Psyllid ID: psy498

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
IDVKKNKIFLHRTHCDEILLKDLFIGNSVKLFSRILKIVDYGDRILKIVDYGDRYTKSYLESTNYQCTIAFLRPHANDSKSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQEYTARIPISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQEDPNK
ccccccccEEEcccccccccccEEEccEEEEEcEEEEEEEccccccHHcccccHHHHHHHccccccEEEEEEcccccccHHHHHHHHHHccccEEHHHHccccHHHHHHHHcccccccccEEEEEcccEEEEEEEcccHHHHHHHHHccccHHHHHccccccccccccccccccEEEcccccccccccc
cccHccHHHHHccccccccHHHEEEccEEEEEEcccccccccccEEEEEEcccHHHHHHccccccccEEEEEccHHHHHHHHHHHHHHHcccEEEEEEEEEccHHHHHHHHHHHcccccHHHHHccccEEEEEEccccHHHHHHHHHccccHHHHHHHccccEEEEEccccccccEEccccHHHccccc
idvkknkiflhrTHCDEILLKDLFIGNSVKLFSRILKIVDYGDRILKIVDYGDRYTKSYLESTNYQCTIAflrphandskSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQeytaripissmlngpVIVFQLRGVNAVQKLQDvvgpadreealsnypHSLRARYShlgasnlyvateetvqedpnk
idvkknkiflhrthcdeillkdlfiGNSVKLFSRILKIVDYGDRILKIVDYGDRYTKSYLESTNYQCTIAFLRPHANDSKSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQEYTARIPISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVateetvqedpnk
IDVKKNKIFLHRTHCDEILLKDLFIGNSVKLFSRILKIVDYGDRILKIVDYGDRYTKSYLESTNYQCTIAFLRPHANDSKSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQEYTARIPISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQEDPNK
******KIFLHRTHCDEILLKDLFIGNSVKLFSRILKIVDYGDRILKIVDYGDRYTKSYLESTNYQCTIAFLRPHANDSKSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQEYTARIPISSMLNGPVIVFQLRGVNAVQKLQDVVGP************SLRARYSHLGASNLYV************
IDVKKNKIFLHRTHCDEILLKDLFIGNSVKLFSRILKIVDYGDRILKIVDYGDRYTK***ESTNYQCTIAFLRPHANDSKSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQEYTARIPISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATE*********
IDVKKNKIFLHRTHCDEILLKDLFIGNSVKLFSRILKIVDYGDRILKIVDYGDRYTKSYLESTNYQCTIAFLRPHANDSKSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQEYTARIPISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVAT**********
IDVKKNKIFLHRTHCDEILLKDLFIGNSVKLFSRILKIVDYGDRILKIVDYGDRYTKSYLESTNYQCTIAFLRPHANDSKSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQEYTARIPISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVA***********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
IDVKKNKIFLHRTHCDEILLKDLFIGNSVKLFSRILKIVDYGDRILKIVDYGDRYTKSYLESTNYQCTIAFLRPHANDSKSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQEYTARIPISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQEDPNK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query189 2.2.26 [Sep-21-2011]
Q5E9Y9 377 Nucleoside diphosphate ki yes N/A 0.857 0.429 0.306 6e-14
Q9QXL8 395 Nucleoside diphosphate ki yes N/A 0.857 0.410 0.289 3e-13
Q9QXL7 395 Nucleoside diphosphate ki yes N/A 0.857 0.410 0.295 3e-13
Q9Y5B8 376 Nucleoside diphosphate ki yes N/A 0.851 0.428 0.288 1e-12
Q95YJ5653 Thioredoxin domain-contai no N/A 0.523 0.151 0.349 2e-08
P90666 837 Thioredoxin domain-contai N/A N/A 0.534 0.120 0.352 6e-08
O67528142 Nucleoside diphosphate ki yes N/A 0.529 0.704 0.252 6e-05
Q715T0 586 Thioredoxin domain-contai no N/A 0.571 0.184 0.280 8e-05
Q8N427588 Thioredoxin domain-contai no N/A 0.597 0.192 0.312 9e-05
>sp|Q5E9Y9|NDK7_BOVIN Nucleoside diphosphate kinase 7 OS=Bos taurus GN=NME7 PE=2 SV=1 Back     alignment and function desciption
 Score = 77.0 bits (188), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 14/176 (7%)

Query: 2   DVKKNKIFLHRTHCDEILLKDLFIGNSVKLFSRILKIVDYGDRILKIVDYGDRYTKSYLE 61
           DVK ++ FL RT  +++ L+DLFIGN V +FS          R L ++DYGD+YT   L 
Sbjct: 39  DVKNHRTFLKRTKYEDLHLEDLFIGNKVNIFS----------RQLVLLDYGDQYTARQLG 88

Query: 62  STNYQCTIAFLRPHANDSKSELFQDLINHGFEFINLLMVEFNEEIK---RIMSQQEYTAR 118
           S   + T+A ++P A     E+ + +   GF    L M+  + +      I  Q      
Sbjct: 89  SKKEK-TLALIKPDAVSKAGEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLN 147

Query: 119 IPISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASN 174
             I  + +GP+I  ++   +AV + + ++GPA+   A ++ P S+RA +   G  N
Sbjct: 148 ELIQFITSGPIIAMEILRDDAVCEWKRLLGPANSGLARTDAPESIRALFGTDGIKN 203
Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
Bos taurus (taxid: 9913)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 6
>sp|Q9QXL8|NDK7_MOUSE Nucleoside diphosphate kinase 7 OS=Mus musculus GN=Nme7 PE=2 SV=1 Back     alignment and function description
>sp|Q9QXL7|NDK7_RAT Nucleoside diphosphate kinase 7 OS=Rattus norvegicus GN=Nme7 PE=1 SV=1 Back     alignment and function description
>sp|Q9Y5B8|NDK7_HUMAN Nucleoside diphosphate kinase 7 OS=Homo sapiens GN=NME7 PE=1 SV=1 Back     alignment and function description
>sp|Q95YJ5|TXND3_CIOIN Thioredoxin domain-containing protein 3 homolog OS=Ciona intestinalis GN=CiIC3 PE=2 SV=1 Back     alignment and function description
>sp|P90666|TXND3_HELCR Thioredoxin domain-containing protein 3 homolog OS=Heliocidaris crassispina GN=NME8 PE=1 SV=1 Back     alignment and function description
>sp|O67528|NDK_AQUAE Nucleoside diphosphate kinase OS=Aquifex aeolicus (strain VF5) GN=ndk PE=1 SV=1 Back     alignment and function description
>sp|Q715T0|TXND3_MOUSE Thioredoxin domain-containing protein 3 OS=Mus musculus GN=Nme8 PE=2 SV=1 Back     alignment and function description
>sp|Q8N427|TXND3_HUMAN Thioredoxin domain-containing protein 3 OS=Homo sapiens GN=NME8 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query189
383860486 384 PREDICTED: nucleoside diphosphate kinase 0.825 0.406 0.343 2e-20
340719880 384 PREDICTED: nucleoside diphosphate kinase 0.920 0.453 0.301 6e-18
350408531 384 PREDICTED: nucleoside diphosphate kinase 0.920 0.453 0.296 1e-17
322784960 384 hypothetical protein SINV_09647 [Solenop 0.814 0.401 0.327 3e-17
307199410 490 Nucleoside diphosphate kinase 7 [Harpegn 0.899 0.346 0.305 4e-16
380023775 384 PREDICTED: nucleoside diphosphate kinase 0.820 0.403 0.304 4e-16
307175380 382 Nucleoside diphosphate kinase 7 [Campono 0.931 0.460 0.321 6e-16
332017104 384 Nucleoside diphosphate kinase 7 [Acromyr 0.899 0.442 0.300 8e-16
449283928 365 Nucleoside diphosphate kinase 7, partial 0.851 0.441 0.316 2e-15
443700424 374 hypothetical protein CAPTEDRAFT_160391 [ 0.862 0.435 0.288 5e-15
>gi|383860486|ref|XP_003705720.1| PREDICTED: nucleoside diphosphate kinase 7-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 92/169 (54%), Gaps = 13/169 (7%)

Query: 2   DVKKNKIFLHRTHCDEILLKDLFIGNSVKLFSRILKIVDYGDRILKIVDYGDRYTKSYLE 61
           D+K  K FL RT C+ I  KD ++G +V +FSR + I DY D +          T++ L+
Sbjct: 41  DIKARKTFLRRTKCEGIQAKDFYVGATVTIFSRNISITDYADCV----------TRTKLQ 90

Query: 62  STNYQCTIAFLRPHANDSKSELFQDLINHGFEFINLLMVEFNEEIKRIMSQQEYTARIP- 120
            T  Q T A L+P+  D   EL + +I+  F   N+ M++  +E    + + E +  I  
Sbjct: 91  -TKMQKTFAMLKPNVIDKVGELLKRIISCNFHIANIKMIKLTKEEASDLCKDEDSTNITY 149

Query: 121 -ISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
            ++ + +GP++  +L G NA+ +  +V+GP D EEA S  P SLRA Y 
Sbjct: 150 IVNYLTSGPIVALELLGDNAITRWIEVIGPEDSEEARSKAPSSLRACYG 198

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|340719880|ref|XP_003398373.1| PREDICTED: nucleoside diphosphate kinase 7-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350408531|ref|XP_003488435.1| PREDICTED: nucleoside diphosphate kinase 7-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|322784960|gb|EFZ11731.1| hypothetical protein SINV_09647 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307199410|gb|EFN80035.1| Nucleoside diphosphate kinase 7 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|380023775|ref|XP_003695687.1| PREDICTED: nucleoside diphosphate kinase 7-like [Apis florea] Back     alignment and taxonomy information
>gi|307175380|gb|EFN65399.1| Nucleoside diphosphate kinase 7 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332017104|gb|EGI57903.1| Nucleoside diphosphate kinase 7 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|449283928|gb|EMC90522.1| Nucleoside diphosphate kinase 7, partial [Columba livia] Back     alignment and taxonomy information
>gi|443700424|gb|ELT99378.1| hypothetical protein CAPTEDRAFT_160391 [Capitella teleta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query189
UNIPROTKB|E1C3P8 376 NME7 "Uncharacterized protein" 0.857 0.430 0.312 1.9e-16
UNIPROTKB|F1P745260 NME7 "Uncharacterized protein" 0.857 0.623 0.312 8.8e-15
UNIPROTKB|G1K159197 NME7 "Nucleoside diphosphate k 0.857 0.822 0.306 1.1e-14
UNIPROTKB|F1RPV8263 NME7 "Uncharacterized protein" 0.857 0.615 0.301 2.3e-14
UNIPROTKB|F1PMF2 376 NME7 "Uncharacterized protein" 0.857 0.430 0.312 3.2e-14
UNIPROTKB|Q5E9Y9 377 NME7 "Nucleoside diphosphate k 0.857 0.429 0.306 4.2e-14
UNIPROTKB|E9PNU1256 NME7 "Nucleoside diphosphate k 0.857 0.632 0.295 4.9e-14
UNIPROTKB|F1LVA7258 Nme7 "Nucleoside diphosphate k 0.857 0.627 0.295 4.9e-14
UNIPROTKB|B4DXC8 339 NME7 "Nucleoside diphosphate k 0.857 0.477 0.295 1.4e-13
UNIPROTKB|Q9Y5B8 376 NME7 "Nucleoside diphosphate k 0.857 0.430 0.295 1.9e-13
UNIPROTKB|E1C3P8 NME7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 208 (78.3 bits), Expect = 1.9e-16, P = 1.9e-16
 Identities = 55/176 (31%), Positives = 91/176 (51%)

Query:     2 DVKKNKIFLHRTHCDEILLKDLFIGNSVKLFSRILKIVDYGDRILKIVDYGDRYTKSYLE 61
             DVK ++ FL RT  + + L+DLF+GN + +FSR L +VDYGD+          YT   L 
Sbjct:    39 DVKNHRTFLKRTKYESLHLEDLFVGNKITVFSRHLSLVDYGDQ----------YTARKLG 88

Query:    62 STNYQCTIAFLRPHANDSKSELFQDLINHGFEFIN--LLMVEFNEEIKRIMSQQEYTARI 119
             S   + T+A ++P A     EL   +IN GF      ++++   E +   +  Q      
Sbjct:    89 SRKER-TLALIKPDATPKIGELVDIIINAGFTITKAKMMVLSRKEAVDFYVDHQSKPFYN 147

Query:   120 PISSML-NGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASN 174
              +   + +GPV+  ++   +AV K + ++GPA+   A ++ P S+RA + H G  N
Sbjct:   148 ELLQFITSGPVVAMEILRDDAVCKWKTLLGPANSAVARTDEPDSIRANFGHDGIRN 203
GO:0004550 "nucleoside diphosphate kinase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0006183 "GTP biosynthetic process" evidence=IEA
GO:0006228 "UTP biosynthetic process" evidence=IEA
GO:0006241 "CTP biosynthetic process" evidence=IEA
GO:0003351 "epithelial cilium movement" evidence=IEA
GO:0005813 "centrosome" evidence=IEA
GO:0007368 "determination of left/right symmetry" evidence=IEA
GO:0007420 "brain development" evidence=IEA
GO:0042073 "intraflagellar transport" evidence=IEA
GO:0060830 "ciliary receptor clustering involved in smoothened signaling pathway" evidence=IEA
GO:0060972 "left/right pattern formation" evidence=IEA
UNIPROTKB|F1P745 NME7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|G1K159 NME7 "Nucleoside diphosphate kinase 7" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RPV8 NME7 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PMF2 NME7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E9Y9 NME7 "Nucleoside diphosphate kinase 7" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E9PNU1 NME7 "Nucleoside diphosphate kinase 7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1LVA7 Nme7 "Nucleoside diphosphate kinase 7" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|B4DXC8 NME7 "Nucleoside diphosphate kinase 7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y5B8 NME7 "Nucleoside diphosphate kinase 7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query189
cd04412134 cd04412, NDPk7B, Nucleoside diphosphate kinase 7 d 1e-13
cd04416132 cd04416, NDPk_TX, NDP kinase domain of thioredoxin 8e-10
cd04415131 cd04415, NDPk7A, Nucleoside diphosphate kinase 7 d 3e-08
cd00595133 cd00595, NDPk, Nucleoside diphosphate kinases (NDP 4e-07
cd04418132 cd04418, NDPk5, Nucleoside diphosphate kinase homo 6e-07
smart00562135 smart00562, NDK, Enzymes that catalyze nonsubstrat 2e-06
PLN02931177 PLN02931, PLN02931, nucleoside diphosphate kinase 2e-05
pfam00334135 pfam00334, NDK, Nucleoside diphosphate kinase 2e-05
smart00676104 smart00676, DM10, Domains in hypothetical proteins 3e-04
cd04413130 cd04413, NDPk_I, Nucleoside diphosphate kinase Gro 0.003
>gnl|CDD|239875 cd04412, NDPk7B, Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B Back     alignment and domain information 
 Score = 64.2 bits (157), Expect = 1e-13
 Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 14/112 (12%)

Query: 66  QCTIAFLRPHANDSKS--ELFQDLINHGFEFINLLMV--------EFNEEIKRIMSQQEY 115
            CT+  ++PHA       E+ Q +++ GFE   L M         EF E  K ++   E 
Sbjct: 1   NCTVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLEVYKGVVP--EL 58

Query: 116 TARIPISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARY 167
            A +    + +GP I  ++ G NAV+  ++  GP D E A    P++LRARY
Sbjct: 59  PAMV--DELTSGPCIALEIAGENAVKTFREFCGPFDPEIAKQLRPNTLRARY 108

The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner. Length = 134
>gnl|CDD|239879 cd04416, NDPk_TX, NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively Back     alignment and domain information
>gnl|CDD|239878 cd04415, NDPk7A, Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B Back     alignment and domain information
>gnl|CDD|238335 cd00595, NDPk, Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation Back     alignment and domain information
>gnl|CDD|239880 cd04418, NDPk5, Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species Back     alignment and domain information
>gnl|CDD|197791 smart00562, NDK, Enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates Back     alignment and domain information
>gnl|CDD|215503 PLN02931, PLN02931, nucleoside diphosphate kinase family protein Back     alignment and domain information
>gnl|CDD|201162 pfam00334, NDK, Nucleoside diphosphate kinase Back     alignment and domain information
>gnl|CDD|128921 smart00676, DM10, Domains in hypothetical proteins in Drosophila, C Back     alignment and domain information
>gnl|CDD|239876 cd04413, NDPk_I, Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 189
cd04415131 NDPk7A Nucleoside diphosphate kinase 7 domain A (N 100.0
cd04418132 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP 100.0
PRK14542137 nucleoside diphosphate kinase; Provisional 100.0
cd04414135 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 100.0
cd04412134 NDPk7B Nucleoside diphosphate kinase 7 domain B (N 100.0
PLN02931177 nucleoside diphosphate kinase family protein 100.0
PRK14541140 nucleoside diphosphate kinase; Provisional 100.0
PTZ00093149 nucleoside diphosphate kinase, cytosolic; Provisio 100.0
cd04416132 NDPk_TX NDP kinase domain of thioredoxin domain-co 100.0
cd00595133 NDPk Nucleoside diphosphate kinases (NDP kinases, 100.0
PRK14545139 nucleoside diphosphate kinase; Provisional 100.0
PRK14540134 nucleoside diphosphate kinase; Provisional 100.0
COG0105135 Ndk Nucleoside diphosphate kinase [Nucleotide tran 100.0
cd04413130 NDPk_I Nucleoside diphosphate kinase Group I (NDPk 100.0
PRK00668134 ndk mulitfunctional nucleoside diphosphate kinase/ 100.0
PRK14543169 nucleoside diphosphate kinase; Provisional 100.0
PLN02619238 nucleoside-diphosphate kinase 100.0
PF00334135 NDK: Nucleoside diphosphate kinase; InterPro: IPR0 100.0
smart00562135 NDK These are enzymes that catalyze nonsubstrate s 100.0
PRK14544183 nucleoside diphosphate kinase; Provisional 100.0
KOG0888|consensus156 100.0
smart00676104 DM10 Domains in hypothetical proteins in Drosophil 99.15
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B Back     alignment and domain information 
Probab=100.00  E-value=4.3e-43  Score=271.42  Aligned_cols=119  Identities=22%  Similarity=0.405  Sum_probs=116.1

Q ss_pred             eEEEEEEeCccccchHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeecchH
Q psy498           66 QCTIAFLRPHANDSKSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGVNAV  140 (189)
Q Consensus        66 e~Tl~lIKPda~~~~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~naV  140 (189)
                      |+||+|||||+++++|+||++|+++||.|+++||++||++ |++    |.+++||  ++|+++|+|||+++|+|.|+|||
T Consensus         1 erTl~iIKPdav~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~gk~f~--~~Lv~~m~sgp~va~~l~g~nav   78 (131)
T cd04415           1 EKTLALIKPDAYSKIGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYAEHQSKPFY--NELVQFMTSGPIVAMELVGDDAI   78 (131)
T ss_pred             CeEEEEECcHHHHhHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCch--HHHHHHHhcCCeEEEEEECCcHH
Confidence            6999999999999999999999999999999999999999 988    8899999  99999999999999999999999


Q ss_pred             HHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498          141 QKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED  186 (189)
Q Consensus       141 ~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~  186 (189)
                      ++||+++||+||..|+...|+|||++||.+.++|++||||++++|+
T Consensus        79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e~a~  124 (131)
T cd04415          79 SEWRKLLGPTNSSVARSDAPNSIRALFGTDGTRNAAHGSDSVASAA  124 (131)
T ss_pred             HHHHHHhCCCChHHhhccCCCcchhhhcccccceeEECCCCHHHHH
Confidence            9999999999999999999999999999999999999999999885

The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species Back     alignment and domain information
>PRK14542 nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues Back     alignment and domain information
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B Back     alignment and domain information
>PLN02931 nucleoside diphosphate kinase family protein Back     alignment and domain information
>PRK14541 nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional Back     alignment and domain information
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively Back     alignment and domain information
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation Back     alignment and domain information
>PRK14545 nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>PRK14540 nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate Back     alignment and domain information
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated Back     alignment and domain information
>PRK14543 nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>PLN02619 nucleoside-diphosphate kinase Back     alignment and domain information
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2 Back     alignment and domain information
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates Back     alignment and domain information
>PRK14544 nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>KOG0888|consensus Back     alignment and domain information
>smart00676 DM10 Domains in hypothetical proteins in Drosophila, C Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query189
3ztq_A142 Hexagonal Crystal Form P61 Of The Aquifex Aeolicus 6e-06
>pdb|3ZTQ|A Chain A, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus Nucleoside Diphosphate Kinase Length = 142 Back     alignment and structure 
Iteration: 1

 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 56/107 (52%), Gaps = 7/107 (6%)
Query: 68  TIAFLRPHANDSKS--ELFQDLINHGFEFINLLMVEFNEE----IKRIMSQQEYTARIPI 121
           T+  ++P A +  +  ++    I  GF+   L M  F  E       +  ++ +   + +
Sbjct: 6   TLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQEL-V 64
Query: 122 SSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYS 168
             M +GPV+   L G +A++++++++GP D EEA    P+S+RA++ 
Sbjct: 65  EFMSSGPVVAAVLEGEDAIKRVREIIGPTDSEEARKVAPNSIRAQFG 111

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query189
3ztp_A142 Nucleoside diphosphate kinase; transferase; HET: G 100.0
4hr2_A145 Nucleoside diphosphate kinase; ssgcid, seattle str 100.0
3evo_A146 NDP kinase, NDK, nucleoside diphosphate kinase; ph 100.0
4fkx_A161 NDK B, nucleoside diphosphate kinase; structural g 100.0
3mpd_A151 Nucleoside diphosphate kinase; ssgcid, NIH, niaid, 100.0
3q8u_A157 Nucleoside diphosphate kinase; ferridoxin fold, al 100.0
1k44_A136 Nucleoside diphosphate kinase; nucleoside triphosp 100.0
3fkb_A155 NDP kinase, NDK, nucleoside diphosphate kinase, cy 100.0
1wkj_A137 Nucleoside diphosphate kinase; thermus thermophilu 100.0
1w7w_A182 Nucleoside diphosphate kinase; NDPK3, transferase; 100.0
3l7u_A172 Nucleoside diphosphate kinase A; ATP-binding, nucl 100.0
1nhk_R144 Nucleoside diphosphate kinase; phosphotransferase; 100.0
2hur_A142 NDK, nucleoside diphosphate kinase, NDP kinase; ty 100.0
3r9l_A155 Nucleoside diphosphate kinase; structural genomics 100.0
2vu5_A148 Nucleoside diphosphate kinase; nucleotide-binding, 100.0
1pku_A150 Nucleoside diphosphate kinase I; RICE, transferase 100.0
1xiq_A157 Nucleoside diphosphate kinase B; protein structure 100.0
3bbb_A151 Nucleoside diphosphate kinase B; transcription fac 100.0
1u8w_A149 Nucleoside diphosphate kinase I; nucleotide diphos 100.0
1nb2_A150 Nucleoside diphosphate kinase; bacillus halodenitr 100.0
1ehw_A162 NDPK H4, nucleoside diphosphate kinase; NM23, mito 100.0
3b54_A161 NDK, NDP kinase, nucleoside diphosphate kinase; al 100.0
1s57_A153 Nucleoside diphosphate kinase II; transferase; HET 100.0
2az3_A164 Nucleoside diphosphate kinase; halophilic, transfe 100.0
1zs6_A169 Nucleoside diphosphate kinase 3; nucleotide metabo 100.0
2dxe_A160 Nucleoside diphosphate kinase; nucleoside binding, 100.0
3js9_A156 Nucleoside diphosphate kinase family protein; niai 100.0
4dz6_A190 Nucleoside diphosphate kinase; ssgcid, niaid, vana 100.0
1xqi_A195 Nucleoside diphosphate kinase; alpha/beta sandwich 100.0
3bh7_B352 Protein XRP2; protein-protein complex, GTPase acti 99.93
2z14_A133 EF-hand domain-containing family member C2; DUF112 99.07
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A Back     alignment and structure
Probab=100.00  E-value=4.1e-44  Score=279.38  Aligned_cols=120  Identities=24%  Similarity=0.450  Sum_probs=116.8

Q ss_pred             ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498           65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV  137 (189)
Q Consensus        65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~  137 (189)
                      +|+||+|||||++++  +|+||++|+++||.|+++||++||++ |++    |.++|||  ++|++||+||||+||+|.|+
T Consensus         3 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~~~~~kpff--~~Lv~~mtSGPvva~vl~g~   80 (142)
T 3ztp_A            3 VERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFF--QELVEFMSSGPVVAAVLEGE   80 (142)
T ss_dssp             EEEEEEEECHHHHHHTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTH--HHHHHHHTSSCEEEEEEEEE
T ss_pred             cceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEeeccCCHHHHHHHHHHhcCCchH--HHHHHHhcCCCEEEEEEeCC
Confidence            699999999999987  79999999999999999999999999 988    8899999  99999999999999999999


Q ss_pred             chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498          138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED  186 (189)
Q Consensus       138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~  186 (189)
                      |||+.||+++|||||..|+..+|+|||++||.+..+|++|||||+++|+
T Consensus        81 naV~~~R~l~G~t~p~~A~~~~pgtiR~~fg~~~~~N~vHgSDs~esA~  129 (142)
T 3ztp_A           81 DAIKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIHASDSPESAQ  129 (142)
T ss_dssp             THHHHHHHHHCCSSHHHHHHHCTTSHHHHHCCSSSSCSEEECCSHHHHH
T ss_pred             CHHHHHHHhcCCCCHHHhhhcCCCChHHHhCCCCCceeEEeCCCHHHHH
Confidence            9999999999999999999999999999999999999999999999885
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A* Back     alignment and structure
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ... Back     alignment and structure
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A* Back     alignment and structure
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0 Back     alignment and structure
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A* Back     alignment and structure
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1 Back     alignment and structure
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ... Back     alignment and structure
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A* Back     alignment and structure
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1 Back     alignment and structure
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens} Back     alignment and structure
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A Back     alignment and structure
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli} Back     alignment and structure
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1 Back     alignment and structure
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis} Back     alignment and structure
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1 Back     alignment and structure
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1 Back     alignment and structure
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A* Back     alignment and structure
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1 Back     alignment and structure
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1 Back     alignment and structure
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1 Back     alignment and structure
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae} Back     alignment and structure
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A* Back     alignment and structure
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A Back     alignment and structure
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1 Back     alignment and structure
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A* Back     alignment and structure
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0 Back     alignment and structure
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A* Back     alignment and structure
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1 Back     alignment and structure
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A Back     alignment and structure
>2z14_A EF-hand domain-containing family member C2; DUF1126, human EF-hand domain, alternative splicing, polymorphism, signaling protein; 1.68A {Homo sapiens} PDB: 2z13_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 189
d3bbba1150 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, 1e-05
d2az3a1152 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, 2e-05
d1xqia1182 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, 3e-04
d1zs6a1152 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, 8e-04
>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK {Human (Homo sapiens) [TaxId: 9606]} Length = 150 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 1e-05
 Identities = 20/117 (17%), Positives = 45/117 (38%), Gaps = 8/117 (6%)

Query: 64  NYQCTIAFLRPHA--NDSKSELFQDLINHGFEFINLLMVEFNEEI---KRIMSQQEYTAR 118
           N + T   ++P         E+ +     GF  + +  +  +EE      I  +      
Sbjct: 2   NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFP 61

Query: 119 IPISSMLNGPVIVFQLRGVNAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNL 175
             +  M +GPV+     G+N V+  + ++G  +  ++    P ++R  +      N+
Sbjct: 62  GLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNI 115
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK {Archaeon Halobacterium salinarum [TaxId: 2242]} Length = 152 Back     information, alignment and structure
>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 182 Back     information, alignment and structure
>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK {Human(Homo sapiens), NDK3 [TaxId: 9606]} Length = 152 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query189
d1ehwa_143 Nucleoside diphosphate kinase, NDK {Human (Homo sa 100.0
d1wkja1137 Nucleoside diphosphate kinase, NDK {Thermus thermo 100.0
d1k44a_135 Nucleoside diphosphate kinase, NDK {Mycobacterium 100.0
d3bbba1150 Nucleoside diphosphate kinase, NDK {Human (Homo sa 100.0
d1zs6a1152 Nucleoside diphosphate kinase, NDK {Human(Homo sap 100.0
d2az3a1152 Nucleoside diphosphate kinase, NDK {Archaeon Halob 100.0
d1xiqa_149 Nucleoside diphosphate kinase, NDK {Plasmodium fal 100.0
d1w7wa_151 Nucleoside diphosphate kinase, NDK {Pea (Pisum sat 100.0
d1nhkl_143 Nucleoside diphosphate kinase, NDK {Myxococcus xan 100.0
d1hlwa_150 Nucleoside diphosphate kinase, NDK {Dictyostelium 100.0
d1nb2a_149 Nucleoside diphosphate kinase, NDK {Bacillus halod 100.0
d1u8wa_149 Nucleoside diphosphate kinase, NDK {Thale cress (A 100.0
d1s57a_153 Nucleoside diphosphate kinase, NDK {Thale cress (A 100.0
d2dyaa1153 Nucleoside diphosphate kinase, NDK {Archaeon Pyroc 100.0
d1xqia1182 Nucleoside diphosphate kinase, NDK {Archaeon Pyrob 100.0
d2b8qa1128 Nucleoside diphosphate kinase, NDK {Mimivirus [Tax 100.0
>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human (Homo sapiens), NDK4 [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human (Homo sapiens), NDK4 [TaxId: 9606]

Probab=100.00  E-value=4.5e-43  Score=271.99  Aligned_cols=117  Identities=21%  Similarity=0.379  Sum_probs=113.4

Q ss_pred             ceEEEEEEeCccccc--hHHHHHHHHHCCCeEEeEEeeechHH-HHh----hhCCCccCCcccccccccCcEEEEEEeec
Q psy498           65 YQCTIAFLRPHANDS--KSELFQDLINHGFEFINLLMVEFNEE-IKR----IMSQQEYTARIPISSMLNGPVIVFQLRGV  137 (189)
Q Consensus        65 ~e~Tl~lIKPda~~~--~g~Ii~~I~~~Gf~I~~~k~~~Lt~~-a~e----~~~~~~f~~~~lv~~mtsGpvval~L~g~  137 (189)
                      .|+||+|||||++++  +|+||++|+++||.|+++|+++||++ |.+    |.++|||  ++|++||+||||+||+|.|+
T Consensus         5 ~E~Tl~iIKPDav~~~~~g~Ii~~i~~~Gf~Iv~~k~~~lt~e~a~~~Y~~~~~k~f~--~~lv~~m~sGp~~a~~l~g~   82 (143)
T d1ehwa_           5 RERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFY--PALIRYMSSGPVVAMVWEGY   82 (143)
T ss_dssp             GCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTH--HHHHHHHTSSCEEEEEEEST
T ss_pred             cceEEEEECchhhhcCCHHHHHHHHHHcCCEEeeeeeeecCHHHHHHHHHHHhcchhh--hhhhheecCCCEEEEecchh
Confidence            699999999999988  79999999999999999999999999 988    7899999  99999999999999999999


Q ss_pred             chHHHHHHhhCCCChhhhhhcCCCCcccccccCCCCcEEecCCCcccCC
Q psy498          138 NAVQKLQDVVGPADREEALSNYPHSLRARYSHLGASNLYVATEETVQED  186 (189)
Q Consensus       138 naV~~~r~l~Gp~d~~~A~~~~P~slRa~fG~~~~~N~vHgSds~~~a~  186 (189)
                      |||+.||+++||+||.+|   +|+|||++||+|.++|++|||||+++|+
T Consensus        83 naV~~~R~l~Gpt~p~~a---~p~siR~~yg~~~~~N~vH~Sds~e~A~  128 (143)
T d1ehwa_          83 NVVRASRAMIGHTDSAEA---APGTIRGDFSVHISRNVIHASDSVEGAQ  128 (143)
T ss_dssp             THHHHHHHHHCCSSGGGS---CTTSHHHHHCCCSSCCSEEECSSHHHHH
T ss_pred             hHHHHHHHHhcCCCcccC---CCCCcHhhhhCcccCCCeECCCCHHHHH
Confidence            999999999999999999   6999999999999999999999999875
>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK {Human(Homo sapiens), NDK3 [TaxId: 9606]} Back     information, alignment and structure
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK {Archaeon Halobacterium salinarum [TaxId: 2242]} Back     information, alignment and structure
>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Back     information, alignment and structure
>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK {Myxococcus xanthus [TaxId: 34]} Back     information, alignment and structure
>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus halodenitrificans [TaxId: 1482]} Back     information, alignment and structure
>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702]} Back     information, alignment and structure
>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK {Mimivirus [TaxId: 315393]} Back     information, alignment and structure