consensus       508 MGsQW~~Ma~~LMkl~~F~dsi~~~ae~l~~~gldv~~vL~~s~~~tfdn~l~sfvsitAiQiaLtDlLs~lgi~PDGIv  587 (2376)
T KOG1202|consen  508 MGSQWAGMAKDLMKLERFRDSIQRSAEVLKPFGLDVIDVLTRSDESTFDNILNSFVSITAIQIALTDLLSCLGIRPDGIV  587 (2376)
T ss_pred             CcchhhHHHHHHhhhHHHHHHHHHHHhhhcccCcchhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Confidence            899999999999999999999999999999999999999999988888888666654433                    


Q ss_pred             ---------------------------------------------------------------c----------------
Q psy494           61 ---------------------------------------------------------------C----------------   61 (207)
Q Consensus        61 ---------------------------------------------------------------c----------------   61 (207)
                                                                                     |                
T Consensus       588 GHS~GElgc~YaDGclt~EqtvlaAYwRG~sild~~l~kGaMAAVGLsWEq~~~~~P~~~~paCHNs~D~~TiSGp~a~v  667 (2376)
T KOG1202|consen  588 GHSLGELGCGYADGCLTQEQTVLAAYWRGQSILDTHLPKGAMAAVGLSWEQCKSRCPPDVVPACHNSKDNVTISGPQASV  667 (2376)
T ss_pred             ccccchhcccccccccCHHHHHHHHHHcCceeccccCCCcchhhhcCCHHHHhccCCCcccccccCCCCceEecCChHHH
Confidence                                                                           1                


Q ss_pred             -----------------------------------------------ccCCCCceecccccCCCCCCCCCCCChHHHHHh
Q psy494           62 -----------------------------------------------QPRSSKWISSSILEDAWGSPLAQTSSAEYHTNN   94 (207)
Q Consensus        62 -----------------------------------------------~~~~~~~~~s~vt~~~~~~~~~~~~~~~y~~~~   94 (207)
                                                                     .+.+..|+++++....|.++.+....++|..+|
T Consensus       668 ~~~v~qL~~~gvFak~V~t~G~aFHS~~m~a~~p~l~~~l~k~i~epK~rsarWlSTSipEa~W~s~la~tsSA~Y~vnN  747 (2376)
T KOG1202|consen  668 FAFVEQLRAEGVFAKEVRTGGYAFHSPYMEAAAPPLRQSLEKVIPEPKPRSARWLSTSIPEAQWHSSLARTSSAEYHVNN  747 (2376)
T ss_pred             HHHHHHhhhcCeeeeEecCCCccccCHHHHhhChHHHHHHHHhcCCCCCcccchhhccCChhhhcChhhhhcchhhhhhc
Confidence                                                           455668999999999998887878899999999


Q ss_pred             cccceeHHHHHhhccCCcEEEEeCCchhHHHHHHHHhcccccccccccccCCcChHHHHHHHHHHHHHcCCCCCCccCCC
Q psy494           95 LLSSVFFEEASAHIPANAICIEIAPHGLLQAILKRSLAEKEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYP  174 (207)
Q Consensus        95 l~~pV~f~~~i~~l~~~~~~lEiGp~~~L~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~l~~L~~~G~~vdw~~~~~  174 (207)
                      +.+||.|.++++.+.++.+.|||.||+-+...+|+.+ .+.+..++.+++++.+..+.|+..+++||.+|+.++-..+|+
T Consensus       748 l~SPVLF~eAlq~vP~nAv~vEiAPH~LlqAiLkRsL-~p~~t~v~Lmkr~h~~NlEffL~~lgrly~aG~~~qi~~l~p  826 (2376)
T KOG1202|consen  748 LVSPVLFHEALQHVPENAVVVEIAPHGLLQAILKRSL-KPSCTNVSLMKRGHRNNLEFFLAGLGRLYAAGIQPQILALFP  826 (2376)
T ss_pred             cccHHHHHHHHHhCcccceEEEecchHHHHHHHHhhc-CCccceehhhcCcccccHHHHHHHHHHHHHccCCccceeccC
Confidence            9999999999999999999999999999999999987 678899999999987889999999999999999999999999


Q ss_pred             CCcCCCCCCCCCCCCcccCCCCCcccCcccc
Q psy494          175 EVQYPVSRGTKPLGHFVDWEHGHEYKLSELE  205 (207)
Q Consensus       175 ~~~~~~~~~~~~~lP~y~f~~~~~w~~~~~~  205 (207)
                      +..+|++||+|++-|..-|+|+.-|+.+++.
T Consensus       827 ~i~ypv~rGTPmi~~lv~WDHtq~W~~~~f~  857 (2376)
T KOG1202|consen  827 PIEYPVPRGTPMIGPLVKWDHTQKWLVPKFP  857 (2376)
T ss_pred             CCcccCCCCCcCcccccCccccccccccccC
Confidence            9999999999999999999999999988764

>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2 Back     alignment and domain information
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>TIGR02816 pfaB_fam PfaB family protein Back     alignment and domain information
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA Back     alignment and domain information
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes Back     alignment and domain information
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase Back     alignment and domain information
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism] Back     alignment and domain information
>PLN02752 [acyl-carrier protein] S-malonyltransferase Back     alignment and domain information
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit Back     alignment and domain information
>KOG2926|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query207
3hhd_A 965 Structure Of The Human Fatty Acid Synthase Ks-Mat D 4e-32
2vz8_A 2512 Crystal Structure Of Mammalian Fatty Acid Synthase 4e-32
2jfk_A433 Structure Of The Mat Domain Of Human Fas With Malon 3e-30
2jfd_A425 Structure Of The Mat Domain Of Human Fas Length = 4 2e-28
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain As A Framework For Inhibitor Design. Length = 965 Back     alignment and structure 
Iteration: 1

 Score =  134 bits (336), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 64/134 (47%), Positives = 93/134 (69%), Gaps = 1/134 (0%)
Query: 62  QPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHG 121
           +PRS++W+S+SI E  W S LA+TSSAEY+ NNL+S V F+EA  H+P +A+ +EIAPH 
Sbjct: 708 KPRSARWLSTSIPEAQWHSSLARTSSAEYNVNNLVSPVLFQEALWHVPEHAVVLEIAPHA 767
Query: 122 LLQAILKRSLAEKEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYPEVQYPVS 181
           LLQA+LKR L     + IPL  +  +D ++F L  IG+L+L+G+D N   L+P V++P  
Sbjct: 768 LLQAVLKRGLKPSCTI-IPLMKKDHRDNLEFFLAGIGRLHLSGIDANPNALFPPVEFPAP 826
Query: 182 RGTKPLGHFVDWEH 195
           RGT  +   + W+H
Sbjct: 827 RGTPLISPLIKWDH 840
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase Length = 2512 Back     alignment and structure
>pdb|2JFK|A Chain A, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa Length = 433 Back     alignment and structure
>pdb|2JFD|A Chain A, Structure Of The Mat Domain Of Human Fas Length = 425 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query207
3hhd_A 965 Fatty acid synthase; transferase, multienzyme, meg 3e-38
3hhd_A 965 Fatty acid synthase; transferase, multienzyme, meg 7e-19
2vz8_A 2512 Fatty acid synthase; transferase, phosphopantethei 4e-37
2vz8_A 2512 Fatty acid synthase; transferase, phosphopantethei 3e-18
2qo3_A 915 Eryaii erythromycin polyketide synthase modules 3; 2e-05
2qo3_A915 Eryaii erythromycin polyketide synthase modules 3; 1e-04
2hg4_A 917 DEBS, 6-deoxyerythronolide B synthase; ketosynthas 2e-05
2hg4_A917 DEBS, 6-deoxyerythronolide B synthase; ketosynthas 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
2qc3_A303 MCT, malonyl COA-acyl carrier protein transacylase 3e-04
1nm2_A317 Malonyl COA:acyl carrier protein malonyltransfera; 3e-04
4amm_A401 DYNE8; transferase; 1.40A {Micromonospora chersina 4e-04
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Length = 965 Back     alignment and structure
 Score =  139 bits (352), Expect = 3e-38
 Identities = 65/150 (43%), Positives = 95/150 (63%), Gaps = 2/150 (1%)

Query: 49  DNILNSFVGIAAC-QPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAH 107
             +L     +    +PRS++W+S+SI E  W S LA+TSSAEY+ NNL+S V F+EA  H
Sbjct: 694 PPLLQELKKVIREPKPRSARWLSTSIPEAQWHSSLARTSSAEYNVNNLVSPVLFQEALWH 753

Query: 108 IPANAICIEIAPHGLLQAILKRSLAEKEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDL 167
           +P +A+ +EIAPH LLQA+LKR L       IPL  +  +D ++F L  IG+L+L+G+D 
Sbjct: 754 VPEHAVVLEIAPHALLQAVLKRGLKP-SCTIIPLMKKDHRDNLEFFLAGIGRLHLSGIDA 812

Query: 168 NLAPLYPEVQYPVSRGTKPLGHFVDWEHGH 197
           N   L+P V++P  RGT  +   + W+H  
Sbjct: 813 NPNALFPPVEFPAPRGTPLISPLIKWDHSL 842
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Length = 965 Back     alignment and structure
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512 Back     alignment and structure
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512 Back     alignment and structure
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} Length = 915 Back     alignment and structure
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} Length = 915 Back     alignment and structure
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} Length = 917 Back     alignment and structure
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} Length = 917 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase; malonyl-COA:ACP transacylase, , nucleophili fatty acids biosynthesis; 2.30A {Mycobacterium tuberculosis} PDB: 2qj3_A Length = 303 Back     alignment and structure
>1nm2_A Malonyl COA:acyl carrier protein malonyltransfera; alpha/beta hydrolase-like core; 2.00A {Streptomyces coelicolor} SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B Length = 317 Back     alignment and structure
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A 4amp_A 4amo_A Length = 401 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query207
3tzy_A491 Polyketide synthase PKS13; acyltransferase, long f 100.0
2qo3_A915 Eryaii erythromycin polyketide synthase modules 3; 100.0
3hhd_A 965 Fatty acid synthase; transferase, multienzyme, meg 100.0
2hg4_A917 DEBS, 6-deoxyerythronolide B synthase; ketosynthas 100.0
2vz8_A 2512 Fatty acid synthase; transferase, phosphopantethei 100.0
3ptw_A336 Malonyl COA-acyl carrier protein transacylase; str 99.96
4amm_A401 DYNE8; transferase; 1.40A {Micromonospora chersina 99.92
3ezo_A318 Malonyl COA-acyl carrier protein transacylase; ssg 99.91
2h1y_A321 Malonyl coenzyme A-acyl carrier protein transacyl; 99.91
3qat_A318 Malonyl COA-acyl carrier protein transacylase; sea 99.9
3k89_A314 Malonyl COA-ACP transacylase; bacterial blight, XO 99.9
3tqe_A316 Malonyl-COA-[acyl-carrier-protein] transacylase; f 99.9
3im8_A307 Malonyl acyl carrier protein transacylase; fatty a 99.9
3im9_A316 MCAT, MCT, malonyl COA-acyl carrier protein transa 99.89
2cuy_A305 Malonyl COA-[acyl carrier protein] transacylase; t 99.88
1mla_A309 Malonyl-coenzyme A acyl carrier protein transacyla 99.88
1nm2_A317 Malonyl COA:acyl carrier protein malonyltransfera; 99.87
2qc3_A303 MCT, malonyl COA-acyl carrier protein transacylase 99.87
3sbm_A281 DISD protein, DSZD; transferase; HET: P6G; 1.35A { 99.86
2c2n_A339 Malonyl COA-acyl carrier protein transacylase; fat 99.85
3g87_A394 Malonyl COA-acyl carrier protein transacylase; ssg 99.83
3zen_D 3089 Fatty acid synthase; transferase, mycolic acid bio 99.6
2uv8_G 2051 Fatty acid synthase subunit beta (FAS1); fatty aci 99.51
3zen_D 3089 Fatty acid synthase; transferase, mycolic acid bio 99.41
2uva_G 2060 Fatty acid synthase beta subunits; fungal, dehydra 99.33
2uv8_G 2051 Fatty acid synthase subunit beta (FAS1); fatty aci 98.62
2uva_G 2060 Fatty acid synthase beta subunits; fungal, dehydra 98.56
2uv8_A 1887 Fatty acid synthase subunit alpha (FAS2); fatty ac 97.66
2uv9_A 1878 Fatty acid synthase alpha subunits; fungal, dehydr 94.98
>3tzy_A Polyketide synthase PKS13; acyltransferase, long fatty acid chain transferase, acyl CAR protein, transferase; HET: PLM; 2.20A {Mycobacterium tuberculosis} PDB: 3tzw_A 3tzx_A* 3tzz_A* Back     alignment and structure
Probab=100.00  E-value=2.8e-38  Score=267.87  Aligned_cols=188  Identities=20%  Similarity=0.310  Sum_probs=156.1

Q ss_pred             CCCchhhHHHHhh-ccHHHHHHHHHHHHhhccC-CCChhhhhcccCchhhhhhHhhhhhhhh------------------
Q psy494            1 MGSQWNGMGTDLL-RIPLFRQSMERLDAVLKPH-GVDLFHILTSTDNTLFDNILNSFVGIAA------------------   60 (207)
Q Consensus         1 ~GsQ~~gMg~~L~-~~~~fr~~~~~~~~~l~~~-g~~l~~~l~~~~~~~~~~~~q~~l~~~~------------------   60 (207)
                      +||||+|||++|| ++|+||+.+++|+++++++ |+++.++++.+......+..||++ |++                  
T Consensus       148 QGsQ~~gMG~~L~~~~p~fr~~~~~~~~~l~~~~~~sl~~~l~~~~~~~~~~~~Qpal-fa~q~Al~~ll~~~Gv~P~av  226 (491)
T 3tzy_A          148 FGAQHRKMGKSLYLRNEVFAAWIEKVDALVQDELGYSVLELILDDAQDYGIETTQVTI-FAIQIALGELLRHHGAKPAAV  226 (491)
T ss_dssp             TTTCCTTTTHHHHHHCHHHHHHHHHHHHHHHHHHSSCHHHHHHCTTCCCCHHHHHHHH-HHHHHHHHHHHHHTTCCCSEE
T ss_pred             CCcchhhhHHHHhhcCHHHHHHHHHHHHHhhhhhchhHHHHhcCCchhhhhHHHHHHH-HHHHHHHHHHHHHcCCCcceE
Confidence            5999999999999 9999999999999999999 999999998776554445589888 555                  


Q ss_pred             -----------------------------------------------------------------------c--------
Q psy494           61 -----------------------------------------------------------------------C--------   61 (207)
Q Consensus        61 -----------------------------------------------------------------------c--------   61 (207)
                                                                                             |        
T Consensus       227 ~GHS~GE~aAa~~AG~lsleda~~lv~~Rg~lm~~~~~~~~g~m~~~ma~v~~~~~~v~~~~~~~~~v~iA~~NsP~~~V  306 (491)
T 3tzy_A          227 IGQSLGEAASAYFAGGLSLRDATRAICSRSHLMGEGEAMLFGEYIRLMALVEYSADEIREVFSDFPDLEVCVYAAPTQTV  306 (491)
T ss_dssp             EECGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTCCGGGCCEEEEESCCHHHHHHHGGGCTTCEEEEEEETTEEE
T ss_pred             eecCHhHHHHHHHcCCchhhhhhhhhhhhhhhhhhccccCCCcchhhhhhccchHHHHHhhhcccccceeeeecCCCcEE
Confidence                                                                                   0        


Q ss_pred             ---------------------------------------------------ccCCCCceecccccCCCCCCC-CCCCChH
Q psy494           62 ---------------------------------------------------QPRSSKWISSSILEDAWGSPL-AQTSSAE   89 (207)
Q Consensus        62 ---------------------------------------------------~~~~~~~~~s~vt~~~~~~~~-~~~~~~~   89 (207)
                                                                         ...+.++++|++++..+..+. ....+++
T Consensus       307 iSG~~~ai~~~~~~l~~~g~~~~~L~V~~AfHS~~m~~~~~~~~~~l~~i~~~~p~ip~~S~vt~~~~~~~~~~~~~~~~  386 (491)
T 3tzy_A          307 IGGPPEQVDAILARAEAEGKFARKFATKGASHTSQMDPLLGELTAELQGIKPTSPTCGIFSTVHEGRYIKPGGEPIHDVE  386 (491)
T ss_dssp             EEECHHHHHHHHHHHHHHTCCEEEESCSSCTTSGGGGGGHHHHHHHTTTCCCCCCSSEEEETTTTTEEECTTCCCCCSHH
T ss_pred             eCCcHHHHHHHHHHHHhcCceEEecccccCCcchhhhhhHHHHHHHHhcCCCCCCCccEEEeccCCcccCCCcchhcCHH
Confidence                                                               456678899999887764432 3456899


Q ss_pred             HHHHhcccceeHHHHHhhccCC--cEEEEeCCchhHHHHHHHHhcc---cccccccccccCCcChHHHHHHHHHHHHHcC
Q psy494           90 YHTNNLLSSVFFEEASAHIPAN--AICIEIAPHGLLQAILKRSLAE---KEVVNIPLTLRGVKDGVKFILNSIGKLYLNG  164 (207)
Q Consensus        90 y~~~~l~~pV~f~~~i~~l~~~--~~~lEiGp~~~L~~~~~~~~~~---~~~~~~~s~~~~~~~~~~~~~~~l~~L~~~G  164 (207)
                      ||++|+++||+|.++++.+.+.  ++|||||||++|++++++++.+   .+..++++++++. +++.++++++++||++|
T Consensus       387 yw~~~l~~pV~F~~av~~l~~~g~~~fvEiGP~~vL~~~i~~~l~~~~~~~~~~~~~l~r~~-~~~~~ll~al~~L~~~G  465 (491)
T 3tzy_A          387 YWKKGLRHSVYFTHGIRNAVDSGHTTFLELAPNPVALMQVALTTADAGLHDAQLIPTLARKQ-DEVSSMVSTMAQLYVYG  465 (491)
T ss_dssp             HHHHHHHSCBCHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTCTTCEEECCCCTTS-CHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhhccccHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHHHhhhcCCCCceEEecCCCCC-CHHHHHHHHHHHHHHCC
Confidence            9999999999999999999874  8999999999999999998854   4567899999998 99999999999999999


Q ss_pred             CCCCCccCCCCCcCCCCCCCCCCCCcccC
Q psy494          165 LDLNLAPLYPEVQYPVSRGTKPLGHFVDW  193 (207)
Q Consensus       165 ~~vdw~~~~~~~~~~~~~~~~~~lP~y~f  193 (207)
                      ++|||..+|+....+..   ...||+|||
T Consensus       466 ~~vdw~~~~~~~~~~~~---~~~LP~Y~f  491 (491)
T 3tzy_A          466 HDLDIRTLFSRASGPQD---YANIPPTRF  491 (491)
T ss_dssp             CSCCGGGGSCCCSSGGG---SCCCCC---
T ss_pred             CCCChHHHCCCCCCCCC---cCCCCCCCC
Confidence            99999999976443221   234899998
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} Back     alignment and structure
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Back     alignment and structure
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} Back     alignment and structure
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Back     alignment and structure
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural genomics, protein structure initiative; 2.10A {Clostridium perfringens} Back     alignment and structure
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A 4amp_A 4amo_A Back     alignment and structure
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacyl; FABD, MCAT, transferase; 2.50A {Helicobacter pylori} Back     alignment and structure
>3qat_A Malonyl COA-acyl carrier protein transacylase; seattle structural genomics center for infectious disease, S bartonella, CAT-scratch disease; 1.60A {Bartonella henselae} Back     alignment and structure
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD, xanthomonas oryzae PV. ORYZ KACC10331, transferase; 1.60A {Xanthomonas oryzae PV} PDB: 3een_A 3r97_A* Back     alignment and structure
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty acid/phospholipid metabolism, transferase; HET: MSE; 1.50A {Coxiella burnetii} Back     alignment and structure
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA, acyl carrier protein TRAN (MCAT), FABD, acyltransferase; 2.10A {Streptococcus pneumoniae} Back     alignment and structure
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA: acyl carrier protein TRAN (MCAT), FABD; 1.46A {Staphylococcus aureus} Back     alignment and structure
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} Back     alignment and structure
>1mla_A Malonyl-coenzyme A acyl carrier protein transacylase; acyltransferase; 1.50A {Escherichia coli} SCOP: c.19.1.1 d.58.23.1 PDB: 2g2o_A 2g1h_A 2g2y_A 2g2z_A* 3h0p_A 3hjv_A* Back     alignment and structure
>1nm2_A Malonyl COA:acyl carrier protein malonyltransfera; alpha/beta hydrolase-like core; 2.00A {Streptomyces coelicolor} SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B Back     alignment and structure
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase; malonyl-COA:ACP transacylase, , nucleophili fatty acids biosynthesis; 2.30A {Mycobacterium tuberculosis} PDB: 2qj3_A Back     alignment and structure
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium cellulosum} PDB: 3rgi_A Back     alignment and structure
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid synthase, lipid synthesis, mitochondrion transfer transferase; HET: AE4; 1.55A {Homo sapiens} Back     alignment and structure
>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid, decode biostructures, dried seaweed, acyltran transferase; 2.30A {Burkholderia pseudomallei} Back     alignment and structure
>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* Back     alignment and structure
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* Back     alignment and structure
>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* Back     alignment and structure
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* Back     alignment and structure
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* Back     alignment and structure
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* Back     alignment and structure
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Back     alignment and structure
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 207
d1mlaa1235 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of m 5e-07
d1nm2a1253 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of m 2e-06
d1nm2a1253 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of m 0.002
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of malonyl-CoA ACP transacylase FabD {Escherichia coli [TaxId: 562]} Length = 235 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: FabD-like
domain: Catalytic domain of malonyl-CoA ACP transacylase FabD
species: Escherichia coli [TaxId: 562]

 Score = 46.4 bits (109), Expect = 5e-07
 Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 4/62 (6%)

Query: 2  GSQWNGMGTDLL-RIPLFRQSMERLDAVLKPHGVDLFHILTSTDNTLFDNILNSFVGIAA 60
          GSQ  GM  D+    P+  ++     A L   G DL+ +         +    +   +  
Sbjct: 10 GSQTVGMLADMAASYPIVEETFAEASAAL---GYDLWALTQQGPAEELNKTWQTQPALLT 66

Query: 61 CQ 62
            
Sbjct: 67 AS 68
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of malonyl-CoA ACP transacylase FabD {Streptomyces coelicolor A3(2) [TaxId: 100226]} Length = 253 Back     information, alignment and structure
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of malonyl-CoA ACP transacylase FabD {Streptomyces coelicolor A3(2) [TaxId: 100226]} Length = 253 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query207
d1mlaa1235 Catalytic domain of malonyl-CoA ACP transacylase F 99.94
d1nm2a1253 Catalytic domain of malonyl-CoA ACP transacylase F 99.92
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of malonyl-CoA ACP transacylase FabD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: FabD-like
domain: Catalytic domain of malonyl-CoA ACP transacylase FabD
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2.2e-27  Score=182.29  Aligned_cols=131  Identities=17%  Similarity=0.204  Sum_probs=112.0

Q ss_pred             CCCchhhHHHHhh-ccHHHHHHHHHHHHhhccCCCChhhhhcccCchhhhhh--Hhhhhhhhhc----------------
Q psy494            1 MGSQWNGMGTDLL-RIPLFRQSMERLDAVLKPHGVDLFHILTSTDNTLFDNI--LNSFVGIAAC----------------   61 (207)
Q Consensus         1 ~GsQ~~gMg~~L~-~~~~fr~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~--~q~~l~~~~c----------------   61 (207)
                      +||||+|||++|| ++|+||+.+++|++++   |+++.+.+.......++++  .||++ +++.                
T Consensus         9 QGsQ~~gMg~~L~~~~p~~r~~~~~~~~~l---~~~l~~~~~~~~~~~~~~t~~~qpai-~~~~~al~~~l~~~~g~~p~   84 (235)
T d1mlaa1           9 QGSQTVGMLADMAASYPIVEETFAEASAAL---GYDLWALTQQGPAEELNKTWQTQPAL-LTASVALYRVWQQQGGKAPA   84 (235)
T ss_dssp             TTCCCTTTTHHHHHHCHHHHHHHHHHHHHH---TSCHHHHHHHCCHHHHTSHHHHHHHH-HHHHHHHHHHHHHTTCCCCS
T ss_pred             hhhhHHHHHHHHHHCCHHHHHHHHHHHHHh---CCCHHHHHhcCcccccccHHHHHHHH-HHHHHHHHHHHHHhcCCCce
Confidence            5999999999999 9999999999999999   8999999887776667776  88887 4440                


Q ss_pred             ----------------------------------------------------------------ccCCCCceecccccCC
Q psy494           62 ----------------------------------------------------------------QPRSSKWISSSILEDA   77 (207)
Q Consensus        62 ----------------------------------------------------------------~~~~~~~~~s~vt~~~   77 (207)
                                                                                      +..+.++++|+++|..
T Consensus        85 ~v~GhSlGE~aAl~~aG~ls~e~~~~lv~~Rg~~m~~~~~~~pfHs~~m~~~~~~~~~~l~~v~~~~p~~pviS~~tg~~  164 (235)
T d1mlaa1          85 MMAGHSLGEYSALVCAGVIDFADAVRLVEMRGKFMQEAVPEVPSHCALMKPAADKLAVELAKITFNAPTVPVVNNVDVKC  164 (235)
T ss_dssp             EEEESTHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHSCTSCTTSGGGHHHHHHHHHHHHTSCCCCCSSCBBCTTTCCB
T ss_pred             eeeeccchHHHHHHHcCCcccccHHHHHHHHHHHHHHcCCCCcchhHHhhhhHHHHHHHHhcCCCCCCcceEEeCCCCCC
Confidence                                                                            5677788999999998


Q ss_pred             CCCCCCCCCChHHHHHhcccceeHHHHHhhccCC--cEEEEeCCchhHHHHHHHHhccccccc
Q psy494           78 WGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPAN--AICIEIAPHGLLQAILKRSLAEKEVVN  138 (207)
Q Consensus        78 ~~~~~~~~~~~~y~~~~l~~pV~f~~~i~~l~~~--~~~lEiGp~~~L~~~~~~~~~~~~~~~  138 (207)
                      +.++..   ..+||++|+++||+|.++++++.+.  ++|||+|||++|++++|+++++..+..
T Consensus       165 ~~~~~~---~~~~l~~ql~~pV~f~~~i~~l~~~g~~~fiEiGP~~~Lt~l~~~i~~~~~~~~  224 (235)
T d1mlaa1         165 ETNGDA---IRDALVRQLYNPVQWTKSVEYMAAQGVEHLYEVGPGKVLTGLTKRIVDTLTASA  224 (235)
T ss_dssp             CCSHHH---HHHHHHHHHHSCEEHHHHHHHHHHTTCCEEEECSSSSHHHHHHHHHCTTCEEEE
T ss_pred             CCCHHH---HHHHHHHhccCCccHHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHcCCCCcee
Confidence            876433   5799999999999999999999875  789999999999999999985544433
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of malonyl-CoA ACP transacylase FabD {Streptomyces coelicolor A3(2) [TaxId: 100226]} Back     information, alignment and structure