Psyllid ID: psy4998

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETTIVTTTVTTIEEKYRVVAPEAMQEVYMSDSEDEGGRKQ
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHHHHHcccEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHcHccccccccccccccHHHHHHHccccEEEEEEccccccccccc
Coil and Loop (DISEMBL)
MAAQENHDGVVRYLLskggnqtlatedgfTPLAVAMQQGHDRVVAVLLEndtkgkvklpalhIAAKKDDCKAAALLLendhspdvksnshftplHIAAHYGNTNIAELLIQKHANvnnqakhnitplhVACKWGKVAMVELLISkganieaktrdgltplhcaarsghdNVIDILIEKGAALYsktkagftplhiashfGQLNMVRYLVENganvnattnlgytplhqasqQGRVLIIDLLlgagaqpnattnhgQTALNIAQKLGYISVIETLKIVTETTIVTTTVTTIEEKYRVVAPEAMQEVYmsdsedeggrkq
Flexible Loop (DISEMBL)
MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIvtettivtttvttieekyrvvapeamqevymsdsedeggrkq
Low Complexity Region (SEG)
MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIaakkddckaaalllENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISvietlkivtettivtttvttieeKYRVVAPEAMQEVYMSDSEDEGGRKQ
Disordered region (IsUnstruct)
*********VVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLEN*********SHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETT*************************************
Disordered Region (DISOPRED)
MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETTIVTTTVTTIEEKYRVVAPEAMQEVYMSD*********
Disordered Region (DISEMBL)
********GVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETTIVTTTVTTIEEKYRVVAPEAMQEV*************
Disordered Region (DISPRO)
****ENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETTIVTTTVTTIEEKYRVVAPEAMQEVYMSD*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETTIVTTTVTTIEEKYRVVAPEAMQEVYMSDSEDEGGRKQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	318	2.2.26 [Sep-21-2011]
Q12955	4377	Ankyrin-3 OS=Homo sapiens	yes	N/A	0.836	0.060	0.580	8e-86
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	yes	N/A	0.836	0.135	0.583	5e-85
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	N/A	0.861	0.069	0.567	6e-81
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	no	N/A	0.861	0.070	0.563	7e-80
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	N/A	0.833	0.140	0.529	2e-76
Q02357	1862	Ankyrin-1 OS=Mus musculus	no	N/A	0.833	0.142	0.529	3e-76
Q8NFD2	765	Ankyrin repeat and protei	no	N/A	0.864	0.359	0.342	6e-39
Q4UMH6	1179	Putative ankyrin repeat p	yes	N/A	0.827	0.223	0.355	5e-36
Q8BZ25	745	Ankyrin repeat and protei	no	N/A	0.817	0.348	0.343	2e-35
Q9ERK0	786	Receptor-interacting seri	no	N/A	0.861	0.348	0.344	2e-30

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score =  317 bits (812), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 159/274 (58%), Positives = 206/274 (75%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           MAAQENH  VV++LL  G +Q+LATEDGFTPLAVA+QQGHD+VV++LLENDTKGKV+LPA
Sbjct: 146 MAAQENHLEVVKFLLDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPA 205

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
           LHIAA+KDD KAAALLL+ND++ DV+S S FTPLHIAAHYGN N+A LL+ + A V+  A
Sbjct: 206 LHIAARKDDTKAAALLLQNDNNADVESKSGFTPLHIAAHYGNINVATLLLNRAAAVDFTA 265

Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
           +++ITPLHVA K G   MV+LL+ +GA I+AKTRDGLTPLHC ARSGH+ V+++L+++ A
Sbjct: 266 RNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRAA 325

Query: 181 ALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDL 240
            + SKTK G +PLH+A+    LN V+ L+++   V+  TN   T LH A+  G   +  +
Sbjct: 326 PILSKTKNGLSPLHMATQGDHLNCVQLLLQHNVPVDDVTNDYLTALHVAAHCGHYKVAKV 385

Query: 241 LLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           LL   A PNA   +G T L+IA K   I V+E L
Sbjct: 386 LLDKKANPNAKALNGFTPLHIACKKNRIKVMELL 419

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.
Homo sapiens (taxid: 9606)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score =  314 bits (805), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 160/274 (58%), Positives = 205/274 (74%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           MAAQENH  VVR+LL  G +Q+LATEDGFTPLAVA+QQGHD+VV++LLENDTKGKV+LPA
Sbjct: 129 MAAQENHLEVVRFLLDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPA 188

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
           LHIAA+KDD KAAALLL+ND + DV+S S FTPLHIAAHYGN N+A LL+ + A V+  A
Sbjct: 189 LHIAARKDDTKAAALLLQNDTNADVESKSGFTPLHIAAHYGNINVATLLLNRAAAVDFTA 248

Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
           +++ITPLHVA K G   MV+LL+ +GA I+AKTRDGLTPLHC ARSGH+ V+++L+++ A
Sbjct: 249 RNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRSA 308

Query: 181 ALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDL 240
            + SKTK G +PLH+A+    LN V+ L+++   V+  TN   T LH A+  G   +  +
Sbjct: 309 PILSKTKNGLSPLHMATQGDHLNCVQLLLQHNVPVDDVTNDYLTALHVAAHCGHYKVAKV 368

Query: 241 LLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           LL   A PNA   +G T L+IA K   I V+E L
Sbjct: 369 LLDKKASPNAKALNGFTPLHIACKKNRIRVMELL 402

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score =  301 bits (770), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 160/282 (56%), Positives = 204/282 (72%), Gaps = 8/282 (2%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           MAAQENH  VV+YLL  G NQ+ ATEDGFTPLAVA+QQGH++ VA+LLENDTKGKV+LPA
Sbjct: 136 MAAQENHIDVVKYLLENGANQSTATEDGFTPLAVALQQGHNQAVAILLENDTKGKVRLPA 195

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSN--------SHFTPLHIAAHYGNTNIAELLIQK 112
           LHIAA+KDD K+AALLL+NDH+ DV+S         S FTPLHIAAHYGN N+A LL+ +
Sbjct: 196 LHIAARKDDTKSAALLLQNDHNADVQSKMMVNRTTESGFTPLHIAAHYGNVNVATLLLNR 255

Query: 113 HANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVI 172
            A V+  A++ ITPLHVA K G   MV+LL+ +G  I+AKTRDGLTPLHCAARSGHD V+
Sbjct: 256 GAAVDFTARNGITPLHVASKRGNTNMVKLLLDRGGQIDAKTRDGLTPLHCAARSGHDQVV 315

Query: 173 DILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQ 232
           ++L+E+GA L ++TK G +PLH+A+    +  V++L+++ A V+  T    T LH A+  
Sbjct: 316 ELLLERGAPLLARTKNGLSPLHMAAQGDHVECVKHLLQHKAPVDDVTLDYLTALHVAAHC 375

Query: 233 GRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           G   +  LLL   A PNA   +G T L+IA K   I V+E L
Sbjct: 376 GHYRVTKLLLDKRANPNARALNGFTPLHIACKKNRIKVMELL 417

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score =  297 bits (761), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 159/282 (56%), Positives = 202/282 (71%), Gaps = 8/282 (2%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           MAAQENH  VV+YLL  G NQ+ ATEDGFTPLAVA+QQGH++ VA+LLENDTKGKV+LPA
Sbjct: 136 MAAQENHIDVVKYLLENGANQSTATEDGFTPLAVALQQGHNQAVAILLENDTKGKVRLPA 195

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSN--------SHFTPLHIAAHYGNTNIAELLIQK 112
           LHIAA+KDD K+AALLL+NDH+ DV+S         S FTPLHIAAHYGN N+A LL+ +
Sbjct: 196 LHIAARKDDTKSAALLLQNDHNADVQSKMMVNRTTESGFTPLHIAAHYGNVNVATLLLNR 255

Query: 113 HANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVI 172
            A V+  A++ ITPLHVA K G   MV+LL+ +G  I+AKTRDGLTPLHCAARSGHD V+
Sbjct: 256 GAAVDFTARNGITPLHVASKRGNTNMVKLLLDRGGQIDAKTRDGLTPLHCAARSGHDQVV 315

Query: 173 DILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQ 232
           ++L+E+ A L ++TK G +PLH+A+    +  V++L++  A V+  T    T LH A+  
Sbjct: 316 ELLLERKAPLLARTKNGLSPLHMAAQGDHVECVKHLLQYKAPVDDVTLDYLTALHVAAHC 375

Query: 233 GRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           G   +  LLL   A PNA   +G T L+IA K   I V+E L
Sbjct: 376 GHYRVTKLLLDKRANPNARALNGFTPLHIACKKNRIKVMELL 417

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score =  285 bits (730), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 145/274 (52%), Positives = 196/274 (71%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           MAAQENH  VV++LL  G NQ +ATEDGFTPLAVA+QQGH+ VVA L+   TKGKV+LPA
Sbjct: 117 MAAQENHLEVVKFLLENGANQNVATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRLPA 176

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
           LHIAA+ DD + AA+LL+ND +PDV S + FTPLHIAAHY N N+A+LL+ + A+VN   
Sbjct: 177 LHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLNRGASVNFTP 236

Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
           ++ ITPLH+A + G V MV LL+ +GA IE KT+D LTPLHCAAR+GH  + +IL++ GA
Sbjct: 237 QNGITPLHIASRRGNVIMVRLLLDRGAQIETKTKDELTPLHCAARNGHVRISEILLDHGA 296

Query: 181 ALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDL 240
            + +KTK G +P+H+A+    L+ VR L++  A ++  T    TPLH A+  G   +  +
Sbjct: 297 PIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYDAEIDDITLDHLTPLHVAAHCGHHRVAKV 356

Query: 241 LLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           LL  GA+PN+   +G T L+IA K  ++ V+E L
Sbjct: 357 LLDKGAKPNSRALNGFTPLHIACKKNHVRVMELL 390

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score =  285 bits (729), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 145/274 (52%), Positives = 196/274 (71%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           MAAQENH  VV++LL  G NQ +ATEDGFTPLAVA+QQGH+ VVA L+   TKGKV+LPA
Sbjct: 113 MAAQENHLEVVKFLLENGANQNVATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRLPA 172

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
           LHIAA+ DD + AA+LL+ND +PDV S + FTPLHIAAHY N N+A+LL+ + A+VN   
Sbjct: 173 LHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLNRGASVNFTP 232

Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
           ++ ITPLH+A + G V MV LL+ +GA IE +T+D LTPLHCAAR+GH  + +IL++ GA
Sbjct: 233 QNGITPLHIASRRGNVIMVRLLLDRGAQIETRTKDELTPLHCAARNGHVRISEILLDHGA 292

Query: 181 ALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDL 240
            + +KTK G +P+H+A+    L+ VR L++  A ++  T    TPLH A+  G   +  +
Sbjct: 293 PIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYNAEIDDITLDHLTPLHVAAHCGHHRVAKV 352

Query: 241 LLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           LL  GA+PN+   +G T L+IA K  +I V+E L
Sbjct: 353 LLDKGAKPNSRALNGFTPLHIACKKNHIRVMELL 386

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|Q8NFD2|ANKK1_HUMAN Ankyrin repeat and protein kinase domain-containing protein 1 OS=Homo sapiens GN=ANKK1 PE=2 SV=1

 Score =  161 bits (407), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 156/280 (55%), Gaps = 5/280 (1%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
           +AAQ+    +   LL+ G +     EDG+ PL  A Q G D    +LL++    D + + 
Sbjct: 401 IAAQDQQPDLCALLLAHGADANRVDEDGWAPLHFAAQNGDDGTARLLLDHGACVDAQERE 460

Query: 57  KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
               LH+AA+ +    A LL+     P++      TPLH+AA++G+ ++ +LL  + A +
Sbjct: 461 GWTPLHLAAQNNFENVARLLVSRQADPNLHEAEGKTPLHVAAYFGHVSLVKLLTSQGAEL 520

Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
           + Q ++  TPLH+A + GKV  ++ L+  GA  +A  + G  PLH AA  G   +  +L+
Sbjct: 521 DAQQRNLRTPLHLAVERGKVRAIQHLLKSGAVPDALDQSGYGPLHTAAARGKYLICKMLL 580

Query: 177 EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
             GA+L   T  G+TPLH+A++ G L ++  L E+ AN+ A   + +TPLH A++ G   
Sbjct: 581 RYGASLELPTHQGWTPLHLAAYKGHLEIIHLLAESHANMGALGAVNWTPLHLAARHGEEA 640

Query: 237 IIDLLLGAGAQPNATTNHGQTALNIA-QKLGYISVIETLK 275
           ++  LL  GA PNA    G T L++A Q+  ++SVI  L+
Sbjct: 641 VVSALLQCGADPNAAEQSGWTPLHLAVQRSTFLSVINLLE 680

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1

 Score =  151 bits (382), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 95/267 (35%), Positives = 148/267 (55%)

Query: 10   VVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDD 69
            +V  L++ G +    T++G T L  A++ G+  +V++L+ N          LH AAK  +
Sbjct: 785  LVYLLIAYGADVNAKTDNGETVLHYAVESGNLDLVSLLIHNGANVNNAKTILHFAAKSGN 844

Query: 70   CKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHV 129
                  L++N      K+NS  T LH AA  GN N+   LI+  A+++ +     T LH 
Sbjct: 845  LNLVNWLIKNKADIHAKTNSGETILHFAAESGNLNLVNWLIKNKADIHAKTNSGETILHF 904

Query: 130  ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
            A K G + +V  LI   A+I AKT  G T LH AA+SG+ N+++ LI+  A +++KT +G
Sbjct: 905  AAKSGNLNLVNWLIKNKADIHAKTNSGETILHFAAKSGNLNLVNWLIKNKADIHAKTNSG 964

Query: 190  FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
             T LH A+  G LN+V  L+ NG ++N  T+ G T LH A + G + ++ LL+  G   N
Sbjct: 965  ETILHFAAESGNLNLVSLLIHNGTDINTKTDDGLTALHYAVESGNLNLVSLLIHKGIDVN 1024

Query: 250  ATTNHGQTALNIAQKLGYISVIETLKI 276
            A TN G+T L+ A  LG + ++  L +
Sbjct: 1025 AKTNSGETILHFAVDLGSLDLVSLLMV 1051

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|Q8BZ25|ANKK1_MOUSE Ankyrin repeat and protein kinase domain-containing protein 1 OS=Mus musculus GN=Ankk1 PE=2 SV=1

 Score =  149 bits (377), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/268 (34%), Positives = 151/268 (56%), Gaps = 8/268 (2%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
           +A Q+    +   LL+ G +  LA EDG+ PL  A Q G D    +LL++    + +   
Sbjct: 409 IATQDQQPDLCALLLAHGADTNLADEDGWAPLHFAAQNGDDHTARLLLDHGALVNAREHE 468

Query: 57  KLPALHIAAKKDDCKAAALLL--ENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHA 114
               LH+AA+ +    A LL+  + D SP        TPLH+AA++G+  + +LL  + A
Sbjct: 469 GWTPLHLAAQNNFENVARLLVSRQADLSPHEAEGK--TPLHVAAYFGHIGLVKLLSGQGA 526

Query: 115 NVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDI 174
            ++ Q ++  TPLH+A + GKV  ++ L+  GA  +A    G +PLH AA  G D +  +
Sbjct: 527 ELDAQQRNLRTPLHLAVERGKVRAIQHLLKCGALPDALDHSGYSPLHIAAARGKDLIFKM 586

Query: 175 LIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR 234
           L+  GA+L  +T+ G+TPLH+A++ G L ++  L ++  +++A  ++ +TPLH A+ QG 
Sbjct: 587 LLRYGASLELRTQQGWTPLHLATYKGHLEIIHQLAKSHVDLDALGSMQWTPLHLAAFQGE 646

Query: 235 VLIIDLLLGAGAQPNATTNHGQTALNIA 262
             ++  LL  GA PNA    G T L++A
Sbjct: 647 EGVMLALLQCGANPNAAEQSGWTPLHLA 674

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ERK0|RIPK4_MOUSE Receptor-interacting serine/threonine-protein kinase 4 OS=Mus musculus GN=Ripk4 PE=1 SV=2

 Score =  133 bits (334), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/279 (34%), Positives = 145/279 (51%), Gaps = 5/279 (1%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDT----KGKV 56
           +A +   +  V++LL    N  L    G TPL +A+++    +V +LL   T    K + 
Sbjct: 446 LAVEAGQEECVKWLLLNNANPNLTNRKGSTPLHMAVERKGRGIVELLLARKTSVNAKDED 505

Query: 57  KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
           +  ALH AA+  D  +  LLLE + S +       TP+H+A  +G  NI   L+++  +V
Sbjct: 506 QWTALHFAAQNGDEASTRLLLEKNASVNEVDFEGRTPMHVACQHGQENIVRTLLRRGVDV 565

Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISK-GANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
             Q K    PLH A   G + +V+LL  + G ++ A+T DG TPLH AA+ GH  V  IL
Sbjct: 566 GLQGKDAWLPLHYAAWQGHLPIVKLLAKQPGVSVNAQTLDGRTPLHLAAQRGHYRVARIL 625

Query: 176 IEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV 235
           I+  + +   +    TPLH+A+  G  +  R L+  GA   A T+ GYT LH A+Q G +
Sbjct: 626 IDLCSDVNICSLQAQTPLHVAAETGHTSTARLLLHRGAGKEALTSEGYTALHLAAQNGHL 685

Query: 236 LIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
             + LL+   A   A     QTAL++A   G+  V+E L
Sbjct: 686 ATVKLLIEEKADVMARGPLNQTALHLAAARGHSEVVEEL 724

Involved in stratified epithelial development (By similarity). It is a direct transcriptional target of TP63. Plays a role in NF-kappa-B activation.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
332022332	7686	Ankyrin-2 [Acromyrmex echinatior]	0.849	0.035	0.686	1e-103
345488337	7482	PREDICTED: hypothetical protein LOC10012	0.849	0.036	0.689	1e-102
340713436	6672	PREDICTED: hypothetical protein LOC10064	0.849	0.040	0.682	1e-102
350425715	4893	PREDICTED: hypothetical protein LOC10074	0.849	0.055	0.682	1e-102
383847150	874	PREDICTED: ankyrin-2 [Megachile rotundat	0.849	0.308	0.682	1e-98
322778809	1346	hypothetical protein SINV_06859 [Solenop	0.849	0.200	0.678	3e-98
189235752	2692	PREDICTED: similar to ankyrin 2,3/unc44	0.849	0.100	0.664	2e-97
161082106	4189	ankyrin 2, isoform J [Drosophila melanog	0.852	0.064	0.582	3e-97
161082096	4114	ankyrin 2, isoform F [Drosophila melanog	0.852	0.065	0.582	3e-97
320545662	4329	ankyrin 2, isoform S [Drosophila melanog	0.852	0.062	0.582	4e-97

>gi|332022332|gb|EGI62644.1| Ankyrin-2 [Acromyrmex echinatior]

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/274 (68%), Positives = 211/274 (77%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           MAAQENHD VV+YLL KG NQTLATEDGFTPLAVAMQQGHD+VVAVLLENDT+GKV+LPA
Sbjct: 107 MAAQENHDSVVKYLLCKGANQTLATEDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPA 166

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
           LHIAAKKDDCKAAALLL+NDH+PDV S S FTPLHIAAHYGN  IA LL  K A+VN  A
Sbjct: 167 LHIAAKKDDCKAAALLLQNDHNPDVTSKSGFTPLHIAAHYGNDRIASLLYDKGADVNFAA 226

Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
           KHNITP+HVA KWGK+ MV LL+SKGANIEAKTRDGLTPLHCAARSGH  V+DILIEKGA
Sbjct: 227 KHNITPMHVAAKWGKIKMVNLLMSKGANIEAKTRDGLTPLHCAARSGHHEVVDILIEKGA 286

Query: 181 ALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDL 240
            + SKTK G  PLH+AS    ++  R L+ + A V+  T    T LH A+  G V +  L
Sbjct: 287 PIGSKTKNGLAPLHMASQGDHVDAARILLYHRAPVDEVTVDYLTALHVAAHCGHVRVAKL 346

Query: 241 LLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           LL   A PNA   +G T L+IA K   I V+E L
Sbjct: 347 LLDRNADPNARALNGFTPLHIACKKNRIKVVELL 380

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345488337|ref|XP_001606081.2| PREDICTED: hypothetical protein LOC100122475 [Nasonia vitripennis]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/274 (68%), Positives = 212/274 (77%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           MAAQENHD VV++LLSKG NQTLATEDGFTPLAVAMQQGHD+VVAVLLENDT+GKV+LPA
Sbjct: 146 MAAQENHDSVVKFLLSKGANQTLATEDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPA 205

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
           LHIAAKKDDCKAAALLL+NDH+PDV S S FTPLHIAAHYGN  IA LL  K ANVN  A
Sbjct: 206 LHIAAKKDDCKAAALLLQNDHNPDVTSKSGFTPLHIAAHYGNDRIASLLYDKGANVNFAA 265

Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
           KHNITP+HVA KWGK+ MV LL+SKGANIEAKTRDGLTPLHCAARSGH  V+DILIEKGA
Sbjct: 266 KHNITPMHVAAKWGKIKMVNLLMSKGANIEAKTRDGLTPLHCAARSGHHEVVDILIEKGA 325

Query: 181 ALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDL 240
            + SKTK G  PLH+AS    ++  R L+ + A V+  T    T LH A+  G V +  L
Sbjct: 326 PIGSKTKNGLAPLHMASQGDHIDAARILLYHRAPVDEVTVDYLTALHVAAHCGHVRVAKL 385

Query: 241 LLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           LL   A PNA   +G T L+IA K   I V+E L
Sbjct: 386 LLDRNADPNARALNGFTPLHIACKKNRIKVVELL 419

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713436|ref|XP_003395249.1| PREDICTED: hypothetical protein LOC100642686 [Bombus terrestris]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/274 (68%), Positives = 212/274 (77%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           MAAQENHD VV++LLSKG NQTLATEDGFTPLAVAMQQGHD+VVAVLLENDT+GKV+LPA
Sbjct: 181 MAAQENHDSVVKFLLSKGANQTLATEDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPA 240

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
           LHIAAKKDDCKAAALLL+NDH+PDV S S FTPLHIAAHYGN  IA LL  + ANVN  A
Sbjct: 241 LHIAAKKDDCKAAALLLQNDHNPDVTSKSGFTPLHIAAHYGNDRIASLLYDRGANVNFAA 300

Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
           KHNITP+HVA KWGK+ MV LL+SKGANIEAKTRDGLTPLHCAARSGH  V+DILIEKGA
Sbjct: 301 KHNITPMHVAAKWGKIKMVNLLMSKGANIEAKTRDGLTPLHCAARSGHHEVVDILIEKGA 360

Query: 181 ALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDL 240
            + SKTK G  PLH+AS    ++  R L+ + A V+  T    T LH A+  G V +  L
Sbjct: 361 PIGSKTKNGLAPLHMASQGDHVDAARILLYHRAPVDEVTVDYLTALHVAAHCGHVRVAKL 420

Query: 241 LLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           LL   A PNA   +G T L+IA K   + V+E L
Sbjct: 421 LLDRNADPNARALNGFTPLHIACKKNRLKVVELL 454

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350425715|ref|XP_003494210.1| PREDICTED: hypothetical protein LOC100742486, partial [Bombus impatiens]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/274 (68%), Positives = 212/274 (77%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           MAAQENHD VV++LLSKG NQTLATEDGFTPLAVAMQQGHD+VVAVLLENDT+GKV+LPA
Sbjct: 181 MAAQENHDSVVKFLLSKGANQTLATEDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPA 240

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
           LHIAAKKDDCKAAALLL+NDH+PDV S S FTPLHIAAHYGN  IA LL  + ANVN  A
Sbjct: 241 LHIAAKKDDCKAAALLLQNDHNPDVTSKSGFTPLHIAAHYGNDRIASLLYDRGANVNFAA 300

Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
           KHNITP+HVA KWGK+ MV LL+SKGANIEAKTRDGLTPLHCAARSGH  V+DILIEKGA
Sbjct: 301 KHNITPMHVAAKWGKIKMVNLLMSKGANIEAKTRDGLTPLHCAARSGHHEVVDILIEKGA 360

Query: 181 ALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDL 240
            + SKTK G  PLH+AS    ++  R L+ + A V+  T    T LH A+  G V +  L
Sbjct: 361 PIGSKTKNGLAPLHMASQGDHVDAARILLYHRAPVDEVTVDYLTALHVAAHCGHVRVAKL 420

Query: 241 LLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           LL   A PNA   +G T L+IA K   + V+E L
Sbjct: 421 LLDRNADPNARALNGFTPLHIACKKNRLKVVELL 454

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847150|ref|XP_003699218.1| PREDICTED: ankyrin-2 [Megachile rotundata]

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 187/274 (68%), Positives = 212/274 (77%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           MAAQENHD VV+YLLSKG NQTLATEDGFTPLAVAMQQGHD+VVAVLLENDT+GKV+LPA
Sbjct: 127 MAAQENHDSVVKYLLSKGANQTLATEDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPA 186

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
           LHIAAKKDDCKAAALLL+NDH+PDV S S FTPLHIAAHYGN  IA LL  + A+VN  A
Sbjct: 187 LHIAAKKDDCKAAALLLQNDHNPDVTSKSGFTPLHIAAHYGNDRIASLLYDRGADVNFAA 246

Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
           KHNITP+HVA KWGK+ MV LL+SKGANIEAKTRDGLTPLHCAARSGH  V+DILIEKGA
Sbjct: 247 KHNITPMHVAAKWGKIKMVNLLMSKGANIEAKTRDGLTPLHCAARSGHHEVVDILIEKGA 306

Query: 181 ALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDL 240
            + SKTK G  PLH+AS    ++  R L+ + A V+  T    T LH A+  G V +  L
Sbjct: 307 PIGSKTKNGLAPLHMASQGDHVDAARILLYHRAPVDEVTVDYLTALHVAAHCGHVRVAKL 366

Query: 241 LLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           LL   A PNA   +G T L+IA K   + V+E L
Sbjct: 367 LLDRNADPNARALNGFTPLHIACKKNRLKVVELL 400

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322778809|gb|EFZ09225.1| hypothetical protein SINV_06859 [Solenopsis invicta]

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 186/274 (67%), Positives = 210/274 (76%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           MAAQENHD VV+YLLSKG NQTLATEDGFTPLAVAMQQGHD+VVAVLLEND++GKV+LPA
Sbjct: 109 MAAQENHDSVVKYLLSKGANQTLATEDGFTPLAVAMQQGHDKVVAVLLENDSRGKVRLPA 168

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
           LHIAAKKDDCKAA LLL NDH+PDV S S FTPLHIAAHYGN  IA LL  K A++N  A
Sbjct: 169 LHIAAKKDDCKAATLLLLNDHNPDVTSKSGFTPLHIAAHYGNDRIASLLYDKGADINFAA 228

Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
           KHNITP+HVA KWGK+ MV LL+SKGANIEAKTRDGLTPLHCAARSGH  V+DILIEKGA
Sbjct: 229 KHNITPMHVAAKWGKIKMVNLLMSKGANIEAKTRDGLTPLHCAARSGHHEVVDILIEKGA 288

Query: 181 ALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDL 240
            + SKTK G  PLH+AS    ++  R L+ + A V+  T    T LH A+  G V +  L
Sbjct: 289 PIGSKTKNGLAPLHMASQGDHVDAARILLYHRAPVDEVTVDYLTALHVAAHCGHVRVAKL 348

Query: 241 LLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           LL   A PNA   +G T L+IA K   I V+E L
Sbjct: 349 LLDRNADPNARALNGFTPLHIACKKNRIKVVELL 382

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235752|ref|XP_001807645.1| PREDICTED: similar to ankyrin 2,3/unc44 [Tribolium castaneum]

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 182/274 (66%), Positives = 214/274 (78%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           MAAQENHDGVV+YLLSKG NQTLATEDGFTPLAVAMQQGHD+VVAVLLENDT+GKV+LPA
Sbjct: 145 MAAQENHDGVVKYLLSKGANQTLATEDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPA 204

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
           LHIAAKKDD KAAALLL+N+H+PDV S S FTPLHIAAHYGN  +A LL  K A+VN  A
Sbjct: 205 LHIAAKKDDVKAAALLLQNEHNPDVTSKSGFTPLHIAAHYGNDKVASLLYDKGADVNYAA 264

Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
           KHNITPLHVA KWGK  MV LL++KGA+I+AKTRDGLTPLHCAARSGHD V+D+L+E GA
Sbjct: 265 KHNITPLHVASKWGKNNMVTLLVAKGADIQAKTRDGLTPLHCAARSGHDQVVDMLLENGA 324

Query: 181 ALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDL 240
            +++KTK G  PLH+A+    ++  R L+ +GA V+  T    T LH A+  G V +  L
Sbjct: 325 PMHAKTKNGLAPLHMAAQGEHVDAARILLYHGAPVDEVTVDYLTALHVAAHCGHVRVAKL 384

Query: 241 LLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           LL  GA PNA   +G T L+IA K   I ++E L
Sbjct: 385 LLDRGADPNARALNGFTPLHIACKKNRIKMVELL 418

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161082106|ref|NP_001097538.1| ankyrin 2, isoform J [Drosophila melanogaster] gi|158028469|gb|ABW08487.1| ankyrin 2, isoform J [Drosophila melanogaster]

 Score =  360 bits (925), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 177/304 (58%), Positives = 218/304 (71%), Gaps = 33/304 (10%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           MAAQENHD VVR LLS G NQ+LATEDGFTPLAVAMQQGHD+VVAVLLE+DT+GKV+LPA
Sbjct: 116 MAAQENHDAVVRLLLSNGANQSLATEDGFTPLAVAMQQGHDKVVAVLLESDTRGKVRLPA 175

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
           LHIAAKKDD KAA LLL+NDH+PDV S S FTPLHIA+HYGN NIA LLIQK A+VN  A
Sbjct: 176 LHIAAKKDDVKAATLLLDNDHNPDVTSKSGFTPLHIASHYGNQNIANLLIQKGADVNYSA 235

Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
           KHNI+PLHVA KWGK  MV LL+ KG NIEAKTRDGLTPLHCAARSGH+ V+D+L+E+GA
Sbjct: 236 KHNISPLHVAAKWGKTNMVSLLLEKGGNIEAKTRDGLTPLHCAARSGHEQVVDMLLERGA 295

Query: 181 ALYSKTKAGFTP---------------------------------LHIASHFGQLNMVRY 207
            + +KTK G  P                                 LH+A+H G + + + 
Sbjct: 296 PISAKTKNGLAPLHMAAQGEHVDAARILLYHRAPVDEVTVDYLTALHVAAHCGHVRVAKL 355

Query: 208 LVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGY 267
           L++  A+ NA    G+TPLH A ++ R+ +++LLL  GA  +ATT  G T L++A  +G 
Sbjct: 356 LLDRNADANARALNGFTPLHIACKKNRLKVVELLLRHGASISATTESGLTPLHVAAFMGC 415

Query: 268 ISVI 271
           ++++
Sbjct: 416 MNIV 419

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161082096|ref|NP_001097535.1| ankyrin 2, isoform F [Drosophila melanogaster] gi|158028467|gb|ABW08485.1| ankyrin 2, isoform F [Drosophila melanogaster]

 Score =  360 bits (925), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 177/304 (58%), Positives = 218/304 (71%), Gaps = 33/304 (10%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           MAAQENHD VVR LLS G NQ+LATEDGFTPLAVAMQQGHD+VVAVLLE+DT+GKV+LPA
Sbjct: 116 MAAQENHDAVVRLLLSNGANQSLATEDGFTPLAVAMQQGHDKVVAVLLESDTRGKVRLPA 175

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
           LHIAAKKDD KAA LLL+NDH+PDV S S FTPLHIA+HYGN NIA LLIQK A+VN  A
Sbjct: 176 LHIAAKKDDVKAATLLLDNDHNPDVTSKSGFTPLHIASHYGNQNIANLLIQKGADVNYSA 235

Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
           KHNI+PLHVA KWGK  MV LL+ KG NIEAKTRDGLTPLHCAARSGH+ V+D+L+E+GA
Sbjct: 236 KHNISPLHVAAKWGKTNMVSLLLEKGGNIEAKTRDGLTPLHCAARSGHEQVVDMLLERGA 295

Query: 181 ALYSKTKAGFTP---------------------------------LHIASHFGQLNMVRY 207
            + +KTK G  P                                 LH+A+H G + + + 
Sbjct: 296 PISAKTKNGLAPLHMAAQGEHVDAARILLYHRAPVDEVTVDYLTALHVAAHCGHVRVAKL 355

Query: 208 LVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGY 267
           L++  A+ NA    G+TPLH A ++ R+ +++LLL  GA  +ATT  G T L++A  +G 
Sbjct: 356 LLDRNADANARALNGFTPLHIACKKNRLKVVELLLRHGASISATTESGLTPLHVAAFMGC 415

Query: 268 ISVI 271
           ++++
Sbjct: 416 MNIV 419

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|320545662|ref|NP_001189064.1| ankyrin 2, isoform S [Drosophila melanogaster] gi|318069159|gb|ADV37501.1| ankyrin 2, isoform S [Drosophila melanogaster]

 Score =  360 bits (925), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 177/304 (58%), Positives = 218/304 (71%), Gaps = 33/304 (10%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           MAAQENHD VVR LLS G NQ+LATEDGFTPLAVAMQQGHD+VVAVLLE+DT+GKV+LPA
Sbjct: 116 MAAQENHDAVVRLLLSNGANQSLATEDGFTPLAVAMQQGHDKVVAVLLESDTRGKVRLPA 175

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
           LHIAAKKDD KAA LLL+NDH+PDV S S FTPLHIA+HYGN NIA LLIQK A+VN  A
Sbjct: 176 LHIAAKKDDVKAATLLLDNDHNPDVTSKSGFTPLHIASHYGNQNIANLLIQKGADVNYSA 235

Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
           KHNI+PLHVA KWGK  MV LL+ KG NIEAKTRDGLTPLHCAARSGH+ V+D+L+E+GA
Sbjct: 236 KHNISPLHVAAKWGKTNMVSLLLEKGGNIEAKTRDGLTPLHCAARSGHEQVVDMLLERGA 295

Query: 181 ALYSKTKAGFTP---------------------------------LHIASHFGQLNMVRY 207
            + +KTK G  P                                 LH+A+H G + + + 
Sbjct: 296 PISAKTKNGLAPLHMAAQGEHVDAARILLYHRAPVDEVTVDYLTALHVAAHCGHVRVAKL 355

Query: 208 LVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGY 267
           L++  A+ NA    G+TPLH A ++ R+ +++LLL  GA  +ATT  G T L++A  +G 
Sbjct: 356 LLDRNADANARALNGFTPLHIACKKNRLKVVELLLRHGASISATTESGLTPLHVAAFMGC 415

Query: 268 ISVI 271
           ++++
Sbjct: 416 MNIV 419

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
WB|WBGene00006780	6994	unc-44 [Caenorhabditis elegans	0.830	0.037	0.568	8.9e-74
UNIPROTKB|F1NJ80	1699	ANK3 "Uncharacterized protein"	0.830	0.155	0.549	6.9e-71
UNIPROTKB|F1NNX8	1737	ANK3 "Uncharacterized protein"	0.830	0.151	0.549	7.3e-71
UNIPROTKB|F1NNX6	1824	ANK3 "Uncharacterized protein"	0.830	0.144	0.549	8.1e-71
UNIPROTKB|F1NNX7	1915	ANK3 "Uncharacterized protein"	0.830	0.137	0.549	9e-71
ZFIN|ZDB-GENE-041010-165	3538	ank2b "ankyrin 2b, neuronal" [	0.827	0.074	0.550	1.2e-70
UNIPROTKB|F1NA51	2890	ANK3 "Uncharacterized protein"	0.830	0.091	0.549	1.8e-70
UNIPROTKB|K7GLA8	1847	ANK3 "Uncharacterized protein"	0.830	0.142	0.541	4.5e-70
MGI|MGI:88026	1961	Ank3 "ankyrin 3, epithelial" [	0.830	0.134	0.545	9.3e-70
RGD|620156	843	Ank2 "ankyrin 2, neuronal" [Ra	0.827	0.311	0.538	1.4e-69

WB|WBGene00006780 unc-44 [Caenorhabditis elegans (taxid:6239)]

 Score = 766 (274.7 bits), Expect = 8.9e-74, P = 8.9e-74
 Identities = 150/264 (56%), Positives = 191/264 (72%)

Query:     1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
             MAAQENH+ VV+YLL  G NQ L+TEDGFTPLAVA+QQGHDRVVAVLLEND+KGKV+LPA
Sbjct:   138 MAAQENHEEVVKYLLKHGANQALSTEDGFTPLAVALQQGHDRVVAVLLENDSKGKVRLPA 197

Query:    61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
             LHI              +N+H+PDV S S FTPLHIAAHYG+ N+ +LL++K ANVN QA
Sbjct:   198 LHIAAKKDDTTAATLLLQNEHNPDVTSKSGFTPLHIAAHYGHENVGQLLLEKGANVNYQA 257

Query:   121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
             +HNI+PLHVA KWG+  M  LL+S+GA I+++T+D LTPLHCAARSGHD V+D+L+ +GA
Sbjct:   258 RHNISPLHVATKWGRTNMANLLLSRGAIIDSRTKDLLTPLHCAARSGHDQVVDLLVVQGA 317

Query:   181 ALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDL 240
              + +KTK G  PLH+A+    ++  R L+ + A V+  T    TPLH A+  G V +  L
Sbjct:   318 PISAKTKNGLAPLHMAAQGDHVDAARTLLYHRAPVDDVTVDYLTPLHVAAHCGHVRVAKL 377

Query:   241 LLGAGAQPNATTNHGQTALNIAQK 264
             LL   A PN+   +G T L+IA K
Sbjct:   378 LLDRSADPNSRALNGFTPLHIACK 401

GO:0007165 "signal transduction" evidence=IEA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0040017 "positive regulation of locomotion" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0007126 "meiosis" evidence=IMP

GO:0016358 "dendrite development" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0016328 "lateral plasma membrane" evidence=IDA

GO:0033563 "dorsal/ventral axon guidance" evidence=IGI

GO:0050839 "cell adhesion molecule binding" evidence=IPI

UNIPROTKB|F1NJ80 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 730 (262.0 bits), Expect = 6.9e-71, P = 6.9e-71
 Identities = 145/264 (54%), Positives = 189/264 (71%)

Query:     1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
             MAAQENH  VV++LL  G +Q+LATEDGFTPLAVA+QQGHD+VV++LLENDTKGKV+LPA
Sbjct:   104 MAAQENHLEVVKFLLDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPA 163

Query:    61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
             LHI              +NDH+ DV+S S FTPLHIAAHYGN N+A LL+ + A V+  A
Sbjct:   164 LHIAARKDDTKAAALLLQNDHNADVESKSGFTPLHIAAHYGNINVATLLLNRGAAVDFTA 223

Query:   121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
             +++ITPLHVA K G   MV+LL+ +GA I+AKTRDGLTPLHC ARSGH+ V+++L+++GA
Sbjct:   224 RNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRGA 283

Query:   181 ALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDL 240
              + SKTK G +PLH+A+    LN V+ L+++   V+  TN   T LH A+  G   +  +
Sbjct:   284 PILSKTKNGLSPLHMATQGDHLNCVQLLIQHNVPVDDVTNDYLTALHVAAHCGHYKVAKV 343

Query:   241 LLGAGAQPNATTNHGQTALNIAQK 264
             LL   A PNA   +G T L+IA K
Sbjct:   344 LLDKKANPNAKALNGFTPLHIACK 367

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NNX8 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 730 (262.0 bits), Expect = 7.3e-71, P = 7.3e-71
 Identities = 145/264 (54%), Positives = 189/264 (71%)

Query:     1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
             MAAQENH  VV++LL  G +Q+LATEDGFTPLAVA+QQGHD+VV++LLENDTKGKV+LPA
Sbjct:   104 MAAQENHLEVVKFLLDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPA 163

Query:    61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
             LHI              +NDH+ DV+S S FTPLHIAAHYGN N+A LL+ + A V+  A
Sbjct:   164 LHIAARKDDTKAAALLLQNDHNADVESKSGFTPLHIAAHYGNINVATLLLNRGAAVDFTA 223

Query:   121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
             +++ITPLHVA K G   MV+LL+ +GA I+AKTRDGLTPLHC ARSGH+ V+++L+++GA
Sbjct:   224 RNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRGA 283

Query:   181 ALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDL 240
              + SKTK G +PLH+A+    LN V+ L+++   V+  TN   T LH A+  G   +  +
Sbjct:   284 PILSKTKNGLSPLHMATQGDHLNCVQLLIQHNVPVDDVTNDYLTALHVAAHCGHYKVAKV 343

Query:   241 LLGAGAQPNATTNHGQTALNIAQK 264
             LL   A PNA   +G T L+IA K
Sbjct:   344 LLDKKANPNAKALNGFTPLHIACK 367

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NNX6 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 730 (262.0 bits), Expect = 8.1e-71, P = 8.1e-71
 Identities = 145/264 (54%), Positives = 189/264 (71%)

Query:     1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
             MAAQENH  VV++LL  G +Q+LATEDGFTPLAVA+QQGHD+VV++LLENDTKGKV+LPA
Sbjct:   104 MAAQENHLEVVKFLLDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPA 163

Query:    61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
             LHI              +NDH+ DV+S S FTPLHIAAHYGN N+A LL+ + A V+  A
Sbjct:   164 LHIAARKDDTKAAALLLQNDHNADVESKSGFTPLHIAAHYGNINVATLLLNRGAAVDFTA 223

Query:   121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
             +++ITPLHVA K G   MV+LL+ +GA I+AKTRDGLTPLHC ARSGH+ V+++L+++GA
Sbjct:   224 RNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRGA 283

Query:   181 ALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDL 240
              + SKTK G +PLH+A+    LN V+ L+++   V+  TN   T LH A+  G   +  +
Sbjct:   284 PILSKTKNGLSPLHMATQGDHLNCVQLLIQHNVPVDDVTNDYLTALHVAAHCGHYKVAKV 343

Query:   241 LLGAGAQPNATTNHGQTALNIAQK 264
             LL   A PNA   +G T L+IA K
Sbjct:   344 LLDKKANPNAKALNGFTPLHIACK 367

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NNX7 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 730 (262.0 bits), Expect = 9.0e-71, P = 9.0e-71
 Identities = 145/264 (54%), Positives = 189/264 (71%)

Query:     1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
             MAAQENH  VV++LL  G +Q+LATEDGFTPLAVA+QQGHD+VV++LLENDTKGKV+LPA
Sbjct:   104 MAAQENHLEVVKFLLDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPA 163

Query:    61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
             LHI              +NDH+ DV+S S FTPLHIAAHYGN N+A LL+ + A V+  A
Sbjct:   164 LHIAARKDDTKAAALLLQNDHNADVESKSGFTPLHIAAHYGNINVATLLLNRGAAVDFTA 223

Query:   121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
             +++ITPLHVA K G   MV+LL+ +GA I+AKTRDGLTPLHC ARSGH+ V+++L+++GA
Sbjct:   224 RNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRGA 283

Query:   181 ALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDL 240
              + SKTK G +PLH+A+    LN V+ L+++   V+  TN   T LH A+  G   +  +
Sbjct:   284 PILSKTKNGLSPLHMATQGDHLNCVQLLIQHNVPVDDVTNDYLTALHVAAHCGHYKVAKV 343

Query:   241 LLGAGAQPNATTNHGQTALNIAQK 264
             LL   A PNA   +G T L+IA K
Sbjct:   344 LLDKKANPNAKALNGFTPLHIACK 367

GO:0007165 "signal transduction" evidence=IEA

ZFIN|ZDB-GENE-041010-165 ank2b "ankyrin 2b, neuronal" [Danio rerio (taxid:7955)]

 Score = 733 (263.1 bits), Expect = 1.2e-70, P = 1.2e-70
 Identities = 146/265 (55%), Positives = 190/265 (71%)

Query:     1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
             MA+QENH  VVRYLL  GGNQ++ATEDGFTPLA+A+QQGH++VV++LLENDTKGKV+LPA
Sbjct:   137 MASQENHLDVVRYLLENGGNQSIATEDGFTPLAIALQQGHNQVVSILLENDTKGKVRLPA 196

Query:    61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
             LHI              +NDH+ DV+S S FTPLHIAAHYGN N+A LL+ + A V+  A
Sbjct:   197 LHIAARKDDTKSAALLLQNDHNADVQSKSGFTPLHIAAHYGNVNVATLLLNRGAAVDFTA 256

Query:   121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
             ++ ITPLHVA K G   MV LL+ +GA I+AKTRDGLTPLHCAARSGHD  +++L+E+GA
Sbjct:   257 RNGITPLHVASKRGNTNMVHLLLDRGAQIDAKTRDGLTPLHCAARSGHDTAVELLLERGA 316

Query:   181 ALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGY-TPLHQASQQGRVLIID 239
              + ++TK G +PLH+A+    +  V++L+++ A V+  T L Y T LH A+  G   +  
Sbjct:   317 PMLARTKNGLSPLHMAAQGDHVECVKHLLQHKAPVDDVT-LDYLTALHVAAHCGHYRVTK 375

Query:   240 LLLGAGAQPNATTNHGQTALNIAQK 264
             LLL   A PNA   +G T L+IA K
Sbjct:   376 LLLDKRANPNARALNGFTPLHIACK 400

GO:0006508 "proteolysis" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1NA51 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 730 (262.0 bits), Expect = 1.8e-70, P = 1.8e-70
 Identities = 145/264 (54%), Positives = 189/264 (71%)

Query:     1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
             MAAQENH  VV++LL  G +Q+LATEDGFTPLAVA+QQGHD+VV++LLENDTKGKV+LPA
Sbjct:   146 MAAQENHLEVVKFLLDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPA 205

Query:    61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
             LHI              +NDH+ DV+S S FTPLHIAAHYGN N+A LL+ + A V+  A
Sbjct:   206 LHIAARKDDTKAAALLLQNDHNADVESKSGFTPLHIAAHYGNINVATLLLNRGAAVDFTA 265

Query:   121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
             +++ITPLHVA K G   MV+LL+ +GA I+AKTRDGLTPLHC ARSGH+ V+++L+++GA
Sbjct:   266 RNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRGA 325

Query:   181 ALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDL 240
              + SKTK G +PLH+A+    LN V+ L+++   V+  TN   T LH A+  G   +  +
Sbjct:   326 PILSKTKNGLSPLHMATQGDHLNCVQLLIQHNVPVDDVTNDYLTALHVAAHCGHYKVAKV 385

Query:   241 LLGAGAQPNATTNHGQTALNIAQK 264
             LL   A PNA   +G T L+IA K
Sbjct:   386 LLDKKANPNAKALNGFTPLHIACK 409

GO:0000281 "cytokinesis after mitosis" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0009925 "basal plasma membrane" evidence=IEA

GO:0014704 "intercalated disc" evidence=IEA

GO:0016328 "lateral plasma membrane" evidence=IEA

GO:0019228 "regulation of action potential in neuron" evidence=IEA

GO:0033268 "node of Ranvier" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

GO:0043194 "axon initial segment" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0050808 "synapse organization" evidence=IEA

GO:0071709 "membrane assembly" evidence=IEA

GO:0072660 "maintenance of protein location in plasma membrane" evidence=IEA

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

UNIPROTKB|K7GLA8 ANK3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 715 (256.8 bits), Expect = 4.5e-70, Sum P(2) = 4.5e-70
 Identities = 143/264 (54%), Positives = 188/264 (71%)

Query:     1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
             MAAQENH  VV++LL  G +Q+LATEDGFTPLAVA+QQGHD+VV++LLENDTKGKV+LPA
Sbjct:   108 MAAQENHLEVVKFLLDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPA 167

Query:    61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
             LHI              +ND++ DV+S S FTPLHIAAHYGN N+A LL+ + A V+  A
Sbjct:   168 LHIAARKDDTKAAALLLQNDNNADVESKSGFTPLHIAAHYGNINVATLLLNRAAAVDFTA 227

Query:   121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
             +++ITPLHVA K G   MV+LL+ +GA I+AKTRDGLTPLHC ARSGH+ V+++L+++ A
Sbjct:   228 RNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRAA 287

Query:   181 ALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDL 240
              + SKTK G +PLH+A+    LN V+ L+++   V+  TN   T LH A+  G   +  +
Sbjct:   288 PILSKTKNGLSPLHMATQGDHLNCVQLLLQHNVPVDDVTNDYLTALHVAAHCGHYKVAKV 347

Query:   241 LLGAGAQPNATTNHGQTALNIAQK 264
             LL   A PNA   +G T L+IA K
Sbjct:   348 LLDKKANPNAKALNGFTPLHIACK 371

GO:0007165 "signal transduction" evidence=IEA

MGI|MGI:88026 Ank3 "ankyrin 3, epithelial" [Mus musculus (taxid:10090)]

 Score = 715 (256.8 bits), Expect = 9.3e-70, Sum P(2) = 9.3e-70
 Identities = 144/264 (54%), Positives = 187/264 (70%)

Query:     1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
             MAAQENH  VVR+LL  G +Q+LATEDGFTPLAVA+QQGHD+VV++LLENDTKGKV+LPA
Sbjct:   129 MAAQENHLEVVRFLLDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPA 188

Query:    61 LHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
             LHI              +ND + DV+S S FTPLHIAAHYGN N+A LL+ + A V+  A
Sbjct:   189 LHIAARKDDTKAAALLLQNDTNADVESKSGFTPLHIAAHYGNINVATLLLNRAAAVDFTA 248

Query:   121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
             +++ITPLHVA K G   MV+LL+ +GA I+AKTRDGLTPLHC ARSGH+ V+++L+++ A
Sbjct:   249 RNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRSA 308

Query:   181 ALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDL 240
              + SKTK G +PLH+A+    LN V+ L+++   V+  TN   T LH A+  G   +  +
Sbjct:   309 PILSKTKNGLSPLHMATQGDHLNCVQLLLQHNVPVDDVTNDYLTALHVAAHCGHYKVAKV 368

Query:   241 LLGAGAQPNATTNHGQTALNIAQK 264
             LL   A PNA   +G T L+IA K
Sbjct:   369 LLDKKASPNAKALNGFTPLHIACK 392

GO:0000281 "cytokinesis after mitosis" evidence=ISO

GO:0005200 "structural constituent of cytoskeleton" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0007009 "plasma membrane organization" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0007409 "axonogenesis" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0010650 "positive regulation of cell communication by electrical coupling" evidence=ISO

GO:0014704 "intercalated disc" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IDA

GO:0016323 "basolateral plasma membrane" evidence=ISO

GO:0016328 "lateral plasma membrane" evidence=ISO

GO:0016529 "sarcoplasmic reticulum" evidence=ISO

GO:0019228 "regulation of action potential in neuron" evidence=IMP

GO:0030018 "Z disc" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0030424 "axon" evidence=IDA

GO:0030425 "dendrite" evidence=ISO

GO:0031594 "neuromuscular junction" evidence=ISO

GO:0033268 "node of Ranvier" evidence=ISO;IDA

GO:0033270 "paranode region of axon" evidence=IDA

GO:0034112 "positive regulation of homotypic cell-cell adhesion" evidence=ISO

GO:0042383 "sarcolemma" evidence=ISO

GO:0043001 "Golgi to plasma membrane protein transport" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0043194 "axon initial segment" evidence=ISO;IDA

GO:0045184 "establishment of protein localization" evidence=ISO

GO:0045202 "synapse" evidence=IDA

GO:0045211 "postsynaptic membrane" evidence=ISO

GO:0045760 "positive regulation of action potential" evidence=TAS

GO:0050808 "synapse organization" evidence=IMP

GO:0071709 "membrane assembly" evidence=ISO

GO:0072659 "protein localization to plasma membrane" evidence=ISO;IDA;IMP

GO:0072660 "maintenance of protein location in plasma membrane" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO;IMP

GO:0090314 "positive regulation of protein targeting to membrane" evidence=ISO

RGD|620156 Ank2 "ankyrin 2, neuronal" [Rattus norvegicus (taxid:10116)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 147/273 (53%), Positives = 188/273 (68%)

Query:     1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
             MAAQENH  VV+YLL  G NQ+ ATEDGFTPLAVA+QQGH++ VA+LLENDTKGKV+LPA
Sbjct:   101 MAAQENHIDVVKYLLENGANQSTATEDGFTPLAVALQQGHNQAVAILLENDTKGKVRLPA 160

Query:    61 LHIXXXXXXXXXXXXXXENDHSPDVKSN--------SHFTPLHIAAHYGNTNIAELLIQK 112
             LHI              +NDH+ DV+S         S FTPLHIAAHYGN N+A LL+ +
Sbjct:   161 LHIAARKDDTKSAALLLQNDHNADVQSKMMVNRTTESGFTPLHIAAHYGNVNVATLLLNR 220

Query:   113 HANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVI 172
              A V+  A++ ITPLHVA K G   MV+LL+ +G  I+AKTRDGLTPLHCAARSGHD V+
Sbjct:   221 GAAVDFTARNGITPLHVASKRGNTNMVKLLLDRGGQIDAKTRDGLTPLHCAARSGHDQVV 280

Query:   173 DILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGY-TPLHQASQ 231
             ++L+E+GA L ++TK G +PLH+A+    +  V++L+++ A V+  T L Y T LH A+ 
Sbjct:   281 ELLLERGAPLLARTKNGLSPLHMAAQGDHVECVKHLLQHKAPVDDVT-LDYLTALHVAAH 339

Query:   232 QGRVLIIDLLLGAGAQPNATTNHGQTALNIAQK 264
              G   +  LLL   A PNA   +G T L+IA K
Sbjct:   340 CGHYRVTKLLLDKRANPNARALNGFTPLHIACK 372

GO:0002027 "regulation of heart rate" evidence=ISO

GO:0003283 "atrial septum development" evidence=ISO

GO:0005200 "structural constituent of cytoskeleton" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0005887 "integral to plasma membrane" evidence=ISO

GO:0006874 "cellular calcium ion homeostasis" evidence=ISO

GO:0007399 "nervous system development" evidence=IEP

GO:0008104 "protein localization" evidence=ISO

GO:0010628 "positive regulation of gene expression" evidence=ISO

GO:0010881 "regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion" evidence=ISO

GO:0010882 "regulation of cardiac muscle contraction by calcium ion signaling" evidence=ISO

GO:0014704 "intercalated disc" evidence=ISO

GO:0015459 "potassium channel regulator activity" evidence=ISO

GO:0016323 "basolateral plasma membrane" evidence=ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030018 "Z disc" evidence=ISO

GO:0030315 "T-tubule" evidence=ISO

GO:0030507 "spectrin binding" evidence=ISO

GO:0030674 "protein binding, bridging" evidence=ISO

GO:0030913 "paranodal junction assembly" evidence=IEP

GO:0031430 "M band" evidence=ISO

GO:0031672 "A band" evidence=ISO

GO:0033292 "T-tubule organization" evidence=ISO

GO:0033365 "protein localization to organelle" evidence=ISO

GO:0034394 "protein localization to cell surface" evidence=ISO

GO:0034613 "cellular protein localization" evidence=ISO

GO:0042383 "sarcolemma" evidence=ISO

GO:0043005 "neuron projection" evidence=IDA

GO:0043034 "costamere" evidence=ISO

GO:0043268 "positive regulation of potassium ion transport" evidence=ISO

GO:0044325 "ion channel binding" evidence=ISO

GO:0045121 "membrane raft" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0050821 "protein stabilization" evidence=ISO

GO:0051117 "ATPase binding" evidence=ISO

GO:0051279 "regulation of release of sequestered calcium ion into cytosol" evidence=ISO

GO:0051597 "response to methylmercury" evidence=IEP

GO:0051924 "regulation of calcium ion transport" evidence=ISO

GO:0051928 "positive regulation of calcium ion transport" evidence=ISO

GO:0055117 "regulation of cardiac muscle contraction" evidence=ISO

GO:0060048 "cardiac muscle contraction" evidence=ISO

GO:0060307 "regulation of ventricular cardiac muscle cell membrane repolarization" evidence=ISO

GO:0070972 "protein localization to endoplasmic reticulum" evidence=ISO

GO:0072659 "protein localization to plasma membrane" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO

GO:0086004 "regulation of cardiac muscle cell contraction" evidence=ISO

GO:0086005 "regulation of ventricular cardiac muscle cell action potential" evidence=ISO

GO:0086014 "regulation of atrial cardiac muscle cell action potential" evidence=ISO

GO:0086015 "regulation of SA node cell action potential" evidence=ISO

GO:0086036 "regulation of cardiac muscle cell membrane potential" evidence=ISO

GO:0086066 "atrial cardiac muscle cell to AV node cell communication" evidence=ISO

GO:0086070 "SA node cell to atrial cardiac muscle cell communication" evidence=ISO

GO:0086091 "regulation of heart rate by cardiac conduction" evidence=ISO

GO:1901018 "positive regulation of potassium ion transmembrane transporter activity" evidence=ISO

GO:1901019 "regulation of calcium ion transmembrane transporter activity" evidence=ISO

GO:1901021 "positive regulation of calcium ion transmembrane transporter activity" evidence=ISO

GO:2001257 "regulation of cation channel activity" evidence=ISO

GO:2001259 "positive regulation of cation channel activity" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
G5E8K5	ANK3_MOUSE	No assigned EC number	0.5839	0.8364	0.1356	yes	N/A
Q12955	ANK3_HUMAN	No assigned EC number	0.5802	0.8364	0.0607	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	318
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-40
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-39
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-36
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-36
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-34
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-28
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-25
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-25
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-25
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	9e-23
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-22
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-22
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-22
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-21
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	9e-20
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-19
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-18
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-18
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-17
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-17
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	8e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-16
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-16
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	5e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-15
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	6e-15
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-14
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	6e-14
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	4e-13
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	9e-13
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-12
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	7e-12
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	8e-12
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-11
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	9e-11
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	1e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-09
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-09
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	8e-09
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-08
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-08
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	3e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-08
PHA02716	764	PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provi	4e-08
pfam00023	33	pfam00023, Ank, Ankyrin repeat	4e-08
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	5e-08
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	5e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-07
PHA02884	300	PHA02884, PHA02884, ankyrin repeat protein; Provis	3e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	8e-07
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	8e-07
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	9e-07
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-06
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	2e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	4e-06
PHA02989	494	PHA02989, PHA02989, ankyrin repeat protein; Provis	4e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-05
smart00248	30	smart00248, ANK, ankyrin repeats	2e-05
PHA02989	494	PHA02989, PHA02989, ankyrin repeat protein; Provis	3e-05
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	4e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	4e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	9e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	1e-04
smart00248	30	smart00248, ANK, ankyrin repeats	2e-04
PHA02795	437	PHA02795, PHA02795, ankyrin-like protein; Provisio	2e-04
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	3e-04
smart00248	30	smart00248, ANK, ankyrin repeats	3e-04
smart00248	30	smart00248, ANK, ankyrin repeats	3e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	3e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	4e-04
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	5e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	7e-04
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	0.001
PHA02743	166	PHA02743, PHA02743, Viral ankyrin protein; Provisi	0.001
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.002
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.002
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	0.003
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	0.003
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  137 bits (347), Expect = 1e-40
 Identities = 55/126 (43%), Positives = 87/126 (69%)

Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
           N + +   TPLH+A   G + +V+LL+  GA++ AK  DG TPLH AA++GH  ++ +L+
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 177 EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
           EKGA + ++ K G TPLH+A+  G L++V+ L+++GA+VNA    G TPLH A++ G + 
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLE 120

Query: 237 IIDLLL 242
           ++ LLL
Sbjct: 121 VVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  134 bits (339), Expect = 3e-39
 Identities = 51/126 (40%), Positives = 85/126 (67%)

Query: 84  DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI 143
           + +     TPLH+AA  G+  + +LL++  A+VN +     TPLH+A K G + +V+LL+
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 144 SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLN 203
            KGA++ A+ +DG TPLH AAR+G+ +V+ +L++ GA + ++ K G TPLH+A+  G L 
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLE 120

Query: 204 MVRYLV 209
           +V+ L+
Sbjct: 121 VVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  125 bits (317), Expect = 5e-36
 Identities = 50/117 (42%), Positives = 75/117 (64%)

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
            LH+AA     +   LLLEN    + K N   TPLH+AA  G+  I +LL++K A+VN +
Sbjct: 10  PLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR 69

Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
            K   TPLH+A + G + +V+LL+  GA++ A+ +DG TPLH AA++GH  V+ +L+
Sbjct: 70  DKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  125 bits (316), Expect = 8e-36
 Identities = 55/124 (44%), Positives = 80/124 (64%)

Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
           A+  DG TPLH AA +GH  V+ +L+E GA + +K   G TPLH+A+  G L +V+ L+E
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 211 NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISV 270
            GA+VNA    G TPLH A++ G + ++ LLL  GA  NA    G+T L++A K G++ V
Sbjct: 62  KGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEV 121

Query: 271 IETL 274
           ++ L
Sbjct: 122 VKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score =  129 bits (326), Expect = 2e-34
 Identities = 66/222 (29%), Positives = 95/222 (42%), Gaps = 25/222 (11%)

Query: 50  NDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYG-----NTN 104
           ND   K  +  L++A +  +     +LL+N    +  + ++ TPLH  ++          
Sbjct: 28  NDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKE 87

Query: 105 IAELLIQKHANVNNQAKHNITPLHVA--CKWGKVAMVELLISKGANIEAKTRDGLTPLHC 162
           I +LL++  ANVN    + ITPL  A   K    ++VE L+  GAN+  K  DG   LH 
Sbjct: 88  IVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHL 147

Query: 163 AARSGHD------------------NVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNM 204
              S                     N ++ L+  G  +  K   GFTPLH A +      
Sbjct: 148 YLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEF 207

Query: 205 VRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 246
           V+YL++ GAN N     G TPLH A       I  LLL  G 
Sbjct: 208 VKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGP 249

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score =  113 bits (285), Expect = 2e-28
 Identities = 76/263 (28%), Positives = 117/263 (44%), Gaps = 35/263 (13%)

Query: 9   GVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKD 68
             VR LL+ G +     E G TPL + +    ++V  ++                     
Sbjct: 28  EEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVR-------------------- 67

Query: 69  DCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNT-NIAELLIQKHANVNNQAKHNITPL 127
                 LLLE     +      FTPLH+  +   T ++ +LLI+  A+VN + K   TPL
Sbjct: 68  ------LLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPL 121

Query: 128 HVAC--KWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNV--IDILIEKGAALY 183
           HV          ++ LL+ KGA++ A    G+TPL    +S + NV  + +LI+ GA +Y
Sbjct: 122 HVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVY 181

Query: 184 SKTKAGFTPLHIASHFGQLN--MVRYLVENGANVNATTNLGYTPLHQASQQG--RVLIID 239
           +      + LH      +    +VR L+  G +  AT  LG TPLH  +     +  ++ 
Sbjct: 182 AVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVL 241

Query: 240 LLLGAGAQPNATTNHGQTALNIA 262
            LL AG   NA   +GQT L+ A
Sbjct: 242 PLLIAGISINARNRYGQTPLHYA 264

Length = 471

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 96.9 bits (242), Expect = 2e-25
 Identities = 37/87 (42%), Positives = 58/87 (66%), Gaps = 2/87 (2%)

Query: 94  LHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKT 153
           LH+AA  GN  + +LL++K A+VN       T LH+A + G + +V+LL+  GA++ AK 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 154 RDGLTPLHCAARSGHDNVIDILIEKGA 180
           +DG T LH AAR+G+  ++ +L+E GA
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 97.1 bits (242), Expect = 6e-25
 Identities = 45/143 (31%), Positives = 65/143 (45%), Gaps = 29/143 (20%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           +AA   H  VV+ LL  G +      DG TP                             
Sbjct: 13  LAASNGHLEVVKLLLENGADVNAKDNDGRTP----------------------------- 43

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
           LH+AAK    +   LLLE     + +     TPLH+AA  GN ++ +LL++  A+VN + 
Sbjct: 44  LHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARD 103

Query: 121 KHNITPLHVACKWGKVAMVELLI 143
           K   TPLH+A K G + +V+LL+
Sbjct: 104 KDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 95.8 bits (239), Expect = 7e-25
 Identities = 38/92 (41%), Positives = 61/92 (66%), Gaps = 2/92 (2%)

Query: 127 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 186
           LH+A K G + +V+LL+ KGA++     D  T LH AAR+G+  ++ +L+E GA + +K 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 187 KAGFTPLHIASHFGQLNMVRYLVENGANVNAT 218
           K G T LH+A+  G L +V+ L+E+GA++N  
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 94.5 bits (234), Expect = 9e-23
 Identities = 57/181 (31%), Positives = 85/181 (46%), Gaps = 9/181 (4%)

Query: 71  KAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNI-TPLHV 129
             A LLL +    +         L +A     +    LL             +   PLH 
Sbjct: 20  LVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHS 79

Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDN-----VIDILIEKGAALYS 184
           A   G   +V+LL++ GA++ AK  DG TPLH AA +G+       V  +L+E GA L  
Sbjct: 80  AASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV 139

Query: 185 KT---KAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 241
                + G TPLH A+  G  ++V  L+E GA+ N+  + G T L  A++ GR+ ++ LL
Sbjct: 140 NNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLL 199

Query: 242 L 242
           L
Sbjct: 200 L 200

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 89.2 bits (222), Expect = 1e-22
 Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 2/92 (2%)

Query: 160 LHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATT 219
           LH AA++G+  ++ +L+EKGA +        T LH+A+  G L +V+ L+E+GA+VNA  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 220 NLGYTPLHQASQQGRVLIIDLLLGAGAQPNAT 251
             G T LH A++ G + I+ LLL  GA  N  
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 97.6 bits (243), Expect = 1e-22
 Identities = 72/261 (27%), Positives = 127/261 (48%), Gaps = 7/261 (2%)

Query: 9   GVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKV--KLPALHIAAK 66
            VV+ LL++G N         TPL +  ++ +   +  ++ +  K  V   L A+  A  
Sbjct: 51  DVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFN 110

Query: 67  KDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNI-T 125
             + +   ++L N +      +  +             I +LL+   A++N + +H   T
Sbjct: 111 NRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNT 170

Query: 126 PLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSK 185
            LH A +     + ELL+S GAN+    +   +PLH A +  +  ++ IL+E GA+  ++
Sbjct: 171 ALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDAR 230

Query: 186 TKAGFTPLHIA-SHFGQLNMVRYLVENGANVNA-TTNLGYTPLHQASQQGRVLIIDLLLG 243
            K G TPLHI+  +    ++++ L+E+G +VNA +  LG T LH + +  R L   LLL 
Sbjct: 231 DKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKSERKL--KLLLE 288

Query: 244 AGAQPNATTNHGQTALNIAQK 264
            GA  N+  ++  T L+ A K
Sbjct: 289 YGADINSLNSYKLTPLSSAVK 309

Length = 477

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 89.2 bits (222), Expect = 2e-22
 Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 2/92 (2%)

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
           LH+AAK  + +   LLLE     ++      T LH+AA  GN  I +LL++  A+VN + 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAK 152
           K   T LH+A + G + +V+LL+  GA+I  K
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 93.5 bits (232), Expect = 2e-21
 Identities = 67/245 (27%), Positives = 108/245 (44%), Gaps = 31/245 (12%)

Query: 10  VVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDD 69
           + R LL  G N      DG +P+ +AM                             K  D
Sbjct: 17  IARRLLDIGINPNFEIYDGISPIKLAM-----------------------------KFRD 47

Query: 70  CKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA-KHNITPLH 128
            +A  LL+++   PDVK     + LH A   G+    E L+      ++   K  +TPLH
Sbjct: 48  SEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLH 107

Query: 129 VACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKA 188
           +A    K+ +++LLI++GA+ +    D  +PLH A   G    I++LI+  A L  +   
Sbjct: 108 LATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCC 167

Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLG-YTPLHQASQQGRVLIIDLLLGAGAQ 247
           G TPL IA   G + + + L+++GAN++     G    L  A +  ++ I+ L +  GA 
Sbjct: 168 GCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGAD 227

Query: 248 PNATT 252
            N   
Sbjct: 228 CNIMF 232

Length = 413

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 88.9 bits (220), Expect = 9e-20
 Identities = 76/246 (30%), Positives = 122/246 (49%), Gaps = 11/246 (4%)

Query: 31  PLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSH 90
           PL  A++ G   ++ +L++N     + LP   I  +KD  K    +L+     ++K    
Sbjct: 71  PLLTAIKIGAHDIIKLLIDNGVDTSI-LPIPCI--EKDMIKT---ILDCGIDVNIKDAEL 124

Query: 91  FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
            T LH A   G+    ++L +  A+VN +  +   P+H+A K     +++LL+ KGA   
Sbjct: 125 KTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN 184

Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
            K  +G +PLH AA  G    I +LI+ G  + +K K GFTPLH A    + + +  L+ 
Sbjct: 185 VKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLIN 243

Query: 211 NGANVNATTNLGYTPLHQASQQG-RVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYIS 269
           N A++N     G TPLH A      + IID+LL   A  +   N G+  ++ A K  YI+
Sbjct: 244 N-ASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFK--YIN 300

Query: 270 VIETLK 275
               +K
Sbjct: 301 KDPVIK 306

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 87.3 bits (216), Expect = 3e-19
 Identities = 69/271 (25%), Positives = 122/271 (45%), Gaps = 31/271 (11%)

Query: 16  SKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLE-----NDTKGKVKLPALHIAAKKDDC 70
           +KG    ++ ++  TPL  A++ G  ++V + ++     N    K+  P L  A K    
Sbjct: 23  NKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLL-TAIKIGAH 81

Query: 71  KAAALLLEN--DHS----PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNI 124
               LL++N  D S    P +                  ++ + ++    +VN +     
Sbjct: 82  DIIKLLIDNGVDTSILPIPCI----------------EKDMIKTILDCGIDVNIKDAELK 125

Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
           T LH A K G +  +++L   GA++  +  +G  P+H A +    ++I +L+EKGA    
Sbjct: 126 TFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANV 185

Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 244
           K   G +PLH A+ +G    ++ L+++G ++      G+TPLH A    R   I+LL+  
Sbjct: 186 KDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRS-AIELLIN- 243

Query: 245 GAQPNATTNHGQTALNIA-QKLGYISVIETL 274
            A  N     G T L+ A      I +I+ L
Sbjct: 244 NASINDQDIDGSTPLHHAINPPCDIDIIDIL 274

Length = 434

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 83.5 bits (206), Expect = 5e-18
 Identities = 50/188 (26%), Positives = 91/188 (48%), Gaps = 1/188 (0%)

Query: 73  AALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACK 132
           A  LL+   +P+ +     +P+ +A  + ++   +LL++  A  + +     + LH A +
Sbjct: 18  ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVE 77

Query: 133 WGKVAMVELLISKGANI-EAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFT 191
            G V  VE L+  G    +   +DG+TPLH A      +++ +LI +GA         F+
Sbjct: 78  EGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFS 137

Query: 192 PLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNAT 251
           PLH+A   G +  +  L+++ A ++     G TPL  A  +G + I  +LL +GA  +  
Sbjct: 138 PLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYF 197

Query: 252 TNHGQTAL 259
             +G  A 
Sbjct: 198 GKNGCVAA 205

Length = 413

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 83.5 bits (207), Expect = 7e-18
 Identities = 50/148 (33%), Positives = 77/148 (52%), Gaps = 7/148 (4%)

Query: 135 KVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDI---LIEKGAALYSKTKAGFT 191
            V  V  L++ GA++  +   G TPLH       + V DI   L+E GA + +  + GFT
Sbjct: 26  TVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFT 85

Query: 192 PLHIASHFGQ-LNMVRYLVENGANVNATTNLGYTPLHQ--ASQQGRVLIIDLLLGAGAQP 248
           PLH+  +    L++++ L++ GA+VNA   +G TPLH   +       +I LLL  GA  
Sbjct: 86  PLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV 145

Query: 249 NATTNHGQTALNIAQKLGYISVIETLKI 276
           NA   +G T L +  K    +V E L++
Sbjct: 146 NALDLYGMTPLAVLLKSRNANV-ELLRL 172

Length = 471

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 82.4 bits (203), Expect = 2e-17
 Identities = 77/268 (28%), Positives = 127/268 (47%), Gaps = 15/268 (5%)

Query: 4   QENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKV----KLP 59
           Q++   +   LL  G +         TP+  A ++G+ ++V +LL       +     L 
Sbjct: 154 QQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLS 213

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNI--AELLIQKHANVN 117
            L  A    +      +++N      +SN +   L +     N ++  + LL     +VN
Sbjct: 214 VLECAVDSKNIDTIKAIIDN------RSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVN 267

Query: 118 NQAKHNITPLHVACKWGKVA-MVELLISKGANIEAKTRDGLTPLHCAARSGHDNV-IDIL 175
           +      TPLH A +   ++ +V  L+ +GA++ AK   G TPL+  A++G+D   I  L
Sbjct: 268 SIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTL 327

Query: 176 IEKGAALYSKTKAGFTPLHIASHFGQL-NMVRYLVENGANVNATTNLGYTPLHQASQQGR 234
           I  GA + +  +   TPLH AS   +  ++V  L+E GANVNA      TP+H A+ +  
Sbjct: 328 IMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNN 387

Query: 235 VLIIDLLLGAGAQPNATTNHGQTALNIA 262
           V+II+ LL  GA   A +    TAL+ A
Sbjct: 388 VVIINTLLDYGADIEALSQKIGTALHFA 415

Length = 682

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 78.7 bits (193), Expect = 4e-17
 Identities = 51/211 (24%), Positives = 92/211 (43%), Gaps = 15/211 (7%)

Query: 26  EDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLE------- 78
           +   + L +  +   D ++  LL   +          +    +     A  L        
Sbjct: 2   KPSLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLI 61

Query: 79  NDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGK--- 135
            D     +      PLH AA  G+  I +LL+   A+VN +     TPLH+A   G    
Sbjct: 62  VDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPE 121

Query: 136 --VAMVELLISKGANIEAKTR---DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGF 190
             + + +LL+  GA+++       DG TPLH AA +G  +++++L+E GA   S+   G 
Sbjct: 122 GNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGV 181

Query: 191 TPLHIASHFGQLNMVRYLVENGANVNATTNL 221
           T L  A+  G++ +V+ L++ G +++     
Sbjct: 182 TALDPAAKNGRIELVKLLLDKGLHLSLLKFN 212

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 77.9 bits (191), Expect = 8e-17
 Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 8/171 (4%)

Query: 20  NQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLEN 79
           ++ L        L  A        + V      +       LH AA K D K   LLL +
Sbjct: 36  DKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLAS 95

Query: 80  DHSPDVKSNSHFTPLHIAAHYGNTN-----IAELLIQKHANVNN---QAKHNITPLHVAC 131
               + K     TPLH+AA  GN       +A+LL++  A+++    + +   TPLH A 
Sbjct: 96  GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAA 155

Query: 132 KWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAAL 182
             G   +VELL+  GA+  ++   G+T L  AA++G   ++ +L++KG  L
Sbjct: 156 LNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHL 206

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 73.4 bits (181), Expect = 1e-16
 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 193 LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATT 252
           LH+A+  G L +V+ L+E GA+VN       T LH A++ G + I+ LLL  GA  NA  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 253 NHGQTALNIAQKLGYISVIETL 274
             G TAL++A + G + +++ L
Sbjct: 59  KDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 79.3 bits (195), Expect = 2e-16
 Identities = 86/311 (27%), Positives = 135/311 (43%), Gaps = 40/311 (12%)

Query: 2   AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK-GKVKLPA 60
           AA+  +  +V  LLS G +  +   D  + L  A+   +   +  +++N +   K  L  
Sbjct: 185 AAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSL 244

Query: 61  LHIAAKKD------------------DCKAAAL---------------LLENDHSPDVKS 87
           L     +D                  DCK   L               LLE     + K+
Sbjct: 245 LKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKN 304

Query: 88  NSHFTPLHIAAHYG-NTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVA-MVELLISK 145
               TPL++ A  G +T     LI   A+VN   +  ITPLH A    +   +V  L+  
Sbjct: 305 IKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLEL 364

Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNM- 204
           GAN+ A+     TP+H AA   +  +I+ L++ GA + + ++   T LH A       M 
Sbjct: 365 GANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMS 424

Query: 205 VRYLVENGANVNATTNLGYTPLHQASQQG-RVLIIDLLLGAGAQPNATTNHGQTALNIAQ 263
           V+ L++ GANVN+      TPLH A ++  ++ +I++LL  GA  NA     Q  L IA 
Sbjct: 425 VKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIA- 483

Query: 264 KLGYISVIETL 274
            L Y  ++  L
Sbjct: 484 -LEYHGIVNIL 493

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 78.2 bits (192), Expect = 5e-16
 Identities = 68/241 (28%), Positives = 106/241 (43%), Gaps = 32/241 (13%)

Query: 66  KKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNIT 125
           ++D+   A +LLE     + K     TP+H AA  GN  +  LL+   A+VN  A  +++
Sbjct: 154 QQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLS 213

Query: 126 PLHVACKWGKVAMVELLISKGANIEAKTRDGL---------------------------- 157
            L  A     +  ++ +I   +NI       L                            
Sbjct: 214 VLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCK 273

Query: 158 -TPLHCAARSGH-DNVIDILIEKGAALYSKTKAGFTPLHIASHFG-QLNMVRYLVENGAN 214
            TPLH A+++     ++  L+E+GA + +K   G TPL++ +  G     +R L+  GA+
Sbjct: 274 NTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD 333

Query: 215 VNATTNLGYTPLHQASQQGRVL-IIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIET 273
           VNA   L  TPLHQAS   R   I+  LL  GA  NA     +T ++ A     + +I T
Sbjct: 334 VNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINT 393

Query: 274 L 274
           L
Sbjct: 394 L 394

Length = 682

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 68.8 bits (169), Expect = 6e-15
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 32  LAVAMQQGHDRVVAVLLEN--DTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNS 89
           L +A + G+  +V +LLE   D        ALH+AA+  + +   LLLE+    + K   
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKD 60

Query: 90  HFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
             T LH+AA  GN  I +LL++  A++N +
Sbjct: 61  GNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 74.3 bits (182), Expect = 6e-15
 Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 7/182 (3%)

Query: 97  AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
           A  +G  +IA  L+    N N +    I+P+ +A K+     ++LL+  GA  + K  D 
Sbjct: 9   AILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDI 68

Query: 157 LTPLHCAARSGHDNVIDILIEKGA----ALYSKTKAGFTPLHIASHFGQLNMVRYLVENG 212
            + LH A   G    ++ L++ G       Y   K G TPLH+A+   +L++++ L+  G
Sbjct: 69  ESELHDAVEEGDVKAVEELLDLGKFADDVFY---KDGMTPLHLATILKKLDIMKLLIARG 125

Query: 213 ANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIE 272
           A+ +      ++PLH A   G +  I+LL+   A  +     G T L IA   G I++ +
Sbjct: 126 ADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICK 185

Query: 273 TL 274
            L
Sbjct: 186 ML 187

Length = 413

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 72.2 bits (177), Expect = 4e-14
 Identities = 59/221 (26%), Positives = 95/221 (42%), Gaps = 34/221 (15%)

Query: 91  FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKW-GKVAMVELLISKG--- 146
           F PLH A    N ++ + L+ +  NVN     ++TPLH+ CK   K+ M E++ S     
Sbjct: 38  FIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCS 97

Query: 147 -ANIEAKTRDG------------LTPLHCAARS---------GHDNVID-----ILIEKG 179
                   +D             LT  +   ++           D++I+     +L+  G
Sbjct: 98  VFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYG 157

Query: 180 AALYSKTK-AGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII 238
           A +  K +  G T LH A+      +   L+  GANVN       +PLH A +     I+
Sbjct: 158 ADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIV 217

Query: 239 DLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTE 279
            +LL  GA  +A    G T L+I+  +GY    + LK++ E
Sbjct: 218 HILLENGASTDARDKCGNTPLHIS--VGYCKDYDILKLLLE 256

Length = 477

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 69.1 bits (169), Expect = 6e-14
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 17/147 (11%)

Query: 92  TPLH--IAAHYGNTNIAELLIQKHANVNNQAKH-NITPLHVACKWGK---VAMVELLISK 145
           TP+   +     N  I + LI+  A+VN + +  N++ LH    + K     ++++LI  
Sbjct: 53  TPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDS 112

Query: 146 GANIEAKTRDGLTPLH-----CAARSGHDNVIDILIEKGAALYSKTKAGFTPLH--IASH 198
           G++I  +  DG   LH        R    NVI +LI+ G +  +K       L+  I  H
Sbjct: 113 GSSITEEDEDGKNLLHMYMCNFNVRI---NVIKLLIDSGVSFLNKDFDNNNILYSYILFH 169

Query: 199 FGQLNMVRYLVENGANVNATTNLGYTP 225
             +  +  +L   G ++N T   GY  
Sbjct: 170 SDK-KIFDFLTSLGIDINETNKSGYNC 195

Length = 209

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 69.1 bits (169), Expect = 4e-13
 Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 12/137 (8%)

Query: 103 TNIAELLIQKHANVNNQAKHNITPL-----HVACKWGKVAMVELLISKGANIEAKTRDGL 157
           T+I +L I   ANVN       TPL     ++      + +V++LI  GA+I  K  DG 
Sbjct: 51  TDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGE 110

Query: 158 TPLHCAARSGHDNVIDIL---IEKGAALYSKTKAGFTPLHI---ASHFGQLNMVRYLVEN 211
           TPL+C   +G+ N ++IL   IE GA      K GFT L +   ++H   + +++ L+E 
Sbjct: 111 TPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEK 170

Query: 212 GANVNATTN-LGYTPLH 227
           G ++N   N   Y  LH
Sbjct: 171 GVDINTHNNKEKYDTLH 187

Length = 489

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 68.6 bits (167), Expect = 9e-13
 Identities = 71/227 (31%), Positives = 108/227 (47%), Gaps = 11/227 (4%)

Query: 30  TPLAVAMQQGH-DRVVAVLLE-----NDTKGKVKLPALHIAAKKDDCKAAALLLENDHSP 83
           TPL  A Q     R+V  LLE     N    K + P   +A    D +    L+      
Sbjct: 275 TPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADV 334

Query: 84  DVKSNSHFTPLHIAAHYG-NTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELL 142
           +     + TPLH A+    N +I   L++  ANVN +   + TP+H A     V ++  L
Sbjct: 335 NAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTL 394

Query: 143 ISKGANIEAKTRDGLTPLHCAARSGHDNV-IDILIEKGAALYSKTKAGFTPLHIASHFG- 200
           +  GA+IEA ++   T LH A    +  + +  LI++GA + SK K   TPLH A     
Sbjct: 395 LDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNC 454

Query: 201 QLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ 247
           +L+++  L++NGA+VNA       PL  A       I+++LL  GA+
Sbjct: 455 KLDVIEMLLDNGADVNAINIQNQYPLLIA--LEYHGIVNILLHYGAE 499

Length = 682

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 23/152 (15%)

Query: 6   NHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHD--RVVAVLLEN----DTKGKVKLP 59
           N   +V YLL  G N  +   DG   L + ++      +++ +L++     + K +V   
Sbjct: 119 NSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNY- 177

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
                           LL      ++K    FTPLH A +  N    + L+   AN N  
Sbjct: 178 ----------------LLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLV 221

Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEA 151
            K+  TPLH+A       + +LL++ G +I+ 
Sbjct: 222 NKYGDTPLHIAILNNNKEIFKLLLNNGPSIKT 253

Length = 422

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 65.9 bits (161), Expect = 7e-12
 Identities = 54/273 (19%), Positives = 87/273 (31%), Gaps = 82/273 (30%)

Query: 28  GFTPLAVAMQQG-HDRVVAVLLENDTKGKVKLPALHIAAK--KDDCKAAALLLENDHSPD 84
           G + L VA  +  +  +  +LL    +G V    LH  +    D  +A  L L       
Sbjct: 52  GRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKS 111

Query: 85  V-------KSNSHF----TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKW 133
                   +  S F    T LH+AAH  N  I +LL+++ A+V                 
Sbjct: 112 GPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASV-----------PARAC- 159

Query: 134 GKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPL 193
                   + S+G +                                           PL
Sbjct: 160 ----GDFFVKSQGVD-------------SFYHGES-----------------------PL 179

Query: 194 HIASHFGQLNMVRYLVENGANVNATTNLGYTPLH------QASQQGRVLII---DLLLGA 244
           + A+  G  ++V  L E+ A++    +LG T LH      +   +   L     +  L  
Sbjct: 180 NAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSL 239

Query: 245 GAQPNAT------TNH-GQTALNIAQKLGYISV 270
             +   +       NH G T L +A K G I +
Sbjct: 240 LDKLRDSKELEVILNHQGLTPLKLAAKEGRIVL 272

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 65.3 bits (159), Expect = 8e-12
 Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 11/158 (6%)

Query: 60  ALHIAAKKDDCKAAALLL---ENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
           ALH A +  D +   LLL    N + PD  +NS   PLH A  + N  I  +L++  A+ 
Sbjct: 171 ALHYATENKDQRLTELLLSYGANVNIPDKTNNS---PLHHAVKHYNKPIVHILLENGAST 227

Query: 117 NNQAKHNITPLHVACKWGK-VAMVELLISKGANIEAK-TRDGLTPLHCAARSGHDNVIDI 174
           + + K   TPLH++  + K   +++LL+  G ++ AK    GLT LH + +S  +  + +
Sbjct: 228 DARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKS--ERKLKL 285

Query: 175 LIEKGAALYSKTKAGFTPLHIA-SHFGQLNMVRYLVEN 211
           L+E GA + S      TPL  A   +  +N+ R L+ N
Sbjct: 286 LLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISN 323

Length = 477

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 62.3 bits (152), Expect = 7e-11
 Identities = 62/273 (22%), Positives = 92/273 (33%), Gaps = 64/273 (23%)

Query: 7   HDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAK 66
           +  V+R LL KG +       G TPL            AVLL++     V+L  L I A 
Sbjct: 131 NPKVIRLLLRKGADVNALDLYGMTPL------------AVLLKS-RNANVELLRLLIDAG 177

Query: 67  KDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITP 126
            D                   +   + LH                               
Sbjct: 178 ADVYA--------------VDDRFRSLLHHHLQSFKPR---------------------- 201

Query: 127 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAAR--SGHDNVIDILIEKGAALYS 184
              A        V  LI  G +  A    G TPLH  A   S   +++  L+  G ++ +
Sbjct: 202 ---ARI------VRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINA 252

Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 244
           + + G TPLH A+ F      R L+  GA++NA ++ G TPL    +      +   L  
Sbjct: 253 RNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAAL-- 310

Query: 245 GAQPNATTNHGQTALNIAQKLGYISVIETLKIV 277
              P+A T      LN A   G     +  ++ 
Sbjct: 311 AKNPSAETVAA--TLNTASVAGGDIPSDATRLC 341

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 61.9 bits (150), Expect = 9e-11
 Identities = 57/198 (28%), Positives = 83/198 (41%), Gaps = 24/198 (12%)

Query: 101 GNTNIAELLIQKHAN-VNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTP 159
           G+    E +I+   N +N       TPL  A + G   +VEL I  GA+I         P
Sbjct: 12  GDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHP 71

Query: 160 LHCAARSGHDNVIDILI-----------------------EKGAALYSKTKAGFTPLHIA 196
           L  A + G  ++I +LI                       + G  +  K     T LH A
Sbjct: 72  LLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYA 131

Query: 197 SHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQ 256
              G L  ++ L E GA+VN   + G  P+H A +     II LLL  GA  N   N+G+
Sbjct: 132 IKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGE 191

Query: 257 TALNIAQKLGYISVIETL 274
           + L+ A + G  + I+ L
Sbjct: 192 SPLHNAAEYGDYACIKLL 209

Length = 434

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 13/131 (9%)

Query: 135 KVAMVELLISKGANIEAKTRDGLTPLHCAARSGHD------NVIDILIEKGAALYSKTKA 188
              +V+L I+ GAN+     +  TPL C   S         +++ ILIE GA +  K   
Sbjct: 50  STDIVKLFINLGANVNGLDNEYSTPL-CTILSNIKDYKHMLDIVKILIENGADINKKNSD 108

Query: 189 GFTPLHIASHFGQLN---MVRYLVENGANVNATTNLGYTPLH---QASQQGRVLIIDLLL 242
           G TPL+     G +N   ++ +++ENGA+       G+T L    Q++    + II LLL
Sbjct: 109 GETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLL 168

Query: 243 GAGAQPNATTN 253
             G   N   N
Sbjct: 169 EKGVDINTHNN 179

Length = 489

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 56.1 bits (136), Expect = 1e-10
 Identities = 20/52 (38%), Positives = 31/52 (59%)

Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
           T LH A   G++ +V+ L+ KG +I     DG T LH AA +G+  V+ +L+
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 55.7 bits (135), Expect = 1e-10
 Identities = 21/54 (38%), Positives = 31/54 (57%)

Query: 156 GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLV 209
           G T LH AA SG   ++  L+EKG  +    + G T LHIA+  G L +++ L+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 52.6 bits (127), Expect = 1e-09
 Identities = 23/54 (42%), Positives = 35/54 (64%)

Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 242
           G T LH A+  G+L +V+YL+E G ++N T   G T LH A++ G + ++ LLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 53.2 bits (128), Expect = 5e-09
 Identities = 24/59 (40%), Positives = 36/59 (61%)

Query: 216 NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           NA    G TPLH A+  G + ++ LLL  GA  NA  N G+T L++A K G++ +++ L
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLL 59

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 7/107 (6%)

Query: 175 LIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR 234
           +I +        K    PL++A     +++V+ L++NGA++N++T    TPLH  S    
Sbjct: 21  IIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKY 80

Query: 235 VL-----IIDLLLGAGAQPNATTNHGQTALNIA--QKLGYISVIETL 274
            L     I+ LLL  GA  NA  N+G T L  A  +K    S++E L
Sbjct: 81  NLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYL 127

Length = 422

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 59/236 (25%), Positives = 104/236 (44%), Gaps = 16/236 (6%)

Query: 11  VRYLLSKGGNQTLATEDGFTPL--AVAMQQGHDRVVAVL---LENDTKGKVKLPALHIAA 65
           +R L+  G +   A     TPL  A  + +  D V+ +L      + +       +H AA
Sbjct: 324 IRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAA 383

Query: 66  KKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIA-ELLIQKHANVNNQAKHNI 124
            +++      LL+     +  S    T LH A    N  ++ + LI + ANVN++ K   
Sbjct: 384 VRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLS 443

Query: 125 TPLHVACKWG-KVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 183
           TPLH ACK   K+ ++E+L+  GA++ A       PL  A    +  +++IL+  GA L 
Sbjct: 444 TPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIAL--EYHGIVNILLHYGAELR 501

Query: 184 -------SKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQ 232
                  S     F+  +I +H    + +R+ + N  N        +T L ++ ++
Sbjct: 502 DSRVLHKSLNDNMFSFRYIIAHICIQDFIRHDIRNEVNPLKRVPTRFTSLRESFKE 557

Length = 682

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 49.2 bits (118), Expect = 2e-08
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 90  HFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI 143
             T LH AA  G   + + L++K  ++N   +   T LH+A + G + +++LL+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 175 LIEKGAALY-SKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQA 229
           L+E G     +    G TPLH+A+ +G L +V++L++ G ++N   + G T L  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 208 LVENG-ANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
           L+E+G  ++NAT   G TPLH A++ G + ++  LL  G   N   + G TAL++A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 1/132 (0%)

Query: 44  VAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNT 103
           +A + E   +    L AL     KD      L  E    P V          +AA  G+ 
Sbjct: 37  MAAIQEEIARIDTHLEALEATENKDATPDHNLTTEEVIDPVVAHMLTVELCQLAAS-GDA 95

Query: 104 NIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCA 163
             A +L+   A+ N +     TPLH+AC  G V +V +L+  GA+     +DG TPL  A
Sbjct: 96  VGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELA 155

Query: 164 ARSGHDNVIDIL 175
             +G   V+ +L
Sbjct: 156 EENGFREVVQLL 167

Length = 664

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 16/149 (10%)

Query: 51  DTKGKVKLPALHIAAKK--DDCKAAALLLE---NDHSPDVKSNSHFTPLHIAAHYGNTNI 105
           D+KG+     LHIAA K  +DC    +LL+   N H  D   N+       A H+    I
Sbjct: 555 DSKGRT---PLHIAASKGYEDC--VLVLLKHACNVHIRDANGNTALWNAISAKHH---KI 606

Query: 106 AELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAAR 165
             +L    +  +  A  ++  L  A K   +  ++ L+ +G N++++   G T L  A  
Sbjct: 607 FRILYHFASISDPHAAGDL--LCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMA 664

Query: 166 SGHDNVIDILIEKGAAL-YSKTKAGFTPL 193
             H +++ +LI  GA +  + T   F+P 
Sbjct: 665 EDHVDMVRLLIMNGADVDKANTDDDFSPT 693

Length = 823

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 52.9 bits (126), Expect = 4e-08
 Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 27/150 (18%)

Query: 2   AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
           AA +  D +V+ LL+ G +      DG TPL +A   G+                     
Sbjct: 80  AASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNP-------------------- 119

Query: 62  HIAAKKDDCKAAALLLEN---DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
                + + + A LLLE        +++     TPLH AA  G+ +I ELL++  A+ N+
Sbjct: 120 ----PEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNS 175

Query: 119 QAKHNITPLHVACKWGKVAMVELLISKGAN 148
           +  + +T L  A K G++ +V+LL+ KG +
Sbjct: 176 RNSYGVTALDPAAKNGRIELVKLLLDKGLH 205

Length = 235

>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 59/234 (25%), Positives = 90/234 (38%), Gaps = 59/234 (25%)

Query: 100 YGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVA--MVELLISKGANIEAKTRDGL 157
           Y + +I E L     NVN Q  H ITPLH     G V   +++ +I  G +++ K  +G+
Sbjct: 189 YVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGM 248

Query: 158 TP----------------------------------LHC---AARSGHDNVIDILIEKGA 180
           +P                                  LH     AR+   +V+   ++ G 
Sbjct: 249 SPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGV 308

Query: 181 ALYSKTKAGFTPLH--IASHFGQLNMVRYLVENGANVNATTNLGYTPLH----------- 227
            L+ K  AG T LH  I  H    ++++ L E G ++N   N+G T LH           
Sbjct: 309 KLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNI 368

Query: 228 ---QASQQGRVLIIDLLLGAGAQPNATTNHGQTALN----IAQKLGYISVIETL 274
              +     R+ +I  L+  GA   A    G T L      AQ   Y  +I+ L
Sbjct: 369 LDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCL 422

Length = 764

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 47.9 bits (115), Expect = 4e-08
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTN 220
           G TPLH+A+  G L +V+ L+E GA+VNA   
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 53.7 bits (129), Expect = 5e-08
 Identities = 51/240 (21%), Positives = 90/240 (37%), Gaps = 55/240 (22%)

Query: 75  LLLENDHSPDVKSNSHFTPL-----HIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHV 129
           L +    + +   N + TPL     +I  +    +I ++LI+  A++N +     TPL+ 
Sbjct: 56  LFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYC 115

Query: 130 ACKWGKVAMVELL---ISKGANIEAKTRDGLTPLHCAARSGHD---NVIDILIEKGAALY 183
               G +  +E+L   I  GA+     +DG T L    +S H     +I +L+EKG  + 
Sbjct: 116 LLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDIN 175

Query: 184 S-KTKAGFTPLH--IASHFGQLNM--VRYLVENG-------------------------- 212
           +   K  +  LH     +  +++   ++  V+NG                          
Sbjct: 176 THNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNK 235

Query: 213 -------------ANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTAL 259
                         ++N    LG+ PL+ +       I + LL  G   N  T  G T L
Sbjct: 236 RFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCL 295

Length = 489

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 53.7 bits (129), Expect = 5e-08
 Identities = 29/80 (36%), Positives = 38/80 (47%)

Query: 164 ARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGY 223
           A SG      IL+  GA    +   G TPLHIA   G + +VR L+E GA+       G 
Sbjct: 90  AASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGK 149

Query: 224 TPLHQASQQGRVLIIDLLLG 243
           TPL  A + G   ++ LL  
Sbjct: 150 TPLELAEENGFREVVQLLSR 169

Length = 664

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 19/56 (33%), Positives = 31/56 (55%)

Query: 108 LLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCA 163
           LL     ++N    +  TPLH+A K+G + +V+ L+  G ++  +  DGLT L  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 18/53 (33%), Positives = 23/53 (43%)

Query: 58  LPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLI 110
             ALH AA     +    LLE     +       T LHIAA  GN  + +LL+
Sbjct: 2   RTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 76  LLENDH-SPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVA 130
           LLE+     +    +  TPLH+AA YG   + + L++   ++N +    +T L +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional

 Score = 50.8 bits (121), Expect = 3e-07
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 88  NSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKH-NITPLHVACKWGKVAMVELLISKG 146
           NS   PL  A    N + A+LLI+  A+VN  A+   ITPL+++   G +  +E+L+S G
Sbjct: 68  NSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYG 127

Query: 147 ANIEAKTRDGLTPLHCAARSGHDNV 171
           A+I  +T D +TP+  A    ++ +
Sbjct: 128 ADINIQTNDMVTPIELALMICNNFL 152

Length = 300

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 45.0 bits (107), Expect = 8e-07
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 142 LISKG-ANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIA 196
           L+  G  ++ A   +G TPLH AA+ G   ++  L++ G  L  +   G T L +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 50.3 bits (120), Expect = 8e-07
 Identities = 25/70 (35%), Positives = 37/70 (52%)

Query: 205 VRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQK 264
            R L+  GA+ N     G TPLH A   G V ++ +LL  GA P      G+T L +A++
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEE 157

Query: 265 LGYISVIETL 274
            G+  V++ L
Sbjct: 158 NGFREVVQLL 167

Length = 664

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 49.9 bits (119), Expect = 9e-07
 Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 21/161 (13%)

Query: 76  LLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGK 135
           LL+    PD+  +   TPLHIAA  G  +   +L++   NV           H+    G 
Sbjct: 544 LLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-----------HIRDANGN 592

Query: 136 VAMVELLISKGANIE------AKTRDGLTP--LHC-AARSGHDNVIDILIEKGAALYSKT 186
            A+   + +K   I       A   D      L C AA+      +  L+++G  + S+ 
Sbjct: 593 TALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSED 652

Query: 187 KAGFTPLHIASHFGQLNMVRYLVENGANVN-ATTNLGYTPL 226
             G T L +A     ++MVR L+ NGA+V+ A T+  ++P 
Sbjct: 653 HQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPT 693

Length = 823

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 35/178 (19%)

Query: 3   AQENHD-GVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
           A EN D  +   LLS G N  +  +   +P                             L
Sbjct: 175 ATENKDQRLTELLLSYGANVNIPDKTNNSP-----------------------------L 205

Query: 62  HIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHY-GNTNIAELLIQKHANVNNQA 120
           H A K  +     +LLEN  S D +     TPLHI+  Y  + +I +LL++   +VN ++
Sbjct: 206 HHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS 265

Query: 121 K-HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHD-NVIDILI 176
               +T LH + K  +   ++LL+  GA+I +     LTPL  A +     N+  ILI
Sbjct: 266 YILGLTALHSSIKSERK--LKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILI 321

Length = 477

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 12/33 (36%), Positives = 22/33 (66%)

Query: 122 HNITPLHVACKWGKVAMVELLISKGANIEAKTR 154
              TPLH+A + G + +V+LL+  GA++ A+ +
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 8/174 (4%)

Query: 76  LLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGK 135
           LL   +SP+   +    PLHIA+   N  I  +L+   A+ N   K + TPL+       
Sbjct: 58  LLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDD 117

Query: 136 --VAMVELLISKGANIEAKT-RDGLTPLHCAARSGHDNVIDILIEKG--AALYSKTKAGF 190
             +  + LL+  GA I      +G  PL  A     + V   ++  G  A +  K     
Sbjct: 118 EVIERINLLVQYGAKINNSVDEEGCGPL-LACTDPSERVFKKIMSIGFEARIVDKFGKNH 176

Query: 191 TPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQ--GRVLIIDLLL 242
              H+ S   + + + ++++ G + +   + G TPLH    +    V II+LLL
Sbjct: 177 IHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLL 230

Length = 446

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 16/51 (31%), Positives = 29/51 (56%)

Query: 1  MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEND 51
          +AA+  +  +V+ LL  G +     +DG T L +A + G+  +V +LLE+ 
Sbjct: 34 LAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHG 84

Length = 91

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 42.5 bits (101), Expect = 4e-06
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 91  FTPLHIAAHYGNTNIAELLIQKHANVN 117
            TPLH+AA  G+  + +LL++  A+VN
Sbjct: 3   NTPLHLAARNGHLEVVKLLLEAGADVN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 41/178 (23%)

Query: 94  LHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVA------MVELLISKGA 147
           L++        I +LLI   A+VN +     TPL    +  ++       +V+LL+  GA
Sbjct: 41  LYLKRKDVKIKIVKLLIDNGADVNYKGYIE-TPLCAVLRNREITSNKIKKIVKLLLKFGA 99

Query: 148 NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRY 207
           +I  KT +G++P+ C                   +Y+            S+    +M+R+
Sbjct: 100 DINLKTFNGVSPIVC------------------FIYN------------SNINNCDMLRF 129

Query: 208 LVENGANVNATTNL-GYTPLHQ--ASQQGRVLIIDLLLGAGAQPNATTN-HGQTALNI 261
           L+  G NVN   N  GY  LH    S   +  +I +LL  G      T+ +G T +NI
Sbjct: 130 LLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNI 187

Length = 494

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 47.7 bits (113), Expect = 5e-06
 Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 32/166 (19%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           +A + N   +++ LL KG    +   +G +P                             
Sbjct: 163 IAIKHNFFDIIKLLLEKGAYANVKDNNGESP----------------------------- 193

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
           LH AA+  D     LL+++ +    K  + FTPLH A  + N +  ELLI  +A++N+Q 
Sbjct: 194 LHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIH-NRSAIELLIN-NASINDQD 251

Query: 121 KHNITPLHVACKWG-KVAMVELLISKGANIEAKTRDGLTPLHCAAR 165
               TPLH A      + ++++L+   A+I  K   G  P+  A +
Sbjct: 252 IDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFK 297

Length = 434

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 47/233 (20%), Positives = 101/233 (43%), Gaps = 26/233 (11%)

Query: 102 NTNIAELLIQ---KHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLT 158
           + N+ +LL     +H + N  +  N+  L VA   G  A++E L+    + +     G T
Sbjct: 506 DLNVGDLLGDNGGEHDDPNMAS--NL--LTVAST-GNAALLEELLKAKLDPDIGDSKGRT 560

Query: 159 PLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPL--HIASHFGQLNMVRYLVENGANVN 216
           PLH AA  G+++ + +L++    ++ +   G T L   I++   ++  + Y   + ++ +
Sbjct: 561 PLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPH 620

Query: 217 ATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL-- 274
           A  +L    L  A+++  +  +  LL  G   ++  + G TAL +A    ++ ++  L  
Sbjct: 621 AAGDL----LCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIM 676

Query: 275 ------KIVTETTIVTTTVTTIEEK----YRVVAPEAMQEVYMSDSEDEGGRK 317
                 K  T+     T +  + +K    + +   +++         D G R 
Sbjct: 677 NGADVDKANTDDDFSPTELRELLQKRELGHSITIVDSVPADEPDLGRDGGSRP 729

Length = 823

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 17/33 (51%), Positives = 24/33 (72%)

Query: 155 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 187
           DG TPLH AAR+GH  V+ +L+E GA + ++ K
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 21/53 (39%), Positives = 31/53 (58%)

Query: 222 GYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           G T LH+A+  GR+ ++  LL  G   N T   G TAL+IA + G + V++ L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 14/29 (48%), Positives = 22/29 (75%)

Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNA 217
           G TPLH+A+  G L +V+ L++ GA++NA
Sbjct: 2   GRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 40/181 (22%), Positives = 75/181 (41%), Gaps = 12/181 (6%)

Query: 75  LLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHN---ITPLHVAC 131
           LL +  +  DVK++  +  LH+     +     + I     VN   K +   +TP+++  
Sbjct: 130 LLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYL 189

Query: 132 KWG----KVAMVELLISKGANIEAKTRDGLTPLHCAARSG---HDNVIDIL--IEKGAAL 182
           +       + +++ LI KG NIE       + L     +          +L  I K   +
Sbjct: 190 RNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKI 249

Query: 183 YSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 242
             K K GF PL I++         YL++ G ++   +  G T L  A + G + +++ +L
Sbjct: 250 NKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRIL 309

Query: 243 G 243
            
Sbjct: 310 Q 310

Length = 494

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 43/191 (22%), Positives = 77/191 (40%), Gaps = 18/191 (9%)

Query: 6   NHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHD---RVVAVLLE-----NDTKGKVK 57
           N+  ++ +++  G + TL  +DGFT L V +Q  H     ++ +LLE     N    K K
Sbjct: 123 NNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEK 182

Query: 58  LPALHIAAKKD----DCKAAALLLENDHSPDVKSNSH---FTPLHIAAHYGNTNIAEL-- 108
              LH   K +    D     L ++N    + ++ SH   F     +  Y N    +   
Sbjct: 183 YDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNIL 242

Query: 109 -LIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSG 167
             I  + ++N   +    PL+ +       + E L+  G +I   T  G T L  A  + 
Sbjct: 243 DFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENE 302

Query: 168 HDNVIDILIEK 178
              + + ++ K
Sbjct: 303 SKFIFNSILNK 313

Length = 489

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 27/75 (36%), Positives = 39/75 (52%)

Query: 134 GKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPL 193
           G      +L++ GA+   +  DG TPLH A  +GH  V+ +L+E GA      K G TPL
Sbjct: 93  GDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPL 152

Query: 194 HIASHFGQLNMVRYL 208
            +A   G   +V+ L
Sbjct: 153 ELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.7 bits (91), Expect = 9e-05
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 222 GYTPLHQASQQGRVLIIDLLLGAGAQPNATTN 253
           G TPLH A++ G + ++ LLL AGA  NA   
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 15/29 (51%), Positives = 23/29 (79%)

Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNA 217
           G TPLH+A+  G L +V+ L+E+GA++NA
Sbjct: 2   GNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 122 HNITPLHVACKWGKVAMVELLISKGANIEA 151
              TPLH+A + G + +V+LL+ KGA+I A
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 22/49 (44%), Positives = 32/49 (65%)

Query: 188 AGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
            G T L+ A + G +++V +L+ENGANVNA  + GYT L  A  +G V+
Sbjct: 220 GGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVI 268

Length = 437

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 44/218 (20%), Positives = 82/218 (37%), Gaps = 50/218 (22%)

Query: 75  LLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELL---IQKHANVNNQAKHNITPLHVAC 131
           +L+EN    + K++   TPL+     G  N  E+L   I+  A+     K   T L V  
Sbjct: 94  ILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYL 153

Query: 132 KWG---KVAMVELLISKGANIEA-KTRDGLTPLHCAARSGHD----NVIDILIEKGAALY 183
           +      + +++LL+ KG +I     ++    LHC  +   D    +++ + ++ G  + 
Sbjct: 154 QSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIIN 213

Query: 184 SKTKA---------------------------------------GFTPLHIASHFGQLNM 204
            + K+                                       GF PL+ +       +
Sbjct: 214 KENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKI 273

Query: 205 VRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 242
             YL++ G ++N  T LG T L  A +     I + +L
Sbjct: 274 FEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSIL 311

Length = 489

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 91  FTPLHIAAHYGNTNIAELLIQKHANVN 117
            TPLH+AA  GN  + +LL+ K A++N
Sbjct: 3   RTPLHLAAENGNLEVVKLLLDKGADIN 29

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 14/26 (53%), Positives = 20/26 (76%)

Query: 155 DGLTPLHCAARSGHDNVIDILIEKGA 180
           DG TPLH AA +G+  V+ +L++KGA
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGA 26

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.8 bits (86), Expect = 3e-04
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 92  TPLHIAAHYGNTNIAELLIQKHANVN 117
           TPLH+AA  GN  + +LL++  A++N
Sbjct: 4   TPLHLAARNGNLELVKLLLEHGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 122 HNITPLHVACKWGKVAMVELLISKGANIEA 151
              TPLH+A + G + +V+LL+  GA+I A
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 14/133 (10%)

Query: 127 LHVACKWGKVAMVELLISKGANIEAK-------TRDGLTPLHCAARSGHDNVID---ILI 176
           LH  C+ G V   +LL  K A  +          R G   +H  +     +  +   +L+
Sbjct: 21  LHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLM 78

Query: 177 EKGAALYSK-TKAGFTPLHIASHFGQLNMVRYLVEN-GANVNATTNLGYTPLHQASQQGR 234
           E GA +  K    G TPLHIA +     +  +L    G N+        TP + A ++  
Sbjct: 79  EWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHD 138

Query: 235 VLIIDLLLGAGAQ 247
             ++++L   GAQ
Sbjct: 139 AKMMNILRAKGAQ 151

Length = 154

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.1 bits (84), Expect = 7e-04
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 155 DGLTPLHCAARSGHDNVIDILIEKGAALY 183
           DG TPLH AAR+G+  ++ +L+E GA + 
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 25/129 (19%), Positives = 54/129 (41%), Gaps = 9/129 (6%)

Query: 75  LLLENDHSPDVKS-NSHFTPLHIAAHYG---NTNIAELLIQKHANVNNQAKHNITPLHV- 129
            L+EN    + K+ +++ + LH    +       I ++LI   +++  + +     LH+ 
Sbjct: 71  FLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMY 130

Query: 130 ACKWG-KVAMVELLISKGANIEAKTRDGLTPLHC--AARSGHDNVIDILIEKGAALYSKT 186
            C +  ++ +++LLI  G +   K  D    L+      S    + D L   G  +    
Sbjct: 131 MCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHS-DKKIFDFLTSLGIDINETN 189

Query: 187 KAGFTPLHI 195
           K+G+    +
Sbjct: 190 KSGYNCYDL 198

Length = 209

>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 136 VAMVELLISKGANIEAKTRD-GLTPLHCAARSGHDNVIDILIEK-GAALYSKTKAGFTPL 193
           V  +ELL++ GA+I A+    G T LH AA + +  + + L  + G  L +      T  
Sbjct: 73  VMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAY 132

Query: 194 HIASHFGQLNMVRYLVENGANVNATTNLG 222
           HIA       M+  L  NGA  +   ++G
Sbjct: 133 HIAYKMRDRRMMEILRANGAVCDDPLSIG 161

Length = 166

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 62  HIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAK 121
            +AA  D    A +LL     P+ +     TPLHIA   G+  +  +L++  A+     K
Sbjct: 88  QLAASGDAV-GARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDK 146

Query: 122 HNITPLHVACKWGKVAMVELLIS 144
              TPL +A + G   +V+LL  
Sbjct: 147 DGKTPLELAEENGFREVVQLLSR 169

Length = 664

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 39/161 (24%), Positives = 62/161 (38%), Gaps = 32/161 (19%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           +AA + ++  V  LL    N  +   +G T L  A+   H ++  +L             
Sbjct: 564 IAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRIL------------- 610

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
            H A+  D   A  LL                    AA   +    + L+++  NV+++ 
Sbjct: 611 YHFASISDPHAAGDLLCT------------------AAKRNDLTAMKELLKQGLNVDSED 652

Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIE-AKTRDGLTPL 160
               T L VA     V MV LLI  GA+++ A T D  +P 
Sbjct: 653 HQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPT 693

Length = 823

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 38.9 bits (90), Expect = 0.003
 Identities = 21/56 (37%), Positives = 28/56 (50%)

Query: 204 MVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTAL 259
            V  L+  G + N T + G  PLH AS+     I+ +LL  GA PNA     +T L
Sbjct: 54  FVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPL 109

Length = 446

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 38.5 bits (89), Expect = 0.003
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 2/95 (2%)

Query: 161 HCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTN 220
           +C  +   +  ++ L+ +G +       G  PLHIAS      +V  L+ +GA+ NA   
Sbjct: 44  YCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDK 103

Query: 221 LGYTPLHQASQQGRVLI--IDLLLGAGAQPNATTN 253
              TPL+  S     +I  I+LL+  GA+ N + +
Sbjct: 104 QHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVD 138

Length = 446

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 36.8 bits (85), Expect = 0.004
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 92  TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNI--TPLHVACKWGKVAMVELLISKGA 147
           TPLHIA +  N  +A  L  +   VN +  +    TP +VAC+     M+ +L +KGA
Sbjct: 94  TPLHIAVYTQNYELATWLCNQ-PGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGA 150

Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	318
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
KOG0510|consensus	929		100.0
KOG0510|consensus	929		100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG4412|consensus	226		100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
KOG4177|consensus	1143		100.0
KOG0508|consensus	615		100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
KOG4412|consensus	226		100.0
KOG0508|consensus	615		100.0
KOG4177|consensus	1143		100.0
KOG0509|consensus	600		100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
KOG0509|consensus	600		100.0
PHA02859	209	ankyrin repeat protein; Provisional	100.0
PHA02795	437	ankyrin-like protein; Provisional	100.0
PHA02795	437	ankyrin-like protein; Provisional	99.98
PHA02859	209	ankyrin repeat protein; Provisional	99.97
KOG4369|consensus	2131		99.96
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.96
KOG0502|consensus	296		99.95
KOG0502|consensus	296		99.95
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.95
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.95
KOG0507|consensus	854		99.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
KOG0507|consensus	854		99.93
PHA02743	166	Viral ankyrin protein; Provisional	99.92
KOG0505|consensus	527		99.92
PHA02741	169	hypothetical protein; Provisional	99.9
KOG0505|consensus	527		99.9
PHA02743	166	Viral ankyrin protein; Provisional	99.9
KOG4369|consensus	2131		99.9
KOG0514|consensus	452		99.89
PHA02741	169	hypothetical protein; Provisional	99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.88
KOG0514|consensus	452		99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.88
PHA02736	154	Viral ankyrin protein; Provisional	99.87
PHA02736	154	Viral ankyrin protein; Provisional	99.86
KOG0512|consensus	228		99.85
KOG3676|consensus	782		99.84
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.82
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.81
KOG0512|consensus	228		99.81
KOG0195|consensus	448		99.78
KOG3676|consensus	782		99.78
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.78
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.77
KOG0195|consensus	448		99.75
KOG4214|consensus	117		99.72
KOG4214|consensus	117		99.65
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.62
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.59
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.56
KOG1710|consensus	396		99.56
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.55
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.55
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.52
KOG0515|consensus	752		99.5
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.47
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.43
KOG0515|consensus	752		99.41
KOG1710|consensus	396		99.35
KOG0783|consensus	1267		99.07
KOG0818|consensus	669		99.05
KOG0506|consensus	622		99.05
KOG0782|consensus	1004		99.02
PF13606	30	Ank_3: Ankyrin repeat	98.98
KOG0783|consensus	1267		98.91
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.89
PF13606	30	Ank_3: Ankyrin repeat	98.84
KOG0782|consensus	1004		98.81
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.74
KOG0818|consensus	669		98.72
KOG0506|consensus	622		98.71
KOG0522|consensus	560		98.69
KOG0705|consensus	749		98.64
KOG3609|consensus	822		98.58
KOG2384|consensus	223		98.54
KOG3609|consensus	822		98.53
KOG0705|consensus	749		98.52
KOG2384|consensus	223		98.49
KOG0521|consensus	785		98.44
KOG0522|consensus	560		98.44
KOG0511|consensus	516		98.42
KOG0521|consensus	785		98.22
KOG0511|consensus	516		98.13
KOG0520|consensus	975		98.09
KOG0520|consensus	975		97.83
KOG2505|consensus	591		97.81
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.65
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.51
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.28
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.89
KOG2505|consensus	591		96.79
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	96.71
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.58
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.03
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.78
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	89.07
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	88.29
PLN03218	1060	maturation of RBCL 1; Provisional	86.13
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	84.39
PLN03218	1060	maturation of RBCL 1; Provisional	82.7
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	82.34

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=5e-47  Score=331.11  Aligned_cols=281  Identities=26%  Similarity=0.318  Sum_probs=263.4

Q ss_pred             CccccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcC---CHHHHHHHHhcCCC----CCCChhHHHHHHhCC-CHHH
Q psy4998           1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQG---HDRVVAVLLENDTK----GKVKLPALHIAAKKD-DCKA   72 (318)
Q Consensus         1 lA~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g---~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~-~~~~   72 (318)
                      +|+..++.++|++|+++|++++..+..|.||||+|+..|   +.+++++|++.|++    +..|.||||+|+..| +.++
T Consensus        20 ~~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~i   99 (471)
T PHA03095         20 LNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDV   99 (471)
T ss_pred             HcCCCCCHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHH
Confidence            367889999999999999999999999999999999999   99999999998765    457899999999999 5999


Q ss_pred             HHHHHhCCCCCCCCCCCCchHHHHHH--HcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcC--cHHHHHHHHHcCCC
Q psy4998          73 AALLLENDHSPDVKSNSHFTPLHIAA--HYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWG--KVAMVELLISKGAN  148 (318)
Q Consensus        73 ~~~ll~~~~~~~~~~~~~~~~l~~a~--~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~L~~~~~~  148 (318)
                      +++|+++|++++..+..|.||||+|+  ..++.+++++|++.|++++..+..|.||||.|+..+  +.+++++|++.|.+
T Consensus       100 v~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~  179 (471)
T PHA03095        100 IKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGAD  179 (471)
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC
Confidence            99999999999999999999999999  556889999999999999999999999999998866  68999999999999


Q ss_pred             CCccCCCCChHHHHHHHc--CCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCH--HHHHHHHHcCCCCCcCCCCCCC
Q psy4998         149 IEAKTRDGLTPLHCAARS--GHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQL--NMVRYLVENGANVNATTNLGYT  224 (318)
Q Consensus       149 ~~~~~~~~~~~l~~a~~~--~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~--~~~~~Ll~~g~~~~~~~~~g~t  224 (318)
                      ++..+..|.|+||.++..  +..++++.|++.|++++.++..|.||||+|+..++.  .+++.|++.|++++.++..|.|
T Consensus       180 ~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~T  259 (471)
T PHA03095        180 VYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQT  259 (471)
T ss_pred             CcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCC
Confidence            998899999999999875  678999999999999999999999999999998874  6888999999999999999999


Q ss_pred             HHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccc
Q psy4998         225 PLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETT  281 (318)
Q Consensus       225 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  281 (318)
                      |||+|+..|+.+++++|+++|++++..|..|.||+++|+..|+.+++++|.......
T Consensus       260 pLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~  316 (471)
T PHA03095        260 PLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSA  316 (471)
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCH
Confidence            999999999999999999999999999999999999999999999999998876553

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.7e-46  Score=320.93  Aligned_cols=276  Identities=27%  Similarity=0.389  Sum_probs=252.0

Q ss_pred             CccccChHHHHHHHHhcC-CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHH
Q psy4998           1 MAAQENHDGVVRYLLSKG-GNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAAL   75 (318)
Q Consensus         1 lA~~~g~~~~v~~Ll~~g-~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~   75 (318)
                      +|+..|++++|++|++.+ ..++..+..|.||||.|+..|+.+++++|++.|+.    +..+.+||+.|+..|+.+++++
T Consensus         7 ~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~   86 (434)
T PHA02874          7 MCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKL   86 (434)
T ss_pred             HHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            488999999999999864 45778888999999999999999999999998765    4457899999999999999999


Q ss_pred             HHhCCCC-----------------------CCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHH
Q psy4998          76 LLENDHS-----------------------PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACK  132 (318)
Q Consensus        76 ll~~~~~-----------------------~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~  132 (318)
                      |+++|.+                       ++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+.
T Consensus        87 Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~  166 (434)
T PHA02874         87 LIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIK  166 (434)
T ss_pred             HHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHH
Confidence            9987654                       55677889999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcC
Q psy4998         133 WGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENG  212 (318)
Q Consensus       133 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g  212 (318)
                      .++.+++++|++.|.+++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||.|+..+. +.+.+|+ .|
T Consensus       167 ~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~  244 (434)
T PHA02874        167 HNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NN  244 (434)
T ss_pred             CCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cC
Confidence            999999999999999999999999999999999999999999999999999999999999999998765 5667666 68


Q ss_pred             CCCCcCCCCCCCHHHHHHHcC-CHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHhhhcc
Q psy4998         213 ANVNATTNLGYTPLHQASQQG-RVLIIDLLLGAGAQPNATTNHGQTALNIAQKLG-YISVIETLKIVT  278 (318)
Q Consensus       213 ~~~~~~~~~g~t~l~~A~~~~-~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~~~~~l~~~~  278 (318)
                      ++++.++..|.||||+|+..+ +.+++++|+++|++++.+|..|.||+++|++++ ..++++.|....
T Consensus       245 ~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~  312 (434)
T PHA02874        245 ASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIANA  312 (434)
T ss_pred             CCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhc
Confidence            999999999999999999876 789999999999999999999999999999987 667777777654

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5e-46  Score=325.42  Aligned_cols=276  Identities=30%  Similarity=0.412  Sum_probs=263.1

Q ss_pred             cChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHH-----HHhCCCHHHHHH
Q psy4998           5 ENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHI-----AAKKDDCKAAAL   75 (318)
Q Consensus         5 ~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~-----A~~~~~~~~~~~   75 (318)
                      ....++++++++.+...+..+..+.||||.|+..|+.+++++|++.|..    ...+.+|||.     |+..++.+++++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~   91 (480)
T PHA03100         12 IIKVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKL   91 (480)
T ss_pred             HHHHHHHHHHHhcCccchhhhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHH
Confidence            3456889999998887778888999999999999999999999999765    4456799999     999999999999


Q ss_pred             HHhCCCCCCCCCCCCchHHHHHH--HcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcC--cHHHHHHHHHcCCCCCc
Q psy4998          76 LLENDHSPDVKSNSHFTPLHIAA--HYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWG--KVAMVELLISKGANIEA  151 (318)
Q Consensus        76 ll~~~~~~~~~~~~~~~~l~~a~--~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~L~~~~~~~~~  151 (318)
                      |+++|++++..+..|.||||+|+  ..|+.+++++|++.|++++..+..|.||||.|+..+  +.+++++|++.|++++.
T Consensus        92 Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~  171 (480)
T PHA03100         92 LLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINA  171 (480)
T ss_pred             HHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCccc
Confidence            99999999999999999999999  999999999999999999999999999999999999  99999999999999999


Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCC------CcHhHHHhhcCC--HHHHHHHHHcCCCCCcCCCCCC
Q psy4998         152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG------FTPLHIASHFGQ--LNMVRYLVENGANVNATTNLGY  223 (318)
Q Consensus       152 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~------~t~l~~a~~~~~--~~~~~~Ll~~g~~~~~~~~~g~  223 (318)
                      .+..|.||||+|+..|+.+++++|+++|++++..+..|      .||+|.|+..++  .+++++|+++|++++.++..|.
T Consensus       172 ~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~  251 (480)
T PHA03100        172 KNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGF  251 (480)
T ss_pred             ccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCC
Confidence            99999999999999999999999999999999988888      899999999999  9999999999999999999999


Q ss_pred             CHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcccc
Q psy4998         224 TPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTET  280 (318)
Q Consensus       224 t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  280 (318)
                      ||||+|+..|+.+++++|+++|+|++..|..|.||+++|+..++.+++++|...+.+
T Consensus       252 TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~  308 (480)
T PHA03100        252 TPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPS  308 (480)
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999999999999999988775

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.2e-45  Score=324.50  Aligned_cols=278  Identities=18%  Similarity=0.216  Sum_probs=243.8

Q ss_pred             cccChHHHHHHHHhcC-CCCCcC-CCCCCCHHHHHHH--cCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCC--HHH
Q psy4998           3 AQENHDGVVRYLLSKG-GNQTLA-TEDGFTPLAVAMQ--QGHDRVVAVLLENDTK----GKVKLPALHIAAKKDD--CKA   72 (318)
Q Consensus         3 ~~~g~~~~v~~Ll~~g-~~~~~~-~~~~~t~l~~A~~--~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~--~~~   72 (318)
                      .+.++.++|++|+++| ++++.. +..|.||||.|+.  +++.+++++|++.|++    +..|.||||+|+..|+  .++
T Consensus       150 ~~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eI  229 (764)
T PHA02716        150 TRGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASV  229 (764)
T ss_pred             ccCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHH
Confidence            4568999999999999 999998 8999999999875  4679999999998765    5678999999999995  599


Q ss_pred             HHHHHhCCCCCCCCCCCCchHHHHH-------------------------------------HHcCCHHHHHHHHhccCC
Q psy4998          73 AALLLENDHSPDVKSNSHFTPLHIA-------------------------------------AHYGNTNIAELLIQKHAN  115 (318)
Q Consensus        73 ~~~ll~~~~~~~~~~~~~~~~l~~a-------------------------------------~~~~~~~~~~~ll~~~~~  115 (318)
                      ++.|+++|++++.++..|.||||+|                                     +..|+.+++++|++.|++
T Consensus       230 VklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd  309 (764)
T PHA02716        230 IKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVK  309 (764)
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc
Confidence            9999999999999999999999975                                     345778999999999999


Q ss_pred             cccccCCCChHHHHHHH--cCcHHHHHHHHHcCCCCCccCCCCChHHHHHHH--------------cCCHHHHHHHHHcC
Q psy4998         116 VNNQAKHNITPLHVACK--WGKVAMVELLISKGANIEAKTRDGLTPLHCAAR--------------SGHDNVIDILIEKG  179 (318)
Q Consensus       116 ~~~~~~~~~~~l~~a~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~--------------~~~~~~~~~ll~~~  179 (318)
                      ++..+..|.||||+|+.  .++.+++++|++.|++++.++..|.||||+|+.              .++.+++++|+++|
T Consensus       310 IN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~G  389 (764)
T PHA02716        310 LHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLG  389 (764)
T ss_pred             eeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCC
Confidence            99999999999998764  468899999999999999999999999999875              36789999999999


Q ss_pred             CCCcCCCCCCCcHhHH----HhhcCCHHHHHHHHHcCC------------------------------------------
Q psy4998         180 AALYSKTKAGFTPLHI----ASHFGQLNMVRYLVENGA------------------------------------------  213 (318)
Q Consensus       180 ~~~~~~~~~~~t~l~~----a~~~~~~~~~~~Ll~~g~------------------------------------------  213 (318)
                      ++++.++..|.||||.    |...+..+++++|++.|+                                          
T Consensus       390 ADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~  469 (764)
T PHA02716        390 ADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYE  469 (764)
T ss_pred             CCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhh
Confidence            9999999999999993    233567888888887543                                          


Q ss_pred             -------------------CCCcCCCCCCCHHHHHHHcCCHh-----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH-
Q psy4998         214 -------------------NVNATTNLGYTPLHQASQQGRVL-----IIDLLLGAGAQPNATTNHGQTALNIAQKLGYI-  268 (318)
Q Consensus       214 -------------------~~~~~~~~g~t~l~~A~~~~~~~-----~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~-  268 (318)
                                         +++..+..|.||||+|+..|+.+     ++++|++.|+|++.+|..|+|||++|+++|+. 
T Consensus       470 ~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~  549 (764)
T PHA02716        470 PYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLS  549 (764)
T ss_pred             hccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCcc
Confidence                               12344677999999999998764     55999999999999999999999999999976 


Q ss_pred             ----HHHHHhhhcccc
Q psy4998         269 ----SVIETLKIVTET  280 (318)
Q Consensus       269 ----~~~~~l~~~~~~  280 (318)
                          ++|++|.+.+..
T Consensus       550 ~~~~eIvk~LL~~ga~  565 (764)
T PHA02716        550 GHQWYIVKNILDKRPN  565 (764)
T ss_pred             ccHHHHHHHHHhcCCC
Confidence                999999987765

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=8.9e-45  Score=309.86  Aligned_cols=266  Identities=18%  Similarity=0.240  Sum_probs=185.1

Q ss_pred             ccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCC--CHHHHHHHH
Q psy4998           4 QENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKD--DCKAAALLL   77 (318)
Q Consensus         4 ~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~--~~~~~~~ll   77 (318)
                      ..++.++|++|+++|++++.++..|.||||+|+..|+.+++++|++++++    +..|.||||+|+..+  ..+++++|+
T Consensus        48 ~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl  127 (446)
T PHA02946         48 KGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLV  127 (446)
T ss_pred             cCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHH
Confidence            44567888888888888888888888888888888888888888888654    566788888887765  477888888


Q ss_pred             hCCCCCCC-CCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcC--cHHHHHHHHHcCCCCCccCC
Q psy4998          78 ENDHSPDV-KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWG--KVAMVELLISKGANIEAKTR  154 (318)
Q Consensus        78 ~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~L~~~~~~~~~~~~  154 (318)
                      ++|++++. .+..|.|||+ |+..++.+++++|++.|++++..+..|.||||.|+..+  +.+++++|++.|++++.+|.
T Consensus       128 ~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~  206 (446)
T PHA02946        128 QYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDH  206 (446)
T ss_pred             HcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCC
Confidence            88888774 5677777875 55567777777777777777777777777777766544  35777777777777777777


Q ss_pred             CCChHHHHHHHcC--CHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCC-HHHHHHHHHcCCCCC---------------
Q psy4998         155 DGLTPLHCAARSG--HDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQ-LNMVRYLVENGANVN---------------  216 (318)
Q Consensus       155 ~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~-~~~~~~Ll~~g~~~~---------------  216 (318)
                      .|.||||+|+..+  +.+++++|++ |++++.++..|.||||+|+..++ .+++++|+++|..++               
T Consensus       207 ~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~  285 (446)
T PHA02946        207 DGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDV  285 (446)
T ss_pred             CCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHH
Confidence            7777777777765  5677777763 67777777777777777777666 366677777665421               


Q ss_pred             -----cC-CCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcc
Q psy4998         217 -----AT-TNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVT  278 (318)
Q Consensus       217 -----~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~  278 (318)
                           .. ...|.||||+|+..|+.+++++|+++|+       .|.||+++|+..++.+++++|...+
T Consensus       286 ~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~-------~~~t~L~~A~~~~~~~~v~~Ll~~g  346 (446)
T PHA02946        286 LEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI-------ICEDAMYYAVLSEYETMVDYLLFNH  346 (446)
T ss_pred             HHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC-------ccccHHHHHHHhCHHHHHHHHHHCC
Confidence                 11 1235566666666666666666555542       2344555555555555555544444

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.8e-44  Score=308.04  Aligned_cols=270  Identities=17%  Similarity=0.252  Sum_probs=242.2

Q ss_pred             CccccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcC--CHHHHHHHHhcCCC-----CCCChhHHHHHHhCCCHHHH
Q psy4998           1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQG--HDRVVAVLLENDTK-----GKVKLPALHIAAKKDDCKAA   73 (318)
Q Consensus         1 lA~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g--~~~~~~~ll~~~~~-----~~~~~~~l~~A~~~~~~~~~   73 (318)
                      +|++.|+.++|++|+++|++++.+|..|.||||+|+..+  ..+++++|++.++.     +..+.|||+ |+..++.+++
T Consensus        78 ~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv  156 (446)
T PHA02946         78 IASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVF  156 (446)
T ss_pred             HHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHH
Confidence            489999999999999999999999999999999999876  48999999998764     456789997 6667999999


Q ss_pred             HHHHhCCCCCCCCCCCCchHHHHHHHcCC--HHHHHHHHhccCCcccccCCCChHHHHHHHcC--cHHHHHHHHHcCCCC
Q psy4998          74 ALLLENDHSPDVKSNSHFTPLHIAAHYGN--TNIAELLIQKHANVNNQAKHNITPLHVACKWG--KVAMVELLISKGANI  149 (318)
Q Consensus        74 ~~ll~~~~~~~~~~~~~~~~l~~a~~~~~--~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~L~~~~~~~  149 (318)
                      +.|++.|.+++..+..|.||||.|+..++  .+++++|++.|++++..+..|.||||+|+..+  +.+++++|+. |+++
T Consensus       157 ~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadi  235 (446)
T PHA02946        157 KKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDV  235 (446)
T ss_pred             HHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCC
Confidence            99999999999999999999999987654  68999999999999999999999999999886  7899999985 8999


Q ss_pred             CccCCCCChHHHHHHHcCC-HHHHHHHHHcCCCCc--------------------CC-CCCCCcHhHHHhhcCCHHHHHH
Q psy4998         150 EAKTRDGLTPLHCAARSGH-DNVIDILIEKGAALY--------------------SK-TKAGFTPLHIASHFGQLNMVRY  207 (318)
Q Consensus       150 ~~~~~~~~~~l~~a~~~~~-~~~~~~ll~~~~~~~--------------------~~-~~~~~t~l~~a~~~~~~~~~~~  207 (318)
                      +.++..|.||||+|+..++ .+++++|+.+|...+                    .. ...|.||||+|+..|+.+++++
T Consensus       236 n~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~  315 (446)
T PHA02946        236 NKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKY  315 (446)
T ss_pred             CCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHH
Confidence            9999999999999999988 589999999876431                    11 1347799999999999999999


Q ss_pred             HHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcccc
Q psy4998         208 LVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTET  280 (318)
Q Consensus       208 Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  280 (318)
                      |+++|+       .|.||||+|+..++.+++++|+.+|++++.. ..|.||+++|++.++.++++.|......
T Consensus       316 Ll~~~~-------~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~~~~~~~~~ll~~~~~  380 (446)
T PHA02946        316 LLDNDI-------ICEDAMYYAVLSEYETMVDYLLFNHFSVDSV-VNGHTCMSECVRLNNPVILSKLMLHNPT  380 (446)
T ss_pred             HHHCCC-------ccccHHHHHHHhCHHHHHHHHHHCCCCCCCc-cccccHHHHHHHcCCHHHHHHHHhcCcc
Confidence            999874       4789999999999999999999999999986 5899999999999999999999885443

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6e-44  Score=323.20  Aligned_cols=279  Identities=24%  Similarity=0.311  Sum_probs=215.4

Q ss_pred             ccccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHHH
Q psy4998           2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALLL   77 (318)
Q Consensus         2 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~ll   77 (318)
                      |++.|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|+.    +..+.|||+.|+..++.+++++|+
T Consensus       152 ~i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll  231 (682)
T PHA02876        152 RIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAII  231 (682)
T ss_pred             HHHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            5678999999999999999999999999999999999999999999998764    345667777777777776666554


Q ss_pred             h-----------------------------CCCCCCCCCCCCchHHHHHHHcCCH-HHHHHHHhccCCcccccCCCChHH
Q psy4998          78 E-----------------------------NDHSPDVKSNSHFTPLHIAAHYGNT-NIAELLIQKHANVNNQAKHNITPL  127 (318)
Q Consensus        78 ~-----------------------------~~~~~~~~~~~~~~~l~~a~~~~~~-~~~~~ll~~~~~~~~~~~~~~~~l  127 (318)
                      +                             .|.+++..+..|.||||+|+..++. +++++|++.|++++..+..|.|||
T Consensus       232 ~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpL  311 (682)
T PHA02876        232 DNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPL  311 (682)
T ss_pred             hcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence            4                             3445556666788888888888775 577888888888887777888888


Q ss_pred             HHHHHcC-cHHHHHHHHHcCCCCCccCCCCChHHHHHHHc-CCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHH
Q psy4998         128 HVACKWG-KVAMVELLISKGANIEAKTRDGLTPLHCAARS-GHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV  205 (318)
Q Consensus       128 ~~a~~~~-~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~-~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  205 (318)
                      |.|+..| ..++++.|+..|++++..+..|.||||+|+.. +..+++++|++.|++++.++..|.||||+|+..++.+++
T Consensus       312 h~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv  391 (682)
T PHA02876        312 YLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVII  391 (682)
T ss_pred             HHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHH
Confidence            8888877 47778888888888777777778888887764 357777777777887777777788888888887888887


Q ss_pred             HHHHHcCCCCCcCCCCCCCHHHHHHHcCC-HhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHhhhcccc
Q psy4998         206 RYLVENGANVNATTNLGYTPLHQASQQGR-VLIIDLLLGAGAQPNATTNHGQTALNIAQKLG-YISVIETLKIVTET  280 (318)
Q Consensus       206 ~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~-~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~~~~~l~~~~~~  280 (318)
                      ++|+++|++++..+..|.||||+|+..++ ..++++|+++|++++.+|..|+||||+|+..+ +.+++++|...+..
T Consensus       392 ~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad  468 (682)
T PHA02876        392 NTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGAD  468 (682)
T ss_pred             HHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCC
Confidence            77777777777777777777777776544 45677777777777777777777777777765 56777777776654

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1e-43  Score=310.81  Aligned_cols=250  Identities=30%  Similarity=0.438  Sum_probs=241.3

Q ss_pred             CccccChHHHHHHHHhcCCCCCcCCCCCCCHHHH-----HHHcCCHHHHHHHHhcCCC----CCCChhHHHHHH--hCCC
Q psy4998           1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAV-----AMQQGHDRVVAVLLENDTK----GKVKLPALHIAA--KKDD   69 (318)
Q Consensus         1 lA~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~-----A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~--~~~~   69 (318)
                      +|++.|+.++|++|+++|++++..+..+.||||+     |+..|+.+++++|++.++.    +..|.||||+|+  ..|+
T Consensus        41 ~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~  120 (480)
T PHA03100         41 LAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNS  120 (480)
T ss_pred             hhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccCh
Confidence            5899999999999999999999999999999999     9999999999999999765    556889999999  9999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCchHHHHHHHcC--CHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCC
Q psy4998          70 CKAAALLLENDHSPDVKSNSHFTPLHIAAHYG--NTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGA  147 (318)
Q Consensus        70 ~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~  147 (318)
                      .+++++|+++|++++..+..|.||||+|+..+  +.+++++|+++|++++..+..|.||||.|+..|+.+++++|++.|+
T Consensus       121 ~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga  200 (480)
T PHA03100        121 YSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGA  200 (480)
T ss_pred             HHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence            99999999999999999999999999999999  9999999999999999999999999999999999999999999999


Q ss_pred             CCCccCCCC------ChHHHHHHHcCC--HHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCC
Q psy4998         148 NIEAKTRDG------LTPLHCAARSGH--DNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATT  219 (318)
Q Consensus       148 ~~~~~~~~~------~~~l~~a~~~~~--~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  219 (318)
                      +++..+..+      .+|+|.|+..++  .+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.++
T Consensus       201 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d  280 (480)
T PHA03100        201 DINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVN  280 (480)
T ss_pred             CccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence            999888888      899999999999  999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHcCCHhHHHHHHhCCCCCCC
Q psy4998         220 NLGYTPLHQASQQGRVLIIDLLLGAGAQPNA  250 (318)
Q Consensus       220 ~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~  250 (318)
                      ..|.||+++|+..++.+++++|+++|++++.
T Consensus       281 ~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~~  311 (480)
T PHA03100        281 KYGDTPLHIAILNNNKEIFKLLLNNGPSIKT  311 (480)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhcCCCHHH
Confidence            9999999999999999999999999998864

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.6e-43  Score=305.39  Aligned_cols=276  Identities=19%  Similarity=0.271  Sum_probs=245.1

Q ss_pred             cccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHc--CCHHHHHHHHhcCCCCC---CChhHHHHHHhCC------CHH
Q psy4998           3 AQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQ--GHDRVVAVLLENDTKGK---VKLPALHIAAKKD------DCK   71 (318)
Q Consensus         3 ~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~--g~~~~~~~ll~~~~~~~---~~~~~l~~A~~~~------~~~   71 (318)
                      +...+.++|++|+++|++++.. ..|.|||+.++..  ++.+++++|+++|++..   .+.|||+.|+.++      +.+
T Consensus        11 ~~~~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~   89 (494)
T PHA02989         11 SDTVDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKGYIETPLCAVLRNREITSNKIKK   89 (494)
T ss_pred             CCcCcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCCCCCCcHHHHHhccCcchhhHHH
Confidence            4568899999999999999988 6788998766654  37899999999987632   3579999998754      478


Q ss_pred             HHHHHHhCCCCCCCCCCCCchHHHHHHHc---CCHHHHHHHHhccCCc-ccccCCCChHHHHHHHc--CcHHHHHHHHHc
Q psy4998          72 AAALLLENDHSPDVKSNSHFTPLHIAAHY---GNTNIAELLIQKHANV-NNQAKHNITPLHVACKW--GKVAMVELLISK  145 (318)
Q Consensus        72 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~a~~~--~~~~~~~~L~~~  145 (318)
                      +++.|+++|++++..+..|.|||+.|+..   ++.+++++|+++|+++ +..+..|.||||+|+..  ++.+++++|+++
T Consensus        90 iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~  169 (494)
T PHA02989         90 IVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSF  169 (494)
T ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHc
Confidence            99999999999999999999999988765   6899999999999999 78889999999998764  589999999999


Q ss_pred             CCCCCc-cCCCCChHHHHHHHcC----CHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhc------CCHHHHHHHHHcCCC
Q psy4998         146 GANIEA-KTRDGLTPLHCAARSG----HDNVIDILIEKGAALYSKTKAGFTPLHIASHF------GQLNMVRYLVENGAN  214 (318)
Q Consensus       146 ~~~~~~-~~~~~~~~l~~a~~~~----~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~------~~~~~~~~Ll~~g~~  214 (318)
                      |++++. .+..|.|||+.|+..+    +.+++++|+++|++++..+..+.+++|.++..      +..+++++|+. |++
T Consensus       170 Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~ad  248 (494)
T PHA02989        170 GVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIK  248 (494)
T ss_pred             CCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCC
Confidence            999987 6788999999998765    89999999999999999998899999887654      35678887665 799


Q ss_pred             CCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcccc
Q psy4998         215 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTET  280 (318)
Q Consensus       215 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  280 (318)
                      ++.+|..|.||||+|+..|+.+++++|+++|+|++.+|..|.||+++|++.|+.+++++|......
T Consensus       249 vn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~  314 (494)
T PHA02989        249 INKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPG  314 (494)
T ss_pred             CCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999999999999999999999999876543

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.8e-43  Score=307.59  Aligned_cols=273  Identities=26%  Similarity=0.351  Sum_probs=238.5

Q ss_pred             CccccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC--CCCChhHHHHHHhCCCHHHHHHHHh
Q psy4998           1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK--GKVKLPALHIAAKKDDCKAAALLLE   78 (318)
Q Consensus         1 lA~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~--~~~~~~~l~~A~~~~~~~~~~~ll~   78 (318)
                      +||+.|+.++|++|++.|++++.++..|.||||+||..|+.+++++|++.+..  ...+.++++.|+..++.+++++|+.
T Consensus        43 ~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~  122 (477)
T PHA02878         43 QAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILT  122 (477)
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHh
Confidence            48999999999999999999999999999999999999999999999987543  3456789999999999999999998


Q ss_pred             CCCCCCCCCCCCchHHHHHHHcC--CHHHHHHHHhccCCcccccCC-CChHHHHHHHcCcHHHHHHHHHcCCCCCccCCC
Q psy4998          79 NDHSPDVKSNSHFTPLHIAAHYG--NTNIAELLIQKHANVNNQAKH-NITPLHVACKWGKVAMVELLISKGANIEAKTRD  155 (318)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~  155 (318)
                      .+.......  ....+......+  ..+++++|+++|++++..+.. |.||||+|+..|+.+++++|++.|++++..+..
T Consensus       123 ~~~~~~~~~--~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~  200 (477)
T PHA02878        123 NRYKNIQTI--DLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKT  200 (477)
T ss_pred             CcccCcccC--cHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCC
Confidence            764322211  111121111122  346999999999999999988 999999999999999999999999999999999


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhc-CCHHHHHHHHHcCCCCCcCCC-CCCCHHHHHHHcC
Q psy4998         156 GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHF-GQLNMVRYLVENGANVNATTN-LGYTPLHQASQQG  233 (318)
Q Consensus       156 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~-~~~~~~~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~  233 (318)
                      |.||||.|+..++.+++++|++.|++++.++..|.||||+|+.. ++.+++++|+++|++++..+. .|.||||+|  .+
T Consensus       201 g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~  278 (477)
T PHA02878        201 NNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IK  278 (477)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--cc
Confidence            99999999999999999999999999999999999999999975 789999999999999999886 799999999  56


Q ss_pred             CHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHhhhc
Q psy4998         234 RVLIIDLLLGAGAQPNATTNHGQTALNIAQKLG-YISVIETLKIV  277 (318)
Q Consensus       234 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~~~~~l~~~  277 (318)
                      +.+++++|+++|+|++..|..|.||+++|++.+ ..+++++|...
T Consensus       279 ~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~  323 (477)
T PHA02878        279 SERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISN  323 (477)
T ss_pred             CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHH
Confidence            789999999999999999999999999999754 45677766543

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.2e-43  Score=299.92  Aligned_cols=273  Identities=23%  Similarity=0.356  Sum_probs=245.3

Q ss_pred             CccccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC---------------------------
Q psy4998           1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK---------------------------   53 (318)
Q Consensus         1 lA~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~---------------------------   53 (318)
                      .|++.|+.++|++|++.|++++..+..|.||||.|+..|+.+++++|++.+..                           
T Consensus        41 ~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~  120 (434)
T PHA02874         41 DAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIK  120 (434)
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCC
Confidence            38999999999999999999999999999999999999999999999987542                           


Q ss_pred             CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHc
Q psy4998          54 GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKW  133 (318)
Q Consensus        54 ~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~  133 (318)
                      +..+.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||.|+..
T Consensus       121 ~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~  200 (434)
T PHA02874        121 DAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEY  200 (434)
T ss_pred             CCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcC-CHHHHHHHHHcC
Q psy4998         134 GKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFG-QLNMVRYLVENG  212 (318)
Q Consensus       134 ~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~~Ll~~g  212 (318)
                      |+.+++++|++.|.+++..+..|.||||.|+..+. +.+.+|+ .+++++.++..|.||||+|+..+ +.+++++|+++|
T Consensus       201 g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~g  278 (434)
T PHA02874        201 GDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHK  278 (434)
T ss_pred             CCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCc
Confidence            99999999999999999999999999999999875 5666666 68889999999999999999875 789999999999


Q ss_pred             CCCCcCCCCCCCHHHHHHHcC-CHhHHHHHHhCCCCCCCCCCCC-CCHHHHHHHcCCHHHHHHhh
Q psy4998         213 ANVNATTNLGYTPLHQASQQG-RVLIIDLLLGAGAQPNATTNHG-QTALNIAQKLGYISVIETLK  275 (318)
Q Consensus       213 ~~~~~~~~~g~t~l~~A~~~~-~~~~~~~Ll~~g~~~~~~~~~g-~t~l~~A~~~~~~~~~~~l~  275 (318)
                      ++++.++..|.||||+|++.+ ..++++.|+..++.+...+..+ .+++..+...++.++.++++
T Consensus       279 ad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  343 (434)
T PHA02874        279 ADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVLIKEADKLKDSDFLEHIEIKDNKEFSDFIK  343 (434)
T ss_pred             CCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCchhhccccchhHHHHHHHHhccchHHHHHH
Confidence            999999999999999999987 7789999999988776555544 45666666666655544444

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.6e-41  Score=307.49  Aligned_cols=253  Identities=29%  Similarity=0.338  Sum_probs=215.9

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCH
Q psy4998          28 GFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNT  103 (318)
Q Consensus        28 ~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~  103 (318)
                      ..++++.|+..|+.+++++|++.|.+    +..|.||||+|+..|+.+++++|+++|++++..+..|.+||+.|+..++.
T Consensus       145 ~~~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~  224 (682)
T PHA02876        145 YMKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNI  224 (682)
T ss_pred             hhHHHHHHHHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCH
Confidence            45789999999999999999998764    56789999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhcc-----------------------------CCcccccCCCChHHHHHHHcCcH-HHHHHHHHcCCCCCccC
Q psy4998         104 NIAELLIQKH-----------------------------ANVNNQAKHNITPLHVACKWGKV-AMVELLISKGANIEAKT  153 (318)
Q Consensus       104 ~~~~~ll~~~-----------------------------~~~~~~~~~~~~~l~~a~~~~~~-~~~~~L~~~~~~~~~~~  153 (318)
                      +++++|++.+                             .+++..+..|.||||+|+..++. +++++|++.|++++..+
T Consensus       225 ~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d  304 (682)
T PHA02876        225 DTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKN  304 (682)
T ss_pred             HHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcC
Confidence            8887776544                             44555666788888888888875 58888888888888888


Q ss_pred             CCCChHHHHHHHcC-CHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhc-CCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Q psy4998         154 RDGLTPLHCAARSG-HDNVIDILIEKGAALYSKTKAGFTPLHIASHF-GQLNMVRYLVENGANVNATTNLGYTPLHQASQ  231 (318)
Q Consensus       154 ~~~~~~l~~a~~~~-~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~-~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~  231 (318)
                      ..|.||||+|+..| ..+.+++|+..|++++..+..|.||||+|+.. ++.+++++|++.|++++.++..|.||||+|+.
T Consensus       305 ~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~  384 (682)
T PHA02876        305 IKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAV  384 (682)
T ss_pred             CCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHH
Confidence            88888999888888 58888888888888888888888899888875 46788888888888888888888899999988


Q ss_pred             cCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHhhhcccc
Q psy4998         232 QGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGY-ISVIETLKIVTET  280 (318)
Q Consensus       232 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~-~~~~~~l~~~~~~  280 (318)
                      .|+.+++++|+++|++++..+..|.||+|+|+..++ ..++++|...+..
T Consensus       385 ~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gad  434 (682)
T PHA02876        385 RNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGAN  434 (682)
T ss_pred             cCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCC
Confidence            888999999998888888888888899998887665 4567777766554

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=6.4e-42  Score=301.14  Aligned_cols=271  Identities=22%  Similarity=0.214  Sum_probs=236.1

Q ss_pred             ccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCC--HHHHHHHHhcCCC----CCCChhHHHHH-------------
Q psy4998           4 QENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGH--DRVVAVLLENDTK----GKVKLPALHIA-------------   64 (318)
Q Consensus         4 ~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~--~~~~~~ll~~~~~----~~~~~~~l~~A-------------   64 (318)
                      ..++.++|++|+++|++++..+..|.||||+|+..|+  .+++++|++.|++    +..|.||||.|             
T Consensus       188 ~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvk  267 (764)
T PHA02716        188 MYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITN  267 (764)
T ss_pred             ccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHH
Confidence            4568899999999999999999999999999999995  4999999999765    56688999864             


Q ss_pred             ------------------------HhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHH--cCCHHHHHHHHhccCCccc
Q psy4998          65 ------------------------AKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAH--YGNTNIAELLIQKHANVNN  118 (318)
Q Consensus        65 ------------------------~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~~~ll~~~~~~~~  118 (318)
                                              +..|+.+++++|+++|++++..+..|.||||+|+.  .++.+++++|++.|++++.
T Consensus       268 iLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~  347 (764)
T PHA02716        268 IYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNE  347 (764)
T ss_pred             HHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCcc
Confidence                                    45688899999999999999999999999999875  4578999999999999999


Q ss_pred             ccCCCChHHHHHHH--------------cCcHHHHHHHHHcCCCCCccCCCCChHHHH----HHHcCCHHHHHHHHHcCC
Q psy4998         119 QAKHNITPLHVACK--------------WGKVAMVELLISKGANIEAKTRDGLTPLHC----AARSGHDNVIDILIEKGA  180 (318)
Q Consensus       119 ~~~~~~~~l~~a~~--------------~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~----a~~~~~~~~~~~ll~~~~  180 (318)
                      ++..|.||||.|+.              .++.+++++|++.|++++.++..|.||||.    +...+..+++++|++.++
T Consensus       348 kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~  427 (764)
T PHA02716        348 PDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKV  427 (764)
T ss_pred             CCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcc
Confidence            99999999999865              368999999999999999999999999994    233466788888877532


Q ss_pred             -------------------------------------------------------------CCcCCCCCCCcHhHHHhhc
Q psy4998         181 -------------------------------------------------------------ALYSKTKAGFTPLHIASHF  199 (318)
Q Consensus       181 -------------------------------------------------------------~~~~~~~~~~t~l~~a~~~  199 (318)
                                                                                   +.+..+..|+||||+|+..
T Consensus       428 ~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~  507 (764)
T PHA02716        428 LNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIIS  507 (764)
T ss_pred             hhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHc
Confidence                                                                         1133466799999999999


Q ss_pred             CCH-----HHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCH-----hHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Q psy4998         200 GQL-----NMVRYLVENGANVNATTNLGYTPLHQASQQGRV-----LIIDLLLGAGAQPNATTNHGQTALNIAQKLGYIS  269 (318)
Q Consensus       200 ~~~-----~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~-----~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~  269 (318)
                      |+.     +++++|+++|++++.++..|.||||+|+++|+.     ++++.|+++|++++..      .+++|..+++.+
T Consensus       508 g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~~~~------~l~~~~~~~~~~  581 (764)
T PHA02716        508 HTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNVDIV------IIFLDKCYANGK  581 (764)
T ss_pred             CCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCcchH------HHHHHhhhhhhH
Confidence            876     556999999999999999999999999999976     9999999999998755      589999999999


Q ss_pred             HHHHhhhcccc
Q psy4998         270 VIETLKIVTET  280 (318)
Q Consensus       270 ~~~~l~~~~~~  280 (318)
                      ++.+|.+....
T Consensus       582 ~~~ll~~~~~~  592 (764)
T PHA02716        582 FPSLLLSEDDI  592 (764)
T ss_pred             HHHHHHHcchh
Confidence            99999887663

>KOG0510|consensus

Probab=100.00  E-value=7.1e-43  Score=296.23  Aligned_cols=280  Identities=30%  Similarity=0.473  Sum_probs=248.5

Q ss_pred             ccccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHHH
Q psy4998           2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALLL   77 (318)
Q Consensus         2 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~ll   77 (318)
                      |+..+..+.|++|++.|++....+..+.+|+|+|+..|+++.++.|++.+.+    +..+.||||.|+..++.|..+.|+
T Consensus        95 a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li  174 (929)
T KOG0510|consen   95 AVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELI  174 (929)
T ss_pred             HhhcchHHHHHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHH
Confidence            6778899999999999999999999999999999999999999999998654    566788999999999999889999


Q ss_pred             hCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHh-----ccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCC---
Q psy4998          78 ENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQ-----KHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANI---  149 (318)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~-----~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~---  149 (318)
                      +.|+++...+..|..|+|.|+++|..++.+.++.     .+..++..+..+.+|||.|+..|++++++.+++.|...   
T Consensus       175 ~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~  254 (929)
T KOG0510|consen  175 NKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADV  254 (929)
T ss_pred             hcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchh
Confidence            9999999999999999999999999999999988     56678888888999999999999999999999886442   


Q ss_pred             ------------CccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHH-cC-CCC
Q psy4998         150 ------------EAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE-NG-ANV  215 (318)
Q Consensus       150 ------------~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~g-~~~  215 (318)
                                  +..|..|.||||+|++.|..+.++.|+..|++++.++.++.||||.|+.+|++.+++.|++ .| ...
T Consensus       255 ~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rll  334 (929)
T KOG0510|consen  255 QLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLL  334 (929)
T ss_pred             hhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCcccc
Confidence                        3447789999999999999999999999999999999999999999999999999999998 43 345


Q ss_pred             CcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCC---CCCCCCCCHHHHHHHcCCHHHHHHhhhccccc
Q psy4998         216 NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN---ATTNHGQTALNIAQKLGYISVIETLKIVTETT  281 (318)
Q Consensus       216 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~---~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  281 (318)
                      +..|..|.||||+|++.|+.+++++|++.|+...   ..|..|.||||.|+.+|+..+|+.|.+.+...
T Consensus       335 ne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  335 NESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADI  403 (929)
T ss_pred             ccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCce
Confidence            7778889999999999999999999999999876   44899999999999999999999999888764

>KOG0510|consensus

Probab=100.00  E-value=2.1e-42  Score=293.35  Aligned_cols=305  Identities=25%  Similarity=0.366  Sum_probs=268.9

Q ss_pred             CccccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHH
Q psy4998           1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALL   76 (318)
Q Consensus         1 lA~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~l   76 (318)
                      +|+..|+++.++.|+++|++++..++.+.||||.||..++.|..+.|++.+++    +..++.++|.|+++|..++.+..
T Consensus       127 ~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~  206 (929)
T KOG0510|consen  127 LAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIF  206 (929)
T ss_pred             hccccchHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhh
Confidence            58899999999999999999999999999999999999999988999998765    66788999999999999999999


Q ss_pred             Hh-----CCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCC---------------cccccCCCChHHHHHHHcCcH
Q psy4998          77 LE-----NDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHAN---------------VNNQAKHNITPLHVACKWGKV  136 (318)
Q Consensus        77 l~-----~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~---------------~~~~~~~~~~~l~~a~~~~~~  136 (318)
                      +.     .+..++..+..+.+|||.|+..|++++++.+++.+..               ++..|..|.||||+|++.|++
T Consensus       207 l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~  286 (929)
T KOG0510|consen  207 LPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGP  286 (929)
T ss_pred             hccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCCh
Confidence            98     6677899999999999999999999999999998764               344567899999999999999


Q ss_pred             HHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHH-cC-CCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCC
Q psy4998         137 AMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE-KG-AALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN  214 (318)
Q Consensus       137 ~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~-~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  214 (318)
                      ++++.|+..|++++.++.++.||||.|+++|+++.++.|++ .+ ...+..|..|.||||.|++.|+..+++.|+++|+.
T Consensus       287 ~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~  366 (929)
T KOG0510|consen  287 ESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGAL  366 (929)
T ss_pred             hHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChh
Confidence            99999999999999999999999999999999999999998 44 34577888999999999999999999999999998


Q ss_pred             CC---cCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccceeccchhhhc
Q psy4998         215 VN---ATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETTIVTTTVTTIE  291 (318)
Q Consensus       215 ~~---~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  291 (318)
                      ..   ..|.+|.||||.|+..|+..+++.|+.+|+++..+|+.|.+++++--.  ..--+.-+++.....+.+.....++
T Consensus       367 ~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~~~~~--~~~p~~~~~~~~n~c~~~~~i~~~p  444 (929)
T KOG0510|consen  367 FLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFDTRPD--RCLPVFVHRSPFNKCPTTELIEPLP  444 (929)
T ss_pred             hhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeecccccccccccccc--ccccHHHhhCCCCCcchhhhhccch
Confidence            77   569999999999999999999999999999999999999999998322  2223345555656666677777778


Q ss_pred             cccccccccccceeee
Q psy4998         292 EKYRVVAPEAMQEVYM  307 (318)
Q Consensus       292 ~~~~~~~~~~~~~~~~  307 (318)
                      +.++++...++...-+
T Consensus       445 e~~e~vlD~c~l~~~e  460 (929)
T KOG0510|consen  445 ECFEIVLDFCILKSQE  460 (929)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            8777776665554433

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.6e-41  Score=269.51  Aligned_cols=233  Identities=20%  Similarity=0.201  Sum_probs=180.9

Q ss_pred             cChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC--CCCChhHHHHHHhCCCHHHHHHHHhCCCC
Q psy4998           5 ENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK--GKVKLPALHIAAKKDDCKAAALLLENDHS   82 (318)
Q Consensus         5 ~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~--~~~~~~~l~~A~~~~~~~~~~~ll~~~~~   82 (318)
                      .++.+++++|+++|++  ..|.+|.||||+|+..|+.+++++|++.++.  ...+.||||+|+..|+.+++++|++.|++
T Consensus         9 ~~~~~~~~~Lis~~a~--~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d~~TpLh~Aa~~g~~eiV~lLL~~Gad   86 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF--KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGMD   86 (284)
T ss_pred             cCHHHHHHHHHhCCCC--CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
Confidence            4678999999998885  5788899999999999999999999988654  23456888888888888888888888888


Q ss_pred             CCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCC-ChHHHHHHHcCcHHHHHHHHHcCCCCCccC-CCCChHH
Q psy4998          83 PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHN-ITPLHVACKWGKVAMVELLISKGANIEAKT-RDGLTPL  160 (318)
Q Consensus        83 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~l  160 (318)
                      ++..+..|.||||+|+..|+.+++++|++.|++++..+..| .||||+|+..|+.+++++|++.+.+.  .+ ..|.|||
T Consensus        87 vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpL  164 (284)
T PHA02791         87 DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCI  164 (284)
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHH
Confidence            88888888888888888888888888888888877766666 47888888888888888888775432  12 2467788


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcH-hHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHH
Q psy4998         161 HCAARSGHDNVIDILIEKGAALYSKTKAGFTP-LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIID  239 (318)
Q Consensus       161 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~-l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~  239 (318)
                      |+|+..|+.+++++|+++|++++.++..|.|| ||+|+..|+.+++++|+++|++++.++..+ ++|      +..|+++
T Consensus       165 h~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l------~~~e~~~  237 (284)
T PHA02791        165 HITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL------DDAEIAK  237 (284)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC------CCHHHHH
Confidence            88888888888888888888777777777765 788888888888888888888887777733 444      6777888


Q ss_pred             HHHhCCCCC
Q psy4998         240 LLLGAGAQP  248 (318)
Q Consensus       240 ~Ll~~g~~~  248 (318)
                      +||++.++.
T Consensus       238 ~ll~~~~~~  246 (284)
T PHA02791        238 MIIEKHVEY  246 (284)
T ss_pred             HHHHhhhhh
Confidence            888776554

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.9e-41  Score=267.45  Aligned_cols=235  Identities=15%  Similarity=0.161  Sum_probs=212.0

Q ss_pred             cCCHHHHHHHHhcCCC--CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCC
Q psy4998          38 QGHDRVVAVLLENDTK--GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHAN  115 (318)
Q Consensus        38 ~g~~~~~~~ll~~~~~--~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~  115 (318)
                      .++.+++++|++.++.  +..|.||||+|+..|+.++++.|+++|++++..+  +.||||+|+..|+.+++++|++.|++
T Consensus         9 ~~~~~~~~~Lis~~a~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gad   86 (284)
T PHA02791          9 WKSKQLKSFLSSKDAFKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMD   86 (284)
T ss_pred             cCHHHHHHHHHhCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCC
Confidence            4788999999997654  5668999999999999999999999999887654  68999999999999999999999999


Q ss_pred             cccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCC-ChHHHHHHHcCCHHHHHHHHHcCCCCcCCC-CCCCcHh
Q psy4998         116 VNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG-LTPLHCAARSGHDNVIDILIEKGAALYSKT-KAGFTPL  193 (318)
Q Consensus       116 ~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~t~l  193 (318)
                      ++..+..|.||||+|+..|+.+++++|++.|++++..+..| .||||+|+..|+.+++++|++++...  .+ ..|.|||
T Consensus        87 vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpL  164 (284)
T PHA02791         87 DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCI  164 (284)
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHH
Confidence            99999999999999999999999999999999998888877 58999999999999999999987543  22 2489999


Q ss_pred             HHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCH-HHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q psy4998         194 HIASHFGQLNMVRYLVENGANVNATTNLGYTP-LHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIE  272 (318)
Q Consensus       194 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~  272 (318)
                      |+|+..|+.+++++|+++|++++.++..|.|| ||+|+..|+.+++++|+++|++++.+|..| +++      ++.|+++
T Consensus       165 h~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l------~~~e~~~  237 (284)
T PHA02791        165 HITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL------DDAEIAK  237 (284)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC------CCHHHHH
Confidence            99999999999999999999999999999977 999999999999999999999999999854 544      8899999


Q ss_pred             Hhhhcccccee
Q psy4998         273 TLKIVTETTIV  283 (318)
Q Consensus       273 ~l~~~~~~~~~  283 (318)
                      +|.....+.-.
T Consensus       238 ~ll~~~~~~~~  248 (284)
T PHA02791        238 MIIEKHVEYKS  248 (284)
T ss_pred             HHHHhhhhhcc
Confidence            99977655433

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=8e-41  Score=292.07  Aligned_cols=249  Identities=25%  Similarity=0.318  Sum_probs=233.0

Q ss_pred             ccccC---hHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcC-CHHHHHHHHhcCCC----CCCChhHHHHHH--hCCCHH
Q psy4998           2 AAQEN---HDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQG-HDRVVAVLLENDTK----GKVKLPALHIAA--KKDDCK   71 (318)
Q Consensus         2 A~~~g---~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g-~~~~~~~ll~~~~~----~~~~~~~l~~A~--~~~~~~   71 (318)
                      |+..|   +.+++++|++.|++++..+..|.||||+|+..| +.+++++|++.+.+    +..|.||||+|+  ..++.+
T Consensus        54 a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~  133 (471)
T PHA03095         54 YLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPK  133 (471)
T ss_pred             HHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHH
Confidence            56666   999999999999999999999999999999999 59999999999765    556899999999  567899


Q ss_pred             HHHHHHhCCCCCCCCCCCCchHHHHHHHcC--CHHHHHHHHhccCCcccccCCCChHHHHHHHc--CcHHHHHHHHHcCC
Q psy4998          72 AAALLLENDHSPDVKSNSHFTPLHIAAHYG--NTNIAELLIQKHANVNNQAKHNITPLHVACKW--GKVAMVELLISKGA  147 (318)
Q Consensus        72 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~--~~~~~~~~L~~~~~  147 (318)
                      ++++|+++|++++..+..|.||||+|+..+  +.+++++|++.|++++..+..|.||||.++..  ++.++++.|++.|+
T Consensus       134 iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~  213 (471)
T PHA03095        134 VIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGC  213 (471)
T ss_pred             HHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCC
Confidence            999999999999999999999999999876  68999999999999998888999999998875  68899999999999


Q ss_pred             CCCccCCCCChHHHHHHHcCCH--HHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCH
Q psy4998         148 NIEAKTRDGLTPLHCAARSGHD--NVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTP  225 (318)
Q Consensus       148 ~~~~~~~~~~~~l~~a~~~~~~--~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  225 (318)
                      +++.++..|.||||+|+..+..  .+++.|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus       214 ~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tp  293 (471)
T PHA03095        214 DPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTP  293 (471)
T ss_pred             CCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence            9999999999999999999974  68889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHhHHHHHHhCCCCCCC
Q psy4998         226 LHQASQQGRVLIIDLLLGAGAQPNA  250 (318)
Q Consensus       226 l~~A~~~~~~~~~~~Ll~~g~~~~~  250 (318)
                      ||+|+..|+.+++++|++++++++.
T Consensus       294 l~~A~~~~~~~~v~~LL~~~~~~~~  318 (471)
T PHA03095        294 LSLMVRNNNGRAVRAALAKNPSAET  318 (471)
T ss_pred             HHHHHHhCCHHHHHHHHHhCCCHHH
Confidence            9999999999999999999988753

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.6e-40  Score=281.56  Aligned_cols=247  Identities=27%  Similarity=0.353  Sum_probs=204.5

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHH
Q psy4998          29 FTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTN  104 (318)
Q Consensus        29 ~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~  104 (318)
                      .++|+.|+..|+.+++++|++.|.+    ...|.||||+|+..|+.+++++|+++|++++..+..+.+|||.|+..|+.+
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~   82 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVK   82 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHH
Confidence            4677777777777777777777654    335677888888888888888888888887777778889999999999999


Q ss_pred             HHHHHHhccCCcc-cccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCc
Q psy4998         105 IAELLIQKHANVN-NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY  183 (318)
Q Consensus       105 ~~~~ll~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~  183 (318)
                      ++++|++.|.... ..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++
T Consensus        83 ~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~  162 (413)
T PHA02875         83 AVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD  162 (413)
T ss_pred             HHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC
Confidence            9999998887654 334568899999999999999999999999999888899999999999999999999999999999


Q ss_pred             CCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCC-CCHHHHHHHcCCHhHHHHHHhCCCCCCCC---CCCCCCHH
Q psy4998         184 SKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG-YTPLHQASQQGRVLIIDLLLGAGAQPNAT---TNHGQTAL  259 (318)
Q Consensus       184 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g-~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~---~~~g~t~l  259 (318)
                      .++..|.||||+|+..|+.+++++|+++|++++..+..| .||+|+|+..|+.+++++|+++|+|++..   +..+.||+
T Consensus       163 ~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l  242 (413)
T PHA02875        163 IEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTIL  242 (413)
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHH
Confidence            899999999999999999999999999999999888776 47888899999999999999999998764   66788899


Q ss_pred             HHHHHcC---CHHHHHHhh
Q psy4998         260 NIAQKLG---YISVIETLK  275 (318)
Q Consensus       260 ~~A~~~~---~~~~~~~l~  275 (318)
                      +.+....   ..+.++.+.
T Consensus       243 ~~~~~~~~~~~~~~~~~li  261 (413)
T PHA02875        243 DMICNMCTNLESEAIDALI  261 (413)
T ss_pred             HHHHhhcCCcccHHHHHHH
Confidence            8876443   344444443

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.4e-39  Score=281.24  Aligned_cols=280  Identities=18%  Similarity=0.247  Sum_probs=195.3

Q ss_pred             ccccC---hHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcC--CHHHHHHHHhcCCC------CCCCh------------
Q psy4998           2 AAQEN---HDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQG--HDRVVAVLLENDTK------GKVKL------------   58 (318)
Q Consensus         2 A~~~g---~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g--~~~~~~~ll~~~~~------~~~~~------------   58 (318)
                      |+..|   +.|+|++|+++|++++.+|..|+||||+|+..+  +.|++++|++.++.      +..+.            
T Consensus        48 A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~  127 (672)
T PHA02730         48 YVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLYSYMSSDNI  127 (672)
T ss_pred             HHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHHHHHHhcCC
Confidence            66665   599999999999999999999999999999977  79999999987441      11133            


Q ss_pred             -----------------------------hHHHHHHhCCCHHHHHHHHhCCCCCCC-------CCCCC-chHHHHHH---
Q psy4998          59 -----------------------------PALHIAAKKDDCKAAALLLENDHSPDV-------KSNSH-FTPLHIAA---   98 (318)
Q Consensus        59 -----------------------------~~l~~A~~~~~~~~~~~ll~~~~~~~~-------~~~~~-~~~l~~a~---   98 (318)
                                                   ++++.+...++++++++|+++|++++.       .+... .+.|++++   
T Consensus       128 ~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~  207 (672)
T PHA02730        128 DLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSH  207 (672)
T ss_pred             cHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhh
Confidence                                         344445555555555555555555530       11112 22333232   


Q ss_pred             ---HcCCHHHHHHHHhccCCcccccCCCChHHHH--HHHcCcHHHHHHHHH-----------------------------
Q psy4998          99 ---HYGNTNIAELLIQKHANVNNQAKHNITPLHV--ACKWGKVAMVELLIS-----------------------------  144 (318)
Q Consensus        99 ---~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~--a~~~~~~~~~~~L~~-----------------------------  144 (318)
                         .+++.|++++|+++|++++..+..|.||||+  +...++.|++++|++                             
T Consensus       208 ~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (672)
T PHA02730        208 RESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFR  287 (672)
T ss_pred             hhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhh
Confidence               3345666666666666677677777777764  334455777777777                             


Q ss_pred             ---cCCCCCc--------------------cCCCCCh---------------------HHHHHHHcC---CHHHHHHHHH
Q psy4998         145 ---KGANIEA--------------------KTRDGLT---------------------PLHCAARSG---HDNVIDILIE  177 (318)
Q Consensus       145 ---~~~~~~~--------------------~~~~~~~---------------------~l~~a~~~~---~~~~~~~ll~  177 (318)
                         +|++...                    .+..+..                     .|+.-...+   +.+++++|++
T Consensus       288 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs  367 (672)
T PHA02730        288 VTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLD  367 (672)
T ss_pred             cccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHH
Confidence               4555433                    2222322                     344444434   4677777777


Q ss_pred             cCCCCcCCCCCCCcHhHHHhhcCC----HHHHHHHHHcCC--CCCcCCCCCCCHHHH---HHHcC---------CHhHHH
Q psy4998         178 KGAALYSKTKAGFTPLHIASHFGQ----LNMVRYLVENGA--NVNATTNLGYTPLHQ---ASQQG---------RVLIID  239 (318)
Q Consensus       178 ~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~g~--~~~~~~~~g~t~l~~---A~~~~---------~~~~~~  239 (318)
                      +|++++.. ..|.||||+|+..++    .+++++|+++|+  +++.++..|.||||.   |...+         ..++++
T Consensus       368 ~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk  446 (672)
T PHA02730        368 NGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFD  446 (672)
T ss_pred             CCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHH
Confidence            77777764 678899998887764    899999999987  688888889999984   33222         235689


Q ss_pred             HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccce
Q psy4998         240 LLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETTI  282 (318)
Q Consensus       240 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~  282 (318)
                      +|+++|++++.+|..|.|||++|+..++.+++++|..++++..
T Consensus       447 ~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN  489 (672)
T PHA02730        447 ILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVN  489 (672)
T ss_pred             HHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCC
Confidence            9999999999999999999999999999999999998877643

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.5e-39  Score=282.14  Aligned_cols=272  Identities=17%  Similarity=0.260  Sum_probs=235.6

Q ss_pred             hHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHc--CCHHHHHHHHhcCCC----CCCChhHHHHHHhC-----CCHHHHHH
Q psy4998           7 HDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQ--GHDRVVAVLLENDTK----GKVKLPALHIAAKK-----DDCKAAAL   75 (318)
Q Consensus         7 ~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~--g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~-----~~~~~~~~   75 (318)
                      .++.|+.|++.+. ++.. ..+.|+++.+...  ++.+++++|+++|++    +..|.||||.|+.+     +..+++++
T Consensus        17 ~~~~v~~ll~~~~-~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~   94 (489)
T PHA02798         17 KLSTVKLLIKSCN-PNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKI   94 (489)
T ss_pred             cHHHHHHHHhcCC-hhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHH
Confidence            5789999998754 3333 3466777645444  488999999999876    45788999998864     67899999


Q ss_pred             HHhCCCCCCCCCCCCchHHHHHHHcC---CHHHHHHHHhccCCcccccCCCChHHHHHHHcCc---HHHHHHHHHcCCCC
Q psy4998          76 LLENDHSPDVKSNSHFTPLHIAAHYG---NTNIAELLIQKHANVNNQAKHNITPLHVACKWGK---VAMVELLISKGANI  149 (318)
Q Consensus        76 ll~~~~~~~~~~~~~~~~l~~a~~~~---~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~L~~~~~~~  149 (318)
                      |+++|++++..+..|.||||+|+..+   +.+++++|+++|++++..+..|.||||+|+..++   .+++++|++.|+++
T Consensus        95 Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi  174 (489)
T PHA02798         95 LIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDI  174 (489)
T ss_pred             HHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCc
Confidence            99999999999999999999999875   7899999999999999999999999999999987   99999999999999


Q ss_pred             CccC-CCCChHHHHHHHc----CCHHHHHHHHHcCCCCcCCCCCCCcHhH-------HHhhcCCHHHHHHHHHcCCCCCc
Q psy4998         150 EAKT-RDGLTPLHCAARS----GHDNVIDILIEKGAALYSKTKAGFTPLH-------IASHFGQLNMVRYLVENGANVNA  217 (318)
Q Consensus       150 ~~~~-~~~~~~l~~a~~~----~~~~~~~~ll~~~~~~~~~~~~~~t~l~-------~a~~~~~~~~~~~Ll~~g~~~~~  217 (318)
                      +..+ ..+.||+|.++..    ++.+++++|+++|++++..+..+.++++       .+...++.+++++|+. ++++|.
T Consensus       175 n~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~dvN~  253 (489)
T PHA02798        175 NTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YIDINQ  253 (489)
T ss_pred             ccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-cCCCCC
Confidence            8774 5688999998765    4799999999999999988888888876       2445567888888766 699999


Q ss_pred             CCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccc
Q psy4998         218 TTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETT  281 (318)
Q Consensus       218 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  281 (318)
                      +|..|.||||+|+..|+.+++++|+++|+|++..|..|.||++.|++.++.++++.|.....+.
T Consensus       254 ~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~  317 (489)
T PHA02798        254 VDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNK  317 (489)
T ss_pred             cCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCH
Confidence            9999999999999999999999999999999999999999999999999999999998776543

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.2e-39  Score=283.89  Aligned_cols=279  Identities=17%  Similarity=0.195  Sum_probs=222.2

Q ss_pred             CccccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHH--HcCCHHHHHHHHhcCCCCC-------CC-----------hhH
Q psy4998           1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAM--QQGHDRVVAVLLENDTKGK-------VK-----------LPA   60 (318)
Q Consensus         1 lA~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~--~~g~~~~~~~ll~~~~~~~-------~~-----------~~~   60 (318)
                      +|+..|+.|+|++|+++|++++..+..|.||||.|+  ..|+.+++++|+++|++..       .|           .||
T Consensus       109 ~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~  188 (661)
T PHA02917        109 MKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTV  188 (661)
T ss_pred             HHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccH
Confidence            478899999999999999999999999999999654  5789999999999987632       22           499


Q ss_pred             HHHHHh-----------CCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCH--HHHHHHHhccCCcc----cccCCC
Q psy4998          61 LHIAAK-----------KDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNT--NIAELLIQKHANVN----NQAKHN  123 (318)
Q Consensus        61 l~~A~~-----------~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~--~~~~~ll~~~~~~~----~~~~~~  123 (318)
                      ||+|+.           .++.+++++|+++|++++..+..|.||||+|+..|+.  +++++|++ |++.+    ..+..+
T Consensus       189 L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~  267 (661)
T PHA02917        189 LHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTC  267 (661)
T ss_pred             HHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCccc
Confidence            999986           4689999999999999999999999999999999985  79999975 76554    234456


Q ss_pred             ChHHHHHHHc---------CcHHHHHHHHHcCCCCCc-------cCC------------CCChHHHH---HHHcCC--HH
Q psy4998         124 ITPLHVACKW---------GKVAMVELLISKGANIEA-------KTR------------DGLTPLHC---AARSGH--DN  170 (318)
Q Consensus       124 ~~~l~~a~~~---------~~~~~~~~L~~~~~~~~~-------~~~------------~~~~~l~~---a~~~~~--~~  170 (318)
                      .+++++|+.-         .+.+++++|++.|++...       ...            .+.++++.   ++..|.  .+
T Consensus       268 ~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~  347 (661)
T PHA02917        268 CTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIP  347 (661)
T ss_pred             ccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHH
Confidence            6667777631         166788888888765321       111            11222222   223444  45


Q ss_pred             HHHHHHHcCCCC------------------------------cCCCCCCCcHhHHHhhcC--------------------
Q psy4998         171 VIDILIEKGAAL------------------------------YSKTKAGFTPLHIASHFG--------------------  200 (318)
Q Consensus       171 ~~~~ll~~~~~~------------------------------~~~~~~~~t~l~~a~~~~--------------------  200 (318)
                      ++++|+++|+++                              +..+..|.||||.|++.+                    
T Consensus       348 ~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~  427 (661)
T PHA02917        348 LVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSY  427 (661)
T ss_pred             HHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhh
Confidence            777777776653                              333445999999987533                    


Q ss_pred             ---CHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHH-cCCHHHHHHhhh
Q psy4998         201 ---QLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQK-LGYISVIETLKI  276 (318)
Q Consensus       201 ---~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~-~~~~~~~~~l~~  276 (318)
                         ..+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++..+..|.||+++|+. .++.+++++|..
T Consensus       428 ~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~~~~~~~iv~~LL~  507 (661)
T PHA02917        428 ACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKMLLC  507 (661)
T ss_pred             hhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Confidence               3567899999999999999999999999999999999999999999999999999999999996 689999999998


Q ss_pred             cccc
Q psy4998         277 VTET  280 (318)
Q Consensus       277 ~~~~  280 (318)
                      ....
T Consensus       508 ~ga~  511 (661)
T PHA02917        508 HKPT  511 (661)
T ss_pred             cCCC
Confidence            8764

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.5e-39  Score=275.01  Aligned_cols=225  Identities=25%  Similarity=0.336  Sum_probs=213.2

Q ss_pred             ChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcH
Q psy4998          57 KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKV  136 (318)
Q Consensus        57 ~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~  136 (318)
                      ..++|+.|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++..+..+.+|||.|+..|+.
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~   81 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDV   81 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence            45799999999999999999999999999999999999999999999999999999999988888899999999999999


Q ss_pred             HHHHHHHHcCCCCC-ccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCC
Q psy4998         137 AMVELLISKGANIE-AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANV  215 (318)
Q Consensus       137 ~~~~~L~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~  215 (318)
                      +++++|++.|.... ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..|+.+++++|+++|+++
T Consensus        82 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~  161 (413)
T PHA02875         82 KAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACL  161 (413)
T ss_pred             HHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC
Confidence            99999999987654 44667999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHhhhccccc
Q psy4998         216 NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQ-TALNIAQKLGYISVIETLKIVTETT  281 (318)
Q Consensus       216 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~~~~l~~~~~~~  281 (318)
                      +.++..|.||||+|+..|+.+++++|+++|++++..+..|. ||+++|+..|+.+++++|...+.+.
T Consensus       162 ~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~  228 (413)
T PHA02875        162 DIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADC  228 (413)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCc
Confidence            99999999999999999999999999999999999888874 7999999999999999999988764

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=2e-38  Score=280.61  Aligned_cols=279  Identities=21%  Similarity=0.226  Sum_probs=222.5

Q ss_pred             ccccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHH----HHHHHHhcCC--CCCCChhHHHHHHhCCCHHHHHH
Q psy4998           2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDR----VVAVLLENDT--KGKVKLPALHIAAKKDDCKAAAL   75 (318)
Q Consensus         2 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~----~~~~ll~~~~--~~~~~~~~l~~A~~~~~~~~~~~   75 (318)
                      |+..|+.++|++|++.|++++..+..|.||||.|+.+|+.+    +++.|++.+.  +.....++++.|+.+++.+++++
T Consensus        42 ~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~  121 (661)
T PHA02917         42 NEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKV  121 (661)
T ss_pred             hhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHH
Confidence            35568999999999999999999999999999999999955    5577876532  22223367788999999999999


Q ss_pred             HHhCCCCCCCCCCCCchHHHHHH--HcCCHHHHHHHHhccCCcccccC---CC-----------ChHHHHHHH-------
Q psy4998          76 LLENDHSPDVKSNSHFTPLHIAA--HYGNTNIAELLIQKHANVNNQAK---HN-----------ITPLHVACK-------  132 (318)
Q Consensus        76 ll~~~~~~~~~~~~~~~~l~~a~--~~~~~~~~~~ll~~~~~~~~~~~---~~-----------~~~l~~a~~-------  132 (318)
                      |+++|++++..+..|.|||+.++  ..|+.+++++|+++|++++..+.   .|           .||||+|+.       
T Consensus       122 Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~  201 (661)
T PHA02917        122 LVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSES  201 (661)
T ss_pred             HHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccc
Confidence            99999999999999999999654  46899999999999999875442   23           599999976       


Q ss_pred             ----cCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCH--HHHHHHHHcCCCCcC----CCCCCCcHhHHH------
Q psy4998         133 ----WGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHD--NVIDILIEKGAALYS----KTKAGFTPLHIA------  196 (318)
Q Consensus       133 ----~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~--~~~~~ll~~~~~~~~----~~~~~~t~l~~a------  196 (318)
                          .++.+++++|+++|++++..+..|.||||+|+..|+.  +++++|++ |++.+.    .+..+.+|+++|      
T Consensus       202 ~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~  280 (661)
T PHA02917        202 DTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSD  280 (661)
T ss_pred             cccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhh
Confidence                4689999999999999999999999999999999874  78888874 554321    111222222222      


Q ss_pred             ----------------------------------------------------------hhcCC--HHHHHHHHHcCCCCC
Q psy4998         197 ----------------------------------------------------------SHFGQ--LNMVRYLVENGANVN  216 (318)
Q Consensus       197 ----------------------------------------------------------~~~~~--~~~~~~Ll~~g~~~~  216 (318)
                                                                                +..|.  .+++++|+++|++++
T Consensus       281 ~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn  360 (661)
T PHA02917        281 YRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVN  360 (661)
T ss_pred             ccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCC
Confidence                                                                      22333  447888888887754


Q ss_pred             cC------------------------------CCCCCCHHHHHHHcCC-----------------------HhHHHHHHh
Q psy4998         217 AT------------------------------TNLGYTPLHQASQQGR-----------------------VLIIDLLLG  243 (318)
Q Consensus       217 ~~------------------------------~~~g~t~l~~A~~~~~-----------------------~~~~~~Ll~  243 (318)
                      .+                              +..|.||||.|++.+.                       .+++++|++
T Consensus       361 ~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~  440 (661)
T PHA02917        361 KEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLP  440 (661)
T ss_pred             CCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHH
Confidence            33                              3458899999875432                       567899999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccc
Q psy4998         244 AGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETT  281 (318)
Q Consensus       244 ~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  281 (318)
                      +|+|++.+|..|.||||+|+..++.+++++|...+.+.
T Consensus       441 ~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdi  478 (661)
T PHA02917        441 YLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDV  478 (661)
T ss_pred             CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCC
Confidence            99999999999999999999999999999999887754

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=9e-39  Score=278.66  Aligned_cols=248  Identities=19%  Similarity=0.313  Sum_probs=223.6

Q ss_pred             ccccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHc-----CCHHHHHHHHhcCCC----CCCChhHHHHHHhCC---C
Q psy4998           2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQ-----GHDRVVAVLLENDTK----GKVKLPALHIAAKKD---D   69 (318)
Q Consensus         2 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~-----g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~---~   69 (318)
                      +...++.++|++|+++|++++..+..|.||||.|+.+     ++.+++++|++.|++    +..|.||||+|+.++   +
T Consensus        45 ~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~  124 (489)
T PHA02798         45 QRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINN  124 (489)
T ss_pred             hCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcCh
Confidence            3456789999999999999999999999999999864     679999999999776    567899999999875   7


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCC---HHHHHHHHhccCCccccc-CCCChHHHHHHHc----CcHHHHHH
Q psy4998          70 CKAAALLLENDHSPDVKSNSHFTPLHIAAHYGN---TNIAELLIQKHANVNNQA-KHNITPLHVACKW----GKVAMVEL  141 (318)
Q Consensus        70 ~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~ll~~~~~~~~~~-~~~~~~l~~a~~~----~~~~~~~~  141 (318)
                      .+++++|+++|++++..+..|.||||+|+..++   .+++++|++.|++++..+ ..|.+|+|.++..    ++.+++++
T Consensus       125 ~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~  204 (489)
T PHA02798        125 LEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKL  204 (489)
T ss_pred             HHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHH
Confidence            899999999999999999999999999999987   999999999999998774 4688999988764    47999999


Q ss_pred             HHHcCCCCCccCCCCChHHH-------HHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCC
Q psy4998         142 LISKGANIEAKTRDGLTPLH-------CAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN  214 (318)
Q Consensus       142 L~~~~~~~~~~~~~~~~~l~-------~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  214 (318)
                      |+++|++++..+..+.++++       .+...+..+++.+|+. +++++.++..|.||||+|+..++.+++++|+++|++
T Consensus       205 Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAd  283 (489)
T PHA02798        205 FVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGD  283 (489)
T ss_pred             HHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            99999999988888888766       2344566788888765 699999999999999999999999999999999999


Q ss_pred             CCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCC
Q psy4998         215 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA  250 (318)
Q Consensus       215 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~  250 (318)
                      ++.++..|.|||++|+..++.++++.|+++|++++.
T Consensus       284 in~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~~  319 (489)
T PHA02798        284 INIITELGNTCLFTAFENESKFIFNSILNKKPNKNT  319 (489)
T ss_pred             ccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHHH
Confidence            999999999999999999999999999999998863

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.8e-38  Score=276.37  Aligned_cols=255  Identities=25%  Similarity=0.300  Sum_probs=219.3

Q ss_pred             CcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHH
Q psy4998          22 TLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIA   97 (318)
Q Consensus        22 ~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a   97 (318)
                      +..+..+.||||.|+..|+.+++++|++.+++    +..|.||||+|+..|+.++++.|++.+.....  ..+.++++.|
T Consensus        31 ~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~l~~a  108 (477)
T PHA02878         31 TSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV--FYTLVAIKDA  108 (477)
T ss_pred             CcccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc--ccchhhHHHH
Confidence            33455688999999999999999999999754    56789999999999999999999998765443  4567899999


Q ss_pred             HHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcC--cHHHHHHHHHcCCCCCccCCC-CChHHHHHHHcCCHHHHHH
Q psy4998          98 AHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWG--KVAMVELLISKGANIEAKTRD-GLTPLHCAARSGHDNVIDI  174 (318)
Q Consensus        98 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~L~~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~  174 (318)
                      +..++.+++++|+..+.......  ....+......+  ..+++++|++.|++++..+.. |.||||+|+..|+.+++++
T Consensus       109 ~~~~~~ei~~~Ll~~~~~~~~~~--~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~  186 (477)
T PHA02878        109 FNNRNVEIFKIILTNRYKNIQTI--DLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTEL  186 (477)
T ss_pred             HHcCCHHHHHHHHhCcccCcccC--cHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHH
Confidence            99999999999998754322111  111111111222  356999999999999999988 9999999999999999999


Q ss_pred             HHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc-CCHhHHHHHHhCCCCCCCCCC
Q psy4998         175 LIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQ-GRVLIIDLLLGAGAQPNATTN  253 (318)
Q Consensus       175 ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~g~~~~~~~~  253 (318)
                      |+++|++++..+..|.||||.|+..++.+++++|+++|++++.++..|.||||+|+.. ++.+++++|+++|++++.++.
T Consensus       187 Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~  266 (477)
T PHA02878        187 LLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSY  266 (477)
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCC
Confidence            9999999999999999999999999999999999999999999999999999999975 789999999999999999876


Q ss_pred             -CCCCHHHHHHHcCCHHHHHHhhhccccce
Q psy4998         254 -HGQTALNIAQKLGYISVIETLKIVTETTI  282 (318)
Q Consensus       254 -~g~t~l~~A~~~~~~~~~~~l~~~~~~~~  282 (318)
                       .|.||||+|  .++.+++++|...+.+..
T Consensus       267 ~~g~TpLh~A--~~~~~~v~~Ll~~gadin  294 (477)
T PHA02878        267 ILGLTALHSS--IKSERKLKLLLEYGADIN  294 (477)
T ss_pred             CCCCCHHHHH--ccCHHHHHHHHHCCCCCC
Confidence             799999999  578999999999887643

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.8e-38  Score=273.49  Aligned_cols=243  Identities=19%  Similarity=0.326  Sum_probs=216.1

Q ss_pred             ccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcC------CHHHHHHHHhcCCC----CCCChhHHHHHHhC---CCH
Q psy4998           4 QENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQG------HDRVVAVLLENDTK----GKVKLPALHIAAKK---DDC   70 (318)
Q Consensus         4 ~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g------~~~~~~~ll~~~~~----~~~~~~~l~~A~~~---~~~   70 (318)
                      ..++.++|++|+++|++++..+ .+.||||.|+.++      +.+++++|++.|++    +..|.|||+.|+..   ++.
T Consensus        46 ~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~  124 (494)
T PHA02989         46 KDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNC  124 (494)
T ss_pred             CCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcH
Confidence            3458999999999999999876 5689999998754      57899999999865    55688999988765   689


Q ss_pred             HHHHHHHhCCCCC-CCCCCCCchHHHHHHHc--CCHHHHHHHHhccCCccc-ccCCCChHHHHHHHcC----cHHHHHHH
Q psy4998          71 KAAALLLENDHSP-DVKSNSHFTPLHIAAHY--GNTNIAELLIQKHANVNN-QAKHNITPLHVACKWG----KVAMVELL  142 (318)
Q Consensus        71 ~~~~~ll~~~~~~-~~~~~~~~~~l~~a~~~--~~~~~~~~ll~~~~~~~~-~~~~~~~~l~~a~~~~----~~~~~~~L  142 (318)
                      +++++|+++|+++ +..+..|.||||+|+..  ++.+++++|++.|++++. .+..|.||++.|+..+    +.+++++|
T Consensus       125 eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~L  204 (494)
T PHA02989        125 DMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYL  204 (494)
T ss_pred             HHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHH
Confidence            9999999999999 78899999999999865  589999999999999987 5778999999987654    89999999


Q ss_pred             HHcCCCCCccCCCCChHHHHHHHcC------CHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCC
Q psy4998         143 ISKGANIEAKTRDGLTPLHCAARSG------HDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN  216 (318)
Q Consensus       143 ~~~~~~~~~~~~~~~~~l~~a~~~~------~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~  216 (318)
                      ++.|++++..+..+.++++.++..+      ..+++++|+ .+++++.++..|.||||+|+..++.+++++|+++|++++
T Consensus       205 l~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~-~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin  283 (494)
T PHA02989        205 IKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFIL-KYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIY  283 (494)
T ss_pred             HhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHH-hCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCcc
Confidence            9999999999988999999876543      467788766 469999999999999999999999999999999999999


Q ss_pred             cCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCC
Q psy4998         217 ATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP  248 (318)
Q Consensus       217 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~  248 (318)
                      .++..|.||||+|+..|+.+++++|++.+.+.
T Consensus       284 ~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~~  315 (494)
T PHA02989        284 NVSKDGDTVLTYAIKHGNIDMLNRILQLKPGK  315 (494)
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCh
Confidence            99999999999999999999999999987543

>KOG4412|consensus

Probab=100.00  E-value=2.5e-39  Score=227.23  Aligned_cols=205  Identities=34%  Similarity=0.527  Sum_probs=185.3

Q ss_pred             hHHHHHHhCCCHHHHHHHHhCCC-CCCCCCC-CCchHHHHHHHcCCHHHHHHHH-hccCCcccccCCCChHHHHHHHcCc
Q psy4998          59 PALHIAAKKDDCKAAALLLENDH-SPDVKSN-SHFTPLHIAAHYGNTNIAELLI-QKHANVNNQAKHNITPLHVACKWGK  135 (318)
Q Consensus        59 ~~l~~A~~~~~~~~~~~ll~~~~-~~~~~~~-~~~~~l~~a~~~~~~~~~~~ll-~~~~~~~~~~~~~~~~l~~a~~~~~  135 (318)
                      ++.+.++...-..-++.+++... .++.++. +|+||||+||..|+.+++++|+ +-+..++..|..|.+|||+|+..|+
T Consensus         5 ~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~   84 (226)
T KOG4412|consen    5 SLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGN   84 (226)
T ss_pred             chHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCc
Confidence            44555666666666666666554 4566555 8999999999999999999999 4566788889999999999999999


Q ss_pred             HHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCC
Q psy4998         136 VAMVELLISK-GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN  214 (318)
Q Consensus       136 ~~~~~~L~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  214 (318)
                      .++++.|+.. +++++..+..|.|+||+|+..|+.+++++|+++|+.+..+|..|.||||.|+.-|+++++++|+..|+.
T Consensus        85 ~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~  164 (226)
T KOG4412|consen   85 DEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAP  164 (226)
T ss_pred             HHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCC
Confidence            9999999998 999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Q psy4998         215 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQK  264 (318)
Q Consensus       215 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~  264 (318)
                      +|..|.+|+||||.|...|+.++..+|+++|+++...|+.| ||+..|..
T Consensus       165 ~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  165 LNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             CCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHH
Confidence            99999999999999988999999999999999999999988 99887753

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.2e-37  Score=267.69  Aligned_cols=277  Identities=17%  Similarity=0.195  Sum_probs=230.1

Q ss_pred             cccChHHHHHHHHh-cCCCCCcCCC-----CCCCHHHHHHHcCCHHHHHHHHhcCCCCC------C------ChhHHHHH
Q psy4998           3 AQENHDGVVRYLLS-KGGNQTLATE-----DGFTPLAVAMQQGHDRVVAVLLENDTKGK------V------KLPALHIA   64 (318)
Q Consensus         3 ~~~g~~~~v~~Ll~-~g~~~~~~~~-----~~~t~l~~A~~~g~~~~~~~ll~~~~~~~------~------~~~~l~~A   64 (318)
                      +..++.|+|++|++ .+++++....     .|.+|+++|...++.++|++|+++|+...      .      ..|.|+++
T Consensus       124 s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~  203 (672)
T PHA02730        124 SDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYY  203 (672)
T ss_pred             hcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHH
Confidence            45889999999996 6678776633     78899999999999999999999987752      1      12445533


Q ss_pred             ------HhCCCHHHHHHHHhCCCCCCCCCCCCchHHHH--HHHcCCHHHHHHHHh-------------------------
Q psy4998          65 ------AKKDDCKAAALLLENDHSPDVKSNSHFTPLHI--AAHYGNTNIAELLIQ-------------------------  111 (318)
Q Consensus        65 ------~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~--a~~~~~~~~~~~ll~-------------------------  111 (318)
                            ..+++.++++.|+++|++++.++..|.||||+  +...++.|++++|++                         
T Consensus       204 il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (672)
T PHA02730        204 ILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLN  283 (672)
T ss_pred             HHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhh
Confidence                  45679999999999999999999999999996  445567999999999                         


Q ss_pred             -------ccCCccc--------------------ccCCCCh---------------------HHHHHHHcC---cHHHHH
Q psy4998         112 -------KHANVNN--------------------QAKHNIT---------------------PLHVACKWG---KVAMVE  140 (318)
Q Consensus       112 -------~~~~~~~--------------------~~~~~~~---------------------~l~~a~~~~---~~~~~~  140 (318)
                             +|++...                    .+..|.+                     .|+.-...+   +.++++
T Consensus       284 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIve  363 (672)
T PHA02730        284 KRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILR  363 (672)
T ss_pred             hhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHH
Confidence                   5666533                    2333433                     455555544   699999


Q ss_pred             HHHHcCCCCCccCCCCChHHHHHHHcCC----HHHHHHHHHcCC--CCcCCCCCCCcHhHH---HhhcC---------CH
Q psy4998         141 LLISKGANIEAKTRDGLTPLHCAARSGH----DNVIDILIEKGA--ALYSKTKAGFTPLHI---ASHFG---------QL  202 (318)
Q Consensus       141 ~L~~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~ll~~~~--~~~~~~~~~~t~l~~---a~~~~---------~~  202 (318)
                      +|+++|++++.. ..|.||||+|+..++    .+++++|+++|+  +++..+..|.||||.   +...+         ..
T Consensus       364 lLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~  442 (672)
T PHA02730        364 CMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILI  442 (672)
T ss_pred             HHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHH
Confidence            999999999975 789999999988875    899999999997  688889999999984   33222         23


Q ss_pred             HHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCC-CCCCHHHHHHHc--CCHHHHHHhhhccc
Q psy4998         203 NMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN-HGQTALNIAQKL--GYISVIETLKIVTE  279 (318)
Q Consensus       203 ~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~l~~A~~~--~~~~~~~~l~~~~~  279 (318)
                      +++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++++..+. .|.||+++|+..  ++.+++++|.+.++
T Consensus       443 ~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga  522 (672)
T PHA02730        443 DVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHP  522 (672)
T ss_pred             HHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCC
Confidence            579999999999999999999999999999999999999999999999997 599999999874  78999999998887


Q ss_pred             c
Q psy4998         280 T  280 (318)
Q Consensus       280 ~  280 (318)
                      .
T Consensus       523 ~  523 (672)
T PHA02730        523 T  523 (672)
T ss_pred             C
Confidence            5

>KOG4177|consensus

Probab=100.00  E-value=9.5e-40  Score=292.90  Aligned_cols=307  Identities=40%  Similarity=0.645  Sum_probs=223.5

Q ss_pred             ccccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHHH
Q psy4998           2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALLL   77 (318)
Q Consensus         2 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~ll   77 (318)
                      |.+.|..+++++++..|+.++..+..|.+|+|+++..++.++..++...+..    ...+.++++.|+..|..+.++.++
T Consensus       315 a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll  394 (1143)
T KOG4177|consen  315 ASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLL  394 (1143)
T ss_pred             hcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhh
Confidence            4556667777777777777777777777777777777777666666654332    334556666666666666666666


Q ss_pred             hCCCCCCCCCCC---------------------------------CchHHHHHHHcC-CHHHHHHHHhccCCcccccCCC
Q psy4998          78 ENDHSPDVKSNS---------------------------------HFTPLHIAAHYG-NTNIAELLIQKHANVNNQAKHN  123 (318)
Q Consensus        78 ~~~~~~~~~~~~---------------------------------~~~~l~~a~~~~-~~~~~~~ll~~~~~~~~~~~~~  123 (318)
                      ..|.+++.....                                 |.||+|.|+..| ..+....+++++.+++.....|
T Consensus       395 ~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G  474 (1143)
T KOG4177|consen  395 EAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQG  474 (1143)
T ss_pred             hccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhcccc
Confidence            665555555444                                 455555555555 4445555555555555555555


Q ss_pred             ChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHH
Q psy4998         124 ITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLN  203 (318)
Q Consensus       124 ~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  203 (318)
                      .||||.|...|+.++++.+++.++..+.....+.+++|.+...+....++.++++|+.++.+...|.||||.|+.+|++.
T Consensus       475 ~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~  554 (1143)
T KOG4177|consen  475 FTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVD  554 (1143)
T ss_pred             CcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCch
Confidence            55555555555555555555555444444555555666666666666666666677777888889999999999999999


Q ss_pred             HHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcccccee
Q psy4998         204 MVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETTIV  283 (318)
Q Consensus       204 ~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~  283 (318)
                      +|++|+++|++++.+++.|+||||.|+..|..+++.+|+++|++++..+..|.||+++|++.|+.++++.++......  
T Consensus       555 ~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~--  632 (1143)
T KOG4177|consen  555 LVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATP--  632 (1143)
T ss_pred             HHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCcc--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999988875  


Q ss_pred             ccchhhhccccccccccccceeeeeccc
Q psy4998         284 TTTVTTIEEKYRVVAPEAMQEVYMSDSE  311 (318)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (318)
                       .......+......|+++.+-+..+++
T Consensus       633 -~~~~~~~e~~~g~~p~~v~e~~~~~~~  659 (1143)
T KOG4177|consen  633 -AATDPVKENRKGAVPEDVAEELDTDRQ  659 (1143)
T ss_pred             -ccccchhhhhcccChhhHHHHhhhhhh
Confidence             444456677777788888877666655

>KOG0508|consensus

Probab=100.00  E-value=8.1e-38  Score=250.54  Aligned_cols=176  Identities=31%  Similarity=0.483  Sum_probs=157.2

Q ss_pred             CccccChHHHHHHHHhc-CCCCCc--------CCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhC
Q psy4998           1 MAAQENHDGVVRYLLSK-GGNQTL--------ATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKK   67 (318)
Q Consensus         1 lA~~~g~~~~v~~Ll~~-g~~~~~--------~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~   67 (318)
                      +||++||.++|+||+++ ++++..        ....|.+||..|+..||+++|+.|+++++.    .....|||..||..
T Consensus        48 iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfD  127 (615)
T KOG0508|consen   48 IAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFD  127 (615)
T ss_pred             eehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhc
Confidence            48999999999999994 555543        234577899999999999999999999865    22235899999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCC
Q psy4998          68 DDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGA  147 (318)
Q Consensus        68 ~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~  147 (318)
                      |+.+++++|+++|++++..+..|.|+|++||..|+.+++++|++.|++++.++..|.|+||.|+..|+.+++++|+.+|+
T Consensus       128 G~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga  207 (615)
T KOG0508|consen  128 GHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGA  207 (615)
T ss_pred             chhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCccCCCCChHHHHHHHcCCHHHHHHHHH
Q psy4998         148 NIEAKTRDGLTPLHCAARSGHDNVIDILIE  177 (318)
Q Consensus       148 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~  177 (318)
                      .+. .+..|-|||..|...|..++++.|++
T Consensus       208 ~i~-~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  208 KID-VDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             eee-ecCCCCchHHHHhhhcchHHHHHHhc
Confidence            875 56669999999999999999999984

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.6e-37  Score=263.56  Aligned_cols=278  Identities=14%  Similarity=0.164  Sum_probs=229.4

Q ss_pred             CccccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHH-cCCHHHHHHHHhcCCC--------------------------
Q psy4998           1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQ-QGHDRVVAVLLENDTK--------------------------   53 (318)
Q Consensus         1 lA~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~-~g~~~~~~~ll~~~~~--------------------------   53 (318)
                      +|+..|++|+|++|+++|++++..+..+.+|+++|+. .++.|++++|+++|++                          
T Consensus        78 ~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~  157 (631)
T PHA02792         78 LCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDD  157 (631)
T ss_pred             HHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhh
Confidence            4788999999999999999999999999999999966 6999999999998753                          


Q ss_pred             --------------CCCChhHHHHHHhCC-------CHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcC--CHHHHHHHH
Q psy4998          54 --------------GKVKLPALHIAAKKD-------DCKAAALLLENDHSPDVKSNSHFTPLHIAAHYG--NTNIAELLI  110 (318)
Q Consensus        54 --------------~~~~~~~l~~A~~~~-------~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll  110 (318)
                                    +..|.||||+|+.++       +.++++.|+++|++++..+..|.||||+|+.+.  +.|+++.|+
T Consensus       158 ~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~  237 (631)
T PHA02792        158 ELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALF  237 (631)
T ss_pred             hccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHH
Confidence                          223678999999999       899999999999999999999999999999999  889999998


Q ss_pred             hccCCccc-------------------ccC-------CCC------------------------------hHHHHHHHcC
Q psy4998         111 QKHANVNN-------------------QAK-------HNI------------------------------TPLHVACKWG  134 (318)
Q Consensus       111 ~~~~~~~~-------------------~~~-------~~~------------------------------~~l~~a~~~~  134 (318)
                      +.......                   .|.       .|.                              ..|+.-...+
T Consensus       238 ~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~  317 (631)
T PHA02792        238 DSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYH  317 (631)
T ss_pred             hccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcC
Confidence            74221000                   000       000                              0123333334


Q ss_pred             --cHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCC--CcHhHHHhhcCCH---HHHHH
Q psy4998         135 --KVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG--FTPLHIASHFGQL---NMVRY  207 (318)
Q Consensus       135 --~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~--~t~l~~a~~~~~~---~~~~~  207 (318)
                        +.+++++|++.|++...  .....+++.|+..++.+++++|+++|++++.++..|  .||||.|+.....   +++++
T Consensus       318 ~v~ieiIK~LId~Ga~~~r--~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~Ilkl  395 (631)
T PHA02792        318 TVYINVIKCMIDEGATLYR--FKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKL  395 (631)
T ss_pred             CccHHHHHHHHHCCCcccc--CCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHH
Confidence              58899999999998742  224567889999999999999999999999888775  6999988776654   46899


Q ss_pred             HHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHH---cC-------CHHHHHHhhhc
Q psy4998         208 LVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQK---LG-------YISVIETLKIV  277 (318)
Q Consensus       208 Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~---~~-------~~~~~~~l~~~  277 (318)
                      |+++|++++.+|..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+.   .+       ..+++++|.+.
T Consensus       396 LIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~  475 (631)
T PHA02792        396 CKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSK  475 (631)
T ss_pred             HHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999976   22       25567777776


Q ss_pred             ccc
Q psy4998         278 TET  280 (318)
Q Consensus       278 ~~~  280 (318)
                      ...
T Consensus       476 ~p~  478 (631)
T PHA02792        476 LPT  478 (631)
T ss_pred             CCC
Confidence            644

>KOG4412|consensus

Probab=100.00  E-value=1.2e-36  Score=213.91  Aligned_cols=203  Identities=33%  Similarity=0.455  Sum_probs=177.7

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCC------CCCCChhHHHHHHhCCCHHHHHHHHh-CCCCCCCCCCCCchHHHHHHHc
Q psy4998          28 GFTPLAVAMQQGHDRVVAVLLENDT------KGKVKLPALHIAAKKDDCKAAALLLE-NDHSPDVKSNSHFTPLHIAAHY  100 (318)
Q Consensus        28 ~~t~l~~A~~~g~~~~~~~ll~~~~------~~~~~~~~l~~A~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~l~~a~~~  100 (318)
                      +.++.+.+|...-..-++.++++.+      .+..+.||||+||..|+.+++.+|++ .+..++..|..|+||||.|+..
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~   82 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN   82 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc
Confidence            3456677777776777777777654      24477889999999999999998885 4566778888999999999999


Q ss_pred             CCHHHHHHHHhc-cCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcC
Q psy4998         101 GNTNIAELLIQK-HANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG  179 (318)
Q Consensus       101 ~~~~~~~~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~  179 (318)
                      |+.++++.|+.. +++++..+..|.|+||+|+..|+.++.++|++.|+.++.+|..+.||||-|+.-|+.+++++|+..|
T Consensus        83 g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~  162 (226)
T KOG4412|consen   83 GNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQG  162 (226)
T ss_pred             CcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcC
Confidence            999999999988 8999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Q psy4998         180 AALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQ  231 (318)
Q Consensus       180 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~  231 (318)
                      +.+|..|..|+||||.|..-++.+....|+++|+++...|+.| ||+..|+-
T Consensus       163 a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  163 APLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             CCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHH
Confidence            9999999999999999988889999999999999999999987 99877653

>KOG0508|consensus

Probab=100.00  E-value=8.7e-36  Score=238.96  Aligned_cols=207  Identities=30%  Similarity=0.451  Sum_probs=185.4

Q ss_pred             ccccChHHHHHHHHhcCCC-----CCcCCCCCCCHHHHHHHcCCHHHHHHHHhc-------------CCCCCCChhHHHH
Q psy4998           2 AAQENHDGVVRYLLSKGGN-----QTLATEDGFTPLAVAMQQGHDRVVAVLLEN-------------DTKGKVKLPALHI   63 (318)
Q Consensus         2 A~~~g~~~~v~~Ll~~g~~-----~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~-------------~~~~~~~~~~l~~   63 (318)
                      |++.|.+..++.|+-+..+     .-....+|.|||-.|+++||.++|++|+++             +.....|-+||..
T Consensus        11 aa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWa   90 (615)
T KOG0508|consen   11 AARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWA   90 (615)
T ss_pred             HhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhH
Confidence            6778888888888766432     222455688999999999999999999995             2224556789999


Q ss_pred             HHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHH
Q psy4998          64 AAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI  143 (318)
Q Consensus        64 A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~  143 (318)
                      |+..||.++++.|+++|+++|.......|||..||.-|+.+++++|+++|++++..+..|.|.|++|+..|+.+++++|+
T Consensus        91 AsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLl  170 (615)
T KOG0508|consen   91 ASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLL  170 (615)
T ss_pred             HhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHH
Confidence            99999999999999999999999888899999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHH
Q psy4998         144 SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLV  209 (318)
Q Consensus       144 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  209 (318)
                      +.|++++.++..|+|+||.|+..|+.+++++|+.+|+.+. ++..|.|||..|+..|..+++++|+
T Consensus       171 e~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~-~d~~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  171 EQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID-VDGHGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             HhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceee-ecCCCCchHHHHhhhcchHHHHHHh
Confidence            9999999999999999999999999999999999998775 4555999999999999988888887

>KOG4177|consensus

Probab=100.00  E-value=2e-36  Score=271.61  Aligned_cols=284  Identities=36%  Similarity=0.550  Sum_probs=229.8

Q ss_pred             CccccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHH
Q psy4998           1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALL   76 (318)
Q Consensus         1 lA~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~l   76 (318)
                      +||+.+..|++++|++.|+++...+....||+|.|...|..++++.++..+..    ...+.+++|.++..++.++...+
T Consensus       281 ~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l  360 (1143)
T KOG4177|consen  281 MAARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGAL  360 (1143)
T ss_pred             hhhccchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHh
Confidence            58999999999999999999999999999999999999999999999998654    55678999999999999999999


Q ss_pred             HhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCC
Q psy4998          77 LENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG  156 (318)
Q Consensus        77 l~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~  156 (318)
                      ...+..-......+.+|++.|+.++..++++.++..|.+++.....|.||+|.++..++.++++.+++.+.+.+..+..|
T Consensus       361 ~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG  440 (1143)
T KOG4177|consen  361 LEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLG  440 (1143)
T ss_pred             hccccccCcccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcC
Confidence            99988888889999999999999999999999999998877666666666666666666555555555555555555555


Q ss_pred             ChHHHHHHHcC-CHHHHHHHHHcCCCCcCCCCCCCcH---------------------------------hHHHhhcCCH
Q psy4998         157 LTPLHCAARSG-HDNVIDILIEKGAALYSKTKAGFTP---------------------------------LHIASHFGQL  202 (318)
Q Consensus       157 ~~~l~~a~~~~-~~~~~~~ll~~~~~~~~~~~~~~t~---------------------------------l~~a~~~~~~  202 (318)
                      .|++|.|+..| ..+....+++.+.+++.....|.||                                 +|.+...+..
T Consensus       441 ~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v  520 (1143)
T KOG4177|consen  441 YTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTV  520 (1143)
T ss_pred             CChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhH
Confidence            55555555555 4444445555555555444445555                                 4455555555


Q ss_pred             HHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccce
Q psy4998         203 NMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETTI  282 (318)
Q Consensus       203 ~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~  282 (318)
                      .+++.++++|++++.++.+|.||||.|+.+|+.++|++|+++|+|++.+++.|+||||.|+..|+.+++++|.+.+.++-
T Consensus       521 ~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vn  600 (1143)
T KOG4177|consen  521 KVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVN  600 (1143)
T ss_pred             HHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCC
Confidence            55666666677788889999999999999999999999999999999999999999999999999999999999988754


Q ss_pred             ec
Q psy4998         283 VT  284 (318)
Q Consensus       283 ~~  284 (318)
                      ..
T Consensus       601 a~  602 (1143)
T KOG4177|consen  601 AA  602 (1143)
T ss_pred             cc
Confidence            43

>KOG0509|consensus

Probab=100.00  E-value=7.2e-35  Score=242.66  Aligned_cols=209  Identities=34%  Similarity=0.468  Sum_probs=200.0

Q ss_pred             ChhHHHHHHhCCCHHHHHHHHhC-CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCccccc-CCCChHHHHHHHcC
Q psy4998          57 KLPALHIAAKKDDCKAAALLLEN-DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA-KHNITPLHVACKWG  134 (318)
Q Consensus        57 ~~~~l~~A~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~l~~a~~~~  134 (318)
                      ....+..|++.|.++-++.+++. |.+++..|..|.++||+|+.+++.+++++|+++|+++|... .-+.||||+|+++|
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence            35678899999999999999998 99999999999999999999999999999999999999987 56889999999999


Q ss_pred             cHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCC
Q psy4998         135 KVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN  214 (318)
Q Consensus       135 ~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  214 (318)
                      +..++++|+++|++++.+|..|.+++|.|+..++.-++-+++.++++++.+|.+|+||||.|+..+....+..|++-|+.
T Consensus       124 ~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~  203 (600)
T KOG0509|consen  124 HISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGAS  203 (600)
T ss_pred             cHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999998889999999999


Q ss_pred             CCcCC-CCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Q psy4998         215 VNATT-NLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKL  265 (318)
Q Consensus       215 ~~~~~-~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~  265 (318)
                      ++.+| ..|.||||+|+..|+..++++|++.|++.+..|..|+||+.+|.+.
T Consensus       204 ~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  204 LLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            99998 7899999999999999999988888999999999999999999877

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=1e-31  Score=230.28  Aligned_cols=267  Identities=15%  Similarity=0.089  Sum_probs=187.8

Q ss_pred             HHHhcCCCCCcCCCCCCCHHH-HHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHh-CCCHHHHHHHHhCCCCCC--
Q psy4998          13 YLLSKGGNQTLATEDGFTPLA-VAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAK-KDDCKAAALLLENDHSPD--   84 (318)
Q Consensus        13 ~Ll~~g~~~~~~~~~~~t~l~-~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~-~~~~~~~~~ll~~~~~~~--   84 (318)
                      .++.-|..++..+-+|.+++| .|...|++|++++|+++|++    +..+.+++++|+. .++.+++++|+++|+++.  
T Consensus        56 ~~~~~~~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~  135 (631)
T PHA02792         56 VVILLLSSVDYKNINDFDIFEYLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSN  135 (631)
T ss_pred             HHHHHHhCCCcCccCCccHHHHHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccc
Confidence            344444445555556666665 34556777777777777655    2234567777754 577777777777776521  


Q ss_pred             ----------------------------------CCCCCCchHHHHHHHcC-------CHHHHHHHHhccCCcccccCCC
Q psy4998          85 ----------------------------------VKSNSHFTPLHIAAHYG-------NTNIAELLIQKHANVNNQAKHN  123 (318)
Q Consensus        85 ----------------------------------~~~~~~~~~l~~a~~~~-------~~~~~~~ll~~~~~~~~~~~~~  123 (318)
                                                        ..+..|.||||+|+.++       +.++++.|+++|++++..+..|
T Consensus       136 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g  215 (631)
T PHA02792        136 IQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYRE  215 (631)
T ss_pred             cccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCC
Confidence                                              23345777777777777       6777777777777777777777


Q ss_pred             ChHHHHHHHcC--cHHHHHHHHHcCCCCC-------------c------cCC-------CCC------------------
Q psy4998         124 ITPLHVACKWG--KVAMVELLISKGANIE-------------A------KTR-------DGL------------------  157 (318)
Q Consensus       124 ~~~l~~a~~~~--~~~~~~~L~~~~~~~~-------------~------~~~-------~~~------------------  157 (318)
                      .||||+|+...  ..++++.|++...+..             .      .|.       .|.                  
T Consensus       216 ~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~  295 (631)
T PHA02792        216 HTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIII  295 (631)
T ss_pred             ChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHH
Confidence            77777777777  6777777776321100             0      000       000                  


Q ss_pred             ------------hHHHHHHHcC--CHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCC-
Q psy4998         158 ------------TPLHCAARSG--HDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG-  222 (318)
Q Consensus       158 ------------~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g-  222 (318)
                                  ..||.-..++  +.+++++|+++|++..  ......+++.|+..++.+++++|+++|++++.++..| 
T Consensus       296 ~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~  373 (631)
T PHA02792        296 SSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY--RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNII  373 (631)
T ss_pred             HHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCC
Confidence                        1233333333  4677777777777654  1224556889999999999999999999999998775 


Q ss_pred             -CCHHHHHHHcCCH---hHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccc
Q psy4998         223 -YTPLHQASQQGRV---LIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETT  281 (318)
Q Consensus       223 -~t~l~~A~~~~~~---~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  281 (318)
                       .||||+|......   +++++|+++|+|++.+|..|.||||+|+..++.+++++|...+...
T Consensus       374 ~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADI  436 (631)
T PHA02792        374 NIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADI  436 (631)
T ss_pred             ChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCC
Confidence             6999998877664   4689999999999999999999999999999999999999987653

>KOG0509|consensus

Probab=100.00  E-value=1.2e-32  Score=229.40  Aligned_cols=198  Identities=29%  Similarity=0.409  Sum_probs=141.5

Q ss_pred             ccccChHHHHHHHHhc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-----CCCChhHHHHHHhCCCHHHHHH
Q psy4998           2 AAQENHDGVVRYLLSK-GGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK-----GKVKLPALHIAAKKDDCKAAAL   75 (318)
Q Consensus         2 A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~-----~~~~~~~l~~A~~~~~~~~~~~   75 (318)
                      |++.|.++-|+.|++. |.+++..|.+|.|+||.|+.+++++++++|+++++.     ...+.||||+|+++|++.+++.
T Consensus        51 A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~l  130 (600)
T KOG0509|consen   51 ATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDL  130 (600)
T ss_pred             HhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHH
Confidence            6677777777777776 777777777777777777777777777777777554     2344577777777777777777


Q ss_pred             HHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccC-C
Q psy4998          76 LLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKT-R  154 (318)
Q Consensus        76 ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~-~  154 (318)
                      |+++|++++.+|..|.+|+|.|+..++.-++-+++..+.+++.+|..|+|||++|+..|....+..|+..++.+...| .
T Consensus       131 LlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~  210 (600)
T KOG0509|consen  131 LLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDN  210 (600)
T ss_pred             HHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccc
Confidence            777777777777777777777777777777777777777777777777777777777776666777777777666665 6


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhc
Q psy4998         155 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHF  199 (318)
Q Consensus       155 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~  199 (318)
                      .|.||||+|+..|+...+.++++.|++.+..+.+|.||+.+|...
T Consensus       211 ~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  211 HGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            677777777777777777755566666666677777777766544

>PHA02859 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.3e-31  Score=205.37  Aligned_cols=176  Identities=20%  Similarity=0.268  Sum_probs=150.6

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcC--cHHHHHHHHHcCCCCCccC-CCCChHHHHHH
Q psy4998          88 NSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWG--KVAMVELLISKGANIEAKT-RDGLTPLHCAA  164 (318)
Q Consensus        88 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~L~~~~~~~~~~~-~~~~~~l~~a~  164 (318)
                      ..+.+||+.|+..++.++++.|++.   .+..+..|.||||+|+..+  +.+++++|++.|++++.++ ..|.||||+|+
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~   95 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYL   95 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHH
Confidence            4456888888888888888888875   3445677889999888754  7899999999999888876 47889999877


Q ss_pred             Hc---CCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhh--cCCHHHHHHHHHcCCCCCcCCCCCCCHHHH-HHHcCCHhHH
Q psy4998         165 RS---GHDNVIDILIEKGAALYSKTKAGFTPLHIASH--FGQLNMVRYLVENGANVNATTNLGYTPLHQ-ASQQGRVLII  238 (318)
Q Consensus       165 ~~---~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~-A~~~~~~~~~  238 (318)
                      ..   ++.+++++|+++|++++.++..|.||||.|+.  .++.+++++|+++|++++.+|..|.||||. |+..++.+++
T Consensus        96 ~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv  175 (209)
T PHA02859         96 SFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIF  175 (209)
T ss_pred             HhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHH
Confidence            54   46899999999999999999999999998875  468999999999999999999999999996 5677899999


Q ss_pred             HHHHhCCCCCCCCCCCCCCHHHHHHHcC
Q psy4998         239 DLLLGAGAQPNATTNHGQTALNIAQKLG  266 (318)
Q Consensus       239 ~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  266 (318)
                      ++|+++|++++.+|..|.||+++|..++
T Consensus       176 ~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        176 DFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            9999999999999999999999998653

>PHA02795 ankyrin-like protein; Provisional

Probab=100.00  E-value=2e-31  Score=220.57  Aligned_cols=186  Identities=21%  Similarity=0.201  Sum_probs=96.2

Q ss_pred             HHHhCCCHHHHHHHHhCCCCCC------CCCCCCchHHHHHHH--cCCHHHHHHHHhccCCcccccCCCChHHHHHHHcC
Q psy4998          63 IAAKKDDCKAAALLLENDHSPD------VKSNSHFTPLHIAAH--YGNTNIAELLIQKHANVNNQAKHNITPLHVACKWG  134 (318)
Q Consensus        63 ~A~~~~~~~~~~~ll~~~~~~~------~~~~~~~~~l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~  134 (318)
                      +|+..+..++++.|+++|++++      ..+..++|+||.++.  .|+.+++++|+++|++++..  .+.||+|.|+..+
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~  160 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKK  160 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcC
Confidence            4444444444444444444444      333444555555554  44555555555555555432  2244555555555


Q ss_pred             cHHHHHHHHHcCCCCCccC------CCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHH
Q psy4998         135 KVAMVELLISKGANIEAKT------RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL  208 (318)
Q Consensus       135 ~~~~~~~L~~~~~~~~~~~------~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  208 (318)
                      +.+++++|+++|++.....      ..+.+++|.+...+..+++++|+++|++++.++..|.||||+|+..|+.+++++|
T Consensus       161 ~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelL  240 (437)
T PHA02795        161 ESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWL  240 (437)
T ss_pred             cHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            5555555555554221111      1234455555555555555555555555555555555555555555555555555


Q ss_pred             HHcCCCCCcCCCCCCCHHHHHHHcCC--------HhHHHHHHhCCCCCCC
Q psy4998         209 VENGANVNATTNLGYTPLHQASQQGR--------VLIIDLLLGAGAQPNA  250 (318)
Q Consensus       209 l~~g~~~~~~~~~g~t~l~~A~~~~~--------~~~~~~Ll~~g~~~~~  250 (318)
                      +++|++++.++..|.||||+|+..|+        .+++++|+++|++++.
T Consensus       241 L~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~  290 (437)
T PHA02795        241 LENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDC  290 (437)
T ss_pred             HHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCc
Confidence            55555555555555555555555552        3555555555555543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.98  E-value=1e-30  Score=216.43  Aligned_cols=202  Identities=17%  Similarity=0.183  Sum_probs=181.7

Q ss_pred             HHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcc------cccCCCChHHHHHHH--cCcHHHHHHHH
Q psy4998          72 AAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN------NQAKHNITPLHVACK--WGKVAMVELLI  143 (318)
Q Consensus        72 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~------~~~~~~~~~l~~a~~--~~~~~~~~~L~  143 (318)
                      ..++++.+|.+++.....+     +|+..+..+++++|+.+|++++      .++..+.|+||.++.  .|+.+++++|+
T Consensus        64 ~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI  138 (437)
T PHA02795         64 LYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMV  138 (437)
T ss_pred             HHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHH
Confidence            4578899999888776665     8999999999999999999987      677789999999999  89999999999


Q ss_pred             HcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCC------CCCCcHhHHHhhcCCHHHHHHHHHcCCCCCc
Q psy4998         144 SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT------KAGFTPLHIASHFGQLNMVRYLVENGANVNA  217 (318)
Q Consensus       144 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~------~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~  217 (318)
                      ++|++++..  .+.||+|.|+..++.+++++|+++|++.....      ..+.+++|.|+..++.+++++|+++|++++.
T Consensus       139 ~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~  216 (437)
T PHA02795        139 DHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQ  216 (437)
T ss_pred             HCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCc
Confidence            999999874  44789999999999999999999998543322      3477899999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC--------HHHHHHhhhcccc
Q psy4998         218 TTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGY--------ISVIETLKIVTET  280 (318)
Q Consensus       218 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~--------~~~~~~l~~~~~~  280 (318)
                      ++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+        .+++++|...+.+
T Consensus       217 kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gad  287 (437)
T PHA02795        217 LDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLS  287 (437)
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999985        6999999876654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=4.9e-30  Score=197.99  Aligned_cols=173  Identities=22%  Similarity=0.297  Sum_probs=139.3

Q ss_pred             hhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcC--CHHHHHHHHhccCCccccc-CCCChHHHHHHHc-
Q psy4998          58 LPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYG--NTNIAELLIQKHANVNNQA-KHNITPLHVACKW-  133 (318)
Q Consensus        58 ~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~-~~~~~~l~~a~~~-  133 (318)
                      .+||+.|+..|+.++++.|++.   .+..+..|.||||+|+..+  +.+++++|++.|++++..+ ..|.||||+|+.. 
T Consensus        22 ~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~   98 (209)
T PHA02859         22 CNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFN   98 (209)
T ss_pred             CcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhC
Confidence            4667777777777777766654   3456677888888888754  7888888888888888775 4688888887653 


Q ss_pred             --CcHHHHHHHHHcCCCCCccCCCCChHHHHHHH--cCCHHHHHHHHHcCCCCcCCCCCCCcHhHH-HhhcCCHHHHHHH
Q psy4998         134 --GKVAMVELLISKGANIEAKTRDGLTPLHCAAR--SGHDNVIDILIEKGAALYSKTKAGFTPLHI-ASHFGQLNMVRYL  208 (318)
Q Consensus       134 --~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~-a~~~~~~~~~~~L  208 (318)
                        ++.+++++|+++|++++.++..|.||||.|+.  .++.+++++|++.|++++.++..|.||||. ++..++.+++++|
T Consensus        99 ~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~L  178 (209)
T PHA02859         99 KNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFL  178 (209)
T ss_pred             ccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHH
Confidence              46888888888888888888888899988875  357899999999999999999999999995 5667889999999


Q ss_pred             HHcCCCCCcCCCCCCCHHHHHHHcC
Q psy4998         209 VENGANVNATTNLGYTPLHQASQQG  233 (318)
Q Consensus       209 l~~g~~~~~~~~~g~t~l~~A~~~~  233 (318)
                      +++|++++.++..|.|||++|...+
T Consensus       179 l~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        179 TSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            9999999999999999999998654

>KOG4369|consensus

Probab=99.96  E-value=8.6e-30  Score=222.94  Aligned_cols=281  Identities=25%  Similarity=0.352  Sum_probs=252.9

Q ss_pred             CccccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCC-----CCCCChhHHHHHHhCCCHHHHHH
Q psy4998           1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDT-----KGKVKLPALHIAAKKDDCKAAAL   75 (318)
Q Consensus         1 lA~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~-----~~~~~~~~l~~A~~~~~~~~~~~   75 (318)
                      +||..||.|+|+.|+.+|+++..+|..|.+||..|+..||..+|+.|+.+..     .+..+.|+|.+||..|..++++.
T Consensus       763 ~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvel  842 (2131)
T KOG4369|consen  763 SACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVEL  842 (2131)
T ss_pred             ccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHH
Confidence            4899999999999999999999999999999999999999999999998733     36677899999999999999999


Q ss_pred             HHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCccccc--CCCChHHHHHHHcCcHHHHHHHHHcCCCCCccC
Q psy4998          76 LLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA--KHNITPLHVACKWGKVAMVELLISKGANIEAKT  153 (318)
Q Consensus        76 ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~  153 (318)
                      |+..|++-..++-..+|||-+|...|..++++.|+..|.+++.+.  .-|.+||++|..+|+.+..+.|++.|.++|..-
T Consensus       843 Ll~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqI  922 (2131)
T KOG4369|consen  843 LLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQI  922 (2131)
T ss_pred             HHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhcccc
Confidence            999999888888888999999999999999999999999888764  458899999999999999999999999988643


Q ss_pred             -CCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCC-----------------
Q psy4998         154 -RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANV-----------------  215 (318)
Q Consensus       154 -~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~-----------------  215 (318)
                       .+.+|+|.+|+..|+.+++.+|+...+.+..+...|-|||+-++..|.+++-.+|+..|+|.                 
T Consensus       923 eTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a 1002 (2131)
T KOG4369|consen  923 ETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPA 1002 (2131)
T ss_pred             ccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeec
Confidence             45678999999999999999999999999899999999999999999998888888888773                 


Q ss_pred             ------------------CcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhc
Q psy4998         216 ------------------NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIV  277 (318)
Q Consensus       216 ------------------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  277 (318)
                                        +.++..|+|+|.+|+-.|....+.+|+++++|++..|....+++..|.+.|++++|++....
T Consensus      1003 ~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~S~~maafRKgh~~iVk~mv~~ 1082 (2131)
T KOG4369|consen 1003 NKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQDNRTNSRTMAAFRKGHFAIVKKMVPP 1082 (2131)
T ss_pred             CCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhcccChhhhhcccccccHHHHHhchhheeccccCc
Confidence                              34466788999999999999999999999999999999999999999999999999988766


Q ss_pred             cccc
Q psy4998         278 TETT  281 (318)
Q Consensus       278 ~~~~  281 (318)
                      ....
T Consensus      1083 atqf 1086 (2131)
T KOG4369|consen 1083 ATQF 1086 (2131)
T ss_pred             hhcC
Confidence            5543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.96  E-value=8.9e-27  Score=214.24  Aligned_cols=198  Identities=22%  Similarity=0.274  Sum_probs=172.7

Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCC
Q psy4998          68 DDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGA  147 (318)
Q Consensus        68 ~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~  147 (318)
                      .+.++-..+.+.+..  ..+..+.++|+.|+..|+.++++.|++.|.+++..+..|.||||.|+..|+.+++++|+++|+
T Consensus       505 ~~l~v~~ll~~~~~~--~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga  582 (823)
T PLN03192        505 HDLNVGDLLGDNGGE--HDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHAC  582 (823)
T ss_pred             ccccHHHHHhhcccc--cCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCC
Confidence            444555555555443  234456789999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHH
Q psy4998         148 NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLH  227 (318)
Q Consensus       148 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~  227 (318)
                      +++.++..|.||||.|+..|+.+++++|++.+...+  ...+.++||.|+..|+.+++++|+++|++++.+|..|.||||
T Consensus       583 din~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh  660 (823)
T PLN03192        583 NVHIRDANGNTALWNAISAKHHKIFRILYHFASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQ  660 (823)
T ss_pred             CCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            999999999999999999999999999998776543  345678999999999999999999999999999999999999


Q ss_pred             HHHHcCCHhHHHHHHhCCCCCCCCCCCC-CCHHHHHHHcCCHH
Q psy4998         228 QASQQGRVLIIDLLLGAGAQPNATTNHG-QTALNIAQKLGYIS  269 (318)
Q Consensus       228 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g-~t~l~~A~~~~~~~  269 (318)
                      +|+..|+.+++++|+++|++++..|..| .+|.+++......+
T Consensus       661 ~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~~~~~  703 (823)
T PLN03192        661 VAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQKRE  703 (823)
T ss_pred             HHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999999999999988 89998886554433

>KOG0502|consensus

Probab=99.95  E-value=2.2e-28  Score=177.77  Aligned_cols=246  Identities=23%  Similarity=0.286  Sum_probs=204.7

Q ss_pred             CHHHHHHHcCCHHHHHHHHhc--CCCCCCChhHHHHHHhCCCHHHHHHHHhCCCC-CCCCCCCCchHHHHHHHcCCHHHH
Q psy4998          30 TPLAVAMQQGHDRVVAVLLEN--DTKGKVKLPALHIAAKKDDCKAAALLLENDHS-PDVKSNSHFTPLHIAAHYGNTNIA  106 (318)
Q Consensus        30 t~l~~A~~~g~~~~~~~ll~~--~~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~  106 (318)
                      ..+..++..|-.+--..+...  ...+..|.+.+-.+...++.+.......-.++ +...+..|.++++.++-.++...+
T Consensus        33 a~~~~~~~m~~t~p~~~l~~~~s~~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~  112 (296)
T KOG0502|consen   33 AELFEQVEMGTTEPRCALTAEISALRNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKV  112 (296)
T ss_pred             HHHHHHhhccccchhHHHHHHHHHHHHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCccee
Confidence            345555555555444444432  11133344555667778888887766554333 555677799999999999999999


Q ss_pred             HHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCC
Q psy4998         107 ELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT  186 (318)
Q Consensus       107 ~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~  186 (318)
                      ...+.++...+..+-.+.+|+.+++...+.+....+.+.  .+|..|+.|.|||.+|+.+|+.+++++|++.|+++....
T Consensus       113 sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lg  190 (296)
T KOG0502|consen  113 STTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALG  190 (296)
T ss_pred             eeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhh
Confidence            999999999998888999999999999988888777765  467889999999999999999999999999999999999


Q ss_pred             CCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Q psy4998         187 KAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLG  266 (318)
Q Consensus       187 ~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  266 (318)
                      +...++|.+|+..|..+++++|+.++.|+|.-|.+|.|||-+|++.++.++++.|++.|+|++..+..|.+++..|+..|
T Consensus       191 k~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValG  270 (296)
T KOG0502|consen  191 KYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALG  270 (296)
T ss_pred             hhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHhhhc
Q psy4998         267 YISVIETLKIV  277 (318)
Q Consensus       267 ~~~~~~~l~~~  277 (318)
                      +..+-+.+.++
T Consensus       271 yr~Vqqvie~h  281 (296)
T KOG0502|consen  271 YRIVQQVIEKH  281 (296)
T ss_pred             hHHHHHHHHHH
Confidence            98443334333

>KOG0502|consensus

Probab=99.95  E-value=1.3e-28  Score=178.97  Aligned_cols=232  Identities=23%  Similarity=0.309  Sum_probs=205.3

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcCCC-----CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHH
Q psy4998          25 TEDGFTPLAVAMQQGHDRVVAVLLENDTK-----GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAH   99 (318)
Q Consensus        25 ~~~~~t~l~~A~~~g~~~~~~~ll~~~~~-----~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   99 (318)
                      +..|.+.+-.+..+|+.+++......++.     +..|+.+++.++-.+++..++..+.++...+..+-.+.+|+.+++.
T Consensus        59 ~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVh  138 (296)
T KOG0502|consen   59 NALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVH  138 (296)
T ss_pred             HhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHH
Confidence            44566777888899999888877765433     4458889999999999999999999999999999999999999998


Q ss_pred             cCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcC
Q psy4998         100 YGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG  179 (318)
Q Consensus       100 ~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~  179 (318)
                      ..+.+.+..+.+  ..++..|..|.|||.+|+..|+++++++|++.|+++....+...++|..|++.|..+++++|+.++
T Consensus       139 ql~L~~~~~~~~--n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~  216 (296)
T KOG0502|consen  139 QLHLDVVDLLVN--NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTRE  216 (296)
T ss_pred             HHHHHHHHHHhh--ccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcC
Confidence            887777665554  466788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHH
Q psy4998         180 AALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTAL  259 (318)
Q Consensus       180 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l  259 (318)
                      .++|.-|-+|-|||.+|++.++.++++.|+..|+++++.+..|.+++..|+..|+. +++-.+++-+.....|..-.+|+
T Consensus       217 vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~  295 (296)
T KOG0502|consen  217 VDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRTPL  295 (296)
T ss_pred             CCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999998 77777887676666666556654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.95  E-value=1.9e-27  Score=217.56  Aligned_cols=229  Identities=22%  Similarity=0.205  Sum_probs=171.9

Q ss_pred             ccccChHHHHHHHHhc--CCCCCcCCCCCCCHHH-HHHHcCCHHHHHHHHhcCCCCCCChhHHHHHHhCC---CHHHHHH
Q psy4998           2 AAQENHDGVVRYLLSK--GGNQTLATEDGFTPLA-VAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKD---DCKAAAL   75 (318)
Q Consensus         2 A~~~g~~~~v~~Ll~~--g~~~~~~~~~~~t~l~-~A~~~g~~~~~~~ll~~~~~~~~~~~~l~~A~~~~---~~~~~~~   75 (318)
                      ||+.|+.+.|+.++++  +.+++..|..|.|||| .|+.+++.++++.|++.+..+..|.|+||.|+..+   ...+++.
T Consensus        24 A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~~~v~~ll~~  103 (743)
T TIGR00870        24 AAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLH  103 (743)
T ss_pred             HHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccHHHHHHHHHH
Confidence            8899999999999999  8899999999999999 89999999999999998877788999999998722   2233444


Q ss_pred             HHhCCCC------CC----CCCCCCchHHHHHHHcCCHHHHHHHHhccCCccccc--------------CCCChHHHHHH
Q psy4998          76 LLENDHS------PD----VKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA--------------KHNITPLHVAC  131 (318)
Q Consensus        76 ll~~~~~------~~----~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~--------------~~~~~~l~~a~  131 (318)
                      +...+..      .+    .....|.||||+|+..|+.+++++|+++|++++.+.              ..|.+||+.|+
T Consensus       104 l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa  183 (743)
T TIGR00870       104 LLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAA  183 (743)
T ss_pred             HhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHH
Confidence            4443321      01    123468899999999999999999999999887543              24778888888


Q ss_pred             HcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcC---------CHHHHHHHHHcCCCC-------cCCCCCCCcHhHH
Q psy4998         132 KWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSG---------HDNVIDILIEKGAAL-------YSKTKAGFTPLHI  195 (318)
Q Consensus       132 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~---------~~~~~~~ll~~~~~~-------~~~~~~~~t~l~~  195 (318)
                      ..|+.+++++|++.|++++..+..|+|+||.|+..+         ...+.+++++.+...       +..|..|.||++.
T Consensus       184 ~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~  263 (743)
T TIGR00870       184 CLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKL  263 (743)
T ss_pred             HhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhh
Confidence            888888888888888888888888888888888776         123445555544333       4457778888888


Q ss_pred             HhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Q psy4998         196 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQAS  230 (318)
Q Consensus       196 a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~  230 (318)
                      |+..|+.+++++|++.+.+.........++.+.+.
T Consensus       264 A~~~g~~~l~~lLL~~~~~~kk~~a~~~~~~~~~~  298 (743)
T TIGR00870       264 AAKEGRIVLFRLKLAIKYKQKKFVAWPNGQQLLSL  298 (743)
T ss_pred             hhhcCCccHHHHHHHHHHhcceeeccCcchHhHhh
Confidence            88888888888888765554444444555555543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.95  E-value=5.6e-27  Score=214.48  Aligned_cols=215  Identities=23%  Similarity=0.263  Sum_probs=121.6

Q ss_pred             hHHHHHHhCCCHHHHHHHHhC--CCCCCCCCCCCchHHH-HHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcC-
Q psy4998          59 PALHIAAKKDDCKAAALLLEN--DHSPDVKSNSHFTPLH-IAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWG-  134 (318)
Q Consensus        59 ~~l~~A~~~~~~~~~~~ll~~--~~~~~~~~~~~~~~l~-~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~-  134 (318)
                      ..++.|+..|+.+.++.+++.  +.+++..|..|.|||| .|+..++.++++.|++.+.    .+..|.||||.|+..+ 
T Consensus        19 ~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~   94 (743)
T TIGR00870        19 KAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISLEYV   94 (743)
T ss_pred             HHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHhccH
Confidence            344445555555555555544  4444445555555555 4444555555555555543    2334555555554411 


Q ss_pred             --cHHHHHHHHHcCCC----------CCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCC--------------CC
Q psy4998         135 --KVAMVELLISKGAN----------IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT--------------KA  188 (318)
Q Consensus       135 --~~~~~~~L~~~~~~----------~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~--------------~~  188 (318)
                        ...++..+...+..          .......|.||||.|+..|+.+++++|+++|++++.+.              ..
T Consensus        95 ~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~  174 (743)
T TIGR00870        95 DAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYH  174 (743)
T ss_pred             HHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccc
Confidence              11222222222211          00112245566666666666666666666666555321              24


Q ss_pred             CCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC---------CHhHHHHHHhCCCCC-------CCCC
Q psy4998         189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG---------RVLIIDLLLGAGAQP-------NATT  252 (318)
Q Consensus       189 ~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~---------~~~~~~~Ll~~g~~~-------~~~~  252 (318)
                      |.+|||.|+..++.+++++|+++|++++..|..|+||||+|+..+         ...+.+++++.++..       +..|
T Consensus       175 g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N  254 (743)
T TIGR00870       175 GESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILN  254 (743)
T ss_pred             cccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcC
Confidence            677777777777777777777777777777777777777777765         123445555544433       5567


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHhhhc
Q psy4998         253 NHGQTALNIAQKLGYISVIETLKIV  277 (318)
Q Consensus       253 ~~g~t~l~~A~~~~~~~~~~~l~~~  277 (318)
                      ..|.||+++|+..|+.+++++|...
T Consensus       255 ~~g~TPL~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       255 HQGLTPLKLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             CCCCCchhhhhhcCCccHHHHHHHH
Confidence            7777788887777777777777663

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507|consensus

Probab=99.95  E-value=3.1e-27  Score=200.17  Aligned_cols=235  Identities=30%  Similarity=0.423  Sum_probs=195.8

Q ss_pred             HHHHHHHcCCHHHHHHHHhc-----------------CCCCCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchH
Q psy4998          31 PLAVAMQQGHDRVVAVLLEN-----------------DTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTP   93 (318)
Q Consensus        31 ~l~~A~~~g~~~~~~~ll~~-----------------~~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   93 (318)
                      -+.-|++.|+++.+..+++.                 ...+.++.|+||.|+.+|+.++++.|++..+-.+..+..|.+|
T Consensus         6 el~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~p   85 (854)
T KOG0507|consen    6 ELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILP   85 (854)
T ss_pred             hHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcce
Confidence            45667777777777777764                 1124567788888888888888888888877777777888888


Q ss_pred             HHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHH
Q psy4998          94 LHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVID  173 (318)
Q Consensus        94 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  173 (318)
                      ||+|+..|+.++++.++.++..++.....|.+|||.|+..|+.+++.+|+.++.++-.++..+.+++..|++.|..++++
T Consensus        86 lhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq  165 (854)
T KOG0507|consen   86 LHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQ  165 (854)
T ss_pred             EEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHH
Confidence            88888888888888888888777777788888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHcCCCC--------cCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCC
Q psy4998         174 ILIEKGAAL--------YSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG  245 (318)
Q Consensus       174 ~ll~~~~~~--------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g  245 (318)
                      .|++...+.        ..+...+.+|+|.|+++|+.++++.|++.|.++|..... .|+||.|+..|..+++.+|++.|
T Consensus       166 ~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~-gtalheaalcgk~evvr~ll~~g  244 (854)
T KOG0507|consen  166 MLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTED-GTALHEAALCGKAEVVRFLLEIG  244 (854)
T ss_pred             HHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCccccccc-chhhhhHhhcCcchhhhHHHhhc
Confidence            888752221        234556788999999999999999999999999987775 57999999999999999999999


Q ss_pred             CCCCCCCCCCCCHHHHHHHcC
Q psy4998         246 AQPNATTNHGQTALNIAQKLG  266 (318)
Q Consensus       246 ~~~~~~~~~g~t~l~~A~~~~  266 (318)
                      .+...++.+|+|++++...+-
T Consensus       245 in~h~~n~~~qtaldil~d~~  265 (854)
T KOG0507|consen  245 INTHIKNQHGQTALDIIIDLQ  265 (854)
T ss_pred             cccccccccchHHHHHHHhcc
Confidence            999999999999999987664

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=1.5e-25  Score=206.13  Aligned_cols=190  Identities=23%  Similarity=0.262  Sum_probs=168.8

Q ss_pred             HHHHHHHHhcCCC--CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCccc
Q psy4998          41 DRVVAVLLENDTK--GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN  118 (318)
Q Consensus        41 ~~~~~~ll~~~~~--~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~  118 (318)
                      .++-..+.+.+..  +....++|+.|+..|+.++++.|++.|.+++..|..|.||||+|+..|+.+++++|+++|++++.
T Consensus       507 l~v~~ll~~~~~~~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~  586 (823)
T PLN03192        507 LNVGDLLGDNGGEHDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHI  586 (823)
T ss_pred             ccHHHHHhhcccccCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCC
Confidence            3444444444332  22346889999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhh
Q psy4998         119 QAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASH  198 (318)
Q Consensus       119 ~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~  198 (318)
                      ++..|.||||.|+..|+.+++++|++.+...+  ...+.++||.|+..|+.++++.|+++|++++.++..|.||||.|+.
T Consensus       587 ~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~  664 (823)
T PLN03192        587 RDANGNTALWNAISAKHHKIFRILYHFASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMA  664 (823)
T ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHhcCcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            99999999999999999999999998876543  3356689999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCcCCCCC-CCHHHHHHHc
Q psy4998         199 FGQLNMVRYLVENGANVNATTNLG-YTPLHQASQQ  232 (318)
Q Consensus       199 ~~~~~~~~~Ll~~g~~~~~~~~~g-~t~l~~A~~~  232 (318)
                      .|+.+++++|+++|++++..+..| .||.+++...
T Consensus       665 ~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        665 EDHVDMVRLLIMNGADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             CCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHH
Confidence            999999999999999999999887 8998877543

>KOG0507|consensus

Probab=99.93  E-value=3.4e-25  Score=187.90  Aligned_cols=242  Identities=27%  Similarity=0.383  Sum_probs=211.4

Q ss_pred             ccccChHHHHHHHHhcCC-------------CCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCC----CCCCChhHHHHH
Q psy4998           2 AAQENHDGVVRYLLSKGG-------------NQTLATEDGFTPLAVAMQQGHDRVVAVLLENDT----KGKVKLPALHIA   64 (318)
Q Consensus         2 A~~~g~~~~v~~Ll~~g~-------------~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~----~~~~~~~~l~~A   64 (318)
                      |++.|+.+-+..|++...             ..+..|.+|+|+||.|+.+|+.++++.|++..+    .+..+.+|||+|
T Consensus        10 a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhla   89 (854)
T KOG0507|consen   10 ACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLA   89 (854)
T ss_pred             hhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEeh
Confidence            788999999999998521             245678899999999999999999999999743    356788999999


Q ss_pred             HhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHH
Q psy4998          65 AKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLIS  144 (318)
Q Consensus        65 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~  144 (318)
                      +-+|+.++++.++..+..+|..+..|.+|||.|+..|+.+++.+|++++++.-.++..+.+++..|+..|..++++.|++
T Consensus        90 aw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~  169 (854)
T KOG0507|consen   90 AWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQ  169 (854)
T ss_pred             hhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhh
Confidence            99999999999999998889899999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCC--------CccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCC
Q psy4998         145 KGANI--------EAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN  216 (318)
Q Consensus       145 ~~~~~--------~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~  216 (318)
                      .....        ..++..+.+++|.|+++|+.++++.|++.|.+++.....| |+||.|+..|..+++.+|++.|++..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h  248 (854)
T KOG0507|consen  170 KKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTH  248 (854)
T ss_pred             hccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccc
Confidence            63221        2345567789999999999999999999999998776655 79999999999999999999999999


Q ss_pred             cCCCCCCCHHHHHHHcC---CHhHHHHHHhC
Q psy4998         217 ATTNLGYTPLHQASQQG---RVLIIDLLLGA  244 (318)
Q Consensus       217 ~~~~~g~t~l~~A~~~~---~~~~~~~Ll~~  244 (318)
                      .++.+|+|+|.+-...-   ..+++-++...
T Consensus       249 ~~n~~~qtaldil~d~~~~~~~ei~ga~~~~  279 (854)
T KOG0507|consen  249 IKNQHGQTALDIIIDLQENRRYEIAGAVKNF  279 (854)
T ss_pred             cccccchHHHHHHHhcchhhhhhhhhhhhcc
Confidence            99999999998876543   34555555443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.92  E-value=6.5e-24  Score=157.94  Aligned_cols=143  Identities=20%  Similarity=0.283  Sum_probs=102.7

Q ss_pred             CCcccccCCCChHHHHHHHcCcH----HHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHH---HHHHHHHcCCCCcCCC
Q psy4998         114 ANVNNQAKHNITPLHVACKWGKV----AMVELLISKGANIEAKTRDGLTPLHCAARSGHDN---VIDILIEKGAALYSKT  186 (318)
Q Consensus       114 ~~~~~~~~~~~~~l~~a~~~~~~----~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~---~~~~ll~~~~~~~~~~  186 (318)
                      .++...+..+.++++.|++.|+.    +++++|.+.+..++..+..|+||||+|+..|+.+   ++++|++.|++++.++
T Consensus        11 ~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d   90 (166)
T PHA02743         11 LGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARE   90 (166)
T ss_pred             hHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCC
Confidence            33444445556667777776665    4455566666666666777777777777776644   3677777787777776


Q ss_pred             -CCCCcHhHHHhhcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCC
Q psy4998         187 -KAGFTPLHIASHFGQLNMVRYLVE-NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQ  256 (318)
Q Consensus       187 -~~~~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~  256 (318)
                       ..|.||||+|+..++.+++++|++ .|++++.++..|.||||+|+..++.+++++|+++|++++.++..|.
T Consensus        91 ~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743         91 LGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence             467888888888888888888874 6888888787888888888888888888888888888877766654

>KOG0505|consensus

Probab=99.92  E-value=2.2e-24  Score=176.62  Aligned_cols=223  Identities=30%  Similarity=0.398  Sum_probs=149.7

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHH
Q psy4998          32 LAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAE  107 (318)
Q Consensus        32 l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  107 (318)
                      +.-|+..|..+-++.|+..+..    +..|.|++|.|+...+.+|+++++++|.+++..+..++||+|.|+..|+..+++
T Consensus        44 ~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~  123 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVE  123 (527)
T ss_pred             HHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHH
Confidence            4455555566666666555433    334555666666666666666666666666555555666666666666666666


Q ss_pred             HHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCC---HHHHHHHHHcCCCCc
Q psy4998         108 LLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK-GANIEAKTRDGLTPLHCAARSGH---DNVIDILIEKGAALY  183 (318)
Q Consensus       108 ~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~ll~~~~~~~  183 (318)
                      +++++|+++...+..|..|...+......+++..-... |+++           ..+-....   ..-+...++.|...+
T Consensus       124 ~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~i-----------ea~R~~~e~~ml~D~~q~l~~G~~~d  192 (527)
T KOG0505|consen  124 YLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDI-----------EAARKAEEQTMLDDARQWLNAGAELD  192 (527)
T ss_pred             HHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccH-----------HHHhhhhHHHHHHHHHHHHhcccccc
Confidence            66666555555555555555555444433333333322 2221           11111111   112233334788888


Q ss_pred             CCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q psy4998         184 SKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQ  263 (318)
Q Consensus       184 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~  263 (318)
                      .....|-|.+|.|+..|..+++++|++.|.+++.+|.+|+||||.|+..|..+++++|+++|++++.....|++|+.+|.
T Consensus       193 ~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~d  272 (527)
T KOG0505|consen  193 ARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVAD  272 (527)
T ss_pred             ccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchh
Confidence            88777999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             Hc
Q psy4998         264 KL  265 (318)
Q Consensus       264 ~~  265 (318)
                      .-
T Consensus       273 ee  274 (527)
T KOG0505|consen  273 EE  274 (527)
T ss_pred             hh
Confidence            53

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=5.3e-23  Score=153.83  Aligned_cols=130  Identities=25%  Similarity=0.327  Sum_probs=111.9

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHH------cCCCCcCCCCCCCcHhHHHhhcCC----HHHHHHHHHcCCCCCcCCC
Q psy4998         151 AKTRDGLTPLHCAARSGHDNVIDILIE------KGAALYSKTKAGFTPLHIASHFGQ----LNMVRYLVENGANVNATTN  220 (318)
Q Consensus       151 ~~~~~~~~~l~~a~~~~~~~~~~~ll~------~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~g~~~~~~~~  220 (318)
                      .++..|.|+||+|+..|+.++++.|+.      .|++++.++..|.||||+|+..++    .+++++|+++|++++.++.
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~   95 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEM   95 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCc
Confidence            456678888888888888888887754      356778888889999999999888    5888999999999998885


Q ss_pred             -CCCCHHHHHHHcCCHhHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcccc
Q psy4998         221 -LGYTPLHQASQQGRVLIIDLLLG-AGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTET  280 (318)
Q Consensus       221 -~g~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  280 (318)
                       .|.||||+|+..++.+++++|++ .|++++.+|..|.||+++|...++.+++++|..+...
T Consensus        96 ~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         96 LEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence             89999999999999999999997 5999999999999999999999999999999887554

>KOG0505|consensus

Probab=99.90  E-value=3.2e-23  Score=169.90  Aligned_cols=219  Identities=28%  Similarity=0.394  Sum_probs=187.0

Q ss_pred             ccccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHHH
Q psy4998           2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALLL   77 (318)
Q Consensus         2 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~ll   77 (318)
                      |+..|..+-|..|+..|++++..+.+|.|+||-||.-.+.+||++|++++++    +..++||+|.|+.-|+..++++++
T Consensus        47 A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li  126 (527)
T KOG0505|consen   47 ACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLI  126 (527)
T ss_pred             ccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHH
Confidence            7889999999999999999999999999999999999999999999999765    677899999999999999999999


Q ss_pred             hCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhc-cCCcccccCCCChHHHHHHHcC---c-HHHHHHHHHcCCCCCcc
Q psy4998          78 ENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQK-HANVNNQAKHNITPLHVACKWG---K-VAMVELLISKGANIEAK  152 (318)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~l~~a~~~~---~-~~~~~~L~~~~~~~~~~  152 (318)
                      ..|+++-..+..|..|...+..-...+++...... +.+           +..+-..-   - -++-+|+. .|...+..
T Consensus       127 ~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~-----------iea~R~~~e~~ml~D~~q~l~-~G~~~d~~  194 (527)
T KOG0505|consen  127 QHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGID-----------IEAARKAEEQTMLDDARQWLN-AGAELDAR  194 (527)
T ss_pred             HhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhccc-----------HHHHhhhhHHHHHHHHHHHHh-cccccccc
Confidence            99999888888888888877755555555554432 222           11111111   1 23344444 78888888


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Q psy4998         153 TRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQ  232 (318)
Q Consensus       153 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~  232 (318)
                      +..|-|.||.|+.+|..+++.+|++.|.+++.+|..|++|||.|+..+..++++.|+++|++++.....|.||+.+|..-
T Consensus       195 ~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  195 HARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             ccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhhh
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999998753

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.90  E-value=7e-23  Score=152.39  Aligned_cols=145  Identities=22%  Similarity=0.273  Sum_probs=126.1

Q ss_pred             CCCCCCCCCCCCchHHHHHHHcCCH----HHHHHHHhccCCcccccCCCChHHHHHHHcCcHHH---HHHHHHcCCCCCc
Q psy4998          79 NDHSPDVKSNSHFTPLHIAAHYGNT----NIAELLIQKHANVNNQAKHNITPLHVACKWGKVAM---VELLISKGANIEA  151 (318)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~a~~~~~~----~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~---~~~L~~~~~~~~~  151 (318)
                      ++.+++..+..+.++||.|++.|+.    +++++|.+.+..++..+..|.||||+|+..|+.+.   +++|++.|++++.
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~   88 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA   88 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence            3455566677788899999999998    56667788888888888899999999999887654   7899999999998


Q ss_pred             cC-CCCChHHHHHHHcCCHHHHHHHHH-cCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCC
Q psy4998         152 KT-RDGLTPLHCAARSGHDNVIDILIE-KGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGY  223 (318)
Q Consensus       152 ~~-~~~~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~  223 (318)
                      ++ ..|.||||+|+..++.+++++|+. .|++++.++..|.||||+|+..++.+++++|+++|++++.++..|.
T Consensus        89 ~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743         89 RELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            87 589999999999999999999995 7999999999999999999999999999999999999998887765

>KOG4369|consensus

Probab=99.90  E-value=4.4e-24  Score=187.64  Aligned_cols=244  Identities=26%  Similarity=0.354  Sum_probs=178.4

Q ss_pred             CccccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC------CCCChhHHHHHHhCCCHHHHH
Q psy4998           1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK------GKVKLPALHIAAKKDDCKAAA   74 (318)
Q Consensus         1 lA~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~------~~~~~~~l~~A~~~~~~~~~~   74 (318)
                      +||.-|+.++|..||..|++-..++-..+|||.+|...|..++++.|+..|..      .+.+..||..|..+|+.+.++
T Consensus       830 lacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~  909 (2131)
T KOG4369|consen  830 LACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATL  909 (2131)
T ss_pred             EecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHH
Confidence            35556666666666666666666666666666666666666666666665532      333455666666666666666


Q ss_pred             HHHhCCCCCCCCC-CCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCcc-
Q psy4998          75 LLLENDHSPDVKS-NSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK-  152 (318)
Q Consensus        75 ~ll~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~-  152 (318)
                      .|++.|.++|..- .+-+|+|.+|+..|..+++..||...+.+..+...|.|||+-++..|-+++=.+|+..|++.+.. 
T Consensus       910 ~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasP  989 (2131)
T KOG4369|consen  910 SLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASP  989 (2131)
T ss_pred             HHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCC
Confidence            6666666665532 23346666666666666666666666666666677777777777777777777777777776543 


Q ss_pred             -CCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Q psy4998         153 -TRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQ  231 (318)
Q Consensus       153 -~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~  231 (318)
                       .....|+|.+++..|+...+.+|++..+.+..++..|+|+|..|+..|.+..+..|+++++|++..|....+++.-|.+
T Consensus       990 vp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~S~~maafR 1069 (2131)
T KOG4369|consen  990 VPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQDNRTNSRTMAAFR 1069 (2131)
T ss_pred             CCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhcccChhhhhcccccccHHHHH
Confidence             2234567777778888888888887777777888999999999999999999999999999999999999999999999


Q ss_pred             cCCHhHHHHHHhC
Q psy4998         232 QGRVLIIDLLLGA  244 (318)
Q Consensus       232 ~~~~~~~~~Ll~~  244 (318)
                      +|+++||+|....
T Consensus      1070 Kgh~~iVk~mv~~ 1082 (2131)
T KOG4369|consen 1070 KGHFAIVKKMVPP 1082 (2131)
T ss_pred             hchhheeccccCc
Confidence            9999999998765

>KOG0514|consensus

Probab=99.89  E-value=7e-23  Score=160.03  Aligned_cols=164  Identities=30%  Similarity=0.431  Sum_probs=141.8

Q ss_pred             cccccCCCChHHHHHHHcCcHHHHHHHHHcC-CCCCccCCCCChHHHHHHHc-----CCHHHHHHHHHcCCCCcCC-CCC
Q psy4998         116 VNNQAKHNITPLHVACKWGKVAMVELLISKG-ANIEAKTRDGLTPLHCAARS-----GHDNVIDILIEKGAALYSK-TKA  188 (318)
Q Consensus       116 ~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~l~~a~~~-----~~~~~~~~ll~~~~~~~~~-~~~  188 (318)
                      +|..|.+|.|+|||++..+++++++.|++.| .+++..+.-|.||+++++..     ...++|..|...| ++|.+ ...
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhh
Confidence            4566788999999999999999999999887 57888888899998887643     3467888888765 35555 346


Q ss_pred             CCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCC
Q psy4998         189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA-GAQPNATTNHGQTALNIAQKLGY  267 (318)
Q Consensus       189 ~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~  267 (318)
                      |.|+|++|+.+|+.++++.||.-|+|+|..|.+|.|+|+.|+++|+++++++||.. ++|+...|..|-|+|.+|...|+
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh  419 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGH  419 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCc
Confidence            99999999999999999999999999999999999999999999999999999987 89999999999999999999999


Q ss_pred             HHHHHHhhhcccc
Q psy4998         268 ISVIETLKIVTET  280 (318)
Q Consensus       268 ~~~~~~l~~~~~~  280 (318)
                      .|+.-+|-.+..-
T Consensus       420 ~eIa~mlYa~~n~  432 (452)
T KOG0514|consen  420 REIAVMLYAHMNI  432 (452)
T ss_pred             hHHHHHHHHHHHh
Confidence            9998888665443

>PHA02741 hypothetical protein; Provisional

Probab=99.88  E-value=8.1e-22  Score=147.46  Aligned_cols=130  Identities=22%  Similarity=0.321  Sum_probs=104.4

Q ss_pred             ccCCCChHHHHHHHcCcHHHHHHHHH------cCCCCCccCCCCChHHHHHHHcCC----HHHHHHHHHcCCCCcCCCC-
Q psy4998         119 QAKHNITPLHVACKWGKVAMVELLIS------KGANIEAKTRDGLTPLHCAARSGH----DNVIDILIEKGAALYSKTK-  187 (318)
Q Consensus       119 ~~~~~~~~l~~a~~~~~~~~~~~L~~------~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~ll~~~~~~~~~~~-  187 (318)
                      .+..|.||||.|+..|+.++++.|+.      .+.+++.++..|.||||+|+..++    .+++++|++.|++++.++. 
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~   96 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEML   96 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcC
Confidence            34456666666666666666665542      245667777888888888888887    5888899999999988875 


Q ss_pred             CCCcHhHHHhhcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCC
Q psy4998         188 AGFTPLHIASHFGQLNMVRYLVE-NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP  248 (318)
Q Consensus       188 ~~~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~  248 (318)
                      .|.||||+|+..++.+++++|++ .|++++..+..|.||||+|+..++.+++++|++.++..
T Consensus        97 ~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741         97 EGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            89999999999999999999997 58999999999999999999999999999999886554

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.88  E-value=2.3e-21  Score=154.98  Aligned_cols=112  Identities=21%  Similarity=0.290  Sum_probs=53.8

Q ss_pred             HHHHHHcCCHHHHHHHHhccCCccccc----CCCChHHHHHHHcCcHHHHHHHHHcCCCCCcc-CCCCChHHHHHHHcCC
Q psy4998          94 LHIAAHYGNTNIAELLIQKHANVNNQA----KHNITPLHVACKWGKVAMVELLISKGANIEAK-TRDGLTPLHCAARSGH  168 (318)
Q Consensus        94 l~~a~~~~~~~~~~~ll~~~~~~~~~~----~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~-~~~~~~~l~~a~~~~~  168 (318)
                      |+.|+..++.+++++|+++|++++.++    ..|.||||+|+..++.+++++|+++|++++.. +..|.||||.|+..++
T Consensus        37 L~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~  116 (300)
T PHA02884         37 LYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGC  116 (300)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCC
Confidence            344444455555555555555554432    24445555555555555555555555544443 2334445555554455


Q ss_pred             HHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHH
Q psy4998         169 DNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV  205 (318)
Q Consensus       169 ~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  205 (318)
                      .+++++|+++|++++.++..|.||+|+|+..++.+++
T Consensus       117 ~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~  153 (300)
T PHA02884        117 LKCLEILLSYGADINIQTNDMVTPIELALMICNNFLA  153 (300)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHH
Confidence            5555555555544444444444555544444444443

>KOG0514|consensus

Probab=99.88  E-value=2.3e-22  Score=157.19  Aligned_cols=161  Identities=24%  Similarity=0.342  Sum_probs=145.1

Q ss_pred             CCCCCCCCchHHHHHHHcCCHHHHHHHHhccC-CcccccCCCChHHHHHHHc-----CcHHHHHHHHHcCCCCCc-cCCC
Q psy4998          83 PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHA-NVNNQAKHNITPLHVACKW-----GKVAMVELLISKGANIEA-KTRD  155 (318)
Q Consensus        83 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~l~~a~~~-----~~~~~~~~L~~~~~~~~~-~~~~  155 (318)
                      +|..|.+|+|+|||++.+.+.++|+.|++.|. +++..+..|+||+++++..     .+.+++..|...|- +|. -..-
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn-VNaKAsQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD-VNAKASQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC-cchhhhhh
Confidence            57789999999999999999999999999885 8888999999999998754     36788888888863 443 3456


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcCC
Q psy4998         156 GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN-GANVNATTNLGYTPLHQASQQGR  234 (318)
Q Consensus       156 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~  234 (318)
                      |.|+|++|+.+|+.++++.|+.-|+++|.+|.+|-|+|+.|+.+|+.+++++||.. +.|+..+|.+|.|+|.+|...|+
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh  419 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGH  419 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCc
Confidence            89999999999999999999999999999999999999999999999999999975 78999999999999999999999


Q ss_pred             HhHHHHHHhC
Q psy4998         235 VLIIDLLLGA  244 (318)
Q Consensus       235 ~~~~~~Ll~~  244 (318)
                      .+|.-+|..+
T Consensus       420 ~eIa~mlYa~  429 (452)
T KOG0514|consen  420 REIAVMLYAH  429 (452)
T ss_pred             hHHHHHHHHH
Confidence            9999988765

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.88  E-value=3.2e-21  Score=154.17  Aligned_cols=153  Identities=23%  Similarity=0.259  Sum_probs=130.1

Q ss_pred             ccCCCC-hHHHHHHHcCcHHHHHHHHHcCCCCCccC----CCCChHHHHHHHcCCHHHHHHHHHcCCCCcCC-CCCCCcH
Q psy4998         119 QAKHNI-TPLHVACKWGKVAMVELLISKGANIEAKT----RDGLTPLHCAARSGHDNVIDILIEKGAALYSK-TKAGFTP  192 (318)
Q Consensus       119 ~~~~~~-~~l~~a~~~~~~~~~~~L~~~~~~~~~~~----~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~-~~~~~t~  192 (318)
                      .+..+. ++++.|+..|+.+++++|+++|++++.++    ..|.||||+|+..++.+++++|+++|++++.. +..|.||
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~Tp  107 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITP  107 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCH
Confidence            444454 46677888899999999999999999864    58999999999999999999999999999986 4679999


Q ss_pred             hHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q psy4998         193 LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIE  272 (318)
Q Consensus       193 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~  272 (318)
                      ||.|+..++.+++++|+++|++++.++..|.||||+|+..++.+++..+...  .   .+..+.+|..++   ++.|+++
T Consensus       108 Lh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~---~n~ei~~  179 (300)
T PHA02884        108 LYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDN--E---ISNFYKHPKKIL---INFDILK  179 (300)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC--c---ccccccChhhhh---ccHHHHH
Confidence            9999999999999999999999999999999999999999988888666433  2   345667888875   4789999


Q ss_pred             Hhhhccc
Q psy4998         273 TLKIVTE  279 (318)
Q Consensus       273 ~l~~~~~  279 (318)
                      +|.++.-
T Consensus       180 ~Lish~v  186 (300)
T PHA02884        180 ILVSHFI  186 (300)
T ss_pred             HHHHHHH
Confidence            8887754

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.87  E-value=2.3e-21  Score=143.13  Aligned_cols=127  Identities=22%  Similarity=0.269  Sum_probs=86.9

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHcC--CC-----CcCCCCCCCcHhHHHhhcCCH---HHHHHHHHcCCCCCcCCC
Q psy4998         151 AKTRDGLTPLHCAARSGHDNVIDILIEKG--AA-----LYSKTKAGFTPLHIASHFGQL---NMVRYLVENGANVNATTN  220 (318)
Q Consensus       151 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~--~~-----~~~~~~~~~t~l~~a~~~~~~---~~~~~Ll~~g~~~~~~~~  220 (318)
                      .++..|.||||+|+..|+..  .++...+  .+     ++.++..|.||||+|+..++.   +++++|++.|++++.++.
T Consensus        12 ~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~   89 (154)
T PHA02736         12 EPDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKER   89 (154)
T ss_pred             hcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCC
Confidence            34555666666666666532  2222111  11     223566777888888877765   356777788888887763


Q ss_pred             -CCCCHHHHHHHcCCHhHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccc
Q psy4998         221 -LGYTPLHQASQQGRVLIIDLLLGA-GAQPNATTNHGQTALNIAQKLGYISVIETLKIVTE  279 (318)
Q Consensus       221 -~g~t~l~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  279 (318)
                       .|.||||+|+..++.+++++|+++ |++++.++..|.||+++|+..|+.+++++|...+.
T Consensus        90 ~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga  150 (154)
T PHA02736         90 VFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGA  150 (154)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence             788888888888888888888763 77888888888888888888888888887776654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.86  E-value=2.9e-21  Score=142.58  Aligned_cols=99  Identities=25%  Similarity=0.352  Sum_probs=87.8

Q ss_pred             ccCCCCChHHHHHHHcCCH---HHHHHHHHcCCCCcCCC-CCCCcHhHHHhhcCCHHHHHHHHHc-CCCCCcCCCCCCCH
Q psy4998         151 AKTRDGLTPLHCAARSGHD---NVIDILIEKGAALYSKT-KAGFTPLHIASHFGQLNMVRYLVEN-GANVNATTNLGYTP  225 (318)
Q Consensus       151 ~~~~~~~~~l~~a~~~~~~---~~~~~ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~  225 (318)
                      ..+..|.|+||+|+..+..   +++++|++.|++++.++ ..|.||||+|+..++.+++++|+++ |++++..+..|.||
T Consensus        50 ~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tp  129 (154)
T PHA02736         50 EYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTP  129 (154)
T ss_pred             HhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCH
Confidence            3567888999999988876   46888999999999887 4899999999999999999999984 89999999999999


Q ss_pred             HHHHHHcCCHhHHHHHHhCCCCCC
Q psy4998         226 LHQASQQGRVLIIDLLLGAGAQPN  249 (318)
Q Consensus       226 l~~A~~~~~~~~~~~Ll~~g~~~~  249 (318)
                      ||+|+..|+.+++++|+++|++.+
T Consensus       130 L~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        130 YYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC
Confidence            999999999999999999998865

>KOG0512|consensus

Probab=99.85  E-value=3.5e-20  Score=130.17  Aligned_cols=141  Identities=33%  Similarity=0.469  Sum_probs=116.5

Q ss_pred             HHHHHHHcCcHHHHHHHHHcC-CCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHH
Q psy4998         126 PLHVACKWGKVAMVELLISKG-ANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNM  204 (318)
Q Consensus       126 ~l~~a~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  204 (318)
                      .+..|+..+.+..|+.|++-. -.++.+|..+.||||-|+.+|+.++++.|+..|++.+.+...|+||||.||..++.++
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~v  145 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEV  145 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhH
Confidence            355677777777777777654 3467888888888888888888889988888888888888899999999999999999


Q ss_pred             HHHHHHcCCCCCcCCCCCCCHHHHHHHcCCH-hHHHHHH-hCCCCCCCCCCCCCCHHHHHHHcC
Q psy4998         205 VRYLVENGANVNATTNLGYTPLHQASQQGRV-LIIDLLL-GAGAQPNATTNHGQTALNIAQKLG  266 (318)
Q Consensus       205 ~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~-~~~~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~  266 (318)
                      +.+|+++|+|+|.......||||+|+...+. ..+.+|+ ..++++..++..+.||+.+|-+-+
T Consensus       146 a~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  146 AGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             HHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            9999999999999888889999999877664 4555554 458888889999999999998775

>KOG3676|consensus

Probab=99.84  E-value=6.5e-20  Score=157.89  Aligned_cols=187  Identities=26%  Similarity=0.297  Sum_probs=155.0

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcc---------CCcccccCCCChHHHHHHHc---CcHHHHHHHHHcCCC----C-CccC
Q psy4998          91 FTPLHIAAHYGNTNIAELLIQKH---------ANVNNQAKHNITPLHVACKW---GKVAMVELLISKGAN----I-EAKT  153 (318)
Q Consensus        91 ~~~l~~a~~~~~~~~~~~ll~~~---------~~~~~~~~~~~~~l~~a~~~---~~~~~~~~L~~~~~~----~-~~~~  153 (318)
                      +.++..+...+..+.+..++..+         .+++.+...|.|.||.|..+   ++-+++..|++.-..    + ....
T Consensus       102 ~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~ee  181 (782)
T KOG3676|consen  102 RDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEE  181 (782)
T ss_pred             hhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHh
Confidence            35677777777777777666554         45566667789999988764   455788888875221    1 1223


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCC-----------------------CCCCcHhHHHhhcCCHHHHHHHHH
Q psy4998         154 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKT-----------------------KAGFTPLHIASHFGQLNMVRYLVE  210 (318)
Q Consensus       154 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-----------------------~~~~t~l~~a~~~~~~~~~~~Ll~  210 (318)
                      ..|.|+||+|+.+.+.++|.+|++.|+|++.+-                       ..|+.||..||+.++.+++++|++
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            468899999999999999999999998875321                       237899999999999999999999


Q ss_pred             cCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHhhhc
Q psy4998         211 NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ--PNATTNHGQTALNIAQKLGYISVIETLKIV  277 (318)
Q Consensus       211 ~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  277 (318)
                      +|+|++.+|..|+|.||..+.+-..++-++++++|++  ...+|+.|.|||.+|++.|+.++.+.+.+.
T Consensus       262 ~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  262 HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             cCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999999999999999999999999999999999999  889999999999999999999999999877

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.82  E-value=1.8e-19  Score=120.10  Aligned_cols=89  Identities=42%  Similarity=0.655  Sum_probs=73.3

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHH
Q psy4998         160 LHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIID  239 (318)
Q Consensus       160 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~  239 (318)
                      ||+|+..++.+++++|++.+.+++.    |.||+|+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            6788888888888888888776655    778888888888888888888888888888888888888888888888888


Q ss_pred             HHHhCCCCCCCCC
Q psy4998         240 LLLGAGAQPNATT  252 (318)
Q Consensus       240 ~Ll~~g~~~~~~~  252 (318)
                      +|+++|++++.+|
T Consensus        77 ~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTT-TTSS-
T ss_pred             HHHHcCCCCCCcC
Confidence            8888888887664

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.81  E-value=1.8e-18  Score=123.49  Aligned_cols=123  Identities=44%  Similarity=0.711  Sum_probs=109.1

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Q psy4998         152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQ  231 (318)
Q Consensus       152 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~  231 (318)
                      .+..|.|||++|+..++.+++++|++.+.+.+..+..|.+|+|.|+..++.+++++|++.|++++..+..|.||+|+|+.
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            34668889999999999999999998888877888889999999999999999999999988888888888999999999


Q ss_pred             cCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHh
Q psy4998         232 QGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL  274 (318)
Q Consensus       232 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  274 (318)
                      .++.+++++|+++|.+++..+..|.||+++|...++.+++++|
T Consensus        83 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          83 NGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            9999999999999988888888999999999999999988887

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0512|consensus

Probab=99.81  E-value=7.8e-19  Score=123.46  Aligned_cols=141  Identities=31%  Similarity=0.393  Sum_probs=115.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhccC-CcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHH
Q psy4998          93 PLHIAAHYGNTNIAELLIQKHA-NVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNV  171 (318)
Q Consensus        93 ~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  171 (318)
                      .+.+|+..+....|+.|++..+ .++.+|..++||||.|+.+|+.++++.|+.+|++.+.+...|+||||.||..++.++
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~v  145 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEV  145 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhH
Confidence            4567888888888888887655 577788888899999999999999999998888888888889999999999999999


Q ss_pred             HHHHHHcCCCCcCCCCCCCcHhHHHhhcCC-HHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHcC
Q psy4998         172 IDILIEKGAALYSKTKAGFTPLHIASHFGQ-LNMVRYLVE-NGANVNATTNLGYTPLHQASQQG  233 (318)
Q Consensus       172 ~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~-~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~  233 (318)
                      +.+|+++|++++.......||||.||...+ ...+.+|+. .++++..++..+.||+.+|-+.+
T Consensus       146 a~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  146 AGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             HHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            999999999988888888889998887655 445555553 57788888888889998887654

>KOG0195|consensus

Probab=99.78  E-value=7.5e-19  Score=133.75  Aligned_cols=118  Identities=34%  Similarity=0.540  Sum_probs=66.0

Q ss_pred             CCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHH
Q psy4998         147 ANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPL  226 (318)
Q Consensus       147 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l  226 (318)
                      -+.+.-|..|.+|||+|++.|+..++++|+.+|+.+|..+.-..||||+|+..|+.++++.|++..+|+|..+..|.|||
T Consensus        25 hdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntpl  104 (448)
T KOG0195|consen   25 HDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPL  104 (448)
T ss_pred             cccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCch
Confidence            34444444555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Q psy4998         227 HQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQK  264 (318)
Q Consensus       227 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~  264 (318)
                      |||+..|+-.+++-|+..|+-+++.++.|.||++.|..
T Consensus       105 hyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp  142 (448)
T KOG0195|consen  105 HYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKP  142 (448)
T ss_pred             hhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhch
Confidence            55555555555555555555555555555555555543

>KOG3676|consensus

Probab=99.78  E-value=4.4e-18  Score=146.76  Aligned_cols=186  Identities=26%  Similarity=0.320  Sum_probs=143.4

Q ss_pred             hHHHHHHhCCCHHHHHHHHhCC---------CCCCCCCCCCchHHHHHHHc---CCHHHHHHHHhccCCc-cc----ccC
Q psy4998          59 PALHIAAKKDDCKAAALLLEND---------HSPDVKSNSHFTPLHIAAHY---GNTNIAELLIQKHANV-NN----QAK  121 (318)
Q Consensus        59 ~~l~~A~~~~~~~~~~~ll~~~---------~~~~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~-~~----~~~  121 (318)
                      .++..|...+..+.+..+...+         .+.+.+...|.|.||.|..+   ++.++++.|++..+.+ +.    ..-
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            4555666666666665555443         33444556677777777763   2336777777654421 11    112


Q ss_pred             CCChHHHHHHHcCcHHHHHHHHHcCCCCCcc-----------------------CCCCChHHHHHHHcCCHHHHHHHHHc
Q psy4998         122 HNITPLHVACKWGKVAMVELLISKGANIEAK-----------------------TRDGLTPLHCAARSGHDNVIDILIEK  178 (318)
Q Consensus       122 ~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~-----------------------~~~~~~~l~~a~~~~~~~~~~~ll~~  178 (318)
                      .|.||||.|+.+.+.+++.+|++.|+|++.+                       -..|+.||..|+..++.+++++|+++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            4777777777777777777777777775433                       12477899999999999999999999


Q ss_pred             CCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCC--CCcCCCCCCCHHHHHHHcCCHhHHHHHHhC
Q psy4998         179 GAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN--VNATTNLGYTPLHQASQQGRVLIIDLLLGA  244 (318)
Q Consensus       179 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  244 (318)
                      |+|++.+|.+|+|.||..+..-..++.++++++|++  ...++..|.|||.+|++.|+.++.+.+++.
T Consensus       263 gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  263 GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            999999999999999999999999999999999999  888999999999999999999999999998

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.78  E-value=1.6e-17  Score=118.43  Aligned_cols=123  Identities=44%  Similarity=0.762  Sum_probs=98.8

Q ss_pred             cCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhc
Q psy4998         120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHF  199 (318)
Q Consensus       120 ~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~  199 (318)
                      +..|.|||+.|+..++.+++++|++.+...+..+..|.++++.|+..++.+++++|++.+..++..+..+.||+|.|+..
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARN   83 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            34577777777777777777777777776667777777888888888888888888888777777777788888888888


Q ss_pred             CCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHH
Q psy4998         200 GQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL  242 (318)
Q Consensus       200 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  242 (318)
                      ++.+++++|+++|.+++..+..+.||+++|+..++.+++++|+
T Consensus        84 ~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          84 GNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            8888888888888888888888888888888888888888874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.77  E-value=7.3e-18  Score=112.28  Aligned_cols=86  Identities=37%  Similarity=0.570  Sum_probs=40.4

Q ss_pred             HHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHH
Q psy4998          61 LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVE  140 (318)
Q Consensus        61 l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  140 (318)
                      ||.|++.|+.+++++|++.+.+++.    |.+|||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            3444444444444444444443333    444555555555555555555544444444444445555555555555555


Q ss_pred             HHHHcCCCCC
Q psy4998         141 LLISKGANIE  150 (318)
Q Consensus       141 ~L~~~~~~~~  150 (318)
                      +|+++|++++
T Consensus        77 ~Ll~~g~~~~   86 (89)
T PF12796_consen   77 LLLEHGADVN   86 (89)
T ss_dssp             HHHHTTT-TT
T ss_pred             HHHHcCCCCC
Confidence            5554444444

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195|consensus

Probab=99.75  E-value=5.6e-18  Score=129.05  Aligned_cols=122  Identities=38%  Similarity=0.545  Sum_probs=89.7

Q ss_pred             HHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCC
Q psy4998          75 LLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTR  154 (318)
Q Consensus        75 ~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~  154 (318)
                      ||-+...+.|.-|..|.+|||+|++.|+..+++.|+..|+.++..+....+|||+|+..|+.++++.|++..++++..+.
T Consensus        19 wld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavne   98 (448)
T KOG0195|consen   19 WLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNE   98 (448)
T ss_pred             EecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhc
Confidence            33344556666677777777777777777777777777777777777677777777777777777777777777777777


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHH
Q psy4998         155 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIA  196 (318)
Q Consensus       155 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a  196 (318)
                      .|++|||+||..|...+.+-|+..|+.++..+..|.||+..|
T Consensus        99 hgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   99 HGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             cCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            777777777777777777777777777777777777777655

>KOG4214|consensus

Probab=99.72  E-value=3.8e-17  Score=102.44  Aligned_cols=105  Identities=26%  Similarity=0.464  Sum_probs=94.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHH
Q psy4998         159 PLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII  238 (318)
Q Consensus       159 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~  238 (318)
                      .+.+++.+|..+-++..+..|.+++..- .|++|||+|+-.|..++++||+..|++++.+|..|-|||.-|+..|+.++|
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            4678899999999999998887766544 789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCHHHHHHH
Q psy4998         239 DLLLGAGAQPNATTNHGQTALNIAQK  264 (318)
Q Consensus       239 ~~Ll~~g~~~~~~~~~g~t~l~~A~~  264 (318)
                      ++||.+|+|.......|.+.+..+-.
T Consensus        84 klLL~~GAdrt~~~PdG~~~~eate~  109 (117)
T KOG4214|consen   84 KLLLQNGADRTIHAPDGTALIEATEE  109 (117)
T ss_pred             HHHHHcCcccceeCCCchhHHhhccH
Confidence            99999999999999999998877643

>KOG4214|consensus

Probab=99.65  E-value=1.1e-15  Score=95.93  Aligned_cols=102  Identities=28%  Similarity=0.372  Sum_probs=81.6

Q ss_pred             HHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHH
Q psy4998          60 ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMV  139 (318)
Q Consensus        60 ~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  139 (318)
                      -+.+++++|..+-++..+..|.+++.. ..|++|||+|+-.|+.++++||+..|++++..|..|.|||..|+-.||.+|+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            466788888888888888887666544 3678888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHcCCCCCccCCCCChHHHH
Q psy4998         140 ELLISKGANIEAKTRDGLTPLHC  162 (318)
Q Consensus       140 ~~L~~~~~~~~~~~~~~~~~l~~  162 (318)
                      ++|++.|++-......|.+.+..
T Consensus        84 klLL~~GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   84 KLLLQNGADRTIHAPDGTALIEA  106 (117)
T ss_pred             HHHHHcCcccceeCCCchhHHhh
Confidence            88888888877777777665543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.62  E-value=1e-14  Score=115.44  Aligned_cols=128  Identities=40%  Similarity=0.584  Sum_probs=103.3

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCC-----HHHHHHHHHcCC---CCCcCCCCC
Q psy4998         151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQ-----LNMVRYLVENGA---NVNATTNLG  222 (318)
Q Consensus       151 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~Ll~~g~---~~~~~~~~g  222 (318)
                      ..+..+.++++.++..+..+++.+++..+.+++.++..|.||+|.|+..++     .+++++|++.|+   ..+..+..|
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            344456677888888888888888888888887788888888888888888     888888888888   555558888


Q ss_pred             CCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcc
Q psy4998         223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVT  278 (318)
Q Consensus       223 ~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~  278 (318)
                      .||||+|+..|+.+++++|++.|++++..+..|.|+++.|...++.+++..+....
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            88888888888888888888888888888888888888888888888888887764

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.59  E-value=1.9e-15  Score=90.17  Aligned_cols=55  Identities=49%  Similarity=0.740  Sum_probs=31.6

Q ss_pred             HHHcC-CCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHH
Q psy4998         208 LVENG-ANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA  262 (318)
Q Consensus       208 Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A  262 (318)
                      |+++| .+++..|..|.||||+|+..|+.+++++|++.|++++.+|..|+||+++|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56777 88899999999999999999999999999999999999999999999987

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.56  E-value=7.9e-14  Score=110.34  Aligned_cols=127  Identities=39%  Similarity=0.594  Sum_probs=103.8

Q ss_pred             ccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCC-----HHHHHHHHHcCC---CCcCCCCCCC
Q psy4998         119 QAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGH-----DNVIDILIEKGA---ALYSKTKAGF  190 (318)
Q Consensus       119 ~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~-----~~~~~~ll~~~~---~~~~~~~~~~  190 (318)
                      .+..+.++++.++..+...++++++..+.+++..+..|.|++|+|+..++     .++++.|++.|+   ..+..+..|.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~  148 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN  148 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCC
Confidence            33446677777777777777777777777777777778888888888877     888888888888   4455588888


Q ss_pred             cHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCC
Q psy4998         191 TPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG  245 (318)
Q Consensus       191 t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g  245 (318)
                      ||+|+|+..|+.+++++|++.|++++..+..|.|+++.|+..++.++++.++..+
T Consensus       149 tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         149 TPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             chhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            9999999888888889999888888888888999999999999999999888875

>KOG1710|consensus

Probab=99.56  E-value=5e-14  Score=107.56  Aligned_cols=123  Identities=27%  Similarity=0.313  Sum_probs=111.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCC-CCCCCHHHHHHHcCC
Q psy4998         156 GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATT-NLGYTPLHQASQQGR  234 (318)
Q Consensus       156 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~l~~A~~~~~  234 (318)
                      ..++|.-++..|..+-+..|+..--.++.+|.+|.++|..|+..|+.++++.|+++|+|+|... ..+.|||++|+..|+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn   91 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN   91 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC
Confidence            3468889999999998888887756688899999999999999999999999999999998654 468999999999999


Q ss_pred             HhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcc
Q psy4998         235 VLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVT  278 (318)
Q Consensus       235 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~  278 (318)
                      .++.++|++.|+.+...|.-|+|+-+.|+--|+-++|..+-.+.
T Consensus        92 ~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~~  135 (396)
T KOG1710|consen   92 QDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNHI  135 (396)
T ss_pred             chHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhccc
Confidence            99999999999999999999999999999999999998886553

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.55  E-value=4.6e-14  Score=126.99  Aligned_cols=104  Identities=32%  Similarity=0.370  Sum_probs=73.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHH
Q psy4998         159 PLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII  238 (318)
Q Consensus       159 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~  238 (318)
                      .|+.|+..|+.+.+++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv  164 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV  164 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence            36666777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHhC-------CCCCCCCCCCCCCHHHHH
Q psy4998         239 DLLLGA-------GAQPNATTNHGQTALNIA  262 (318)
Q Consensus       239 ~~Ll~~-------g~~~~~~~~~g~t~l~~A  262 (318)
                      ++|+++       |++++..+..|.+|+..+
T Consensus       165 ~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        165 QLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            777776       666666666666555444

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.55  E-value=1.8e-14  Score=85.60  Aligned_cols=52  Identities=44%  Similarity=0.729  Sum_probs=23.7

Q ss_pred             CcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHH
Q psy4998         190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL  241 (318)
Q Consensus       190 ~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  241 (318)
                      .||+|.|+..|+.+++++|+++|.+++.+|..|.||||+|+..|+.+++++|
T Consensus         2 ~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    2 RTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            4455555555555555555555555555555555555555555555555554

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.52  E-value=3.4e-14  Score=84.39  Aligned_cols=54  Identities=43%  Similarity=0.622  Sum_probs=46.2

Q ss_pred             CCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhh
Q psy4998         222 GYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLK  275 (318)
Q Consensus       222 g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~  275 (318)
                      |.||||+|+..|+.+++++|+++|+|++.+|..|.||+|+|+..|+.+++++|.
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999999999999999999999999999999999999999999999983

...

>KOG0515|consensus

Probab=99.50  E-value=1.2e-13  Score=113.76  Aligned_cols=120  Identities=31%  Similarity=0.351  Sum_probs=105.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhH
Q psy4998         158 TPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLI  237 (318)
Q Consensus       158 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  237 (318)
                      ..|.-|+..|.+++|+.++..-.|+...+..|.|+||-|++.|+.+||+||++.|+++|..|.+|+||||+|+..+++.+
T Consensus       552 aLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHH
Confidence            34566888899999999998888888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCC-CCCCCCHHHHH--HHcCCHHHHHHhhhc
Q psy4998         238 IDLLLGAGAQPNAT-TNHGQTALNIA--QKLGYISVIETLKIV  277 (318)
Q Consensus       238 ~~~Ll~~g~~~~~~-~~~g~t~l~~A--~~~~~~~~~~~l~~~  277 (318)
                      ++.|++.|+-+... =..+.|+++-.  .+.|+..+.++|-..
T Consensus       632 ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  632 CKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             HHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            99999999988654 23467888876  566788888888544

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.47  E-value=5.4e-14  Score=83.86  Aligned_cols=55  Identities=47%  Similarity=0.730  Sum_probs=30.9

Q ss_pred             HHHcC-CCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Q psy4998         175 LIEKG-AALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQA  229 (318)
Q Consensus       175 ll~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A  229 (318)
                      |+++| .+++..+..|.||||+|+..|+.+++++|++.|++++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45666 77888888899999999999999999999988999999999999999886

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.43  E-value=1.3e-12  Score=117.85  Aligned_cols=103  Identities=31%  Similarity=0.428  Sum_probs=82.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHH
Q psy4998          93 PLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVI  172 (318)
Q Consensus        93 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  172 (318)
                      .|+.|+..|+.++++.|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv  164 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV  164 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence            57778888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHc-------CCCCcCCCCCCCcHhHH
Q psy4998         173 DILIEK-------GAALYSKTKAGFTPLHI  195 (318)
Q Consensus       173 ~~ll~~-------~~~~~~~~~~~~t~l~~  195 (318)
                      ++|+++       +++.+..+..|.+|+..
T Consensus       165 ~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~  194 (664)
T PTZ00322        165 QLLSRHSQCHFELGANAKPDSFTGKPPSLE  194 (664)
T ss_pred             HHHHhCCCcccccCCCCCccccCCCCccch
Confidence            888877       66666666666666543

>KOG0515|consensus

Probab=99.41  E-value=1.5e-12  Score=107.56  Aligned_cols=118  Identities=30%  Similarity=0.400  Sum_probs=104.6

Q ss_pred             HHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHH
Q psy4998         127 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVR  206 (318)
Q Consensus       127 l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  206 (318)
                      |.-|+..|-+++++..+..-.|+...+..|.|+||.|+..|+.+||++|++.|+++|..|..|+||||.|+..+++.+++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence            45578889999999999888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCC-cCCCCCCCHHHHH--HHcCCHhHHHHHHhC
Q psy4998         207 YLVENGANVN-ATTNLGYTPLHQA--SQQGRVLIIDLLLGA  244 (318)
Q Consensus       207 ~Ll~~g~~~~-~~~~~g~t~l~~A--~~~~~~~~~~~Ll~~  244 (318)
                      .|++.|+-+- .+-.++.|+...+  .+.|+..+.+||..-
T Consensus       634 qLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  634 QLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             HHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            9999998764 3445788998877  456788999999653

>KOG1710|consensus

Probab=99.35  E-value=1.4e-11  Score=94.36  Aligned_cols=116  Identities=24%  Similarity=0.293  Sum_probs=83.4

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhc----CCCCCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCC-CCCCchHHHHHHHcCCH
Q psy4998          29 FTPLAVAMQQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVK-SNSHFTPLHIAAHYGNT  103 (318)
Q Consensus        29 ~t~l~~A~~~g~~~~~~~ll~~----~~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~-~~~~~~~l~~a~~~~~~  103 (318)
                      .+||..++..|..+-+..|+..    ...+..|.++|..|+..|+.++++.|++.|+|+|.. +..++||||.|+.+|+.
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~   92 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQ   92 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCc
Confidence            3577777777777777777664    233666777777777777777777777777777653 34567777777777777


Q ss_pred             HHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHH
Q psy4998         104 NIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLIS  144 (318)
Q Consensus       104 ~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~  144 (318)
                      ++.+.|++.|+.....+..|+|+-.+|+.-|+.+|+..+-.
T Consensus        93 dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   93 DVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             hHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            77777777777777777777777777777777777766543

>KOG0783|consensus

Probab=99.07  E-value=9e-11  Score=102.27  Aligned_cols=83  Identities=25%  Similarity=0.495  Sum_probs=58.4

Q ss_pred             CCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCC-CCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHH
Q psy4998         149 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK-AGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLH  227 (318)
Q Consensus       149 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~  227 (318)
                      .+..|..|+++||+++..+..++++||+++|++++.+|. .|.||||.|+.+|+++++..|+++|..+...|.+|.+||+
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            456666777777777777777777777777777766654 4677777777777777777777777777777777777776


Q ss_pred             HHHH
Q psy4998         228 QASQ  231 (318)
Q Consensus       228 ~A~~  231 (318)
                      ..++
T Consensus       125 ~~~r  128 (1267)
T KOG0783|consen  125 FLSR  128 (1267)
T ss_pred             HHhh
Confidence            6554

>KOG0818|consensus

Probab=99.05  E-value=1e-09  Score=90.39  Aligned_cols=85  Identities=33%  Similarity=0.422  Sum_probs=78.6

Q ss_pred             HhHHHhhcCCHHHHHHHHHcCCCCCcCCCC-CCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH
Q psy4998         192 PLHIASHFGQLNMVRYLVENGANVNATTNL-GYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISV  270 (318)
Q Consensus       192 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  270 (318)
                      -||.+++.++.+..-.|+..|++.|..+.+ |.||||.|++.|+.--+++|+-+|+|+...|.+|.||+.+|-..|+-++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            389999999999999999999999988764 9999999999999999999999999999999999999999999999998


Q ss_pred             HHHhhh
Q psy4998         271 IETLKI  276 (318)
Q Consensus       271 ~~~l~~  276 (318)
                      .+-|..
T Consensus       216 aeRl~e  221 (669)
T KOG0818|consen  216 AERLVE  221 (669)
T ss_pred             HHHHHH
Confidence            887754

>KOG0506|consensus

Probab=99.05  E-value=2.4e-10  Score=93.52  Aligned_cols=92  Identities=23%  Similarity=0.338  Sum_probs=86.4

Q ss_pred             CCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcC
Q psy4998         188 AGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA-GAQPNATTNHGQTALNIAQKLG  266 (318)
Q Consensus       188 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~  266 (318)
                      .+..++++|++.|++..++.+.-.|.|++.+|.+.+|+||.|+-.|+++++++|++. +.+++.+|..|+||++-|...+
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~  584 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFK  584 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcC
Confidence            345678999999999999999999999999999999999999999999999999997 8999999999999999999999


Q ss_pred             CHHHHHHhhhccc
Q psy4998         267 YISVIETLKIVTE  279 (318)
Q Consensus       267 ~~~~~~~l~~~~~  279 (318)
                      +.+++++|..+..
T Consensus       585 h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  585 HKEVVKLLEEAQY  597 (622)
T ss_pred             cHHHHHHHHHHhc
Confidence            9999999987755

>KOG0782|consensus

Probab=99.02  E-value=1.3e-09  Score=91.36  Aligned_cols=121  Identities=24%  Similarity=0.294  Sum_probs=103.6

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCC--CCcCCCCCCCHHHHHHHcCCHhH
Q psy4998         160 LHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN--VNATTNLGYTPLHQASQQGRVLI  237 (318)
Q Consensus       160 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~  237 (318)
                      +..|+..+.+-.++-...+|.++..++....+.||+|+..|+-++++|++++|..  ++..+..|.|+||.|+..++..+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            4445555555445555557778888888899999999999999999999999865  46677889999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcccc
Q psy4998         238 IDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTET  280 (318)
Q Consensus       238 ~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  280 (318)
                      ..+|++.|+.+...|..|.||-.-|.+.|..++..+|+.-..-
T Consensus       950 c~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~rq~y  992 (1004)
T KOG0782|consen  950 CQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQNY  992 (1004)
T ss_pred             HHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhhhch
Confidence            9999999999999999999999999999999999999866443

>PF13606 Ank_3: Ankyrin repeat

Probab=98.98  E-value=9.2e-10  Score=55.79  Aligned_cols=29  Identities=45%  Similarity=0.669  Sum_probs=21.5

Q ss_pred             CCCCHHHHHHHcCCHhHHHHHHhCCCCCC
Q psy4998         221 LGYTPLHQASQQGRVLIIDLLLGAGAQPN  249 (318)
Q Consensus       221 ~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~  249 (318)
                      +|+||||+|++.|+.+++++|+++|+|++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            36777777777777777777777777765

>KOG0783|consensus

Probab=98.91  E-value=7.8e-10  Score=96.60  Aligned_cols=83  Identities=29%  Similarity=0.427  Sum_probs=71.6

Q ss_pred             CcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCC-CCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHH
Q psy4998         182 LYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTN-LGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALN  260 (318)
Q Consensus       182 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~  260 (318)
                      .+.+|..|++++|+++..+..++++||+++|+++..+|. .|.||||-|+..|+.+++-+||.+|+.+.++|+.|.+||+
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            456778888888888888888888888888888888876 5888898888888888888888888888888888888888


Q ss_pred             HHHH
Q psy4998         261 IAQK  264 (318)
Q Consensus       261 ~A~~  264 (318)
                      ..++
T Consensus       125 ~~~r  128 (1267)
T KOG0783|consen  125 FLSR  128 (1267)
T ss_pred             HHhh
Confidence            8887

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.89  E-value=2.9e-09  Score=55.73  Aligned_cols=32  Identities=50%  Similarity=0.622  Sum_probs=22.5

Q ss_pred             CCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCC
Q psy4998         221 LGYTPLHQASQQGRVLIIDLLLGAGAQPNATT  252 (318)
Q Consensus       221 ~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~  252 (318)
                      +|.||||+|+..|+.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            36677777777777777777777777776654

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.84  E-value=5e-09  Score=53.06  Aligned_cols=29  Identities=52%  Similarity=0.950  Sum_probs=23.4

Q ss_pred             CCCcHhHHHhhcCCHHHHHHHHHcCCCCC
Q psy4998         188 AGFTPLHIASHFGQLNMVRYLVENGANVN  216 (318)
Q Consensus       188 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~  216 (318)
                      +|+||||+|+..|+.+++++|+++|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            47788888888888888888888888776

>KOG0782|consensus

Probab=98.81  E-value=2.6e-08  Score=83.77  Aligned_cols=118  Identities=23%  Similarity=0.314  Sum_probs=102.4

Q ss_pred             HHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCC--CcCCCCCCCcHhHHHhhcCCHHH
Q psy4998         127 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA--LYSKTKAGFTPLHIASHFGQLNM  204 (318)
Q Consensus       127 l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~--~~~~~~~~~t~l~~a~~~~~~~~  204 (318)
                      +..|+..+.+--++.....|.++-.++....+.||+|+..|+-+++++++++|..  ++..+..|.|+||.|+..++..+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            3445555555556666667888888888899999999999999999999999864  35677889999999999999999


Q ss_pred             HHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhC
Q psy4998         205 VRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA  244 (318)
Q Consensus       205 ~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  244 (318)
                      +++|.+.|+.+..+|..|.||-.-|-+.|+.+++.+|-..
T Consensus       950 c~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  950 CQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            9999999999999999999999999999999999998654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.74  E-value=2e-08  Score=52.52  Aligned_cols=32  Identities=41%  Similarity=0.718  Sum_probs=26.7

Q ss_pred             CCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCC
Q psy4998         188 AGFTPLHIASHFGQLNMVRYLVENGANVNATT  219 (318)
Q Consensus       188 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  219 (318)
                      +|.||||+|+..++.+++++|+++|++++.++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            47888888888888888888888888888765

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818|consensus

Probab=98.72  E-value=8.7e-08  Score=79.29  Aligned_cols=85  Identities=31%  Similarity=0.392  Sum_probs=56.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcCCC-CCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhH
Q psy4998         159 PLHCAARSGHDNVIDILIEKGAALYSKT-KAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLI  237 (318)
Q Consensus       159 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  237 (318)
                      -||.+++.++.+..-.|+..|++.|... ..|.||||.|++.|+..-+++|+-.|+|++..|..|.||+.+|-..|+-++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            3666667777766666666666666543 346677777777777777777777777777777777777777766666555


Q ss_pred             HHHHHh
Q psy4998         238 IDLLLG  243 (318)
Q Consensus       238 ~~~Ll~  243 (318)
                      .+-|++
T Consensus       216 aeRl~e  221 (669)
T KOG0818|consen  216 AERLVE  221 (669)
T ss_pred             HHHHHH
Confidence            555544

>KOG0506|consensus

Probab=98.71  E-value=2.6e-08  Score=81.93  Aligned_cols=92  Identities=24%  Similarity=0.346  Sum_probs=85.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcC
Q psy4998         155 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN-GANVNATTNLGYTPLHQASQQG  233 (318)
Q Consensus       155 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~  233 (318)
                      .+...+.+|+..|....++.+.-.|.+++.+|.+.+|+||.|+.-|+++++++|++. +.+++.+|.+|+|||.-|...+
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~  584 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFK  584 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcC
Confidence            344678999999999999999999999999999999999999999999999999986 8999999999999999999999


Q ss_pred             CHhHHHHHHhCCC
Q psy4998         234 RVLIIDLLLGAGA  246 (318)
Q Consensus       234 ~~~~~~~Ll~~g~  246 (318)
                      +.+++++|.+...
T Consensus       585 h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  585 HKEVVKLLEEAQY  597 (622)
T ss_pred             cHHHHHHHHHHhc
Confidence            9999999988743

>KOG0522|consensus

Probab=98.69  E-value=6.7e-08  Score=80.77  Aligned_cols=82  Identities=27%  Similarity=0.315  Sum_probs=44.2

Q ss_pred             hHHHhhcCCHHHHHHHH--HcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH
Q psy4998         193 LHIASHFGQLNMVRYLV--ENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISV  270 (318)
Q Consensus       193 l~~a~~~~~~~~~~~Ll--~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  270 (318)
                      +|.++.....+-+...+  +.+..++..|..|.||||+|+..|+.+.++.|+..|+++.++|+.|++|+|-|+..|+.++
T Consensus        24 lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~  103 (560)
T KOG0522|consen   24 LHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQI  103 (560)
T ss_pred             cchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHH
Confidence            55555554444443322  2234455555555666666666666666666666666666666666666666666665544


Q ss_pred             HHHh
Q psy4998         271 IETL  274 (318)
Q Consensus       271 ~~~l  274 (318)
                      +..+
T Consensus       104 i~~v  107 (560)
T KOG0522|consen  104 ITEV  107 (560)
T ss_pred             HHHH
Confidence            4433

>KOG0705|consensus

Probab=98.64  E-value=1e-07  Score=80.36  Aligned_cols=88  Identities=30%  Similarity=0.335  Sum_probs=77.0

Q ss_pred             hHHHhhcCCHHHHHHHHHcCCCC--C--cCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Q psy4998         193 LHIASHFGQLNMVRYLVENGANV--N--ATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYI  268 (318)
Q Consensus       193 l~~a~~~~~~~~~~~Ll~~g~~~--~--~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  268 (318)
                      |..|+...++..+-+|+.+|...  +  ..+.+|+|+||+|+..|++.+.++|+=+|+|+...|..|+|+|.||-+.|..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            56777778888899999997543  2  3345689999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcccc
Q psy4998         269 SVIETLKIVTET  280 (318)
Q Consensus       269 ~~~~~l~~~~~~  280 (318)
                      |+++.|.+++-.
T Consensus       708 ec~d~llq~gcp  719 (749)
T KOG0705|consen  708 ECIDVLLQYGCP  719 (749)
T ss_pred             HHHHHHHHcCCC
Confidence            999999998754

>KOG3609|consensus

Probab=98.58  E-value=1.5e-07  Score=83.15  Aligned_cols=116  Identities=21%  Similarity=0.190  Sum_probs=95.0

Q ss_pred             CccccChHHHHHHHHhcC----CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCChhHHHHHHhCCCHHHHHHH
Q psy4998           1 MAAQENHDGVVRYLLSKG----GNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALL   76 (318)
Q Consensus         1 lA~~~g~~~~v~~Ll~~g----~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~l   76 (318)
                      +|+.+|+.-.|+..+++.    .++++.|.-|.++|+.|+.+.+.|+.++|++.....   ..+|..|+..|.+++++.+
T Consensus        31 ~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~---gdALL~aI~~~~v~~VE~l  107 (822)
T KOG3609|consen   31 LAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE---GDALLLAIAVGSVPLVELL  107 (822)
T ss_pred             HHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc---chHHHHHHHHHHHHHHHHH
Confidence            378899999999999864    367888999999999999999999999999876544   4789999999999999999


Q ss_pred             HhCCCCCC----------CCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccc
Q psy4998          77 LENDHSPD----------VKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ  119 (318)
Q Consensus        77 l~~~~~~~----------~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~  119 (318)
                      +.+.....          ..-..+.|||..||..++.||++.|+++|+.+..+
T Consensus       108 l~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen  108 LVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             HhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            98744321          11234679999999999999999999998876554

>KOG2384|consensus

Probab=98.54  E-value=2.6e-07  Score=66.98  Aligned_cols=73  Identities=21%  Similarity=0.278  Sum_probs=59.6

Q ss_pred             CCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCC
Q psy4998         179 GAALYSKTKAGFTPLHIASHFGQLNMVRYLVENG-ANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNAT  251 (318)
Q Consensus       179 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~  251 (318)
                      +.++|.+|..|+|+++.|++-|+.+.+.||+.+| +++...|..+.+++.+|-+.|..++++.|.++-.+-+..
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p   75 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHP   75 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCc
Confidence            3567788888888888888888888888888888 888888888888888888888888888888875554443

>KOG3609|consensus

Probab=98.53  E-value=6.2e-07  Score=79.45  Aligned_cols=125  Identities=18%  Similarity=0.266  Sum_probs=85.4

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhccC----CcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHH
Q psy4998          90 HFTPLHIAAHYGNTNIAELLIQKHA----NVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAAR  165 (318)
Q Consensus        90 ~~~~l~~a~~~~~~~~~~~ll~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~  165 (318)
                      +..-+..|+..|+...++..++...    +++..|.-|.++++.|+.+.+.++.++|++++...       ..+|..|+.
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~   97 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIA   97 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHH
Confidence            3345667888888888888776543    35556677888888888888888888888775433       247888888


Q ss_pred             cCCHHHHHHHHHcCCCCcC----------CCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCC
Q psy4998         166 SGHDNVIDILIEKGAALYS----------KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNL  221 (318)
Q Consensus       166 ~~~~~~~~~ll~~~~~~~~----------~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~  221 (318)
                      .+..+.++.++.+......          .-.-+.||+..||..+++|+++.|+.+|+.+......
T Consensus        98 ~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH~~  163 (822)
T KOG3609|consen   98 VGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPHDI  163 (822)
T ss_pred             HHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCccc
Confidence            8888888888876443211          1123556777777777777777777777776655443

>KOG0705|consensus

Probab=98.52  E-value=4.9e-07  Score=76.41  Aligned_cols=91  Identities=27%  Similarity=0.310  Sum_probs=79.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCc----CCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC
Q psy4998         159 PLHCAARSGHDNVIDILIEKGAALY----SKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR  234 (318)
Q Consensus       159 ~l~~a~~~~~~~~~~~ll~~~~~~~----~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  234 (318)
                      -|.-|+.......+-+|+.+|....    .-+..|.|+||+||..|++.+.++|+-+|+|+..+|..|.|+|.||-..|.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            4666777778888889999886532    234568999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHhCCCCCC
Q psy4998         235 VLIIDLLLGAGAQPN  249 (318)
Q Consensus       235 ~~~~~~Ll~~g~~~~  249 (318)
                      .+++..|+.+|+...
T Consensus       707 qec~d~llq~gcp~e  721 (749)
T KOG0705|consen  707 QECIDVLLQYGCPDE  721 (749)
T ss_pred             HHHHHHHHHcCCCcc
Confidence            999999999998653

>KOG2384|consensus

Probab=98.49  E-value=3.9e-07  Score=66.09  Aligned_cols=65  Identities=29%  Similarity=0.363  Sum_probs=37.5

Q ss_pred             CCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhc
Q psy4998         213 ANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG-AQPNATTNHGQTALNIAQKLGYISVIETLKIV  277 (318)
Q Consensus       213 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  277 (318)
                      .++|.+|..|+|+++.|+..|+.+.+.||+.+| +.+...|..|.+++.+|.+.|..+++..|..+
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            345555555555555555555555555555555 55555555555555555555555555555554

>KOG0521|consensus

Probab=98.44  E-value=2.7e-07  Score=83.67  Aligned_cols=91  Identities=37%  Similarity=0.537  Sum_probs=84.3

Q ss_pred             CCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Q psy4998         187 KAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLG  266 (318)
Q Consensus       187 ~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  266 (318)
                      ..|.+++|.|+..+..-++++|++.|+++|..+..|.+|+|.+...|+...+..|+++|++++..+..|.+|+.+|....
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             CHHHHHHhhhc
Q psy4998         267 YISVIETLKIV  277 (318)
Q Consensus       267 ~~~~~~~l~~~  277 (318)
                      +.+.+-++...
T Consensus       734 ~~d~~~l~~l~  744 (785)
T KOG0521|consen  734 NADIVLLLRLA  744 (785)
T ss_pred             cccHHHHHhhh
Confidence            77776666555

>KOG0522|consensus

Probab=98.44  E-value=7.2e-07  Score=74.78  Aligned_cols=86  Identities=30%  Similarity=0.433  Sum_probs=56.4

Q ss_pred             HHHHHHHcCcHHHHHHHHH--cCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHH
Q psy4998         126 PLHVACKWGKVAMVELLIS--KGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLN  203 (318)
Q Consensus       126 ~l~~a~~~~~~~~~~~L~~--~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  203 (318)
                      |+|.+......+-+...+.  ....++..|..|+||||.|+..|+.+.+..|+..|+++..+++.|++|||.|+..|+.+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            4666666655554443322  23445566666777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHc
Q psy4998         204 MVRYLVEN  211 (318)
Q Consensus       204 ~~~~Ll~~  211 (318)
                      ++..++.+
T Consensus       103 ~i~~vlr~  110 (560)
T KOG0522|consen  103 IITEVLRH  110 (560)
T ss_pred             HHHHHHHH
Confidence            66666653

>KOG0511|consensus

Probab=98.42  E-value=1.4e-06  Score=69.97  Aligned_cols=68  Identities=29%  Similarity=0.360  Sum_probs=42.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHH
Q psy4998         159 PLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPL  226 (318)
Q Consensus       159 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l  226 (318)
                      -|..||+.|..+.++.|++.|.++|.++....+||.+|+..|+.+++++|+++|+-...-..+|..++
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~  106 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCH  106 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhh
Confidence            45566666666666666666666666666666666666666666666666666665544444454443

>KOG0521|consensus

Probab=98.22  E-value=1.4e-06  Score=79.23  Aligned_cols=88  Identities=31%  Similarity=0.433  Sum_probs=80.6

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Q psy4998         154 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG  233 (318)
Q Consensus       154 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  233 (318)
                      ..|.+++|.|+..+..-..++|+++|++++..+..|.+|+|.+...|+...+..|+++|++.+..+..|.+|+++|....
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc
Confidence            35778999999999999999999999999999999999999999999999999999999999999999999999998776


Q ss_pred             CHhHHHHH
Q psy4998         234 RVLIIDLL  241 (318)
Q Consensus       234 ~~~~~~~L  241 (318)
                      +.+++-++
T Consensus       734 ~~d~~~l~  741 (785)
T KOG0521|consen  734 NADIVLLL  741 (785)
T ss_pred             cccHHHHH
Confidence            65555444

>KOG0511|consensus

Probab=98.13  E-value=1.1e-05  Score=65.07  Aligned_cols=69  Identities=17%  Similarity=0.209  Sum_probs=53.7

Q ss_pred             hHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHH
Q psy4998          59 PALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPL  127 (318)
Q Consensus        59 ~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l  127 (318)
                      .-|..|++.|+++.+++|++.|.++|..|....+||.+|+..|+.+++++|+++|+-.....-.|..++
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~  106 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCH  106 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhh
Confidence            457788888888888888888888888888888888888888888888888888876654444555443

>KOG0520|consensus

Probab=98.09  E-value=5.6e-06  Score=75.19  Aligned_cols=128  Identities=23%  Similarity=0.296  Sum_probs=93.9

Q ss_pred             CccCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHH
Q psy4998         150 EAKTRDGLTPLHCAARSGHDNVIDILIEK-GAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQ  228 (318)
Q Consensus       150 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~  228 (318)
                      ......+.+.+|.++..+..-+++.+++. +......+..|.-.+|+++..+..-.+....-.|..++.+|..|+||||+
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccch
Confidence            34455677888888888888888888875 55555566666667777555443333333334678888888889999999


Q ss_pred             HHHcCCHhHHHHHHhCCCCC------CCCCCCCCCHHHHHHHcCCHHHHHHhhhc
Q psy4998         229 ASQQGRVLIIDLLLGAGAQP------NATTNHGQTALNIAQKLGYISVIETLKIV  277 (318)
Q Consensus       229 A~~~~~~~~~~~Ll~~g~~~------~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  277 (318)
                      |...|+..++.-|.+.|+++      +.....|.|+...|...|+..+..+|...
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999998888776543      44455688999999999988888888765

>KOG0520|consensus

Probab=97.83  E-value=3e-05  Score=70.69  Aligned_cols=125  Identities=26%  Similarity=0.286  Sum_probs=86.4

Q ss_pred             cCCCChHHHHHHHcCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhh
Q psy4998         120 AKHNITPLHVACKWGKVAMVELLISK-GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASH  198 (318)
Q Consensus       120 ~~~~~~~l~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~  198 (318)
                      ...|.+.+|+++..+....++.+++. +......+..+...+|.++..|..-.+..+.-.|..++.+|..|+||||.|+.
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~  650 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAF  650 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHhh
Confidence            34567788888888887777777775 55555666666677777555554444444444667777788888888888888


Q ss_pred             cCCHHHHHHHHHcCCCCC------cCCCCCCCHHHHHHHcCCHhHHHHHHhC
Q psy4998         199 FGQLNMVRYLVENGANVN------ATTNLGYTPLHQASQQGRVLIIDLLLGA  244 (318)
Q Consensus       199 ~~~~~~~~~Ll~~g~~~~------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  244 (318)
                      +|+..++..|++.|++..      .....|.|+-.+|-.+|+..+.-+|-++
T Consensus       651 ~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  651 RGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            888888888887765432      2334578888888888877777776654

>KOG2505|consensus

Probab=97.81  E-value=4.1e-05  Score=64.07  Aligned_cols=75  Identities=23%  Similarity=0.236  Sum_probs=61.4

Q ss_pred             CCHHHHHHHHHcCCCCCcC------CCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q psy4998         200 GQLNMVRYLVENGANVNAT------TNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIET  273 (318)
Q Consensus       200 ~~~~~~~~Ll~~g~~~~~~------~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~  273 (318)
                      .-...+++|.+++++.|..      +.-..|+||+|+..|..++|.+||+.|+||..+|..|.||..++.   +.++-..
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk~~  478 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVKSI  478 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHHHH
Confidence            3467889999998776532      333679999999999999999999999999999999999999976   5566666


Q ss_pred             hhhc
Q psy4998         274 LKIV  277 (318)
Q Consensus       274 l~~~  277 (318)
                      +...
T Consensus       479 F~a~  482 (591)
T KOG2505|consen  479 FIAR  482 (591)
T ss_pred             HHHH
Confidence            6533

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.65  E-value=0.0012  Score=48.41  Aligned_cols=138  Identities=13%  Similarity=0.052  Sum_probs=69.4

Q ss_pred             hHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHH
Q psy4998          59 PALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAM  138 (318)
Q Consensus        59 ~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~  138 (318)
                      ..+..|+..+-.++++..-+...+.   -...++.+..||+..+.++++|+-++-.-.     +-.+.+..|....+.++
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~qnL~i~-----~~~~iFdIA~~~kDlsL  119 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQNLHIY-----NPEDIFDIAFAKKDLSL  119 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhhccCCC-----CchhhhhhhhhccchhH
Confidence            3445566666666655554432210   122345566666666666666663322111     11234555555555544


Q ss_pred             HH----HHHHcCCCCCccCC--CCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHH
Q psy4998         139 VE----LLISKGANIEAKTR--DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE  210 (318)
Q Consensus       139 ~~----~L~~~~~~~~~~~~--~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  210 (318)
                      ..    ++.++...-...+.  --..-|..|+..|-...+.-.+++|.+++.      ++|..|+.+++..++.+++.
T Consensus       120 yslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  120 YSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            21    11122111100000  011245667777777777777777665532      57777777777777777653

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.51  E-value=0.0014  Score=47.93  Aligned_cols=153  Identities=14%  Similarity=0.107  Sum_probs=106.8

Q ss_pred             hHHHHHHHHhc--CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC-CCChhHHHHHHhCCCHHHHHHHHhCCCCC
Q psy4998           7 HDGVVRYLLSK--GGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKG-KVKLPALHIAAKKDDCKAAALLLENDHSP   83 (318)
Q Consensus         7 ~~~~v~~Ll~~--g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~~-~~~~~~l~~A~~~~~~~~~~~ll~~~~~~   83 (318)
                      +.++++...+.  +++..       -.+..|++.+-+.+++..-+..... ....+.+..||+..+.++++|+-.+-   
T Consensus        30 dp~~FEkCH~l~~~c~~~-------CLl~HAVk~nmL~ILqkyke~L~~~~~~~q~LFElAC~~qkydiV~WI~qnL---   99 (192)
T PF03158_consen   30 DPETFEKCHELNNSCDMW-------CLLYHAVKYNMLSILQKYKEDLENERYLNQELFELACEEQKYDIVKWIGQNL---   99 (192)
T ss_pred             CHHHHHHHHHhhccCCHH-------HHHHHHHHcCcHHHHHHHHHHhhcchhHHHHHHHHHHHHccccHHHHHhhcc---
Confidence            45556655544  33333       3788999999999999998875544 45567889999999999999994432   


Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHH----HHHhccCCcccccCC--CChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCC
Q psy4998          84 DVKSNSHFTPLHIAAHYGNTNIAE----LLIQKHANVNNQAKH--NITPLHVACKWGKVAMVELLISKGANIEAKTRDGL  157 (318)
Q Consensus        84 ~~~~~~~~~~l~~a~~~~~~~~~~----~ll~~~~~~~~~~~~--~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~  157 (318)
                        .-.+-.+.+..|....+.++..    +++++.......+..  -..-+..|+..|-...+...+++|.+.+.      
T Consensus       100 --~i~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------  171 (192)
T PF03158_consen  100 --HIYNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------  171 (192)
T ss_pred             --CCCCchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------
Confidence              1222335788899888887532    233332222111110  11346789999999999999999887653      


Q ss_pred             hHHHHHHHcCCHHHHHHHHH
Q psy4998         158 TPLHCAARSGHDNVIDILIE  177 (318)
Q Consensus       158 ~~l~~a~~~~~~~~~~~ll~  177 (318)
                      ++|..|+..++..++.+++.
T Consensus       172 ~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  172 IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHhhHHHHHHHhhc
Confidence            68999999999999998874

These proteins may be involved in promoting survival of infected macrophages [].

>smart00248 ANK ankyrin repeats

Probab=97.28  E-value=0.00068  Score=33.34  Aligned_cols=27  Identities=44%  Similarity=0.751  Sum_probs=18.2

Q ss_pred             CCCHHHHHHHcCCHhHHHHHHhCCCCC
Q psy4998         222 GYTPLHQASQQGRVLIIDLLLGAGAQP  248 (318)
Q Consensus       222 g~t~l~~A~~~~~~~~~~~Ll~~g~~~  248 (318)
                      |.||+|+|+..++.++++.|+++|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            556777777777777777777666554

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.89  E-value=0.0021  Score=31.48  Aligned_cols=27  Identities=44%  Similarity=0.871  Sum_probs=19.5

Q ss_pred             CCcHhHHHhhcCCHHHHHHHHHcCCCC
Q psy4998         189 GFTPLHIASHFGQLNMVRYLVENGANV  215 (318)
Q Consensus       189 ~~t~l~~a~~~~~~~~~~~Ll~~g~~~  215 (318)
                      |.||+|.|+..++.+++++|++.|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            566777777777777777777776654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=96.79  E-value=0.0051  Score=52.08  Aligned_cols=75  Identities=20%  Similarity=0.253  Sum_probs=58.6

Q ss_pred             HcCCHHHHHHHHHcCCCCcC------CCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHH
Q psy4998         165 RSGHDNVIDILIEKGAALYS------KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII  238 (318)
Q Consensus       165 ~~~~~~~~~~ll~~~~~~~~------~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~  238 (318)
                      ...-...+++|.+++.+.|.      .+.---|+||+|+..|.-+++.+||+.|+|+..+|..|.||+.++.   +.++-
T Consensus       400 k~~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk  476 (591)
T KOG2505|consen  400 KKPEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVK  476 (591)
T ss_pred             ccCchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHH
Confidence            33446788888888776643      2333568999999999999999999999999999999999999877   44444


Q ss_pred             HHHH
Q psy4998         239 DLLL  242 (318)
Q Consensus       239 ~~Ll  242 (318)
                      ..++
T Consensus       477 ~~F~  480 (591)
T KOG2505|consen  477 SIFI  480 (591)
T ss_pred             HHHH
Confidence            4444

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=96.71  E-value=0.004  Score=39.44  Aligned_cols=47  Identities=23%  Similarity=0.330  Sum_probs=27.9

Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCCCCChhHHHHHHhCCCHHHHHHHHhC
Q psy4998          30 TPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLEN   79 (318)
Q Consensus        30 t~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~ll~~   79 (318)
                      ..+..|+..|+.|+++.+++.+..+   ..++..|+...+.++++||+++
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~~---~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKPD---NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhccH---HHHHHHHHHHhhHHHHHHHHHh
Confidence            3456666666666666666544222   3456666666666666666664

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.58  E-value=0.016  Score=44.00  Aligned_cols=88  Identities=22%  Similarity=0.302  Sum_probs=39.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCcCCCCC----CCcHhHHH--hhcCCHHHHHHHHHcC-CCCCc---CCCCCCCHHH
Q psy4998         158 TPLHCAARSGHDNVIDILIEKGAALYSKTKA----GFTPLHIA--SHFGQLNMVRYLVENG-ANVNA---TTNLGYTPLH  227 (318)
Q Consensus       158 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~----~~t~l~~a--~~~~~~~~~~~Ll~~g-~~~~~---~~~~g~t~l~  227 (318)
                      +++.+++.++..+++.+|+.+.. ....+.-    +..-+.++  ....+..++++++++| +++|.   +-..|.|-|.
T Consensus       181 ~Am~~si~~~K~dva~~lls~f~-ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLD  259 (284)
T PF06128_consen  181 QAMWLSIGNAKEDVALYLLSKFN-FTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLD  259 (284)
T ss_pred             HHHHHHhcccHHHHHHHHHhhcc-eecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHH
Confidence            46666666666777777665421 0000100    00111111  1223344555555554 23331   1233555555


Q ss_pred             HHHHcCCHhHHHHHHhCCC
Q psy4998         228 QASQQGRVLIIDLLLGAGA  246 (318)
Q Consensus       228 ~A~~~~~~~~~~~Ll~~g~  246 (318)
                      -|+++++.+++.+||++|+
T Consensus       260 NA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  260 NAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             hHHhcCcHHHHHHHHHcCc
Confidence            5555555555555555554

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.03  E-value=0.081  Score=40.39  Aligned_cols=114  Identities=19%  Similarity=0.236  Sum_probs=75.9

Q ss_pred             HHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcC----CCCCccCCCCChHHHHHHH--c
Q psy4998          93 PLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKG----ANIEAKTRDGLTPLHCAAR--S  166 (318)
Q Consensus        93 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~----~~~~~~~~~~~~~l~~a~~--~  166 (318)
                      .|.-|+..-+.+-+.-++....       .-.+++.+++..+..+++.+|+..-    .++.... .+..-+.++..  .
T Consensus       156 sledAV~AsN~~~i~~~VtdKk-------dA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~-~~~ydieY~LS~h~  227 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKK-------DAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASME-KELYDIEYLLSEHS  227 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchH-------HHHHHHHHHhcccHHHHHHHHHhhcceecchhhhcC-cchhhHHHHHhhcC
Confidence            3556666666666555554321       2346788888888888988888751    1111111 12223444443  3


Q ss_pred             CCHHHHHHHHHcC-CCCcC---CCCCCCcHhHHHhhcCCHHHHHHHHHcCCC
Q psy4998         167 GHDNVIDILIEKG-AALYS---KTKAGFTPLHIASHFGQLNMVRYLVENGAN  214 (318)
Q Consensus       167 ~~~~~~~~ll~~~-~~~~~---~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  214 (318)
                      .+..++++++++| +++|.   +-+.|.|-|.-|+++++.+++.+|+++|+-
T Consensus       228 a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  228 ASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             CcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            4578899999988 45543   456799999999999999999999999973

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.78  E-value=0.035  Score=35.12  Aligned_cols=49  Identities=24%  Similarity=0.299  Sum_probs=36.6

Q ss_pred             ChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhc
Q psy4998          57 KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQK  112 (318)
Q Consensus        57 ~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  112 (318)
                      ....+..|+.+|+.++++.+++.+. ++      ...+..|+...+.++++||++.
T Consensus         6 t~~tl~~Ai~GGN~eII~~c~~~~~-~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    6 TKKTLEYAIIGGNFEIINICLKKNK-PD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             CHHHHHHHHhCCCHHHHHHHHHHhc-cH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            3467788888888888888886541 11      3578888888888888888876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=89.07  E-value=20  Score=33.73  Aligned_cols=75  Identities=13%  Similarity=0.092  Sum_probs=34.1

Q ss_pred             HHhhcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhC--CCCCCCCCCCCCCHHHHHHHcCCHHHH
Q psy4998         195 IASHFGQLNMVRYLVE-NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA--GAQPNATTNHGQTALNIAQKLGYISVI  271 (318)
Q Consensus       195 ~a~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~  271 (318)
                      .-++.|..+-+.-+++ .+..++..  .-.+.+.-+..+|+.+..+...+.  +.+++....+ ...+..-++.|+.+-+
T Consensus       471 ~l~r~G~~~eA~~~~~~~~~~p~~~--~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y-~~L~~~y~~~G~~~~A  547 (697)
T PLN03081        471 LLGREGLLDEAYAMIRRAPFKPTVN--MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY-VVLLNLYNSSGRQAEA  547 (697)
T ss_pred             HHHhcCCHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcch-HHHHHHHHhCCCHHHH
Confidence            3345555554444443 23222211  122334444577888877766654  3333322121 2334444566665433


Q ss_pred             H
Q psy4998         272 E  272 (318)
Q Consensus       272 ~  272 (318)
                      .
T Consensus       548 ~  548 (697)
T PLN03081        548 A  548 (697)
T ss_pred             H
Confidence            3

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=88.29  E-value=23  Score=33.38  Aligned_cols=180  Identities=12%  Similarity=0.053  Sum_probs=80.1

Q ss_pred             hHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchH-HHHHHHcCCHH----HHHHHHhccCCcccccCCCChHHHHHHHc
Q psy4998          59 PALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTP-LHIAAHYGNTN----IAELLIQKHANVNNQAKHNITPLHVACKW  133 (318)
Q Consensus        59 ~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~-l~~a~~~~~~~----~~~~ll~~~~~~~~~~~~~~~~l~~a~~~  133 (318)
                      +.+..-++.|+++-+..+++.-..++   ..-++. +...+..|..+    +++.+.+.|..++...  ..+.+..++..
T Consensus       365 ~Li~~y~k~G~~~~A~~vf~~m~~~d---~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T--~~~ll~a~~~~  439 (697)
T PLN03081        365 ALVDLYSKWGRMEDARNVFDRMPRKN---LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT--FLAVLSACRYS  439 (697)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCCCCC---eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHH--HHHHHHHHhcC
Confidence            34445555666666666655432222   122223 33333455543    3333444454443221  12233334445


Q ss_pred             CcHHHHHHHHH-----cCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCcCCCCCCCcHhHHHhhcCCHHHHHH
Q psy4998         134 GKVAMVELLIS-----KGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK-GAALYSKTKAGFTPLHIASHFGQLNMVRY  207 (318)
Q Consensus       134 ~~~~~~~~L~~-----~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  207 (318)
                      |..+-...+.+     +|..++..  .....+...++.|..+-+.-+++. +..++.  ..-.+.+..++..|+.+..+.
T Consensus       440 g~~~~a~~~f~~m~~~~g~~p~~~--~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~--~~~~~Ll~a~~~~g~~~~a~~  515 (697)
T PLN03081        440 GLSEQGWEIFQSMSENHRIKPRAM--HYACMIELLGREGLLDEAYAMIRRAPFKPTV--NMWAALLTACRIHKNLELGRL  515 (697)
T ss_pred             CcHHHHHHHHHHHHHhcCCCCCcc--chHhHHHHHHhcCCHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCcHHHHH
Confidence            55443333322     23333221  122345556677776655555543 222111  112233445557888888777


Q ss_pred             HHHcCCCCCcCCCCCCCH-HHHHHHcCCHh----HHHHHHhCCCC
Q psy4998         208 LVENGANVNATTNLGYTP-LHQASQQGRVL----IIDLLLGAGAQ  247 (318)
Q Consensus       208 Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~----~~~~Ll~~g~~  247 (318)
                      ..+.-..+...+....+. ...-+..|..+    +.+.+.+.|..
T Consensus       516 ~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~  560 (697)
T PLN03081        516 AAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS  560 (697)
T ss_pred             HHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence            666533333222222222 33345666654    44555556654

>PLN03218 maturation of RBCL 1; Provisional

Probab=86.13  E-value=14  Score=36.46  Aligned_cols=24  Identities=21%  Similarity=0.170  Sum_probs=11.1

Q ss_pred             HHHHHHcCCHhHHHHH----HhCCCCCC
Q psy4998         226 LHQASQQGRVLIIDLL----LGAGAQPN  249 (318)
Q Consensus       226 l~~A~~~~~~~~~~~L----l~~g~~~~  249 (318)
                      +...+..|..+.+..+    .+.|..++
T Consensus       761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd  788 (1060)
T PLN03218        761 LVASERKDDADVGLDLLSQAKEDGIKPN  788 (1060)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            3334455555444433    33455554

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=84.39  E-value=23  Score=29.55  Aligned_cols=246  Identities=9%  Similarity=0.056  Sum_probs=129.6

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhc-------CCCCCCChhHHHHHHhCCCHHHHHHHHhC--CCC-CCCCCCCCchH
Q psy4998          24 ATEDGFTPLAVAMQQGHDRVVAVLLEN-------DTKGKVKLPALHIAAKKDDCKAAALLLEN--DHS-PDVKSNSHFTP   93 (318)
Q Consensus        24 ~~~~~~t~l~~A~~~g~~~~~~~ll~~-------~~~~~~~~~~l~~A~~~~~~~~~~~ll~~--~~~-~~~~~~~~~~~   93 (318)
                      .+..|...+..+...+..+....+++.       -..+..|...+...+..+..+....+++.  |.- .-..+..|...
T Consensus        17 ~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~v   96 (322)
T cd07920          17 KDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRV   96 (322)
T ss_pred             CCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHHH
Confidence            455566677777777777666666654       12244566666666666666555444432  100 01234455555


Q ss_pred             HHHHHHcCCHHHHHHHHhcc---CCcccccCCCChHHHHHHHcCcHHHHHHHHHc----CCCCCccCCCCChHHHHHHHc
Q psy4998          94 LHIAAHYGNTNIAELLIQKH---ANVNNQAKHNITPLHVACKWGKVAMVELLISK----GANIEAKTRDGLTPLHCAARS  166 (318)
Q Consensus        94 l~~a~~~~~~~~~~~ll~~~---~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~l~~a~~~  166 (318)
                      +..+...+..+-...+++.-   ...-..+..|...+..+......+..+.+++.    -..+ ..+..|...+......
T Consensus        97 lqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l-~~~~~G~~vvq~~l~~  175 (322)
T cd07920          97 IQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVAL-STHPYGCRVIQRCLEH  175 (322)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-HcCccccHHHHHHHHh
Confidence            65566555544333333321   11112345666677777666655555544432    1111 2345566666666665


Q ss_pred             CCHHH----HHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcC---CCCCcCCCCCCCHHHHHHHcCCH----
Q psy4998         167 GHDNV----IDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENG---ANVNATTNLGYTPLHQASQQGRV----  235 (318)
Q Consensus       167 ~~~~~----~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g---~~~~~~~~~g~t~l~~A~~~~~~----  235 (318)
                      ...+.    ++.+..+-. .-..+..|+..+..+...+..+..+.+++.-   ...-..+..|...+..+...+..    
T Consensus       176 ~~~~~~~~l~~~l~~~~~-~L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~l~~~~~~~~~  254 (322)
T cd07920         176 CSEEQREPLLEEILEHAL-ELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKHASKEERE  254 (322)
T ss_pred             CCHHHHHHHHHHHHHHHH-HHhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHCCHHHHH
Confidence            54433    333332211 1234567777777777777655444433320   11114456788888888777753    


Q ss_pred             hHHHHHHhCCC-----CCCCCCCCCCCHHHHHHHcCCHHHH
Q psy4998         236 LIIDLLLGAGA-----QPNATTNHGQTALNIAQKLGYISVI  271 (318)
Q Consensus       236 ~~~~~Ll~~g~-----~~~~~~~~g~t~l~~A~~~~~~~~~  271 (318)
                      .+++.++....     .--..|.+|.-.+..+........-
T Consensus       255 ~ii~~l~~~~~~~~~l~~l~~d~~Gn~Viq~~l~~~~~~~~  295 (322)
T cd07920         255 LIIDEILASGNETSALDTLMKDQYGNYVIQTALDVAKEEQR  295 (322)
T ss_pred             HHHHHHhcCCCchhHHHHHhCCCcccHHHHHHHHhCCHHHH
Confidence            34444444321     1124577888888888877774433

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>PLN03218 maturation of RBCL 1; Provisional

Probab=82.70  E-value=20  Score=35.53  Aligned_cols=18  Identities=6%  Similarity=0.157  Sum_probs=8.8

Q ss_pred             HHHHHHHcCCHHHHHHHH
Q psy4998          31 PLAVAMQQGHDRVVAVLL   48 (318)
Q Consensus        31 ~l~~A~~~g~~~~~~~ll   48 (318)
                      .+...++.|.++.+..++
T Consensus       478 LI~~y~k~G~vd~A~~vf  495 (1060)
T PLN03218        478 LISTCAKSGKVDAMFEVF  495 (1060)
T ss_pred             HHHHHHhCcCHHHHHHHH
Confidence            444555556655444333

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=82.34  E-value=2.2  Score=37.32  Aligned_cols=157  Identities=16%  Similarity=0.129  Sum_probs=66.7

Q ss_pred             ccccChHHHHHHHHhc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCChhHHHHHHhCCCHHHHHHHHhCC
Q psy4998           2 AAQENHDGVVRYLLSK-GGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLEND   80 (318)
Q Consensus         2 A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~ll~~~   80 (318)
                      |+.+|+++-|..+++. ...+......|.....+--..|..|++-.+...      ..+=+.+|+.-|+.+.+..+....
T Consensus       271 av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D------~~~rFeLAl~lg~L~~A~~~a~~~  344 (443)
T PF04053_consen  271 AVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD------PDHRFELALQLGNLDIALEIAKEL  344 (443)
T ss_dssp             HHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-------HHHHHHHHHHCT-HHHHHHHCCCC
T ss_pred             HHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC------hHHHhHHHHhcCCHHHHHHHHHhc
Confidence            4455556555444442 112222222234445555555555555444431      124455666666666665554432


Q ss_pred             CCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHH
Q psy4998          81 HSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPL  160 (318)
Q Consensus        81 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l  160 (318)
                      .++    ......=..|...|+.++++...++..+..       ..+.+....|+.+-++.|.+.-    ......+.++
T Consensus       345 ~~~----~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~-------~L~lLy~~~g~~~~L~kl~~~a----~~~~~~n~af  409 (443)
T PF04053_consen  345 DDP----EKWKQLGDEALRQGNIELAEECYQKAKDFS-------GLLLLYSSTGDREKLSKLAKIA----EERGDINIAF  409 (443)
T ss_dssp             STH----HHHHHHHHHHHHTTBHHHHHHHHHHCT-HH-------HHHHHHHHCT-HHHHHHHHHHH----HHTT-HHHHH
T ss_pred             CcH----HHHHHHHHHHHHcCCHHHHHHHHHhhcCcc-------ccHHHHHHhCCHHHHHHHHHHH----HHccCHHHHH
Confidence            110    011122234555666666666666554332       3344555556666555555431    1111223455


Q ss_pred             HHHHHcCCH-HHHHHHHHcC
Q psy4998         161 HCAARSGHD-NVIDILIEKG  179 (318)
Q Consensus       161 ~~a~~~~~~-~~~~~ll~~~  179 (318)
                      +.+...|+. ++++.|.+.|
T Consensus       410 ~~~~~lgd~~~cv~lL~~~~  429 (443)
T PF04053_consen  410 QAALLLGDVEECVDLLIETG  429 (443)
T ss_dssp             HHHHHHT-HHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHHcC
Confidence            555555553 4555555544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	318
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		7e-55
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		4e-22
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		6e-29
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		7e-29
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-28
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-27
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-15
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		9e-27
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-25
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-13
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		8e-25
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		9e-25
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-24
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		4e-24
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		7e-24
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-23
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		3e-23
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-23
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-23
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-14
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		8e-23
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		4e-22
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-23
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-14
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-22
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-22
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-22
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		1e-21
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-21
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-21
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		9e-20
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		9e-20
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		6e-19
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-18
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-15
1uoh_A	226	Human Gankyrin Length = 226		1e-18
1uoh_A	226	Human Gankyrin Length = 226		2e-15
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-18
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		4e-18
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		4e-18
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-15
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		1e-17
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		3e-15
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		4e-17
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		6e-17
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-15
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		1e-16
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		1e-16
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-16
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		2e-16
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-16
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		3e-16
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		3e-16
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		1e-15
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-15
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-15
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-14
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-15
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		2e-15
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-14
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-15
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-14
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		7e-15
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		4e-05
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		7e-15
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		3e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		2e-14
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		2e-14
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		2e-13
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		2e-13
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		7e-07
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		2e-13
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		6e-06
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		2e-13
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		2e-07
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		2e-13
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		2e-13
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		3e-13
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		2e-12
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		2e-05
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		4e-12
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		4e-11
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		4e-10
2xen_A	91	Structural Determinants For Improved Thermal Stabil		4e-11
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		5e-11
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		7e-10
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		4e-10
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		4e-10
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		4e-10
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		4e-10
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		5e-10
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		5e-10
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		4e-04
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		1e-09
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		2e-07
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		1e-09
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		2e-07
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		2e-09
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		2e-09
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		6e-08
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		2e-06
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		2e-09
3so8_A	162	Crystal Structure Of Ankra Length = 162		2e-09
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		2e-09
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		5e-07
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		2e-09
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		6e-08
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		2e-06
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		3e-09
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		9e-09
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		3e-07
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		9e-09
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		3e-08
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		5e-06
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		9e-09
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		4e-08
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		4e-06
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-08
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-07
1ycs_B	239	P53-53bp2 Complex Length = 239		3e-08
1ycs_B	239	P53-53bp2 Complex Length = 239		2e-07
1ycs_B	239	P53-53bp2 Complex Length = 239		4e-06
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		4e-08
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		4e-08
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		2e-07
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		3e-06
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		8e-08
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		9e-08
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		6e-07
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		1e-07
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		1e-07
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		1e-07
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		6e-07
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		1e-07
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		5e-06
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		2e-07
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		4e-06
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		3e-07
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		7e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		6e-07
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		1e-04
1ymp_A	135	The Crystal Structure Of A Partial Mouse Notch-1 An		7e-06
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		1e-05
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		3e-05
1bi7_B	156	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		5e-05
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		6e-05
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		7e-05
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		6e-04
3ljn_A	364	Ankyrin Repeat Protein From Leishmania Major Length		8e-05
3deo_A	183	Structural Basis For Specific Substrate Recognition		8e-05
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		9e-05
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		2e-04
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		1e-04
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		1e-04
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		1e-04
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		2e-04
1dcq_A	278	Crystal Structure Of The Arf-Gap Domain And Ankyrin		1e-04
1dc2_A	156	Solution Nmr Structure Of Tumor Suppressor P16ink4a		5e-04
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		8e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score =  210 bits (535), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 126/318 (39%), Positives = 175/318 (55%), Gaps = 9/318 (2%)
Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDT----KGKV 56
           +AA+E H   V  LL K  +Q   T+ GFTPL VA + G  RV  +LLE D      GK 
Sbjct: 119 IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN 178
Query: 57  KLPALHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
            L  LH+                  SP   + + +TPLHIAA      +A  L+Q   + 
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238
Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
           N ++   +TPLH+A + G   MV LL+SK AN     + GLTPLH  A+ GH  V D+LI
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 298
Query: 177 EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
           + G  + + T+ G+TPLH+ASH+G + +V++L+++ A+VNA T LGY+PLHQA+QQG   
Sbjct: 299 KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD 358
Query: 237 IIDLLLGAGAQPNATTNHGQTALNIAQKLGYISXXXXXXXXXXXXXXXXXXXXXXXKYRV 296
           I+ LLL  GA PN  ++ G T L IA++LGYIS                       K+R+
Sbjct: 359 IVTLLLKNGASPNEVSSDGTTPLAIAKRLGYIS----VTDVLKVVTDETSFVLVSDKHRM 414
Query: 297 VAPEAMQEVYMSDSEDEG 314
             PE + E+ +  SEDEG
Sbjct: 415 SFPETVDEI-LDVSEDEG 431

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/145 (40%), Positives = 82/145 (56%)
Query: 124 ITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 183
           +TPLHVA   G + +V+ L+ +GA+         TPLH AAR+GH  V   L++  A + 
Sbjct: 15  LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 184 SKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
           +K K   TPLH A+  G  NMV+ L+EN AN N  T  G+TPLH A+++G V  +  LL 
Sbjct: 75  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Query: 244 AGAQPNATTNHGQTALNIAQKLGYI 268
             A     T  G T L++A K G +
Sbjct: 135 KEASQACMTKKGFTPLHVAAKYGKV 159

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score =  124 bits (311), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 59/133 (44%), Positives = 92/133 (69%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
           A + G+   V +L++ GA++ AK +DG TPLH AAR GH  ++++L++ GA + +K K G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
           +TPLH+A+  G L +V  L++ GA+VNA    GYTPLH A+++G + I+++LL AGA  N
Sbjct: 81  YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
Query: 250 ATTNHGQTALNIA 262
           A    G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  124 bits (311), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 59/138 (42%), Positives = 94/138 (68%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
           A + G+   V +L++ GA++ AK +DG TPLH AAR GH  ++++L++ GA + +K K G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
           +TPLH+A+  G L +V  L++ GA+VNA    GYTPLH A+++G + I+++LL AGA  N
Sbjct: 69  YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 250 ATTNHGQTALNIAQKLGY 267
           A    G+T  ++A + G+
Sbjct: 129 AQDKFGKTPFDLAIREGH 146

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/133 (43%), Positives = 91/133 (68%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
           A + G+   V +L++ GA++ AK +DG TPLH AAR GH  ++++L++ GA + +K K G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
           +TPLH+A+  G L +V  L++ GA+VNA    GYTPLH A+++G + I+++LL AGA  N
Sbjct: 69  YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 250 ATTNHGQTALNIA 262
           A    G+T  ++A
Sbjct: 129 AQDKFGKTPFDLA 141

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score =  119 bits (297), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 87/145 (60%)
Query: 97  AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
           AA  GN +  + LI+  A+VN       TPLH A K G   +V+LLISKGA++ AK  DG
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
            TPLH AA+ GH  ++ +LI KGA + +K   G TPLH A+  G   +V+ L+  GA+VN
Sbjct: 71  RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130
Query: 217 ATTNLGYTPLHQASQQGRVLIIDLL 241
            + + G TPL  A + G   I+ LL
Sbjct: 131 TSDSDGRTPLDLAREHGNEEIVKLL 155

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 77.8 bits (190), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 63/105 (60%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
           AA +G+ + +  LIE GA + +    G TPLH A+  G   +V+ L+  GA+VNA  + G
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGY 267
            TPLH A+++G   I+ LL+  GA  NA  + G+T L+ A K G+
Sbjct: 71  RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGH 115

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score =  117 bits (293), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 59/122 (48%), Positives = 86/122 (70%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
           TPLH+A + G + +V+LL+  GA++ AK ++G TPLH AAR+GH  V+ +L+E GA + +
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 244
           K K G TPLH+A+  G L +V+ L+E GA+VNA    G TPLH A++ G + ++ LLL A
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123
Query: 245 GA 246
           GA
Sbjct: 124 GA 125

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/145 (43%), Positives = 87/145 (60%)
Query: 97  AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
           AA  GN +  + LI+  A+VN       TPLH A + G   +V+LLISKGA++ AK  DG
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
            TPLH AA +GH  V+ +LI KGA + +K   G TPLH A+  G   +V+ L+  GA+VN
Sbjct: 71  RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN 130
Query: 217 ATTNLGYTPLHQASQQGRVLIIDLL 241
            + + G TPL  A + G   ++ LL
Sbjct: 131 TSDSDGRTPLDLAREHGNEEVVKLL 155

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 62/105 (59%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
           AA +G+ + +  LIE GA + +    G TPLH A+  G   +V+ L+  GA+VNA  + G
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGY 267
            TPLH A++ G   ++ LL+  GA  NA  + G+T L+ A + G+
Sbjct: 71  RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH 115

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score =  110 bits (276), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 87/133 (65%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
           A + G+   V +L++ GA++ A+   G TPLH AA  GH  ++++L++ GA + +  K G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
            TPLH+A+ +G L +V  L++NGA+VNAT   G+TPLH A+  G + I+++LL  GA  N
Sbjct: 81  DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN 140
Query: 250 ATTNHGQTALNIA 262
           A    G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score =  110 bits (276), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 89/133 (66%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
           A + G+   V +L++ GA++ A+   G TPLH AA  GH  ++++L++ GA + +K   G
Sbjct: 21  AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
            TPLH+A+  G L +V  L++NGA+VNA+ + G+TPLH A+++G + I+++LL  GA  N
Sbjct: 81  VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 250 ATTNHGQTALNIA 262
           A    G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score =  108 bits (270), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 88/133 (66%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
           A + G+   V +L++ GA++ A    G TPLH AA SGH  ++++L++ GA + +    G
Sbjct: 21  AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
           +TPLH+A+++G L +V  L++NGA+VNA  + G TPLH A++ G + I+++LL  GA  N
Sbjct: 81  YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Query: 250 ATTNHGQTALNIA 262
           A    G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score =  108 bits (270), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 86/133 (64%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
           A + G+   V +L++ GA++ A    G TPLH AA  GH  ++++L++ GA + +    G
Sbjct: 21  AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
            TPLH+A+HFG L +V  L++NGA+VNA  + G TPLH A+ +G + I+++LL  GA  N
Sbjct: 81  STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN 140
Query: 250 ATTNHGQTALNIA 262
           A    G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score =  107 bits (268), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 87/133 (65%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
           A + G+   V +L++ GA++ A   DG TPLH AA +GH  ++++L++ GA + +    G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
            TPLH+A+  G L +V  L+++GA+VNA  N G+TPLH A++ G + I+++LL  GA  N
Sbjct: 81  ITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN 140
Query: 250 ATTNHGQTALNIA 262
           A    G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/133 (42%), Positives = 85/133 (63%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
           A + G+   V +LI+ GA++ A    GLTPLH AA SGH  ++++L++ GA + +    G
Sbjct: 21  AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
           FTPLH+A+  G L +V  L++ GA+VNA    G TPLH A+ +G + I+++LL  GA  N
Sbjct: 81  FTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN 140
Query: 250 ATTNHGQTALNIA 262
           A    G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 86/133 (64%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
           A + G+   V +L++ GA++ A+   G TPLH AA +GH  ++++L++ GA + +   AG
Sbjct: 21  AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
            TPL +A+ FG L +V  L++NGA+VNA    G+TPLH A+  G + I+++LL  GA  N
Sbjct: 81  MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140
Query: 250 ATTNHGQTALNIA 262
           A    G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 86/133 (64%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
           A + G+   V +L++ GA++ A    G+TPLH    +GH  +I++L++  A + +  K+G
Sbjct: 21  AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
           +TPLH+A++ G L +V  L++ GA+VNA    GYTPLH A++ G + I+++LL  GA  N
Sbjct: 81  WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 250 ATTNHGQTALNIA 262
           A    G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 57/145 (39%), Positives = 86/145 (59%)
Query: 97  AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
           AA  GN +  + L++  A+VN       TPLH+A + G   +V+LL+S+GA+  AK  DG
Sbjct: 11  AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
            TPLH AA +GH  V+ +L+ +GA   +K   G TPLH+A+  G   +V+ L+  GA+ N
Sbjct: 71  KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 130
Query: 217 ATTNLGYTPLHQASQQGRVLIIDLL 241
            + + G TPL  A + G   ++ LL
Sbjct: 131 TSDSDGRTPLDLAREHGNEEVVKLL 155

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 64/105 (60%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
           AA +G+ + +  L+E GA + +    G TPLH+A+  G   +V+ L+  GA+ NA  + G
Sbjct: 11  AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGY 267
            TPLH A++ G   ++ LLL  GA PNA  + G+T L++A + G+
Sbjct: 71  KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGH 115

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score =  104 bits (259), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 87/138 (63%)
Query: 97  AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
           AA  G  +   +L+   A+VN    + +TPLH+A   G++ +VE+L+  GA++ A    G
Sbjct: 13  AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
           +TPLH AA  GH  ++++L++ GA + +  +AG+TPLH+A+  GQL +V  L+++GA+VN
Sbjct: 73  ITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVN 132
Query: 217 ATTNLGYTPLHQASQQGR 234
           A   LG T    +  QG+
Sbjct: 133 AQDALGLTAFDISINQGQ 150

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 86/133 (64%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
           A   G+   V +L++ GA++ A   +GLTPLH AA +G   ++++L++ GA + +   AG
Sbjct: 13  AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
            TPLH+A++ G L +V  L+++GA+VNA    G+TPLH A+  G++ I+++LL  GA  N
Sbjct: 73  ITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVN 132
Query: 250 ATTNHGQTALNIA 262
           A    G TA +I+
Sbjct: 133 AQDALGLTAFDIS 145

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score =  104 bits (259), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 58/145 (40%), Positives = 83/145 (57%)
Query: 97  AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
           AA  GN +  + L++  A+ N       TPLH A + G   +V+LL+SKGA+  AK  DG
Sbjct: 11  AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
            TPLH AA +GH  ++ +L+ KGA   +K   G TPLH A+  G   +V+ L+  GA+ N
Sbjct: 71  RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 130
Query: 217 ATTNLGYTPLHQASQQGRVLIIDLL 241
            + + G TPL  A + G   I+ LL
Sbjct: 131 TSDSDGRTPLDLAREHGNEEIVKLL 155

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 61/105 (58%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
           AA +G+ + +  L+E GA   +    G TPLH A+  G   +V+ L+  GA+ NA  + G
Sbjct: 11  AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGY 267
            TPLH A++ G   I+ LLL  GA PNA  + G+T L+ A + G+
Sbjct: 71  RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGH 115

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 84/133 (63%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
           A + G+   V +L++ GA++ A    G TPLH AA  GH  ++++L++ GA + +    G
Sbjct: 21  AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
            TPLH+A+  G L +V  L++NGA+VNA  + G+TPLH A+  G + I+++LL  GA  N
Sbjct: 81  VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
Query: 250 ATTNHGQTALNIA 262
           A    G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 85/133 (63%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
           A + G+   V +L++ GA++ A+   G TPLH AAR GH  ++++L++ GA + +   +G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
            TPLH+A+  G L +V  L++ GA+VNA   +G TPLH A+  G + I+++LL  GA  N
Sbjct: 81  STPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN 140
Query: 250 ATTNHGQTALNIA 262
           A    G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 84/133 (63%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
           A + G+   V +L++ GA++ A    G TPLH AA  GH  ++++L++ GA + ++   G
Sbjct: 21  AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
           +TPLH+A+  G L +V  L++ GA+VNA    G TPLH A+ +G + I+++LL  GA  N
Sbjct: 81  WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 250 ATTNHGQTALNIA 262
           A    G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 83/133 (62%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
           A + G+   V +L++ GA++ A    GLTPLH AA  GH  ++++L++ GA + +    G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
            TPLH+A+  G L +V  L+++GA+VNA    G TPLH A+  G + I+++LL  GA  N
Sbjct: 81  STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 250 ATTNHGQTALNIA 262
           A    G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 83/133 (62%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
           A + G+   V +L++ GA++ A    GLTPLH AA  GH  ++++L++ GA + +    G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
            TPLH+A+  G L +V  L+++GA+VNA    G TPLH A+  G + I+++LL  GA  N
Sbjct: 81  STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 250 ATTNHGQTALNIA 262
           A    G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 85/133 (63%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
           A + G+   V +L++ GA++ A    G TPLH AA++GH  ++++L++ GA + +    G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
            TPLH+A+  G L +V  L+++GA+VNA    G+TPLH A+  G + I+++LL  GA  N
Sbjct: 81  ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Query: 250 ATTNHGQTALNIA 262
           A    G+TA +I+
Sbjct: 141 AQDKFGKTAFDIS 153

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 94.0 bits (232), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 81/137 (59%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
           A + G+   V +L++ GA+  A    G TPLH AA  GH  ++++L+  GA + +    G
Sbjct: 9   AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
            TPLH+A+  G L +V  L++ GA+VNA    G TPL+ A+  G + I+++LL  GA  N
Sbjct: 69  TTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVN 128
Query: 250 ATTNHGQTALNIAQKLG 266
           A    G+TA +I+  +G
Sbjct: 129 AQDKFGKTAFDISIDIG 145

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 94.0 bits (232), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 95/174 (54%), Gaps = 1/174 (0%)
Query: 92  TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
           +PLH AA  G+ +I  +L+Q  AN++  ++   TPL  A +   +  V+ LI  GA ++ 
Sbjct: 13  SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
           K  +G T LH AA+ GH  V+  L+  G   +  +   G+TP+  A+ +  +++V+ L+ 
Sbjct: 73  KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132
Query: 211 NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQK 264
            G+++N   N     LH A+  G V I ++LL A    +A   HG + L+IA +
Sbjct: 133 KGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAR 186

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 91.3 bits (225), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 118/252 (46%), Gaps = 30/252 (11%)
Query: 22  TLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIXXXXXXXXXXXXXXENDH 81
           T A EDG TPL +A+ QG+                 LPA+H               +   
Sbjct: 3   TRADEDGDTPLHIAVVQGN-----------------LPAVH--------RLVNLFQQGGR 37
Query: 82  SPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVEL 141
             D+ +N   TPLH+A      ++  LL+   A+     +H  T  H+AC+      +  
Sbjct: 38  ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRA 97
Query: 142 LISKGA----NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS-KTKAGFTPLHIA 196
           L+   A    ++EA+  DGLT LH A  +     + +L+E+GA + +   K+G +PL  A
Sbjct: 98  LLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA 157
Query: 197 SHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQ 256
                L+MV+ L+++GANVNA    G + LH AS +G + ++  L+ +GA  +    H  
Sbjct: 158 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHND 217
Query: 257 TALNIAQKLGYI 268
           T L +A+    I
Sbjct: 218 TPLMVARSRRVI 229

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 89/178 (50%), Gaps = 1/178 (0%)
Query: 92  TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
           T LH A   G+T I E L+Q    VN++     +PLH+A   G+  +V+ L+ KGA + A
Sbjct: 43  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN 211
             ++G TPLH AA      +  +L+E GA   +K     T +H A+  G L M+  L+  
Sbjct: 103 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 162
Query: 212 GANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQ-KLGYI 268
            A+ N     G TPLH A  + RV    LL+  GA         +T L +A+  LG I
Sbjct: 163 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLI 220

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 66/113 (58%)
Query: 154 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA 213
           +D  T LH A  +GH  +++ L++ G  +  K  AG++PLHIA+  G+  +V+ L+  GA
Sbjct: 39  QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 98
Query: 214 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLG 266
            VNA    G TPLH A+ + R  I  +LL  GA P+A  ++  TA++ A   G
Sbjct: 99  QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG 151

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 89/178 (50%), Gaps = 1/178 (0%)
Query: 92  TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
           T LH A   G+T I E L+Q    VN++     +PLH+A   G+  +V+ L+ KGA + A
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN 211
             ++G TPLH AA      +  +L+E GA   +K     T +H A+  G L M+  L+  
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 161
Query: 212 GANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQ-KLGYI 268
            A+ N     G TPLH A  + RV    LL+  GA         +T L +A+  LG I
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLI 219

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 66/113 (58%)
Query: 154 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA 213
           +D  T LH A  +GH  +++ L++ G  +  K  AG++PLHIA+  G+  +V+ L+  GA
Sbjct: 38  QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 97
Query: 214 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLG 266
            VNA    G TPLH A+ + R  I  +LL  GA P+A  ++  TA++ A   G
Sbjct: 98  QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG 150

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 64/92 (69%)
Query: 155 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
           +G TPLH AAR+GH  V+ +L+E GA + +K K G TPLH+A+  G L +V+ L+E GA+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 215 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 246
           VNA    G TPLH A++ G + ++ LLL AGA
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 82/149 (55%)
Query: 116 VNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
           VN  ++   +PLHVA   G+  ++ LL+  GAN  A+  D   PLH A + GH  V+  L
Sbjct: 79  VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 176 IEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV 235
           ++  A    K  +G TPL  A   G   +V  L+++GA++NA+ N G T LH+A  +  V
Sbjct: 139 LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHV 198
Query: 236 LIIDLLLGAGAQPNATTNHGQTALNIAQK 264
            +++LLL  GA         +TA++ A++
Sbjct: 199 FVVELLLLHGASVQVLNKRQRTAVDCAEQ 227

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 89/178 (50%), Gaps = 1/178 (0%)
Query: 92  TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
           T LH A   G+T I E L+Q    VN++     +PLH+A   G+  +V+ L+ KGA++ A
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNA 101
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN 211
             ++G TPLH AA      +  +L+E GA   +K     T +H A+  G L MV  L+  
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 212 GANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQ-KLGYI 268
            A+ N     G TPLH A  + RV     L+  GA         +T L +A+  LG I
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLI 219

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 67/113 (59%)
Query: 154 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA 213
           +D  T LH A  +GH  +++ L++ G  +  K  AG++PLHIA+  G+  +V+ L+  GA
Sbjct: 38  QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGA 97
Query: 214 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLG 266
           +VNA    G TPLH A+ + R  I  +LL  GA P+A  ++  TA++ A   G
Sbjct: 98  HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG 150

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 88/178 (49%), Gaps = 1/178 (0%)
Query: 92  TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
           T LH A   G+T I E L+Q    VN++     +PLH+A   G   +V+ L+ KGA++ A
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101
Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN 211
             ++G TPLH AA      +  +L+E GA   +K     T +H A+  G L MV  L+  
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 212 GANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQ-KLGYI 268
            A+ N     G TPLH A  + RV     L+  GA         +T L +A+  LG I
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLI 219

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 66/113 (58%)
Query: 154 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA 213
           +D  T LH A  +GH  +++ L++ G  +  K  AG++PLHIA+  G   +V+ L+  GA
Sbjct: 38  QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGA 97
Query: 214 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLG 266
           +VNA    G TPLH A+ + R  I  +LL  GA P+A  ++  TA++ A   G
Sbjct: 98  HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG 150

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 65/100 (65%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
           AAR+G D+ + IL+  GA + +  + G TPLH+A+  G L +V  L++ GA+VNA  N G
Sbjct: 21  AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
            TPLH A+ +G + I+++LL  GA  NA    G+TA +I+
Sbjct: 81  ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 84.7 bits (208), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 42/95 (44%), Positives = 64/95 (67%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
           TPLH A K G    V+ L+SKGA++ A+++DG TPLH AA++GH  ++ +L+ KGA + +
Sbjct: 11  TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATT 219
           ++K G TP H+A   G   +V+ L   GA+VNA +
Sbjct: 71  RSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 62/100 (62%)
Query: 153 TRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENG 212
           ++DG TPLH AA++GH   +  L+ KGA + +++K G TPLH+A+  G   +V+ L+  G
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 213 ANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATT 252
           A+VNA +  G TP H A + G   I+ LL   GA  NA +
Sbjct: 66  ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 1/138 (0%)
Query: 101 GNTNIAELLIQKHANVNNQAK-HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTP 159
           GN     L +    N  NQ   H  +PLH AC+ G+ A+VE+LI +GA I    R   TP
Sbjct: 16  GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 75
Query: 160 LHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATT 219
           LH AA  GH +++  L++  A + +  + G  PLH A  +GQ  +   LV NGA V+   
Sbjct: 76  LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 135
Query: 220 NLGYTPLHQASQQGRVLI 237
             G  P+ +A    R L+
Sbjct: 136 KYGEMPVDKAKAPLRELL 153

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 1/138 (0%)
Query: 101 GNTNIAELLIQKHANVNNQAK-HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTP 159
           GN     L +    N  NQ   H  +PLH AC+ G+ A+VE+LI +GA I    R   TP
Sbjct: 11  GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 70
Query: 160 LHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATT 219
           LH AA  GH +++  L++  A + +  + G  PLH A  +GQ  +   LV NGA V+   
Sbjct: 71  LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 130
Query: 220 NLGYTPLHQASQQGRVLI 237
             G  P+ +A    R L+
Sbjct: 131 KYGEMPVDKAKAPLRELL 148

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 69/125 (55%)
Query: 138 MVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIAS 197
           ++ LL     N  A      TPLH AA      ++ +L++ GA +++K K G  PLH A 
Sbjct: 40  LMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNAC 99
Query: 198 HFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQT 257
            +G   +   L+++GA VNA     +TPLH+A+ + RV +  LLL  GA P     HG++
Sbjct: 100 SYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKS 159
Query: 258 ALNIA 262
           A+++A
Sbjct: 160 AVDMA 164

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 66/100 (66%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
           AAR+G D+ + IL+  GA + +K + G TPL++A+  G L +V  L++NGA+VNA   +G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
           +TPLH A+  G + I ++LL  GA  NA    G+TA +I+
Sbjct: 81  FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 63/100 (63%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
           AAR+G D+ + IL   GA + +    G TPLH+A+  G L +V  L++NGA+VNAT N G
Sbjct: 21  AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
            TPLH A+    + I+++LL  GA  NA    G+TA +I+
Sbjct: 81  RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 64/100 (64%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
           AAR+G D+ + IL+  GA + ++ K G TPLH+A+    L +V  L++NGA+VNA   +G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
            TPLH  +  G + I+++LL  GA  NA    G+TA +I+
Sbjct: 81  ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 65/100 (65%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
           A R+G D+ + IL+  GA + +   AG TPLH+A+  G L +V  L+++GA+VNA+ + G
Sbjct: 21  ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
            TPLH A+  G + I+++LL  GA  NA    G+TA +I+
Sbjct: 81  RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 64/100 (64%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
           A R+G D+ + IL+  GA + +   AG TPLH+A+  G L +V  L+++GA+VNA+   G
Sbjct: 21  ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
            TPLH A+  G + I+++LL  GA  NA    G+TA +I+
Sbjct: 81  RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 65/100 (65%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
           AAR+G D+ + IL+  GA + +  + G TPLH+A+ +  L +V  L+++GA+VNA  N G
Sbjct: 21  AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
            TPLH A+  G + I+++LL  GA  NA    G+TA +I+
Sbjct: 81  STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 1/142 (0%)
Query: 105 IAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAA 164
           + +L   +  N  +      TPLH A  + +V++VE L+  GA++ AK + GL PLH A 
Sbjct: 26  VKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC 85
Query: 165 RSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYT 224
             GH  V ++L++ GA +       FTPLH A+  G+  + + L+++GA+       G T
Sbjct: 86  SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT 145
Query: 225 PLHQASQQGRVLIIDLLLGAGA 246
           PL    + G   I DLL G  A
Sbjct: 146 PL-DLVKDGDTDIQDLLRGDAA 166

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 60/106 (56%)
Query: 158 TPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNA 217
           TPLH AA     +V++ L++ GA +++K K G  PLH A  +G   +   LV++GA VN 
Sbjct: 46  TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 218 TTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQ 263
                +TPLH+A+ +G+  I  LLL  GA P      G T L++ +
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 151

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 63/100 (63%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
           A R+G D+ + IL+  GA + +   AG TPLH+A+  G L +V  L+++GA+VNA    G
Sbjct: 21  ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
            TPLH A+  G + I+++LL  GA  NA    G+TA +I+
Sbjct: 81  RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 2/155 (1%)
Query: 97  AAHYGNTN-IAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRD 155
           AA  G+   + +L   +  N  +      TPLH A  + +V++VE L+  GA++ AK + 
Sbjct: 19  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 78
Query: 156 GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANV 215
           GL PLH A   GH  V ++L++ GA +       FTPLH A+  G+  + + L+++GA+ 
Sbjct: 79  GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 138
Query: 216 NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 250
                 G TPL    + G   I DLL G  A  +A
Sbjct: 139 TKKNRDGNTPL-DLVKDGDTDIQDLLRGDAALLDA 172

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 60/106 (56%)
Query: 158 TPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNA 217
           TPLH AA     +V++ L++ GA +++K K G  PLH A  +G   +   LV++GA VN 
Sbjct: 48  TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 218 TTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQ 263
                +TPLH+A+ +G+  I  LLL  GA P      G T L++ +
Sbjct: 108 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 153

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 1/142 (0%)
Query: 105 IAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAA 164
           + +L   +  N  +      TPLH A  + +V++VE L+  GA++ AK + GL PLH A 
Sbjct: 24  VKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC 83
Query: 165 RSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYT 224
             GH  V ++L++ GA +       FTPLH A+  G+  + + L+++GA+       G T
Sbjct: 84  SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT 143
Query: 225 PLHQASQQGRVLIIDLLLGAGA 246
           PL    + G   I DLL G  A
Sbjct: 144 PL-DLVKDGDTDIQDLLRGDAA 164

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 60/106 (56%)
Query: 158 TPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNA 217
           TPLH AA     +V++ L++ GA +++K K G  PLH A  +G   +   LV++GA VN 
Sbjct: 44  TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 218 TTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQ 263
                +TPLH+A+ +G+  I  LLL  GA P      G T L++ +
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 149

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 127/283 (44%), Gaps = 47/283 (16%)
Query: 1   MAAQENHD-GVVRYLLSKGGNQTLATEDG-FTPLAVAMQQGHDRVVAVLLENDTKGKVKL 58
           + A +N D  +V+ LL  G N     E+G +TPL  A+Q   + +V +LL +        
Sbjct: 10  IKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA------ 63
Query: 59  PALHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
                                   P ++  +  TP  +AA  G+  + +L + K A+VN 
Sbjct: 64  -----------------------DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE 100
Query: 119 QAKHNITPLHVACKWGKVAMVELLISKGANI--EAKTRD--------GLTPLHCAARSGH 168
              +  T    A  +GKV  ++ L  +GAN+    KT++        G T L  AA  GH
Sbjct: 101 CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH 160
Query: 169 DNVIDILI-EKGAALYSKTKAGFTPL---HIASHFGQLNMVRY-LVENGANVNATTNLGY 223
             V+ IL+ E GA + +    G   L    ++S    +  + + L+++GA+VN     G 
Sbjct: 161 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 220
Query: 224 TPLHQASQQGRV-LIIDLLLGAGAQPNATTNHGQTALNIAQKL 265
           TPL  A ++  + L+  LL     + N T + G+TAL +A +L
Sbjct: 221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL 263

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 170 NVIDILIEKGAAL-YSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQ 228
           +++  L+E GA + + + + G+TPLH A    + ++V  L+ +GA+       G TP   
Sbjct: 19  DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLL 78
Query: 229 ASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYIS 269
           A+  G V ++ L L  GA  N    +G TA   A   G + 
Sbjct: 79  AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 127/283 (44%), Gaps = 47/283 (16%)
Query: 1   MAAQENHD-GVVRYLLSKGGNQTLATEDG-FTPLAVAMQQGHDRVVAVLLENDTKGKVKL 58
           + A +N D  +V+ LL  G N     E+G +TPL  A+Q   + +V +LL +        
Sbjct: 30  IKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA------ 83
Query: 59  PALHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
                                   P ++  +  TP  +AA  G+  + +L + K A+VN 
Sbjct: 84  -----------------------DPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNE 120
Query: 119 QAKHNITPLHVACKWGKVAMVELLISKGANI--EAKTRD--------GLTPLHCAARSGH 168
              +  T    A  +GKV  ++ L  +GAN+    KT++        G T L  AA  GH
Sbjct: 121 CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH 180
Query: 169 DNVIDILI-EKGAALYSKTKAGFTPL---HIASHFGQLNMVRY-LVENGANVNATTNLGY 223
             V+ IL+ E GA + +    G   L    ++S    +  + + L+++GA+VN     G 
Sbjct: 181 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 240
Query: 224 TPLHQASQQGRV-LIIDLLLGAGAQPNATTNHGQTALNIAQKL 265
           TPL  A ++  + L+  LL     + N T + G+TAL +A +L
Sbjct: 241 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL 283

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 170 NVIDILIEKGAAL-YSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQ 228
           +++  L+E GA + + + + G+TPLH A    + ++V  L+ +GA+       G TP   
Sbjct: 39  DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFIL 98
Query: 229 ASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYI 268
           A+  G V ++ L L  GA  N    +G TA   A   G +
Sbjct: 99  AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV 138

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 78/135 (57%), Gaps = 5/135 (3%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRD--GLTPLHCAARSGHDNVIDILIEKGAALYSKTK 187
           A + G+   V +L++ GA     T D  G +PLH AA+ GH +  ++L+  G +  ++TK
Sbjct: 9   AARAGQDDEVRILMANGAPF---TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK 65
Query: 188 AGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ 247
              TPLH+A+  G  N+V  L+++GA+VNA   L  T LH A++     +++LL+  GA 
Sbjct: 66  VDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD 125
Query: 248 PNATTNHGQTALNIA 262
            +  +   +TA +I+
Sbjct: 126 VHTQSKFCKTAFDIS 140

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 77/150 (51%)
Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
           N +  +N TPL VAC  G    ++ L+     +E K  +G T L  A ++    + + L+
Sbjct: 29  NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 177 EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
            KG+ + +K  +G TPL  +  FG   M  +L+E+GANVN     G TPL  AS+ GR  
Sbjct: 89  SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148
Query: 237 IIDLLLGAGAQPNATTNHGQTALNIAQKLG 266
           I+  LL  GA  +A    G TA   A+  G
Sbjct: 149 IVKKLLELGADISARDLTGLTAEASARIFG 178

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 85  VKSNSHFTPLHIAA------HYGNTN--------IAELLIQKHANVNNQAKHNITPLHVA 130
           V+    FTPL IA+        GN+         I++ + Q  +  N   +   T LH+A
Sbjct: 5   VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 64
Query: 131 CKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSKTKAG 189
            ++ +    + L+   A+   +   G TPLH A  +    V  ILI   A  L ++   G
Sbjct: 65  ARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG 124
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
            TPL +A+      M+  L+ + A+VNA  +LG + LH A+    V    +LL  GA  +
Sbjct: 125 TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 184
Query: 250 ATTNHGQTALNIAQKLG 266
              N  +T L +A + G
Sbjct: 185 MQNNREETPLFLAAREG 201

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 92/204 (45%), Gaps = 36/204 (17%)
Query: 97  AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRD- 155
           A  YG       L++   +V    K N+T LH A    ++ +V+  ISKGA ++    D 
Sbjct: 16  ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75
Query: 156 GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANV 215
             TPLH A R GH +++  L++ GA        G + +H+A+ FG  ++V YL+  G +V
Sbjct: 76  NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135
Query: 216 ------------------------------NATTNLG-----YTPLHQASQQGRVLIIDL 240
                                         N + NLG      T LH A   G   +I L
Sbjct: 136 DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL 195
Query: 241 LLGAGAQPNATTNHGQTALNIAQK 264
           LL AGA  +A    G++AL++A++
Sbjct: 196 LLEAGANVDAQNIKGESALDLAKQ 219

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 175 LIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATT-NLGYTPLHQASQQG 233
           L+E G  +    K   T LH A+   ++++V+Y +  GA V+    +L  TPLH A++QG
Sbjct: 28  LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQG 87
Query: 234 RVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYIS 269
            + ++  L+  GA P+     G + +++A + G+ S
Sbjct: 88  HLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTS 123

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 90/174 (51%), Gaps = 1/174 (0%)
Query: 92  TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI-SKGANIE 150
           T LH+AA Y  ++ A+ L++  A+ N Q     TPLH A       + ++LI ++  +++
Sbjct: 27  TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 86
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
           A+  DG TPL  AAR   + +++ LI   A + +    G + LH A+    ++    L++
Sbjct: 87  ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 146
Query: 211 NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQK 264
           NGAN +   N   TPL  A+++G      +LL   A  + T +  +   +IAQ+
Sbjct: 147 NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 200

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 171 VIDILIEKGAALYSKT-KAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLH-- 227
           VI   I +GA+L+++T + G T LH+A+ + + +  + L+E  A+ N   N+G TPLH  
Sbjct: 6   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Query: 228 -QASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLG 266
             A  QG   I  L+       +A  + G T L +A +L 
Sbjct: 66  VSADAQGVFQI--LIRNRATDLDARMHDGTTPLILAARLA 103

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 85  VKSNSHFTPLHIAA------HYGNTN--------IAELLIQKHANVNNQAKHNITPLHVA 130
           V+    FTPL IA+        GN+         I++ + Q  +  N   +   T LH+A
Sbjct: 6   VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 65
Query: 131 CKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSKTKAG 189
            ++ +    + L+   A+   +   G TPLH A  +    V  ILI   A  L ++   G
Sbjct: 66  ARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG 125
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
            TPL +A+      M+  L+ + A+VNA  +LG + LH A+    V    +LL  GA  +
Sbjct: 126 TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 185
Query: 250 ATTNHGQTALNIAQKLG 266
              N  +T L +A + G
Sbjct: 186 MQNNREETPLFLAAREG 202

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 19/137 (13%)
Query: 146 GANIEAKTRDGLTPLHCAARSG-------------HDNVIDILIEKGAALYSKT-KAGFT 191
           G ++  +  DG TPL  A+ SG                VI   I +GA+L+++T + G T
Sbjct: 1   GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 60
Query: 192 PLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLH---QASQQGRVLIIDLLLGAGAQP 248
            LH+A+ + + +  + L+E  A+ N   N+G TPLH    A  QG   I  L+       
Sbjct: 61  ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQI--LIRNRATDL 118
Query: 249 NATTNHGQTALNIAQKL 265
           +A  + G T L +A +L
Sbjct: 119 DARMHDGTTPLILAARL 135

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 86/161 (53%), Gaps = 1/161 (0%)
Query: 89  SHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGAN 148
           S ++P+H AA +G+      LI +   VN     +++PLH AC  G ++ V++L+  GA 
Sbjct: 58  SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 117
Query: 149 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
           +   T D  TPL  A  SG  + +++L++ GA++  ++    +P+H A+  G +  V  L
Sbjct: 118 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSL 176
Query: 209 VENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
           +  G N++   +   TPL+ A +  +   +  LL +GA  N
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 217

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 86/161 (53%), Gaps = 1/161 (0%)
Query: 89  SHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGAN 148
           S ++P+H AA +G+      LI +   VN     +++PLH AC  G ++ V++L+  GA 
Sbjct: 2   SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 149 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
           +   T D  TPL  A  SG  + +++L++ GA++  ++    +P+H A+  G +  V  L
Sbjct: 62  VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSL 120
Query: 209 VENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
           +  G N++   +   TPL+ A +  +   +  LL +GA  N
Sbjct: 121 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 161

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 88/197 (44%), Gaps = 15/197 (7%)
Query: 85  VKSNSHFTPLHIAA------HYGNTN--------IAELLIQKHANVNNQAKHNITPLHVA 130
           V+    FTPL IA+        GN+         I++ + Q  +  N   +   T LH+A
Sbjct: 5   VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLA 64
Query: 131 CKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSKTKAG 189
             + +    + L+   A+   +   G TPLH A  +    V  ILI   A  L ++   G
Sbjct: 65  AAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG 124
Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
            TPL +A+      M+  L+ + A+VNA  +LG + LH A+    V    +LL  GA  +
Sbjct: 125 TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 184
Query: 250 ATTNHGQTALNIAQKLG 266
              N  +T L +A + G
Sbjct: 185 MQNNREETPLFLAAREG 201

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 89/174 (51%), Gaps = 1/174 (0%)
Query: 92  TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI-SKGANIE 150
           T LH+AA Y  ++ A+ L++  A+   Q     TPLH A       + ++L+ ++  +++
Sbjct: 24  TALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLD 83
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
           A+  DG TPL  AAR   + +++ LI   A + +    G + LH A+    ++    L++
Sbjct: 84  ARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 143
Query: 211 NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQK 264
           NGAN +   N   TPL  A+++G      +LL   A  + T +  +   +IAQ+
Sbjct: 144 NGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 197

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 170 NVIDILIEKGAALYSKT-KAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLH- 227
           +VI   I +GA+L+++T + G T LH+A+ + + +  + L+E  A+     N+G TPLH 
Sbjct: 2   SVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHA 61
Query: 228 --QASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLG 266
              A  QG   I  LL       +A  + G T L +A +L 
Sbjct: 62  AVSADAQGVFQI--LLRNRATDLDARMHDGTTPLILAARLA 100

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 92/235 (39%), Gaps = 62/235 (26%)
Query: 97  AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
           A   G+T     L+++ A++N      +T LH AC    V MV+ L+  GANI     +G
Sbjct: 47  ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106
Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIAS------------------- 197
             PLH AA  G+ ++ + LI +GA + +    G TPL IA                    
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI 166
Query: 198 -------------------HFGQLNMVRY----------------------LVENGANVN 216
                              + G +N VR+                      L++   +VN
Sbjct: 167 EAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN 226
Query: 217 ATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQK--LGYIS 269
                G+TPLH A+  G+     +L+       A    GQTA ++A +  LGY+ 
Sbjct: 227 IKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLE 281

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 7/149 (4%)
Query: 84  DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI 143
           + ++N   TPLH+A       IAE L+    +   +     TPLH+AC+ G +A V +L 
Sbjct: 39  NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLT 98
Query: 144 SKGAN------IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKA-GFTPLHIA 196
                      ++A   +G T LH A+  G+  ++++L+  GA + ++    G T LH+A
Sbjct: 99  QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 158
Query: 197 SHFGQLNMVRYLVENGANVNATTNLGYTP 225
                 ++V  L++ GA+VN  T  GY+P
Sbjct: 159 VDLQNPDLVSLLLKCGADVNRVTYQGYSP 187

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 78/172 (45%), Gaps = 16/172 (9%)
Query: 114 ANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVID 173
           A +N Q     TPLH+A    +  + E L+  G + E +   G TPLH A   G    + 
Sbjct: 36  AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVG 95
Query: 174 ILIEKGAA--LYSKTKA----GFTPLHIASHFGQLNMVRYLVENGANVNATTNL-GYTPL 226
           +L +      L+S  KA    G T LH+AS  G L +V  LV  GA+VNA     G T L
Sbjct: 96  VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL 155
Query: 227 HQASQQGRVLIIDLLLGAGAQPNATT---------NHGQTALNIAQKLGYIS 269
           H A       ++ LLL  GA  N  T           G+ +  I Q+LG ++
Sbjct: 156 HLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT 207

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 196 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHG 255
           A+  GQ + VR L+ NGA+VNA    GYTPLH A+++G + I+++LL AGA  NA    G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 256 QTALNIA 262
           +TA +I+
Sbjct: 69  KTAFDIS 75

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 7/149 (4%)
Query: 84  DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI 143
           + ++N   TPLH+A       IAE L+    +   +     TPLH+AC+ G +A V +L 
Sbjct: 36  NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLT 95
Query: 144 SKGAN------IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKA-GFTPLHIA 196
                      ++A   +G T LH A+  G+  ++++L+  GA + ++    G T LH+A
Sbjct: 96  QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 155
Query: 197 SHFGQLNMVRYLVENGANVNATTNLGYTP 225
                 ++V  L++ GA+VN  T  GY+P
Sbjct: 156 VDLQNPDLVSLLLKCGADVNRVTYQGYSP 184

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 78/172 (45%), Gaps = 16/172 (9%)
Query: 114 ANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVID 173
           A +N Q     TPLH+A    +  + E L+  G + E +   G TPLH A   G    + 
Sbjct: 33  AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVG 92
Query: 174 ILIEKGAA--LYSKTKA----GFTPLHIASHFGQLNMVRYLVENGANVNATTNL-GYTPL 226
           +L +      L+S  KA    G T LH+AS  G L +V  LV  GA+VNA     G T L
Sbjct: 93  VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL 152
Query: 227 HQASQQGRVLIIDLLLGAGAQPNATT---------NHGQTALNIAQKLGYIS 269
           H A       ++ LLL  GA  N  T           G+ +  I Q+LG ++
Sbjct: 153 HLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT 204

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 93  PLHIAAHYGNT-NIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANI-- 149
           PLH A        + ELL  K + +  + +    PLH +  +    +   L+SK  N+  
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 150 -EAKTRDGLTPLHCAARSGHDNVIDILIEK--GAALYSKTKAGFTPLHIASHFGQLNMVR 206
            +     G TP H A   G+  V+  L ++     L   T  G T LH+A       + +
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 207 YLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP-NATTNHGQTAL 259
           +L+ENGA+V         PLH+A+  G + +I+LL G G    N     G T L
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 55/100 (55%)
Query: 156 GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANV 215
           G T LH A+  G    ++ L++ G+    K  AG+TPLH A + G L +V  L+++ A V
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 216 NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHG 255
           N T     +PLH A++ G V I+ LLL  GA  NA    G
Sbjct: 70  NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG 109

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 84/184 (45%), Gaps = 8/184 (4%)
Query: 45  AVLLENDTKGKVKLPALHIXXXXXXXXXXXXXXENDHSPDVKSNSHFTPLHIAAHYGNTN 104
           ++LL+ D  G++ L                   EN +  D   +S +TP HIA   GN  
Sbjct: 27  SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLE 86
Query: 105 IAELLIQK--HANVNNQAKHNITPLHVAC--KWGKVAMVELLISKGANIEAKTRDGLTPL 160
           + + L  +    ++N      +T LH+A   KW +V+  + LI  GA++  K +    PL
Sbjct: 87  VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS--QFLIENGASVRIKDKFNQIPL 144
Query: 161 HCAARSGHDNVIDILIEKG-AALYSKTKAGFTPLHIASHFGQLNMVRYLVEN-GANVNAT 218
           H AA  G   +I++L   G +A+  + K G+TPL  A   G  +    LVE  GA  +  
Sbjct: 145 HRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV 204
Query: 219 TNLG 222
            N G
Sbjct: 205 DNKG 208

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 93  PLHIAAHYGNT-NIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANI-- 149
           PLH A        + ELL  K + +  + +    PLH +  +    +   L+SK  N+  
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 150 -EAKTRDGLTPLHCAARSGHDNVIDILIEK--GAALYSKTKAGFTPLHIASHFGQLNMVR 206
            +     G TP H A   G+  V+  L ++     L   T  G T LH+A       + +
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 207 YLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP-NATTNHGQTAL 259
           +L+ENGA+V         PLH+A+  G + +I+LL G G    N     G T L
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 93  PLHIAAHYGNT-NIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANI-- 149
           PLH A        + ELL  K + +  + +    PLH +  +    +   L+SK  N+  
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 150 -EAKTRDGLTPLHCAARSGHDNVIDILIEK--GAALYSKTKAGFTPLHIASHFGQLNMVR 206
            +     G TP H A   G+  V+  L ++     L   T  G T LH+A       + +
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 207 YLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP-NATTNHGQTAL 259
           +L+ENGA+V         PLH+A+  G + +I+LL G G    N     G T L
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 1/157 (0%)
Query: 86  KSNSHFTPLHIAAHYGNTNIAELLIQKHA-NVNNQAKHNITPLHVACKWGKVAMVELLIS 144
           + N+  TPLH A       + ++L++  A N+N +     TPL +A +     MVE LI+
Sbjct: 80  QDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIT 139
Query: 145 KGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNM 204
             A+I A    G T LH AA   +   ++IL+   A   ++     TPL +A+  G    
Sbjct: 140 ADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEA 199
Query: 205 VRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 241
            + L++N AN   T ++   P   AS++    I+ LL
Sbjct: 200 SKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 236

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 17/128 (13%)
Query: 156 GLTPLHCAA------RSGHD---------NVIDILIEKGAAL-YSKTKAGFTPLHIASHF 199
           GLTPL  AA       +G D          VI  L+ +GA L  +  K G T LH+A+ F
Sbjct: 2   GLTPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARF 61
Query: 200 GQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL-GAGAQPNATTNHGQTA 258
            + +  + L++ GA+ N+  N G TPLH A     + +  +LL       NA  + G T 
Sbjct: 62  ARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTP 121
Query: 259 LNIAQKLG 266
           L +A +L 
Sbjct: 122 LILAARLA 129

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Query: 91  FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
           FTPL  A+ +G       L++  A+ +  AK   + L +A   G   +V LL+ +  +I 
Sbjct: 37  FTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDIN 96
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
               +G TPL  A R  H   ++ L+ +GA L ++  +G+TP+ +A   G    V+ ++E
Sbjct: 97  IYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG-YRKVQQVIE 155
Query: 211 N 211
           N
Sbjct: 156 N 156

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Query: 143 ISKGANIEAKTRD-GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQ 201
           + KG N+  K  + G TPL  A+  G    +  L+E GA  +   K   + L +AS  G 
Sbjct: 22  LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81
Query: 202 LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNI 261
            ++V  L+E   ++N     G TPL  A +   V  ++ LL  GA      + G T +++
Sbjct: 82  TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDL 141
Query: 262 AQKLGY 267
           A  LGY
Sbjct: 142 AVALGY 147

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 42/69 (60%)
Query: 93  PLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK 152
           PLH AA  G   I E L+ K A++N   KH+ITPL  A   G V+ V+LL+SKGA+   K
Sbjct: 38  PLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK 97
Query: 153 TRDGLTPLH 161
             DGLT L 
Sbjct: 98  GPDGLTALE 106

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 48/98 (48%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
           A ++G  + +   + KG  +    + G  PLH A+  GQL ++ +L+  GA++NA     
Sbjct: 9   ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALN 260
            TPL  A  +G V  + LLL  GA        G TAL 
Sbjct: 69  ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%)
Query: 154 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA 213
            +G TPL  AA  G   V++ L++ GA      K   + L +A   G  ++V+ L++ G 
Sbjct: 34  EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 93
Query: 214 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYIS 269
           +VN     G TPL  A     V  + +LL +GA P   T+ G  ++++A  LGY S
Sbjct: 94  DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRS 149

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 100 YGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTP 159
           +G+  +A  L+++ A+ N Q     +P+H A + G +  +++L+  GA++ A    G  P
Sbjct: 53  FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLP 112
Query: 160 LHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
           +H A R GH +V+  L  + + L+ +  +G TPL +A   G  N++  L
Sbjct: 113 IHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDIL 160

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 133 WGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTP 192
           +G  A+   L+ +GA+   +   G +P+H AAR+G  + + +L+E GA + +    G  P
Sbjct: 53  FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLP 112
Query: 193 LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
           +H+A   G  ++V +L    ++++     G TPL  A Q+G   ++D+L G
Sbjct: 113 IHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDILQG 162

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 55/96 (57%), Gaps = 9/96 (9%)
Query: 175 LIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR 234
           L+++GA+   +  +G +P+H A+  G L+ ++ LVE+GA+VNA  + G  P+H A ++G 
Sbjct: 62  LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 235 VLIIDLLLGAGAQPNATTNH----GQTALNIAQKLG 266
             ++  L      P +  +H    G T L +A++ G
Sbjct: 122 SSVVSFL-----APESDLHHRDASGLTPLELARQRG 152

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%)
Query: 154 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA 213
            +G TPL  AA  G   V++ L++ GA      K   + L +A   G  ++V+ L++ G 
Sbjct: 50  EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 109
Query: 214 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYIS 269
           +VN     G TPL  A     V  + +LL +GA P   T+ G  ++++A  LGY S
Sbjct: 110 DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRS 165

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%)
Query: 154 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA 213
            +G TPL  AA  G   V++ L++ GA      K   + L +A   G  ++V+ L++ G 
Sbjct: 32  EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 91
Query: 214 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYIS 269
           +VN     G TPL  A     V  + +LL +GA P   T+ G  ++++A  LGY S
Sbjct: 92  DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRS 147

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 41/66 (62%)
Query: 93  PLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK 152
           PLH AA  G   I E L+ K A++N   KH+ITPL  A   G V+ V+LL+SKGA+   K
Sbjct: 43  PLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK 102
Query: 153 TRDGLT 158
             DGLT
Sbjct: 103 GPDGLT 108

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 47/98 (47%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
           A ++G  + +   + KG  +    + G  PLH A+  GQL ++ +L+  GA++NA     
Sbjct: 14  ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALN 260
            TPL  A  +G V  + LLL  GA        G TA  
Sbjct: 74  ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFE 111

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 100 YGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTP 159
           +G+  +A  L+++ A+ N Q     +P+H A + G +  +++L+  GA++ A    G  P
Sbjct: 51  FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLP 110
Query: 160 LHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
           +H A R GH +V+  L  + + L+ +  +G TPL +A   G  N++  L
Sbjct: 111 IHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDIL 158

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 133 WGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTP 192
           +G  A+   L+ +GA+   +   G +P+H AAR+G  + + +L+E GA + +    G  P
Sbjct: 51  FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLP 110
Query: 193 LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
           +H+A   G  ++V +L    ++++     G TPL  A Q+G   ++D+L G
Sbjct: 111 IHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDILQG 160

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 55/96 (57%), Gaps = 9/96 (9%)
Query: 175 LIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR 234
           L+++GA+   +  +G +P+H A+  G L+ ++ LVE+GA+VNA  + G  P+H A ++G 
Sbjct: 60  LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 235 VLIIDLLLGAGAQPNATTNH----GQTALNIAQKLG 266
             ++  L      P +  +H    G T L +A++ G
Sbjct: 120 SSVVSFL-----APESDLHHRDASGLTPLELARQRG 150

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 47/79 (59%)
Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
           AAR+G D+ + IL+  GA + +K K G TPLH+A+  G L +V+ L+E GA+VNA    G
Sbjct: 13  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 223 YTPLHQASQQGRVLIIDLL 241
            T    +   G   + ++L
Sbjct: 73  KTAFDISIDNGNEDLAEIL 91

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 91  FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
           FTPL  A+ +G       L++  A+ +  AK   + L +A   G   +V LL+ +  +I 
Sbjct: 37  FTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDIN 96
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
               +G TPL  A    H   ++ L+ +GA L ++  +G+TP+ +A   G    V+ ++E
Sbjct: 97  IYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG-YRKVQQVIE 155
Query: 211 N 211
           N
Sbjct: 156 N 156

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 143 ISKGANIEAKTRD-GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQ 201
           + KG N+  K  + G TPL  A+  G    +  L+E GA  +   K   + L +AS  G 
Sbjct: 22  LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81
Query: 202 LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNI 261
            ++V  L+E   ++N     G TPL  A     V  ++ LL  GA      + G T +++
Sbjct: 82  TDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDL 141
Query: 262 AQKLGY 267
           A  LGY
Sbjct: 142 AVALGY 147

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 2/126 (1%)
Query: 83  PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELL 142
           PD  +    T L +   +G+T IA  L+++ A+ N Q     +P+H A + G +  +++L
Sbjct: 29  PDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVL 87
Query: 143 ISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQL 202
           +  GA++      G  P+H A + GH  V+  L  + + L+ +   G TPL +A   G  
Sbjct: 88  VEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQ 146
Query: 203 NMVRYL 208
           ++V  L
Sbjct: 147 DLVDIL 152

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 133 WGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTP 192
           +G  A+   L+ +GA+   +   G +P+H AAR+G  + + +L+E GA +      G  P
Sbjct: 45  FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 104
Query: 193 LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
           +H+A   G   +V +L    ++++     G TPL  A Q+G   ++D+L G
Sbjct: 105 IHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 175 LIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR 234
           L+++GA+   +  +G +P+H A+  G L+ ++ LVE+GA+VN     G  P+H A Q+G 
Sbjct: 54  LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 113
Query: 235 VLIIDLLLGAGAQPNATTNHGQTALNIAQKLG 266
             ++   L A +  +     G T L +A + G
Sbjct: 114 TAVVS-FLAAESDLHRRDARGLTPLELALQRG 144

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 2/126 (1%)
Query: 83  PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELL 142
           PD  +    T L +   +G+T IA  L+++ A+ N Q     +P+H A + G +  +++L
Sbjct: 35  PDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVL 93
Query: 143 ISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQL 202
           +  GA++      G  P+H A + GH  V+  L  + + L+ +   G TPL +A   G  
Sbjct: 94  VEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQ 152
Query: 203 NMVRYL 208
           ++V  L
Sbjct: 153 DLVDIL 158

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Query: 133 WGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTP 192
           +G  A+   L+ +GA+   +   G +P+H AAR+G  + + +L+E GA +      G  P
Sbjct: 51  FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 110
Query: 193 LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248
           +H+A   G   +V +L    ++++     G TPL  A Q+G   ++D+L G    P
Sbjct: 111 IHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGHMVAP 165

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 175 LIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR 234
           L+++GA+   +  +G +P+H A+  G L+ ++ LVE+GA+VN     G  P+H A Q+G 
Sbjct: 60  LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 119
Query: 235 VLIIDLLLGAGAQPNATTNHGQTALNIAQKLG 266
             ++   L A +  +     G T L +A + G
Sbjct: 120 TAVVS-FLAAESDLHRRDARGLTPLELALQRG 150

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 48/79 (60%)
Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
           A + G+   V +L++ GA++ AK ++G TPLH AAR+GH  V+ +L+E GA + ++ K G
Sbjct: 31  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 190 FTPLHIASHFGQLNMVRYL 208
            T   I+   G  ++   L
Sbjct: 91  KTAFDISIDNGNEDLAEIL 109

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 196 ASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHG 255
           A+  GQ + VR L+ NGA+V A    G TPLH A++ G + ++ LLL AGA   A    G
Sbjct: 31  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 256 QTALNIA 262
           +TA +I+
Sbjct: 91  KTAFDIS 97

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 91  FTPLHIA-----AHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK 145
           F PL +A     +  G  ++ + +I +  + +      IT LH A   G   +V+ L+  
Sbjct: 33  FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF 92
Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 186
           G N+ A   DG TPLHCAA   +  V   L+E GAA+++ T
Sbjct: 93  GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 134 GKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPL 193
           G+  +V+ +I +  +      +G+T LH A  +GH  ++  L++ G  + +    G+TPL
Sbjct: 48  GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 194 HIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQ 232
           H A+    + + ++LVE+GA V A T   Y+ +  A+ +
Sbjct: 108 HCAASCNNVQVCKFLVESGAAVFAMT---YSDMQTAADK 143

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248
           G T LH A   G   +V++LV+ G NVNA  + G+TPLH A+    V +   L+ +GA  
Sbjct: 70  GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Query: 249 NATT-NHGQTALNIAQKL--GY 267
            A T +  QTA +  +++  GY
Sbjct: 130 FAMTYSDMQTAADKCEEMEEGY 151

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
Query: 148 NIEAKTRDGLTPLHCAA-RSGHDNVID--ILIEKGAALY--------SKTKAGFTPLHIA 196
           +IE   R+G T L   A   G D V    +L+EKGA +         S+   G T LH A
Sbjct: 227 DIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA 286
Query: 197 SHFGQLNMVRYLV-ENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHG 255
           +      +V+YLV E G+N +     G TP+  A+Q+GR+ ++  L+  GA   A     
Sbjct: 287 AQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATD 346
Query: 256 QTALNIAQ 263
            TA  +AQ
Sbjct: 347 HTARQLAQ 354

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 91  FTPLHI---AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGA 147
           F PL +   ++  G  ++ + +I +  + +      IT LH A   G   +V+ L+  G 
Sbjct: 35  FNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV 94
Query: 148 NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 186
           N+ A   DG TPLHCAA   +  V   L+E GAA+++ T
Sbjct: 95  NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 134 GKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPL 193
           G+  +V+ +I +  +      +G+T LH A  +GH  ++  L++ G  + +    G+TPL
Sbjct: 48  GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 194 HIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQ 232
           H A+    + + ++LVE+GA V A T   Y+ +  A+ +
Sbjct: 108 HCAASCNNVQVCKFLVESGAAVFAMT---YSDMQTAADK 143

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248
           G T LH A   G   +V++LV+ G NVNA  + G+TPLH A+    V +   L+ +GA  
Sbjct: 70  GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Query: 249 NATT-NHGQTALNIAQKL--GY 267
            A T +  QTA +  +++  GY
Sbjct: 130 FAMTYSDMQTAADKCEEMEEGY 151

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 7/157 (4%)
Query: 92  TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGA-NIE 150
           TPL+IA H  +  IA+ LI + A++N Q   + +P   A   G+  ++  ++     ++ 
Sbjct: 41  TPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLN 100
Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSKTKAGFTPLHIASHFGQLN-----M 204
              R G   L  AA  GH + + +L+E G   +  +   G+T L  A    + N     +
Sbjct: 101 KHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI 160
Query: 205 VRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 241
           V+ L+ENGA+ +   N G T +  A+Q+G   I  +L
Sbjct: 161 VKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
           T L V  K G   +   L+ +GAN + K R G   +H AAR+G  + +  L+E  A +  
Sbjct: 40  TALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNI 98
Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGA-NVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
           +   G  PLH+A+  G L +V +LV++ A NV    + G T    A   GR  ++ L+  
Sbjct: 99  EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
Query: 244 AGA 246
            GA
Sbjct: 159 NGA 161

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 167 GHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPL 226
           G+  +   L+ +GA    K + GF  +H A+  G L+ ++ L+EN A+VN   N G  PL
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPL 107
Query: 227 HQASQQGRVLIIDLLLGAGAQPNATTNH-GQTALNIAQKLG 266
           H A+++G + +++ L+   A      NH G TA ++A+  G
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG 148

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 84/222 (37%), Gaps = 51/222 (22%)
Query: 92  TPLHIAAHYGNTNIAELLI---QKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGAN 148
           T LH+A  + +    + L+     H  ++ Q     T LH+A   G+ + VE L + GA 
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Query: 149 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA--------------------------- 181
           +    R G T LH A R        +L++   +                           
Sbjct: 71  VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAV 130
Query: 182 --------------------LYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN-ATTN 220
                               L ++   G TPLH+A       MVR L + GA++N     
Sbjct: 131 DSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT 190
Query: 221 LGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
            G TPLH A +     +++LLL AGA P A    G+T L  A
Sbjct: 191 CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 84/222 (37%), Gaps = 51/222 (22%)
Query: 92  TPLHIAAHYGNTNIAELLI---QKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGAN 148
           T LH+A  + +    + L+     H  ++ Q     T LH+A   G+ + VE L + GA 
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Query: 149 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA--------------------------- 181
           +    R G T LH A R        +L++   +                           
Sbjct: 71  VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAV 130
Query: 182 --------------------LYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN-ATTN 220
                               L ++   G TPLH+A       MVR L + GA++N     
Sbjct: 131 DSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT 190
Query: 221 LGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
            G TPLH A +     +++LLL AGA P A    G+T L  A
Sbjct: 191 CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
           T L V  K G   +   L+ +GAN + K R G   +H AAR+G  + +  L+E  A +  
Sbjct: 40  TALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNI 98
Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGA-NVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
           +   G  PLH+A+  G L +V +LV++ A NV    + G T    A   GR  ++ L+  
Sbjct: 99  EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
Query: 244 AGA 246
            GA
Sbjct: 159 NGA 161

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 167 GHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPL 226
           G+  +   L+ +GA    K + GF  +H A+  GQL+ ++ L+E  A+VN   N G  PL
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 227 HQASQQGRVLIIDLLLGAGAQPNATTNH-GQTALNIAQKLG 266
           H A+++G + +++ L+   A      NH G TA ++A+  G
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG 148

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
           T L V  K G   +   L+ +GAN + K R G   +H AAR+G  + +  L+E  A +  
Sbjct: 40  TALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI 98
Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGA-NVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
           +   G  PLH+A+  G L +V +LV++ A NV    + G T    A   GR  ++ L+  
Sbjct: 99  EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
Query: 244 AGA 246
            GA
Sbjct: 159 NGA 161

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 167 GHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPL 226
           G+  +   L+ +GA    K + GF  +H A+  G L+ ++ L+E  A+VN   N G  PL
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 227 HQASQQGRVLIIDLLLGAGAQPNATTNH-GQTALNIAQKLG 266
           H A+++G + +++ L+   A      NH G TA ++A+  G
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG 148

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
           T L V  K G   +   L+ +GAN + K R G   +H AAR+G  + +  L+E  A +  
Sbjct: 40  TALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI 98
Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGA-NVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
           +   G  PLH+A+  G L +V +LV++ A NV    + G T    A   GR  ++ L+  
Sbjct: 99  EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
Query: 244 AGA 246
            GA
Sbjct: 159 NGA 161

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 167 GHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPL 226
           G+  +   L+ +GA    K + GF  +H A+  G L+ ++ L+E  A+VN   N G  PL
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 227 HQASQQGRVLIIDLLLGAGAQPNATTNH-GQTALNIAQKLG 266
           H A+++G + +++ L+   A      NH G TA ++A+  G
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG 148

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 82  SPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHN---ITPLHVACKWGKVAM 138
           SP     +   PL +      T   E++ Q    +N+ ++ N   IT LH A      ++
Sbjct: 10  SPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSI 69
Query: 139 VELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDI-LIEKGAALYSKT 186
           V+ LI+ GAN+ +    G TPLHCAA S +D VI + L++ GAA+++ T
Sbjct: 70  VDFLITAGANVNSPDSHGWTPLHCAA-SCNDTVICMALVQHGAAIFATT 117

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 46/86 (53%)
Query: 134 GKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPL 193
           G++ +V+  + +  +      +G+T LH A    + +++D LI  GA + S    G+TPL
Sbjct: 32  GELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPL 91
Query: 194 HIASHFGQLNMVRYLVENGANVNATT 219
           H A+      +   LV++GA + ATT
Sbjct: 92  HCAASCNDTVICMALVQHGAAIFATT 117

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
           T L V  K G   +   L+ +GAN + K R G   +H AAR+G  + +  L+E  A +  
Sbjct: 40  TALQV-MKLGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNI 98
Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGA-NVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
           +   G  PLH+A+  G L +V +LV++ A NV    + G T    A   GR  ++ L+  
Sbjct: 99  EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
Query: 244 AGA 246
            GA
Sbjct: 159 NGA 161

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 167 GHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPL 226
           G+  +   L+ +GA    K + G   +H A+  G L+ ++ L+E  A+VN   N G  PL
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 227 HQASQQGRVLIIDLLLGAGAQPNATTNH-GQTALNIAQKLG 266
           H A+++G + +++ L+   A      NH G TA ++A+  G
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG 148

>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold Length = 135

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 63/123 (51%)
Query: 142 LISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQ 201
           L ++  +++A+  DG TPL  AAR   + +++ LI   A + +    G + LH A+    
Sbjct: 1   LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 202 LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNI 261
           ++    L++NGAN +   N   TPL  A+++G      +LL   A  + T +  +   +I
Sbjct: 61  VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 120
Query: 262 AQK 264
           AQ+
Sbjct: 121 AQE 123

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 93  PLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK 152
           PLH AA  GN +     +     VN   K   T L+ AC  G   +VE L ++  NIE  
Sbjct: 76  PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQ-PNIELN 134
Query: 153 TRDGL--TPLHCAARSGHDNVIDILIEKGA 180
            ++ L  T LH AA  G+ +++ +L+ KGA
Sbjct: 135 QQNKLGDTALHAAAWKGYADIVQLLLAKGA 164

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query: 159 PLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLV-ENGANVNA 217
           PLH AA+ G+ + +   ++    +    KAG T L+ A H G  ++V  L  +    +N 
Sbjct: 76  PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 218 TTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGY 267
              LG T LH A+ +G   I+ LLL  GA+ +          NI +KL +
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR--------NIEKKLAF 177

>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structure Of The Cdk6-P16ink4a Tumor Suppressor Complex Length = 156

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Query: 94  LHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKT 153
           L  AA  G       L++  AN N    +   P+ V    G   + ELL+  GA      
Sbjct: 16  LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCAD 74
Query: 154 RDGLT-PLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
              LT P+H AAR G  + + +L   GA L  +   G  P+ +A   G  ++ RYL
Sbjct: 75  PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 18/122 (14%)
Query: 92  TPLHIAAHYGNTNIAELLIQKHANV-----NNQAKHNITPLHVACKWGKVAMVELLISKG 146
           T LHIAA Y N   A +L++    +      ++     T LH+A     V +V  L+++G
Sbjct: 39  TALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARG 98
Query: 147 ANIEAKTRD-------------GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPL 193
           A++ A+                G  PL  AA  G + ++ +LIE GA + ++   G T L
Sbjct: 99  ASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158
Query: 194 HI 195
           HI
Sbjct: 159 HI 160

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 125 TPLHVAC-KWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAAL- 182
           TP   A  K  + A+ +LL  +  +++A   +G T L   A  G D  + +L E GA L 
Sbjct: 47  TPWWTAARKADEQALSQLLEDR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 104
Query: 183 YSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQ 231
           +   + G T LH+A+ + +  +V  LVE GA++      G T L  A +
Sbjct: 105 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 153

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 158 TPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN- 216
           TP   AAR   +  +  L+E    + +  + G T L   +  G    VR L E GA+++ 
Sbjct: 47  TPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105
Query: 217 ATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKL 265
                G T LH A+   R  +++ L+  GA        G TAL +A+++
Sbjct: 106 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 154

>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major Length = 364

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 27/130 (20%)
Query: 160 LHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATT 219
           +H AAR G  + +  LIE G +   + + G T LH+A  FG ++  +YL    A+V    
Sbjct: 24  IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYL----ASVGEVH 79
Query: 220 NL--GYTPLHQASQQGRV-LIIDLLLGA---GAQPNATTNH-----------------GQ 256
           +L  G  P+H A    +  L++ L+ GA   G  P +  N                  GQ
Sbjct: 80  SLWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQ 139
Query: 257 TALNIAQKLG 266
           TAL+    LG
Sbjct: 140 TALHWCVGLG 149

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 125 TPLHVAC-KWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAAL- 182
           TP   A  K  + A+ +LL  +  +++A   +G T L   A  G D  + +L E GA L 
Sbjct: 46  TPWWTAARKADEQALSQLLEDR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 103
Query: 183 YSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQ 231
           +   + G T LH+A+ + +  +V  LVE GA++      G T L  A +
Sbjct: 104 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 152

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 114 ANVN--NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNV 171
           A+VN  N  + N TPL  A     +   E L+  GAN+      G  PLH A   GH  +
Sbjct: 224 ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGL 283
Query: 172 IDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
             + +++GA L ++   G  PL IA      ++V  L
Sbjct: 284 ACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 191 TPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 250
           TPL  A+    L    +L++NGANVN   + G  PLH A+  G   +  L L  GA   A
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 251 TTNHGQTALNIAQK 264
             + G+  L IA +
Sbjct: 297 RDSEGRDPLTIAME 310

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 114 ANVN--NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNV 171
           A+VN  N  + N TPL  A     +   E L+  GAN+      G  PLH A   GH  +
Sbjct: 224 ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGL 283
Query: 172 IDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
             + +++GA L ++   G  PL IA      ++V  L
Sbjct: 284 ACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 191 TPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 250
           TPL  A+    L    +L++NGANVN   + G  PLH A+  G   +  L L  GA   A
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 251 TTNHGQTALNIAQK 264
             + G+  L IA +
Sbjct: 297 RDSEGRDPLTIAME 310

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 114 ANVN--NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNV 171
           A+VN  N  + N TPL  A     +   E L+  GAN+      G  PLH A   GH  +
Sbjct: 224 ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGL 283
Query: 172 IDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
             + +++GA L ++   G  PL IA      ++V  L
Sbjct: 284 ACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 191 TPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 250
           TPL  A+    L    +L++NGANVN   + G  PLH A+  G   +  L L  GA   A
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 251 TTNHGQTALNIAQK 264
             + G+  L IA +
Sbjct: 297 RDSEGRDPLTIAME 310

>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 79  NDHSPDVKSNSHFTPLHIAAH---YGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGK 135
           N H PD       T LH+A       + +I + L+Q   N++ Q     T LH  C    
Sbjct: 164 NGHEPDE------TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN 217
Query: 136 VAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
              ++LL+   A+IE     G TPL  A R  H++  ++L +
Sbjct: 218 AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259

>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20 Structures Length = 156

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Query: 94  LHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKT 153
           L  AA  G       L++  A  N    +   P+ V    G   + ELL+  GA      
Sbjct: 16  LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCAD 74
Query: 154 RDGLT-PLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
              LT P+H AAR G  + + +L   GA L  +   G  P+ +A   G  ++ RYL
Sbjct: 75  PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 7/149 (4%)
Query: 125 TPLHVACKWGKVAMVELLISKG-ANIEAKTRDGLTPLHCAARSGHDNVIDI-----LIEK 178
           T LH +       +V+ L+  G   ++ + R G +P+   A +      DI     L   
Sbjct: 113 TALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRL 172
Query: 179 GAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII 238
           G      ++AG T L +A   G++++V+ L+   A+VN   + G T L  A + G   I 
Sbjct: 173 GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIA 232
Query: 239 DLLLGA-GAQPNATTNHGQTALNIAQKLG 266
            LLL       + T   G TAL +A   G
Sbjct: 233 GLLLAVPSCDISLTDRDGSTALMVALDAG 261

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	318
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-104
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-93
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-90
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-83
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-29
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-85
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-51
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-79
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-75
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-74
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-70
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-61
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-79
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-72
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-66
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-55
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-34
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-77
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-76
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-76
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-62
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-54
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-54
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-28
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-74
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-67
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-55
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-32
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-73
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-71
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-67
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-47
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-72
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-72
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-69
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-65
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-55
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-72
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-70
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-49
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-72
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-72
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-66
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-55
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-54
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-38
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-72
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-71
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-59
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-33
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-70
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-68
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-62
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-38
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-25
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-70
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-66
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-62
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-62
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-33
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-25
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-69
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-63
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-62
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-22
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-08
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-69
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-68
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-43
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-67
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-65
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-41
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-35
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-65
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-58
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-57
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-41
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-65
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-59
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-53
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-49
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-38
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-64
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-59
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-53
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-33
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-62
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-57
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-49
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-43
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-17
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-61
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-59
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-47
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-37
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	9e-36
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-60
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-58
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-50
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-42
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-42
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-60
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-59
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-56
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-55
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-41
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-19
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-58
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-57
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-49
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-41
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-10
2rfa_A	232	Transient receptor potential cation channel subfa	2e-56
2rfa_A	232	Transient receptor potential cation channel subfa	9e-53
2rfa_A	232	Transient receptor potential cation channel subfa	2e-26
2rfa_A	232	Transient receptor potential cation channel subfa	1e-14
2rfa_A	232	Transient receptor potential cation channel subfa	4e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-55
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-54
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-50
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	9e-41
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-55
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-55
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-50
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-55
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-49
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-49
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-42
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-35
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-55
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-53
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-48
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-41
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-35
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-54
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-51
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-48
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-40
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-27
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-53
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-50
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-39
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-39
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-27
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-53
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-48
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-47
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-38
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-32
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-53
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-50
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-19
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-51
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-46
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-46
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-43
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-31
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-50
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-48
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-41
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-41
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-14
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-48
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-46
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-42
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-41
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-27
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-14
2etb_A	256	Transient receptor potential cation channel subfam	2e-47
2etb_A	256	Transient receptor potential cation channel subfam	2e-41
2etb_A	256	Transient receptor potential cation channel subfam	9e-29
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-47
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-47
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-42
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-37
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-23
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-45
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-36
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-35
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-29
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-44
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-43
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-40
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-31
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-27
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-08
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-43
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-41
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-41
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-36
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-27
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-10
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-09
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-09
2pnn_A	273	Transient receptor potential cation channel subfa	2e-43
2pnn_A	273	Transient receptor potential cation channel subfa	5e-39
2pnn_A	273	Transient receptor potential cation channel subfa	2e-34
2pnn_A	273	Transient receptor potential cation channel subfa	4e-27
2pnn_A	273	Transient receptor potential cation channel subfa	3e-19
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-43
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-41
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-37
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-36
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-19
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-42
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-36
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-28
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-17
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-38
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-34
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-30
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-24
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-35
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-34
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-33
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-27
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-35
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-31
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-27
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-34
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-34
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-30
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-26
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-20
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-19
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-17
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-16
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-16
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-18
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-17
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-15
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-14
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-10
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	9e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-17
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-16
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	7e-15
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-13
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-07
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-14
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	8e-14
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-13
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  310 bits (797), Expect = e-104
 Identities = 135/318 (42%), Positives = 193/318 (60%), Gaps = 9/318 (2%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
           +AA+E H   V  LL K  +Q   T+ GFTPL VA + G  RV  +LLE     +  GK 
Sbjct: 119 IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN 178

Query: 57  KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
            L  LH+A   ++     LLL    SP   + + +TPLHIAA      +A  L+Q   + 
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238

Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
           N ++   +TPLH+A + G   MV LL+SK AN     + GLTPLH  A+ GH  V D+LI
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 298

Query: 177 EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
           + G  + + T+ G+TPLH+ASH+G + +V++L+++ A+VNA T LGY+PLHQA+QQG   
Sbjct: 299 KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD 358

Query: 237 IIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETTIVTTTVTTIEEKYRV 296
           I+ LLL  GA PN  ++ G T L IA++LGYISV + LK+VT+     T+   + +K+R+
Sbjct: 359 IVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTD----ETSFVLVSDKHRM 414

Query: 297 VAPEAMQEVYMSDSEDEG 314
             PE + E+ +  SEDEG
Sbjct: 415 SFPETVDEI-LDVSEDEG 431

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  282 bits (725), Expect = 3e-93
 Identities = 99/278 (35%), Positives = 148/278 (53%), Gaps = 4/278 (1%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
           MAA+  H  V +YLL          +D  TPL  A + GH  +V +LLEN    +     
Sbjct: 53  MAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA 112

Query: 57  KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
               LHIAA++   +    LLE + S    +   FTPLH+AA YG   +AELL+++ A+ 
Sbjct: 113 GHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP 172

Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
           N   K+ +TPLHVA     + +V+LL+ +G +  +   +G TPLH AA+     V   L+
Sbjct: 173 NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL 232

Query: 177 EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
           + G +  +++  G TPLH+A+  G   MV  L+   AN N     G TPLH  +Q+G V 
Sbjct: 233 QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVP 292

Query: 237 IIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           + D+L+  G   +ATT  G T L++A   G I +++ L
Sbjct: 293 VADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL 330

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  275 bits (706), Expect = 2e-90
 Identities = 97/278 (34%), Positives = 154/278 (55%), Gaps = 4/278 (1%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
           +A+   H  +V+ LL +G +  ++     TPL +A + GH  V   LL+N    + K K 
Sbjct: 20  VASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD 79

Query: 57  KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
               LH AA+        LLLEN+ +P++ + +  TPLHIAA  G+      L++K A+ 
Sbjct: 80  DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQ 139

Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
               K   TPLHVA K+GKV + ELL+ + A+  A  ++GLTPLH A    + +++ +L+
Sbjct: 140 ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLL 199

Query: 177 EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
            +G + +S    G+TPLHIA+   Q+ + R L++ G + NA +  G TPLH A+Q+G   
Sbjct: 200 PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE 259

Query: 237 IIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           ++ LLL   A  N     G T L++  + G++ V + L
Sbjct: 260 MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  257 bits (658), Expect = 3e-83
 Identities = 93/263 (35%), Positives = 139/263 (52%), Gaps = 4/263 (1%)

Query: 16  SKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCK 71
           S G +     E G TPL VA   GH  +V  LL+     +         LH+AA+    +
Sbjct: 2   SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 61

Query: 72  AAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVAC 131
            A  LL+N    + K+    TPLH AA  G+TN+ +LL++ +AN N       TPLH+A 
Sbjct: 62  VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAA 121

Query: 132 KWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFT 191
           + G V  V  L+ K A+    T+ G TPLH AA+ G   V ++L+E+ A   +  K G T
Sbjct: 122 REGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLT 181

Query: 192 PLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNAT 251
           PLH+A H   L++V+ L+  G + ++    GYTPLH A++Q +V +   LL  G   NA 
Sbjct: 182 PLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 241

Query: 252 TNHGQTALNIAQKLGYISVIETL 274
           +  G T L++A + G+  ++  L
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALL 264

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  114 bits (288), Expect = 5e-29
 Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 16/160 (10%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
           + AQE H  V   L+  G      T  G+TPL VA   G+ ++V  LL++    + K K+
Sbjct: 284 LVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL 343

Query: 57  KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELL---IQKH 113
               LH AA++       LLL+N  SP+  S+   TPL IA   G  ++ ++L     + 
Sbjct: 344 GYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDET 403

Query: 114 ANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKT 153
           + V    KH ++             V+ ++    +   + 
Sbjct: 404 SFVLVSDKHRMSFPET---------VDEILDVSEDEGEEL 434

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  255 bits (655), Expect = 8e-85
 Identities = 67/276 (24%), Positives = 116/276 (42%), Gaps = 10/276 (3%)

Query: 1   MAAQENHDGVVRYLLSKGGN-----QTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGK 55
           M +  +H      L+ +G +           DG  P       G   +   L+ +     
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDW 60

Query: 56  VKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHAN 115
                +H AA      +   L+    + ++ +  H +PLH A   G+ +  ++L++  A 
Sbjct: 61  S---PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 117

Query: 116 VNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
           VN       TPL  AC  G    V LL+  GA+++ ++ D  +P+H AAR GH   ++ L
Sbjct: 118 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSL 176

Query: 176 IEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV 235
           I  G  +  K     TPL++A    Q   V+ L+E+GA+VN       +PLH   +    
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKG-QDSPLHAVVRTASE 235

Query: 236 LIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVI 271
            +  LL+  GA   A    G+  + +      ++ +
Sbjct: 236 ELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  168 bits (429), Expect = 8e-51
 Identities = 46/186 (24%), Positives = 75/186 (40%), Gaps = 11/186 (5%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN------DTKG 54
            A    H   V+ LL  G      T D  TPL  A   G    V +LL++      ++  
Sbjct: 98  EACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL 157

Query: 55  KVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHA 114
                 +H AA++   +    L+    + D K +   TPL++A         + L++  A
Sbjct: 158 AS---PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA 214

Query: 115 NVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDI 174
           +VN Q K   +PLH   +     +  LL+  GA+ +AK  +G  P+           +  
Sbjct: 215 DVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL-F 272

Query: 175 LIEKGA 180
           L  +GA
Sbjct: 273 LEREGA 278

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  244 bits (625), Expect = 2e-79
 Identities = 71/289 (24%), Positives = 114/289 (39%), Gaps = 28/289 (9%)

Query: 2   AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVK 57
           A   N + ++  L     N   +     TPL +A      R+V +LL++      K K  
Sbjct: 32  ARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGG 91

Query: 58  LPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN 117
           L  LH A      +   LLL++    +      FTPLH AA      +  LL+   A+  
Sbjct: 92  LVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT 151

Query: 118 NQAKHNITPLHVACKWGKVAMVEL---------------------LISKGANIEAKTRDG 156
               H  + + +A        +                        ++       + +  
Sbjct: 152 LVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSH 211

Query: 157 LTPLHCAARSGHDNVIDI---LIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA 213
            T LHCA  S H     +   L+ KGA +  K K   TPLH+A+     +++  L ++GA
Sbjct: 212 ETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271

Query: 214 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
            +NA  +LG T LH+A+  G +    LLL  G+ P+  +  G TA  + 
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  234 bits (599), Expect = 2e-75
 Identities = 72/298 (24%), Positives = 115/298 (38%), Gaps = 30/298 (10%)

Query: 7   HDG-VVRYLLSKGGNQTLATEDGFTPLAVAMQQGH-DRVVAVLLEN----DTKGKVKLPA 60
             G     L        L  E     L  A + G+ ++++A+L             K   
Sbjct: 2   EFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTP 61

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
           LH+AA  +  +   LLL++      K      PLH A  YG+  + ELL++  A VN   
Sbjct: 62  LHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD 121

Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSG------------- 167
               TPLH A    +V +  LL+S GA+       G + +  A                 
Sbjct: 122 LWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS 181

Query: 168 --------HDNVIDILIEKGAALYSKTKAGFTPLHIAS---HFGQLNMVRYLVENGANVN 216
                       +   +      + + ++  T LH A    H  +  +   L+  GANVN
Sbjct: 182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN 241

Query: 217 ATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
                  TPLH A+++    ++++L   GA+ NA  + GQTAL+ A   G++     L
Sbjct: 242 EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  232 bits (593), Expect = 2e-74
 Identities = 63/236 (26%), Positives = 99/236 (41%), Gaps = 18/236 (7%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
            AA +N   V   LLS G + TL    G + + +A        +    +  +        
Sbjct: 130 EAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS-------- 181

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAA---HYGNTNIAELLIQKHANVN 117
           L  AA++ D       L  +     +  SH T LH A    H     +AELL++K ANVN
Sbjct: 182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN 241

Query: 118 NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
            + K  +TPLHVA +     ++E+L   GA + A    G T LH AA +GH     +L+ 
Sbjct: 242 EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLS 301

Query: 178 KGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 233
            G+     +  GFT   + +       V+ ++     +  +       L +AS+ G
Sbjct: 302 YGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSDV--DYRLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  221 bits (565), Expect = 2e-70
 Identities = 57/264 (21%), Positives = 98/264 (37%), Gaps = 24/264 (9%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
            A    H  V   LL  G          FTPL  A  +    V ++LL +          
Sbjct: 97  NACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCH 156

Query: 57  KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
              A+ +A   +  +      +             + L  A       + + L       
Sbjct: 157 GKSAVDMAPTPELRERLTYEFKGH-----------SLLQAAREADLAKVKKTLAL-EIIN 204

Query: 117 NNQAKHNITPLHVACKWG---KVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVID 173
             Q + + T LH A       +  + ELL+ KGAN+  K +D +TPLH AA   H++V++
Sbjct: 205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVME 264

Query: 174 ILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 233
           +L + GA + +    G T LH A+  G L   R L+  G++ +  +  G+T     ++  
Sbjct: 265 VLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE-- 322

Query: 234 RVLIIDLLLGAGAQPNATTNHGQT 257
               +  +L        +    + 
Sbjct: 323 ---AVQQILSESTPMRTSDVDYRL 343

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  197 bits (504), Expect = 3e-61
 Identities = 52/231 (22%), Positives = 91/231 (39%), Gaps = 22/231 (9%)

Query: 68  DDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGN-TNIAELLIQKHANVNNQAKHNITP 126
           +  K+A  L +      +        L  AA  GN   +  LL   + N +       TP
Sbjct: 2   EFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTP 61

Query: 127 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT 186
           LH+A  + +V +V+LL+  GA++ AK + GL PLH A   GH  V ++L++ GA + +  
Sbjct: 62  LHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD 121

Query: 187 KAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR------------ 234
              FTPLH A+   ++ +   L+ +GA+       G + +  A                 
Sbjct: 122 LWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS 181

Query: 235 ---------VLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKI 276
                    +  +   L             +TAL+ A    +    +  ++
Sbjct: 182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAEL 232

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 66.7 bits (164), Expect = 1e-12
 Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 11/106 (10%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
           +AA+  H+ V+  L   G         G T L  A   GH +   +LL            
Sbjct: 253 VAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQ 312

Query: 57  KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGN 102
              A  +  +     A   +L    S  ++++     L  A+  G+
Sbjct: 313 GFTAAQMGNE-----AVQQILS--ESTPMRTSDVDYRLLEASKAGD 351

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  244 bits (625), Expect = 3e-79
 Identities = 41/284 (14%), Positives = 92/284 (32%), Gaps = 30/284 (10%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLL-ENDTKGKVKLP 59
           +A   N   +V  L+          E G  P ++  +     V  +       KG+    
Sbjct: 90  LAVMANKTDLVVALVEGA------KERGQMPESLLNECDEREVNEIGSHVKHCKGQT--- 140

Query: 60  ALHIAAK--KDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLI-----QK 112
           ALH       +  +   +L++   SP  K  +  TPL  A  + N    +L++     + 
Sbjct: 141 ALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKS 200

Query: 113 HANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVI 172
              ++   K   + LH A       +    +  G ++  +  +   PL+ + R+    + 
Sbjct: 201 SLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLT 260

Query: 173 DILIEKGAALY-------------SKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATT 219
             L++K                           +  A+   +  +++ L E    V  + 
Sbjct: 261 KELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSL 320

Query: 220 NLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQ 263
           N G     +  ++    +  + L   A     +     +  +++
Sbjct: 321 NTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  225 bits (577), Expect = 6e-72
 Identities = 55/296 (18%), Positives = 95/296 (32%), Gaps = 34/296 (11%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN--DTKGKVKL 58
           +AA++     VR L+  G + T+    G T L +A + G       L             
Sbjct: 26  VAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQ 85

Query: 59  PALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
             +H+A   +       L+E              P  +        + E         + 
Sbjct: 86  KPIHLAVMANKTDLVVALVEG------AKERGQMPESLLNECDEREVNE------IGSHV 133

Query: 119 QAKHNITPLHVACKWGK--VAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
           +     T LH     G   + M+++L+  GA+  AK +   TPL  A    +   +D+++
Sbjct: 134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMM 193

Query: 177 E-----KGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQ 231
           +         L    K G + LH A      ++    VE G +VN   N    PL+ + +
Sbjct: 194 DTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVR 253

Query: 232 QGRVLIIDLLLGAGAQ-------------PNATTNHGQTALNIAQKLGYISVIETL 274
              VL+   LL                             +  A       V++ L
Sbjct: 254 AAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLL 309

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  210 bits (538), Expect = 4e-66
 Identities = 48/262 (18%), Positives = 91/262 (34%), Gaps = 25/262 (9%)

Query: 24  ATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEN 79
           + ++    + VA ++G    V  L+E       + +    ALH+A K      A  L   
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLA-- 73

Query: 80  DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMV 139
                        P+H+A     T++   L++              P  +  +  +  + 
Sbjct: 74  SVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQ------MPESLLNECDEREVN 127

Query: 140 ELLISKGANIEAKTRDGLTPLHCAARSG--HDNVIDILIEKGAALYSKTKAGFTPLHIAS 197
           E+          K   G T LH     G  +  +I IL++ GA+  +K KA  TPL  A 
Sbjct: 128 EI------GSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAM 181

Query: 198 HFGQLNMVRYLVE-----NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATT 252
            F     +  +++     +   ++     G + LH A       +    +  G   N   
Sbjct: 182 EFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMED 241

Query: 253 NHGQTALNIAQKLGYISVIETL 274
           N     L ++ +   + + + L
Sbjct: 242 NEHTVPLYLSVRAAMVLLTKEL 263

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  183 bits (467), Expect = 2e-55
 Identities = 41/193 (21%), Positives = 72/193 (37%), Gaps = 16/193 (8%)

Query: 84  DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI 143
               + +   +H+AA  G T+    LI+   +   Q +   T LH+ACK+G V   + L 
Sbjct: 14  IKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLA 73

Query: 144 SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLN 203
           S G         G  P+H A  +   +++  L+E         + G  P  + +   +  
Sbjct: 74  SVGEVHSLW--HGQKPIHLAVMANKTDLVVALVEGAK------ERGQMPESLLNECDERE 125

Query: 204 MVRYLVENGANVNATTNLGYTPLHQASQQGRVL--IIDLLLGAGAQPNATTNHGQTALNI 261
           +           +     G T LH     G     +I +L+  GA P A     +T L  
Sbjct: 126 VN------EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMR 179

Query: 262 AQKLGYISVIETL 274
           A +      ++ +
Sbjct: 180 AMEFRNREALDLM 192

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  126 bits (318), Expect = 9e-34
 Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 8/132 (6%)

Query: 141 LLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFG 200
           +      N      + +  +H AAR G  + +  LIE G +   + + G T LH+A  FG
Sbjct: 5   MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG 64

Query: 201 QLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALN 260
            ++  +YL   G   +     G  P+H A    +  ++  L+            GQ   +
Sbjct: 65  CVDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAK------ERGQMPES 116

Query: 261 IAQKLGYISVIE 272
           +  +     V E
Sbjct: 117 LLNECDEREVNE 128

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  237 bits (606), Expect = 3e-76
 Identities = 60/300 (20%), Positives = 111/300 (37%), Gaps = 27/300 (9%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLE---NDTKGKVK 57
                 +D +  +  +     T    +    L      G   +   +     N    +  
Sbjct: 67  QGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIIDPRHN 125

Query: 58  LPALHIAAKKDDCKAAALLLENDHS--------PDVKSNSHFTPLHIAAHYGNTNIAELL 109
              LH  A     + +  L+ ++           +       TPL +A       +   L
Sbjct: 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL 185

Query: 110 IQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK---GANIEAKTRDGLTPLHCAARS 166
           ++  A+     K   + LH A       M+  +++      +IE   R+G+T L   A +
Sbjct: 186 MKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN 245

Query: 167 GHDNVIDI---LIEKGA--------ALYSKTKAGFTPLHIASHFGQLNMVRYLV-ENGAN 214
              + +     L+EKGA           S+   G T LH A+    + +V+YLV E G+N
Sbjct: 246 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN 305

Query: 215 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
            +     G TP+  A+Q+GR+ ++  L+  GA   A      TA  +AQ   + ++++  
Sbjct: 306 KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  202 bits (515), Expect = 1e-62
 Identities = 53/281 (18%), Positives = 97/281 (34%), Gaps = 29/281 (10%)

Query: 16  SKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAAL 75
            K      +       L  A   G+ +     L++ +                +      
Sbjct: 25  EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSL-----YPNPQGYGNGNDFLGDF 79

Query: 76  LLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGK 135
              N   P          LH  A  G+  I E + ++  N+    +HN T LH       
Sbjct: 80  NHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNI-IDPRHNRTVLHWIASNSS 137

Query: 136 VAMVELLI--------SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK 187
               E LI        + GA++ A   D  TPL  A  +    ++  L++ GA      K
Sbjct: 138 AEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNK 197

Query: 188 AGFTPLHIASHFGQLNMVRYLVEN---GANVNATTNLGYTPLHQASQQG---RVLIIDLL 241
           +  + LH A+      M+ Y++ +     ++      G T L   +      +V    LL
Sbjct: 198 SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLL 257

Query: 242 LGAGAQPN--------ATTNHGQTALNIAQKLGYISVIETL 274
           +  GA+ +        +    G+TAL+ A ++  + +++ L
Sbjct: 258 VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYL 298

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  181 bits (462), Expect = 1e-54
 Identities = 42/229 (18%), Positives = 70/229 (30%), Gaps = 22/229 (9%)

Query: 59  PALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
            +L  A+     K                +    P       GN  + +           
Sbjct: 39  HSLLEASYDGYIKRQRNE---------LQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTE 89

Query: 119 QAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI-- 176
               +   LH     G  A+ E +  +  NI    R   T LH  A +      + LI  
Sbjct: 90  PEPESPIKLHTEAA-GSYAITEPITRESVNI-IDPRHNRTVLHWIASNSSAEKSEDLIVH 147

Query: 177 ------EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQAS 230
                   GA + +      TPL +A    +  +V YL++ GA+         + LHQA+
Sbjct: 148 EAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAA 207

Query: 231 QQGRVLIIDLLL---GAGAQPNATTNHGQTALNIAQKLGYISVIETLKI 276
                 ++  +L              +G TAL I         + + K+
Sbjct: 208 ANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKL 256

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  179 bits (457), Expect = 5e-54
 Identities = 55/242 (22%), Positives = 93/242 (38%), Gaps = 27/242 (11%)

Query: 1   MAAQENHDGVV--------RYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN-- 50
             A  +             +  ++ G +      D  TPL +A+     R+VA L++   
Sbjct: 131 WIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA 190

Query: 51  --DTKGKVKLPALHIAAKKDDCKAAALLLENDHS---PDVKSNSHFTPLHIAAHYGNTN- 104
                 K +  ALH AA   D      +L +       +    +  T L I AH    + 
Sbjct: 191 DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQ 250

Query: 105 --IAELLIQKHANVNNQAKHNI--------TPLHVACKWGKVAMVELLIS-KGANIEAKT 153
              A+LL++K A V+               T LH A +   + +V+ L+  KG+N + + 
Sbjct: 251 VASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQD 310

Query: 154 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA 213
            DG TP+  AA+ G   V+  LI++GA++ +      T   +A      N+V        
Sbjct: 311 EDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370

Query: 214 NV 215
             
Sbjct: 371 ER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  110 bits (277), Expect = 6e-28
 Identities = 36/169 (21%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 1   MAAQENHDGVVRYLLSK---GGNQTLATEDGFTPLAVAMQQGHDRVVAV---LLEN---- 50
            AA     G++ Y+L+     G+      +G T L +         VA    L+E     
Sbjct: 205 QAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV 264

Query: 51  --------DTKGKVKLPALHIAAKKDDCKAAALLL-ENDHSPDVKSNSHFTPLHIAAHYG 101
                   D++      ALH AA+  +      L+ E   + D +     TP+ +AA  G
Sbjct: 265 DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG 324

Query: 102 NTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
              +   LIQ+ A+V      + T   +A       +V++        E
Sbjct: 325 RIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  229 bits (586), Expect = 2e-74
 Identities = 60/272 (22%), Positives = 95/272 (34%), Gaps = 22/272 (8%)

Query: 25  TEDGFTPLAVAMQQGHDRVVAVLLEN-------DTKGKVKLPALHIAAKKDDCKAAALLL 77
           TEDG T L +A+   H+  +  LL         D +  +   ALH+AA   +      L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 78  ENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA-------------KHNI 124
                  V      T LH+A        A +L+Q   +    A               + 
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125

Query: 125 TPLHVACKW-GKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 183
            P  V  +   +             +EA+  DG TPLH A       ++ +L + GA L 
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN 185

Query: 184 SKTK-AGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 242
                 G TPLH+A      +++  L++ GA+  A    G TPL  A  +   ++  LL 
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLR 245

Query: 243 GAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
             GA          +  + +         +  
Sbjct: 246 AHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEG 277

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  211 bits (539), Expect = 2e-67
 Identities = 50/244 (20%), Positives = 79/244 (32%), Gaps = 18/244 (7%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           +AA       V  L + G    +A   G T L +A +        VLL+           
Sbjct: 51  LAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD 110

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTN-IAELLIQKHANVNNQ 119
            ++                  S D   ++   P  + +     N            +  +
Sbjct: 111 TYLT----------------QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE 154

Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRD-GLTPLHCAARSGHDNVIDILIEK 178
                TPLHVA       MV LL   GA++       G TPLH A  +   +V+++L++ 
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214

Query: 179 GAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII 238
           GA   ++   G TPL  A       + R L  +GA          +P   +         
Sbjct: 215 GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNR 274

Query: 239 DLLL 242
           D   
Sbjct: 275 DEGD 278

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  179 bits (456), Expect = 7e-55
 Identities = 46/207 (22%), Positives = 76/207 (36%), Gaps = 18/207 (8%)

Query: 86  KSNSHFTPLHIAAHYGNTNIAELLIQKHAN---VNNQAKHNITPLHVACKWGKVAMVELL 142
            +    T LH+A  + +    + L+   A    ++ Q     T LH+A   G+ + VE L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 143 ISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTP---------- 192
            + GA +    R G T LH A R        +L++   +        +            
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124

Query: 193 ----LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248
                  +    +        +    + A    G+TPLH A       ++ LL  AGA  
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL 184

Query: 249 NATT-NHGQTALNIAQKLGYISVIETL 274
           N      G+T L++A +    SV+E L
Sbjct: 185 NKPEPTCGRTPLHLAVEAQAASVLELL 211

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  119 bits (300), Expect = 6e-32
 Identities = 29/114 (25%), Positives = 41/114 (35%), Gaps = 3/114 (2%)

Query: 149 IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS---KTKAGFTPLHIASHFGQLNMV 205
               T DG T LH A    H+  +D L+   A       +   G T LH+A+  G+ + V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 206 RYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTAL 259
             L   GA V      G+T LH A +        +LL          +      
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  227 bits (582), Expect = 2e-73
 Identities = 67/279 (24%), Positives = 109/279 (39%), Gaps = 11/279 (3%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
           +      +  +   + K     +  +DG   LA A   G    V  LLE     +     
Sbjct: 14  LKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLA-ACSSGDTEEVLRLLERGADINYANVD 72

Query: 57  KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
            L ALH A   D+      L+EN  + +   N  + PLH AA  G  +IAE LI + A+V
Sbjct: 73  GLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV 132

Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
                   TPL +A +     +++  +++         D         R    +    L 
Sbjct: 133 GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV------DIEAARKEEERIMLRDARQWLN 186

Query: 177 EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
                     K+G T LH+A+  G   +++ L++   +VN     G+TPLH A+  G+  
Sbjct: 187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE 246

Query: 237 IIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLK 275
              +L+       A    GQTA ++A +     + E  K
Sbjct: 247 ACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQK 285

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  221 bits (566), Expect = 3e-71
 Identities = 58/258 (22%), Positives = 92/258 (35%), Gaps = 12/258 (4%)

Query: 2   AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVK 57
           A        V  LL +G +   A  DG T L  A    +  +V  L+EN    +      
Sbjct: 47  ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106

Query: 58  LPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKH-ANV 116
              LH AA       A  L+         ++   TPL IA       + +  + +   ++
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI 166

Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
                          +       + L S   N     + G T LH AA  G+  V+ +LI
Sbjct: 167 E-------AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219

Query: 177 EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
           +    +  K   G+TPLH A+H+G+    R LVEN  ++ A   +G T    A +     
Sbjct: 220 QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGY 279

Query: 237 IIDLLLGAGAQPNATTNH 254
           + +L        +     
Sbjct: 280 LEELQKKQNLLHSEKREK 297

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  211 bits (539), Expect = 4e-67
 Identities = 54/251 (21%), Positives = 87/251 (34%), Gaps = 9/251 (3%)

Query: 27  DGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLP---ALHIAAKKDDCKAAALLLENDHSP 83
                  +    G +  +   +    K KVK         A    D +    LLE     
Sbjct: 7   KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADI 66

Query: 84  DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI 143
           +  +    T LH A    N ++ + L++  AN+N        PLH A   G + + E LI
Sbjct: 67  NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLI 126

Query: 144 SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLN 203
           S+GA++ A   +G TPL  A     + ++   + +                        +
Sbjct: 127 SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV------DIEAARKEEERIMLRD 180

Query: 204 MVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQ 263
             ++L     N       G T LH A+ +G   ++ LL+ A    N     G T L+ A 
Sbjct: 181 ARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAA 240

Query: 264 KLGYISVIETL 274
             G       L
Sbjct: 241 HWGKEEACRIL 251

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  160 bits (407), Expect = 2e-47
 Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 1/159 (0%)

Query: 116 VNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
           +            +    G    +E  + K    + K  DG      A  SG    +  L
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRL 59

Query: 176 IEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV 235
           +E+GA +      G T LH A     ++MV++LVENGAN+N   N G+ PLH A+  G +
Sbjct: 60  LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYL 119

Query: 236 LIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
            I + L+  GA   A  + G T L+IA++     +++  
Sbjct: 120 DIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  223 bits (570), Expect = 1e-72
 Identities = 52/216 (24%), Positives = 95/216 (43%), Gaps = 1/216 (0%)

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
            LH AA+        +L++   + D  S    TPL  AA   +    + LI+  A V+ +
Sbjct: 14  PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK 73

Query: 120 AKHNITPLHVACKWGKVAMVELLISKGA-NIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178
                T LH+A K G   +V+ L+S G  ++  +   G TP+  A    H +++ +L+ K
Sbjct: 74  DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133

Query: 179 GAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII 238
           G+ +  +       LH A+  G +++   L+    +++A    G +PLH A+++ R   +
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCV 193

Query: 239 DLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
            L L   +        G+T L  A     +     +
Sbjct: 194 VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  221 bits (565), Expect = 9e-72
 Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 5/227 (2%)

Query: 25  TEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEND 80
            ++  +PL  A + GH  +  +L++     DT  + +   L  AA+ +  +A   L++  
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67

Query: 81  HSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHA-NVNNQAKHNITPLHVACKWGKVAMV 139
              D K     T LH+AA  G+  + + L+     +VN Q     TP+  A ++  V +V
Sbjct: 68  ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLV 127

Query: 140 ELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHF 199
           +LL+SKG++I  +  +    LH AA SG  ++ +IL+     L++    G +PLHIA+  
Sbjct: 128 KLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARE 187

Query: 200 GQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 246
            + + V   +   ++V      G TPL  AS   +V     +  A  
Sbjct: 188 NRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  214 bits (547), Expect = 4e-69
 Identities = 56/192 (29%), Positives = 99/192 (51%), Gaps = 1/192 (0%)

Query: 84  DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI 143
            ++  +  +PLH AA  G+ +I  +L+Q  AN++  ++   TPL  A +   +  V+ LI
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI 64

Query: 144 SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSKTKAGFTPLHIASHFGQL 202
             GA ++ K  +G T LH AA+ GH  V+  L+  G   +  +   G+TP+  A+ +  +
Sbjct: 65  KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124

Query: 203 NMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
           ++V+ L+  G+++N   N     LH A+  G V I ++LL A    +A   HG + L+IA
Sbjct: 125 DLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIA 184

Query: 263 QKLGYISVIETL 274
            +      +   
Sbjct: 185 ARENRYDCVVLF 196

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  203 bits (520), Expect = 5e-65
 Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 5/219 (2%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
            AA+  H  +   L+  G N    +ED  TPL  A +  H   V  L++     D K   
Sbjct: 17  AAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAE 76

Query: 57  KLPALHIAAKKDDCKAAALLLEN-DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHAN 115
               LH+AAKK   +    LL N     + + +  +TP+  A  Y + ++ +LL+ K ++
Sbjct: 77  GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136

Query: 116 VNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
           +N +       LH A   G V + E+L++   ++ A    G +PLH AAR    + + + 
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLF 196

Query: 176 IEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
           + + + +  K K G TPL  AS   Q+     + +   +
Sbjct: 197 LSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  179 bits (457), Expect = 1e-55
 Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 1/163 (0%)

Query: 113 HANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVI 172
           H N   + ++  +PLH A + G V +  +L+  GANI+  + D  TPL  AA + H   +
Sbjct: 1   HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60

Query: 173 DILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA-NVNATTNLGYTPLHQASQ 231
             LI+ GA +  K   G T LH+A+  G   +V+YL+ NG  +VN   + G+TP+  A++
Sbjct: 61  KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE 120

Query: 232 QGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
              V ++ LLL  G+  N   N     L+ A   G + + E L
Sbjct: 121 YKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  222 bits (569), Expect = 2e-72
 Identities = 65/224 (29%), Positives = 109/224 (48%), Gaps = 9/224 (4%)

Query: 60  ALHIAAKKDDCKAAALLLENDHS----PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHAN 115
            LHIA  + +  A   L+          D+ +N   TPLH+A      ++  LL+   A+
Sbjct: 12  PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS 71

Query: 116 VNNQAKHNITPLHVACKWGKVAMVELLISKGA----NIEAKTRDGLTPLHCAARSGHDNV 171
                +H  T  H+AC+      +  L+   A    ++EA+  DGLT LH A  +     
Sbjct: 72  PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQET 131

Query: 172 IDILIEKGAALYSK-TKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQAS 230
           + +L+E+GA + +   K+G +PL  A     L+MV+ L+++GANVNA    G + LH AS
Sbjct: 132 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS 191

Query: 231 QQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
            +G + ++  L+ +GA  +    H  T L +A+    I ++   
Sbjct: 192 GRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  216 bits (553), Expect = 6e-70
 Identities = 63/236 (26%), Positives = 105/236 (44%), Gaps = 13/236 (5%)

Query: 24  ATEDGFTPLAVAMQQGHDRVVAVLLEN--------DTKGKVKLPALHIAAKKDDCKAAAL 75
           A EDG TPL +A+ QG+   V  L+          D    ++   LH+A          L
Sbjct: 5   ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL 64

Query: 76  LLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHA----NVNNQAKHNITPLHVAC 131
           L+    SP        T  H+A  + +      L+   A    ++  +    +T LHVA 
Sbjct: 65  LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124

Query: 132 KWGKVAMVELLISKGANIEAK-TRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGF 190
                  V+LL+ +GA+I+A   + G +PL  A  +   +++ +L++ GA + ++  +G 
Sbjct: 125 NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGS 184

Query: 191 TPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 246
           + LH AS  G L +VR LV +GA+ +       TPL  A  +  + I+       A
Sbjct: 185 SALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  162 bits (412), Expect = 9e-49
 Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 9/168 (5%)

Query: 116 VNNQAKHNITPLHVACKWGKVAMVELLIS----KGANIEAKTRDGLTPLHCAARSGHDNV 171
                +   TPLH+A   G +  V  L++     G  ++       TPLH A  +   +V
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 172 IDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA----NVNATTNLGYTPLH 227
           + +L+  GA+  +  + G T  H+A        +R L+++ A    ++ A    G T LH
Sbjct: 62  VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121

Query: 228 QASQQGRVLIIDLLLGAGAQPNAT-TNHGQTALNIAQKLGYISVIETL 274
            A        + LLL  GA  +A     G++ L  A +   +S+++ L
Sbjct: 122 VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 47.4 bits (114), Expect = 2e-06
 Identities = 11/50 (22%), Positives = 19/50 (38%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN 50
            A+      +VR L+  G + +L      TPL VA  +    ++      
Sbjct: 189 SASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  221 bits (567), Expect = 5e-72
 Identities = 56/232 (24%), Positives = 96/232 (41%), Gaps = 7/232 (3%)

Query: 26  EDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLENDH 81
           +     +  A Q G       L+E         K  +  LH AA  +        +    
Sbjct: 7   DYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA 66

Query: 82  SPDVKSNSH-FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVE 140
             D        TPLH A   G+ ++   L++  A+ +       + +H+A ++G  ++V 
Sbjct: 67  IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVA 126

Query: 141 LLISKGANIEAKTRDGLTPLHCAARSGHD-NVIDILIEKGAALYSKTKA-GFTPLHIASH 198
            LI+KG +++   ++G+TPL  AA   H  +   +L+    ++    K    T LH A  
Sbjct: 127 YLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVL 186

Query: 199 FGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 250
            G   ++  L+E GANV+A    G + L  A Q+  V +I+ L  A      
Sbjct: 187 AGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  221 bits (566), Expect = 6e-72
 Identities = 62/218 (28%), Positives = 102/218 (46%), Gaps = 3/218 (1%)

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
            +  A +    +    L+E  +        + T LH AA     ++ +  I K A V+  
Sbjct: 12  DIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL 71

Query: 120 AK-HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178
               N TPLH A + G ++MV  L+  GA+      +G + +H AA+ GH +++  LI K
Sbjct: 72  GGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131

Query: 179 GAALYSKTKAGFTPLHIASHFG-QLNMVRYLVENGANVNATTNL-GYTPLHQASQQGRVL 236
           G  +    + G TPL  A++    ++  R L+    +VN        T LH A   G   
Sbjct: 132 GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTT 191

Query: 237 IIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           +I LLL AGA  +A    G++AL++A++   + +I  L
Sbjct: 192 VISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  206 bits (526), Expect = 6e-66
 Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 3/194 (1%)

Query: 84  DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI 143
               +     +  A  YG       L++   +V    K N+T LH A    ++ +V+  I
Sbjct: 3   THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYI 62

Query: 144 SKGANIEAKTRD-GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQL 202
           SKGA ++    D   TPLH A R GH +++  L++ GA        G + +H+A+ FG  
Sbjct: 63  SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHT 122

Query: 203 NMVRYLVENGANVNATTNLGYTPLHQASQQGRVL-IIDLLLGAGAQPNATTN-HGQTALN 260
           ++V YL+  G +V+     G TPL  A+ +   +    LLL      N     H  TAL+
Sbjct: 123 SIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALH 182

Query: 261 IAQKLGYISVIETL 274
            A   G  +VI  L
Sbjct: 183 WAVLAGNTTVISLL 196

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  179 bits (457), Expect = 2e-55
 Identities = 53/220 (24%), Positives = 90/220 (40%), Gaps = 32/220 (14%)

Query: 1   MAAQENHDGVVRYLLSKGGNQ-TLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLP 59
            AA  N   +V+Y +SKG     L  +   TPL  A +QGH  +V  L++          
Sbjct: 48  WAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD------ 101

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
                                  P +      + +H+AA +G+T+I   LI K  +V+  
Sbjct: 102 -----------------------PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM 138

Query: 120 AKHNITPLHVACKWG-KVAMVELLISKGANIEAKTR-DGLTPLHCAARSGHDNVIDILIE 177
            ++ +TPL  A      V    LL++   ++    +    T LH A  +G+  VI +L+E
Sbjct: 139 DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE 198

Query: 178 KGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNA 217
            GA + ++   G + L +A     + M+ +L E       
Sbjct: 199 AGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  174 bits (445), Expect = 9e-54
 Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 1/149 (0%)

Query: 115 NVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDI 174
           ++ +   ++   +  A ++G       L+  G ++    ++ +T LH AA +   +++  
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60

Query: 175 LIEKGAALYSKTK-AGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 233
            I KGA +         TPLH A+  G L+MV  L++ GA+ +     G + +H A+Q G
Sbjct: 61  YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFG 120

Query: 234 RVLIIDLLLGAGAQPNATTNHGQTALNIA 262
              I+  L+  G   +    +G T L  A
Sbjct: 121 HTSIVAYLIAKGQDVDMMDQNGMTPLMWA 149

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  134 bits (340), Expect = 4e-38
 Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 6/157 (3%)

Query: 2   AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVK 57
           A ++ H  +V  L+  G + +L   +G + + +A Q GH  +VA L+      D   +  
Sbjct: 83  ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG 142

Query: 58  LPALHIAAKKDDCKAAA-LLLENDHSPDVKSNSH-FTPLHIAAHYGNTNIAELLIQKHAN 115
           +  L  AA +        LLL  + S ++    H  T LH A   GNT +  LL++  AN
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN 202

Query: 116 VNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK 152
           V+ Q     + L +A +   V M+  L          
Sbjct: 203 VDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  223 bits (570), Expect = 6e-72
 Identities = 72/270 (26%), Positives = 114/270 (42%), Gaps = 21/270 (7%)

Query: 2   AAQENHDGVVRYLLSKGGNQTLATED-GFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
           A Q     +V+ LL  G N     E+ G+TPL  A+Q   + +V +LL +      + K 
Sbjct: 12  AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 71

Query: 57  KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
                 +AA     K   L L      +      FT    AA YG     + L ++ ANV
Sbjct: 72  GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131

Query: 117 NNQAKHNI----------TPLHVACKWGKVAMVELLISK-GANIEAKTRDGLTPLHCAAR 165
           N + K             T L  A + G V ++++L+ + GA++ A    G   L  A  
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL 191

Query: 166 SGHDN----VIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN-GANVNATTN 220
           S  D+    +  +L++ GA +  + + G TPL +A     L +V+ L+E     +N T +
Sbjct: 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS 251

Query: 221 LGYTPLHQASQQGRVLIIDLLLGAGAQPNA 250
            G T L  A +     I +LL   GA  + 
Sbjct: 252 DGKTALLLAVELKLKKIAELLCKRGASTDC 281

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  220 bits (564), Expect = 5e-71
 Identities = 73/272 (26%), Positives = 118/272 (43%), Gaps = 21/272 (7%)

Query: 24  ATEDGFTPLAVAMQQGHDRVVAVLLE-----NDTKGKVKLPALHIAAKKDDCKAAALLLE 78
           A  +    L  A+Q     +V  LLE     N  + +     LH A +        LLL 
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 79  NDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAM 138
           +   P ++  +  TP  +AA  G+  + +L + K A+VN    +  T    A  +GKV  
Sbjct: 61  HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120

Query: 139 VELLISKGANIEAK----------TRDGLTPLHCAARSGHDNVIDILI-EKGAALYSKTK 187
           ++ L  +GAN+  +           + G T L  AA  GH  V+ IL+ E GA + +   
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180

Query: 188 AGFTPLHIASHFGQLN----MVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
            G   L  A      +    +   L+++GA+VN     G TPL  A ++  + ++  LL 
Sbjct: 181 MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240

Query: 244 -AGAQPNATTNHGQTALNIAQKLGYISVIETL 274
               + N T + G+TAL +A +L    + E L
Sbjct: 241 QEHIEINDTDSDGKTALLLAVELKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  191 bits (489), Expect = 1e-59
 Identities = 50/237 (21%), Positives = 86/237 (36%), Gaps = 20/237 (8%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
            A Q + + +V  LL  G +  L  ++G TP  +A   G  +++ + L      +     
Sbjct: 45  NAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFY 104

Query: 57  KLPALHIAAKKDDCKAAALLLE----------NDHSPDVKSNSHFTPLHIAAHYGNTNIA 106
              A   AA     KA   L +               +       T L  AA  G+  + 
Sbjct: 105 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL 164

Query: 107 ELLIQKH-ANVNNQAKHNITPLHVACKWGKV----AMVELLISKGANIEAKTRDGLTPLH 161
           ++L+ +  A+VN         L  A          A+  LL+  GA++  +   G TPL 
Sbjct: 165 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224

Query: 162 CAARSGHDNVIDILIEK-GAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNA 217
            A    H  ++  L+E+    +      G T L +A       +   L + GA+ + 
Sbjct: 225 LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  121 bits (307), Expect = 8e-33
 Identities = 38/171 (22%), Positives = 70/171 (40%), Gaps = 20/171 (11%)

Query: 2   AAQENHDGVVRYLLSKGGN----------QTLATEDGFTPLAVAMQQGHDRVVAVLLEN- 50
           AA       +++L  +G N          Q    + G T L  A ++GH  V+ +LL+  
Sbjct: 112 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 171

Query: 51  ----DTKGKVKLPALHIAAK---KDDCKAAA-LLLENDHSPDVKSNSHFTPLHIAAHYGN 102
               +    +   AL  A       D +A   LLL++    +V+     TPL +A    +
Sbjct: 172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 231

Query: 103 TNIAELLIQKH-ANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK 152
             + + L+++    +N+      T L +A +     + ELL  +GA+ +  
Sbjct: 232 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  218 bits (559), Expect = 3e-70
 Identities = 40/217 (18%), Positives = 74/217 (34%), Gaps = 7/217 (3%)

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
            L         K     L +            +  + A    N  +   L+   A  N  
Sbjct: 3   DLSRINTWKS-KQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN-- 58

Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 179
              N  PLH A       +V++L+  G +       G T L+ A  SG+   + + ++K 
Sbjct: 59  LLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN 118

Query: 180 AALYSKTKAGF-TPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII 238
             L    K G+ T  + A     +++V Y +    +         + +H   + G V ++
Sbjct: 119 WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAI-LLSCIHITIKNGHVDMM 177

Query: 239 DLLLGAGAQPNATTNHGQT-ALNIAQKLGYISVIETL 274
            LLL      N   +      + +A     I +++ L
Sbjct: 178 ILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQAL 214

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  214 bits (548), Expect = 1e-68
 Identities = 44/277 (15%), Positives = 95/277 (34%), Gaps = 13/277 (4%)

Query: 2   AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN--DTKGKVKLP 59
                    ++  L    +   A   G +    A+   + R+V  LL             
Sbjct: 6   RINTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEF 64

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
            LH AA  +D K   +LL +        +   T L+ A   GN    +L ++K+  +   
Sbjct: 65  PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY 124

Query: 120 AKHNI-TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178
            K    T  + A     V++V   +S+  +        L+ +H   ++GH +++ +L++ 
Sbjct: 125 GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-DLAILLSCIHITIKNGHVDMMILLLDY 183

Query: 179 GAALYSKTKAGFTP-LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLI 237
             +  +     F P + +A     + M++ L +   N+        +   +        I
Sbjct: 184 MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEI 236

Query: 238 IDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
             +++    +  + +      +    KL  I      
Sbjct: 237 AKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKE 273

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  197 bits (504), Expect = 5e-62
 Identities = 32/247 (12%), Positives = 83/247 (33%), Gaps = 16/247 (6%)

Query: 2   AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVK 57
           A  +N+  +V  LL+ G  +     +   PL  A      ++V +LL +           
Sbjct: 38  AIADNNVRLVCTLLNAGALKN--LLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKG 95

Query: 58  LPALHIAAKKDDCKAAALLLENDHSPDVKSNSHF-TPLHIAAHYGNTNIAELLIQKHANV 116
             AL+ A    + +   L ++ +        + + T  + A    + +I    + +  + 
Sbjct: 96  NTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS- 154

Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTP-LHCAARSGHDNVIDIL 175
                  ++ +H+  K G V M+ LL+    +          P +  A  +    ++  L
Sbjct: 155 TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQAL 214

Query: 176 IEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV 235
            +    +Y       +            + + ++E      + +      + + ++   +
Sbjct: 215 FKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEI 267

Query: 236 LIIDLLL 242
           +  +  L
Sbjct: 268 ISKNKEL 274

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  135 bits (342), Expect = 5e-38
 Identities = 23/182 (12%), Positives = 57/182 (31%), Gaps = 12/182 (6%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGF-TPLAVAMQQGHDRVVAVLLE---NDTKGKV 56
            A    +   V+  + K        + G+ T    A+      +V+  L    +     +
Sbjct: 101 YAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAI 160

Query: 57  KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTP-LHIAAHYGNTNIAELLIQKHAN 115
            L  +HI  K        LLL+   S +  ++  F P + +A    +  + + L +   N
Sbjct: 161 LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN 220

Query: 116 VNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
           +        +            + +++I K    ++ +      +    +       +  
Sbjct: 221 IY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKE 273

Query: 176 IE 177
           + 
Sbjct: 274 LR 275

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  102 bits (257), Expect = 1e-25
 Identities = 23/159 (14%), Positives = 55/159 (34%), Gaps = 17/159 (10%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN-------DTK 53
            A   N   +V Y LS+  + T       + + + ++ GH  ++ +LL+        ++ 
Sbjct: 135 HAVMLNDVSIVSYFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSL 193

Query: 54  GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKH 113
             +  P + +A    D +    L + D +         +         +  IA+++I+KH
Sbjct: 194 LFI--PDIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIEKH 244

Query: 114 ANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK 152
               + +      +    K  ++      +        K
Sbjct: 245 VEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYVNCVK 283

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  216 bits (553), Expect = 9e-70
 Identities = 61/239 (25%), Positives = 106/239 (44%), Gaps = 15/239 (6%)

Query: 51  DTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDV--------------KSNSHFTPLHI 96
           + +G      L IA+            E + +P V                 +  T LH+
Sbjct: 4   NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHL 63

Query: 97  AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGA-NIEAKTRD 155
           AA Y  ++ A+ L++  A+ N Q     TPLH A       + ++LI   A +++A+  D
Sbjct: 64  AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 123

Query: 156 GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANV 215
           G TPL  AAR   + +++ LI   A + +    G + LH A+    ++    L++NGAN 
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 183

Query: 216 NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           +   N   TPL  A+++G      +LL   A  + T +  +   +IAQ+  +  ++  L
Sbjct: 184 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  207 bits (529), Expect = 4e-66
 Identities = 58/244 (23%), Positives = 104/244 (42%), Gaps = 19/244 (7%)

Query: 25  TEDGFTPL-------------AVAMQQGHDRVVAVLLEN-----DTKGKVKLPALHIAAK 66
             DGFTPL                 ++    V++  +       +   +    ALH+AA+
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66

Query: 67  KDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHA-NVNNQAKHNIT 125
                AA  LLE     +++ N   TPLH A       + ++LI+  A +++ +     T
Sbjct: 67  YSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 126

Query: 126 PLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSK 185
           PL +A +     M+E LI+  A++ A    G + LH AA   + +   +L++ GA    +
Sbjct: 127 PLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ 186

Query: 186 TKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 245
                TPL +A+  G     + L+++ AN + T ++   P   A ++    I+ LL    
Sbjct: 187 NNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH 246

Query: 246 AQPN 249
              +
Sbjct: 247 HHHH 250

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  198 bits (505), Expect = 1e-62
 Identities = 53/221 (23%), Positives = 84/221 (38%), Gaps = 6/221 (2%)

Query: 2   AAQENHDGVVRYLLSKGGNQTLAT-EDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
             +E+   V+   + +G +    T   G T L +A +         LLE     + +  +
Sbjct: 30  EEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNM 89

Query: 57  KLPALHIAAKKDDCKAAALLLENDHS-PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHAN 115
               LH A   D      +L+ N  +  D + +   TPL +AA      + E LI  HA+
Sbjct: 90  GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD 149

Query: 116 VNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
           VN       + LH A     V    +L+  GAN + +     TPL  AAR G      +L
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 209

Query: 176 IEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
           ++  A           P  IA      ++VR L     + +
Sbjct: 210 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  196 bits (500), Expect = 7e-62
 Identities = 57/207 (27%), Positives = 92/207 (44%), Gaps = 15/207 (7%)

Query: 83  PDVKSNSHFTPLHIAAHYGNTN-------------IAELLIQKHANVNNQA-KHNITPLH 128
            +V+    FTPL IA+  G                +    I + A+++NQ  +   T LH
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62

Query: 129 VACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSKTK 187
           +A ++ +    + L+   A+   +   G TPLH A  +    V  ILI   A  L ++  
Sbjct: 63  LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 122

Query: 188 AGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ 247
            G TPL +A+      M+  L+ + A+VNA  +LG + LH A+    V    +LL  GA 
Sbjct: 123 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 182

Query: 248 PNATTNHGQTALNIAQKLGYISVIETL 274
            +   N  +T L +A + G     + L
Sbjct: 183 KDMQNNREETPLFLAAREGSYETAKVL 209

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  122 bits (308), Expect = 2e-33
 Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 15/142 (10%)

Query: 148 NIEAKTRDGLTPLHCAARSG-------------HDNVIDILIEKGAALY-SKTKAGFTPL 193
           ++  +  DG TPL  A+ SG                VI   I +GA+L+    + G T L
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 194 HIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ-PNATT 252
           H+A+ + + +  + L+E  A+ N   N+G TPLH A       +  +L+   A   +A  
Sbjct: 62  HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121

Query: 253 NHGQTALNIAQKLGYISVIETL 274
           + G T L +A +L    ++E L
Sbjct: 122 HDGTTPLILAARLAVEGMLEDL 143

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 99.5 bits (249), Expect = 9e-25
 Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 4/122 (3%)

Query: 2   AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVK 57
           AA+   +G++  L++   +     + G + L  A    +     VLL+N    D +   +
Sbjct: 131 AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 190

Query: 58  LPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN 117
              L +AA++   + A +LL++  + D+  +    P  IA    + +I  LL  +H + +
Sbjct: 191 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250

Query: 118 NQ 119
           + 
Sbjct: 251 HH 252

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 43.6 bits (104), Expect = 3e-05
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN 50
           +AA+E      + LL    N+ +       P  +A ++ H  +V +L   
Sbjct: 196 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLE 245

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  213 bits (545), Expect = 6e-69
 Identities = 61/211 (28%), Positives = 89/211 (42%), Gaps = 8/211 (3%)

Query: 60  ALHIAAKKDDCKAAA-LLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
            LH A  +++      LL         K      PLH +  +    I   L+ K  NVN 
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64

Query: 119 QAKHN---ITPLHVACKWGKVAMVELLISK--GANIEAKTRDGLTPLHCAARSGHDNVID 173
               +    TP H+AC  G + +V+ L  +    ++   T  G+T LH A       V  
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124

Query: 174 ILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN-VNATTNLGYTPLHQASQQ 232
            LIE GA++  K K    PLH A+  G L ++  L   G + VN     G+TPL  A  +
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184

Query: 233 GRVLIIDLLLGA-GAQPNATTNHGQTALNIA 262
           G      LL+   GA+ +   N G  A ++A
Sbjct: 185 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  199 bits (509), Expect = 2e-63
 Identities = 56/227 (24%), Positives = 88/227 (38%), Gaps = 15/227 (6%)

Query: 28  GFTPLAVAMQQGHDRVVAVLLEN-----DTKGKVKLPALHIAAKKDDCKAAALLLEND-- 80
              PL  A  +     V  LL +       K +     LH +      +  + LL     
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 81  -HSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKH--ANVNNQAKHNITPLHVACKWGKVA 137
            +  D   +S +TP HIA   GN  + + L  +    ++N      +T LH+A       
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121

Query: 138 MVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSKTKAGFTPLHIA 196
           + + LI  GA++  K +    PLH AA  G   +I++L   G + +  + K G+TPL  A
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181

Query: 197 SHFGQLNMVRYLVEN-GANVNATTNLGYTPLHQASQQGRVLIIDLLL 242
              G  +    LVE  GA  +   N G      A  +    +    L
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ---VKKFFL 225

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  195 bits (499), Expect = 5e-62
 Identities = 53/191 (27%), Positives = 81/191 (42%), Gaps = 7/191 (3%)

Query: 91  FTPLHIAAHYGNTN-IAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANI 149
             PLH A        + ELL  K + +  + +    PLH +  +    +   L+SK  N+
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62

Query: 150 ---EAKTRDGLTPLHCAARSGHDNVIDILIEK--GAALYSKTKAGFTPLHIASHFGQLNM 204
              +     G TP H A   G+  V+  L ++     L   T  G T LH+A       +
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122

Query: 205 VRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG-AQPNATTNHGQTALNIAQ 263
            ++L+ENGA+V         PLH+A+  G + +I+LL G G +  N     G T L  A 
Sbjct: 123 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182

Query: 264 KLGYISVIETL 274
             G+      L
Sbjct: 183 AEGHGDAAVLL 193

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 92.9 bits (232), Expect = 1e-22
 Identities = 30/179 (16%), Positives = 46/179 (25%), Gaps = 67/179 (37%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           +A  +    V ++L+  G +  +  +    P                             
Sbjct: 113 LAVGKKWFEVSQFLIENGASVRIKDKFNQIP----------------------------- 143

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHAN-VNNQ 119
           LH AA                                   G+  + ELL     + VN Q
Sbjct: 144 LHRAA---------------------------------SVGSLKLIELLCGLGKSAVNWQ 170

Query: 120 AKHNITPLHVACKWGKVAMVELLISK-GANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
            K   TPL  A   G      LL+ K GA  +     G      A    ++ V    + 
Sbjct: 171 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLN 226

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 51.3 bits (124), Expect = 6e-08
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 221 LGYTPLHQASQQGRVLII-DLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           +   PLHQA  +     + +LL    +        G+  L+ +       +   L
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFL 55

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  213 bits (544), Expect = 7e-69
 Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 1/193 (0%)

Query: 83  PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELL 142
            +    +  T LH+AA Y  ++ A+ L++  A+ N Q     TPLH A       + ++L
Sbjct: 18  HNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQIL 77

Query: 143 ISKGA-NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQ 201
           I   A +++A+  DG TPL  AAR   + +++ LI   A + +    G + LH A+    
Sbjct: 78  IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 137

Query: 202 LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNI 261
           ++    L++NGAN +   N   TPL  A+++G      +LL   A  + T +  +   +I
Sbjct: 138 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 197

Query: 262 AQKLGYISVIETL 274
           AQ+  +  ++  L
Sbjct: 198 AQERMHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  211 bits (539), Expect = 4e-68
 Identities = 57/252 (22%), Positives = 101/252 (40%), Gaps = 32/252 (12%)

Query: 6   NHDGVVRYLLSKGGNQTLAT-EDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIA 64
           +   V+   + +G +    T   G T L                             H+A
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETAL-----------------------------HLA 32

Query: 65  AKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHA-NVNNQAKHN 123
           A+     AA  LLE     +++ N   TPLH A       + ++LI+  A +++ +    
Sbjct: 33  ARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG 92

Query: 124 ITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 183
            TPL +A +     M+E LI+  A++ A    G + LH AA   + +   +L++ GA   
Sbjct: 93  TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 152

Query: 184 SKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
            +     TPL +A+  G     + L+++ AN + T ++   P   A ++    I+ LL  
Sbjct: 153 MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 212

Query: 244 AGAQPNATTNHG 255
                +    HG
Sbjct: 213 YNLVRS-PQLHG 223

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  147 bits (374), Expect = 2e-43
 Identities = 45/228 (19%), Positives = 63/228 (27%), Gaps = 70/228 (30%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLA-TEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLP 59
            A   +  GV + L+        A   DG TP                            
Sbjct: 64  AAVSADAQGVFQILIRNRATDLDARMHDGTTP---------------------------- 95

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
            L +AA+                                      + E LI  HA+VN  
Sbjct: 96  -LILAAR---------------------------------LAVEGMLEDLINSHADVNAV 121

Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 179
                + LH A     V    +L+  GAN + +     TPL  AAR G      +L++  
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 181

Query: 180 AALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLH 227
           A           P  IA      ++VR L E     +         LH
Sbjct: 182 ANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS-------PQLH 222

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  210 bits (536), Expect = 2e-67
 Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 11/224 (4%)

Query: 60  ALHIAAKKDDCKAAA----LLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHAN 115
            LH+A   ++          +  +    + ++N   TPLH+A       IAE L+    +
Sbjct: 11  FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD 70

Query: 116 VNNQAKHNITPLHVACKWGKVAMVELLISKGAN------IEAKTRDGLTPLHCAARSGHD 169
              +     TPLH+AC+ G +A V +L            ++A   +G T LH A+  G+ 
Sbjct: 71  PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL 130

Query: 170 NVIDILIEKGAALYSKTKA-GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQ 228
            ++++L+  GA + ++    G T LH+A      ++V  L++ GA+VN  T  GY+P   
Sbjct: 131 GIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 190

Query: 229 ASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIE 272
              +    I   L     +        +   +   +  +    E
Sbjct: 191 TWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  205 bits (523), Expect = 2e-65
 Identities = 54/200 (27%), Positives = 80/200 (40%), Gaps = 11/200 (5%)

Query: 86  KSNSHFTPLHIAAHYGNTN----IAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVEL 141
            +    + LH+A  +        +   +    A +N Q     TPLH+A    +  + E 
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 142 LISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA------ALYSKTKAGFTPLHI 195
           L+  G + E +   G TPLH A   G    + +L +          L +    G T LH+
Sbjct: 64  LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123

Query: 196 ASHFGQLNMVRYLVENGANVNATTNL-GYTPLHQASQQGRVLIIDLLLGAGAQPNATTNH 254
           AS  G L +V  LV  GA+VNA     G T LH A       ++ LLL  GA  N  T  
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 183

Query: 255 GQTALNIAQKLGYISVIETL 274
           G +   +        + + L
Sbjct: 184 GYSPYQLTWGRPSTRIQQQL 203

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  142 bits (361), Expect = 3e-41
 Identities = 35/184 (19%), Positives = 61/184 (33%), Gaps = 11/184 (5%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLP- 59
           +A   N   +   LL  G +  L    G TPL +A +QG    V VL ++ T   +    
Sbjct: 51  LAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSIL 110

Query: 60  ---------ALHIAAKKDDCKAAALLLENDHSPDVKSNSH-FTPLHIAAHYGNTNIAELL 109
                     LH+A+         LL+      + +   +  T LH+A    N ++  LL
Sbjct: 111 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 170

Query: 110 IQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHD 169
           ++  A+VN       +P  +        + + L            +          S   
Sbjct: 171 LKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFT 230

Query: 170 NVID 173
              +
Sbjct: 231 EFTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  126 bits (318), Expect = 6e-35
 Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 10/135 (7%)

Query: 150 EAKTRDGLTPLHCAARSGH----DNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV 205
           +  T DG + LH A           VI  +    A L  +     TPLH+A    Q  + 
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61

Query: 206 RYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP------NATTNHGQTAL 259
             L+  G +       G TPLH A +QG +  + +L  +   P       AT  +G T L
Sbjct: 62  EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121

Query: 260 NIAQKLGYISVIETL 274
           ++A   GY+ ++E L
Sbjct: 122 HLASIHGYLGIVELL 136

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  202 bits (516), Expect = 2e-65
 Identities = 37/162 (22%), Positives = 70/162 (43%)

Query: 92  TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
             +H  A  G        I++   +N+  +   TPL  A   G++A+VE L+  GA+ + 
Sbjct: 5   LSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64

Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN 211
             +   + L  A   G+ +++ +L++ G  +      G TPL  A H   +  V+ L+E+
Sbjct: 65  LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 124

Query: 212 GANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN 253
           GA+    T+ GY  +  A   G   +  ++     +      
Sbjct: 125 GADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  183 bits (467), Expect = 6e-58
 Identities = 37/161 (22%), Positives = 72/161 (44%)

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
           ++H  A + +    A  +E ++  +      FTPL  AA +G   + E L+Q  A+    
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65

Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 179
            K   + L +AC  G   +V++L+  G ++     +G TPL  A    H   + +L+E G
Sbjct: 66  GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 125

Query: 180 AALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTN 220
           A    +T +G+  + +A   G  ++ + +  +   +     
Sbjct: 126 ADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  181 bits (461), Expect = 4e-57
 Identities = 44/153 (28%), Positives = 72/153 (47%)

Query: 122 HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA 181
            N   +H     G++  +   I +   I     +G TPL  AA  G   V++ L++ GA 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 182 LYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 241
                K   + L +A   G  ++V+ L++ G +VN     G TPL  A     V  + +L
Sbjct: 62  PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 121

Query: 242 LGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           L +GA P   T+ G  ++++A  LGY SV + +
Sbjct: 122 LESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  141 bits (358), Expect = 1e-41
 Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 4/159 (2%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
             A +     +   + +        E+GFTPL  A   G   VV  LL+N       GK 
Sbjct: 9   QLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG 68

Query: 57  KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
           +  AL +A  K       +LL+     +    +  TPL  A H  +    ++L++  A+ 
Sbjct: 69  RESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP 128

Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRD 155
             +       + +A   G  ++ +++ S    +    ++
Sbjct: 129 TIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  201 bits (513), Expect = 8e-65
 Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 1/167 (0%)

Query: 92  TPLHIAAHYGNTNIAELLIQKHAN-VNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
             +H  A  G  +  +  ++K  N VN   +   TPL  A  +G++  V  L+  GA+  
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63

Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
              ++  + L  A+  G+ +++ +L+E+   +      G TPL  A     +  V  L+ 
Sbjct: 64  ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA 123

Query: 211 NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQT 257
            GA++    + GYTP+  A   G   +  ++     +   +      
Sbjct: 124 RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  186 bits (475), Expect = 3e-59
 Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 1/167 (0%)

Query: 60  ALHIAAKKDDCKAAALLLEND-HSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
           ++H  A + +       L    +  +      FTPL  A+ +G       L++  A+ + 
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64

Query: 119 QAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178
            AK   + L +A   G   +V LL+ +  +I     +G TPL  A R  H   ++ L+ +
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR 124

Query: 179 GAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTP 225
           GA L ++  +G+TP+ +A   G   + + +  +   +  +  +   P
Sbjct: 125 GADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  172 bits (439), Expect = 1e-53
 Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 1/151 (0%)

Query: 125 TPLHVACKWGKVAMVELLISKGAN-IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 183
             +H     G++  ++  + KG N +      G TPL  A+  G    +  L+E GA  +
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63

Query: 184 SKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
              K   + L +AS  G  ++V  L+E   ++N     G TPL  A +   V  ++ LL 
Sbjct: 64  ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA 123

Query: 244 AGAQPNATTNHGQTALNIAQKLGYISVIETL 274
            GA      + G T +++A  LGY  V + +
Sbjct: 124 RGADLTTEADSGYTPMDLAVALGYRKVQQVI 154

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  162 bits (412), Expect = 1e-49
 Identities = 44/193 (22%), Positives = 71/193 (36%), Gaps = 30/193 (15%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLAT-EDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLP 59
             A +     ++  L KG N      E GFTPL  A   G    V  LLE          
Sbjct: 8   QLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD------ 61

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
                                  P + +    + L +A+  G T+I  LL+++  ++N  
Sbjct: 62  -----------------------PHILAKERESALSLASTGGYTDIVGLLLERDVDINIY 98

Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 179
             +  TPL  A +   V  VE L+++GA++  +   G TP+  A   G+  V  ++    
Sbjct: 99  DWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158

Query: 180 AALYSKTKAGFTP 192
             L+        P
Sbjct: 159 LKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  132 bits (334), Expect = 4e-38
 Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 1/120 (0%)

Query: 156 GLTPLHCAARSGHDNVIDILIEKGAALY-SKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
               +H  A  G  + +   + KG  L     + GFTPL  AS FG++  VR+L+E GA+
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 215 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
            +       + L  AS  G   I+ LLL      N    +G T L  A +  ++  +E L
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  200 bits (512), Expect = 1e-64
 Identities = 52/169 (30%), Positives = 76/169 (44%), Gaps = 1/169 (0%)

Query: 87  SNSHFTPLHIAAHYGNTNIAELLIQKHAN-VNNQAKHNITPLHVACKWGKVAMVELLISK 145
           S      +      GN     L +    N +N    H  +PLH AC+ G+ A+VE+LI +
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV 205
           GA I    R   TPLH AA  GH +++  L++  A + +  + G  PLH A  +GQ  + 
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVA 121

Query: 206 RYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNH 254
             LV NGA V+     G  P+ +A    R L+ +     G   N     
Sbjct: 122 EDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYK 170

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  186 bits (476), Expect = 3e-59
 Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 7/176 (3%)

Query: 60  ALHIAAKKDDCKAAALLLEN-DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
            +    ++ +  A  L L+N ++  +   +  F+PLH A   G + + E+LI + A +N 
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 67

Query: 119 QAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178
             + + TPLH+A   G   +V+ L+   A+I A    G  PLH A   G D V + L+  
Sbjct: 68  MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN 127

Query: 179 GAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR 234
           GA +    K G  P+  A    +  +     + G N+N        P      +G 
Sbjct: 128 GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR------IPYKDTFWKGT 177

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  171 bits (437), Expect = 2e-53
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 1/151 (0%)

Query: 125 TPLHVACKWGKVAMVELLISKGAN-IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 183
             +   C+ G    V L +    N +      G +PLH A R G   V+++LI +GA + 
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 66

Query: 184 SKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
              +   TPLH+A+  G  ++V+ L++  A++NA    G  PLH A   G+  + + L+ 
Sbjct: 67  VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA 126

Query: 244 AGAQPNATTNHGQTALNIAQKLGYISVIETL 274
            GA  +    +G+  ++ A+      + E  
Sbjct: 127 NGALVSICNKYGEMPVDKAKAPLRELLRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  118 bits (299), Expect = 9e-33
 Identities = 37/200 (18%), Positives = 61/200 (30%), Gaps = 68/200 (34%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
            A +E    VV  L+ +G    +      TP                             
Sbjct: 45  WACREGRSAVVEMLIMRGARINVMNRGDDTP----------------------------- 75

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
           LH+AA                                  +G+ +I + L+Q  A++N   
Sbjct: 76  LHLAA---------------------------------SHGHRDIVQKLLQYKADINAVN 102

Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
           +H   PLH AC WG+  + E L++ GA +    + G  P+  A     + + +   + G 
Sbjct: 103 EHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162

Query: 181 ALYSKTKAGFTPLHIASHFG 200
            L         P       G
Sbjct: 163 NL------NRIPYKDTFWKG 176

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 80.6 bits (200), Expect = 2e-18
 Identities = 26/168 (15%), Positives = 39/168 (23%), Gaps = 68/168 (40%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           +AA   H  +V+ LL    +     E G  P                             
Sbjct: 78  LAASHGHRDIVQKLLQYKADINAVNEHGNVP----------------------------- 108

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
           LH A                                   +G   +AE L+   A V+   
Sbjct: 109 LHYAC---------------------------------FWGQDQVAEDLVANGALVSICN 135

Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGH 168
           K+   P+  A    +  + E     G N+         P       G 
Sbjct: 136 KYGEMPVDKAKAPLRELLRERAEKMGQNLNR------IPYKDTFWKGT 177

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  196 bits (500), Expect = 2e-62
 Identities = 46/197 (23%), Positives = 86/197 (43%), Gaps = 7/197 (3%)

Query: 85  VKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLIS 144
           +K+      L  A       + E+L      V+       TPL++A     + + + LI 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60

Query: 145 KGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSKTKAGFTPLHIASHFGQLN 203
           +GA+I  +     +P   A   G   ++  +++     L    + G   L  A+  G ++
Sbjct: 61  RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID 120

Query: 204 MVRYLVENG-ANVNATTNLGYTPLHQA-----SQQGRVLIIDLLLGAGAQPNATTNHGQT 257
            V+ L+E+G  +++   + GYT L +A       Q    I+ LL+  GA  +   N G+T
Sbjct: 121 NVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRT 180

Query: 258 ALNIAQKLGYISVIETL 274
           A++ A + GY  + + L
Sbjct: 181 AMDYANQKGYTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  182 bits (465), Expect = 3e-57
 Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 7/191 (3%)

Query: 59  PALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
             L  A ++D  K   +L +  +  D       TPL+IA H  +  IA+ LI + A++N 
Sbjct: 8   ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67

Query: 119 QAKHNITPLHVACKWGKVAMVELLISKGA-NIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
           Q   + +P   A   G+  ++  ++     ++    R G   L  AA  GH + + +L+E
Sbjct: 68  QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLE 127

Query: 178 KGAA-LYSKTKAGFTPLHIASHF-----GQLNMVRYLVENGANVNATTNLGYTPLHQASQ 231
            G   +  +   G+T L  A           ++V+ L+ENGA+ +   N G T +  A+Q
Sbjct: 128 DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQ 187

Query: 232 QGRVLIIDLLL 242
           +G   I  +L 
Sbjct: 188 KGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  161 bits (411), Expect = 4e-49
 Identities = 41/197 (20%), Positives = 83/197 (42%), Gaps = 11/197 (5%)

Query: 25  TEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEND 80
           T +    L  A Q+   +V  +L +     D         L+IA   +D + A  L++  
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 81  HSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHA-NVNNQAKHNITPLHVACKWGKVAMV 139
              +++++   +P   A   G T I   +++    ++N   ++    L  A + G +  V
Sbjct: 63  ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNV 122

Query: 140 ELLISKG-ANIEAKTRDGLTPLHCAA-----RSGHDNVIDILIEKGAALYSKTKAGFTPL 193
           +LL+  G  +I+ +   G T L  A         + +++ +L+E GA    K  +G T +
Sbjct: 123 KLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAM 182

Query: 194 HIASHFGQLNMVRYLVE 210
             A+  G   + + L +
Sbjct: 183 DYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  146 bits (371), Expect = 3e-43
 Identities = 35/188 (18%), Positives = 69/188 (36%), Gaps = 11/188 (5%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
            A Q +   V   L            +G TPL +A+      +   L++     + +  +
Sbjct: 12  AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSI 71

Query: 57  KLPALHIAAKKDDCKAAALLLENDHS-PDVKSNSHFTPLHIAAHYGNTNIAELLIQK-HA 114
                  A  +   +  A +L++     +  +      L  AA  G+ +  +LL++    
Sbjct: 72  SDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE 131

Query: 115 NVNNQAKHNITPLHVACKW-----GKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHD 169
           +++ Q     T L  A            +V+LL+  GA+   K   G T +  A + G+ 
Sbjct: 132 DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYT 191

Query: 170 NVIDILIE 177
            +  IL +
Sbjct: 192 EISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 79.0 bits (196), Expect = 1e-17
 Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 11/124 (8%)

Query: 1   MAAQENHDGVVRYLLSKGG-NQTLATEDGFTPLAVAMQQGHDRVVAVLLEN-----DTKG 54
            A  +    ++ Y+L     +       G   L  A ++GH   V +LLE+     D + 
Sbjct: 78  YAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQN 137

Query: 55  KVKLPALHIAAKKDDCKA-----AALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELL 109
                AL  A    +          LL+EN     +K NS  T +  A   G T I+++L
Sbjct: 138 DFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197

Query: 110 IQKH 113
            Q +
Sbjct: 198 AQYN 201

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  194 bits (496), Expect = 2e-61
 Identities = 35/180 (19%), Positives = 64/180 (35%), Gaps = 4/180 (2%)

Query: 92  TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
             L               I     V       +  L  +   G+  +V+ +I +  +   
Sbjct: 7   VSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSL 65

Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN 211
              +G+T LH A  +GH  ++  L++ G  + +    G+TPLH A+    + + ++LVE+
Sbjct: 66  PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125

Query: 212 GANVNATTN---LGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYI 268
           GA V A T           +  ++G       L G   +          AL   +     
Sbjct: 126 GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDD 185

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  189 bits (482), Expect = 3e-59
 Identities = 42/209 (20%), Positives = 74/209 (35%), Gaps = 7/209 (3%)

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNS-HFTPLHIAAHYGNTNIAELLIQKHANVNN 118
           +L    + +  K  +  +   H   VK N      L  ++  G  ++ + +I +  + + 
Sbjct: 8   SLPPGKRTNLRKTGSERIA--HGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL 65

Query: 119 QAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178
                IT LH A   G   +V+ L+  G N+ A   DG TPLHCAA   +  V   L+E 
Sbjct: 66  PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125

Query: 179 GAALYSKTKAG---FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV 235
           GAA+++ T +              G     ++L      +          L     Q   
Sbjct: 126 GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDD 185

Query: 236 LIIDLLLGAGAQPNATTNHGQTALNIAQK 264
            +  +  G         +  +     A+ 
Sbjct: 186 ELP-MKEGDCMTIIHREDEDEIEWWWARL 213

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  157 bits (400), Expect = 5e-47
 Identities = 33/239 (13%), Positives = 61/239 (25%), Gaps = 38/239 (15%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
              + N        ++ G                                          
Sbjct: 11  PGKRTNLRKTGSERIAHGMRVK-FNPLPLAL----------------------------- 40

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
           L  ++ + +      ++     P + ++   T LH A   G+T I + L+Q   NVN   
Sbjct: 41  LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100

Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGL---TPLHCAARSGHDNVIDILIE 177
               TPLH A     V + + L+  GA + A T   +            G+      L  
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 160

Query: 178 KGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATT--NLGYTPLHQASQQGR 234
               +    K     L          +    ++ G  +      +        A    +
Sbjct: 161 VQEKMGIMNKGVIYALWDYEPQNDDEL---PMKEGDCMTIIHREDEDEIEWWWARLNDK 216

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  131 bits (332), Expect = 5e-37
 Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 1/120 (0%)

Query: 155 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
            G   L    R+         I  G  +          L  +S  G+ ++V+ ++    +
Sbjct: 4   TGQVSLPPGKRTNLRKTGSERIAHGMRV-KFNPLPLALLLDSSLEGEFDLVQRIIYEVDD 62

Query: 215 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
            +   + G T LH A   G   I+  L+  G   NA  + G T L+ A     + V + L
Sbjct: 63  PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  128 bits (324), Expect = 9e-36
 Identities = 29/237 (12%), Positives = 68/237 (28%), Gaps = 52/237 (21%)

Query: 2   AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
           ++ E    +V+ ++ +  + +L  ++G T                              L
Sbjct: 44  SSLEGEFDLVQRIIYEVDDPSLPNDEGITA-----------------------------L 74

Query: 62  HIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN---N 118
           H A      +    L++   + +   +  +TPLH AA   N  + + L++  A V     
Sbjct: 75  HNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTY 134

Query: 119 QAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178
                        + G     + L      +    +  +  L        D   ++ +++
Sbjct: 135 SDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDD---ELPMKE 191

Query: 179 GAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV 235
           G  +               H    + + +      +       GY P +      R+
Sbjct: 192 GDCMT------------IIHREDEDEIEWWWARLND-----KEGYVPRNLLGLYPRI 231

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 58.0 bits (141), Expect = 4e-10
 Identities = 17/167 (10%), Positives = 39/167 (23%), Gaps = 52/167 (31%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDG---FTPLAVAMQQGHDRVVAVLLENDTKGKVK 57
            AA  N+  V ++L+  G      T             M++G+ +               
Sbjct: 109 CAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS------------- 155

Query: 58  LPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN 117
                             L        + +      L         N  EL +++   + 
Sbjct: 156 ----------------QFLYGVQEKMGIMNKGVIYALWDYEP---QNDDELPMKEGDCMT 196

Query: 118 NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAA 164
              +                 +E   ++  +     ++G  P +   
Sbjct: 197 IIHR------------EDEDEIEWWWARLND-----KEGYVPRNLLG 226

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  188 bits (481), Expect = 8e-60
 Identities = 57/189 (30%), Positives = 84/189 (44%), Gaps = 6/189 (3%)

Query: 86  KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK 145
              +      I          + L       N +  +N TPL VAC  G    ++ L+  
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLR------NYRDSYNRTPLMVACMLGMENAIDKLVEN 57

Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV 205
              +E K  +G T L  A ++    + + L+ KG+ + +K  +G TPL  +  FG   M 
Sbjct: 58  FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMS 117

Query: 206 RYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKL 265
            +L+E+GANVN     G TPL  AS+ GR  I+  LL  GA  +A    G TA   A+  
Sbjct: 118 YFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIF 177

Query: 266 GYISVIETL 274
           G   VI+  
Sbjct: 178 GRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  185 bits (473), Expect = 1e-58
 Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 6/183 (3%)

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
              I  +K         L N      + + + TPL +A   G  N  + L++    + ++
Sbjct: 11  VEKIKDEKS-INQNLDFLRN-----YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDK 64

Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 179
                T L  A K  ++ + E L+SKG+N+  K   G TPL  +   G+  +   L+E G
Sbjct: 65  DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG 124

Query: 180 AALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIID 239
           A +  +   G TPL +AS +G+  +V+ L+E GA+++A    G T    A   GR  +I 
Sbjct: 125 ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIK 184

Query: 240 LLL 242
           +  
Sbjct: 185 IFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  164 bits (418), Expect = 2e-50
 Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 2/188 (1%)

Query: 26  EDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDV 85
           ++G     +  ++  ++ +  L     +       L +A       A   L+EN    + 
Sbjct: 6   KNGEIVEKIKDEKSINQNLDFLRN--YRDSYNRTPLMVACMLGMENAIDKLVENFDKLED 63

Query: 86  KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK 145
           K     T L  A       IAE L+ K +NVN +     TPL  +  +G   M   L+  
Sbjct: 64  KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEH 123

Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV 205
           GAN+  +  +G TPL  A++ G   ++  L+E GA + ++   G T    A  FG+  ++
Sbjct: 124 GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVI 183

Query: 206 RYLVENGA 213
           +   E   
Sbjct: 184 KIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  144 bits (367), Expect = 1e-42
 Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 10/184 (5%)

Query: 2   AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVK 57
             +++ +  + +L +   +         TPL VA   G +  +  L+EN    + K    
Sbjct: 15  KDEKSINQNLDFLRNYRDS------YNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEG 68

Query: 58  LPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN 117
             AL  A K +    A  LL    + + K  S  TPL  +  +G + ++  L++  ANVN
Sbjct: 69  STALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN 128

Query: 118 NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
           ++     TPL VA K+G+  +V+ L+  GA+I A+   GLT    A   G   VI I  E
Sbjct: 129 DRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188

Query: 178 KGAA 181
              A
Sbjct: 189 VRRA 192

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  142 bits (362), Expect = 6e-42
 Identities = 41/158 (25%), Positives = 62/158 (39%), Gaps = 6/158 (3%)

Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
           ++  K+      +  +      ++ L         +     TPL  A   G +N ID L+
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLV 55

Query: 177 EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
           E    L  K   G T L  A    +L +   L+  G+NVN     G TPL  +   G   
Sbjct: 56  ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSE 115

Query: 237 IIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           +   LL  GA  N     G+T L +A K G   +++ L
Sbjct: 116 MSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  190 bits (484), Expect = 8e-60
 Identities = 35/204 (17%), Positives = 68/204 (33%), Gaps = 6/204 (2%)

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
            +  A    + +    L   +      ++   T        G        +     V  Q
Sbjct: 15  KVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR-----TGLIPSNYVAEQ 69

Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI-EK 178
           A+    PLH A K G ++ +   +     +    + G T L+ A   GH +++++L  + 
Sbjct: 70  AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQP 129

Query: 179 GAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII 238
              L  + K G T LH A+  G  ++V+ L+  GA  +            A+      ++
Sbjct: 130 NIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLL 189

Query: 239 DLLLGAGAQPNATTNHGQTALNIA 262
               G  A    +          +
Sbjct: 190 KKKQGTDAVRTLSNAEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  187 bits (478), Expect = 6e-59
 Identities = 39/215 (18%), Positives = 73/215 (33%), Gaps = 10/215 (4%)

Query: 24  ATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEN 79
             + G   +  A+     R    L            +          K         L  
Sbjct: 8   PVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSK-----GRTGLIP 62

Query: 80  DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMV 139
            +    ++ S   PLH AA  GN +     +     VN   K   T L+ AC  G   +V
Sbjct: 63  SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIV 122

Query: 140 ELLISK-GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASH 198
           E+L ++    +  + + G T LH AA  G+ +++ +L+ KGA    +         +A++
Sbjct: 123 EMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATN 182

Query: 199 FGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 233
               ++++      A    +    Y     +  + 
Sbjct: 183 AACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  180 bits (460), Expect = 3e-56
 Identities = 37/204 (18%), Positives = 71/204 (34%), Gaps = 2/204 (0%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
            A           L  + G+    T+   T       +G   ++      + + +     
Sbjct: 18  RALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE-QAESIDNP 76

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKH-ANVNNQ 119
           LH AAK+ +       L+N    +    +  T L+ A H G+ +I E+L  +    +N Q
Sbjct: 77  LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQ 136

Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 179
            K   T LH A   G   +V+LL++KGA  + +  +       A  +   +++       
Sbjct: 137 NKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTD 196

Query: 180 AALYSKTKAGFTPLHIASHFGQLN 203
           A         +     +      +
Sbjct: 197 AVRTLSNAEDYLDDEDSDLEHHHH 220

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  179 bits (456), Expect = 1e-55
 Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 6/184 (3%)

Query: 92  TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
             +  A +       + L  +  ++      + T        G        +     +  
Sbjct: 14  VKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG-----RTGLIPSNYVAE 68

Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLV-E 210
           +      PLH AA+ G+ + +   ++    +    KAG T L+ A H G  ++V  L  +
Sbjct: 69  QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQ 128

Query: 211 NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISV 270
               +N    LG T LH A+ +G   I+ LLL  GA+ +      + A ++A      S+
Sbjct: 129 PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASL 188

Query: 271 IETL 274
           ++  
Sbjct: 189 LKKK 192

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  142 bits (361), Expect = 2e-41
 Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 6/159 (3%)

Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
               K     +  A    +    + L  +  +I   T    T        G        +
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR-----TGL 60

Query: 177 EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
                +  + ++   PLH A+  G L+ +R  ++N   VN     G T L+ A   G   
Sbjct: 61  IPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKD 120

Query: 237 IIDLLLG-AGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           I+++L      + N     G TAL+ A   GY  +++ L
Sbjct: 121 IVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLL 159

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 83.1 bits (206), Expect = 5e-19
 Identities = 14/95 (14%), Positives = 28/95 (29%), Gaps = 5/95 (5%)

Query: 180 AALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIID 239
                  K G   +  A +  +      L     ++   T++  T   + + +GR  +I 
Sbjct: 3   KPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI- 61

Query: 240 LLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
                              L+ A K G +S +   
Sbjct: 62  ----PSNYVAEQAESIDNPLHEAAKRGNLSWLREC 92

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 8/61 (13%), Positives = 14/61 (22%)

Query: 216 NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLK 275
                 G   + +A         D L          T+   T        G   +I +  
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNY 65

Query: 276 I 276
           +
Sbjct: 66  V 66

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  183 bits (468), Expect = 4e-58
 Identities = 52/151 (34%), Positives = 83/151 (54%)

Query: 92  TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
             L  AA  G  +   +L+   A+VN +     TPLH+A   G + +VE+L+  GA++ A
Sbjct: 16  KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA 75

Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN 211
               G+TPL  AA  GH  ++++L++ GA + +    G TPLH+A+ FG L +V  L++N
Sbjct: 76  VDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135

Query: 212 GANVNATTNLGYTPLHQASQQGRVLIIDLLL 242
           GA+VNA    G T    +   G   + ++L 
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  182 bits (465), Expect = 1e-57
 Identities = 58/164 (35%), Positives = 98/164 (59%), Gaps = 1/164 (0%)

Query: 112 KHANVNNQAKHNI-TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDN 170
           + ++ ++    ++   L  A + G+   V +L++ GA++ A+   G TPLH AA +GH  
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61

Query: 171 VIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQAS 230
           ++++L++ GA + +   AG TPL +A+ FG L +V  L++NGA+VNA    G+TPLH A+
Sbjct: 62  IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA 121

Query: 231 QQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
             G + I+++LL  GA  NA    G+TA +I+   G   + E L
Sbjct: 122 MFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  160 bits (408), Expect = 4e-49
 Identities = 48/151 (31%), Positives = 83/151 (54%)

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
            L  AA+        +L+ N    + +  S +TPLH+AA  G+  I E+L++  A+VN  
Sbjct: 17  KLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV 76

Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 179
               +TPL +A  +G + +VE+L+  GA++ A   +G TPLH AA  GH  ++++L++ G
Sbjct: 77  DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136

Query: 180 AALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
           A + ++ K G T   I+   G  ++   L +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  141 bits (358), Expect = 1e-41
 Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 4/156 (2%)

Query: 27  DGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLENDHS 82
           D    L  A + G D  V +L+ N    + +       LH+AA     +   +LL+N   
Sbjct: 13  DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72

Query: 83  PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELL 142
            +   ++  TPL +AA +G+  I E+L++  A+VN       TPLH+A  +G + +VE+L
Sbjct: 73  VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132

Query: 143 ISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178
           +  GA++ A+ + G T    +  +G++++ +IL + 
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 57.4 bits (140), Expect = 2e-10
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
           +AA   H  +V  LL  G +      +G TPL +A   GH  +V VLL+N    + + K 
Sbjct: 86  LAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKF 145

Query: 57  KLPALHIAAKKDDCKAAALLLEND 80
              A  I+    +   A +L + +
Sbjct: 146 GKTAFDISIDNGNEDLAEILQKLN 169

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  103 bits (258), Expect = 2e-26
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 19/138 (13%)

Query: 156 GLTPLHCAARSGHDNVID-ILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
             +PL  AA+      +  +L  +G  ++ +   G T LHIA+ +  L     L+E    
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 215 V-----NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN-------------HGQ 256
           +      +    G T LH A     V ++  LL  GA  +A                +G+
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122

Query: 257 TALNIAQKLGYISVIETL 274
             L+ A  +G   ++  L
Sbjct: 123 HPLSFAACVGSEEIVRLL 140

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 221 LGYTPLHQASQQGRV-LIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           +  +PL  A+++  V  +  LL   G + +     G+TAL+IA     +     L
Sbjct: 2   IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVL 56

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  177 bits (452), Expect = 1e-55
 Identities = 52/156 (33%), Positives = 76/156 (48%), Gaps = 2/156 (1%)

Query: 92  TPLHIAAHYGNTNIAELLIQKH-ANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
             L  AA  G+    + L      N  +      TPLH A  + +V++VE L+  GA++ 
Sbjct: 10  RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 69

Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
           AK + GL PLH A   GH  V ++L++ GA +       FTPLH A+  G+  + + L++
Sbjct: 70  AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 129

Query: 211 NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 246
           +GA+       G TPL      G   I DLL G  A
Sbjct: 130 HGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  172 bits (439), Expect = 8e-54
 Identities = 53/162 (32%), Positives = 79/162 (48%), Gaps = 5/162 (3%)

Query: 114 ANVNNQAKHNITPLHVACKWGKVAMVELLISK-GANIEAKTRDGLTPLHCAARSGHDNVI 172
           A  N++A      L  A K G V  V+ L +    N         TPLH AA     +V+
Sbjct: 2   AMGNSEAD---RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVV 58

Query: 173 DILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQ 232
           + L++ GA +++K K G  PLH A  +G   +   LV++GA VN      +TPLH+A+ +
Sbjct: 59  EYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK 118

Query: 233 GRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           G+  I  LLL  GA P      G T L++ +  G   + + L
Sbjct: 119 GKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  162 bits (413), Expect = 6e-50
 Identities = 49/156 (31%), Positives = 71/156 (45%), Gaps = 4/156 (2%)

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDV--KSNSHFTPLHIAAHYGNTNIAELLIQKHANVN 117
            L  AAK  D +    L     S +         TPLH AA Y   ++ E L+Q  A+V+
Sbjct: 11  QLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 69

Query: 118 NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
            + K  + PLH AC +G   + ELL+  GA +        TPLH AA  G   +  +L++
Sbjct: 70  AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 129

Query: 178 KGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA 213
            GA    K + G TPL +    G  ++   L  + A
Sbjct: 130 HGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  139 bits (352), Expect = 9e-41
 Identities = 49/181 (27%), Positives = 66/181 (36%), Gaps = 31/181 (17%)

Query: 1   MAAQENHDGVVRYLLSKGG-NQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLP 59
            AA+      V+ L +    N         TP                            
Sbjct: 14  EAAKAGDVETVKKLCTVQSVNCRDIEGRQSTP---------------------------- 45

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
            LH AA  +       LL++      K      PLH A  YG+  +AELL++  A VN  
Sbjct: 46  -LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA 104

Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 179
                TPLH A   GK  + +LL+  GA+   K RDG TPL      G  ++ D+L    
Sbjct: 105 DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA 163

Query: 180 A 180
           A
Sbjct: 164 A 164

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  178 bits (454), Expect = 2e-55
 Identities = 51/189 (26%), Positives = 89/189 (47%)

Query: 86  KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK 145
              S+    ++A       + E ++   +      + + T LH AC  G   +VE L+  
Sbjct: 3   GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 62

Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV 205
           G  +  K   G +PLH AA +G D ++  L+ KGA + +  + G TPLH A+   +  + 
Sbjct: 63  GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIA 122

Query: 206 RYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKL 265
             L+E GAN +A  +   T +H+A+ +G + ++ +LL   A  N     G T L++A   
Sbjct: 123 VMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE 182

Query: 266 GYISVIETL 274
             +   + L
Sbjct: 183 ERVEEAKFL 191

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  178 bits (452), Expect = 4e-55
 Identities = 63/217 (29%), Positives = 97/217 (44%), Gaps = 2/217 (0%)

Query: 58  LPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN 117
           +   ++A      +    +L +            T LH A   G+T I E L+Q    VN
Sbjct: 8   IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67

Query: 118 NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
           ++     +PLH+A   G   +V+ L+ KGA++ A  ++G TPLH AA      +  +L+E
Sbjct: 68  DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127

Query: 178 KGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLI 237
            GA   +K     T +H A+  G L MV  L+   A+ N     G TPLH A  + RV  
Sbjct: 128 GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEE 187

Query: 238 IDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
              L+  GA         +T L +A+  G + +I   
Sbjct: 188 AKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKR 222

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  166 bits (421), Expect = 2e-50
 Identities = 58/220 (26%), Positives = 94/220 (42%), Gaps = 6/220 (2%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
           +A     D +   +L+     T   +D  T L  A   GH  +V  LL+     + K   
Sbjct: 13  LAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72

Query: 57  KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
               LHIAA     +    LL      +  + +  TPLH AA      IA +L++  AN 
Sbjct: 73  GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132

Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
           + +  ++ T +H A   G + MV +L+   A+   +  +G TPLH A           L+
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192

Query: 177 EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN 216
            +GA++Y + K   TPL +A   G L ++   +  G   +
Sbjct: 193 TQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEAS 230

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  176 bits (448), Expect = 3e-55
 Identities = 51/156 (32%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 92  TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
             L  AA  G+      L+Q + NVN Q     T L V  K G   +   L+ +GAN + 
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANPDL 65

Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN 211
           K R G   +H AAR+G  + +  L+E  A +  +   G  PLH+A+  G L +V +LV++
Sbjct: 66  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125

Query: 212 GA-NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 246
            A NV    + G T    A   GR  ++ L+   GA
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  161 bits (409), Expect = 2e-49
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 2/151 (1%)

Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
             L  A   G +  +  L+    N+ A+   G T L      G+  +   L+ +GA    
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL 65

Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 244
           K + GF  +H A+  G L+ ++ L+E  A+VN   N G  PLH A+++G + +++ L+  
Sbjct: 66  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125

Query: 245 GAQ-PNATTNHGQTALNIAQKLGYISVIETL 274
            A       + G TA ++A+  G   V+  +
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  159 bits (406), Expect = 6e-49
 Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 2/155 (1%)

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
            L  AA + D +    LL+N+ + + ++    T L +    GN  IA  L+ + AN + +
Sbjct: 8   ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLK 66

Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 179
            +     +H A + G +  ++ L+   A++  +  +G  PLH AA+ GH  V++ L++  
Sbjct: 67  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126

Query: 180 AA-LYSKTKAGFTPLHIASHFGQLNMVRYLVENGA 213
           A+ +  +   G T   +A  +G+  +V  +  NGA
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  142 bits (360), Expect = 5e-42
 Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 6/162 (3%)

Query: 25  TEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEND 80
            E     LA A  +G    +  LL+N    + +      AL +     + + A  LL   
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRG 60

Query: 81  HSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVE 140
            +PD+K  + F  +H AA  G  +  + L++  A+VN +      PLH+A K G + +VE
Sbjct: 61  ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120

Query: 141 LLISKGA-NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA 181
            L+   A N+  +   G T    A   G + V+ ++   GA 
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  123 bits (311), Expect = 9e-35
 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 1/120 (0%)

Query: 155 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
                L  AA  G    +  L++    + ++   G T L +    G   + R L+  GAN
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGAN 62

Query: 215 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
            +     G+  +H A++ G +  +  LL   A  N   N G   L++A K G++ V+E L
Sbjct: 63  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 51.2 bits (124), Expect = 3e-08
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 219 TNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
                  L  A+ +G +  +  LL      NA    G+TAL + +  G   +   L
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRL 56

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  175 bits (446), Expect = 5e-55
 Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 1/150 (0%)

Query: 92  TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
             L  AA  G  +   +L+   A          +PLH+A ++G  +  E+L+  G + +A
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN 211
           +T+   TPLH AA  GH N++++L++ GA + +K     T LH A+      +V  L++ 
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122

Query: 212 GANVNATTNLGYTPLHQASQQGRVLIIDLL 241
           GA+V+  +    T    +   G   + ++L
Sbjct: 123 GADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  169 bits (431), Expect = 8e-53
 Identities = 48/151 (31%), Positives = 82/151 (54%), Gaps = 1/151 (0%)

Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
             L  A + G+   V +L++ GA        G +PLH AA+ GH +  ++L+  G +  +
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 244
           +TK   TPLH+A+  G  N+V  L+++GA+VNA   L  T LH A++     +++LL+  
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122

Query: 245 GAQPNATTNHGQTALNIAQKLGYISVIETLK 275
           GA  +  +   +TA +I+   G   + E L+
Sbjct: 123 GADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  157 bits (399), Expect = 6e-48
 Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 3/150 (2%)

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDV-KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
            L  AA+        +L+   +           +PLH+AA YG+ +  E+L++   + + 
Sbjct: 5   KLLEAARAGQDDEVRILMA--NGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 119 QAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178
           + K + TPLH+A   G   +VE+L+  GA++ AK    +T LH A    H  V+++LI+ 
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122

Query: 179 GAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
           GA +++++K   T   I+   G  ++   L
Sbjct: 123 GADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  139 bits (352), Expect = 7e-41
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 30/175 (17%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
            AA+   D  VR L++ G   T     G +P                             
Sbjct: 8   EAARAGQDDEVRILMANGAPFT-TDWLGTSP----------------------------- 37

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
           LH+AA+        +LL    S D ++    TPLH+AA  G+ NI E+L++  A+VN + 
Sbjct: 38  LHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD 97

Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
              +T LH A +     +VELLI  GA++  +++   T    +  +G++++ +IL
Sbjct: 98  MLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  125 bits (316), Expect = 1e-35
 Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 1/120 (0%)

Query: 155 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
           D    L  AAR+G D+ + IL+  GA   +    G +PLH+A+ +G  +    L+  G +
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 215 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
            +A T +  TPLH A+ +G   I+++LL  GA  NA      TAL+ A +  +  V+E L
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  175 bits (446), Expect = 4e-54
 Identities = 42/194 (21%), Positives = 73/194 (37%), Gaps = 7/194 (3%)

Query: 75  LLLENDHSPDVKSNSHFTP---LHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVAC 131
            +L    SP     +   P   L  AA  G   + +  +++  + +   +  IT LH A 
Sbjct: 3   SVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAI 62

Query: 132 KWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT-KAGF 190
                ++V+ LI+ GAN+ +    G TPLHCAA      +   L++ GAA+++ T   G 
Sbjct: 63  CGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGA 122

Query: 191 TPLHIASHF--GQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248
           T       +  G  +   YL +   ++    +     L   S +     +    G     
Sbjct: 123 TAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF-GDELSFREGESVTV 181

Query: 249 NATTNHGQTALNIA 262
                  +T    A
Sbjct: 182 LRRDGPEETDWWWA 195

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  168 bits (429), Expect = 2e-51
 Identities = 48/253 (18%), Positives = 75/253 (29%), Gaps = 31/253 (12%)

Query: 11  VRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDC 70
           +R +L K G+   A      PL                            L  AA   + 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLV--------------------------LLLDAALTGEL 34

Query: 71  KAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVA 130
           +     ++  + P   +    T LH A    N +I + LI   ANVN+   H  TPLH A
Sbjct: 35  EVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCA 94

Query: 131 CKWGKVAMVELLISKGANIEAKTR-DGLTPLHCAARS--GHDNVIDILIEKGAALYSKTK 187
                  +   L+  GA I A T  DG T          G+ +    L +   ++     
Sbjct: 95  ASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNS 154

Query: 188 AGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ 247
                L   S     + + +       V        T    A+  G+   +      G  
Sbjct: 155 GAVYALWDYSA-EFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY-FGLF 212

Query: 248 PNATTNHGQTALN 260
           P       +   +
Sbjct: 213 PRVKPQRSKVKHH 225

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  159 bits (405), Expect = 6e-48
 Identities = 35/164 (21%), Positives = 66/164 (40%), Gaps = 6/164 (3%)

Query: 107 ELLIQKHANVNNQAKHNITP---LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCA 163
             +++K  +     +  + P   L  A   G++ +V+  + +  +      +G+T LH A
Sbjct: 2   RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA 61

Query: 164 ARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNA-TTNLG 222
               + +++D LI  GA + S    G+TPLH A+      +   LV++GA + A T + G
Sbjct: 62  ICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDG 121

Query: 223 YTPLHQAS--QQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQK 264
            T   +    ++G       L           +    AL     
Sbjct: 122 ATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSA 165

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  138 bits (350), Expect = 9e-40
 Identities = 35/230 (15%), Positives = 61/230 (26%), Gaps = 34/230 (14%)

Query: 2   AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
           AA      VV+  + +  + +   E+G T                              L
Sbjct: 28  AALTGELEVVQQAVKEMNDPSQPNEEGITA-----------------------------L 58

Query: 62  HIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ-A 120
           H A    +      L+    + +   +  +TPLH AA   +T I   L+Q  A +     
Sbjct: 59  HNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTL 118

Query: 121 KHNITPLHVA--CKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178
               T        + G       L     ++       +  L   +    D  +     +
Sbjct: 119 SDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGD-ELSFREGE 177

Query: 179 GAALYSKTKAGFTPLHIASHFGQLNMV-RYLVENGANVNATTNLGYTPLH 227
              +  +     T    A+  GQ   V R        V    +      H
Sbjct: 178 SVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  106 bits (266), Expect = 2e-27
 Identities = 29/136 (21%), Positives = 46/136 (33%), Gaps = 30/136 (22%)

Query: 139 VELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASH 198
           +  ++ K  +     R  L PL                                L  A+ 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPL------------------------------VLLLDAAL 30

Query: 199 FGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTA 258
            G+L +V+  V+   + +     G T LH A       I+D L+ AGA  N+  +HG T 
Sbjct: 31  TGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTP 90

Query: 259 LNIAQKLGYISVIETL 274
           L+ A       +   L
Sbjct: 91  LHCAASCNDTVICMAL 106

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  171 bits (437), Expect = 1e-53
 Identities = 35/149 (23%), Positives = 54/149 (36%), Gaps = 2/149 (1%)

Query: 80  DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMV 139
           + +           L  AA  G       L++  AN N    +   P+ V    G   + 
Sbjct: 2   EPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVA 60

Query: 140 ELLISKGANIEAKTRDGLT-PLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASH 198
           ELL+  GA         LT P+H AAR G  + + +L   GA L  +   G  P+ +A  
Sbjct: 61  ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE 120

Query: 199 FGQLNMVRYLVENGANVNATTNLGYTPLH 227
            G  ++ RYL         + +       
Sbjct: 121 LGHRDVARYLRAAAGGTRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  162 bits (412), Expect = 6e-50
 Identities = 35/152 (23%), Positives = 56/152 (36%), Gaps = 4/152 (2%)

Query: 110 IQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHD 169
           ++  A  + +       L  A   G+V  V  L+  GAN  A    G  P+      G  
Sbjct: 1   MEPAAGSSMEPSA--DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSA 57

Query: 170 NVIDILIEKGAALYSKTKAGFT-PLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQ 228
            V ++L+  GA       A  T P+H A+  G L+ +  L   GA ++     G  P+  
Sbjct: 58  RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117

Query: 229 ASQQGRVLIIDLLLGAGAQPNATTNHGQTALN 260
           A + G   +   L  A      + +    A  
Sbjct: 118 AEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  135 bits (343), Expect = 1e-39
 Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 7/147 (4%)

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
            L  AA +   +    LLE   +P+  ++    P+ +    G+  +AELL+   A  N  
Sbjct: 15  WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCA 73

Query: 120 AKHNIT-PLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178
               +T P+H A + G +  + +L   GA ++ +   G  P+  A   GH +V   L   
Sbjct: 74  DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 133

Query: 179 GAALYSKTKAGFTPLHIASHFGQLNMV 205
                     G     I +  G  ++ 
Sbjct: 134 AG-----GTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  135 bits (342), Expect = 2e-39
 Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 4/133 (3%)

Query: 143 ISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQL 202
           +   A   +        L  AA  G    +  L+E GA   +    G  P+ +    G  
Sbjct: 1   MEPAAG--SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSA 57

Query: 203 NMVRYLVENGANVNATTNLGYT-PLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNI 261
            +   L+ +GA  N       T P+H A+++G +  + +L  AGA+ +     G+  +++
Sbjct: 58  RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117

Query: 262 AQKLGYISVIETL 274
           A++LG+  V   L
Sbjct: 118 AEELGHRDVARYL 130

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  103 bits (259), Expect = 3e-27
 Identities = 30/145 (20%), Positives = 47/145 (32%), Gaps = 11/145 (7%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
            AA       VR LL  G N       G  P+ V M  G  RV  +LL +    +     
Sbjct: 18  TAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCADPA 76

Query: 57  KL-PALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHAN 115
            L   +H AA++       +L       DV+      P+ +A   G+ ++A  L      
Sbjct: 77  TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG 136

Query: 116 VNNQAKHNITPLHVACKWGKVAMVE 140
                        +    G   + +
Sbjct: 137 TRGS-----NHARIDAAEGPSDIPD 156

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  171 bits (435), Expect = 2e-53
 Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 3/152 (1%)

Query: 92  TPLHIAAHYGNTN-IAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
             L  AA  G+   +  LL ++  + +   +   T L V   +G  A+   L+ +GA+  
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN 62

Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
            +   G +P+H AAR+G  + + +L+E GA +      G  P+H+A   G   +V +L  
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122

Query: 211 NGANVNATTNLGYTPLHQASQQGRVLIIDLLL 242
             ++++     G TPL  A Q+G   ++D+L 
Sbjct: 123 -ESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  158 bits (402), Expect = 2e-48
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 3/151 (1%)

Query: 125 TPLHVACKWGKVAMV-ELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 183
             L  A   G V  V  LL  +  + +A  R G T L      G   +   L+++GA+  
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPN 62

Query: 184 SKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
            +  +G +P+H A+  G L+ ++ LVE+GA+VN     G  P+H A Q+G   ++  L  
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA- 121

Query: 244 AGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           A +  +     G T L +A + G   +++ L
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  156 bits (397), Expect = 1e-47
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 3/152 (1%)

Query: 60  ALHIAAKKDDCKAAALLLENDH-SPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
            L  AA + D +    LL  +   PD  +    T L +   +G+T IA  L+++ A+ N 
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNV 63

Query: 119 QAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178
           Q     +P+H A + G +  +++L+  GA++      G  P+H A + GH  V+  L   
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-A 122

Query: 179 GAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
            + L+ +   G TPL +A   G  ++V  L  
Sbjct: 123 ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  131 bits (333), Expect = 4e-38
 Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 32/178 (17%)

Query: 1   MAAQENHDGVVRYLLSKGG-NQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLP 59
            AA       VR LL +   +       G T L V    G   +                
Sbjct: 8   GAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIA--------------- 51

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
                           LL+   SP+V+  S  +P+H AA  G  +  ++L++  A+VN  
Sbjct: 52  --------------LELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP 97

Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
                 P+H+A + G  A+V  L +  +++  +   GLTPL  A + G  +++DIL  
Sbjct: 98  DGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  117 bits (296), Expect = 1e-32
 Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 156 GLTPLHCAARSGHDNVIDILIEK-GAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
               L  AA  G    +  L+ +      +  + G T L +   FG   +   L++ GA+
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS 60

Query: 215 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
            N     G +P+H A++ G +  + +L+  GA  N     G   +++A + G+ +V+  L
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  173 bits (440), Expect = 5e-53
 Identities = 43/239 (17%), Positives = 78/239 (32%), Gaps = 33/239 (13%)

Query: 24  ATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEN 79
              +G     +  + GH               ++ +        AA+K D +A + LLE 
Sbjct: 11  TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYET---PWWTAARKADEQALSQLLE- 66

Query: 80  DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ-AKHNITPLHVACKWGKVAM 138
           D   D    +  T L   A  G+     LL +  A+++++  +  +T LH+A  + +  +
Sbjct: 67  DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV 126

Query: 139 VELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA------------------ 180
           VE L+  GA+IE +   GLT L  A            ++ G                   
Sbjct: 127 VEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEY 186

Query: 181 ----ALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV 235
                +  K   G    ++       +       + A   A        L  A  +  +
Sbjct: 187 AEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDY--EDGLEYAVAESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  166 bits (422), Expect = 3e-50
 Identities = 42/232 (18%), Positives = 80/232 (34%), Gaps = 17/232 (7%)

Query: 44  VAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNT 103
           V  ++ + T G+  +    I  K     +         + DV S    TP   AA   + 
Sbjct: 3   VNKIIGSRTAGEGAME-YLIEWKDGHSPSWVPSSY--IAADVVSEYE-TPWWTAARKADE 58

Query: 104 NIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK-TRDGLTPLHC 162
                L++   +V+   ++  T L      G    V LL   GA+++ +  R GLT LH 
Sbjct: 59  QALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 117

Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
           AA      V++ L+E GA +  + + G T L +A    +       ++ G  +       
Sbjct: 118 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV-- 175

Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
              + +        + +++   G         G+    + +           
Sbjct: 176 -INVLEGQVFEYAEVDEIVEKRG--------KGKDVEYLVRWKDGGDCEWVK 218

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 83.4 bits (207), Expect = 5e-19
 Identities = 19/138 (13%), Positives = 39/138 (28%), Gaps = 11/138 (7%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK-GKVKLP 59
           MAA      VV  L+  G +  +  E G T L +A +          ++   + G  K+ 
Sbjct: 117 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVI 176

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
            +      +  +   ++ +                ++       +   +     A     
Sbjct: 177 NVLEGQVFEYAEVDEIVEKRGKGK--------DVEYLVRWKDGGDCEWVKGVHVAEDV-- 226

Query: 120 AKHNITPLHVACKWGKVA 137
           AK     L  A     + 
Sbjct: 227 AKDYEDGLEYAVAESVIG 244

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 77.3 bits (191), Expect = 9e-17
 Identities = 20/119 (16%), Positives = 33/119 (27%), Gaps = 23/119 (19%)

Query: 156 GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANV 215
           G       +R+  +                   G     I    G            A+V
Sbjct: 1   GEVNKIIGSRTAGE-------------------GAMEYLIEWKDGHSPSWVPSSYIAADV 41

Query: 216 NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
            +      TP   A+++     +  LL      +A   +G+TAL     LG    +  L
Sbjct: 42  VSE---YETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLL 96

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  166 bits (422), Expect = 5e-51
 Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 5/160 (3%)

Query: 92  TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
               I    G++          A+V ++ +   TP   A +      +  L+ +  +++A
Sbjct: 16  MEYLIEWKDGHSPSWVPSSYIAADVVSEYE---TPWWTAARKADEQALSQLL-EDRDVDA 71

Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSK-TKAGFTPLHIASHFGQLNMVRYLVE 210
              +G T L   A  G D  + +L E GA L  +  + G T LH+A+ + +  +V  LVE
Sbjct: 72  VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 131

Query: 211 NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA 250
            GA++      G T L  A +  +       +  G +   
Sbjct: 132 LGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 171

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  153 bits (390), Expect = 2e-46
 Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 6/175 (3%)

Query: 44  VAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNT 103
           V  ++ + T G+  +    I  K     +         + DV S    TP   AA   + 
Sbjct: 2   VNKIIGSRTAGEGAME-YLIEWKDGHSPSWVPSSY--IAADVVSEYE-TPWWTAARKADE 57

Query: 104 NIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK-TRDGLTPLHC 162
                L+ +  +V+   ++  T L      G    V LL   GA+++ +  R GLT LH 
Sbjct: 58  QALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 116

Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNA 217
           AA      V++ L+E GA +  + + G T L +A    +       ++ G  +  
Sbjct: 117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 171

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  152 bits (387), Expect = 9e-46
 Identities = 35/164 (21%), Positives = 61/164 (37%), Gaps = 5/164 (3%)

Query: 112 KHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNV 171
                +  A        +  K G            A++ ++     TP   AAR   +  
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQA 59

Query: 172 IDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNAT-TNLGYTPLHQAS 230
           +  L+E    + +  + G T L   +  G    VR L E GA+++      G T LH A+
Sbjct: 60  LSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118

Query: 231 QQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
              R  +++ L+  GA        G TAL +A+++   +     
Sbjct: 119 GYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  146 bits (370), Expect = 3e-43
 Identities = 36/162 (22%), Positives = 65/162 (40%), Gaps = 9/162 (5%)

Query: 24  ATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLEN 79
              +G     +  + GH               ++ +        AA+K D +A + LLE+
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYET---PWWTAARKADEQALSQLLED 66

Query: 80  DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ-AKHNITPLHVACKWGKVAM 138
               D    +  T L   A  G+     LL +  A+++++  +  +T LH+A  + +  +
Sbjct: 67  -RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV 125

Query: 139 VELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
           VE L+  GA+IE +   GLT L  A            ++ G 
Sbjct: 126 VEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGR 167

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  115 bits (290), Expect = 2e-31
 Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 7/156 (4%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN---DTKGKVK 57
           +  ++ H            +      +  TP   A ++  ++ ++ LLE+   D   +  
Sbjct: 20  IEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALSQLLEDRDVDAVDENG 76

Query: 58  LPALHIAAKKDDCKAAALLLENDHSPDVK-SNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
             AL   A     K   LL E     D +      T LH+AA Y    + E L++  A++
Sbjct: 77  RTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI 136

Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK 152
             + +  +T L +A +  K       +  G  I  +
Sbjct: 137 EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLE 172

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  161 bits (411), Expect = 4e-50
 Identities = 56/123 (45%), Positives = 86/123 (69%)

Query: 91  FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
            TPLH+AA  G+  + +LL++  A+VN + K+  TPLH+A + G + +V+LL+  GA++ 
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
           AK ++G TPLH AAR+GH  V+ +L+E GA + +K K G TPLH+A+  G L +V+ L+E
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122

Query: 211 NGA 213
            GA
Sbjct: 123 AGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  157 bits (401), Expect = 1e-48
 Identities = 59/122 (48%), Positives = 86/122 (70%)

Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
           TPLH+A + G + +V+LL+  GA++ AK ++G TPLH AAR+GH  V+ +L+E GA + +
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 244
           K K G TPLH+A+  G L +V+ L+E GA+VNA    G TPLH A++ G + ++ LLL A
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123

Query: 245 GA 246
           GA
Sbjct: 124 GA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  139 bits (352), Expect = 2e-41
 Identities = 55/120 (45%), Positives = 82/120 (68%)

Query: 155 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
           +G TPLH AAR+GH  V+ +L+E GA + +K K G TPLH+A+  G L +V+ L+E GA+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 215 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           VNA    G TPLH A++ G + ++ LLL AGA  NA   +G+T L++A + G++ V++ L
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  138 bits (351), Expect = 3e-41
 Identities = 50/121 (41%), Positives = 78/121 (64%)

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
            LH+AA+    +   LLLE     + K  +  TPLH+AA  G+  + +LL++  A+VN +
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64

Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 179
            K+  TPLH+A + G + +V+LL+  GA++ AK ++G TPLH AAR+GH  V+ +L+E G
Sbjct: 65  DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124

Query: 180 A 180
           A
Sbjct: 125 A 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 67.8 bits (167), Expect = 2e-14
 Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 29/114 (25%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           +AA+  H  VV+ LL  G +     ++G TPL +A + GH  VV +LLE           
Sbjct: 41  LAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG--------- 91

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHA 114
               A                  + K  +  TPLH+AA  G+  + +LL++  A
Sbjct: 92  ----ADV----------------NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  156 bits (396), Expect = 8e-48
 Identities = 35/132 (26%), Positives = 65/132 (49%)

Query: 86  KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK 145
            ++   T LHIA+  G+    E L+Q  ++ N +     TPLH AC  G + +VELL+  
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65

Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV 205
            A +        +PLH AA++GH +++ +L+  GA+  +    G  P+         +++
Sbjct: 66  KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLL 125

Query: 206 RYLVENGANVNA 217
               +N ++  +
Sbjct: 126 LLPEKNESSSAS 137

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  152 bits (387), Expect = 2e-46
 Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 2/138 (1%)

Query: 114 ANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVID 173
            +         T LH+A   G +  VE L+  G++   K   G TPLH A   GH  V++
Sbjct: 2   IDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE 60

Query: 174 ILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG 233
           +L++  A + +      +PLH A+  G +++V+ L+  GA+ NA    G  P+     + 
Sbjct: 61  LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDES 120

Query: 234 RVLIIDLLLGAGAQPNAT 251
              ++ L     +  +A+
Sbjct: 121 MKSLLLLPEKNES-SSAS 137

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  142 bits (362), Expect = 1e-42
 Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 1/129 (0%)

Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV 205
           G +       G T LH A+  G    ++ L++ G+    K  AG+TPLH A + G L +V
Sbjct: 1   GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59

Query: 206 RYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKL 265
             L+++ A VN T     +PLH A++ G V I+ LLL  GA  NA    G   ++     
Sbjct: 60  ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE 119

Query: 266 GYISVIETL 274
              S++   
Sbjct: 120 SMKSLLLLP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  140 bits (355), Expect = 1e-41
 Identities = 43/121 (35%), Positives = 67/121 (55%)

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
            LHIA+ K D  +   LL+N   P+VK ++ +TPLH A ++G+  + ELL+Q  A VN  
Sbjct: 13  LLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT 72

Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 179
              N +PLH A K G V +V+LL+S GA+  A    GL P+         +++ +  +  
Sbjct: 73  GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132

Query: 180 A 180
           +
Sbjct: 133 S 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  102 bits (258), Expect = 3e-27
 Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 4/127 (3%)

Query: 26  EDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLENDH 81
             G T L +A  +G    V  LL+N    + K       LH A      K   LLL++  
Sbjct: 8   HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA 67

Query: 82  SPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVEL 141
             +     + +PLH AA  G+ +I +LL+   A+ N      + P+         +++ L
Sbjct: 68  LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLL 127

Query: 142 LISKGAN 148
                ++
Sbjct: 128 PEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 69.0 bits (170), Expect = 1e-14
 Identities = 19/118 (16%), Positives = 28/118 (23%), Gaps = 30/118 (25%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
            A    H  VV  LL              +P                             
Sbjct: 49  EACNHGHLKVVELLLQHKALVNTTGYQNDSP----------------------------- 79

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN 118
           LH AAK        LLL    S +  +     P+         ++  L   K+ + + 
Sbjct: 80  LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE-KNESSSA 136

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  159 bits (403), Expect = 2e-47
 Identities = 51/275 (18%), Positives = 87/275 (31%), Gaps = 58/275 (21%)

Query: 4   QENHDGVVRYLLSKGGNQT----LATEDGFTPLAVAM---QQGHDRVVAVLLENDTKGKV 56
            E   G++ YL       T         G T L  A+   Q G +  +  LL+ D     
Sbjct: 15  PEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID----- 69

Query: 57  KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
                          +       +     +     + LHIA    +    +LL++  A+V
Sbjct: 70  -------------KDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV 116

Query: 117 NNQAKHNI-------------TPLHVACKWGKVAMVELLISKG---ANIEAKTRDGLTPL 160
           + +A                  PL +A    +  +V  L+      A++EA    G T L
Sbjct: 117 HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL 176

Query: 161 HCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTN 220
           H       ++                    + L I  + G L M   L         + +
Sbjct: 177 HALVMIADNS-----------------PENSALVIHMYDGLLQMGARLCPTVQLEEISNH 219

Query: 221 LGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHG 255
            G TPL  A+++G++ I   +L       A  +H 
Sbjct: 220 QGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHH 254

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  143 bits (362), Expect = 2e-41
 Identities = 45/254 (17%), Positives = 79/254 (31%), Gaps = 55/254 (21%)

Query: 59  PALHIAAKKDDCKAAALLLE--------NDHSPDVKSNSHFTPLHIAA---HYGNTNIAE 107
             L     +   +    LLE           S   + ++  T L  A      G      
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 108 LLIQ-----------KHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTR-- 154
            L+Q            +A   ++     + LH+A +   +  V+LL+  GA++  +    
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 155 -----------DGLTPLHCAARSGHDNVIDILIEKG---AALYSKTKAGFTPLHIASHFG 200
                       G  PL  AA +   +V+  L+E     A+L +    G T LH      
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV--- 180

Query: 201 QLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALN 260
                         + A  +   + L      G + +   L         + + G T L 
Sbjct: 181 --------------MIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLK 226

Query: 261 IAQKLGYISVIETL 274
           +A K G I +   +
Sbjct: 227 LAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  110 bits (276), Expect = 9e-29
 Identities = 27/223 (12%), Positives = 54/223 (24%), Gaps = 69/223 (30%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           +A ++     V+ L+  G +  L     F                               
Sbjct: 96  IAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGE------------------ 137

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKH---ANVN 117
                                           PL +AA     ++   L++     A++ 
Sbjct: 138 -------------------------------LPLSLAACTKQWDVVTYLLENPHQPASLE 166

Query: 118 NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
                  T LH                    + A      + L      G   +   L  
Sbjct: 167 ATDSLGNTVLHALV-----------------MIADNSPENSALVIHMYDGLLQMGARLCP 209

Query: 178 KGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTN 220
                      G TPL +A+  G++ + R++++   +  A  +
Sbjct: 210 TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHH 252

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  154 bits (392), Expect = 3e-47
 Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 2/134 (1%)

Query: 114 ANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVID 173
             ++     +   L  A   G+V  V  L+  GA+  A  R G  P+      G   V +
Sbjct: 3   PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAE 61

Query: 174 ILIEKGAALYSKTKAGFT-PLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQ 232
           +L+  GA       A  T P+H A+  G L+ +  L   GA ++     G  P+  A +Q
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ 121

Query: 233 GRVLIIDLLLGAGA 246
           G   I   L  A  
Sbjct: 122 GHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  153 bits (389), Expect = 9e-47
 Identities = 35/132 (26%), Positives = 52/132 (39%), Gaps = 2/132 (1%)

Query: 84  DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI 143
            +   S    L  AA  G       L++  A+ N   +    P+ V    G   + ELL+
Sbjct: 6   HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLL 64

Query: 144 SKGANIEAKTRDGLT-PLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQL 202
             GA         LT P+H AAR G  + + +L   GA L      G  P+ +A   G  
Sbjct: 65  LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHR 124

Query: 203 NMVRYLVENGAN 214
           ++ RYL     +
Sbjct: 125 DIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  141 bits (357), Expect = 5e-42
 Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 2/130 (1%)

Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV 205
              I          L  AA  G    +  L+E GA   +  + G  P+ +    G   + 
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVA 60

Query: 206 RYLVENGANVNATTNLGYT-PLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQK 264
             L+ +GA  N       T P+H A+++G +  + +L  AGA+ +     G+  +++A++
Sbjct: 61  ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE 120

Query: 265 LGYISVIETL 274
            G+  +   L
Sbjct: 121 QGHRDIARYL 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  127 bits (323), Expect = 6e-37
 Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 2/122 (1%)

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
            L  AA +   +    LLE    P+  +     P+ +    G+  +AELL+   A  N  
Sbjct: 15  GLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCA 73

Query: 120 AKHNIT-PLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK 178
               +T P+H A + G +  + +L   GA ++     G  P+  A   GH ++   L   
Sbjct: 74  DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

Query: 179 GA 180
             
Sbjct: 134 TG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 91.7 bits (229), Expect = 4e-23
 Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 10/122 (8%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN-------DTK 53
            AA       VR LL  G +       G  P+ V M  G  +V  +LL +       D  
Sbjct: 18  TAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPA 76

Query: 54  GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKH 113
                  +H AA++       +L       DV       P+ +A   G+ +IA  L    
Sbjct: 77  TLT--RPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134

Query: 114 AN 115
            +
Sbjct: 135 GD 136

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  150 bits (381), Expect = 5e-45
 Identities = 29/184 (15%), Positives = 63/184 (34%), Gaps = 16/184 (8%)

Query: 86  KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHN---ITPLHVACKWGKVAMVELL 142
            + S +  +  AA  G       L +K          +      L       +  +   L
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 143 ISKGANIEAKTRDGLTPLHCAARSGHDNVID------ILIEKGAALYSKTKAGFTPLHIA 196
           I+KGA+I+++T++G T      + G +++        I +EKGA + +  K     +   
Sbjct: 62  INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKN 121

Query: 197 SHFGQLNMVR-------YLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN 249
                ++             ++G  +      G T L    +  + + + ++     + N
Sbjct: 122 IFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181

Query: 250 ATTN 253
              N
Sbjct: 182 LKEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  127 bits (322), Expect = 4e-36
 Identities = 30/173 (17%), Positives = 52/173 (30%), Gaps = 16/173 (9%)

Query: 118 NQAKHNITPLHVACKWGKVAMVELLISKGANI---EAKTRDGLTPLHCAARSGHDNVIDI 174
           + A      +  A   G       L  KG        K+      L          +   
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMF 60

Query: 175 LIEKGAALYSKTKAGFTPLHIASHFGQLN------MVRYLVENGANVNATTNLGYTPLHQ 228
           LI KGA + S+TK G T        G  +      + +  +E GA++ A        + +
Sbjct: 61  LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFK 120

Query: 229 ASQQGRVLIID-------LLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
                 V   +       +   +G Q       G TAL   ++      ++ +
Sbjct: 121 NIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMM 173

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  126 bits (318), Expect = 1e-35
 Identities = 26/208 (12%), Positives = 54/208 (25%), Gaps = 41/208 (19%)

Query: 27  DGFTPLAVAMQQGHDRVVAVLLE-----NDTKGKVKL--PALHIAAKKDDCKAAALLLEN 79
             +  ++ A   G       L E      ++  K  +    L     +   K +  L+  
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 80  DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMV 139
                 ++    T        G  +I                                + 
Sbjct: 65  GADIKSRTKEGTTLFFPLFQGGGNDITG---------------------------TTELC 97

Query: 140 ELLISKGANIEAKTRDGLTPLHCAARSGHDNVID-------ILIEKGAALYSKTKAGFTP 192
           ++ + KGA+I A  +     +     +   +  +       I  + G  L  K K G T 
Sbjct: 98  KIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTA 157

Query: 193 LHIASHFGQLNMVRYLVENGANVNATTN 220
           L       +   ++ + +     N   N
Sbjct: 158 LEFVKRCQKPIALKMMEDYIKKYNLKEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  108 bits (272), Expect = 6e-29
 Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 9/136 (6%)

Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGA---ALYSKTKAGFTPLHIASHFGQLNMVRY 207
           +        +  AA  G       L EKG        K+   +  L   +   +  +  +
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMF 60

Query: 208 LVENGANVNATTNLGYTPLHQASQQGR------VLIIDLLLGAGAQPNATTNHGQTALNI 261
           L+  GA++ + T  G T      Q G         +  + L  GA   A     +  +  
Sbjct: 61  LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFK 120

Query: 262 AQKLGYISVIETLKIV 277
                ++   E + + 
Sbjct: 121 NIFNYFVDENEMIPLY 136

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 77.4 bits (191), Expect = 2e-17
 Identities = 16/133 (12%), Positives = 34/133 (25%), Gaps = 17/133 (12%)

Query: 2   AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVA------VLLEN----D 51
              E    +  +L++KG +    T++G T      Q G + +        + LE      
Sbjct: 49  NNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108

Query: 52  TKGKVKLPALHIAAKKDDCKAA-------ALLLENDHSPDVKSNSHFTPLHIAAHYGNTN 104
              K     +                    +  ++     +K     T L          
Sbjct: 109 ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPI 168

Query: 105 IAELLIQKHANVN 117
             +++       N
Sbjct: 169 ALKMMEDYIKKYN 181

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  146 bits (371), Expect = 3e-44
 Identities = 41/111 (36%), Positives = 66/111 (59%)

Query: 84  DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI 143
              S    TPLH AA  G+    + L+ K A+VN ++K   TPLH+A K G   +V+LL+
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62

Query: 144 SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLH 194
           +KGA++ A+++DG TP H A ++GH  ++ +L  KGA + +++       H
Sbjct: 63  AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  142 bits (361), Expect = 8e-43
 Identities = 44/115 (38%), Positives = 67/115 (58%), Gaps = 2/115 (1%)

Query: 114 ANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVID 173
               +  K   TPLH A K G    V+ L+SKGA++ A+++DG TPLH AA++GH  ++ 
Sbjct: 2   HMWGS--KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVK 59

Query: 174 ILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQ 228
           +L+ KGA + +++K G TP H+A   G   +V+ L   GA+VNA +       H 
Sbjct: 60  LLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  136 bits (346), Expect = 2e-40
 Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 2/114 (1%)

Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV 205
           G    +K  DG TPLH AA++GH   +  L+ KGA + +++K G TPLH+A+  G   +V
Sbjct: 1   GHMWGSK--DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58

Query: 206 RYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTAL 259
           + L+  GA+VNA +  G TP H A + G   I+ LL   GA  NA +       
Sbjct: 59  KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  112 bits (283), Expect = 3e-31
 Identities = 37/102 (36%), Positives = 55/102 (53%)

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
            LH AAK    +    LL      + +S    TPLH+AA  G+  I +LL+ K A+VN +
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR 71

Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLH 161
           +K   TP H+A K G   +V+LL +KGA++ A++       H
Sbjct: 72  SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  101 bits (254), Expect = 5e-27
 Identities = 36/90 (40%), Positives = 53/90 (58%)

Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 244
            +K G TPLH A+  G    V+ L+  GA+VNA +  G TPLH A++ G   I+ LLL  
Sbjct: 5   GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64

Query: 245 GAQPNATTNHGQTALNIAQKLGYISVIETL 274
           GA  NA +  G T  ++A+K G+  +++ L
Sbjct: 65  GADVNARSKDGNTPEHLAKKNGHHEIVKLL 94

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 51.2 bits (124), Expect = 1e-08
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
           +AA+  H  +V+ LL+KG +    ++DG TP  +A + GH  +V +L       + +   
Sbjct: 48  LAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWG 107

Query: 57  KLPALH 62
                H
Sbjct: 108 SSHHHH 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  144 bits (367), Expect = 1e-43
 Identities = 30/114 (26%), Positives = 50/114 (43%)

Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
                A K G +  V+  ++KG ++      G  PLH AA  G   +++ L+ KGA + +
Sbjct: 9   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68

Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII 238
             K   TPL  A + G ++ V+ L+  GA+       G T       Q    ++
Sbjct: 69  PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  138 bits (351), Expect = 3e-41
 Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 4/119 (3%)

Query: 92  TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
                A   G+ +  +  + K  +VN   +    PLH A   G++ ++E L+ KGA+I A
Sbjct: 9   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68

Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
             +  +TPL  A   GH + + +L+ KGA    K   G T      +      ++ L++
Sbjct: 69  PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA----IKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  138 bits (350), Expect = 4e-41
 Identities = 31/118 (26%), Positives = 51/118 (43%)

Query: 155 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
                   A ++G  + +   + KG  +    + G  PLH A+  GQL ++ +L+  GA+
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65

Query: 215 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIE 272
           +NA      TPL  A  +G V  + LLL  GA        G TA          ++++
Sbjct: 66  INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  125 bits (318), Expect = 3e-36
 Identities = 36/113 (31%), Positives = 48/113 (42%)

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
               A K  D       +      +        PLH AA  G   I E L+ K A++N  
Sbjct: 10  EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 69

Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVI 172
            KH+ITPL  A   G V+ V+LL+SKGA+   K  DGLT            ++
Sbjct: 70  DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  101 bits (254), Expect = 7e-27
 Identities = 29/86 (33%), Positives = 41/86 (47%)

Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248
                  A   G L+ V+  V  G +VN T   G  PLH A+  G++ I++ LL  GA  
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 66

Query: 249 NATTNHGQTALNIAQKLGYISVIETL 274
           NA   H  T L  A   G++S ++ L
Sbjct: 67  NAPDKHHITPLLSAVYEGHVSCVKLL 92

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 55.9 bits (136), Expect = 4e-10
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 2   AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKVK 57
           AA      ++ +LL KG +     +   TPL  A+ +GH   V +LL        KG   
Sbjct: 47  AADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 106

Query: 58  LPALHIAAKKD 68
           L A      + 
Sbjct: 107 LTAFEATDNQA 117

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 53.9 bits (131), Expect = 2e-09
 Identities = 14/44 (31%), Positives = 20/44 (45%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVV 44
            A  E H   V+ LLSKG ++T+   DG T       Q    ++
Sbjct: 79  SAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 52.8 bits (128), Expect = 5e-09
 Identities = 11/55 (20%), Positives = 22/55 (40%)

Query: 220 NLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           ++       A + G +  +   +  G   N T   G+  L+ A   G + ++E L
Sbjct: 5   SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFL 59

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  149 bits (377), Expect = 2e-43
 Identities = 53/269 (19%), Positives = 94/269 (34%), Gaps = 65/269 (24%)

Query: 5   ENHDGVVRYLLSKGGN----QTLATEDGFTPLAVAM---QQGHDRVVAVLLENDTKGKVK 57
           +  + ++ +L          +    E G T L  AM     G +  +A+LL+        
Sbjct: 27  QELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLD-------- 78

Query: 58  LPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN 117
                +A K D  K        D           T LHIA    N  +  LL++  A+V 
Sbjct: 79  -----VARKTDSLKQFVNASYTD-----SYYKGQTALHIAIERRNMTLVTLLVENGADVQ 128

Query: 118 NQAKHNI--------------TPLHVACKWGKVAMVELLISKG---ANIEAKTRDGLTPL 160
             A  +                PL +A    ++A+V+ L+      A+I A+   G T L
Sbjct: 129 AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVL 188

Query: 161 HCAARSGHDNV---------IDILIEKGAALYS-------KTKAGFTPLHIASHFGQLNM 204
           H       + V          + ++  GA L+          + G TPL +A+  G++ +
Sbjct: 189 HALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGV 248

Query: 205 VRYLVENGANVNATTNLGYTPLHQASQQG 233
           + Y+++   +            H A+   
Sbjct: 249 LAYILQREIH-------EPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  137 bits (348), Expect = 5e-39
 Identities = 47/256 (18%), Positives = 85/256 (33%), Gaps = 60/256 (23%)

Query: 60  ALHIAAKKDDCKAAALLLE-----NDHSPDV---KSNSHFTPLHIA---AHYGNTNIAEL 108
           ++  A  + +C+    LL           D       +  T L  A    H G  +   L
Sbjct: 16  SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIAL 75

Query: 109 LIQK-----------HANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGL 157
           L+             +A+  +      T LH+A +   + +V LL+  GA+++A      
Sbjct: 76  LLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF 135

Query: 158 TPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENG---AN 214
                     +                    G  PL +A+   QL +V++L++N    A+
Sbjct: 136 FKKTKGRPGFYF-------------------GELPLSLAACTNQLAIVKFLLQNSWQPAD 176

Query: 215 VNATTNLGYTPLHQASQQGRVLIID----------------LLLGAGAQPNATTNHGQTA 258
           ++A  ++G T LH   +     + +                 L         T   G T 
Sbjct: 177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTP 236

Query: 259 LNIAQKLGYISVIETL 274
           L +A   G I V+  +
Sbjct: 237 LALAASSGKIGVLAYI 252

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  125 bits (316), Expect = 2e-34
 Identities = 43/200 (21%), Positives = 69/200 (34%), Gaps = 39/200 (19%)

Query: 114 ANVNNQAKHNITPLHVACKWGKVAMVELL-------ISKGANIEAKTRD-GLTPLHCA-- 163
           A       ++   +  A        +E L         +  + E K  + G T L  A  
Sbjct: 4   AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAML 63

Query: 164 -ARSGHDNVIDILIEKGAALY-----------SKTKAGFTPLHIASHFGQLNMVRYLVEN 211
              +G ++ I +L++                      G T LHIA     + +V  LVEN
Sbjct: 64  NLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN 123

Query: 212 GANVNATTN--------------LGYTPLHQASQQGRVLIIDLLLGAG---AQPNATTNH 254
           GA+V A  N               G  PL  A+   ++ I+  LL      A  +A  + 
Sbjct: 124 GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSV 183

Query: 255 GQTALNIAQKLGYISVIETL 274
           G T L+   ++   +V  T 
Sbjct: 184 GNTVLHALVEVADNTVDNTK 203

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  106 bits (266), Expect = 4e-27
 Identities = 35/222 (15%), Positives = 61/222 (27%), Gaps = 74/222 (33%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           +A +  +  +V  L+  G +   A    F          +                    
Sbjct: 107 IAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFG------------------ 148

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQK---HANVN 117
                                           PL +AA      I + L+Q     A+++
Sbjct: 149 ------------------------------ELPLSLAACTNQLAIVKFLLQNSWQPADIS 178

Query: 118 NQAKHNITPLHVACKWGK---------VAMVELLISKGANI-------EAKTRDGLTPLH 161
            +     T LH   +             +M   ++  GA +       E   R GLTPL 
Sbjct: 179 ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLA 238

Query: 162 CAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLN 203
            AA SG   V+  ++++               H A+H    +
Sbjct: 239 LAASSGKIGVLAYILQREI-------HEPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 84.8 bits (210), Expect = 3e-19
 Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 36/167 (21%)

Query: 144 SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE-------KGAAL-YSKTKAGFTPLHI 195
           S  A  +         +  A    +   ++ L+        +     +   + G T L  
Sbjct: 1   SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60

Query: 196 AS---HFGQLNMVRYLVENGANVNATTNL-----------GYTPLHQASQQGRVLIIDLL 241
           A    H GQ + +  L++     ++               G T LH A ++  + ++ LL
Sbjct: 61  AMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLL 120

Query: 242 LGAGAQPNATTN--------------HGQTALNIAQKLGYISVIETL 274
           +  GA   A  N               G+  L++A     +++++ L
Sbjct: 121 VENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  144 bits (366), Expect = 3e-43
 Identities = 39/132 (29%), Positives = 73/132 (55%), Gaps = 1/132 (0%)

Query: 112 KHANVNNQAKHNI-TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDN 170
           + ++ ++    ++   L  A + G+   V +L++ GA++ AK   GLTPL+ A   GH  
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLE 61

Query: 171 VIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQAS 230
           ++++L++ GA + +    GFTPLH+A+  G L +   L+++GA+VNA    G T    + 
Sbjct: 62  IVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISI 121

Query: 231 QQGRVLIIDLLL 242
             G   + ++L 
Sbjct: 122 GNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  139 bits (353), Expect = 2e-41
 Identities = 37/119 (31%), Positives = 65/119 (54%)

Query: 92  TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
             L  AA  G  +   +L+   A+VN + ++ +TPL++A   G + +VE+L+  GA++ A
Sbjct: 16  KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA 75

Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
               G TPLH AA  GH  + ++L++ GA + ++ K G T   I+   G  ++   L +
Sbjct: 76  VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  129 bits (327), Expect = 2e-37
 Identities = 48/135 (35%), Positives = 75/135 (55%), Gaps = 7/135 (5%)

Query: 140 ELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHF 199
                 G+++          L  AAR+G D+ + IL+  GA + +K + G TPL++A+  
Sbjct: 5   HHHHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH 57

Query: 200 GQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTAL 259
           G L +V  L++NGA+VNA   +G+TPLH A+  G + I ++LL  GA  NA    G+TA 
Sbjct: 58  GHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117

Query: 260 NIAQKLGYISVIETL 274
           +I+   G   + E L
Sbjct: 118 DISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  125 bits (317), Expect = 5e-36
 Identities = 33/118 (27%), Positives = 62/118 (52%)

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
            L  AA+        +L+ N    + K     TPL++A  +G+  I E+L++  A+VN  
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76

Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
                TPLH+A   G + + E+L+  GA++ A+ + G T    +  +G++++ +IL +
Sbjct: 77  DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 80.5 bits (200), Expect = 7e-19
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 4/117 (3%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
            AA+   D  VR L++ G +     E G TPL +A   GH  +V VLL+N    +    +
Sbjct: 20  EAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAI 79

Query: 57  KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKH 113
               LH+AA     + A +LL++    + +     T   I+   GN ++AE+L + +
Sbjct: 80  GFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  144 bits (366), Expect = 6e-42
 Identities = 45/254 (17%), Positives = 87/254 (34%), Gaps = 52/254 (20%)

Query: 2   AAQENHDGVVRYLLSKGGN----QTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVK 57
            + +  +G++ +LL+        +      G T L  A+             N + G+  
Sbjct: 16  GSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALL------------NLSAGRND 63

Query: 58  LPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN 117
              + +   +        +               T LHIA      +  ELL++K A+V+
Sbjct: 64  TIPILLDIAEKTGNMREFINSPFRDVY---YRGQTALHIAIERRCKHYVELLVEKGADVH 120

Query: 118 NQAKHNI--------------TPLHVACKWGKVAMVELLISKG---ANIEAKTRDGLTPL 160
            QA+                  PL +A    +  +V  L   G   A++  +   G T L
Sbjct: 121 AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL 180

Query: 161 HCAARSGHDN---------VIDILIEKGAALYSKT-------KAGFTPLHIASHFGQLNM 204
           H       +          + D+L+ K A L+  T         G +PL +A+  G++ +
Sbjct: 181 HALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGI 240

Query: 205 VRYLVENGANVNAT 218
            ++++       A 
Sbjct: 241 FQHIIRREIADAAA 254

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  130 bits (328), Expect = 3e-36
 Identities = 47/238 (19%), Positives = 83/238 (34%), Gaps = 55/238 (23%)

Query: 92  TPLHIAAHYGNTN----IAELLIQKHANVNN----QAKHNITPLHVA---CKWGKVAMVE 140
             L      G+ +    +   L+     + +    +     T L  A      G+   + 
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 141 LLISKG-----------ANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKA- 188
           +L+              +        G T LH A      + +++L+EKGA ++++ +  
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126

Query: 189 -------------GFTPLHIASHFGQLNMVRYLVENG---ANVNATTNLGYTPLHQASQQ 232
                        G  PL +A+   Q ++V YL ENG   A++    + G T LH     
Sbjct: 127 FFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAI 186

Query: 233 G---------RVLIIDLLLGAGAQPNATT-------NHGQTALNIAQKLGYISVIETL 274
                        + DLLL   A+    T       N G + L +A K G I + + +
Sbjct: 187 ADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  108 bits (272), Expect = 3e-28
 Identities = 37/179 (20%), Positives = 56/179 (31%), Gaps = 39/179 (21%)

Query: 123 NITPLHVACKWGKVA----MVELLISKGANIEAK----TRDGLTPLHCAA---RSGHDNV 171
           N   L      G       ++  L++    +  +       G T L  A     +G ++ 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 172 IDILIEKGAALY-----------SKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTN 220
           I IL++                      G T LHIA      + V  LVE GA+V+A   
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 221 --------------LGYTPLHQASQQGRVLIIDLLLGAG---AQPNATTNHGQTALNIA 262
                          G  PL  A+   +  I+  L   G   A      + G T L+  
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHAL 183

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 80.2 bits (198), Expect = 1e-17
 Identities = 31/163 (19%), Positives = 51/163 (31%), Gaps = 43/163 (26%)

Query: 1   MAAQENHDGVVRYLLSKGGN--------------QTLATEDGFTPLAVAMQQGHDRVVAV 46
           +A +      V  L+ KG +              +      G  PL++A       +V  
Sbjct: 99  IAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY 158

Query: 47  LLEN----------DTKGKVKLPALHIAA---------KKDDCKAAALLLEND------- 80
           L EN          D++G      LH             K   K   LLL          
Sbjct: 159 LTENGHKQADLRRQDSRGNT---VLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT 215

Query: 81  HSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHN 123
           +   + +N   +PL +AA  G   I + +I++         H+
Sbjct: 216 NLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHH 258

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  137 bits (346), Expect = 3e-38
 Identities = 36/234 (15%), Positives = 72/234 (30%), Gaps = 21/234 (8%)

Query: 50  NDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSH-FTPLHIAAHYGNTNIAEL 108
           N   G       H++      +          + ++  + H  TPLH      N  + + 
Sbjct: 90  NSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKH 149

Query: 109 LIQKHANVNNQAKHNITPLHVACKWG----KVAMVELLISKGANIEAKTRDGLTPLHCAA 164
           L++  +N         + L  A K            LL      +  +     T LH   
Sbjct: 150 LVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHII 209

Query: 165 ------------RSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN- 211
                       +   D ++  +++K                   +  + + +   ++  
Sbjct: 210 ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK 269

Query: 212 ---GANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
                 +NA  + G T L+ A++ G + I+D LL  GA P      G   ++  
Sbjct: 270 WIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  125 bits (316), Expect = 5e-34
 Identities = 40/238 (16%), Positives = 79/238 (33%), Gaps = 22/238 (9%)

Query: 59  PALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPL-HIAAHYGNTNIAELLIQKHANVN 117
             L      +  +    L  +  + + +  S      H++       + +       N+N
Sbjct: 65  AFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLN 124

Query: 118 NQA-KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGH----DNVI 172
               +H  TPLH       + +V+ L+  G+N       G + L  A +S +        
Sbjct: 125 IPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFE 184

Query: 173 DILIEKGAALYSKTKAGFTPLHIA------------SHFGQLNMVRYLVENGANVNATTN 220
            +L      L  +     T LH              + +    ++ ++V+       +  
Sbjct: 185 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT 244

Query: 221 LGYTPLHQA----SQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
                         +   +  +DL        NA  ++G T LNIA +LG IS+++ L
Sbjct: 245 NEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 302

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  117 bits (293), Expect = 1e-30
 Identities = 34/259 (13%), Positives = 69/259 (26%), Gaps = 32/259 (12%)

Query: 2   AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN---------DT 52
                   +   L +   N+                    + V     N         D 
Sbjct: 70  LLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDE 129

Query: 53  KGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNT----NIAEL 108
            G      LH      + +    L+++  +     N   + L  A    N         L
Sbjct: 130 HGNT---PLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEAL 186

Query: 109 LIQKHANVNNQAKHNITPLHVACKWGKV------------AMVELLISKGANIEAKTRDG 156
           L   +  +  +   N T LH       +             ++  ++ K         + 
Sbjct: 187 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNE 246

Query: 157 LTPLHCAARSGHDN----VIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENG 212
                        +     +D+       L ++   G T L+IA+  G +++V  L++ G
Sbjct: 247 KESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG 306

Query: 213 ANVNATTNLGYTPLHQASQ 231
           A+       G  P+   + 
Sbjct: 307 ADPFIANKSGLRPVDFGAG 325

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  100 bits (250), Expect = 1e-24
 Identities = 37/221 (16%), Positives = 73/221 (33%), Gaps = 25/221 (11%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLAT-EDGFTPLAVAMQQGHDRVVAVLLEN----DTKGK 55
           ++       V     +   N  +   E G TPL       +  +V  L+++         
Sbjct: 103 VSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN 162

Query: 56  VKLPALHIAAKKDDCK----AAALLLENDHSPDVKSNSHFTPLHIAA------------H 99
           +    L  A K  +        ALL        ++ + + T LH                
Sbjct: 163 MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAK 222

Query: 100 YGNTNIAELLIQKHANVNNQAKHNITPLHVA----CKWGKVAMVELLISKGANIEAKTRD 155
           Y    +   +++K         +             K   +  ++L       + A+  +
Sbjct: 223 YYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN 282

Query: 156 GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIA 196
           G T L+ AAR G+ +++D L++ GA  +   K+G  P+   
Sbjct: 283 GDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  123 bits (311), Expect = 1e-35
 Identities = 41/90 (45%), Positives = 64/90 (71%)

Query: 91  FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
            TPLH+AA  G+  + +LL++  A+VN + K+  TPLH+A + G + +V+LL+  GA++ 
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
           AK ++G TPLH AAR+GH  V+ +L+E GA
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  119 bits (301), Expect = 3e-34
 Identities = 43/89 (48%), Positives = 64/89 (71%)

Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
           TPLH+A + G + +V+LL+  GA++ AK ++G TPLH AAR+GH  V+ +L+E GA + +
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGA 213
           K K G TPLH+A+  G L +V+ L+E GA
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  117 bits (295), Expect = 3e-33
 Identities = 46/92 (50%), Positives = 64/92 (69%)

Query: 155 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
           +G TPLH AAR+GH  V+ +L+E GA + +K K G TPLH+A+  G L +V+ L+E GA+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 215 VNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 246
           VNA    G TPLH A++ G + ++ LLL AGA
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  102 bits (256), Expect = 1e-27
 Identities = 38/86 (44%), Positives = 58/86 (67%)

Query: 189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248
           G TPLH+A+  G L +V+ L+E GA+VNA    G TPLH A++ G + ++ LLL AGA  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 249 NATTNHGQTALNIAQKLGYISVIETL 274
           NA   +G+T L++A + G++ V++ L
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 67.8 bits (167), Expect = 9e-15
 Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 29/114 (25%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           +AA+  H  VV+ LL  G +     ++G TPL +A + GH  VV +LLE           
Sbjct: 8   LAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG--------- 58

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHA 114
               A                  + K  +  TPLH+AA  G+  + +LL++  A
Sbjct: 59  ----ADV----------------NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  130 bits (329), Expect = 2e-35
 Identities = 37/298 (12%), Positives = 75/298 (25%), Gaps = 54/298 (18%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           +    +    +  LL+      +   + +    +A + GH  V+  L E           
Sbjct: 101 ITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELA--------- 151

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV---N 117
                                   +    ++    +AA  G+ ++   L +         
Sbjct: 152 ------------------PTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAM 193

Query: 118 NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
            QA++       A   G   ++  L+     +                      ++ L E
Sbjct: 194 IQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKE 253

Query: 178 KGAALY-------------SKTKAGFTPLHIAS---HFGQLNMVRYL-----VENGANVN 216
              A               S+   GF  L           L+ +R+L     ++  A   
Sbjct: 254 MHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTA 313

Query: 217 ATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
                    L  A + G      LLL   +    T  +      I +  G + +    
Sbjct: 314 TIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANN---YYINETGGRLDLRAVA 368

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  119 bits (299), Expect = 4e-31
 Identities = 32/247 (12%), Positives = 72/247 (29%), Gaps = 21/247 (8%)

Query: 36  MQQGHDRVVAVLLE--NDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTP 93
           M   +   + + L    + +   +L  L+ A    + K    L  + H   +KS      
Sbjct: 42  MTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAK---QLWSDAHKKGIKSEVICFV 98

Query: 94  LHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA-- 151
             I       +   LL+     V      N     +A + G + ++  L           
Sbjct: 99  AAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM 158

Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT--KAGFTPLHIAS-HFGQLNMVRYL 208
              +       AA +GH +V++ L E      +       +     A+   G  N++ +L
Sbjct: 159 IQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFL 218

Query: 209 VENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYI 268
           ++    +       +    +         ++ L                A  ++   G  
Sbjct: 219 LDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRL-----------KEMHDAFKLSNPDGVF 267

Query: 269 SVIETLK 275
            ++   +
Sbjct: 268 DLVTKSE 274

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  107 bits (269), Expect = 6e-27
 Identities = 36/251 (14%), Positives = 69/251 (27%), Gaps = 43/251 (17%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLA--TEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKL 58
           +AA+  H  V+  L      + +A    + +    +A + GH  V+  L E        +
Sbjct: 134 LAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAM 193

Query: 59  P------ALHIAAKK---------------DDCKAAALLLENDHSPDVK----SNSHFTP 93
                  A   AA                     A     E              +    
Sbjct: 194 IQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKE 253

Query: 94  LHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELL--------ISK 145
           +H A    N +    L+ K      +       L    +     +++ +        I  
Sbjct: 254 MHDAFKLSNPDGVFDLVTKS-----ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKA 308

Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV 205
            A       D    L  A R G+     +L+   + L           +I    G+L++ 
Sbjct: 309 LAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKA---NNYYINETGGRLDLR 365

Query: 206 RYLVENGANVN 216
              +E+  + +
Sbjct: 366 AVALEHHHHHH 376

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  121 bits (305), Expect = 1e-34
 Identities = 31/112 (27%), Positives = 61/112 (54%), Gaps = 3/112 (2%)

Query: 97  AAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG 156
            + + + + +  L+ + +++ +        L  A + G+   V +L++ GA++ AK ++G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSDLG---KKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
            TPLH AAR+GH  V+ +L+E GA + ++ K G T   I+   G  ++   L
Sbjct: 58  STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  119 bits (300), Expect = 7e-34
 Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 3/112 (2%)

Query: 130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAG 189
                       L+ +G+++ +   D    L  AAR+G D+ + IL+  GA + +K K G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 190 FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 241
            TPLH+A+  G L +V+ L+E GA+V A    G T    +   G   + ++L
Sbjct: 58  STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  109 bits (275), Expect = 4e-30
 Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 3/113 (2%)

Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLG 222
            +   H +    L+ +G+ + S        L  A+  GQ + VR L+ NGA+V A    G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 223 YTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLK 275
            TPLH A++ G + ++ LLL AGA   A    G+TA +I+   G   + E L+
Sbjct: 58  STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 99.2 bits (248), Expect = 3e-26
 Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 3/112 (2%)

Query: 64  AAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHN 123
            +       ++ L+       + S+     L  AA  G  +   +L+   A+V  + K+ 
Sbjct: 1   GSSHHHHHHSSGLVP--RGSHMGSDL-GKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 124 ITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
            TPLH+A + G + +V+LL+  GA++ A+ + G T    +  +G++++ +IL
Sbjct: 58  STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 83.8 bits (208), Expect = 2e-20
 Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 32/141 (22%)

Query: 2   AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
            +  +H      L+ +G +      D    L  A + G D  V +L+ N           
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANG---------- 47

Query: 62  HIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAK 121
              A                    K  +  TPLH+AA  G+  + +LL++  A+V  Q K
Sbjct: 48  ---ADVA----------------AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK 88

Query: 122 HNITPLHVACKWGKVAMVELL 142
              T   ++   G   + E+L
Sbjct: 89  FGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 53.7 bits (130), Expect = 2e-09
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
            AA+   D  VR L++ G +     ++G TPL +A + GH  VV +LLE       + K 
Sbjct: 30  EAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKF 89

Query: 57  KLPALHIAAKKDDCKAAALL 76
              A  I+    +   A +L
Sbjct: 90  GKTAFDISIDNGNEDLAEIL 109

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 85.0 bits (210), Expect = 2e-19
 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 3/111 (2%)

Query: 70  CKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTN---IAELLIQKHANVNNQAKHNITP 126
             A  + L              T LH+A    +     I + L+Q   N++ Q     T 
Sbjct: 149 AYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTA 208

Query: 127 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
           LH  C       ++LL+   A+IE     G TPL  A R  H++  ++L +
Sbjct: 209 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 78.5 bits (193), Expect = 6e-17
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 189 GFTPLHIASHFGQLN---MVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 245
             T LH+A          +V +LV+N  N++  T  G T LH          + LLL   
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK 228

Query: 246 AQPNATTNHGQTALNIAQKLGYISVIETL 274
           A        G+T L+IA++L +    E L
Sbjct: 229 ASIEIANESGETPLDIAKRLKHEHCEELL 257

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 75.4 bits (185), Expect = 6e-16
 Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 10/141 (7%)

Query: 77  LENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGK- 135
             +     VK+   F  L   A   +         +   + N  + + T LH+A +    
Sbjct: 130 KLHSLCEAVKTRDIFGLLQAYADGVDLT-------EKIPLANGHEPDETALHLAVRSVDR 182

Query: 136 --VAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPL 193
             + +V+ L+    N++ +T  G T LH    + +   + +L+   A++    ++G TPL
Sbjct: 183 TSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPL 242

Query: 194 HIASHFGQLNMVRYLVENGAN 214
            IA      +    L +  + 
Sbjct: 243 DIAKRLKHEHCEELLTQALSG 263

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 75.4 bits (185), Expect = 8e-16
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 153 TRDGLTPLHCAARSGHDN---VIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLV 209
                T LH A RS       ++D L++    L  +T  G T LH          ++ L+
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225

Query: 210 ENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 244
              A++      G TPL  A +       +LL  A
Sbjct: 226 RGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 63.5 bits (154), Expect = 1e-11
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 60  ALHIAAKKDD---CKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
           ALH+A +  D         L++N  + D ++    T LH      N    +LL++  A++
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI 231

Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGAN 148
               +   TPL +A +       ELL    + 
Sbjct: 232 EIANESGETPLDIAKRLKHEHCEELLTQALSG 263

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 55.0 bits (132), Expect = 5e-09
 Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 13/127 (10%)

Query: 15  LSKGGNQTLATEDGFTPLAVAMQQGHDRVVAV---LLENDTKGKVKLP----ALHIAAKK 67
           L++        E   T L +A++      + +   L++N      +      ALH     
Sbjct: 156 LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT 215

Query: 68  DDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPL 127
           D+ +   LLL    S ++ + S  TPL IA    + +  ELL Q  +   N        +
Sbjct: 216 DNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNS------HV 269

Query: 128 HVACKWG 134
           HV  +W 
Sbjct: 270 HVEYEWR 276

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 2   AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLE 49
               ++   ++ LL    +  +A E G TPL +A +  H+    +L +
Sbjct: 212 CCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 82.7 bits (204), Expect = 2e-18
 Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 3/111 (2%)

Query: 70  CKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTN---IAELLIQKHANVNNQAKHNITP 126
             A                     LH+A    N     + + +IQ   +++ +A    T 
Sbjct: 170 AFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 229

Query: 127 LHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
           LH A  + +   ++LL+   A +      G T L  A +  H    ++L +
Sbjct: 230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 79.3 bits (195), Expect = 4e-17
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 189 GFTPLHIASHFG---QLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 245
               LH+A        L +V ++++NG +++A    G T LH A+   +   + LLL   
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249

Query: 246 AQPNATTNHGQTALNIAQKLGYISVIETL 274
           A        G+TAL+IA+K  +    E L
Sbjct: 250 ALVGTVNEAGETALDIARKKHHKE-CEEL 277

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 74.3 bits (182), Expect = 2e-15
 Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 12/140 (8%)

Query: 62  HIAAKKDDCKAAALLLENDHSP--DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
           +I AK  + + A             + +    + L   A+  +         +     + 
Sbjct: 134 YIMAKYVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFG-------QPLPGPDA 186

Query: 120 AKHNITPLHVACKWGK---VAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
                  LH+A K      + +V+ +I  G +++AK  DG T LH AA     + + +L+
Sbjct: 187 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 246

Query: 177 EKGAALYSKTKAGFTPLHIA 196
           +  A + +  +AG T L IA
Sbjct: 247 KGRALVGTVNEAGETALDIA 266

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 71.6 bits (175), Expect = 2e-14
 Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 9/145 (6%)

Query: 128 HVACKWGKVAMVELLISKGANIEAKTR------DGLTPLHCAARSGHDN---VIDILIEK 178
             A     +  V    + G +                 LH A +  +     ++D +I+ 
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215

Query: 179 GAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII 238
           G  L +K   G T LH A+ + Q + ++ L++  A V      G T L  A ++      
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE 275

Query: 239 DLLLGAGAQPNATTNHGQTALNIAQ 263
           +LL  A A   A   H   +  I+ 
Sbjct: 276 ELLEQAQAGTFAFPLHVDYSWVIST 300

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 59.2 bits (143), Expect = 3e-10
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 9/105 (8%)

Query: 60  ALHIAAKKDDCK---AAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
            LH+A K  +         +++N    D K+    T LH AA Y   +  +LL++  A V
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 252

Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLH 161
               +   T L +A K       ELL       +A+      PLH
Sbjct: 253 GTVNEAGETALDIARKKHHKECEELL------EQAQAGTFAFPLH 291

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 42.3 bits (99), Expect = 9e-05
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
            AA  N    ++ LL          E G T L +A ++ H      LLE    G    P 
Sbjct: 232 YAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEE-LLEQAQAGTFAFP- 289

Query: 61  LHI 63
           LH+
Sbjct: 290 LHV 292

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 26/133 (19%), Positives = 39/133 (29%), Gaps = 35/133 (26%)

Query: 2   AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
            A +    +V +++  GG+      DG T L  A        + +LL+            
Sbjct: 200 VANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG----------- 248

Query: 62  HIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAK 121
                    +A              + +  T L IA    +    ELL Q  A       
Sbjct: 249 ---------RA---------LVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAF-- 288

Query: 122 HNITPLHVACKWG 134
               PLHV   W 
Sbjct: 289 ----PLHVDYSWV 297

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 81.4 bits (200), Expect = 2e-17
 Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 2/123 (1%)

Query: 155 DGLTPLHCAARSGHDNVIDILIEKGAALYSKT--KAGFTPLHIASHFGQLNMVRYLVENG 212
            G      +        +   +  GA +      +   TPL  A+    L    +L++NG
Sbjct: 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNG 258

Query: 213 ANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIE 272
           ANVN   + G  PLH A+  G   +  L L  GA   A  + G+  L IA +     ++ 
Sbjct: 259 ANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVT 318

Query: 273 TLK 275
            L+
Sbjct: 319 LLR 321

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 78.3 bits (192), Expect = 2e-16
 Identities = 25/84 (29%), Positives = 40/84 (47%)

Query: 92  TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
           TPL  A    +    E L+Q  ANVN        PLH A   G   +  L + +GA++ A
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296

Query: 152 KTRDGLTPLHCAARSGHDNVIDIL 175
           +  +G  PL  A  + + +++ +L
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLL 320

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 73.3 bits (179), Expect = 7e-15
 Identities = 33/166 (19%), Positives = 55/166 (33%)

Query: 49  ENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAEL 108
               +G+  +P       +     +     ++    +   +             T    L
Sbjct: 161 RGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADAL 220

Query: 109 LIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGH 168
                 N  N  + N TPL  A     +   E L+  GAN+      G  PLH A   GH
Sbjct: 221 AHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGH 280

Query: 169 DNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
             +  + +++GA L ++   G  PL IA      ++V  L      
Sbjct: 281 TGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR 326

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 69.4 bits (169), Expect = 2e-13
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 2/116 (1%)

Query: 141 LLISKGANIEAKT--RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASH 198
             ++ GA++      +D  TPL  A  +      + L++ GA +     AG  PLH A+ 
Sbjct: 218 DALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI 277

Query: 199 FGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNH 254
            G   +    ++ GA++ A  + G  PL  A +     I+ LL  A  +       
Sbjct: 278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQG 333

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 50.2 bits (119), Expect = 3e-07
 Identities = 26/111 (23%), Positives = 35/111 (31%), Gaps = 10/111 (9%)

Query: 20  NQTLATEDGFTPLAVAMQQGHDRVVAVLLEN-------DTKGKVKLPALHIAAKKDDCKA 72
           N     +D  TPL  A           LL+N       D+ G+     LH A        
Sbjct: 227 NWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGR---GPLHHATILGHTGL 283

Query: 73  AALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHN 123
           A L L+       + +    PL IA    N +I  LL          A+  
Sbjct: 284 ACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQ 334

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 12/52 (23%), Positives = 22/52 (42%)

Query: 2   AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK 53
           A    H G+    L +G +      +G  PL +AM+  +  +V +L     +
Sbjct: 275 ATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR 326

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 73.0 bits (179), Expect = 2e-14
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 3/92 (3%)

Query: 187 KAGFTPLHIA---SHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
                 LH+A   ++   L +V ++++NG +++A    G T LH A+   +   + LLL 
Sbjct: 169 APEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK 228

Query: 244 AGAQPNATTNHGQTALNIAQKLGYISVIETLK 275
             A        G+TAL+IA+K  +    E L+
Sbjct: 229 GRALVGTVNEAGETALDIARKKHHKECEELLE 260

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 70.7 bits (173), Expect = 8e-14
 Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 11/125 (8%)

Query: 61  LHIAAKKDDCKAAALLL-------ENDHSPDVKSNSHFTPLHIA---AHYGNTNIAELLI 110
           L  A    D  +            +    PD ++      LH+A   A+  +  + + +I
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEE-LVLHLAVKVANQASLPLVDFII 194

Query: 111 QKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDN 170
           Q   +++ +A    T LH A  + +   ++LL+   A +      G T L  A +  H  
Sbjct: 195 QNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKE 254

Query: 171 VIDIL 175
             ++L
Sbjct: 255 CEELL 259

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 46/350 (13%), Positives = 89/350 (25%), Gaps = 122/350 (34%)

Query: 21  QTLATEDGFT-PLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLEN 79
           + L T    T    V           + L++ +          +  K  DC+   L    
Sbjct: 267 KILLT----TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---- 318

Query: 80  DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKH----------------- 122
               +V + +   P  ++       IAE + +      +  KH                 
Sbjct: 319 --PREVLTTN---PRRLSI------IAESI-RDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 123 -------------------NITPLHVACK-WGKVA------MVELLISKGANIEAKTRDG 156
                              +I P  +    W  V       +V  L      +E + ++ 
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHI-PTILLSLIWFDVIKSDVMVVVNKLHKYSL-VEKQPKES 424

Query: 157 LTPLH---CAARSGHDNVIDI---LIEKGAALYSKTKA----GFTPL--------HIASH 198
              +       +   +N   +   +++     Y+  K        P         HI  H
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDH----YNIPKTFDSDDLIPPYLDQYFYSHIGHH 480

Query: 199 FGQLNMVR--------YL----VEN-----GANVNATTNL-----------GYTPLHQAS 230
              +            +L    +E          NA+ ++            Y   +   
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540

Query: 231 QQGRV-LIIDLLLGAGAQPNAT--TNHGQTALNIAQKLGYISVIETLKIV 277
            +  V  I+D L         +  T+  + AL    +   I   E  K V
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLRIALM--AEDEAI-FEEAHKQV 587

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	318
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.91
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.9
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.89
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.89
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.88
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.88
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.87
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.84
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.84
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.78
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	86.63

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=6.1e-53  Score=364.51  Aligned_cols=307  Identities=42%  Similarity=0.689  Sum_probs=203.2

Q ss_pred             ccccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHHH
Q psy4998           2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALLL   77 (318)
Q Consensus         2 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~ll   77 (318)
                      |++.|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|++.+..    +..+.||||+|+..|+.+++++|+
T Consensus        87 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  166 (437)
T 1n11_A           87 AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL  166 (437)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            6666777777777777777666666666666666666666666666665432    333445555555555555555555


Q ss_pred             hCCCCCCCCCCCCc---------------------------------hHHHHHHHcCCHHHHHHHHhccCCcccccCCCC
Q psy4998          78 ENDHSPDVKSNSHF---------------------------------TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNI  124 (318)
Q Consensus        78 ~~~~~~~~~~~~~~---------------------------------~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~  124 (318)
                      ++|.+++..+..|.                                 ||||+|+..++.+++++|++.+.+++..+..|.
T Consensus       167 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~  246 (437)
T 1n11_A          167 ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGV  246 (437)
T ss_dssp             HTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence            55555555444444                                 555555555555555555555555555555566


Q ss_pred             hHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHH
Q psy4998         125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNM  204 (318)
Q Consensus       125 ~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  204 (318)
                      |||+.|+..|+.+++++|++.+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++
T Consensus       247 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~  326 (437)
T 1n11_A          247 TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKL  326 (437)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHH
T ss_pred             CHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHH
Confidence            66666666666666666666666666666677777777777777777777777777777777778888888888888888


Q ss_pred             HHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccceec
Q psy4998         205 VRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETTIVT  284 (318)
Q Consensus       205 ~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~~  284 (318)
                      +++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|.+.|+.+++++|+.......  
T Consensus       327 v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~~~~--  404 (437)
T 1n11_A          327 VKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETS--  404 (437)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCCCS--
T ss_pred             HHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcccccc--
Confidence            888888888888888888888888888888888888888888888888888888888888888888888876654322  


Q ss_pred             cchhhhccccccccccccceeeeecccc
Q psy4998         285 TTVTTIEEKYRVVAPEAMQEVYMSDSED  312 (318)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (318)
                        .....++++...++.+.+.+...+++
T Consensus       405 --~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (437)
T 1n11_A          405 --FVLVSDKHRMSFPETVDEILDVSEDE  430 (437)
T ss_dssp             --SCC----CCCCCCCCCCC--------
T ss_pred             --ccccchhcccCCccccchhhcccccc
Confidence              23355677777888888866555444

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.8e-52  Score=359.54  Aligned_cols=282  Identities=35%  Similarity=0.577  Sum_probs=236.7

Q ss_pred             CccccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHH
Q psy4998           1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALL   76 (318)
Q Consensus         1 lA~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~l   76 (318)
                      +|++.|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|++++.+    +..+.||||+|+..|+.+++++|
T Consensus        53 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~L  132 (437)
T 1n11_A           53 MAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL  132 (437)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Confidence            48999999999999999999999999999999999999999999999998764    56688999999999999999999


Q ss_pred             HhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCcc----
Q psy4998          77 LENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK----  152 (318)
Q Consensus        77 l~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~----  152 (318)
                      ++++.+.+..+..|.||||+|+..|+.+++++|++.+.+++..+..|.|||+.|+..++.+++++|++.+.+++..    
T Consensus       133 l~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  212 (437)
T 1n11_A          133 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG  212 (437)
T ss_dssp             HHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTC
T ss_pred             HhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCC
Confidence            9999999999999999999999999999999999999888777777777777777666666666666665555444    


Q ss_pred             -----------------------------CCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHH
Q psy4998         153 -----------------------------TRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLN  203 (318)
Q Consensus       153 -----------------------------~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  203 (318)
                                                   +..|.|||++|+..|+.+++++|++++++++..+..|.||||+|+..++.+
T Consensus       213 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~  292 (437)
T 1n11_A          213 YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVP  292 (437)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence                                         444555555555555666666666666666666667777777777777777


Q ss_pred             HHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccce
Q psy4998         204 MVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETTI  282 (318)
Q Consensus       204 ~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~  282 (318)
                      ++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|...+.+..
T Consensus       293 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~  371 (437)
T 1n11_A          293 VADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN  371 (437)
T ss_dssp             HHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             HHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCC
Confidence            8888888888888888889999999999999999999999999999999999999999999999999999998876543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=4.6e-49  Score=328.88  Aligned_cols=276  Identities=27%  Similarity=0.324  Sum_probs=255.0

Q ss_pred             ccccChHHHHHHHHhcCCCCCcCCC-CCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHH
Q psy4998           2 AAQENHDGVVRYLLSKGGNQTLATE-DGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALL   76 (318)
Q Consensus         2 A~~~g~~~~v~~Ll~~g~~~~~~~~-~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~l   76 (318)
                      |++.|++++|++|+++|++++.++. .|+||||+|+..|+.+++++|+++++.    +..+.++++.++..+...++..+
T Consensus        32 Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (337)
T 4g8k_A           32 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLF  111 (337)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHh
Confidence            8999999999999999999998876 599999999999999999999999765    55678999999999999999999


Q ss_pred             HhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccc----------cCCCChHHHHHHHcCcHHHHHHHHH-c
Q psy4998          77 LENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ----------AKHNITPLHVACKWGKVAMVELLIS-K  145 (318)
Q Consensus        77 l~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~~~L~~-~  145 (318)
                      +..+.+++..+..|.||+++|+..|+.++++++++.|++++..          +..|.||||+|+..|+.+++++|++ .
T Consensus       112 ~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~  191 (337)
T 4g8k_A          112 LSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM  191 (337)
T ss_dssp             HTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHS
T ss_pred             hhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999887643          3458899999999999999999996 5


Q ss_pred             CCCCCccCCCCChHHHHHHHcCC----HHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHc-CCCCCcCCC
Q psy4998         146 GANIEAKTRDGLTPLHCAARSGH----DNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN-GANVNATTN  220 (318)
Q Consensus       146 ~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~  220 (318)
                      |++++..+..|.++++.++..+.    ..++++|+++|++++.++..|.||||+|+..++.+++++|++. |++++.+|.
T Consensus       192 gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~  271 (337)
T 4g8k_A          192 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS  271 (337)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCT
T ss_pred             CCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCC
Confidence            99999999999999998876554    4688999999999999999999999999999999999999985 899999999


Q ss_pred             CCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccce
Q psy4998         221 LGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETTI  282 (318)
Q Consensus       221 ~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~  282 (318)
                      .|.||||+|++.|+.+++++|+++|++++.+     +|+++|++.|+.++|++|...+..+-
T Consensus       272 ~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d  328 (337)
T 4g8k_A          272 DGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKED  328 (337)
T ss_dssp             TSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC-
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCC
Confidence            9999999999999999999999999998754     59999999999999999999987653

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=8e-48  Score=313.95  Aligned_cols=256  Identities=28%  Similarity=0.348  Sum_probs=214.0

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCC-----CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcC
Q psy4998          27 DGFTPLAVAMQQGHDRVVAVLLENDTK-----GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYG  101 (318)
Q Consensus        27 ~~~t~l~~A~~~g~~~~~~~ll~~~~~-----~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~  101 (318)
                      +|.|||+.|+..|+.+++++|++.+..     +..+.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+..|
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence            356788888888888888888887654     344678888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCcc----------CCCCChHHHHHHHcCCHHH
Q psy4998         102 NTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK----------TRDGLTPLHCAARSGHDNV  171 (318)
Q Consensus       102 ~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~  171 (318)
                      +.+++++|+++|++++..+..|.|||+.|+..|+.+++++|++.|.+++..          +..|.|||+.|+..|+.++
T Consensus        84 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T 1wdy_A           84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHH
Confidence            888888888888888888888888888888888888888888888877766          6678888888888888888


Q ss_pred             HHHHHHc-CCCCcCCCCCCCcHhHHHhhcCC----HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHh-CC
Q psy4998         172 IDILIEK-GAALYSKTKAGFTPLHIASHFGQ----LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG-AG  245 (318)
Q Consensus       172 ~~~ll~~-~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~g  245 (318)
                      +++|++. |.+++..+..|.||||+|+..++    .+++++|+++|++++.++..|.||||+|+..|+.+++++|++ .|
T Consensus       164 v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g  243 (285)
T 1wdy_A          164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH  243 (285)
T ss_dssp             HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSS
T ss_pred             HHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccC
Confidence            8888887 88888888888888888888888    888888888888888888888888888888888888888888 78


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccce
Q psy4998         246 AQPNATTNHGQTALNIAQKLGYISVIETLKIVTETTI  282 (318)
Q Consensus       246 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~  282 (318)
                      ++++.+|..|.||+++|++.|+.+++++|...+.+.-
T Consensus       244 ~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~  280 (285)
T 1wdy_A          244 IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             CCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence            8888888888888888888888888888888876643

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.9e-47  Score=311.76  Aligned_cols=253  Identities=28%  Similarity=0.360  Sum_probs=241.5

Q ss_pred             CccccChHHHHHHHHhcCCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHH
Q psy4998           1 MAAQENHDGVVRYLLSKGGNQTLA-TEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAAL   75 (318)
Q Consensus         1 lA~~~g~~~~v~~Ll~~g~~~~~~-~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~   75 (318)
                      .|++.|++++|++|++.|++++.. +..|.||||+|+..|+.+++++|++.+..    +..+.||||+|+..|+.+++++
T Consensus        11 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~   90 (285)
T 1wdy_A           11 KAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKL   90 (285)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHH
Confidence            388999999999999999999988 77899999999999999999999998764    5668899999999999999999


Q ss_pred             HHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccc----------cCCCChHHHHHHHcCcHHHHHHHHHc
Q psy4998          76 LLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ----------AKHNITPLHVACKWGKVAMVELLISK  145 (318)
Q Consensus        76 ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~~~L~~~  145 (318)
                      |+++|.+++..+..|.||||+|+..|+.+++++|++.+.+++..          +..|.+||+.|+..|+.+++++|++.
T Consensus        91 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  170 (285)
T 1wdy_A           91 FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE  170 (285)
T ss_dssp             HHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHh
Confidence            99999999999999999999999999999999999999998876          67799999999999999999999998


Q ss_pred             -CCCCCccCCCCChHHHHHHHcCC----HHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHH-cCCCCCcCC
Q psy4998         146 -GANIEAKTRDGLTPLHCAARSGH----DNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE-NGANVNATT  219 (318)
Q Consensus       146 -~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~  219 (318)
                       |.+++..+..|.||||.|+..++    .+++++|+++|++++.++..|.||||+|+..++.+++++|++ .|++++.++
T Consensus       171 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~  250 (285)
T 1wdy_A          171 MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD  250 (285)
T ss_dssp             SCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCC
T ss_pred             cCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccC
Confidence             99999999999999999999999    999999999999999999999999999999999999999999 899999999


Q ss_pred             CCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCC
Q psy4998         220 NLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN  253 (318)
Q Consensus       220 ~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  253 (318)
                      ..|.||||+|+..|+.+++++|+++|++++.+|.
T Consensus       251 ~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d~  284 (285)
T 1wdy_A          251 SDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccc
Confidence            9999999999999999999999999999998873

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.3e-46  Score=315.80  Aligned_cols=275  Identities=28%  Similarity=0.349  Sum_probs=250.8

Q ss_pred             ccccChHHHHHHHHhc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHH
Q psy4998           2 AAQENHDGVVRYLLSK-GGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALL   76 (318)
Q Consensus         2 A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~l   76 (318)
                      ||+.|+.+.|++|+.. +.+++..+..|.||||+|+..|+.+++++|++.+..    +..+.||||+|+..|+.+++++|
T Consensus        31 A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~L  110 (351)
T 3utm_A           31 AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELL  110 (351)
T ss_dssp             HHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHH
Confidence            7899999999999976 889999999999999999999999999999998764    56788999999999999999999


Q ss_pred             HhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHH---------------------HHcCc
Q psy4998          77 LENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVA---------------------CKWGK  135 (318)
Q Consensus        77 l~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a---------------------~~~~~  135 (318)
                      +++|.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.++++.+                     +..+.
T Consensus       111 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (351)
T 3utm_A          111 LKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREAD  190 (351)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999998998887664                     45566


Q ss_pred             HHHHHHHHHcCCCCCccCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcC
Q psy4998         136 VAMVELLISKGANIEAKTRDGLTPLHCAARS---GHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENG  212 (318)
Q Consensus       136 ~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g  212 (318)
                      .+.+..++..+......+..+.||||+|+..   +..+++++|++.|++++.++..|.||||+|+..++.+++++|+++|
T Consensus       191 ~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  270 (351)
T 3utm_A          191 LAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG  270 (351)
T ss_dssp             HHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            6677777766655556777899999999999   5689999999999999999999999999999999999999999999


Q ss_pred             CCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcccc
Q psy4998         213 ANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTET  280 (318)
Q Consensus       213 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  280 (318)
                      ++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|    ..+++++|......
T Consensus       271 a~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~  334 (351)
T 3utm_A          271 AKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEAVQQILSESTPM  334 (351)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC---
T ss_pred             CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh----hHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999998    67888888776554

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=9.7e-48  Score=324.60  Aligned_cols=271  Identities=20%  Similarity=0.257  Sum_probs=233.5

Q ss_pred             ccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC--C-CCChhHHHHHHhCCCHHHHHHHH---
Q psy4998           4 QENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK--G-KVKLPALHIAAKKDDCKAAALLL---   77 (318)
Q Consensus         4 ~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~--~-~~~~~~l~~A~~~~~~~~~~~ll---   77 (318)
                      ..|+++++++++..     ..+..|.||||+|+..+ .+++++|+....+  + ..|.||||+|+..|+.+++++|+   
T Consensus        75 ~~g~~~~~~~~~~~-----~~~~~g~t~L~~Aa~~~-~~~~~~L~~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~  148 (373)
T 2fo1_E           75 FLGDFNHTNLQIPT-----EPEPESPIKLHTEAAGS-YAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHE  148 (373)
T ss_dssp             ------------------------CCCHHHHHHHSS-SCCCSCCSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHH
T ss_pred             cccccccccccccc-----CCCCCCccHHHHHhcCC-chHHHHhccccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            34566666665444     35677999999999965 4888888765332  3 67899999999999998888776   


Q ss_pred             -----hCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcC---CCC
Q psy4998          78 -----ENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKG---ANI  149 (318)
Q Consensus        78 -----~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~---~~~  149 (318)
                           +.|.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.|||++|+..|+.+++++|++.+   .++
T Consensus       149 ~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~  228 (373)
T 2fo1_E          149 AKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI  228 (373)
T ss_dssp             HHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT
T ss_pred             HHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh
Confidence                 889999999999999999999999999999999999999999999999999999999999999999987   789


Q ss_pred             CccCCCCChHHHHHHHcC---CHHHHHHHHHcCCCCcC--------CCCCCCcHhHHHhhcCCHHHHHHHHHcC-CCCCc
Q psy4998         150 EAKTRDGLTPLHCAARSG---HDNVIDILIEKGAALYS--------KTKAGFTPLHIASHFGQLNMVRYLVENG-ANVNA  217 (318)
Q Consensus       150 ~~~~~~~~~~l~~a~~~~---~~~~~~~ll~~~~~~~~--------~~~~~~t~l~~a~~~~~~~~~~~Ll~~g-~~~~~  217 (318)
                      +..+..|.||||+|+..+   +.+++++|+++|++++.        .+..|.||||+|+..|+.+++++|++++ ++++.
T Consensus       229 ~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~  308 (373)
T 2fo1_E          229 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK  308 (373)
T ss_dssp             SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTC
T ss_pred             hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccC
Confidence            999999999999999998   89999999999999875        5668999999999999999999999885 99999


Q ss_pred             CCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcccc
Q psy4998         218 TTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTET  280 (318)
Q Consensus       218 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  280 (318)
                      ++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.+++++|.....+
T Consensus       309 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          309 QDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            999999999999999999999999999999999999999999999999999999999987654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.4e-46  Score=303.83  Aligned_cols=253  Identities=24%  Similarity=0.280  Sum_probs=212.3

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhc---------------CCCCCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCC
Q psy4998          24 ATEDGFTPLAVAMQQGHDRVVAVLLEN---------------DTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSN   88 (318)
Q Consensus        24 ~~~~~~t~l~~A~~~g~~~~~~~ll~~---------------~~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~   88 (318)
                      ....|.|+||+|+..|+.+.+..++..               ...+..|.||||+|+..|+.+++++|++.|.+++..+.
T Consensus        11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~   90 (285)
T 3d9h_A           11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA   90 (285)
T ss_dssp             -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECT
T ss_pred             cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            445688999999999998777765443               22466788999999999999999999999999999999


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCC
Q psy4998          89 SHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGH  168 (318)
Q Consensus        89 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~  168 (318)
                      .|.||||+|+..|+.+++++|++.|++++..+..|.|||++|+..|+.+++++|++.|.+++..+ .|.|||++|+..|+
T Consensus        91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~  169 (285)
T 3d9h_A           91 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGH  169 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTC
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999887544 59999999999999


Q ss_pred             HHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCC
Q psy4998         169 DNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP  248 (318)
Q Consensus       169 ~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~  248 (318)
                      .+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++. +..|.||||+|+..++.+++++|+++|+++
T Consensus       170 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~  248 (285)
T 3d9h_A          170 VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADT  248 (285)
T ss_dssp             HHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            9999999999999999999999999999999999999999999999995 788999999999999999999999999999


Q ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHhhhcccc
Q psy4998         249 NATTNHGQTALNIAQKLGYISVIETLKIVTET  280 (318)
Q Consensus       249 ~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  280 (318)
                      +.+|..|+||+++|+  ++.+++++|......
T Consensus       249 ~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a  278 (285)
T 3d9h_A          249 QAKNAEGKRPVELVP--PESPLAQLFLEREGA  278 (285)
T ss_dssp             TCCCTTSCCGGGGSC--TTSHHHHHHHHHC--
T ss_pred             CCcCCCCCCHHHHhc--CccHHHHHHHHhhcc
Confidence            999999999999999  467999999887443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=4.6e-46  Score=298.19  Aligned_cols=246  Identities=26%  Similarity=0.334  Sum_probs=186.1

Q ss_pred             CCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCChhHHHHHHhCCCHHHHHHHHhCCCCCCC-CCCCCchHHHHHH
Q psy4998          20 NQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDV-KSNSHFTPLHIAA   98 (318)
Q Consensus        20 ~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~-~~~~~~~~l~~a~   98 (318)
                      +++.+|.+|.||||+|+.+|+.-.                ....+...++.+++++|++.|.+++. .+..|.||||+|+
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~----------------~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~   65 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLE----------------TGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAA   65 (253)
T ss_dssp             ------------------------------------------------------------------CCCTTSCCHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHhcccccc----------------ccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHH
Confidence            577889999999999999885311                11236678899999999999998765 4789999999999


Q ss_pred             HcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCC-CCCccCCCCChHHHHHHHcCCHHHHHHHHH
Q psy4998          99 HYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGA-NIEAKTRDGLTPLHCAARSGHDNVIDILIE  177 (318)
Q Consensus        99 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~  177 (318)
                      ..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..++.+++++|++
T Consensus        66 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  145 (253)
T 1yyh_A           66 RYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN  145 (253)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999986 888899999999999999999999999999


Q ss_pred             cCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCC
Q psy4998         178 KGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQT  257 (318)
Q Consensus       178 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t  257 (318)
                      .|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus       146 ~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t  225 (253)
T 1yyh_A          146 SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL  225 (253)
T ss_dssp             TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHhhhccccc
Q psy4998         258 ALNIAQKLGYISVIETLKIVTETT  281 (318)
Q Consensus       258 ~l~~A~~~~~~~~~~~l~~~~~~~  281 (318)
                      |+++|++.|+.+++++|.......
T Consensus       226 pl~~A~~~g~~~i~~~l~~~~~~~  249 (253)
T 1yyh_A          226 PRDIAQERMHHDIVRLLDLEHHHH  249 (253)
T ss_dssp             HHHHHHHTTCHHHHHHHHC-----
T ss_pred             HHHHHHHcCCHHHHHHHHHHhhhc
Confidence            999999999999999998776543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.1e-44  Score=286.69  Aligned_cols=230  Identities=31%  Similarity=0.457  Sum_probs=196.2

Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCC
Q psy4998          23 LATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGN  102 (318)
Q Consensus        23 ~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~  102 (318)
                      .+|.+|.||||+|+..|+.+++++|++                         .+.+.+.+++..+..|.||||+|+..|+
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~-------------------------~~~~~~~~~~~~~~~g~t~L~~A~~~~~   58 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGNLPAVHRLVN-------------------------LFQQGGRELDIYNNLRQTPLHLAVITTL   58 (241)
T ss_dssp             ---CTTCCHHHHHHHTTCHHHHHHHHH-------------------------HHHHTTCCSCCCCTTSCCHHHHHHHTTC
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHH-------------------------HHHhcCCCCCcccccCCCHHHHHHHcCC
Confidence            456666677777777766666666665                         2334677788888888899999999999


Q ss_pred             HHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCC----CCCccCCCCChHHHHHHHcCCHHHHHHHHHc
Q psy4998         103 TNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGA----NIEAKTRDGLTPLHCAARSGHDNVIDILIEK  178 (318)
Q Consensus       103 ~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  178 (318)
                      .+++++|++.|.+++..+..|.|||++|+..++.+++++|++.+.    +++..+..|.||||+|+..++.+++++|++.
T Consensus        59 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  138 (241)
T 1k1a_A           59 PSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER  138 (241)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHc
Confidence            999999998888888888888899999999999999999988876    7778888899999999999999999999999


Q ss_pred             CCCCcCCC-CCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCC
Q psy4998         179 GAALYSKT-KAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQT  257 (318)
Q Consensus       179 ~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t  257 (318)
                      |++++..+ ..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus       139 g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t  218 (241)
T 1k1a_A          139 GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDT  218 (241)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCC
Confidence            99998888 78999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHhhhc
Q psy4998         258 ALNIAQKLGYISVIETLKIV  277 (318)
Q Consensus       258 ~l~~A~~~~~~~~~~~l~~~  277 (318)
                      |+++|+..|+.++++.|...
T Consensus       219 pl~~A~~~~~~~i~~~l~~~  238 (241)
T 1k1a_A          219 PLMVARSRRVIDILRGKATR  238 (241)
T ss_dssp             TTTTCSSHHHHHHHTC----
T ss_pred             HHHHHHhcCcHHHHhhhccC
Confidence            99999999999998887654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=3.6e-43  Score=293.25  Aligned_cols=255  Identities=28%  Similarity=0.351  Sum_probs=236.0

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCC-----CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcC
Q psy4998          27 DGFTPLAVAMQQGHDRVVAVLLENDTK-----GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYG  101 (318)
Q Consensus        27 ~~~t~l~~A~~~g~~~~~~~ll~~~~~-----~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~  101 (318)
                      +|.|+|+.|+..|++++|++|++.|++     +..|.||||+|+..|+.+++++|+++|++++..+..+.++++.++..+
T Consensus        24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  103 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG  103 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcc
Confidence            367899999999999999999999765     234789999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCcc----------CCCCChHHHHHHHcCCHHH
Q psy4998         102 NTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK----------TRDGLTPLHCAARSGHDNV  171 (318)
Q Consensus       102 ~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~  171 (318)
                      ...++..++..+.+++..+..|.||++.|+..|+.+++++|++.|++++..          +..|.||||+|+..|+.++
T Consensus       104 ~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~  183 (337)
T 4g8k_A          104 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  183 (337)
T ss_dssp             CHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHH
T ss_pred             cchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHH
Confidence            999999999999999999999999999999999999999999999887643          3458899999999999999


Q ss_pred             HHHHHH-cCCCCcCCCCCCCcHhHHHhhcCC----HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhC-C
Q psy4998         172 IDILIE-KGAALYSKTKAGFTPLHIASHFGQ----LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA-G  245 (318)
Q Consensus       172 ~~~ll~-~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-g  245 (318)
                      +++|++ .|++++..+..|.|+++.++..+.    ..++++|+++|++++.++..|.||||+|+..|+.+++++|++. |
T Consensus       184 v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~  263 (337)
T 4g8k_A          184 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH  263 (337)
T ss_dssp             HHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTT
T ss_pred             HHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcC
Confidence            999996 599999999999999998775443    4688999999999999999999999999999999999999985 8


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccc
Q psy4998         246 AQPNATTNHGQTALNIAQKLGYISVIETLKIVTETT  281 (318)
Q Consensus       246 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  281 (318)
                      ++++.+|..|+||||+|++.|+.++|++|...+.+.
T Consensus       264 ~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~  299 (337)
T 4g8k_A          264 IEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST  299 (337)
T ss_dssp             CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSS
T ss_pred             CcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            999999999999999999999999999999987654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=9.6e-44  Score=289.37  Aligned_cols=246  Identities=24%  Similarity=0.303  Sum_probs=208.6

Q ss_pred             CccccChHHHHHHHHhcC-----------CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHH
Q psy4998           1 MAAQENHDGVVRYLLSKG-----------GNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAA   65 (318)
Q Consensus         1 lA~~~g~~~~v~~Ll~~g-----------~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~   65 (318)
                      +|++.|+.+.+..++..+           ...+..+..|.||||+|+..|+.+++++|++.+..    +..+.||||+|+
T Consensus        21 ~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  100 (285)
T 3d9h_A           21 MASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEAC  100 (285)
T ss_dssp             ---------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHH
T ss_pred             HHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            589999988877766543           13456788999999999999999999999998654    567899999999


Q ss_pred             hCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHc
Q psy4998          66 KKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK  145 (318)
Q Consensus        66 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~  145 (318)
                      ..|+.+++++|+++|.+++..+..|.||||+|+..|+.+++++|++.+++++..+ .|.|||++|+..|+.+++++|++.
T Consensus       101 ~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~  179 (285)
T 3d9h_A          101 LGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAY  179 (285)
T ss_dssp             HTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999999999999887554 599999999999999999999999


Q ss_pred             CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCH
Q psy4998         146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTP  225 (318)
Q Consensus       146 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  225 (318)
                      |.+++..+..|.|||++|+..|+.+++++|++.|++++. +..|.||||+|+..++.+++++|+++|++++.+|..|.||
T Consensus       180 g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~  258 (285)
T 3d9h_A          180 GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRP  258 (285)
T ss_dssp             TCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCG
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            999999999999999999999999999999999999984 8889999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHhHHHHHHhC-CCCCCC
Q psy4998         226 LHQASQQGRVLIIDLLLGA-GAQPNA  250 (318)
Q Consensus       226 l~~A~~~~~~~~~~~Ll~~-g~~~~~  250 (318)
                      |++|+  ++.+++++|+++ |+++..
T Consensus       259 l~~A~--~~~~~~~~Ll~~~~a~l~~  282 (285)
T 3d9h_A          259 VELVP--PESPLAQLFLEREGASLPK  282 (285)
T ss_dssp             GGGSC--TTSHHHHHHHHHC------
T ss_pred             HHHhc--CccHHHHHHHHhhccCCCC
Confidence            99999  457999999998 877654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.7e-43  Score=280.69  Aligned_cols=221  Identities=24%  Similarity=0.333  Sum_probs=193.4

Q ss_pred             CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHc
Q psy4998          54 GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKW  133 (318)
Q Consensus        54 ~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~  133 (318)
                      +..+.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+..|+.+++++|++.|.+++..+..|.|||+.|+..
T Consensus         8 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   87 (237)
T 3b7b_A            8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKK   87 (237)
T ss_dssp             SCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHT
T ss_pred             cCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Confidence            33444555555555556666666666777777788888999999999999999999999988888888889999999999


Q ss_pred             CcHHHHHHHHHcC-CCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcC
Q psy4998         134 GKVAMVELLISKG-ANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENG  212 (318)
Q Consensus       134 ~~~~~~~~L~~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g  212 (318)
                      |+.+++++|++.+ .+++..+..|.|||++|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|
T Consensus        88 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  167 (237)
T 3b7b_A           88 GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAK  167 (237)
T ss_dssp             TCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTT
T ss_pred             CCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999987 788888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHh
Q psy4998         213 ANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL  274 (318)
Q Consensus       213 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  274 (318)
                      ++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+..++.+.+..+
T Consensus       168 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l  229 (237)
T 3b7b_A          168 CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM  229 (237)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHH
T ss_pred             CCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999987544444

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.9e-45  Score=310.19  Aligned_cols=259  Identities=21%  Similarity=0.203  Sum_probs=230.4

Q ss_pred             CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHH
Q psy4998          19 GNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPL   94 (318)
Q Consensus        19 ~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l   94 (318)
                      .+++..|..|.||||+|+..|+.+++++|++.+..    +..+.||||+|+..|+.+++++|+++|.+++.  ..|.|||
T Consensus        11 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L   88 (364)
T 3ljn_A           11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPI   88 (364)
T ss_dssp             -----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHH
T ss_pred             CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHH
Confidence            45566788899999999999999999999998654    56788999999999999999999999985543  5789999


Q ss_pred             HHHHHcCCHHHHHHHHhc----cCCccc-----------------ccCCCChHHHHHHHcC--cHHHHHHHHHcCCCCCc
Q psy4998          95 HIAAHYGNTNIAELLIQK----HANVNN-----------------QAKHNITPLHVACKWG--KVAMVELLISKGANIEA  151 (318)
Q Consensus        95 ~~a~~~~~~~~~~~ll~~----~~~~~~-----------------~~~~~~~~l~~a~~~~--~~~~~~~L~~~~~~~~~  151 (318)
                      |+|+..|+.+++++|++.    +.+++.                 .+..|.||||+|+..|  +.+++++|++.|++++.
T Consensus        89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~  168 (364)
T 3ljn_A           89 HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA  168 (364)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTC
T ss_pred             HHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcc
Confidence            999999999999999998    777666                 7778999999999999  99999999999999999


Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHcCCC-----CcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHH
Q psy4998         152 KTRDGLTPLHCAARSGHDNVIDILIEKGAA-----LYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPL  226 (318)
Q Consensus       152 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-----~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l  226 (318)
                      .+..|.||||+|+..|+.+++++|+++|++     ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus       169 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL  248 (364)
T 3ljn_A          169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPL  248 (364)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            999999999999999999999999999998     899999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHhHHHHHHhCCCCCC------------CCCCCCCCHHHHHHHcCCHHHHHHhhhccc
Q psy4998         227 HQASQQGRVLIIDLLLGAGAQPN------------ATTNHGQTALNIAQKLGYISVIETLKIVTE  279 (318)
Q Consensus       227 ~~A~~~~~~~~~~~Ll~~g~~~~------------~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  279 (318)
                      |+|+..|+.+++++|+++|++++            ..+..+.+|++.|+..++.+.+..|.....
T Consensus       249 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~  313 (364)
T 3ljn_A          249 YLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL  313 (364)
T ss_dssp             HHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHHH
Confidence            99999999999999999987642            256678899999999986666666554443

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=6.9e-44  Score=299.24  Aligned_cols=266  Identities=27%  Similarity=0.325  Sum_probs=239.9

Q ss_pred             hcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcC-----CCCCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCC
Q psy4998          16 SKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEND-----TKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSH   90 (318)
Q Consensus        16 ~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~-----~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~   90 (318)
                      +.+++....+..+.++|+.|+..|+.+.++.++...     ..+..+.||||+|+..|+.+++++|+++|.+++..+..|
T Consensus        12 ~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g   91 (351)
T 3utm_A           12 DPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGG   91 (351)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             CCceeeeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC
Confidence            333444445666789999999999999999999762     235678899999999999999999999999999999999


Q ss_pred             chHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHH-------
Q psy4998          91 FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCA-------  163 (318)
Q Consensus        91 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a-------  163 (318)
                      .||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|++.|.+++..+..+.++++.+       
T Consensus        92 ~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~  171 (351)
T 3utm_A           92 LVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRE  171 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHH
T ss_pred             CcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999887664       


Q ss_pred             --------------HHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhc---CCHHHHHHHHHcCCCCCcCCCCCCCHH
Q psy4998         164 --------------ARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHF---GQLNMVRYLVENGANVNATTNLGYTPL  226 (318)
Q Consensus       164 --------------~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~---~~~~~~~~Ll~~g~~~~~~~~~g~t~l  226 (318)
                                    +..+..+.+..++.........+..|.||||+|+..   +..+++++|+++|++++.++..|.|||
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L  251 (351)
T 3utm_A          172 RLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPL  251 (351)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             HHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHH
Confidence                          556666777777766655556778899999999998   668999999999999999999999999


Q ss_pred             HHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccc
Q psy4998         227 HQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETT  281 (318)
Q Consensus       227 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  281 (318)
                      |+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|...+.+.
T Consensus       252 ~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~  306 (351)
T 3utm_A          252 HVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDP  306 (351)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999999999999999999999997764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.4e-43  Score=288.55  Aligned_cols=246  Identities=24%  Similarity=0.255  Sum_probs=194.5

Q ss_pred             CCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-------CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchH
Q psy4998          21 QTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK-------GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTP   93 (318)
Q Consensus        21 ~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~-------~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   93 (318)
                      ++..+..|.||||+|+..|+.+++++|++.+..       +..+.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp   81 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            356889999999999999999999999986543       5678999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhccCCcccc-------------cCCCChHHHHHHHcCc-HHHHHHHHHcCCCCCccCCCCChH
Q psy4998          94 LHIAAHYGNTNIAELLIQKHANVNNQ-------------AKHNITPLHVACKWGK-VAMVELLISKGANIEAKTRDGLTP  159 (318)
Q Consensus        94 l~~a~~~~~~~~~~~ll~~~~~~~~~-------------~~~~~~~l~~a~~~~~-~~~~~~L~~~~~~~~~~~~~~~~~  159 (318)
                      ||+|+..++.+++++|++.++.....             ...+.++++.+...+. ......+...+.+++..+..|.||
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  161 (282)
T 1oy3_D           82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (282)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence            99999999999999999988764321             1223445555544433 233444445567788889999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcCCCCC-CCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHH
Q psy4998         160 LHCAARSGHDNVIDILIEKGAALYSKTKA-GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII  238 (318)
Q Consensus       160 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~  238 (318)
                      ||+|+..|+.+++++|+++|++++..+.. |.||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+.+++
T Consensus       162 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v  241 (282)
T 1oy3_D          162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILA  241 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHH
Confidence            99999999999999999999999998854 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCHHHHHHHcC
Q psy4998         239 DLLLGAGAQPNATTNHGQTALNIAQKLG  266 (318)
Q Consensus       239 ~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  266 (318)
                      ++|+++|++++.++..|.||+++|....
T Consensus       242 ~~Ll~~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          242 RLLRAHGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             HHHHHTTCCCCCCC--------------
T ss_pred             HHHHHcCCCcCcCCCcccccccccCCcc
Confidence            9999999999999999999999998765

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=4.6e-43  Score=277.14  Aligned_cols=223  Identities=28%  Similarity=0.315  Sum_probs=183.7

Q ss_pred             ChhHHHHHHhCCCHHHHHHHHhCCCC-CCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCc
Q psy4998          57 KLPALHIAAKKDDCKAAALLLENDHS-PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGK  135 (318)
Q Consensus        57 ~~~~l~~A~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~  135 (318)
                      +.++|+.|+..|+.+.++++++.+.. .+..+..|.||||+|+..|+.+++++|++.+.+++..+..|.|||++|+..|+
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   85 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGX   85 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC
T ss_pred             ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCH
Confidence            34556666666666666666554432 45566778888888888888888888888888888777788888888888888


Q ss_pred             HHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCC
Q psy4998         136 VAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANV  215 (318)
Q Consensus       136 ~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~  215 (318)
                      .+++++|++.|.+++.++..|.||||+|+..++.+++++|+++|.+++..+..|.||||+|+..++.+++++|+++|+++
T Consensus        86 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  165 (231)
T 3aji_A           86 DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST  165 (231)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc
Confidence            88888888888888888888888888888888888888888888888888888889999999989999999999999999


Q ss_pred             CcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccc
Q psy4998         216 NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTE  279 (318)
Q Consensus       216 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  279 (318)
                      +.++..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|++.++.+++++|.....
T Consensus       166 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a  229 (231)
T 3aji_A          166 NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA  229 (231)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence            8888889999999999999999999999999998888899999999988888888888877654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.8e-42  Score=273.67  Aligned_cols=225  Identities=26%  Similarity=0.347  Sum_probs=213.1

Q ss_pred             CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHH
Q psy4998          19 GNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPL   94 (318)
Q Consensus        19 ~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l   94 (318)
                      .+++..+..|.||||+|+..|+.+++++|++.+..    +..+.||||+|+..|+.+++++|+++|.+++..+..|.|||
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   81 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCL   81 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHH
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHH
Confidence            46778899999999999999999999999998654    55678999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcc-CCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHH
Q psy4998          95 HIAAHYGNTNIAELLIQKH-ANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVID  173 (318)
Q Consensus        95 ~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  173 (318)
                      |+|+..|+.+++++|++.+ .+++..+..|.|||+.|+..++.+++++|++.|.+++.++..|.||||+|+..|+.++++
T Consensus        82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~  161 (237)
T 3b7b_A           82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAE  161 (237)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHH
Confidence            9999999999999999998 788888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHh
Q psy4998         174 ILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG  243 (318)
Q Consensus       174 ~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  243 (318)
                      +|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..++.+.+..|++
T Consensus       162 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          162 ILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             HHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             HHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999866655544

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=9.4e-43  Score=275.36  Aligned_cols=222  Identities=26%  Similarity=0.319  Sum_probs=213.3

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCC-----CCCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcC
Q psy4998          27 DGFTPLAVAMQQGHDRVVAVLLENDT-----KGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYG  101 (318)
Q Consensus        27 ~~~t~l~~A~~~g~~~~~~~ll~~~~-----~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~  101 (318)
                      .+.+||+.|+..|+.++++++++.+.     .+..+.||||+|+..|+.+++++|++.|.+++..+..|.||||+|+..+
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   84 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG   84 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence            46799999999999999999998754     3677899999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Q psy4998         102 NTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA  181 (318)
Q Consensus       102 ~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~  181 (318)
                      +.+++++|++.+.+++.++..|.|||+.|+..++.+++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|++
T Consensus        85 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  164 (231)
T 3aji_A           85 XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS  164 (231)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCC
Q psy4998         182 LYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP  248 (318)
Q Consensus       182 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~  248 (318)
                      ++.++..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..++.+++++|+++|+++
T Consensus       165 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~i  231 (231)
T 3aji_A          165 TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEASM  231 (231)
T ss_dssp             SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred             ccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999988764

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.5e-42  Score=292.61  Aligned_cols=227  Identities=23%  Similarity=0.301  Sum_probs=214.8

Q ss_pred             CCCCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHH
Q psy4998          52 TKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVAC  131 (318)
Q Consensus        52 ~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~  131 (318)
                      ..+..+.|+||+|+..|+.+++++|+++|.+++..+..|.||||+|+..|+.+++++|++.+++++.  ..|.|||++|+
T Consensus        15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~   92 (364)
T 3ljn_A           15 KSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAV   92 (364)
T ss_dssp             -CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHH
Confidence            3466788999999999999999999999999999999999999999999999999999999996553  47899999999


Q ss_pred             HcCcHHHHHHHHHc----CCCCCc-----------------cCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCcCCCCC
Q psy4998         132 KWGKVAMVELLISK----GANIEA-----------------KTRDGLTPLHCAARSG--HDNVIDILIEKGAALYSKTKA  188 (318)
Q Consensus       132 ~~~~~~~~~~L~~~----~~~~~~-----------------~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~  188 (318)
                      ..|+.+++++|++.    +.+++.                 .+..|.||||+|+..|  +.+++++|+++|++++..+..
T Consensus        93 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~  172 (364)
T 3ljn_A           93 MANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKA  172 (364)
T ss_dssp             HTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTT
T ss_pred             HcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCC
Confidence            99999999999998    777766                 7888999999999999  999999999999999999999


Q ss_pred             CCcHhHHHhhcCCHHHHHHHHHcCCC-----CCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q psy4998         189 GFTPLHIASHFGQLNMVRYLVENGAN-----VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQ  263 (318)
Q Consensus       189 ~~t~l~~a~~~~~~~~~~~Ll~~g~~-----~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~  263 (318)
                      |.||||+|+..|+.+++++|+++|++     ++..+..|.||||+|+..|+.+++++|+++|++++..|..|.|||++|+
T Consensus       173 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~  252 (364)
T 3ljn_A          173 DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSV  252 (364)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            99999999999999999999999999     9999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHhhhcccc
Q psy4998         264 KLGYISVIETLKIVTET  280 (318)
Q Consensus       264 ~~~~~~~~~~l~~~~~~  280 (318)
                      ..|+.+++++|......
T Consensus       253 ~~g~~~~v~~Ll~~~~~  269 (364)
T 3ljn_A          253 RAAMVLLTKELLQKTDV  269 (364)
T ss_dssp             HTCCHHHHHHHHHHSCH
T ss_pred             HhChHHHHHHHHHcCCc
Confidence            99999999999988654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.4e-43  Score=297.71  Aligned_cols=244  Identities=19%  Similarity=0.269  Sum_probs=221.7

Q ss_pred             ccccChHHHHHHHHhcCCCCCcCC-CCCCCHHHHHHHcCCHHHHHHHH--------hcCC----CCCCChhHHHHHHhCC
Q psy4998           2 AAQENHDGVVRYLLSKGGNQTLAT-EDGFTPLAVAMQQGHDRVVAVLL--------ENDT----KGKVKLPALHIAAKKD   68 (318)
Q Consensus         2 A~~~g~~~~v~~Ll~~g~~~~~~~-~~~~t~l~~A~~~g~~~~~~~ll--------~~~~----~~~~~~~~l~~A~~~~   68 (318)
                      |+. |+.+++++|+.  .+++..+ ..|.||||+|+..|+.+++++|+        +.+.    .+..+.||||+|+..|
T Consensus       101 Aa~-~~~~~~~~L~~--~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g  177 (373)
T 2fo1_E          101 EAA-GSYAITEPITR--ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLAR  177 (373)
T ss_dssp             HHH-SSSCCCSCCST--TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHT
T ss_pred             Hhc-CCchHHHHhcc--ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcC
Confidence            555 44578888865  4666777 68999999999999999988887        4443    3667899999999999


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcc---CCcccccCCCChHHHHHHHcC---cHHHHHHH
Q psy4998          69 DCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKH---ANVNNQAKHNITPLHVACKWG---KVAMVELL  142 (318)
Q Consensus        69 ~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~---~~~~~~~~~~~~~l~~a~~~~---~~~~~~~L  142 (318)
                      +.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.+   .+++..+..|.|||++|+..+   +.+++++|
T Consensus       178 ~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~L  257 (373)
T 2fo1_E          178 RRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLL  257 (373)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHH
T ss_pred             hHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHH
Confidence            999999999999999999999999999999999999999999988   788889999999999999998   89999999


Q ss_pred             HHcCCCCCc--------cCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCC
Q psy4998         143 ISKGANIEA--------KTRDGLTPLHCAARSGHDNVIDILIEKG-AALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA  213 (318)
Q Consensus       143 ~~~~~~~~~--------~~~~~~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~  213 (318)
                      ++.|.+++.        .+..|.||||+|+..|+.+++++|++.+ ++++..+..|.||||+|+..|+.+++++|+++|+
T Consensus       258 l~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  337 (373)
T 2fo1_E          258 VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA  337 (373)
T ss_dssp             HHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            999998875        5668999999999999999999999886 9999999999999999999999999999999999


Q ss_pred             CCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCC
Q psy4998         214 NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP  248 (318)
Q Consensus       214 ~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~  248 (318)
                      +++.+|..|.|||++|+..|+.+++++|+++|++.
T Consensus       338 d~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          338 SVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             CSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred             CccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            99999999999999999999999999999998763

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=5e-43  Score=281.99  Aligned_cols=219  Identities=29%  Similarity=0.411  Sum_probs=163.4

Q ss_pred             hHHHHHHhCCCHHHHHHHHhCCCC--------CCCCCCCCchHHHHHHHcCCH-HHHHHHHhccCCcccccCCCChHHHH
Q psy4998          59 PALHIAAKKDDCKAAALLLENDHS--------PDVKSNSHFTPLHIAAHYGNT-NIAELLIQKHANVNNQAKHNITPLHV  129 (318)
Q Consensus        59 ~~l~~A~~~~~~~~~~~ll~~~~~--------~~~~~~~~~~~l~~a~~~~~~-~~~~~ll~~~~~~~~~~~~~~~~l~~  129 (318)
                      ++|+.|+..|+.+++++|++.+.+        ++..+..+.+||+.|+..+.. .++++|++.|++++..+..|.||||+
T Consensus        13 ~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~   92 (269)
T 4b93_B           13 EKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHV   92 (269)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            444444444444444444444332        344566788999999987765 48899999999999999999999999


Q ss_pred             HHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHH
Q psy4998         130 ACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLV  209 (318)
Q Consensus       130 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  209 (318)
                      |+..|+.+++++|++.+++++..+..|.||++.|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+
T Consensus        93 A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll  172 (269)
T 4b93_B           93 AALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLL  172 (269)
T ss_dssp             HHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHH
T ss_pred             HHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccc
Q psy4998         210 ENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTE  279 (318)
Q Consensus       210 ~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  279 (318)
                      ++|++++..+..|.||||+|+..|+.+++++|+++|+|++.+|..|+|||++|++++  +++++|+....
T Consensus       173 ~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~--~i~~lL~~l~~  240 (269)
T 4b93_B          173 QHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNS--KIMELLQVVPS  240 (269)
T ss_dssp             HTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTC--HHHHHTTC---
T ss_pred             HCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCC--cHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998755  56777765544

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.9e-42  Score=281.61  Aligned_cols=255  Identities=18%  Similarity=0.193  Sum_probs=217.2

Q ss_pred             ChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC--CCCChhHHHHHHhCCCHHHHHHHHhCCCCC
Q psy4998           6 NHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK--GKVKLPALHIAAKKDDCKAAALLLENDHSP   83 (318)
Q Consensus         6 g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~--~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~   83 (318)
                      +..+++++|.+.  +++..|..|.||||+|+..|+.+++++|++.+..  ...|.||||+|+..|+.+++++|+++|+++
T Consensus        11 ~~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~   88 (285)
T 3kea_A           11 KSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDD   88 (285)
T ss_dssp             CHHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCT
T ss_pred             CHHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            444555555554  5788999999999999999999999999998654  335789999999999999999999999999


Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCC-ChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHH
Q psy4998          84 DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHN-ITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHC  162 (318)
Q Consensus        84 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~  162 (318)
                      +..+..|.||||+|+..|+.+++++|+++|++++..+..| .|||+.|+..|+.+++++|++.|.+.... ..|.||||+
T Consensus        89 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~  167 (285)
T 3kea_A           89 SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHI  167 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHH
T ss_pred             CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHH
Confidence            9999999999999999999999999999999999998888 79999999999999999999998776322 278899999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCcCCCCCCCcH-hHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHH
Q psy4998         163 AARSGHDNVIDILIEKGAALYSKTKAGFTP-LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL  241 (318)
Q Consensus       163 a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~-l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  241 (318)
                      |+..|+.+++++|+++|++++.++..|.|| ||+|+..++.+++++|+++|++++..+.       .|+..|+.+++++|
T Consensus       168 A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~L  240 (285)
T 3kea_A          168 TIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMI  240 (285)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHH
T ss_pred             HHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHH
Confidence            999999999999999999999999999997 9999999999999999999999998773       56778999999999


Q ss_pred             HhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q psy4998         242 LGAGAQPNATTNHGQTALNIAQKLGYISVIE  272 (318)
Q Consensus       242 l~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~  272 (318)
                      +++|+++...+...  .+..+......++++
T Consensus       241 l~~g~~~~~~~~~~--~~~~~~~~~~~~ii~  269 (285)
T 3kea_A          241 IEKHVEYKSDSYTK--DLDIVKNNKLDEIIS  269 (285)
T ss_dssp             HHHHHHHTTCTTTT--TCHHHHTCSHHHHHH
T ss_pred             HHcCCCCCCccccc--hHHHHhhhhHHHHHh
Confidence            99998887654433  344444444444443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.6e-41  Score=268.53  Aligned_cols=228  Identities=27%  Similarity=0.326  Sum_probs=200.6

Q ss_pred             CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccC-CCChHHHHHHH
Q psy4998          54 GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAK-HNITPLHVACK  132 (318)
Q Consensus        54 ~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~~l~~a~~  132 (318)
                      +..+.++|+.|+..|+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|++.+.+++.... .|.|||+.|+.
T Consensus         6 d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~   85 (240)
T 3eu9_A            6 DDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATR   85 (240)
T ss_dssp             SCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHH
T ss_pred             ccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHH
Confidence            45566788888888888888888888888888888899999999999999999999999888775544 48899999999


Q ss_pred             cCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCC-HHHHHHHHHc
Q psy4998         133 WGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQ-LNMVRYLVEN  211 (318)
Q Consensus       133 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~-~~~~~~Ll~~  211 (318)
                      .|+.+++++|++.|.+++..+..+.+||+.|+..++.+++++|+++|++++..+..|.||+|.|+..+. .+++++|++.
T Consensus        86 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~  165 (240)
T 3eu9_A           86 QGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF  165 (240)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHT
T ss_pred             cCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhc
Confidence            999999999999999998888899999999999999999999999999999999999999999996655 8899999999


Q ss_pred             CCCCCcCCC-CCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccc
Q psy4998         212 GANVNATTN-LGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETT  281 (318)
Q Consensus       212 g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  281 (318)
                      |++++..+. .|.||||+|+..|+.+++++|+++|++++..+..|.||+++|++.|+.+++++|.......
T Consensus       166 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          166 NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK  236 (240)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred             CCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence            999998887 8999999999999999999999999999999999999999999999999999998876653

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=9.9e-42  Score=268.95  Aligned_cols=218  Identities=28%  Similarity=0.376  Sum_probs=191.7

Q ss_pred             ChhHHHHHHhCCCHHHHHHHHhCCCCCCC-CCCCCchHHHHHHHcCCHHHHHHHHhcc--CCccc-ccCCCChHHHHHHH
Q psy4998          57 KLPALHIAAKKDDCKAAALLLENDHSPDV-KSNSHFTPLHIAAHYGNTNIAELLIQKH--ANVNN-QAKHNITPLHVACK  132 (318)
Q Consensus        57 ~~~~l~~A~~~~~~~~~~~ll~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~ll~~~--~~~~~-~~~~~~~~l~~a~~  132 (318)
                      |.||||.|+..|+.+++++|++.+.+... .+..|.||||+|+..|+.+++++|++.+  .+++. .+..|.|||+.|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            45777777777777777777777766443 7788899999999999999999999998  55555 66789999999999


Q ss_pred             cCcHHHHHHHHHcC--CCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHH
Q psy4998         133 WGKVAMVELLISKG--ANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE  210 (318)
Q Consensus       133 ~~~~~~~~~L~~~~--~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  210 (318)
                      .|+.+++++|++.|  .+++..+..|.||||.|+..++.+++++|+++|++++.++..|.||||+|+..++.+++++|++
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  161 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  161 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999988  8888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC-CCCCcCCCCCCCHHHHHHHcCCHhHHHHHH-hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhc
Q psy4998         211 NG-ANVNATTNLGYTPLHQASQQGRVLIIDLLL-GAGAQPNATTNHGQTALNIAQKLGYISVIETLKIV  277 (318)
Q Consensus       211 ~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  277 (318)
                      +| ++++.++..|.||||+|+..|+.+++++|+ ++|++++.+|..|.||+++|.+.   +++++|..+
T Consensus       162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~  227 (228)
T 2dzn_A          162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN  227 (228)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred             cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence            99 999999999999999999999999999999 88999999999999999999754   666676543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.7e-41  Score=266.69  Aligned_cols=213  Identities=26%  Similarity=0.325  Sum_probs=191.0

Q ss_pred             CCHHHHHHHHhCCCCCCCC-CCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcC
Q psy4998          68 DDCKAAALLLENDHSPDVK-SNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKG  146 (318)
Q Consensus        68 ~~~~~~~~ll~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~  146 (318)
                      |+.+++++|+++|.+++.. +..|.||||+|+..|+.+++++|++.+.+++..+..|.|||++|+..|+.+++++|++.+
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~   81 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR   81 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            6778888888888887765 788999999999999999999999999999888888999999999999999999999987


Q ss_pred             C-CCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCH
Q psy4998         147 A-NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTP  225 (318)
Q Consensus       147 ~-~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  225 (318)
                      . +++..+..+.|||++|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||
T Consensus        82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  161 (223)
T 2f8y_A           82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP  161 (223)
T ss_dssp             TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCH
Confidence            6 778888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcccc
Q psy4998         226 LHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTET  280 (318)
Q Consensus       226 l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  280 (318)
                      ||+|+..|+.+++++|+++|++++.+|..|.||+++|++.++.+++++|..++..
T Consensus       162 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          162 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999887664

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=5.4e-42  Score=281.49  Aligned_cols=264  Identities=25%  Similarity=0.321  Sum_probs=219.5

Q ss_pred             ccccChHHHHHHHHhcCCCCCc---------CCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCC
Q psy4998           2 AAQENHDGVVRYLLSKGGNQTL---------ATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKD   68 (318)
Q Consensus         2 A~~~g~~~~v~~Ll~~g~~~~~---------~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~   68 (318)
                      |++.|+.+.++.++.....+..         .+..|.|||+.||..|+.+++++|++.+..    +..+.||||+|+..|
T Consensus         5 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g   84 (299)
T 1s70_B            5 DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDD   84 (299)
T ss_dssp             HHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence            6778888989988887665332         123466899999999999999999998754    566789999999999


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHc-CC
Q psy4998          69 DCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK-GA  147 (318)
Q Consensus        69 ~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~-~~  147 (318)
                      +.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..++.+++++++.. +.
T Consensus        85 ~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~  164 (299)
T 1s70_B           85 NVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV  164 (299)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988865 55


Q ss_pred             CCCccCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHH
Q psy4998         148 NIEAKTRDGLTPLHCAARSGHDNVIDILIEKG-AALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPL  226 (318)
Q Consensus       148 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l  226 (318)
                      +++.....+.++++        ..+..++..+ ......+..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus       165 ~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL  236 (299)
T 1s70_B          165 DIEAARKEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPL  236 (299)
T ss_dssp             CHHHHHHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHH
T ss_pred             CchhhhhhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence            44332222222222        2334444444 44455677899999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHh
Q psy4998         227 HQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL  274 (318)
Q Consensus       227 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  274 (318)
                      |+|+..|+.+++++|+++|++++.+|..|.||+++|.+.. .+.++.+
T Consensus       237 ~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~-~~~l~~l  283 (299)
T 1s70_B          237 HAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDI-LGYLEEL  283 (299)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGG-GHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHH-HHHHHHH
Confidence            9999999999999999999999999999999999997643 3333333

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.3e-40  Score=264.62  Aligned_cols=229  Identities=25%  Similarity=0.295  Sum_probs=210.4

Q ss_pred             CCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCC-CCchHHH
Q psy4998          21 QTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSN-SHFTPLH   95 (318)
Q Consensus        21 ~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~-~~~~~l~   95 (318)
                      ++..+..|.|+|+.|+..|+.+++++|++.+..    +..+.||||+|+..|+.+++++|++++.+++.... .|.|||+
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~   81 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLH   81 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHH
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhH
Confidence            445678889999999999999999999998654    55678999999999999999999999998776554 4899999


Q ss_pred             HHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCC-HHHHHH
Q psy4998          96 IAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGH-DNVIDI  174 (318)
Q Consensus        96 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~  174 (318)
                      +|+..++.+++++|++.|++++..+..|.+||+.|+..|+.+++++|++.|.+++..+..|.|||+.|+..+. .+++++
T Consensus        82 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~  161 (240)
T 3eu9_A           82 WATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRL  161 (240)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999997666 899999


Q ss_pred             HHHcCCCCcCCCC-CCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCC
Q psy4998         175 LIEKGAALYSKTK-AGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN  249 (318)
Q Consensus       175 ll~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~  249 (318)
                      |++.+.+++..+. .|.||||+|+..++.+++++|+++|++++.++..|.|||++|+..|+.+++++|+++|.+..
T Consensus       162 L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~  237 (240)
T 3eu9_A          162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG  237 (240)
T ss_dssp             HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred             HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence            9999999998887 89999999999999999999999999999999999999999999999999999999987754

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-42  Score=278.00  Aligned_cols=225  Identities=25%  Similarity=0.336  Sum_probs=180.9

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhcCCC------------CCCChhHHHHHHhCCCH-HHHHHHHhCCCCCCCCCCCC
Q psy4998          24 ATEDGFTPLAVAMQQGHDRVVAVLLENDTK------------GKVKLPALHIAAKKDDC-KAAALLLENDHSPDVKSNSH   90 (318)
Q Consensus        24 ~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~------------~~~~~~~l~~A~~~~~~-~~~~~ll~~~~~~~~~~~~~   90 (318)
                      .|..+.++|+.||..|++++|++|++.+..            +..+.+||+.|+..++. .+++.|++.|++++..+..|
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G   86 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDG   86 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTS
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCC
Confidence            455677899999999999999999987553            33467899999988776 47899999999999999999


Q ss_pred             chHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHH
Q psy4998          91 FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDN  170 (318)
Q Consensus        91 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~  170 (318)
                      .||||+|+..|+.+++++|++.+++++..+..|.||++.|+..++.+++++|++.|++++.++..|.||||+|+..|+.+
T Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~  166 (269)
T 4b93_B           87 SSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHE  166 (269)
T ss_dssp             CCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGG
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC-HhHHHHHHhCCCCC
Q psy4998         171 VIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR-VLIIDLLLGAGAQP  248 (318)
Q Consensus       171 ~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~-~~~~~~Ll~~g~~~  248 (318)
                      ++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|++++. .+++++|...+..+
T Consensus       167 ~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~  245 (269)
T 4b93_B          167 LVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASL  245 (269)
T ss_dssp             GHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC--------
T ss_pred             HHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhh
Confidence            9999999999999999999999999999999999999999999999999999999999998775 35555555555544

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=9.5e-41  Score=262.43  Aligned_cols=215  Identities=23%  Similarity=0.302  Sum_probs=185.2

Q ss_pred             ChHHHHHHHHhcCCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCChhHHHHHHhCCCHHHHHHHHhCCCCCC
Q psy4998           6 NHDGVVRYLLSKGGNQTLA-TEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPD   84 (318)
Q Consensus         6 g~~~~v~~Ll~~g~~~~~~-~~~~~t~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~   84 (318)
                      |+.++|++|+++|++++.. +..|.||||+|+..|+.+++++|++                             +|.+++
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-----------------------------~g~~~~   52 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE-----------------------------ASADAN   52 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-----------------------------TTCCTT
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHH-----------------------------cCCCCC
Confidence            6788888888888887664 6778888777777766666665554                             455566


Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHhccC-CcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHH
Q psy4998          85 VKSNSHFTPLHIAAHYGNTNIAELLIQKHA-NVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCA  163 (318)
Q Consensus        85 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a  163 (318)
                      ..+..|.||||+|+..++.+++++|++.+. +++..+..|.|||+.|+..++.+++++|++.|.+++..+..|.||||+|
T Consensus        53 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  132 (223)
T 2f8y_A           53 IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA  132 (223)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHH
Confidence            677888889999999999999999988876 7777788888999999999999999999999999988898999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHh
Q psy4998         164 ARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG  243 (318)
Q Consensus       164 ~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  243 (318)
                      +..++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..++.+++++|++
T Consensus       133 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~  212 (223)
T 2f8y_A          133 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE  212 (223)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy4998         244 AGAQPN  249 (318)
Q Consensus       244 ~g~~~~  249 (318)
                      +|+...
T Consensus       213 ~g~~~~  218 (223)
T 2f8y_A          213 YNLVRS  218 (223)
T ss_dssp             TTCSSC
T ss_pred             cCCCcc
Confidence            998754

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.3e-40  Score=265.10  Aligned_cols=213  Identities=24%  Similarity=0.315  Sum_probs=170.3

Q ss_pred             HHHcCCHHHHHHHHhcCCC-----CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHH
Q psy4998          35 AMQQGHDRVVAVLLENDTK-----GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELL  109 (318)
Q Consensus        35 A~~~g~~~~~~~ll~~~~~-----~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l  109 (318)
                      +...++.+++++|++.+..     +..+.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+..++.+++++|
T Consensus        30 ~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  109 (253)
T 1yyh_A           30 EEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQIL  109 (253)
T ss_dssp             ----------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             hhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            3344444444444444322     23444555555555666666666677777888888999999999999999999999


Q ss_pred             HhccC-CcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCC
Q psy4998         110 IQKHA-NVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKA  188 (318)
Q Consensus       110 l~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~  188 (318)
                      ++.+. +++..+..|.|||++|+..++.+++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|++++.++..
T Consensus       110 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  189 (253)
T 1yyh_A          110 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR  189 (253)
T ss_dssp             HHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence            99887 78888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCC
Q psy4998         189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ  247 (318)
Q Consensus       189 ~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  247 (318)
                      |.||||+|+..++.+++++|+++|++++.++..|.||+++|++.|+.+++++|......
T Consensus       190 g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~  248 (253)
T 1yyh_A          190 EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH  248 (253)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999887443

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=8.6e-43  Score=289.06  Aligned_cols=251  Identities=16%  Similarity=0.122  Sum_probs=209.9

Q ss_pred             cccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC---------------------ChhHH
Q psy4998           3 AQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKV---------------------KLPAL   61 (318)
Q Consensus         3 ~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~~~~---------------------~~~~l   61 (318)
                      ......++|++|+++|++++..+..|.++++     |+.+++++|++++..+..                     ..+..
T Consensus        27 ~~~~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  101 (327)
T 1sw6_A           27 IITFTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQ  101 (327)
T ss_dssp             EEECCTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-----------------------------
T ss_pred             hhhhcCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchh
Confidence            3445567899999999999999999999987     999999999998644222                     01223


Q ss_pred             HHHHhCCCHHHHHHHHhCCCCCCC-CCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCc---HH
Q psy4998          62 HIAAKKDDCKAAALLLENDHSPDV-KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGK---VA  137 (318)
Q Consensus        62 ~~A~~~~~~~~~~~ll~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~---~~  137 (318)
                      |.|+..+..++++.|++.|.+++. .+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+   .+
T Consensus       102 ~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~  181 (327)
T 1sw6_A          102 HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSG  181 (327)
T ss_dssp             --CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTT
T ss_pred             HHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHH
Confidence            667777778899999999999999 89999999999999999999999999999999999999999999999998   67


Q ss_pred             HHHHHHHcC-CCCCccCCCCChHHHHHHH----cCCHHHHHHHHHc--------------------CCCCcCCCCCCCcH
Q psy4998         138 MVELLISKG-ANIEAKTRDGLTPLHCAAR----SGHDNVIDILIEK--------------------GAALYSKTKAGFTP  192 (318)
Q Consensus       138 ~~~~L~~~~-~~~~~~~~~~~~~l~~a~~----~~~~~~~~~ll~~--------------------~~~~~~~~~~~~t~  192 (318)
                      +++.|++.+ .+++..+..|.||||+|+.    .|+.+++++|++.                    |++++..+..|.||
T Consensus       182 ~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~  261 (327)
T 1sw6_A          182 TFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDS  261 (327)
T ss_dssp             CHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CH
T ss_pred             HHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCCh
Confidence            888888875 6788999999999999999    8999999999987                    88999999999999


Q ss_pred             hHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Q psy4998         193 LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLG  266 (318)
Q Consensus       193 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  266 (318)
                      ||.|+.      +++|+++  +++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||+++|++.|
T Consensus       262 L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          262 ILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             hHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            999986      8999998  68889999999999999999999999999999999999999999999998764

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.8e-40  Score=260.62  Aligned_cols=214  Identities=26%  Similarity=0.324  Sum_probs=198.4

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCC-----CCCCChhHHHHHHhCCCHHHHHHHHhCC--CCCCC-CCCCCchHHHHHHH
Q psy4998          28 GFTPLAVAMQQGHDRVVAVLLENDT-----KGKVKLPALHIAAKKDDCKAAALLLEND--HSPDV-KSNSHFTPLHIAAH   99 (318)
Q Consensus        28 ~~t~l~~A~~~g~~~~~~~ll~~~~-----~~~~~~~~l~~A~~~~~~~~~~~ll~~~--~~~~~-~~~~~~~~l~~a~~   99 (318)
                      |.||||+|+..|+.+++++|++.+.     .+..+.||||+|+..|+.+++++|++.|  .+++. .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            6799999999999999999999754     4667899999999999999999999999  44554 67889999999999


Q ss_pred             cCCHHHHHHHHhcc--CCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHH
Q psy4998         100 YGNTNIAELLIQKH--ANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE  177 (318)
Q Consensus       100 ~~~~~~~~~ll~~~--~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~  177 (318)
                      .|+.+++++|++.+  .+++..+..|.|||+.|+..++.+++++|++.|.+++.++..|.||||+|+..|+.+++++|++
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  161 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  161 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999998  8888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC-CCCcCCCCCCCcHhHHHhhcCCHHHHHHHH-HcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhC
Q psy4998         178 KG-AALYSKTKAGFTPLHIASHFGQLNMVRYLV-ENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA  244 (318)
Q Consensus       178 ~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  244 (318)
                      .| .+++..+..|.||||+|+..++.+++++|+ ++|++++.++..|.||+++|+..   +++++|+++
T Consensus       162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~  227 (228)
T 2dzn_A          162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN  227 (228)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred             cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence            99 999999999999999999999999999999 88999999999999999999754   677777764

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=4.3e-41  Score=273.61  Aligned_cols=233  Identities=15%  Similarity=0.167  Sum_probs=212.1

Q ss_pred             CHHHHHHHHhcC--CCCCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcc
Q psy4998          40 HDRVVAVLLEND--TKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN  117 (318)
Q Consensus        40 ~~~~~~~ll~~~--~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~  117 (318)
                      ..++.++|.+.+  ..+..|.||||+|+..|+.+++++|+++|.+++..  +|.||||+|+..|+.+++++|+++|++++
T Consensus        12 ~~~v~~lL~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~   89 (285)
T 3kea_A           12 SKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDS   89 (285)
T ss_dssp             HHHHHHHHHSTTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHHhCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            445666665543  33677899999999999999999999999998877  48999999999999999999999999999


Q ss_pred             cccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCC-ChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHH
Q psy4998         118 NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG-LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIA  196 (318)
Q Consensus       118 ~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a  196 (318)
                      ..+..|.||||+|+..|+.+++++|++.|++++..+..| .||||+|+..|+.+++++|+++|.+.... ..|.||||+|
T Consensus        90 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A  168 (285)
T 3kea_A           90 QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHIT  168 (285)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHH
T ss_pred             CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHH
Confidence            999999999999999999999999999999999999999 89999999999999999999999876333 2799999999


Q ss_pred             hhcCCHHHHHHHHHcCCCCCcCCCCCCCH-HHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhh
Q psy4998         197 SHFGQLNMVRYLVENGANVNATTNLGYTP-LHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLK  275 (318)
Q Consensus       197 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~  275 (318)
                      +..|+.+++++|+++|++++.++..|.|| ||+|+..|+.+++++|+++|++++..+.       .|+..|+.+++++|.
T Consensus       169 ~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll  241 (285)
T 3kea_A          169 IKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMII  241 (285)
T ss_dssp             HHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHH
T ss_pred             HHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHH
Confidence            99999999999999999999999999998 9999999999999999999999998873       567799999999999


Q ss_pred             hccccce
Q psy4998         276 IVTETTI  282 (318)
Q Consensus       276 ~~~~~~~  282 (318)
                      ..+...-
T Consensus       242 ~~g~~~~  248 (285)
T 3kea_A          242 EKHVEYK  248 (285)
T ss_dssp             HHHHHHT
T ss_pred             HcCCCCC
Confidence            8876543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.5e-40  Score=263.16  Aligned_cols=217  Identities=26%  Similarity=0.321  Sum_probs=171.5

Q ss_pred             CccccChHHHHHHHHh----cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCChhHHHHHHhCCCHHHHHHH
Q psy4998           1 MAAQENHDGVVRYLLS----KGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALL   76 (318)
Q Consensus         1 lA~~~g~~~~v~~Ll~----~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~l   76 (318)
                      +||+.|+.++|++|++    .|.+++..+..|.||||+|+..|+.+++++|++.                          
T Consensus        15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--------------------------   68 (241)
T 1k1a_A           15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA--------------------------   68 (241)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--------------------------
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc--------------------------
Confidence            4899999999999997    7899999999999999999888777777766654                          


Q ss_pred             HhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccC----CcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCcc
Q psy4998          77 LENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHA----NVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK  152 (318)
Q Consensus        77 l~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~  152 (318)
                         |.+++..+..|.||||+|+..++.+++++|++.+.    +++..+..|.+||+.|+..|+.+++++|++.|.+++..
T Consensus        69 ---g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~  145 (241)
T 1k1a_A           69 ---GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV  145 (241)
T ss_dssp             ---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             ---CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc
Confidence               44455566677777777777777777777777766    66666677778888888888888888888888777777


Q ss_pred             C-CCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Q psy4998         153 T-RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQ  231 (318)
Q Consensus       153 ~-~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~  231 (318)
                      + ..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+.
T Consensus       146 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~  225 (241)
T 1k1a_A          146 DIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS  225 (241)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSS
T ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHh
Confidence            6 677888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCCHhHHHHHHhCCC
Q psy4998         232 QGRVLIIDLLLGAGA  246 (318)
Q Consensus       232 ~~~~~~~~~Ll~~g~  246 (318)
                      .|+.++++.|+++++
T Consensus       226 ~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          226 RRVIDILRGKATRPA  240 (241)
T ss_dssp             HHHHHHHTC------
T ss_pred             cCcHHHHhhhccCCC
Confidence            888888888877654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=5.2e-39  Score=261.49  Aligned_cols=230  Identities=25%  Similarity=0.270  Sum_probs=192.5

Q ss_pred             CCCCCChhHHHHHHhCCCHHHHHHHHhCCCC---CCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHH
Q psy4998          52 TKGKVKLPALHIAAKKDDCKAAALLLENDHS---PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLH  128 (318)
Q Consensus        52 ~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~---~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~  128 (318)
                      ..+..|.||||+|+..|+.+++++|++.|.+   ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~   83 (282)
T 1oy3_D            4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALH   83 (282)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            4567889999999999999999999999887   7788899999999999999999999999999999999999999999


Q ss_pred             HHHHcCcHHHHHHHHHcCCCCCccC-------------CCCChHHHHHHHcCC-HHHHHHHHHcCCCCcCCCCCCCcHhH
Q psy4998         129 VACKWGKVAMVELLISKGANIEAKT-------------RDGLTPLHCAARSGH-DNVIDILIEKGAALYSKTKAGFTPLH  194 (318)
Q Consensus       129 ~a~~~~~~~~~~~L~~~~~~~~~~~-------------~~~~~~l~~a~~~~~-~~~~~~ll~~~~~~~~~~~~~~t~l~  194 (318)
                      +|+..|+.+++++|++.+.+.....             ..+.++++.+...+. ......+...+.+++..+..|.||||
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  163 (282)
T 1oy3_D           84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH  163 (282)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred             HHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHH
Confidence            9999999999999999876643221             123344554444433 23333444456778888999999999


Q ss_pred             HHhhcCCHHHHHHHHHcCCCCCcCCCC-CCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q psy4998         195 IASHFGQLNMVRYLVENGANVNATTNL-GYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIET  273 (318)
Q Consensus       195 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~-g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~  273 (318)
                      +|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.+++++
T Consensus       164 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~  243 (282)
T 1oy3_D          164 VAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARL  243 (282)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHH
Confidence            999999999999999999999999864 9999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccc
Q psy4998         274 LKIVTETT  281 (318)
Q Consensus       274 l~~~~~~~  281 (318)
                      |...+...
T Consensus       244 Ll~~ga~~  251 (282)
T 1oy3_D          244 LRAHGAPE  251 (282)
T ss_dssp             HHHTTCCC
T ss_pred             HHHcCCCc
Confidence            99998874

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.1e-39  Score=258.47  Aligned_cols=217  Identities=24%  Similarity=0.332  Sum_probs=148.2

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCH
Q psy4998          24 ATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNT  103 (318)
Q Consensus        24 ~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~  103 (318)
                      .|.+|.||||+|+..|+.+++++|++.+..                         .+.+++..+..|.||||+|+..|+.
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-------------------------~~~~~~~~~~~g~t~L~~A~~~~~~   58 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKG-------------------------DLAFLNFQNNLQQTPLHLAVITNQP   58 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC------------------------------CCCCCCCCTTCCCHHHHHHHTTCH
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhc-------------------------cHHHhhccCCCCCCHHHHHHHcCCH
Confidence            445566666666666666555555543221                         1234566666677777777777777


Q ss_pred             HHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCC------CCccCCCCChHHHHHHHcCCHHHHHHHHH
Q psy4998         104 NIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGAN------IEAKTRDGLTPLHCAARSGHDNVIDILIE  177 (318)
Q Consensus       104 ~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~------~~~~~~~~~~~l~~a~~~~~~~~~~~ll~  177 (318)
                      +++++|++.|++++.++..|.||||+|+..|+.+++++|++.+.+      ++..+..|.||||+|+..|+.+++++|++
T Consensus        59 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  138 (236)
T 1ikn_D           59 EIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS  138 (236)
T ss_dssp             HHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            777777777777777666777777777777777777777776654      34556667777777777777777777777


Q ss_pred             cCCCCcCCCC-CCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCC--CCCCC
Q psy4998         178 KGAALYSKTK-AGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN--ATTNH  254 (318)
Q Consensus       178 ~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~  254 (318)
                      +|++++..+. .|.||||+|+..++.+++++|+++|++++.++..|.|||++|+..++.+++++|+++|+++.  .++..
T Consensus       139 ~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~  218 (236)
T 1ikn_D          139 LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE  218 (236)
T ss_dssp             HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCC
T ss_pred             cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccc
Confidence            7777777776 77788888887778888888887788877777777888888887788888888888877664  66677


Q ss_pred             CCCHHHHHHHc
Q psy4998         255 GQTALNIAQKL  265 (318)
Q Consensus       255 g~t~l~~A~~~  265 (318)
                      |.||.+.+...
T Consensus       219 ~~~~~~~~~~~  229 (236)
T 1ikn_D          219 DEESYDTESEF  229 (236)
T ss_dssp             TTTCCCCC---
T ss_pred             hHHHHhhhccc
Confidence            77776655443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.4e-36  Score=234.78  Aligned_cols=189  Identities=24%  Similarity=0.386  Sum_probs=133.3

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhccC-CcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcC
Q psy4998          89 SHFTPLHIAAHYGNTNIAELLIQKHA-NVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSG  167 (318)
Q Consensus        89 ~~~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~  167 (318)
                      .+.+||+.|+..|+.+.++.|+..+. +++..+..|.||||+|+..|+.+++++|++.|++++..+..+.||||+|+..+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   83 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG   83 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            34566666666666666666666555 56666666666666666666666666666666666666666677777777777


Q ss_pred             CHHHHHHHH-HcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHHcCC-----HhHHHH
Q psy4998         168 HDNVIDILI-EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENG-ANVNATTNLGYTPLHQASQQGR-----VLIIDL  240 (318)
Q Consensus       168 ~~~~~~~ll-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~-----~~~~~~  240 (318)
                      +.+++++|+ ..+.+++..+..|.||||.|+..++.+++++|+++| ++++..+..|.||||+|+..++     .+++++
T Consensus        84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~  163 (201)
T 3hra_A           84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL  163 (201)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred             CHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence            777777777 344566666777777777777777777777777776 7777777777777777777776     777777


Q ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhc
Q psy4998         241 LLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIV  277 (318)
Q Consensus       241 Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  277 (318)
                      |+++|++++.+|..|.||+++|+..|+.+++++|..+
T Consensus       164 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          164 LMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             HHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence            7777777777777777777777777777777777654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=8.5e-39  Score=253.42  Aligned_cols=198  Identities=28%  Similarity=0.322  Sum_probs=182.3

Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHhccC----CcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHH
Q psy4998          85 VKSNSHFTPLHIAAHYGNTNIAELLIQKHA----NVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPL  160 (318)
Q Consensus        85 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l  160 (318)
                      ..+..|.||||+|+..|+.+++++|++.+.    +++..+..|.||||+|+..|+.+++++|++.|++++.++..|.|||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   82 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL   82 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            457789999999999999999999988765    6788888999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCC------CcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCC-CCCCHHHHHHHcC
Q psy4998         161 HCAARSGHDNVIDILIEKGAA------LYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTN-LGYTPLHQASQQG  233 (318)
Q Consensus       161 ~~a~~~~~~~~~~~ll~~~~~------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~  233 (318)
                      |+|+..|+.+++++|++.+.+      ++..+..|.||||+|+..++.+++++|+++|++++..+. .|.||||+|+..|
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~  162 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ  162 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC
Confidence            999999999999999999875      466778899999999999999999999999999999998 9999999999999


Q ss_pred             CHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccce
Q psy4998         234 RVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETTI  282 (318)
Q Consensus       234 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~  282 (318)
                      +.+++++|+++|++++.+|..|.||+++|+..|+.+++++|...+....
T Consensus       163 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          163 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             CHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred             CHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence            9999999999999999999999999999999999999999999988754

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.5e-36  Score=234.64  Aligned_cols=191  Identities=27%  Similarity=0.371  Sum_probs=178.0

Q ss_pred             CCChhHHHHHHhCCCHHHHHHHHhCCC-CCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHc
Q psy4998          55 KVKLPALHIAAKKDDCKAAALLLENDH-SPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKW  133 (318)
Q Consensus        55 ~~~~~~l~~A~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~  133 (318)
                      ..+.|+|+.|+..|+.+.+++|+..+. +++..+..|.||||+|+..|+.+++++|++.|++++..+..|.|||++|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            356688888888888888888888776 7888899999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHH-HcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCcCCCCCCCcHhHHHhhcCC-----HHHHH
Q psy4998         134 GKVAMVELLI-SKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG-AALYSKTKAGFTPLHIASHFGQ-----LNMVR  206 (318)
Q Consensus       134 ~~~~~~~~L~-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~t~l~~a~~~~~-----~~~~~  206 (318)
                      |+.+++++|+ ..+.+++..+..|.||||+|+..++.+++++|+++| .+++.++..|.||||+|+..++     .++++
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~  162 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK  162 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence            9999999999 556788999999999999999999999999999999 8999999999999999999988     99999


Q ss_pred             HHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCC
Q psy4998         207 YLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG  245 (318)
Q Consensus       207 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g  245 (318)
                      +|+++|++++.++..|.||||+|+..|+.+++++|+++|
T Consensus       163 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            999999999999999999999999999999999999987

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=5.4e-38  Score=257.70  Aligned_cols=235  Identities=24%  Similarity=0.301  Sum_probs=200.9

Q ss_pred             CccccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHH
Q psy4998           1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALL   76 (318)
Q Consensus         1 lA~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~l   76 (318)
                      +||..|+.++|++|++.|++++..+..|.||||+|+..|+.+++++|++.+..    +..+.||||+|+..|+.+++++|
T Consensus        46 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~L  125 (299)
T 1s70_B           46 AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYL  125 (299)
T ss_dssp             HHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Confidence            38899999999999999999999999999999999999999999999998765    55688999999999999999999


Q ss_pred             HhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhc-cCCcccccCCCChHHHHHHHcCcHHHHHHHHHc-CCCCCccCC
Q psy4998          77 LENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQK-HANVNNQAKHNITPLHVACKWGKVAMVELLISK-GANIEAKTR  154 (318)
Q Consensus        77 l~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~-~~~~~~~~~  154 (318)
                      +++|.+++..+..|.|||++|+..++.+++++++.. +.+++.....+.+++        ...+..++.. .......+.
T Consensus       126 l~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~  197 (299)
T 1s70_B          126 ISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM--------LRDARQWLNSGHINDVRHAK  197 (299)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHH--------HHHHHHHHHHTCCCCCCCTT
T ss_pred             HhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHH--------HHHHHHHHhccCcchhhhcC
Confidence            999999999999999999999999999999988864 444333222222222        2233344444 444455677


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC
Q psy4998         155 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR  234 (318)
Q Consensus       155 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  234 (318)
                      .|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|++. .
T Consensus       198 ~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~-~  276 (299)
T 1s70_B          198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED-I  276 (299)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG-G
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH-H
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999999764 4


Q ss_pred             HhHHHHHHhC
Q psy4998         235 VLIIDLLLGA  244 (318)
Q Consensus       235 ~~~~~~Ll~~  244 (318)
                      .+.++.+++.
T Consensus       277 ~~~l~~l~~~  286 (299)
T 1s70_B          277 LGYLEELQKK  286 (299)
T ss_dssp             GHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555554

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.4e-37  Score=251.74  Aligned_cols=214  Identities=21%  Similarity=0.279  Sum_probs=112.7

Q ss_pred             CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCChhHHHHHHhCCCHHHHHHHHhCCCCCC----CCCCCCchH
Q psy4998          18 GGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPD----VKSNSHFTP   93 (318)
Q Consensus        18 g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~----~~~~~~~~~   93 (318)
                      |+..+..+..|.||||.|+..|+.++++.|++.                         +.+.+.+++    ..+..|.||
T Consensus         3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-------------------------~~~~~~~~~~~~~~~~~~g~tp   57 (273)
T 2pnn_A            3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPF-------------------------LQRSKKRLTDSEFKDPETGKTC   57 (273)
T ss_dssp             --------CCCHHHHHHHHHTTCSSTTTTHHHH-------------------------HHHSCCCTTSGGGSCTTTCCCH
T ss_pred             cccCCCCCcccchHHHHHHHcCCHHHHHHHHHH-------------------------HhhcccccCCcccccCcCCCCH
Confidence            444455666677777777777777766666652                         122333333    235566677


Q ss_pred             HHHHHHc---CCHHHHHHHHhccCCcc-----------cccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCC-----
Q psy4998          94 LHIAAHY---GNTNIAELLIQKHANVN-----------NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTR-----  154 (318)
Q Consensus        94 l~~a~~~---~~~~~~~~ll~~~~~~~-----------~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~-----  154 (318)
                      ||+|+..   |+.+++++|++.|++..           ..+..|.||||+|+..|+.+++++|++.|++++..+.     
T Consensus        58 L~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~  137 (273)
T 2pnn_A           58 LLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFK  137 (273)
T ss_dssp             HHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGS
T ss_pred             HHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccc
Confidence            7777765   66777777776654321           1233455555555555555555555555555555444     


Q ss_pred             ---------CCChHHHHHHHcCCHHHHHHHHH---cCCCCcCCCCCCCcHhHHHhhcCC---------HHHHHHHHHcCC
Q psy4998         155 ---------DGLTPLHCAARSGHDNVIDILIE---KGAALYSKTKAGFTPLHIASHFGQ---------LNMVRYLVENGA  213 (318)
Q Consensus       155 ---------~~~~~l~~a~~~~~~~~~~~ll~---~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~Ll~~g~  213 (318)
                               .|.||||+|+..|+.+++++|++   .|++++.++..|.||||+|+..++         .+++++|+++|+
T Consensus       138 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga  217 (273)
T 2pnn_A          138 KTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA  217 (273)
T ss_dssp             SCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhh
Confidence                     45555555555555555555555   555555555555555555555554         455555555555


Q ss_pred             CCC-------cCCCCCCCHHHHHHHcCCHhHHHHHHhCCC-CCCCCCCCCC
Q psy4998         214 NVN-------ATTNLGYTPLHQASQQGRVLIIDLLLGAGA-QPNATTNHGQ  256 (318)
Q Consensus       214 ~~~-------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~g~  256 (318)
                      +++       .++..|.||||+|+..|+.+++++|+++|+ |+......+.
T Consensus       218 ~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~  268 (273)
T 2pnn_A          218 KLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAH  268 (273)
T ss_dssp             HHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC----------
T ss_pred             hcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhh
Confidence            554       255555566666666666666666666555 4544444333

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=5.2e-36  Score=223.48  Aligned_cols=158  Identities=41%  Similarity=0.589  Sum_probs=106.2

Q ss_pred             HHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHH
Q psy4998          93 PLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVI  172 (318)
Q Consensus        93 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  172 (318)
                      +|+.|+..|+.+++++|++.|++++.++..|.||+++|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++
T Consensus         7 ~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v   86 (169)
T 4gpm_A            7 RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVV   86 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHH
Confidence            56666666666666666666666666666666666666666666666666666666666666666777777777777777


Q ss_pred             HHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCC
Q psy4998         173 DILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNA  250 (318)
Q Consensus       173 ~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~  250 (318)
                      ++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.
T Consensus        87 ~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A           87 KLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred             HHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence            777777777777777777777777777777777777777777777777777777777777777777777777776653

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=5.3e-37  Score=246.11  Aligned_cols=205  Identities=24%  Similarity=0.252  Sum_probs=144.4

Q ss_pred             CChhHHHHHHhCCCHH----HHHHHHhCCCCCCC----CCCCCchHHHHHHHc---CCHHHHHHHHhccCCcccccCCCC
Q psy4998          56 VKLPALHIAAKKDDCK----AAALLLENDHSPDV----KSNSHFTPLHIAAHY---GNTNIAELLIQKHANVNNQAKHNI  124 (318)
Q Consensus        56 ~~~~~l~~A~~~~~~~----~~~~ll~~~~~~~~----~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~  124 (318)
                      +|.|+||.|+..|+.+    ++++|++.|.+++.    .+..|.||||+|+..   |+.+++++|++.|++++..+.   
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~---   77 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP---   77 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC---
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh---
Confidence            3567777777777775    45555666777766    667777777777777   777777777777665542220   


Q ss_pred             hHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCC-------------CCc
Q psy4998         125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKA-------------GFT  191 (318)
Q Consensus       125 ~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-------------~~t  191 (318)
                                       ++.  ......+..|.||||+|+..|+.+++++|+++|++++..+..             |.|
T Consensus        78 -----------------~~~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~t  138 (256)
T 2etb_A           78 -----------------LVN--AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGEL  138 (256)
T ss_dssp             -----------------GGG--CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSS
T ss_pred             -----------------hcc--cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCC
Confidence                             000  001112234555555555555555555555555555544443             888


Q ss_pred             HhHHHhhcCCHHHHHHHHH---cCCCCCcCCCCCCCHHHHHHH--cCCHh-------HHHHHHhCCCCC-------CCCC
Q psy4998         192 PLHIASHFGQLNMVRYLVE---NGANVNATTNLGYTPLHQASQ--QGRVL-------IIDLLLGAGAQP-------NATT  252 (318)
Q Consensus       192 ~l~~a~~~~~~~~~~~Ll~---~g~~~~~~~~~g~t~l~~A~~--~~~~~-------~~~~Ll~~g~~~-------~~~~  252 (318)
                      |||+|+..|+.+++++|++   +|++++.++..|.||||+|+.  .++.+       ++++|+++|+++       +.+|
T Consensus       139 pL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d  218 (256)
T 2etb_A          139 PLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISN  218 (256)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCC
T ss_pred             HHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccC
Confidence            9999999899999999998   888998888889999999988  77777       889999998888       8888


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHhhhccccce
Q psy4998         253 NHGQTALNIAQKLGYISVIETLKIVTETTI  282 (318)
Q Consensus       253 ~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~  282 (318)
                      ..|.||+++|+..|+.+++++|...+....
T Consensus       219 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  248 (256)
T 2etb_A          219 HQGLTPLKLAAKEGKIEIFRHILQREFSGA  248 (256)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence            889999999999999999999888766543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2e-35  Score=220.37  Aligned_cols=156  Identities=38%  Similarity=0.580  Sum_probs=150.5

Q ss_pred             hHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHH
Q psy4998         125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNM  204 (318)
Q Consensus       125 ~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  204 (318)
                      +.|+.|+..|+.+++++|++.|++++.++..|.|||++|+..++.+++++|++.|++++.++..|.||||+|+..|+.++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcccc
Q psy4998         205 VRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTET  280 (318)
Q Consensus       205 ~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  280 (318)
                      +++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|++.|+.+++++|.+.+..
T Consensus        86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~  161 (169)
T 4gpm_A           86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW  161 (169)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred             HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.4e-36  Score=243.64  Aligned_cols=202  Identities=22%  Similarity=0.209  Sum_probs=164.1

Q ss_pred             CCCCHHHHHHHcCCHH----HHHHHHhcCC--------CCCCChhHHHHHHhC---CCHHHHHHHHhCCCCCCCCC----
Q psy4998          27 DGFTPLAVAMQQGHDR----VVAVLLENDT--------KGKVKLPALHIAAKK---DDCKAAALLLENDHSPDVKS----   87 (318)
Q Consensus        27 ~~~t~l~~A~~~g~~~----~~~~ll~~~~--------~~~~~~~~l~~A~~~---~~~~~~~~ll~~~~~~~~~~----   87 (318)
                      .|.||||.|+..|+.+    ++++|++.+.        .+..|.||||+|+..   |+.+++++|++.|.+++..+    
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            3789999999999997    5666666664        356789999999999   99999999999988766433    


Q ss_pred             -------CCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHH
Q psy4998          88 -------NSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPL  160 (318)
Q Consensus        88 -------~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l  160 (318)
                             ..|.||||+|+..|+.+++++|+++|++++..+..+..                    ..+....+..|.|||
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~--------------------~~~~~~~~~~g~tpL  140 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFF--------------------QKHQGTCFYFGELPL  140 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGG--------------------SCCSSSCCCSCSSHH
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccc--------------------cccccccccCCCCHH
Confidence                   56778888888888888888888888777766654321                    122233344588888


Q ss_pred             HHHHHcCCHHHHHHHHH---cCCCCcCCCCCCCcHhHHHhh--cCCHH-------HHHHHHHcCCCC-------CcCCCC
Q psy4998         161 HCAARSGHDNVIDILIE---KGAALYSKTKAGFTPLHIASH--FGQLN-------MVRYLVENGANV-------NATTNL  221 (318)
Q Consensus       161 ~~a~~~~~~~~~~~ll~---~~~~~~~~~~~~~t~l~~a~~--~~~~~-------~~~~Ll~~g~~~-------~~~~~~  221 (318)
                      |+|+..|+.+++++|++   +|++++.++..|.||||+|+.  .++.+       ++++|+++|+++       +.++..
T Consensus       141 ~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~  220 (256)
T 2etb_A          141 SLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQ  220 (256)
T ss_dssp             HHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTT
T ss_pred             HHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCC
Confidence            88888888888888888   888888888888999998888  77777       999999999998       888999


Q ss_pred             CCCHHHHHHHcCCHhHHHHHHhCCCCC
Q psy4998         222 GYTPLHQASQQGRVLIIDLLLGAGAQP  248 (318)
Q Consensus       222 g~t~l~~A~~~~~~~~~~~Ll~~g~~~  248 (318)
                      |.||||+|+..|+.+++++|+++|.++
T Consensus       221 g~tpL~~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          221 GLTPLKLAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence            999999999999999999999987654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=2.6e-37  Score=256.16  Aligned_cols=223  Identities=15%  Similarity=0.106  Sum_probs=180.4

Q ss_pred             cccChHHHHHHHHhcCCCCCcC-----------------CCCCCCHHHHHHHcCCHHHHHHHHhcCC-----CCCCChhH
Q psy4998           3 AQENHDGVVRYLLSKGGNQTLA-----------------TEDGFTPLAVAMQQGHDRVVAVLLENDT-----KGKVKLPA   60 (318)
Q Consensus         3 ~~~g~~~~v~~Ll~~g~~~~~~-----------------~~~~~t~l~~A~~~g~~~~~~~ll~~~~-----~~~~~~~~   60 (318)
                      +..|+.++|++|+++|++++..                 .....+.+|.|+..+..+++++|++.+.     .+..|.||
T Consensus        55 ~~~g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~Tp  134 (327)
T 1sw6_A           55 NDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTP  134 (327)
T ss_dssp             CCHHHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCH
T ss_pred             ccCchhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcH
Confidence            4568999999999999886651                 1112233578888888899999998765     46678999


Q ss_pred             HHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCC---HHHHHHHHhcc-CCcccccCCCChHHHHHHH----
Q psy4998          61 LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGN---TNIAELLIQKH-ANVNNQAKHNITPLHVACK----  132 (318)
Q Consensus        61 l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~ll~~~-~~~~~~~~~~~~~l~~a~~----  132 (318)
                      ||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+   .++++.|++.+ .+++..+..|.||||+|+.    
T Consensus       135 Lh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~  214 (327)
T 1sw6_A          135 LHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGM  214 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTS
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccc
Confidence            999999999999999999999999999999999999999998   67888888876 6788899999999999999    


Q ss_pred             cCcHHHHHHHHHc--------------------CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcH
Q psy4998         133 WGKVAMVELLISK--------------------GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTP  192 (318)
Q Consensus       133 ~~~~~~~~~L~~~--------------------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~  192 (318)
                      .|+.+++++|++.                    |++++..+..|.|||+.|+.      +++|+++  +++.++..|+||
T Consensus       215 ~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~Tp  286 (327)
T 1sw6_A          215 TGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTC  286 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH--TTTCCCTTSCCH
T ss_pred             cccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCH
Confidence            8999999999987                    88899999999999999986      8899988  578899999999


Q ss_pred             hHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Q psy4998         193 LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG  233 (318)
Q Consensus       193 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  233 (318)
                      ||+|+..|+.+++++|+++|++++.++..|.||||+|++.|
T Consensus       287 Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          287 LNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            99999999999999999999999999999999999998764

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=4e-36  Score=243.27  Aligned_cols=206  Identities=21%  Similarity=0.246  Sum_probs=175.4

Q ss_pred             CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhc----cCCcc----cccCCCChHHHHHHHc---CcHHHHHHHHHcCCC
Q psy4998          80 DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQK----HANVN----NQAKHNITPLHVACKW---GKVAMVELLISKGAN  148 (318)
Q Consensus        80 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~----~~~~~----~~~~~~~~~l~~a~~~---~~~~~~~~L~~~~~~  148 (318)
                      ++..+..+..|.||||.|+..|+.++++.|++.    +.+++    ..+..|.||||+|+..   |+.+++++|++.|.+
T Consensus         3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~   82 (273)
T 2pnn_A            3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK   82 (273)
T ss_dssp             --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred             cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc
Confidence            344566788899999999999999988888874    44443    3467899999999986   999999999998754


Q ss_pred             C-----------CccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCC--------------CCCcHhHHHhhcCCHH
Q psy4998         149 I-----------EAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTK--------------AGFTPLHIASHFGQLN  203 (318)
Q Consensus       149 ~-----------~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~--------------~~~t~l~~a~~~~~~~  203 (318)
                      .           ...+..|.||||+|+..|+.+++++|+++|++++..+.              .|.||||+|+..++.+
T Consensus        83 ~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~  162 (273)
T 2pnn_A           83 TDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA  162 (273)
T ss_dssp             TTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHH
T ss_pred             ccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHH
Confidence            2           22566899999999999999999999999999998886              7999999999999999


Q ss_pred             HHHHHHH---cCCCCCcCCCCCCCHHHHHHHcCC---------HhHHHHHHhCCCCCC-------CCCCCCCCHHHHHHH
Q psy4998         204 MVRYLVE---NGANVNATTNLGYTPLHQASQQGR---------VLIIDLLLGAGAQPN-------ATTNHGQTALNIAQK  264 (318)
Q Consensus       204 ~~~~Ll~---~g~~~~~~~~~g~t~l~~A~~~~~---------~~~~~~Ll~~g~~~~-------~~~~~g~t~l~~A~~  264 (318)
                      ++++|++   +|++++.++..|.||||+|+..|+         .+++++|+++|++++       .+|..|.|||++|+.
T Consensus       163 ~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~  242 (273)
T 2pnn_A          163 IVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAAS  242 (273)
T ss_dssp             HHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             HHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHH
Confidence            9999999   999999999999999999999988         899999999999997       489999999999999


Q ss_pred             cCCHHHHHHhhhccccceecc
Q psy4998         265 LGYISVIETLKIVTETTIVTT  285 (318)
Q Consensus       265 ~~~~~~~~~l~~~~~~~~~~~  285 (318)
                      .|+.+++++|...+.......
T Consensus       243 ~g~~~iv~~Ll~~ga~dp~~~  263 (273)
T 2pnn_A          243 SGKIGVLAYILQREIHEPECR  263 (273)
T ss_dssp             TTCHHHHHHHHHHHTC-----
T ss_pred             hChHHHHHHHHHCCCCCchhh
Confidence            999999999999988543333

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=5.5e-35  Score=234.89  Aligned_cols=206  Identities=22%  Similarity=0.247  Sum_probs=142.2

Q ss_pred             CCChhHHHHHHhCCCHHHHHH----HHhCCCCCCCCC----CCCchHHHHHH---HcCCHHHHHHHHhccCCcccccCCC
Q psy4998          55 KVKLPALHIAAKKDDCKAAAL----LLENDHSPDVKS----NSHFTPLHIAA---HYGNTNIAELLIQKHANVNNQAKHN  123 (318)
Q Consensus        55 ~~~~~~l~~A~~~~~~~~~~~----ll~~~~~~~~~~----~~~~~~l~~a~---~~~~~~~~~~ll~~~~~~~~~~~~~  123 (318)
                      .++.++|+.|+..|+.+.++.    +++.+.+++..+    ..|.||||+|+   ..|+.+++++|++.+.+.....   
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~---   79 (260)
T 3jxi_A            3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR---   79 (260)
T ss_dssp             CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH---
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH---
Confidence            345666666666666664333    333666655443    44666666666   4566666666666654322100   


Q ss_pred             ChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCC--------------CCC
Q psy4998         124 ITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT--------------KAG  189 (318)
Q Consensus       124 ~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~--------------~~~  189 (318)
                                       .+  ........+..|.||||+|+..|+.+++++|+++|++++..+              ..|
T Consensus        80 -----------------~~--~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g  140 (260)
T 3jxi_A           80 -----------------EF--INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFG  140 (260)
T ss_dssp             -----------------HH--HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSC
T ss_pred             -----------------hh--hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCC
Confidence                             00  012233344466677777777777777777777777766666              578


Q ss_pred             CcHhHHHhhcCCHHHHHHHHH---cCCCCCcCCCCCCCHHHHHHHcCC---------HhHHHHHHhCCCCC-------CC
Q psy4998         190 FTPLHIASHFGQLNMVRYLVE---NGANVNATTNLGYTPLHQASQQGR---------VLIIDLLLGAGAQP-------NA  250 (318)
Q Consensus       190 ~t~l~~a~~~~~~~~~~~Ll~---~g~~~~~~~~~g~t~l~~A~~~~~---------~~~~~~Ll~~g~~~-------~~  250 (318)
                      .||||+|+..|+.+++++|++   +|++++.++..|.||||+|+..++         .+++++|+++|+++       +.
T Consensus       141 ~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~  220 (260)
T 3jxi_A          141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEAL  220 (260)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhc
Confidence            888888888888888888888   888888888888888888887776         68888888888887       56


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHhhhccccce
Q psy4998         251 TTNHGQTALNIAQKLGYISVIETLKIVTETTI  282 (318)
Q Consensus       251 ~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~  282 (318)
                      +|..|.|||++|++.|+.+++++|.+.+....
T Consensus       221 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          221 LNNDGLSPLMMAAKTGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence            88888888888888888888888887766543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=7.3e-35  Score=234.21  Aligned_cols=206  Identities=22%  Similarity=0.208  Sum_probs=151.1

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh----cCCC--------CCCChhHHHHHH---hCCCHHHHHHHHhCCCCC------
Q psy4998          25 TEDGFTPLAVAMQQGHDRVVAVLLE----NDTK--------GKVKLPALHIAA---KKDDCKAAALLLENDHSP------   83 (318)
Q Consensus        25 ~~~~~t~l~~A~~~g~~~~~~~ll~----~~~~--------~~~~~~~l~~A~---~~~~~~~~~~ll~~~~~~------   83 (318)
                      +..+.++||.|+..|+.+.++.|++    .+..        +..|.||||+|+   ..|+.+++++|++.|.++      
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            4567899999999999996555554    5443        245889999999   779999999999987542      


Q ss_pred             -----CCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCh
Q psy4998          84 -----DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLT  158 (318)
Q Consensus        84 -----~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~  158 (318)
                           +..+..|.||||+|+..|+.+++++|+++|++++..+..+..                   ...+....+..|.|
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~-------------------~~~~~~~~~~~g~t  142 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFF-------------------QPKDEGGYFYFGEL  142 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCC-------------------SSSCCCCSCCSCSS
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcccccccc-------------------CcccccccccCCCC
Confidence                 222335556666666666666666666665555544421100                   00111122256888


Q ss_pred             HHHHHHHcCCHHHHHHHHH---cCCCCcCCCCCCCcHhHHHhhcCC---------HHHHHHHHHcCCCC-------CcCC
Q psy4998         159 PLHCAARSGHDNVIDILIE---KGAALYSKTKAGFTPLHIASHFGQ---------LNMVRYLVENGANV-------NATT  219 (318)
Q Consensus       159 ~l~~a~~~~~~~~~~~ll~---~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~Ll~~g~~~-------~~~~  219 (318)
                      |||+|+..|+.+++++|++   .|++++.++..|.||||+|+..++         .+++++|+++|+++       +..+
T Consensus       143 pL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d  222 (260)
T 3jxi_A          143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLN  222 (260)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCC
T ss_pred             HHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhccc
Confidence            8888888888888888888   788888888888888888887766         68889999998888       6688


Q ss_pred             CCCCCHHHHHHHcCCHhHHHHHHhCCCCCC
Q psy4998         220 NLGYTPLHQASQQGRVLIIDLLLGAGAQPN  249 (318)
Q Consensus       220 ~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~  249 (318)
                      ..|.||||+|+..|+.+++++|+++|.++.
T Consensus       223 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          223 NDGLSPLMMAAKTGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence            889999999999999999999999887654

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=7.6e-34  Score=229.75  Aligned_cols=188  Identities=23%  Similarity=0.290  Sum_probs=174.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHhccCC--cccccCCCChHHHHHHHcCcHHHHHHHHHcCC-CCCccCCCCChHHHHHH----
Q psy4998          92 TPLHIAAHYGNTNIAELLIQKHAN--VNNQAKHNITPLHVACKWGKVAMVELLISKGA-NIEAKTRDGLTPLHCAA----  164 (318)
Q Consensus        92 ~~l~~a~~~~~~~~~~~ll~~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~-~~~~~~~~~~~~l~~a~----  164 (318)
                      +++|.|+..++.+.++.+++.+.+  ++..+..|.||||+|+..|+.+++++|++.|. +++..+..|.|||++|+    
T Consensus        78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~  157 (276)
T 4hbd_A           78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL  157 (276)
T ss_dssp             TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence            567888899999999999887665  77788899999999999999999999999997 89999999999999999    


Q ss_pred             -HcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHh
Q psy4998         165 -RSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG  243 (318)
Q Consensus       165 -~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  243 (318)
                       ..++.+++++|++.|...+..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus       158 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  237 (276)
T 4hbd_A          158 KTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLA  237 (276)
T ss_dssp             CSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             hhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh
Confidence             6688999999999999888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             -CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccc
Q psy4998         244 -AGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTE  279 (318)
Q Consensus       244 -~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  279 (318)
                       .|++++.+|..|.||+++|+..|+.+++++|.....
T Consensus       238 ~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          238 VPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             STTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             cCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence             899999999999999999999999999999987643

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=3.7e-33  Score=213.89  Aligned_cols=162  Identities=35%  Similarity=0.424  Sum_probs=136.5

Q ss_pred             ccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHH
Q psy4998         117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIA  196 (318)
Q Consensus       117 ~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a  196 (318)
                      +.++..|.||||.|+..|+.+++++|++.+.+++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  108 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS  108 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            44566777888888888888888888887777777777888888888888888888888888888888888888888888


Q ss_pred             hhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhh
Q psy4998         197 SHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKI  276 (318)
Q Consensus       197 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~  276 (318)
                      +..++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.+++++|..
T Consensus       109 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  188 (192)
T 2rfm_A          109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE  188 (192)
T ss_dssp             HHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHh
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888876


Q ss_pred             cc
Q psy4998         277 VT  278 (318)
Q Consensus       277 ~~  278 (318)
                      ..
T Consensus       189 ~~  190 (192)
T 2rfm_A          189 VR  190 (192)
T ss_dssp             HH
T ss_pred             cc
Confidence            53

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=3.8e-34  Score=231.52  Aligned_cols=187  Identities=18%  Similarity=0.221  Sum_probs=176.5

Q ss_pred             hHHHHHHhCCCHHHHHHHHhCCCC--CCCCCCCCchHHHHHHHcCCHHHHHHHHhccC-CcccccCCCChHHHHHH----
Q psy4998          59 PALHIAAKKDDCKAAALLLENDHS--PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHA-NVNNQAKHNITPLHVAC----  131 (318)
Q Consensus        59 ~~l~~A~~~~~~~~~~~ll~~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~l~~a~----  131 (318)
                      +++|.|+..++.+.++.+++.+.+  ++..|..|.||||+|+..|+.+++++|++.|+ +++..+..|.||++.|+    
T Consensus        78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~  157 (276)
T 4hbd_A           78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL  157 (276)
T ss_dssp             TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence            567788888999999998877655  78889999999999999999999999999998 99999999999999999    


Q ss_pred             -HcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHH
Q psy4998         132 -KWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE  210 (318)
Q Consensus       132 -~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  210 (318)
                       ..++.+++++|++.|...+..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++
T Consensus       158 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  237 (276)
T 4hbd_A          158 KTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLA  237 (276)
T ss_dssp             CSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             hhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh
Confidence             6789999999999999998889999999999999999999999999999999999999999999999999999999999


Q ss_pred             -cCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCC
Q psy4998         211 -NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG  245 (318)
Q Consensus       211 -~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g  245 (318)
                       .|++++.+|..|.||||+|+..|+.+++++|++++
T Consensus       238 ~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          238 VPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             STTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             cCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence             89999999999999999999999999999999873

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=3.4e-33  Score=210.23  Aligned_cols=168  Identities=21%  Similarity=0.295  Sum_probs=105.5

Q ss_pred             chHHHHHHHcCCHHHHHHHHhccCC-cccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCH
Q psy4998          91 FTPLHIAAHYGNTNIAELLIQKHAN-VNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHD  169 (318)
Q Consensus        91 ~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~  169 (318)
                      .+|||.|+..|+.+++++|++.+.. ++..+..|.||||.|+..|+.+++++|++.|.+++..+..+.||||+|+..++.
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   82 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT   82 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCH
Confidence            3566666666666666666666554 455555666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCC
Q psy4998         170 NVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN  249 (318)
Q Consensus       170 ~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~  249 (318)
                      +++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++.
T Consensus        83 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (172)
T 3v30_A           83 DIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLF  162 (172)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCCCCCCCH
Q psy4998         250 ATTNHGQTA  258 (318)
Q Consensus       250 ~~~~~g~t~  258 (318)
                      .++..|.||
T Consensus       163 ~~~~~~~~p  171 (172)
T 3v30_A          163 QSNLVPADP  171 (172)
T ss_dssp             CC-------
T ss_pred             cccCCCCCC
Confidence            666655554

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=2.4e-32  Score=204.94  Aligned_cols=156  Identities=37%  Similarity=0.583  Sum_probs=128.2

Q ss_pred             CCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCC
Q psy4998         122 HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQ  201 (318)
Q Consensus       122 ~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~  201 (318)
                      .+.++++.|+..|+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++
T Consensus        13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   92 (169)
T 2y1l_E           13 DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGH   92 (169)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            44567777888888888888887777777777778888888888888888888888888887788888888888888888


Q ss_pred             HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhc
Q psy4998         202 LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIV  277 (318)
Q Consensus       202 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  277 (318)
                      .+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.+++++|.++
T Consensus        93 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E           93 LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            8888888888888888888888888888888888888888888888888888888888888888888888888764

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=1.2e-32  Score=210.97  Aligned_cols=162  Identities=28%  Similarity=0.411  Sum_probs=152.4

Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHH
Q psy4998          84 DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCA  163 (318)
Q Consensus        84 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a  163 (318)
                      +..+..|.||||+|+..|+.+++++|++.+.+++..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||||+|
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  108 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS  108 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            56788899999999999999999999999999998888999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHh
Q psy4998         164 ARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG  243 (318)
Q Consensus       164 ~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  243 (318)
                      +..++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..|+.+++++|++
T Consensus       109 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  188 (192)
T 2rfm_A          109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE  188 (192)
T ss_dssp             HHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC
Q psy4998         244 AG  245 (318)
Q Consensus       244 ~g  245 (318)
                      +|
T Consensus       189 ~~  190 (192)
T 2rfm_A          189 VR  190 (192)
T ss_dssp             HH
T ss_pred             cc
Confidence            64

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=2.5e-32  Score=204.52  Aligned_cols=159  Identities=28%  Similarity=0.389  Sum_probs=129.0

Q ss_pred             CCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCC
Q psy4998         122 HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQ  201 (318)
Q Consensus       122 ~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~  201 (318)
                      .|.||||.|+..|+.+++++|++.+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            35677777777777777777777777777777777788888888888888888888887777777888888888888888


Q ss_pred             HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcccc
Q psy4998         202 LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTET  280 (318)
Q Consensus       202 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  280 (318)
                      .+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|+..|+.+++++|......
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~  160 (167)
T 3v31_A           82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK  160 (167)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888888888888888888888888888888766543

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=2.3e-32  Score=203.69  Aligned_cols=156  Identities=31%  Similarity=0.410  Sum_probs=91.0

Q ss_pred             chHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHH
Q psy4998          91 FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDN  170 (318)
Q Consensus        91 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~  170 (318)
                      .+||+.|+..|+.+++++|++.+.+++..+..|.|||++|+. |+.+++++|++.|.+++.++..|.||||+|+..++.+
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   84 (162)
T 1ihb_A            6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD   84 (162)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             hhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            355555555555555555555555555555555555555555 5555555555555555555555555555555555556


Q ss_pred             HHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCC
Q psy4998         171 VIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN-VNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ  247 (318)
Q Consensus       171 ~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  247 (318)
                      ++++|+++|++++.++..|.||||+|+..++.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|+++|+|
T Consensus        85 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A           85 TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            66666655555555555566666666666666666666666555 355555566666666666666666666666553

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=6.3e-32  Score=202.60  Aligned_cols=159  Identities=33%  Similarity=0.538  Sum_probs=136.3

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHc
Q psy4998          87 SNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARS  166 (318)
Q Consensus        87 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~  166 (318)
                      ...+.++|+.|+..|+.+++++|++.|.+++..+..|.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+..
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   90 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF   90 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            34456788888888888888888888888887777888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCC
Q psy4998         167 GHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG  245 (318)
Q Consensus       167 ~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g  245 (318)
                      ++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.|||++|+..|+.+++++|+++|
T Consensus        91 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E           91 GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            8888889888888888888888999999999999999999999999999999999999999999999999999998876

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=7.9e-32  Score=198.71  Aligned_cols=151  Identities=32%  Similarity=0.459  Sum_probs=135.1

Q ss_pred             ChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHH
Q psy4998         124 ITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLN  203 (318)
Q Consensus       124 ~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  203 (318)
                      .++|+.|+..|+.+++++|++.|.+++ .+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   81 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence            367888888888888888888877665 5677888888888888888888888888888888888999999999999999


Q ss_pred             HHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhh
Q psy4998         204 MVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLK  275 (318)
Q Consensus       204 ~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~  275 (318)
                      ++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.+++++|+
T Consensus        82 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~  153 (153)
T 1awc_B           82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ  153 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999884

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=4.8e-32  Score=202.93  Aligned_cols=160  Identities=23%  Similarity=0.329  Sum_probs=142.5

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCC
Q psy4998          89 SHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGH  168 (318)
Q Consensus        89 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~  168 (318)
                      .|.||||.|+..|+.+++++|++.+.+++..+..|.||||+|+..|+.+++++|++.|.+++..+..+.||||.|+..++
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            36688888888888888888888888888888888888888888888888888888888888888888899999999999


Q ss_pred             HHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCC
Q psy4998         169 DNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP  248 (318)
Q Consensus       169 ~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~  248 (318)
                      .+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..|+.+++++|++++.++
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (167)
T 3v31_A           82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL  161 (167)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            99999999999999988999999999999999999999999999999999999999999999999999999999886554

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=100.00  E-value=1.3e-35  Score=248.22  Aligned_cols=248  Identities=15%  Similarity=0.095  Sum_probs=163.1

Q ss_pred             cChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-------CCCChhHHHHHHhCCCHHHHHHHH
Q psy4998           5 ENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK-------GKVKLPALHIAAKKDDCKAAALLL   77 (318)
Q Consensus         5 ~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~-------~~~~~~~l~~A~~~~~~~~~~~ll   77 (318)
                      .++.++++++++.|.+       +.||||+|+..|+.+++++|++.+..       +..+.||||+|+..|+.+++++|+
T Consensus        76 ~~~~~~~~~l~~~g~~-------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll  148 (376)
T 2aja_A           76 RNAKQLWSDAHKKGIK-------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC  148 (376)
T ss_dssp             TTCTTHHHHHHHHTCC-------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCC-------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHH
Confidence            4667777788777765       34899999999999999999888652       234567999999999999999999


Q ss_pred             hCCCCC---CCCCCCCchHHHHHHHcCCHHHHHHHHhccCCccc--ccCCCChHHHHHH-HcCcHHHHHHHHHcCCCCCc
Q psy4998          78 ENDHSP---DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN--QAKHNITPLHVAC-KWGKVAMVELLISKGANIEA  151 (318)
Q Consensus        78 ~~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~--~~~~~~~~l~~a~-~~~~~~~~~~L~~~~~~~~~  151 (318)
                      ++|+++   +..+.+ .||||+|+..|+.+++++|+++|++++.  .+..|.||||+|+ ..|+.+++++|++.|.    
T Consensus       149 ~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga----  223 (376)
T 2aja_A          149 ELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV----  223 (376)
T ss_dssp             HSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH----
T ss_pred             hCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC----
Confidence            988642   222222 7899999999999999999998888766  6677888999999 8999999999988653    


Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcC---------------------------CHHH
Q psy4998         152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFG---------------------------QLNM  204 (318)
Q Consensus       152 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~---------------------------~~~~  204 (318)
                         .+.|||+.|+..|+.+++++|+++|++++..+.    +++.|+..|                           ..+.
T Consensus       224 ---~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~----~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~  296 (376)
T 2aja_A          224 ---MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHD----AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDD  296 (376)
T ss_dssp             ---HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHT----TTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHH
T ss_pred             ---ccchHHHHHHHCCCHHHHHHHHhcCcccccccH----HHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHH
Confidence               267889999999998899999888766543221    222222222                           3445


Q ss_pred             HHHHHHcCC-----CCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHh
Q psy4998         205 VRYLVENGA-----NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL  274 (318)
Q Consensus       205 ~~~Ll~~g~-----~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  274 (318)
                      +++|++.+.     +.......+.|||++|+..|+.+++++|++.|   ..++..++|++.+|...|..++++.-
T Consensus       297 ~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~  368 (376)
T 2aja_A          297 IRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRAVA  368 (376)
T ss_dssp             HHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC-------------------
T ss_pred             HHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHHHH
Confidence            555554321     01111223567888888888888888888764   55567778888888888887776654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=9e-32  Score=200.44  Aligned_cols=157  Identities=25%  Similarity=0.363  Sum_probs=150.5

Q ss_pred             CCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCC
Q psy4998         122 HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQ  201 (318)
Q Consensus       122 ~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~  201 (318)
                      ...+||+.|+..|+.+++++|++.|.+++..+..|.||||+|+. |+.+++++|+++|++++.++..|.||||+|+..++
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            45689999999999999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHhhhccc
Q psy4998         202 LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ-PNATTNHGQTALNIAQKLGYISVIETLKIVTE  279 (318)
Q Consensus       202 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  279 (318)
                      .+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++ ++..+..|.||+++|+..|+.+++++|...+.
T Consensus        83 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A           83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999998 59999999999999999999999999988764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=5.9e-32  Score=203.44  Aligned_cols=168  Identities=22%  Similarity=0.344  Sum_probs=138.8

Q ss_pred             hhHHHHHHhCCCHHHHHHHHhCCCC-CCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcH
Q psy4998          58 LPALHIAAKKDDCKAAALLLENDHS-PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKV  136 (318)
Q Consensus        58 ~~~l~~A~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~  136 (318)
                      .++|+.|+..|+.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   82 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT   82 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCH
Confidence            4677777777778888887777766 667778888889998888888888988888888888888888899999888899


Q ss_pred             HHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCC
Q psy4998         137 AMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVN  216 (318)
Q Consensus       137 ~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~  216 (318)
                      +++++|++.|.+++.++..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..++.+++++|+++|+++.
T Consensus        83 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (172)
T 3v30_A           83 DIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLF  162 (172)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence            99999998888888888888899999999999999999999998888888889999999999999999999999888888


Q ss_pred             cCCCCCCCH
Q psy4998         217 ATTNLGYTP  225 (318)
Q Consensus       217 ~~~~~g~t~  225 (318)
                      ..+..|.||
T Consensus       163 ~~~~~~~~p  171 (172)
T 3v30_A          163 QSNLVPADP  171 (172)
T ss_dssp             CC-------
T ss_pred             cccCCCCCC
Confidence            777777766

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=2.3e-31  Score=201.45  Aligned_cols=163  Identities=31%  Similarity=0.479  Sum_probs=96.4

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhc-cCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCC
Q psy4998          90 HFTPLHIAAHYGNTNIAELLIQK-HANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGH  168 (318)
Q Consensus        90 ~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~  168 (318)
                      +.++|+.|+..|+.+++++|++. +.+++..+..|.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+..++
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   84 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH   84 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence            34555555555555555555555 33455555555555555555555555555555555555555556666666666666


Q ss_pred             HHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCC
Q psy4998         169 DNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP  248 (318)
Q Consensus       169 ~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~  248 (318)
                      .+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..++.+++++|+++|+++
T Consensus        85 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~  164 (179)
T 3f6q_A           85 RDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL  164 (179)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCc
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666665


Q ss_pred             CCCC
Q psy4998         249 NATT  252 (318)
Q Consensus       249 ~~~~  252 (318)
                      +..+
T Consensus       165 ~~~~  168 (179)
T 3f6q_A          165 NRIP  168 (179)
T ss_dssp             SCBC
T ss_pred             ccCC
Confidence            5443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=2.1e-34  Score=226.26  Aligned_cols=198  Identities=22%  Similarity=0.262  Sum_probs=146.8

Q ss_pred             HHHHhCCCCCCCCC---CCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCC
Q psy4998          74 ALLLENDHSPDVKS---NSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE  150 (318)
Q Consensus        74 ~~ll~~~~~~~~~~---~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~  150 (318)
                      +.|++++.+++..+   ..+.|||+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n   81 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVN   81 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            45666666655433   345667788888888888888888888887777788888888888888888888888888888


Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCC-CCCCcHhHHH--hhcCCHHHHHHHHHcCCCCCcCCCCCCCHHH
Q psy4998         151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT-KAGFTPLHIA--SHFGQLNMVRYLVENGANVNATTNLGYTPLH  227 (318)
Q Consensus       151 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~t~l~~a--~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~  227 (318)
                      ..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|  +..++.+++++|+++|++++..+..|.||++
T Consensus        82 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~  161 (229)
T 2vge_A           82 SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALW  161 (229)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESS
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHH
Confidence            888888888888888888888888888888887775 5788888888  7888888888888888888888777777777


Q ss_pred             HHHHcCCHhHHHHHHhCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHh
Q psy4998         228 QASQQGRVLIIDLLLGAGAQ--PNATTNHGQTALNIAQKLGYISVIETL  274 (318)
Q Consensus       228 ~A~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~~~~l  274 (318)
                      .+...+..   ++|++.|++  ++.+|..|.|||++|+..|+.++|+..
T Consensus       162 ~~~~~~~~---~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~  207 (229)
T 2vge_A          162 DYSAEFGD---ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRN  207 (229)
T ss_dssp             CBCCSSTT---BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred             HHhhcccc---ccCccccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence            54444332   566777877  566788888888888888888877653

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=1.2e-30  Score=192.27  Aligned_cols=150  Identities=27%  Similarity=0.456  Sum_probs=129.4

Q ss_pred             chHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHH
Q psy4998          91 FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDN  170 (318)
Q Consensus        91 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~  170 (318)
                      .++|+.|+..|+.+++++|++.+.+++ .+..|.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+..++.+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   81 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence            467888888888888888888877665 4667888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHH
Q psy4998         171 VIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL  241 (318)
Q Consensus       171 ~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  241 (318)
                      ++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.|||++|+..|+.+++++|
T Consensus        82 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            88888888888888888899999999999999999999999999999999999999999999999999886

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.8e-34  Score=226.67  Aligned_cols=194  Identities=22%  Similarity=0.178  Sum_probs=170.7

Q ss_pred             HHHHhcCCC-------CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcc
Q psy4998          45 AVLLENDTK-------GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN  117 (318)
Q Consensus        45 ~~ll~~~~~-------~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~  117 (318)
                      +.|++.+..       +..+.|+|+.|+..|+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|++.|++++
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n   81 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVN   81 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            455655433       3456789999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccC-CCCChHHHHH--HHcCCHHHHHHHHHcCCCCcCCCCCCCcHhH
Q psy4998         118 NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKT-RDGLTPLHCA--ARSGHDNVIDILIEKGAALYSKTKAGFTPLH  194 (318)
Q Consensus       118 ~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~l~~a--~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~  194 (318)
                      ..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.|||++|  +..++.+++++|++.|++++..+..+.+|++
T Consensus        82 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~  161 (229)
T 2vge_A           82 SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALW  161 (229)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESS
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHH
Confidence            999999999999999999999999999999999886 6999999999  9999999999999999999999999999998


Q ss_pred             HHhhcCCHHHHHHHHHcCCC--CCcCCCCCCCHHHHHHHcCCHhHHHHH
Q psy4998         195 IASHFGQLNMVRYLVENGAN--VNATTNLGYTPLHQASQQGRVLIIDLL  241 (318)
Q Consensus       195 ~a~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~~~~L  241 (318)
                      .++.....   ++|++.|++  ++.+|..|.||||+|+..|+.++++.+
T Consensus       162 ~~~~~~~~---~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~  207 (229)
T 2vge_A          162 DYSAEFGD---ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRN  207 (229)
T ss_dssp             CBCCSSTT---BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred             HHhhcccc---ccCccccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence            66655433   577888988  678899999999999999999998764

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=3.3e-31  Score=197.98  Aligned_cols=157  Identities=32%  Similarity=0.474  Sum_probs=118.8

Q ss_pred             CCCChHHHHHHHcCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhc
Q psy4998         121 KHNITPLHVACKWGKVAMVELLISK-GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHF  199 (318)
Q Consensus       121 ~~~~~~l~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~  199 (318)
                      ..+.++|+.|+..|+.+++++|++. +.+++..+..+.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus         6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   85 (165)
T 3twr_A            6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY   85 (165)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             chhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHc
Confidence            3455677777777777777777663 445555666677777777777777777777777777777777788888888888


Q ss_pred             CCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcc
Q psy4998         200 GQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVT  278 (318)
Q Consensus       200 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~  278 (318)
                      ++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|.+ ++.+++++|...+
T Consensus        86 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~g  163 (165)
T 3twr_A           86 GHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA  163 (165)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred             CcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence            88888888888888888888788888888888888888888888888888888888888888766 7778888877654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=2.1e-30  Score=191.70  Aligned_cols=152  Identities=27%  Similarity=0.371  Sum_probs=132.2

Q ss_pred             ChHHHHHHHcCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCH
Q psy4998         124 ITPLHVACKWGKVAMVELLISK-GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQL  202 (318)
Q Consensus       124 ~~~l~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~  202 (318)
                      .++|+.|+..|+.+++++|++. +.+++..+..|.||||+ +..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   81 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH
Confidence            4778888888888888888877 34777788888888888 888888888888888888888888899999999999999


Q ss_pred             HHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhc
Q psy4998         203 NMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIV  277 (318)
Q Consensus       203 ~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  277 (318)
                      +++++|+++|++++.++..|.||||+|+..|+.+++++|+++ ++++.+|..|.||+++|+..|+.+++++|...
T Consensus        82 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            999999999999998888899999999999999999999988 88888999999999999999999999988754

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=5.9e-31  Score=196.58  Aligned_cols=159  Identities=33%  Similarity=0.497  Sum_probs=115.0

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhc-cCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHH
Q psy4998          87 SNSHFTPLHIAAHYGNTNIAELLIQK-HANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAAR  165 (318)
Q Consensus        87 ~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~  165 (318)
                      +..+.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|.+++.++..|.||||+|+.
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   84 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS   84 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence            34456677777777777777777663 33455555566677777777777777777777777777777777777777777


Q ss_pred             cCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCC
Q psy4998         166 SGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG  245 (318)
Q Consensus       166 ~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g  245 (318)
                      .++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||+++|.. ++.+++++|+++|
T Consensus        85 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~g  163 (165)
T 3twr_A           85 YGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA  163 (165)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred             cCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence            777777777777777777777777788888888888888888888888887777778888877665 7778888887776


Q ss_pred             C
Q psy4998         246 A  246 (318)
Q Consensus       246 ~  246 (318)
                      +
T Consensus       164 A  164 (165)
T 3twr_A          164 A  164 (165)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=3.6e-30  Score=194.94  Aligned_cols=165  Identities=27%  Similarity=0.367  Sum_probs=149.6

Q ss_pred             ChhHHHHHHhCCCHHHHHHHHhC-CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCc
Q psy4998          57 KLPALHIAAKKDDCKAAALLLEN-DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGK  135 (318)
Q Consensus        57 ~~~~l~~A~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~  135 (318)
                      +.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   84 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH   84 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence            45678888888888888888877 55678888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCC
Q psy4998         136 VAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANV  215 (318)
Q Consensus       136 ~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~  215 (318)
                      .+++++|++.|.+++..+..|.||||+|+..++.+++++|+++|++++..+..|.||+++|+..++.+++++|+++|+++
T Consensus        85 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~  164 (179)
T 3f6q_A           85 RDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL  164 (179)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCC
Q psy4998         216 NATTNL  221 (318)
Q Consensus       216 ~~~~~~  221 (318)
                      +..+..
T Consensus       165 ~~~~~~  170 (179)
T 3f6q_A          165 NRIPYK  170 (179)
T ss_dssp             SCBCCC
T ss_pred             ccCCcc
Confidence            877654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=6.8e-30  Score=189.00  Aligned_cols=153  Identities=27%  Similarity=0.430  Sum_probs=127.2

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhc-cCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCC
Q psy4998          90 HFTPLHIAAHYGNTNIAELLIQK-HANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGH  168 (318)
Q Consensus        90 ~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~  168 (318)
                      +.+||+.|+..|+.+++++|++. +.+++..+..|.||||+ +..|+.+++++|++.|.+++.++..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            34678888888888888888777 23667777778888888 77788888888888888888888888888888888888


Q ss_pred             HHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhC
Q psy4998         169 DNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA  244 (318)
Q Consensus       169 ~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  244 (318)
                      .+++++|+++|++++..+..|.||||+|+..++.+++++|+++ ++++.++..|.||||+|+..|+.+++++|+++
T Consensus        81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            8888888888888888888888899988888888999988888 88888888899999999999999999988874

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.97  E-value=5.9e-34  Score=238.20  Aligned_cols=256  Identities=16%  Similarity=0.152  Sum_probs=192.4

Q ss_pred             ChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHH-cCCHHHHHHHHhcCCCCCCChhHHHHHHhCCCHHHHHHHHhCCCCC-
Q psy4998           6 NHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQ-QGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSP-   83 (318)
Q Consensus         6 g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~-~g~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~-   83 (318)
                      +..+.+..+++...+.+..  .+.+++++|.. .++.++++++++.+..   +.||||.|+..|+.+++++|+++|... 
T Consensus        45 ~~~~~~~~~~~~~~~~~~~--~~ll~~~~a~~~~~~~~~~~~l~~~g~~---~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~  119 (376)
T 2aja_A           45 SYKEAIHIFLPGTKNMEQV--RQLLCLYYAHYNRNAKQLWSDAHKKGIK---SEVICFVAAITGCSSALDTLCLLLTSDE  119 (376)
T ss_dssp             CHHHHHHHCCCCSSHHHHH--HHHHHHHHHHTTTTCTTHHHHHHHHTCC---HHHHHHHHHHHCCHHHHHHHTTC--CCS
T ss_pred             cHHHHHHHHhcCCCCHHHH--HHHHHHHHHHhcCCCHHHHHHHHHcCCC---cCCHHHHHHHcCCHHHHHHHHHcCCcHH
Confidence            3445555555443332211  23457777776 5889999999988754   459999999999999999999998732 


Q ss_pred             --CCCCCCCchHHHHHHHcCCHHHHHHHHhccCCc---ccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCc--cCCCC
Q psy4998          84 --DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV---NNQAKHNITPLHVACKWGKVAMVELLISKGANIEA--KTRDG  156 (318)
Q Consensus        84 --~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~--~~~~~  156 (318)
                        ...+..+.||||+|+..|+.+++++|+++|+++   +..... .||||+|+..|+.+++++|+++|++++.  .+..|
T Consensus       120 ~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g  198 (376)
T 2aja_A          120 IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAEN  198 (376)
T ss_dssp             SCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHH
T ss_pred             HHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCC
Confidence              234456789999999999999999999999752   222222 8999999999999999999999998876  77889


Q ss_pred             ChHHHHHH-HcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCC-------CCC----C
Q psy4998         157 LTPLHCAA-RSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTN-------LGY----T  224 (318)
Q Consensus       157 ~~~l~~a~-~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~-------~g~----t  224 (318)
                      .||||+|+ ..|+.+++++|++.|.       .|.||++.|+..|+.+++++|+++|++++..+.       .|.    +
T Consensus       199 ~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~~l~~A~~~g~~~vv~  271 (376)
T 2aja_A          199 YYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVT  271 (376)
T ss_dssp             HHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSS
T ss_pred             CCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHHHHHhcCcccccccHHHHHHHHCCChhhhc
Confidence            99999999 9999999999998663       388999999999999999999999887654322       111    1


Q ss_pred             H---------HHHHHHcC---CHhHHHHHHhC---------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcc
Q psy4998         225 P---------LHQASQQG---RVLIIDLLLGA---------GAQPNATTNHGQTALNIAQKLGYISVIETLKIVT  278 (318)
Q Consensus       225 ~---------l~~A~~~~---~~~~~~~Ll~~---------g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~  278 (318)
                      +         +...+..+   ..+.+++|++.         |+++    ..+.||+++|++.|+.+++++|.+..
T Consensus       272 ~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~----n~~~~~L~~A~~~g~~e~v~lLl~~~  342 (376)
T 2aja_A          272 KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIP----GDANELLRLALRLGNQGACALLLSIP  342 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSST----TCCCHHHHHHHHHTCTTHHHHHTTSH
T ss_pred             HHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCC----CCccHHHHHHHHcCcHHHHHHHHcCh
Confidence            1         11122222   34566777763         4444    34568999999999999999998754

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=1.3e-31  Score=212.16  Aligned_cols=179  Identities=21%  Similarity=0.267  Sum_probs=131.5

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcC
Q psy4998          88 NSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSG  167 (318)
Q Consensus        88 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~  167 (318)
                      ..|.|||+.|+..++.+.++.|+++|.+++.. ..+.|||+.|+..|+.+++++|++.|.+++..+..|.||||+|+..|
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            45788999999999999999999998888754 56789999999999999999999999899989999999999999999


Q ss_pred             CHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCC-CHHHHH--HHcCCHhHHHHHHhC
Q psy4998         168 HDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGY-TPLHQA--SQQGRVLIIDLLLGA  244 (318)
Q Consensus       168 ~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~-t~l~~A--~~~~~~~~~~~Ll~~  244 (318)
                      +.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++..+..|. ||+|+|  +..|+.+++++|+++
T Consensus        82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~  161 (239)
T 1ycs_B           82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  161 (239)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999988776 999999  788999999999999


Q ss_pred             CCCCCCC---------CCCCCCHHHHHHHcCC
Q psy4998         245 GAQPNAT---------TNHGQTALNIAQKLGY  267 (318)
Q Consensus       245 g~~~~~~---------~~~g~t~l~~A~~~~~  267 (318)
                      |++++..         +..+.++.+++.+.|.
T Consensus       162 ~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          162 QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             hhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            9988765         6678888888877775

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=2.7e-30  Score=204.67  Aligned_cols=206  Identities=18%  Similarity=0.234  Sum_probs=141.4

Q ss_pred             CCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcC
Q psy4998          55 KVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWG  134 (318)
Q Consensus        55 ~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~  134 (318)
                      ..|.|||+.|+..++.+.++.|+++|.+++.. ..+.||||.|+..|+.+++++|++.+++++..+..|.||||+|+..|
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            34678888888888888888888888887754 66789999999999999999999999999888889999999999999


Q ss_pred             cHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCC-cHhHHH--hhcCCHHHHHHHHHc
Q psy4998         135 KVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGF-TPLHIA--SHFGQLNMVRYLVEN  211 (318)
Q Consensus       135 ~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~-t~l~~a--~~~~~~~~~~~Ll~~  211 (318)
                      +.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|. ||+|+|  +..|+.+++++|+++
T Consensus        82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~  161 (239)
T 1ycs_B           82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  161 (239)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999998887776 999999  778889999999999


Q ss_pred             CCCCCcC---------CCCCCCHHHHHHHcCCHhHHHHHHhCCCCC------CCCCCCCCCHHHHHH
Q psy4998         212 GANVNAT---------TNLGYTPLHQASQQGRVLIIDLLLGAGAQP------NATTNHGQTALNIAQ  263 (318)
Q Consensus       212 g~~~~~~---------~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~------~~~~~~g~t~l~~A~  263 (318)
                      |++++..         +..+.+++++++..|.  +++.|.+.+.+.      ...+..|.+|.+|..
T Consensus       162 ~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~  226 (239)
T 1ycs_B          162 QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDEDEIEWWWARLNDKEGYVPRNLLG  226 (239)
T ss_dssp             HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTTSCSSEEEEEETTEEEEEEGGGEE
T ss_pred             hhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecCCCCCCEEEEEECCcEEEeehHHee
Confidence            8887765         5557888888887776  344444444331      233455556665543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=1.8e-28  Score=176.92  Aligned_cols=133  Identities=22%  Similarity=0.304  Sum_probs=117.7

Q ss_pred             CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCC-CCC
Q psy4998         146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNL-GYT  224 (318)
Q Consensus       146 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-g~t  224 (318)
                      +.+++..+..+.||||.|+..|+.+++++|+++|++++.++..|.||||+|+. ++.+++++|+++|++++.++.. |.|
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t   80 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR   80 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence            35677788888899999999999999999999998888888889999999999 9999999999999999988888 899


Q ss_pred             HHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccc
Q psy4998         225 PLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTE  279 (318)
Q Consensus       225 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  279 (318)
                      |||+|+..|+.+++++|+++|++++.+|..|.||+++|+..++.+++++|...+.
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999998877653

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=6.1e-29  Score=183.71  Aligned_cols=143  Identities=24%  Similarity=0.296  Sum_probs=109.4

Q ss_pred             ccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCc-HhHHHh
Q psy4998         119 QAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFT-PLHIAS  197 (318)
Q Consensus       119 ~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t-~l~~a~  197 (318)
                      .+..|.|||+.|+..|+.+++++|++.|.+++..+..|.||||+|+ .|+.+++++|+++|++++.++..|.| |||+|+
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~   86 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAA   86 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHH
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence            4456778888888888888888888888888888888888888874 78888888888888888888888888 999999


Q ss_pred             hcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHH
Q psy4998         198 HFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA  262 (318)
Q Consensus       198 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A  262 (318)
                      ..++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||.+-+
T Consensus        87 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           87 REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            99999999999999999999999999999999999999999999999999999999998887754

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=1.8e-28  Score=176.83  Aligned_cols=133  Identities=26%  Similarity=0.315  Sum_probs=110.2

Q ss_pred             CCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCC-CCcH
Q psy4998         114 ANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKA-GFTP  192 (318)
Q Consensus       114 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~t~  192 (318)
                      ++++..+..|.|||+.|+..|+.+++++|++.|.+++.++..|.||||+|+. ++.+++++|+++|++++.++.. |.||
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~   81 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRP   81 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCH
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCH
Confidence            4556666777788888888888888888888777777777788888888888 8888888888888888888888 8888


Q ss_pred             hHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCC
Q psy4998         193 LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ  247 (318)
Q Consensus       193 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  247 (318)
                      ||+|+..++.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|+|
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            8888888888888888888888888888888888888888888888888888875

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=6.4e-29  Score=188.21  Aligned_cols=154  Identities=21%  Similarity=0.194  Sum_probs=114.7

Q ss_pred             ChHHHHHHHcCcHHHHHHHHHcCCCCCccC-CCCChHHHHHHHcCCH----HHHHHHHHcCCCCcCCCCCCCcHhHHHhh
Q psy4998         124 ITPLHVACKWGKVAMVELLISKGANIEAKT-RDGLTPLHCAARSGHD----NVIDILIEKGAALYSKTKAGFTPLHIASH  198 (318)
Q Consensus       124 ~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~l~~a~~~~~~----~~~~~ll~~~~~~~~~~~~~~t~l~~a~~  198 (318)
                      +++++.|+..|+.+.++.++..+.  +..+ ..|.||||+|+..++.    +++++|+++|++++.++..|+||||+|+.
T Consensus         7 ~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~   84 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQ   84 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            355667777777777666666543  2233 4567777777777653    47777777777777777777777777777


Q ss_pred             cCC------HHHHHHHHHcCCCCCcCCCCCC-CHHHHHHHcC-----CHhHHHHHHh-CCCCCCCCCCCCCCHHHHHHHc
Q psy4998         199 FGQ------LNMVRYLVENGANVNATTNLGY-TPLHQASQQG-----RVLIIDLLLG-AGAQPNATTNHGQTALNIAQKL  265 (318)
Q Consensus       199 ~~~------~~~~~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~-----~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~  265 (318)
                      .++      .+++++|+++|++++.+|..|. ||||+|+..+     ..+++++|++ +|++++.+|..|.||+++|.+.
T Consensus        85 ~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~  164 (186)
T 3t8k_A           85 GGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC  164 (186)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTT
T ss_pred             cCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHc
Confidence            665      5678888888888888888888 8888888744     3468888888 8888888888888888888888


Q ss_pred             CCHHHHHHhhhccc
Q psy4998         266 GYISVIETLKIVTE  279 (318)
Q Consensus       266 ~~~~~~~~l~~~~~  279 (318)
                      |+.+++++|..+..
T Consensus       165 ~~~~~v~~L~~~~~  178 (186)
T 3t8k_A          165 QKPIALKMMEDYIK  178 (186)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            88888888876643

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=3.5e-28  Score=184.14  Aligned_cols=160  Identities=17%  Similarity=0.198  Sum_probs=134.0

Q ss_pred             chHHHHHHHcCCHHHHHHHHhccCCccccc-CCCChHHHHHHHcCcH----HHHHHHHHcCCCCCccCCCCChHHHHHHH
Q psy4998          91 FTPLHIAAHYGNTNIAELLIQKHANVNNQA-KHNITPLHVACKWGKV----AMVELLISKGANIEAKTRDGLTPLHCAAR  165 (318)
Q Consensus        91 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~l~~a~~~~~~----~~~~~L~~~~~~~~~~~~~~~~~l~~a~~  165 (318)
                      .++|+.|+..|+.+.++.++..+.+  ..+ ..|.||||+|+..++.    +++++|++.|++++.++..|+||||+|+.
T Consensus         7 ~~~l~~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~   84 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQ   84 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            4678888888888888888776643  233 5688888888888764    48888888888888888888888888888


Q ss_pred             cCC------HHHHHHHHHcCCCCcCCCCCCC-cHhHHHhhcC-----CHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHc
Q psy4998         166 SGH------DNVIDILIEKGAALYSKTKAGF-TPLHIASHFG-----QLNMVRYLVE-NGANVNATTNLGYTPLHQASQQ  232 (318)
Q Consensus       166 ~~~------~~~~~~ll~~~~~~~~~~~~~~-t~l~~a~~~~-----~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~  232 (318)
                      .++      .+++++|+++|++++.++..|. ||||+|+..+     ..+++++|++ +|++++.+|..|.||||+|++.
T Consensus        85 ~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~  164 (186)
T 3t8k_A           85 GGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC  164 (186)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTT
T ss_pred             cCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHc
Confidence            876      5889999999999999999999 9999999844     4579999999 9999999999999999999999


Q ss_pred             CCHhHHHHHHhCCCCCCCCC
Q psy4998         233 GRVLIIDLLLGAGAQPNATT  252 (318)
Q Consensus       233 ~~~~~~~~Ll~~g~~~~~~~  252 (318)
                      |+.+++++|+++..+.+.++
T Consensus       165 ~~~~~v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          165 QKPIALKMMEDYIKKYNLKE  184 (186)
T ss_dssp             TCHHHHHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHHHHHHHHhccc
Confidence            99999999998755555443

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.95  E-value=5.8e-27  Score=168.92  Aligned_cols=124  Identities=39%  Similarity=0.579  Sum_probs=105.8

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Q psy4998         154 RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQG  233 (318)
Q Consensus       154 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  233 (318)
                      ..+.|+||.|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..|
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~   91 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG   91 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence            34667888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhc
Q psy4998         234 RVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIV  277 (318)
Q Consensus       234 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  277 (318)
                      +.+++++|+++|++++.+|..|.||+++|+..|+.+++++|..+
T Consensus        92 ~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           92 HLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             CHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            88888888888888888888888888888888888888888764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=1.7e-26  Score=164.30  Aligned_cols=123  Identities=45%  Similarity=0.703  Sum_probs=69.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCH
Q psy4998         156 GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV  235 (318)
Q Consensus       156 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  235 (318)
                      |.|||+.|+..|+.+++++|+++|.+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..++.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~   81 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChH
Confidence            44555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcc
Q psy4998         236 LIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVT  278 (318)
Q Consensus       236 ~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~  278 (318)
                      +++++|+++|++++.+|..|.||+++|+..++.+++++|.+.+
T Consensus        82 ~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  124 (126)
T 1n0r_A           82 EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG  124 (126)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            5555555555555555555555555555555555555555443

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=1.5e-27  Score=176.18  Aligned_cols=143  Identities=24%  Similarity=0.326  Sum_probs=108.7

Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCh-HHHHH
Q psy4998          85 VKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLT-PLHCA  163 (318)
Q Consensus        85 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~-~l~~a  163 (318)
                      ..+..+.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+ .|+.+++++|++.|.+++.++..|.| |||+|
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A   85 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDA   85 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence            34566788888888888888888888888888888888888888874 78888888888888888888888888 99999


Q ss_pred             HHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHH
Q psy4998         164 ARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQ  228 (318)
Q Consensus       164 ~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~  228 (318)
                      +..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++.++..|.||.+-
T Consensus        86 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~  150 (156)
T 1bi7_B           86 AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEG  150 (156)
T ss_dssp             HHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred             HHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCccccc
Confidence            99999999999999998888888889999999999999999999999999998888888888764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=3.2e-26  Score=162.80  Aligned_cols=126  Identities=47%  Similarity=0.772  Sum_probs=122.9

Q ss_pred             CCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCC
Q psy4998         122 HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQ  201 (318)
Q Consensus       122 ~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~  201 (318)
                      .|.|||+.|+..|+.+++++|++.+.+++..+..|.|||+.|+..++.+++++|++.|++++..+..|.||||+|+..++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCC
Q psy4998         202 LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ  247 (318)
Q Consensus       202 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  247 (318)
                      .+++++|+++|++++.++..|.|||++|+..++.+++++|+++|+|
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999986

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=1.4e-27  Score=172.45  Aligned_cols=133  Identities=31%  Similarity=0.422  Sum_probs=117.5

Q ss_pred             CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCH
Q psy4998         146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTP  225 (318)
Q Consensus       146 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  225 (318)
                      |+++ .++..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~   79 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP   79 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence            4455 678889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccc
Q psy4998         226 LHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTE  279 (318)
Q Consensus       226 l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  279 (318)
                      ||+|+..|+.+++++|+++|++++.+|..|.||+++|+..+..+++++|+....
T Consensus        80 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           80 LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            999999999999999999999999999999999999998888888877766543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=3e-26  Score=165.18  Aligned_cols=125  Identities=31%  Similarity=0.520  Sum_probs=109.4

Q ss_pred             CCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcC
Q psy4998         121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFG  200 (318)
Q Consensus       121 ~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~  200 (318)
                      ..+.+||+.|+..|+.+++++|++.|.+++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..+
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~   91 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG   91 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence            34668888888888888888888888888888888888888888888888888888888888888888999999999999


Q ss_pred             CHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCC
Q psy4998         201 QLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG  245 (318)
Q Consensus       201 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g  245 (318)
                      +.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|
T Consensus        92 ~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           92 HLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999999988989999999999999999999998876

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.93  E-value=4.8e-25  Score=155.96  Aligned_cols=119  Identities=27%  Similarity=0.391  Sum_probs=108.1

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Q psy4998         153 TRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQ  232 (318)
Q Consensus       153 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~  232 (318)
                      +..+.++|+.|+..|+.+++++|++.|.+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            34677999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHh
Q psy4998         233 GRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL  274 (318)
Q Consensus       233 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  274 (318)
                      ++.+++++|+++|++++.+|..|.||+++|.   +.++.++|
T Consensus        84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~---~~~~~~ll  122 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATD---NQAIKALL  122 (123)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC---CHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC---CHHHHHHh
Confidence            9999999999999999999999999999994   55555554

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=5.7e-26  Score=163.99  Aligned_cols=128  Identities=27%  Similarity=0.415  Sum_probs=83.6

Q ss_pred             cccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHh
Q psy4998         118 NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIAS  197 (318)
Q Consensus       118 ~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~  197 (318)
                      .++..|.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence            34455666666666666666666666666666666666666666666666666666666666666666666777777777


Q ss_pred             hcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCC
Q psy4998         198 HFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG  245 (318)
Q Consensus       198 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g  245 (318)
                      ..++.+++++|+++|++++.++..|.||+++|+..+..+++++|.+.+
T Consensus        85 ~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           85 KNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            777777777777777777777777777777777666666666665543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=1.7e-24  Score=176.58  Aligned_cols=140  Identities=21%  Similarity=0.193  Sum_probs=118.7

Q ss_pred             CChHHHHHHHcCcHHHHHHHHHcCCCCCc------cCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCcCCCCCCCcHh
Q psy4998         123 NITPLHVACKWGKVAMVELLISKGANIEA------KTRDGLTPLHCAARS---GHDNVIDILIEKGAALYSKTKAGFTPL  193 (318)
Q Consensus       123 ~~~~l~~a~~~~~~~~~~~L~~~~~~~~~------~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~t~l  193 (318)
                      ..++|+.|+..|+.+.++.|++.|.+++.      .+..|.||||+|+..   ++.+++++|+++|++++.++..|.|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            45679999999999999999999988887      578889999999987   889999999999999999999999999


Q ss_pred             HHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Q psy4998         194 HIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYI  268 (318)
Q Consensus       194 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  268 (318)
                      |+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++      .|.||+|+|+.+|+.
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            999999999999999999999999999999999999999999999999999876      468999999988763

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=6.5e-25  Score=166.44  Aligned_cols=139  Identities=25%  Similarity=0.380  Sum_probs=110.6

Q ss_pred             CCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCC-CCCCcHhHHHhhc
Q psy4998         121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT-KAGFTPLHIASHF  199 (318)
Q Consensus       121 ~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~t~l~~a~~~  199 (318)
                      ..|.|||+.|+..|+.+++++|++ +.+++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~  120 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  120 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc
Confidence            356678888888888888888887 77777778888888888888888888888888888887777 7788888888888


Q ss_pred             CCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhc
Q psy4998         200 GQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIV  277 (318)
Q Consensus       200 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  277 (318)
                      ++.+++++|+++|++++.++..|.||||+|++.++.                 ..+.+++++|++.|..+++++|+..
T Consensus       121 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          121 VRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             CcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence            888888888888888888888888888888764332                 2456788888888888888888653

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=6.4e-25  Score=174.12  Aligned_cols=141  Identities=25%  Similarity=0.366  Sum_probs=123.7

Q ss_pred             CCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCC-CCCCcHhHHHhhc
Q psy4998         121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT-KAGFTPLHIASHF  199 (318)
Q Consensus       121 ~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~t~l~~a~~~  199 (318)
                      ..|.||||.|+..|+.+++++|++ +.+++.++..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence            357789999999999999999988 88888888899999999999999999999999999998887 7799999999999


Q ss_pred             CCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccc
Q psy4998         200 GQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTE  279 (318)
Q Consensus       200 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  279 (318)
                      |+.+++++|+++|++++.++..|.||||+|+..+..                 ..+.||+++|+..|+.+++++|.....
T Consensus       122 g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~-----------------~~~~~~l~~a~~~g~~~iv~~L~~~~~  184 (244)
T 3ui2_A          122 VRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINVLEGQVF  184 (244)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTT-----------------CCCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhc-----------------cCCCCHHHHHHHcChHHHHHHHHHhcc
Confidence            999999999999999999999999999999863221                 457899999999999999999987644

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.91  E-value=5.9e-25  Score=172.07  Aligned_cols=133  Identities=25%  Similarity=0.328  Sum_probs=88.8

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHH
Q psy4998         153 TRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN-GANVNATTNLGYTPLHQASQ  231 (318)
Q Consensus       153 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~  231 (318)
                      +..|.|+||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|+++ |++++..+..|.||||+|+.
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence            34566777777777777777777777777777777777777777777777777777776 77777777777777777777


Q ss_pred             cCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccceecc
Q psy4998         232 QGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETTIVTT  285 (318)
Q Consensus       232 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~~~  285 (318)
                      .|+.+++++|+++|++++.+|..|.||+++|+..++.++++.|..........+
T Consensus       150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~  203 (222)
T 3ehr_A          150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSN  203 (222)
T ss_dssp             HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------------
T ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccc
Confidence            777777777777777777777777777777777777777766666655544333

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.91  E-value=1.5e-23  Score=169.10  Aligned_cols=125  Identities=26%  Similarity=0.281  Sum_probs=109.4

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCC------cCCCCCCCcHhHHHhhc---CCHHHHHHHHHcCCCCCcCCCCCCCHHH
Q psy4998         157 LTPLHCAARSGHDNVIDILIEKGAAL------YSKTKAGFTPLHIASHF---GQLNMVRYLVENGANVNATTNLGYTPLH  227 (318)
Q Consensus       157 ~~~l~~a~~~~~~~~~~~ll~~~~~~------~~~~~~~~t~l~~a~~~---~~~~~~~~Ll~~g~~~~~~~~~g~t~l~  227 (318)
                      .++|+.|+..++.+.+..+++.|.++      +..+..|.||||+|+..   ++.+++++|+++|++++.+|..|.||||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh  210 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHH
Confidence            35788888888888888888888874      34467889999999998   8899999999999999999999999999


Q ss_pred             HHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccc
Q psy4998         228 QASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETT  281 (318)
Q Consensus       228 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  281 (318)
                      +|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.+++++|...+...
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999999999999999999999999999999999999999999998887754

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=5.4e-24  Score=161.38  Aligned_cols=138  Identities=26%  Similarity=0.360  Sum_probs=86.9

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccC-CCCChHHHHHHHcC
Q psy4998          89 SHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKT-RDGLTPLHCAARSG  167 (318)
Q Consensus        89 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~l~~a~~~~  167 (318)
                      .|.||||.|+..|+.+++++|++ +.+++..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~  121 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV  121 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcC
Confidence            34556666666666666666665 55555555566666666666666666666666666665555 55666666666666


Q ss_pred             CHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhC
Q psy4998         168 HDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA  244 (318)
Q Consensus       168 ~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  244 (318)
                      +.+++++|+++|++++.++..|.||||+|+..++.                 ..+.++|++|+..|..+++++|.++
T Consensus       122 ~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          122 RPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence            66666666666666666666666666666653211                 2356677777777777777777654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.91  E-value=9.3e-25  Score=170.94  Aligned_cols=136  Identities=21%  Similarity=0.320  Sum_probs=109.5

Q ss_pred             cCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCcCCCCCCCcHhHHHhh
Q psy4998         120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK-GAALYSKTKAGFTPLHIASH  198 (318)
Q Consensus       120 ~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~t~l~~a~~  198 (318)
                      +..|.||||.|+..|+.+++++|++.|.+++.++..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+.
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence            34577899999999999999999999988888888999999999999999999999988 89999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCC
Q psy4998         199 FGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHG  255 (318)
Q Consensus       199 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g  255 (318)
                      .|+.+++++|+++|++++.++..|.|||++|+..+..++++.|++.|+.....+..+
T Consensus       150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence            999999999999999999999999999999999999999999999998887665543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=8.5e-24  Score=167.66  Aligned_cols=141  Identities=26%  Similarity=0.352  Sum_probs=103.3

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccC-CCCChHHHHHHHcC
Q psy4998          89 SHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKT-RDGLTPLHCAARSG  167 (318)
Q Consensus        89 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~l~~a~~~~  167 (318)
                      .|.||||+|+..|+.+++++|++ +.+++.++..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g  122 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV  122 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcC
Confidence            45677777777777777777777 66777777777777777777777777777777777776666 66777777777777


Q ss_pred             CHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCC
Q psy4998         168 HDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ  247 (318)
Q Consensus       168 ~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  247 (318)
                      +.+++++|+++|++++.++..|.||||+|+..++                 ...+.|||++|+..|+.+++++|++++.+
T Consensus       123 ~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          123 RPEVVEALVELGADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence            7777777777777777777777788877765211                 13577888888888888888888886443

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.90  E-value=8.4e-23  Score=164.71  Aligned_cols=192  Identities=18%  Similarity=0.154  Sum_probs=145.0

Q ss_pred             CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCC-CchHHHHHHHcCCHHHHHHHHhccCC-cccccCCCChHHHHHH
Q psy4998          54 GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNS-HFTPLHIAAHYGNTNIAELLIQKHAN-VNNQAKHNITPLHVAC  131 (318)
Q Consensus        54 ~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~l~~a~  131 (318)
                      +..+.+.++.+...|+....+++...-......... +....+    ....-..+++...... .........++|+.|+
T Consensus        63 d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~----~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~  138 (278)
T 1dcq_A           63 DVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIA----RKDYITAKYMERRYARKKHADTAAKLHSLCEAV  138 (278)
T ss_dssp             SCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHH----HHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHH----HHHHHHHHHHHhhcccccccccchhhhhhhhHh
Confidence            556677888888888887776664432222111111 111111    1111112233222221 1111223356899999


Q ss_pred             HcCcHHHHHHHHHcCCCCC------ccCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCH
Q psy4998         132 KWGKVAMVELLISKGANIE------AKTRDGLTPLHCAARS---GHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQL  202 (318)
Q Consensus       132 ~~~~~~~~~~L~~~~~~~~------~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~  202 (318)
                      ..|+.+.+..++..|.+++      ..+..|.||||+|+..   ++.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus       139 ~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~  218 (278)
T 1dcq_A          139 KTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNA  218 (278)
T ss_dssp             HTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             hhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCH
Confidence            9999999999999998844      4478899999999999   899999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCC
Q psy4998         203 NMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPN  249 (318)
Q Consensus       203 ~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~  249 (318)
                      +++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++..
T Consensus       219 ~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          219 ECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF  265 (278)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999999999988653

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.90  E-value=3.1e-23  Score=169.13  Aligned_cols=144  Identities=22%  Similarity=0.209  Sum_probs=125.2

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhccCCccc------ccCCCChHHHHHHHc---CcHHHHHHHHHcCCCCCccCCCC
Q psy4998          86 KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN------QAKHNITPLHVACKW---GKVAMVELLISKGANIEAKTRDG  156 (318)
Q Consensus        86 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~------~~~~~~~~l~~a~~~---~~~~~~~~L~~~~~~~~~~~~~~  156 (318)
                      ......++|+.|+..++.+.++.|++.+.+++.      .+..|.||||+|+..   ++.+++++|++.|++++.++..|
T Consensus       147 ~~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G  226 (301)
T 2b0o_E          147 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADG  226 (301)
T ss_dssp             CCC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTC
T ss_pred             ccCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCC
Confidence            344567899999999999999999999999887      577899999999987   89999999999999999999999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCH
Q psy4998         157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRV  235 (318)
Q Consensus       157 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  235 (318)
                      .||||+|+..|+.+++++|+++|++++.++..|.|||++|+..++.+++++|+++|++      .|.||||+|+..|+.
T Consensus       227 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          227 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            9999999999999999999999999999999999999999999999999999999876      478999999988763

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=2.6e-23  Score=146.98  Aligned_cols=108  Identities=33%  Similarity=0.416  Sum_probs=55.3

Q ss_pred             CChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCc
Q psy4998          56 VKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGK  135 (318)
Q Consensus        56 ~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~  135 (318)
                      .+.++|+.|+..|+.+++++|++.|.+++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..++
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~   85 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH   85 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC
Confidence            34455555555555555555555555555555555555555555555555555555555555444445555555555555


Q ss_pred             HHHHHHHHHcCCCCCccCCCCChHHHHH
Q psy4998         136 VAMVELLISKGANIEAKTRDGLTPLHCA  163 (318)
Q Consensus       136 ~~~~~~L~~~~~~~~~~~~~~~~~l~~a  163 (318)
                      .+++++|++.|++++.++..|.||+++|
T Consensus        86 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           86 VSCVKLLLSKGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence            5555555555444444444444444444

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=1.8e-22  Score=135.18  Aligned_cols=90  Identities=42%  Similarity=0.668  Sum_probs=58.2

Q ss_pred             CCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Q psy4998         189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYI  268 (318)
Q Consensus       189 ~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  268 (318)
                      |.||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~   81 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            55666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHhhhcc
Q psy4998         269 SVIETLKIVT  278 (318)
Q Consensus       269 ~~~~~l~~~~  278 (318)
                      +++++|...+
T Consensus        82 ~~~~~Ll~~g   91 (93)
T 1n0q_A           82 EVVKLLLEAG   91 (93)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHcC
Confidence            6666665543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=2e-22  Score=134.91  Aligned_cols=93  Identities=49%  Similarity=0.787  Sum_probs=86.0

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC
Q psy4998         155 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR  234 (318)
Q Consensus       155 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  234 (318)
                      +|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHhCCCC
Q psy4998         235 VLIIDLLLGAGAQ  247 (318)
Q Consensus       235 ~~~~~~Ll~~g~~  247 (318)
                      .+++++|+++|++
T Consensus        81 ~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999875

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.89  E-value=2.3e-22  Score=167.50  Aligned_cols=126  Identities=25%  Similarity=0.310  Sum_probs=117.4

Q ss_pred             CCChHHHHHHHc-CCHHHHHHHHHcCCCCcCCC--CCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Q psy4998         155 DGLTPLHCAARS-GHDNVIDILIEKGAALYSKT--KAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQ  231 (318)
Q Consensus       155 ~~~~~l~~a~~~-~~~~~~~~ll~~~~~~~~~~--~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~  231 (318)
                      .+.++||.|+.. ++.+++++|+++|++++..+  ..|.||||+|+..++.+++++|+++|++++..|..|.||||+|+.
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~  277 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI  277 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            456799999999 99999999999999999887  789999999999999999999999999999999999999999999


Q ss_pred             cCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcccc
Q psy4998         232 QGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTET  280 (318)
Q Consensus       232 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  280 (318)
                      .|+.+++++|+++|++++..|..|.|||++|+..++.+++++|+.....
T Consensus       278 ~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             cCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999977643

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.88  E-value=2.4e-22  Score=167.43  Aligned_cols=144  Identities=24%  Similarity=0.305  Sum_probs=119.5

Q ss_pred             CCChHHHHHHHc-CcHHHHHHHHHcCCCCCccC--CCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhh
Q psy4998         122 HNITPLHVACKW-GKVAMVELLISKGANIEAKT--RDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASH  198 (318)
Q Consensus       122 ~~~~~l~~a~~~-~~~~~~~~L~~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~  198 (318)
                      .+.++|+.|+.. ++.+++++|++.|++++..+  ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~  277 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI  277 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            345799999999 99999999999999999888  889999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCC---CCCCCCCCCCCHHHHHHHc
Q psy4998         199 FGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA---QPNATTNHGQTALNIAQKL  265 (318)
Q Consensus       199 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~---~~~~~~~~g~t~l~~A~~~  265 (318)
                      .++.+++++|+++|++++..|..|.||||+|+..++.+++++|+..+.   +....+..+.|+++++..+
T Consensus       278 ~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             cCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999998763   3344556677777776654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.87  E-value=1e-22  Score=142.16  Aligned_cols=109  Identities=39%  Similarity=0.575  Sum_probs=94.2

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Q psy4998         151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQAS  230 (318)
Q Consensus       151 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~  230 (318)
                      .++..|.|+||+|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            35678888999999999999999999888888888888999999999999999999999999999988888999999999


Q ss_pred             HcCCHhHHHHHHhCCCCCCCCCCCCCCHH
Q psy4998         231 QQGRVLIIDLLLGAGAQPNATTNHGQTAL  259 (318)
Q Consensus       231 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l  259 (318)
                      ..++.+++++|+++|++++.++..|.+|-
T Consensus        84 ~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           84 KNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            99999999999999999988888888764

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.84  E-value=4.8e-21  Score=133.63  Aligned_cols=108  Identities=40%  Similarity=0.611  Sum_probs=84.5

Q ss_pred             ccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhh
Q psy4998         119 QAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASH  198 (318)
Q Consensus       119 ~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~  198 (318)
                      ++..|.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+.
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~   84 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK   84 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            45667777777777777777777777777777777778888888888888888888888888888888888888888888


Q ss_pred             cCCHHHHHHHHHcCCCCCcCCCCCCCHH
Q psy4998         199 FGQLNMVRYLVENGANVNATTNLGYTPL  226 (318)
Q Consensus       199 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l  226 (318)
                      .++.+++++|+++|++++.++..|.+|-
T Consensus        85 ~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           85 NGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             CCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            8888888888888888888887777763

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.84  E-value=2e-20  Score=129.24  Aligned_cols=93  Identities=35%  Similarity=0.431  Sum_probs=84.8

Q ss_pred             cCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHH
Q psy4998         183 YSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA  262 (318)
Q Consensus       183 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A  262 (318)
                      ...+..|.||||.|+..++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS   97 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHhh
Q psy4998         263 QKLGYISVIETLK  275 (318)
Q Consensus       263 ~~~~~~~~~~~l~  275 (318)
                      +..|+.+++++|+
T Consensus        98 ~~~~~~~~~~~L~  110 (110)
T 2zgd_A           98 IDNGNEDLAEILQ  110 (110)
T ss_dssp             HHHTCHHHHHHHC
T ss_pred             HHcCCHHHHHHhC
Confidence            9999999999874

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.78  E-value=1.4e-18  Score=119.84  Aligned_cols=91  Identities=35%  Similarity=0.521  Sum_probs=82.4

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Q psy4998         151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQAS  230 (318)
Q Consensus       151 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~  230 (318)
                      ..+..+.++||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~   98 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI   98 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHH
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHhHHHHH
Q psy4998         231 QQGRVLIIDLL  241 (318)
Q Consensus       231 ~~~~~~~~~~L  241 (318)
                      ..|+.+++++|
T Consensus        99 ~~~~~~~~~~L  109 (110)
T 2zgd_A           99 DNGNEDLAEIL  109 (110)
T ss_dssp             HHTCHHHHHHH
T ss_pred             HcCCHHHHHHh
Confidence            99999999886

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=86.63  E-value=4.5  Score=29.34  Aligned_cols=131  Identities=11%  Similarity=0.057  Sum_probs=82.0

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhcCCCCCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHH
Q psy4998          29 FTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAEL  108 (318)
Q Consensus        29 ~t~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~  108 (318)
                      .+-+..|+..|++++.--+.+...........=..|...|++++++....+-.++.       ..+......|+.+-++.
T Consensus         9 ~~rF~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~-------~L~~Ly~~tg~~e~L~k   81 (177)
T 3mkq_B            9 HIRFDLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFD-------KLSFLYLVTGDVNKLSK   81 (177)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH-------HHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHH-------HHHHHHHHhCCHHHHHH
Confidence            35688899999998887776643222223345567888899999998887643322       24445555677777776


Q ss_pred             HHhccCCcccccCCCChHHHHHHHcCcHH-HHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHc
Q psy4998         109 LIQKHANVNNQAKHNITPLHVACKWGKVA-MVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK  178 (318)
Q Consensus       109 ll~~~~~~~~~~~~~~~~l~~a~~~~~~~-~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  178 (318)
                      +.+....    .......++.+...|..+ +++.|.+.|-        ..-+...|..+|..+..+-+++.
T Consensus        82 la~iA~~----~g~~n~af~~~l~lGdv~~~i~lL~~~~r--------~~eA~~~A~t~g~~~~a~~~~~~  140 (177)
T 3mkq_B           82 MQNIAQT----REDFGSMLLNTFYNNSTKERSSIFAEGGS--------LPLAYAVAKANGDEAAASAFLEQ  140 (177)
T ss_dssp             HHHHHHH----TTCHHHHHHHHHHHTCHHHHHHHHHHTTC--------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHH----CccHHHHHHHHHHcCCHHHHHHHHHHCCC--------hHHHHHHHHHcCcHHHHHHHHHH
Confidence            6543211    112235567777777654 6676665532        11356677778888888877753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	318
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-56
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-49
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-45
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-44
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-34
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-38
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-33
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-23
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-35
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-34
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-29
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-28
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-29
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-25
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-20
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-27
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-27
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-27
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-16
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-27
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-20
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-19
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.004
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-26
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-23
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-18
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-14
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-24
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-20
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-21
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-21
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-21
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.001
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-19
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-18
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-17
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-12
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-17
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-17
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-15
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.001
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	6e-17
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-15
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-13
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-16
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	7e-16
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	4e-13
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-11
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	4e-13
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	4e-12
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	5e-12
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	7e-12
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-10
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.001
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-10
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-10
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.004
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-10
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	4e-09
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-08
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	5e-05
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	6e-09
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	3e-07
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	7e-07
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	3e-05

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  185 bits (470), Expect = 3e-56
 Identities = 130/308 (42%), Positives = 186/308 (60%), Gaps = 8/308 (2%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
           +AA+E H   V  LL K  +Q   T+ GFTPL VA + G  RV  +LLE     +  GK 
Sbjct: 105 IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN 164

Query: 57  KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
            L  LH+A   ++     LLL    SP   + + +TPLHIAA      +A  L+Q   + 
Sbjct: 165 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 224

Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
           N ++   +TPLH+A + G   MV LL+SK AN     + GLTPLH  A+ GH  V D+LI
Sbjct: 225 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 284

Query: 177 EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
           + G  + + T+ G+TPLH+ASH+G + +V++L+++ A+VNA T LGY+PLHQA+QQG   
Sbjct: 285 KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD 344

Query: 237 IIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETTIVTTTVTTIEEKYRV 296
           I+ LLL  GA PN  ++ G T L IA++LGYISV + LK+VT+     T+   + +K+R+
Sbjct: 345 IVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTD----ETSFVLVSDKHRM 400

Query: 297 VAPEAMQE 304
             PE + E
Sbjct: 401 SFPETVDE 408

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  167 bits (422), Expect = 4e-49
 Identities = 97/278 (34%), Positives = 154/278 (55%), Gaps = 4/278 (1%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN----DTKGKV 56
           +A+   H  +V+ LL +G +  ++     TPL +A + GH  V   LL+N    + K K 
Sbjct: 6   VASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD 65

Query: 57  KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
               LH AA+        LLLEN+ +P++ + +  TPLHIAA  G+      L++K A+ 
Sbjct: 66  DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQ 125

Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILI 176
               K   TPLHVA K+GKV + ELL+ + A+  A  ++GLTPLH A    + +++ +L+
Sbjct: 126 ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLL 185

Query: 177 EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL 236
            +G + +S    G+TPLHIA+   Q+ + R L++ G + NA +  G TPLH A+Q+G   
Sbjct: 186 PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE 245

Query: 237 IIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           ++ LLL   A  N     G T L++  + G++ V + L
Sbjct: 246 MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 283

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  155 bits (393), Expect = 5e-45
 Identities = 88/247 (35%), Positives = 133/247 (53%), Gaps = 4/247 (1%)

Query: 30  TPLAVAMQQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDV 85
           TPL VA   GH  +V  LL+     +         LH+AA+    + A  LL+N    + 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 86  KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK 145
           K+    TPLH AA  G+TN+ +LL++ +AN N       TPLH+A + G V  V  L+ K
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMV 205
            A+    T+ G TPLH AA+ G   V ++L+E+ A   +  K G TPLH+A H   L++V
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 181

Query: 206 RYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKL 265
           + L+  G + ++    GYTPLH A++Q +V +   LL  G   NA +  G T L++A + 
Sbjct: 182 KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE 241

Query: 266 GYISVIE 272
           G+  ++ 
Sbjct: 242 GHAEMVA 248

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  154 bits (389), Expect = 2e-44
 Identities = 86/215 (40%), Positives = 120/215 (55%)

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
            LH+A+          LL+   SP+V +    TPLH+AA  G+T +A+ L+Q  A VN +
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 62

Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 179
           AK + TPLH A + G   MV+LL+   AN    T  G TPLH AAR GH   +  L+EK 
Sbjct: 63  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 122

Query: 180 AALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIID 239
           A+    TK GFTPLH+A+ +G++ +   L+E  A+ NA    G TPLH A     + I+ 
Sbjct: 123 ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK 182

Query: 240 LLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           LLL  G  P++   +G T L+IA K   + V  +L
Sbjct: 183 LLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 217

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (318), Expect = 4e-34
 Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 33/184 (17%)

Query: 124 ITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 183
           +TPLHVA   G + +V+ L+ +GA+         TPLH AAR+GH  V   L++  A + 
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 184 SKTKAGFTPLHIASHFGQLNMVRYLVEN-------------------------------- 211
           +K K   TPLH A+  G  NMV+ L+EN                                
Sbjct: 61  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 120

Query: 212 -GANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISV 270
             A+    T  G+TPLH A++ G+V + +LLL   A PNA   +G T L++A     + +
Sbjct: 121 KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDI 180

Query: 271 IETL 274
           ++ L
Sbjct: 181 VKLL 184

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (339), Expect = 3e-38
 Identities = 71/271 (26%), Positives = 113/271 (41%), Gaps = 21/271 (7%)

Query: 2   AAQENHDGVVRYLLSKGGNQTLAT-EDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKL-- 58
           A Q     +V+ LL  G N      E G+TPL  A+Q   + +V +LL +     ++   
Sbjct: 12  AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 71

Query: 59  --PALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
                 +AA     K   L L      +      FT    AA YG     + L ++ ANV
Sbjct: 72  GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131

Query: 117 NNQAKHNI----------TPLHVACKWGKVAMVELLISK-GANIEAKTRDGLTPLHCAAR 165
           N + K             T L  A + G V ++++L+ + GA++ A    G   L  A  
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL 191

Query: 166 SGHDN----VIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE-NGANVNATTN 220
           S  D+    +  +L++ GA +  + + G TPL +A     L +V+ L+E     +N T +
Sbjct: 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS 251

Query: 221 LGYTPLHQASQQGRVLIIDLLLGAGAQPNAT 251
            G T L  A +     I +LL   GA  +  
Sbjct: 252 DGKTALLLAVELKLKKIAELLCKRGASTDCG 282

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (303), Expect = 4e-33
 Identities = 75/272 (27%), Positives = 117/272 (43%), Gaps = 21/272 (7%)

Query: 24  ATEDGFTPLAVAMQQGHDRVVAVLLE-----NDTKGKVKLPALHIAAKKDDCKAAALLLE 78
           A  +    L  A+Q     +V  LLE     N  + +     LH A +        LLL 
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 79  NDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAM 138
           +   P ++  +  TP  +AA  G+  + +L + K A+VN    +  T    A  +GKV  
Sbjct: 61  HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120

Query: 139 VELLISKGAN----------IEAKTRDGLTPLHCAARSGHDNVIDILI-EKGAALYSKTK 187
           ++ L  +GAN           E   + G T L  AA  GH  V+ IL+ E GA + +   
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180

Query: 188 AGFTPLHIASHFGQLNMV----RYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
            G   L  A      + V      L+++GA+VN     G TPL  A ++  + ++  LL 
Sbjct: 181 MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240

Query: 244 -AGAQPNATTNHGQTALNIAQKLGYISVIETL 274
               + N T + G+TAL +A +L    + E L
Sbjct: 241 QEHIEINDTDSDGKTALLLAVELKLKKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.9 bits (232), Expect = 7e-23
 Identities = 43/200 (21%), Positives = 76/200 (38%), Gaps = 20/200 (10%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLP- 59
           +AA      +++  LSKG +       GFT    A   G  + +  L +      ++   
Sbjct: 78  LAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT 137

Query: 60  -------------ALHIAAKKDDCKAAALLLENDH-SPDVKSNSHFTPLHIAAHYGNTN- 104
                        AL  AA+K   +   +LL+      +   N     L  A    + + 
Sbjct: 138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD 197

Query: 105 ---IAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK-GANIEAKTRDGLTPL 160
              I  LL+   A+VN + +   TPL +A +   + +V+ L+ +    I     DG T L
Sbjct: 198 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 257

Query: 161 HCAARSGHDNVIDILIEKGA 180
             A       + ++L ++GA
Sbjct: 258 LLAVELKLKKIAELLCKRGA 277

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 2e-35
 Identities = 63/217 (29%), Positives = 99/217 (45%), Gaps = 1/217 (0%)

Query: 58  LPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN 117
           L   ++A      +    +L +            T LH A   G+T I E L+Q    VN
Sbjct: 5   LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 64

Query: 118 NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
           ++     +PLH+A   G+  +V+ L+ KGA + A  ++G TPLH AA      +  +L+E
Sbjct: 65  DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 124

Query: 178 KGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLI 237
            GA   +K     T +H A+  G L M+  L+   A+ N     G TPLH A  + RV  
Sbjct: 125 GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEE 184

Query: 238 IDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
             LL+  GA         +T L +A+  G   +++ +
Sbjct: 185 AKLLVSQGASIYIENKEEKTPLQVAKG-GLGLILKRM 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (307), Expect = 3e-34
 Identities = 61/242 (25%), Positives = 99/242 (40%), Gaps = 30/242 (12%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           +A     + +   +L+     T   +D  T L                            
Sbjct: 10  LAYSGKLEELKESILADKSLATRTDQDSRTAL---------------------------- 41

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA 120
            H A      +    LL+     + K ++ ++PLHIAA  G   I + L+ K A VN   
Sbjct: 42  -HWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVN 100

Query: 121 KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGA 180
           ++  TPLH A    +  +  +L+  GAN +AK     T +H AA  G+  +I IL+   A
Sbjct: 101 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA 160

Query: 181 ALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDL 240
           +   +   G TPLH+A    ++   + LV  GA++        TPL  A + G  LI+  
Sbjct: 161 STNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKR 219

Query: 241 LL 242
           ++
Sbjct: 220 MV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 8e-05
 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 4   QENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLE 49
            E      + L+S+G +  +  ++  TPL VA + G   ++  ++E
Sbjct: 178 DEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE 222

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  112 bits (280), Expect = 1e-29
 Identities = 58/248 (23%), Positives = 85/248 (34%), Gaps = 6/248 (2%)

Query: 2   AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
           A        V  LL +G +   A  DG T L  A    +  +V  L+EN           
Sbjct: 47  ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106

Query: 62  HIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAK 121
            I            + E   S      +  +              E L+Q    VN Q  
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE--VNRQGV 164

Query: 122 HNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA 181
                     +       + L S   N     + G T LH AA  G+  V+ +LI+    
Sbjct: 165 DIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD 224

Query: 182 LYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL 241
           +  K   G+TPLH A+H+G+    R LVEN  ++ A   +G T    A +     I+  L
Sbjct: 225 VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED----ILGYL 280

Query: 242 LGAGAQPN 249
                + N
Sbjct: 281 EELQKKQN 288

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  109 bits (273), Expect = 1e-28
 Identities = 59/242 (24%), Positives = 95/242 (39%), Gaps = 29/242 (11%)

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
               A    D +    LLE     +  +    T LH A    N ++ + L++  AN+N  
Sbjct: 43  VFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP 102

Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDN--------- 170
                 PLH A   G + + E LIS+GA++ A   +G TPL  A     +          
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ 162

Query: 171 ------------------VIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENG 212
                                 L           K+G T LH+A+  G   +++ L++  
Sbjct: 163 GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR 222

Query: 213 ANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQK--LGYISV 270
            +VN     G+TPLH A+  G+     +L+       A    GQTA ++A +  LGY+  
Sbjct: 223 YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEE 282

Query: 271 IE 272
           ++
Sbjct: 283 LQ 284

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.9 bits (89), Expect = 4e-04
 Identities = 8/51 (15%), Positives = 17/51 (33%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEND 51
            AA    +   R L+    +     + G T   VA +     +  +  + +
Sbjct: 238 AAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQN 288

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (275), Expect = 3e-29
 Identities = 59/245 (24%), Positives = 89/245 (36%), Gaps = 22/245 (8%)

Query: 25  TEDGFTPLAVAMQQGHDRVVAVLLEN-------DTKGKVKLPALHIAAKKDDCKAAALLL 77
           TEDG T L +A+   H+  +  LL         D +  +   ALH+AA   +      L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 78  ENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKW---- 133
                  V      T LH+A        A +L+Q   +    A          C      
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125

Query: 134 ----------GKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 183
                      +             +EA+  DG TPLH A       ++ +L + GA L 
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN 185

Query: 184 S-KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLL 242
             +   G TPLH+A      +++  L++ GA+  A    G TPL  A  +   ++  LL 
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLR 245

Query: 243 GAGAQ 247
             GA 
Sbjct: 246 AHGAP 250

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 99.8 bits (247), Expect = 3e-25
 Identities = 57/233 (24%), Positives = 86/233 (36%), Gaps = 18/233 (7%)

Query: 60  ALHIAAKKDDCKAAALLLENDHSP---DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
           ALH+A           LL         D++++   T LH+AA  G  +  E L    A V
Sbjct: 12  ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV 71

Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTP--------------LHC 162
               +   T LH+AC+        +L+    +      D                     
Sbjct: 72  LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVD 131

Query: 163 AARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNA-TTNL 221
           +  +  +       +    L ++   G TPLH+A       MVR L + GA++N      
Sbjct: 132 SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTC 191

Query: 222 GYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           G TPLH A +     +++LLL AGA P A    G+T L  A       +   L
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.1 bits (214), Expect = 1e-20
 Identities = 40/237 (16%), Positives = 67/237 (28%), Gaps = 55/237 (23%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTL---ATEDGFTPLAVAMQQGHDRVVAVLLENDTKG--- 54
           +A    H+  + +LL             + G T L +A   G    V  L          
Sbjct: 15  LAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVA 74

Query: 55  -KVKLPALHIAAKKDDCKAAALLLENDHSPDVKSN--------------SHFTPLHIAAH 99
            +    ALH+A +      A +LL+   S    ++              SH      +  
Sbjct: 75  ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP 134

Query: 100 YGNTNIAELLIQKHANVN----------------------------------NQAKHNIT 125
                           +                                    +     T
Sbjct: 135 NPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT 194

Query: 126 PLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAAL 182
           PLH+A +    +++ELL+  GA+  A+   G TPL  A    +  +  +L   GA  
Sbjct: 195 PLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPE 251

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.2 bits (165), Expect = 6e-14
 Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 3/107 (2%)

Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGA---ALYSKTKAGFTPLHIASHFGQLNMVRYL 208
            T DG T LH A    H+  +D L+   A    L  +   G T LH+A+  G+ + V  L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 209 VENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHG 255
              GA V      G+T LH A +        +LL          +  
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDT 111

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.2 bits (152), Expect = 3e-12
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 3/93 (3%)

Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGAN---VNATTNLGYTPLHQASQQGRVLIIDLL 241
            T+ G T LH+A        + +L+   A    ++   +LG T LH A+  G    ++ L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 242 LGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
             AGA        G TAL++A ++   +    L
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVL 97

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  108 bits (269), Expect = 1e-27
 Identities = 31/259 (11%), Positives = 76/259 (29%), Gaps = 34/259 (13%)

Query: 1   MAAQENHDGVVRY---LLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVK 57
           +AA       +     LL+      +   + +    +A + GH  V+  L E      + 
Sbjct: 96  VAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMA 155

Query: 58  LP------ALHIAAKKDDCKAAALLLE---NDHSPDVKSNSHFTPLHIAAHYGNTNIAEL 108
           +       A  +AA+         L E    + +  +++ +++     A   G+ N+   
Sbjct: 156 MIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINF 215

Query: 109 LIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGH 168
           L+     +               ++G+  +   +      ++    +       +   G 
Sbjct: 216 LLDCPVMLA-------YAEIHEFEYGEKYVNPFIARHVNRLK----EMHDAFKLSNPDGV 264

Query: 169 DNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA-----NVNATTNLGY 223
            +++        +   +       L   +    L+ +R+L+                   
Sbjct: 265 FDLVT------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDAN 318

Query: 224 TPLHQASQQGRVLIIDLLL 242
             L  A + G      LLL
Sbjct: 319 ELLRLALRLGNQGACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  106 bits (266), Expect = 3e-27
 Identities = 36/310 (11%), Positives = 77/310 (24%), Gaps = 61/310 (19%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
           +   +N + V + L     +     +  ++       +                      
Sbjct: 52  LPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEV------------------I 93

Query: 61  LHIAAKK---DDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN 117
             +AA            LLL +D    V    ++    +AA  G+ ++   L +      
Sbjct: 94  CFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI 153

Query: 118 --NQAKHNITPLHVACKWGKVAMVELLISKGANIE---AKTRDGLTPLHCAARSGHDNVI 172
                  N     +A + G + ++  L            +  +       A   GH NVI
Sbjct: 154 MAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI 213

Query: 173 DILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA------------------- 213
           + L++    L                +G+  +  ++  +                     
Sbjct: 214 NFLLDCPVMLA-------YAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFD 266

Query: 214 ----NVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP-----NATTNHGQTALNIAQK 264
               +           L + + +  +  I  LL                     L +A +
Sbjct: 267 LVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR 326

Query: 265 LGYISVIETL 274
           LG       L
Sbjct: 327 LGNQGACALL 336

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  106 bits (264), Expect = 7e-27
 Identities = 38/233 (16%), Positives = 68/233 (29%), Gaps = 25/233 (10%)

Query: 49  ENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAEL 108
           END + ++    L     +    A  L L         S      + +        + +L
Sbjct: 11  ENDPQLRLIPWILWENLFQHFISANELSLMT------LSYKEAIHIFLPGTKNMEQVRQL 64

Query: 109 LIQKHANVNNQAKHNI-----------TPLHVACKWG---KVAMVELLISKGANIEAKTR 154
           L   +A+ N  AK                  VA   G    +  + LL++    ++    
Sbjct: 65  LCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA 124

Query: 155 DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKA--GFTPLHIASHFGQLNMVRYLVENG 212
           +       AA +GH +V++ L E              +    +A+  G L+++  L E  
Sbjct: 125 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELA 184

Query: 213 ANVN---ATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
                        Y     A  +G   +I+ LL           H        
Sbjct: 185 PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKY 237

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 76.9 bits (188), Expect = 1e-16
 Identities = 26/214 (12%), Positives = 51/214 (23%), Gaps = 44/214 (20%)

Query: 1   MAAQENHDGVVRYLLSKGG--NQTLATEDGFTPLAVAMQQGHDRVVAVLLEN-------D 51
           +AA+  H  V+  L          +   + +    +A + GH  V+  L E         
Sbjct: 132 LAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAM 191

Query: 52  TKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQ 111
            + +        A  +        LL+                     YG   +   + +
Sbjct: 192 IQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA-------YAEIHEFEYGEKYVNPFIAR 244

Query: 112 KHA-----------------------NVNNQAKHNITPLHVACKWGKVAMVELLISKGA- 147
                                     +   Q  + +  L        +  +  L+S    
Sbjct: 245 HVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGI 304

Query: 148 ----NIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
                      D    L  A R G+     +L+ 
Sbjct: 305 KALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 57.2 bits (137), Expect = 5e-10
 Identities = 20/163 (12%), Positives = 41/163 (25%), Gaps = 26/163 (15%)

Query: 115 NVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDI 174
           N+ N        L     W  +     + +   ++   +      +        + V  +
Sbjct: 6   NIENYENDPQLRLIPWILWENL-FQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQL 64

Query: 175 LIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR 234
           L    A      K  ++  H      +                           A+  G 
Sbjct: 65  LCLYYAHYNRNAKQLWSDAHKKGIKSE----------------------VICFVAAITGC 102

Query: 235 VLIID---LLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
              +D   LLL +             A  +A + G++ V+  L
Sbjct: 103 SSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRL 145

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  106 bits (264), Expect = 3e-27
 Identities = 39/235 (16%), Positives = 81/235 (34%), Gaps = 21/235 (8%)

Query: 49  ENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSH-FTPLHIAAHYGNTNIAE 107
            N   G       H++      +          + ++  + H  TPLH      N  + +
Sbjct: 65  RNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVK 124

Query: 108 LLIQKHANVNNQAKHNITPLHVAC-------KWGKVAMVELLISKGANIEAKTRDGLTPL 160
            L++  +N         + L  A             A+++ L       ++  R  L  +
Sbjct: 125 HLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHI 184

Query: 161 ---------HCAARSGHDNVIDILIEKGAA-LYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
                      AA+   D ++  +++K    + S T    +  +  +   + +++  L  
Sbjct: 185 IITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL 244

Query: 211 N---GANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIA 262
                  +NA  + G T L+ A++ G + I+D LL  GA P      G   ++  
Sbjct: 245 KWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.5 bits (210), Expect = 9e-20
 Identities = 29/187 (15%), Positives = 63/187 (33%), Gaps = 24/187 (12%)

Query: 2   AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLEN--------DTK 53
                +  +V++L+  G N+      G + L  A++  ++                   +
Sbjct: 114 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE 173

Query: 54  GKVKLPALHIAAKKD-------------DCKAAALLLENDHSPDVKSNSHFTPLHIAAHY 100
             +    LH                   D     ++ + +      +N   +  +     
Sbjct: 174 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 233

Query: 101 GNTNIAELLIQKH---ANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGL 157
              +I E L  K      +N Q  +  T L++A + G +++V+ L+  GA+     + GL
Sbjct: 234 RKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGL 293

Query: 158 TPLHCAA 164
            P+   A
Sbjct: 294 RPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.3 bits (207), Expect = 2e-19
 Identities = 43/247 (17%), Positives = 89/247 (36%), Gaps = 21/247 (8%)

Query: 49  ENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAEL 108
           +N+ K K++     +   +      +L  ++ +      +S+    H++       + + 
Sbjct: 32  DNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDA 91

Query: 109 LIQKHANVNNQA-KHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSG 167
                 N+N    +H  TPLH       + +V+ L+  G+N       G + L  A +S 
Sbjct: 92  FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV 151

Query: 168 HD----NVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE------------- 210
           ++        +L      L  +     T LH       +       +             
Sbjct: 152 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK 211

Query: 211 NGANVNATTNLGYTPLHQASQQGRVLIIDLLL---GAGAQPNATTNHGQTALNIAQKLGY 267
               + + TN   +  +  + + +  I++ L          NA  ++G T LNIA +LG 
Sbjct: 212 QNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN 271

Query: 268 ISVIETL 274
           IS+++ L
Sbjct: 272 ISIVDAL 278

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.1 bits (113), Expect = 4e-07
 Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 2/130 (1%)

Query: 136 VAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT-KAGFTPLH 194
           + +++ L S   N   +       L          +   L    +   S+   +     H
Sbjct: 19  LKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQH 78

Query: 195 IASHFGQLNMVRYLVENGANVNATT-NLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN 253
           ++       +         N+N      G TPLH  +    + ++  L+  G+      N
Sbjct: 79  VSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN 138

Query: 254 HGQTALNIAQ 263
            G++ L  A 
Sbjct: 139 MGESCLVKAV 148

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVA 35
           +AA+  +  +V  LL  G +  +A + G  P+   
Sbjct: 265 IAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 299

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  104 bits (258), Expect = 1e-26
 Identities = 45/268 (16%), Positives = 90/268 (33%), Gaps = 28/268 (10%)

Query: 2   AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA- 60
                   +   +  +  N         T L              L+ ++ K  +   A 
Sbjct: 8   TEAAGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 66

Query: 61  -----------LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELL 109
                      L +A      +  A L++    P + + S  + LH AA   +  +   +
Sbjct: 67  VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYM 126

Query: 110 IQKHANVNNQ--------------AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRD 155
           +       +               A +       + K       ++     A  +++   
Sbjct: 127 LNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYK 186

Query: 156 GLTPLHCAARSGH-DNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
           G T LH AA+  +   V  ++ EKG+    + + G TP+ +A+  G++ +V YL++ GA+
Sbjct: 187 GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS 246

Query: 215 VNATTNLGYTPLHQASQQGRVLIIDLLL 242
           V A     +T    A       I+D+  
Sbjct: 247 VEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 93.6 bits (231), Expect = 7e-23
 Identities = 50/270 (18%), Positives = 92/270 (34%), Gaps = 56/270 (20%)

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELL--------IQK 112
           + +  +     A    +  +    +    + T LH  A   +   +E L        I  
Sbjct: 4   IKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA 63

Query: 113 HANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVI 172
            A+VN       TPL +A    +  +V  L+  GA+     +   + LH AA +    ++
Sbjct: 64  GADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMM 123

Query: 173 DILIEKGAALY-----------------------------------------------SK 185
             ++                                                      S+
Sbjct: 124 VYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSE 183

Query: 186 TKAGFTPLHIASHFGQLNMVRYLVE-NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 244
              G T LH A+    + +V+YLV   G+N +     G TP+  A+Q+GR+ ++  L+  
Sbjct: 184 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 243

Query: 245 GAQPNATTNHGQTALNIAQKLGYISVIETL 274
           GA   A      TA  +AQ   + ++++  
Sbjct: 244 GASVEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 80.9 bits (198), Expect = 3e-18
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 1/98 (1%)

Query: 81  HSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKH-ANVNNQAKHNITPLHVACKWGKVAMV 139
              D +     T LH AA   N  I + L+ +  +N + Q +   TP+ +A + G++ +V
Sbjct: 178 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVV 237

Query: 140 ELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
             LI +GA++EA      T    A  + H N++DI   
Sbjct: 238 MYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 70.1 bits (170), Expect = 1e-14
 Identities = 37/240 (15%), Positives = 72/240 (30%), Gaps = 58/240 (24%)

Query: 92  TPLHIA-AHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELL-------- 142
           +P+ +     G+  I E + ++  N+    +HN T LH           E L        
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 143 ISKGANIEAKTRDGLTPLHCAA---------------------------------RSGHD 169
           I+ GA++ A   D  TPL  A                                   +   
Sbjct: 61  IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDF 120

Query: 170 NVIDILIEKGAALYSKT--------------KAGFTPLHIASHFGQLNMVRYLVENGANV 215
            ++  ++                                 ++        +   +  A  
Sbjct: 121 GMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARK 180

Query: 216 NATTNLGYTPLHQASQQGRV-LIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           ++    G T LH A+Q   + ++  L+   G+  +     G+T + +A + G I V+  L
Sbjct: 181 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL 240

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 56.3 bits (134), Expect = 9e-10
 Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 27  DGFTPLAVAMQQGHDRVVAVLLEND-----TKGKVKLPALHIAAKKDDCKAAALLLENDH 81
            G T L  A Q  +  +V  L+         + +     + +AA++   +    L++   
Sbjct: 186 KGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA 245

Query: 82  SPDVKSNSHFTPLHIAAHYGNTNIAELLIQ 111
           S +    +  T   +A    + NI ++  +
Sbjct: 246 SVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 49.7 bits (117), Expect = 1e-07
 Identities = 13/49 (26%), Positives = 20/49 (40%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLE 49
           +AAQE    VV YL+ +G +         T   +A    H  +V +   
Sbjct: 227 LAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.7 bits (236), Expect = 6e-24
 Identities = 61/226 (26%), Positives = 99/226 (43%), Gaps = 13/226 (5%)

Query: 26  EDGFTPLAVAMQQGHDRVVAVLLEN--------DTKGKVKLPALHIAAKKDDCKAAALLL 77
           EDG TPL +A+ QG+   V  L+          D    ++   LH+A          LL+
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 60

Query: 78  ENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNI----TPLHVACKW 133
               SP        T  H+A  + +      L+   A      +       T LHVA   
Sbjct: 61  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 120

Query: 134 GKVAMVELLISKGANIEAKTR-DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTP 192
                V+LL+ +GA+I+A     G +PL  A  +   +++ +L++ GA + ++  +G + 
Sbjct: 121 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSA 180

Query: 193 LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII 238
           LH AS  G L +VR LV +GA+ +       TPL  A  +  + I+
Sbjct: 181 LHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.3 bits (209), Expect = 4e-20
 Identities = 44/219 (20%), Positives = 85/219 (38%), Gaps = 13/219 (5%)

Query: 1   MAAQENHDGVVRYLLS----KGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKG-- 54
           +A  + +   V  L++     G    +      TPL +A+      VV +L+        
Sbjct: 9   IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMA 68

Query: 55  ------KVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAEL 108
                      A    +                  + ++    T LH+A +       +L
Sbjct: 69  LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQL 128

Query: 109 LIQKHANVNNQAKHNIT-PLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSG 167
           L+++ A+++     +   PL  A +   ++MV+LL+  GAN+ A+   G + LH A+  G
Sbjct: 129 LLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRG 188

Query: 168 HDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVR 206
              ++  L+  GA    K     TPL +A     ++++R
Sbjct: 189 LLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 8e-09
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 4/104 (3%)

Query: 155 DGLTPLHCAARSGHDNVIDILI----EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
           DG TPLH A   G+   +  L+    + G  L        TPLH+A      ++VR LV 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 211 NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNH 254
            GA+  A    G T  H A +      +  LL + A        
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA 105

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 2e-06
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 222 GYTPLHQASQQGRV----LIIDLLLGAGAQPNATTNHGQTALNIAQK 264
           G TPLH A  QG +     +++L    G + +   N  QT L++A  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVI 49

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 88.3 bits (217), Expect = 2e-21
 Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 6/206 (2%)

Query: 42  RVVAVLLE-----NDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHI 96
           +V++ LL      N T  K    +LH+AA+     AA  LL+     + + N+  TPLH 
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 97  AAHYGNTNIAELLIQKHANVNNQAKHNI-TPLHVACKWGKVAMVELLISKGANIEAKTRD 155
           A       + ++L++  A   N   H+  TPL +A +     MVE LI+  A+I A    
Sbjct: 63  AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNS 122

Query: 156 GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANV 215
           G T LH AA   +   ++IL+   A   ++     TPL +A+  G     + L++N AN 
Sbjct: 123 GKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR 182

Query: 216 NATTNLGYTPLHQASQQGRVLIIDLL 241
             T ++   P   AS++    I+ LL
Sbjct: 183 EITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 87.2 bits (214), Expect = 4e-21
 Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 2/202 (0%)

Query: 75  LLLENDHSPDVKSNSH-FTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKW 133
            LL      +   +    T LH+AA +   + A+ L+   A+ N+Q     TPLH A   
Sbjct: 7   DLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAA 66

Query: 134 GKVAMVELLISK-GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTP 192
             + + ++L+     N+ A+  DG TPL  AAR   + +++ LI   A + +   +G T 
Sbjct: 67  DAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTA 126

Query: 193 LHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATT 252
           LH A+       V  L+ + AN +A  +   TPL  A+++G       LL   A    T 
Sbjct: 127 LHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITD 186

Query: 253 NHGQTALNIAQKLGYISVIETL 274
           +  +   ++A +  +  ++  L
Sbjct: 187 HMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 86.8 bits (213), Expect = 7e-21
 Identities = 48/205 (23%), Positives = 73/205 (35%), Gaps = 6/205 (2%)

Query: 10  VVRYLLSKGGNQTLAT-EDGFTPLAVAMQQGHDRVVAVLLENDTKG-----KVKLPALHI 63
           V+  LL++G        + G T L +A +         LL+            + P    
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 63

Query: 64  AAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHN 123
            A         LL     + + + +   TPL +AA      + E LI   A++N      
Sbjct: 64  VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSG 123

Query: 124 ITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 183
            T LH A        V +L+   AN +A+     TPL  AAR G       L++  A   
Sbjct: 124 KTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANRE 183

Query: 184 SKTKAGFTPLHIASHFGQLNMVRYL 208
                   P  +AS     ++VR L
Sbjct: 184 ITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 237 IIDLLLGAGAQPNATTN-HGQTALNIAQKLGYISVIETL 274
           +I  LL  GA+ NAT +  G+T+L++A +       + L
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.8 bits (200), Expect = 7e-19
 Identities = 48/226 (21%), Positives = 85/226 (37%), Gaps = 15/226 (6%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLAT-EDGFTPLAVAMQQGHDRVVAVLLEN--------- 50
            A  EN    V+ LL    +  L   +DG  PL  ++      + + LL           
Sbjct: 6   QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY 65

Query: 51  DTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLI 110
                     +  +    +   +          +  +N   T LH+A       +++ LI
Sbjct: 66  PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 125

Query: 111 QKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGAN-IEAKTRDGLTPLHCAARSGHD 169
           +  A+V  + K N  PLH A   G + ++ELL   G + +  + + G TPL  A   GH 
Sbjct: 126 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 185

Query: 170 NVIDILIEK-GAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN 214
           +   +L+EK GA        G     +A +     + ++ + N  +
Sbjct: 186 DAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.7 bits (192), Expect = 8e-18
 Identities = 47/229 (20%), Positives = 75/229 (32%), Gaps = 15/229 (6%)

Query: 30  TPLAVAMQQGHDRVVAVLLE-----NDTKGKVKLPALHIAAKKDDCKAAALLLEN----- 79
            PL  A  +     V  LL         K +     LH +      +  + LL       
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 80  DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMV 139
                  S      +  +        +        ++N      +T LH+A       + 
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 140 ELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAA-LYSKTKAGFTPLHIASH 198
           + LI  GA++  K +    PLH AA  G   +I++L   G + +  + K G+TPL  A  
Sbjct: 122 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 181

Query: 199 FGQLNMVRYLVEN-GANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA 246
            G  +    LVE  GA  +   N G      A  +    +    L    
Sbjct: 182 EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ---VKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.3 bits (191), Expect = 1e-17
 Identities = 52/213 (24%), Positives = 81/213 (38%), Gaps = 8/213 (3%)

Query: 60  ALHIAAKKDDCKAAALLLENDHS-PDVKSNSHFTPLHIAAHYGNTNIAELLIQK-----H 113
            LH A  +++      LL +  S    K      PLH +  +    I   L+ K      
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 114 ANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVID 173
            +  + +      +  +    +V           ++   T  G+T LH A       V  
Sbjct: 63  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 122

Query: 174 ILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGAN-VNATTNLGYTPLHQASQQ 232
            LIE GA++  K K    PLH A+  G L ++  L   G + VN     G+TPL  A  +
Sbjct: 123 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 182

Query: 233 GRVLIIDLLLGA-GAQPNATTNHGQTALNIAQK 264
           G      LL+   GA+ +   N G  A ++A  
Sbjct: 183 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 215

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.9 bits (151), Expect = 3e-12
 Identities = 33/141 (23%), Positives = 50/141 (35%), Gaps = 6/141 (4%)

Query: 125 TPLHVACKWGKVAMV-ELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG---- 179
            PLH AC   +   V ELL SK + +  K +DG  PLH +       +   L+ K     
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 180 -AALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII 238
                  +      +  +    ++    Y      ++N  TN G T LH A  +    + 
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 239 DLLLGAGAQPNATTNHGQTAL 259
             L+  GA         Q  L
Sbjct: 122 QFLIENGASVRIKDKFNQIPL 142

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (189), Expect = 2e-17
 Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 32/229 (13%)

Query: 27  DGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVK 86
           DG + L +A+      +   ++                           +  +    + +
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIR-------------------------QVKGDLAFLNFQ 35

Query: 87  SNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKG 146
           +N   TPLH+A       IAE L+    +   +     TPLH+AC+ G +A V +L    
Sbjct: 36  NNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSC 95

Query: 147 ANIEAKTR------DGLTPLHCAARSGHDNVIDILIEKGAALYSKTKA-GFTPLHIASHF 199
                 +       +G T LH A+  G+  ++++L+  GA + ++    G T LH+A   
Sbjct: 96  TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL 155

Query: 200 GQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP 248
              ++V  L++ GA+VN  T  GY+P      +    I   L     + 
Sbjct: 156 QNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 204

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.7 bits (184), Expect = 9e-17
 Identities = 52/195 (26%), Positives = 78/195 (40%), Gaps = 11/195 (5%)

Query: 92  TPLHIAAHYGNTNIA----ELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGA 147
           + LH+A  +    +       +    A +N Q     TPLH+A    +  + E L+  G 
Sbjct: 4   SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC 63

Query: 148 NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFT------PLHIASHFGQ 201
           + E +   G TPLH A   G    + +L +     +  +    T       LH+AS  G 
Sbjct: 64  DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY 123

Query: 202 LNMVRYLVENGANVNATTNL-GYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALN 260
           L +V  LV  GA+VNA     G T LH A       ++ LLL  GA  N  T  G +   
Sbjct: 124 LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ 183

Query: 261 IAQKLGYISVIETLK 275
           +        + + L 
Sbjct: 184 LTWGRPSTRIQQQLG 198

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (175), Expect = 2e-15
 Identities = 36/195 (18%), Positives = 63/195 (32%), Gaps = 15/195 (7%)

Query: 1   MAAQENHDG----VVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKV 56
           +A           V+R +               TPL +A+      +   LL      ++
Sbjct: 8   LAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL 67

Query: 57  KLPALHIAAKKDDCK----------AAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIA 106
           +    +        +           +             + +  T LH+A+ +G   I 
Sbjct: 68  RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV 127

Query: 107 ELLIQKHANVNNQAKHN-ITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAAR 165
           ELL+   A+VN Q   N  T LH+A       +V LL+  GA++   T  G +P      
Sbjct: 128 ELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWG 187

Query: 166 SGHDNVIDILIEKGA 180
                +   L +   
Sbjct: 188 RPSTRIQQQLGQLTL 202

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 9e-06
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 4/47 (8%)

Query: 222 GYTPLHQASQQGRV----LIIDLLLGAGAQPNATTNHGQTALNIAQK 264
           G + LH A           +I  + G  A  N   N  QT L++A  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI 48

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 12/59 (20%), Positives = 23/59 (38%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLP 59
           +A    +  +V  LL  G +    T  G++P  +   +   R+   L +   +    LP
Sbjct: 151 LAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP 209

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.5 bits (181), Expect = 6e-17
 Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 1/150 (0%)

Query: 92  TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
             L  AA  G  +   +L+   A          +PLH+A ++G  +  E+L+  G + +A
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTD-WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN 211
           +T+   TPLH AA  GH N++++L++ GA + +K     T LH A+      +V  L++ 
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122

Query: 212 GANVNATTNLGYTPLHQASQQGRVLIIDLL 241
           GA+V+  +    T    +   G   + ++L
Sbjct: 123 GADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.3 bits (170), Expect = 2e-15
 Identities = 48/151 (31%), Positives = 82/151 (54%), Gaps = 1/151 (0%)

Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
             L  A + G+   V +L++ GA        G +PLH AA+ GH +  ++L+  G +  +
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 244
           +TK   TPLH+A+  G  N+V  L+++GA+VNA   L  T LH A++     +++LL+  
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122

Query: 245 GAQPNATTNHGQTALNIAQKLGYISVIETLK 275
           GA  +  +   +TA +I+   G   + E L+
Sbjct: 123 GADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.3 bits (157), Expect = 1e-13
 Identities = 45/152 (29%), Positives = 76/152 (50%), Gaps = 3/152 (1%)

Query: 27  DGFTPLAVAMQQGHDRVVAVLLE---NDTKGKVKLPALHIAAKKDDCKAAALLLENDHSP 83
           D    L  A + G D  V +L+      T   +    LH+AA+        +LL    S 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 84  DVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLI 143
           D ++    TPLH+AA  G+ NI E+L++  A+VN +    +T LH A +     +VELLI
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120

Query: 144 SKGANIEAKTRDGLTPLHCAARSGHDNVIDIL 175
             GA++  +++   T    +  +G++++ +IL
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.7 bits (177), Expect = 2e-16
 Identities = 30/147 (20%), Positives = 51/147 (34%), Gaps = 9/147 (6%)

Query: 124 ITPLHVACKWGKVAMVELLISKGANIEAKT------RDGLTPLHCAARSGHDNVIDI--- 174
           +  L  A K   +  +    + G ++  K           T LH A RS     + I   
Sbjct: 7   LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDF 66

Query: 175 LIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGR 234
           L++    L  +T  G T LH          ++ L+   A++      G TPL  A +   
Sbjct: 67  LVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKH 126

Query: 235 VLIIDLLLGAGAQPNATTNHGQTALNI 261
               +LL  A +    +  H +    +
Sbjct: 127 EHCEELLTQALSGRFNSHVHVEYEWRL 153

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.5 bits (174), Expect = 7e-16
 Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 9/141 (6%)

Query: 54  GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSH------FTPLHIAA---HYGNTN 104
              KL +L  A K  D         +      K           T LH+A       + +
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 105 IAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAA 164
           I + L+Q   N++ Q     T LH  C       ++LL+   A+IE     G TPL  A 
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 122

Query: 165 RSGHDNVIDILIEKGAALYSK 185
           R  H++  ++L +  +  ++ 
Sbjct: 123 RLKHEHCEELLTQALSGRFNS 143

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.8 bits (154), Expect = 4e-13
 Identities = 23/137 (16%), Positives = 50/137 (36%), Gaps = 9/137 (6%)

Query: 87  SNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNI------TPLHVACK---WGKVA 137
           + +    L  A    +            ++  +           T LH+A +      + 
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 138 MVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIAS 197
           +V+ L+    N++ +T  G T LH    + +   + +L+   A++    ++G TPL IA 
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 122

Query: 198 HFGQLNMVRYLVENGAN 214
                +    L +  + 
Sbjct: 123 RLKHEHCEELLTQALSG 139

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.4 bits (140), Expect = 3e-11
 Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 9/133 (6%)

Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGA------ALYSKTKAGFTPLHI---ASHFGQ 201
           A T   L  L  A ++     +      G        L +  +   T LH+   +     
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 202 LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNI 261
           L++V +LV+N  N++  T  G T LH          + LLL   A        G+T L+I
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 120

Query: 262 AQKLGYISVIETL 274
           A++L +    E L
Sbjct: 121 AKRLKHEHCEELL 133

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (152), Expect = 4e-13
 Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 3/126 (2%)

Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
             L  +   G+  +V+ +I +  +      +G+T LH A  +GH  ++  L++ G  + +
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGY---TPLHQASQQGRVLIIDLL 241
               G+TPLH A+    + + ++LVE+GA V A T           +  ++G       L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 242 LGAGAQ 247
            G   +
Sbjct: 123 YGVQEK 128

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 4e-12
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 3/127 (2%)

Query: 92  TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
             L  ++  G  ++ + +I +  + +      IT LH A   G   +V+ L+  G N+ A
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGF---TPLHIASHFGQLNMVRYL 208
              DG TPLHCAA   +  V   L+E GAA+++ T +              G     ++L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 209 VENGANV 215
                 +
Sbjct: 123 YGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 5e-12
 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 3/128 (2%)

Query: 58  LPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN 117
           L  L  ++ + +      ++     P + ++   T LH A   G+T I + L+Q   NVN
Sbjct: 2   LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN 61

Query: 118 NQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGL---TPLHCAARSGHDNVIDI 174
                  TPLH A     V + + L+  GA + A T   +            G+      
Sbjct: 62  AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 121

Query: 175 LIEKGAAL 182
           L      +
Sbjct: 122 LYGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 32/151 (21%)

Query: 2   AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPAL 61
           ++ E    +V+ ++ +  + +L  ++G T L  A+  GH                     
Sbjct: 8   SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH--------------------- 46

Query: 62  HIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVN---N 118
                    +    L++   + +   +  +TPLH AA   N  + + L++  A V     
Sbjct: 47  --------TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTY 98

Query: 119 QAKHNITPLHVACKWGKVAMVELLISKGANI 149
                        + G     + L      +
Sbjct: 99  SDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 129

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (144), Expect = 7e-12
 Identities = 44/155 (28%), Positives = 66/155 (42%), Gaps = 2/155 (1%)

Query: 92  TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
             L  AA  G+      L+Q + NVN Q     T L V           L + +GAN + 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRL-LLRGANPDL 61

Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQL-NMVRYLVE 210
           K R G   +H AAR+G  + +  L+E  A +  +   G  PLH+A+  G L  +   +  
Sbjct: 62  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 121

Query: 211 NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 245
             +NV    + G T    A   GR  ++ L+   G
Sbjct: 122 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 2e-10
 Identities = 24/153 (15%), Positives = 47/153 (30%)

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
            L  AA + D +    LL+N+ + + ++    T L +           LL++        
Sbjct: 4   ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKD 63

Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 179
                     A       +  LL  +           L     A       V  ++    
Sbjct: 64  RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 123

Query: 180 AALYSKTKAGFTPLHIASHFGQLNMVRYLVENG 212
           + +  +   G T   +A  +G+  +V  +  NG
Sbjct: 124 SNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (118), Expect = 3e-08
 Identities = 26/154 (16%), Positives = 48/154 (31%), Gaps = 4/154 (2%)

Query: 30  TPLAVAMQQGHDRVVAVLLEN----DTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDV 85
             LA A  +G    +  LL+N    + +      AL +    +   A  LLL   +    
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 86  KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK 145
                      A       +  LL  +        + N+     A +     +  L+   
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 146 GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKG 179
            +N+  +   G T    A   G + V+ ++   G
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 1e-07
 Identities = 21/150 (14%), Positives = 36/150 (24%), Gaps = 4/150 (2%)

Query: 1   MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPA 60
            AA       +  LL    N       G T L V      +    +LL            
Sbjct: 7   SAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKDRTG 66

Query: 61  LHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIA----ELLIQKHANV 116
             +            L          +                        L+    +NV
Sbjct: 67  FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 126

Query: 117 NNQAKHNITPLHVACKWGKVAMVELLISKG 146
            ++     T   +A  +G+  +V L+ + G
Sbjct: 127 GHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.001
 Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 33/150 (22%)

Query: 158 TPLHCAARSGHDNVIDILIEKGAALYSKTKAG---------------------------- 189
             L  AA  G    +  L++    + ++   G                            
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 190 ----FTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG 245
               F  +H A+  G L+ ++ L+E  A+VN   N G  PLH A+++G + +++ L+   
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 246 AQP-NATTNHGQTALNIAQKLGYISVIETL 274
           A       + G TA ++A+  G   V+  +
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLM 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 1e-10
 Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 3/153 (1%)

Query: 92  TPLHIAAHYGNTNIAELLIQKH-ANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIE 150
             L  AA  G+      L+ +   + +   +   T L V         +ELL    +   
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 151 AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
             T    +P+H AAR+G  + + +L+E GA +      G  P+H+A   G   +V + + 
Sbjct: 64  QDTSGT-SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF-LA 121

Query: 211 NGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
             ++++     G TPL  A Q+G   ++D+L G
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 4e-10
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 3/151 (1%)

Query: 125 TPLHVACKWGKVAMV-ELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALY 183
             L  A   G V  V  LL  +  + +A  R G T L           +++L +  +   
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP-N 62

Query: 184 SKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG 243
            +  +G +P+H A+  G L+ ++ LVE+GA+VN     G  P+H A Q+G   ++  L  
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA- 121

Query: 244 AGAQPNATTNHGQTALNIAQKLGYISVIETL 274
           A +  +     G T L +A + G   +++ L
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 2e-08
 Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 13/158 (8%)

Query: 28  GFTPLAVAMQQGHDRVVAVLLEN--------DTKGKVKLPALHIAAKKDDCKAAALLLEN 79
               L+ A  +G  + V  LL          +  GK  L  +   +     +      + 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELL----KQ 57

Query: 80  DHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMV 139
             SP+V+  S  +P+H AA  G  +  ++L++  A+VN        P+H+A + G  A+V
Sbjct: 58  GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV 117

Query: 140 ELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
             L    +++  +   GLTPL  A + G  +++DIL  
Sbjct: 118 SFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 1e-07
 Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 5/148 (3%)

Query: 1   MAAQENHDGVVRYLLSKGG-NQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLP 59
            AA       VR LL +   +       G T L V M       + +L +  +       
Sbjct: 8   GAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTS 67

Query: 60  ALHIAAKKDDCKAAALLLEND---HSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANV 116
                           L          +V   +   P+H+A   G+T +   L    +++
Sbjct: 68  GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDL 126

Query: 117 NNQAKHNITPLHVACKWGKVAMVELLIS 144
           + +    +TPL +A + G   +V++L  
Sbjct: 127 HRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 0.004
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 187 KAGFTPLHIASHFGQLNMVRYLVE-NGANVNATTNLGYTPLHQ 228
           +AG   L  A+  G +  VR L+     + +A    G T L  
Sbjct: 1   RAG-DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV 42

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (130), Expect = 3e-10
 Identities = 30/117 (25%), Positives = 44/117 (37%)

Query: 92  TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
             L  AA  G       L++  AN N    +   P+ V           LL+       A
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCA 64

Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYL 208
                  P+H AAR G  + + +L   GA L  +   G  P+ +A   G  ++ RYL
Sbjct: 65  DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 121

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (122), Expect = 4e-09
 Identities = 27/120 (22%), Positives = 42/120 (35%)

Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
             L  A   G+V  V  L+  GAN  A    G  P+             +L+       +
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCA 64

Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA 244
                  P+H A+  G L+ +  L   GA ++     G  P+  A + G   +   L  A
Sbjct: 65  DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 1e-08
 Identities = 24/118 (20%), Positives = 43/118 (36%)

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
            L  AA +   +    LLE   +P+  ++    P+ +           LL+         
Sbjct: 6   WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCAD 65

Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
                 P+H A + G +  + +L   GA ++ +   G  P+  A   GH +V   L  
Sbjct: 66  PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 1e-05
 Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 4/123 (3%)

Query: 26  EDGFTPLAVAMQQGHDRVVAVLLE----NDTKGKVKLPALHIAAKKDDCKAAALLLENDH 81
           E     LA A  +G    V  LLE     +         + +        A  LLL    
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAE 60

Query: 82  SPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVEL 141
                  +   P+H AA  G  +   +L +  A ++ +      P+ +A + G   +   
Sbjct: 61  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 120

Query: 142 LIS 144
           L +
Sbjct: 121 LRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 5e-05
 Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 4/115 (3%)

Query: 1   MAAQENHDGVVRYLLSKGGN----QTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKV 56
            AA       VR LL  G N     +         +  + +     ++     N      
Sbjct: 9   TAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCADPAT 68

Query: 57  KLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQ 111
               +H AA++       +L       DV+      P+ +A   G+ ++A  L  
Sbjct: 69  LTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 123

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.4 bits (121), Expect = 6e-09
 Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 4/119 (3%)

Query: 92  TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEA 151
                A   G+ +  +  + K  +VN   +    PLH A   G++ ++E L+ KGA+I A
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 63

Query: 152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVE 210
             +  +TPL  A   GH + + +L+ KGA    K   G T L    +      ++ L++
Sbjct: 64  PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDN----QAIKALLQ 118

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.4 bits (108), Expect = 3e-07
 Identities = 39/118 (33%), Positives = 52/118 (44%), Gaps = 4/118 (3%)

Query: 60  ALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ 119
               A K  D       +      +        PLH AA  G   I E L+ K A++N  
Sbjct: 5   EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 64

Query: 120 AKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIE 177
            KH+ITPL  A   G V+ V+LL+SKGA+   K  DGLT L        +  I  L++
Sbjct: 65  DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT----DNQAIKALLQ 118

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.3 bits (105), Expect = 7e-07
 Identities = 31/114 (27%), Positives = 51/114 (44%)

Query: 125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYS 184
                A K G +  V+  ++KG ++      G  PLH AA  G   +++ L+ KGA + +
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 63

Query: 185 KTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLII 238
             K   TPL  A + G ++ V+ L+  GA+       G T L     Q    ++
Sbjct: 64  PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQAIKALL 117

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.7 bits (93), Expect = 3e-05
 Identities = 32/115 (27%), Positives = 52/115 (45%)

Query: 158 TPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNA 217
                A ++G  + +   + KG  +    + G  PLH A+  GQL ++ +L+  GA++NA
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 63

Query: 218 TTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIE 272
                 TPL  A  +G V  + LLL  GA        G TAL         ++++
Sbjct: 64  PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQAIKALLQ 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	318
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.98
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.95
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.93
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.89

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-48  Score=328.06  Aligned_cols=281  Identities=42%  Similarity=0.683  Sum_probs=229.0

Q ss_pred             CccccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHH-
Q psy4998           1 MAAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAAL-   75 (318)
Q Consensus         1 lA~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~-   75 (318)
                      +||..|++++|++|+++|++++..|..|.||||+|+..|+.+++++|+++|++    +..+.|||++|+..|+.+++++ 
T Consensus         6 ~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~~~~L   85 (408)
T d1n11a_           6 VASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLL   85 (408)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            48999999999999999999999999999999999999999999999998654    4556677777777766655554 


Q ss_pred             -----------------------------------------------------------------HHhCCCCCCCCCCCC
Q psy4998          76 -----------------------------------------------------------------LLENDHSPDVKSNSH   90 (318)
Q Consensus        76 -----------------------------------------------------------------ll~~~~~~~~~~~~~   90 (318)
                                                                                       |++++.+++..+..+
T Consensus        86 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~  165 (408)
T d1n11a_          86 LENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG  165 (408)
T ss_dssp             HHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSC
T ss_pred             HHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcC
Confidence                                                                             444455555555566


Q ss_pred             chHHHHHHHcCCHHHHHHHHhccCCcccccC---------------------------------CCChHHHHHHHcCcHH
Q psy4998          91 FTPLHIAAHYGNTNIAELLIQKHANVNNQAK---------------------------------HNITPLHVACKWGKVA  137 (318)
Q Consensus        91 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~---------------------------------~~~~~l~~a~~~~~~~  137 (318)
                      .+||++|+..++.+++++|+++|++++..+.                                 .+.||++.|+..+..+
T Consensus       166 ~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~  245 (408)
T d1n11a_         166 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE  245 (408)
T ss_dssp             CCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             chHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHh
Confidence            6666666666666666666666655433222                                 2334455555555555


Q ss_pred             HHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCc
Q psy4998         138 MVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNA  217 (318)
Q Consensus       138 ~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~  217 (318)
                      +++++...+...+..+..|.+|++.++..++.+++++|+++|++++..+..+.|||+.++..++.++++++++.|++++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~  325 (408)
T d1n11a_         246 MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA  325 (408)
T ss_dssp             HHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTC
T ss_pred             HhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccccc
Confidence            55555555555556666778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccc
Q psy4998         218 TTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETT  281 (318)
Q Consensus       218 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  281 (318)
                      +|..|.||||+|++.|+.+++++|+++|+|++.+|..|.|||++|++.|+.++|++|+......
T Consensus       326 ~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~~~~~  389 (408)
T d1n11a_         326 KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDET  389 (408)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999999998775543

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-40  Score=257.53  Aligned_cols=218  Identities=28%  Similarity=0.361  Sum_probs=202.9

Q ss_pred             ChhHHHHHHhCCCHHHHHHHHh-CCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCc
Q psy4998          57 KLPALHIAAKKDDCKAAALLLE-NDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGK  135 (318)
Q Consensus        57 ~~~~l~~A~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~  135 (318)
                      +.+.++.++..|+.+.++.++. .+..++..|..|+||||+|+..|+.++++++++.+.........+.++++.++..++
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGR   82 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccc
Confidence            3467888888899888876654 566788889999999999999999999999999999888888888999999999999


Q ss_pred             HHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCC
Q psy4998         136 VAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANV  215 (318)
Q Consensus       136 ~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~  215 (318)
                      .+++++|++.+.+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..+..+++++|++.|.++
T Consensus        83 ~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i  162 (223)
T d1uoha_          83 DEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST  162 (223)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             cchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhcccccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhh
Q psy4998         216 NATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLK  275 (318)
Q Consensus       216 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~  275 (318)
                      +.++..|.||||+|+..|+.+++++|+++|+|++.+|..|+||+++|. .|+.+++++|.
T Consensus       163 ~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll  221 (223)
T d1uoha_         163 NIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMV  221 (223)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTHHHHHHHHH
T ss_pred             eeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCHHHHhccc
Confidence            999999999999999999999999999999999999999999999984 68999998875

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-40  Score=277.71  Aligned_cols=254  Identities=35%  Similarity=0.542  Sum_probs=200.6

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHH
Q psy4998          29 FTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTN  104 (318)
Q Consensus        29 ~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~  104 (318)
                      .||||.||..|+.++|++|++.|++    +..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~   80 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN   80 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHH
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            3899999999999999999998754    566889999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHhccC------------------------------------------------------------------Cccc
Q psy4998         105 IAELLIQKHA------------------------------------------------------------------NVNN  118 (318)
Q Consensus       105 ~~~~ll~~~~------------------------------------------------------------------~~~~  118 (318)
                      ++++|+....                                                                  +++.
T Consensus        81 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~  160 (408)
T d1n11a_          81 MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA  160 (408)
T ss_dssp             HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence            7777765433                                                                  2333


Q ss_pred             ccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCC---------------------------------ChHHHHHHH
Q psy4998         119 QAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG---------------------------------LTPLHCAAR  165 (318)
Q Consensus       119 ~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~---------------------------------~~~l~~a~~  165 (318)
                      .+..|.+||++|+..++.+++++|+.+|.+++..+..+                                 .||++.|+.
T Consensus       161 ~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~  240 (408)
T d1n11a_         161 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQ  240 (408)
T ss_dssp             CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHH
Confidence            34445555555555555555555555554444333222                                 233333444


Q ss_pred             cCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCC
Q psy4998         166 SGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAG  245 (318)
Q Consensus       166 ~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g  245 (318)
                      .+..++++++...+...+..+..|.||++.|+..++.+++++|+++|++++..+..+.|||+.++..+..+++++++++|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g  320 (408)
T d1n11a_         241 EGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ  320 (408)
T ss_dssp             TTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT
T ss_pred             hCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeecccc
Confidence            44444444444444444555667778888889999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccce
Q psy4998         246 AQPNATTNHGQTALNIAQKLGYISVIETLKIVTETTI  282 (318)
Q Consensus       246 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~  282 (318)
                      ++++.+|..|.||||+|++.|+.++|++|...+.+..
T Consensus       321 ~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n  357 (408)
T d1n11a_         321 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN  357 (408)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             ccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            9999999999999999999999999999999887643

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-39  Score=258.60  Aligned_cols=252  Identities=28%  Similarity=0.360  Sum_probs=190.9

Q ss_pred             ccccChHHHHHHHHhcCCCCCcCC-CCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHH
Q psy4998           2 AAQENHDGVVRYLLSKGGNQTLAT-EDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALL   76 (318)
Q Consensus         2 A~~~g~~~~v~~Ll~~g~~~~~~~-~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~l   76 (318)
                      |++.|+.++|++|+++|++++.++ ..|+||||+|+..|+.+++++|++.+..    .....++.+.|+..+..+...+.
T Consensus        12 Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (285)
T d1wdya_          12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLF   91 (285)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchh
Confidence            788888888888888888887654 4688888888888888888888887554    33445678888888888888888


Q ss_pred             HhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccc----------cCCCChHHHHHHHcCcHHHHHHHHHc-
Q psy4998          77 LENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQ----------AKHNITPLHVACKWGKVAMVELLISK-  145 (318)
Q Consensus        77 l~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~~~L~~~-  145 (318)
                      ++...+....+..+.++++.|+..++...++.++......+..          ...|.|||++|+..|+.+++++|++. 
T Consensus        92 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~  171 (285)
T d1wdya_          92 LSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM  171 (285)
T ss_dssp             HHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTS
T ss_pred             hhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhcc
Confidence            8877776667777888888888888888888887765554332          23467788888888888888888764 


Q ss_pred             CCCCCccCCCCChHHHHHHHcC----CHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHc-CCCCCcCCC
Q psy4998         146 GANIEAKTRDGLTPLHCAARSG----HDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVEN-GANVNATTN  220 (318)
Q Consensus       146 ~~~~~~~~~~~~~~l~~a~~~~----~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~  220 (318)
                      |++++..+..+.+++..+...+    ..+++++|+++|++++.++..|.||||.|+..++.+++++|+++ |++++.+|.
T Consensus       172 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~  251 (285)
T d1wdya_         172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS  251 (285)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCT
T ss_pred             CCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCC
Confidence            6777777777776666554433    34677778888888877777788888888888888888888764 778888887


Q ss_pred             CCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCC
Q psy4998         221 LGYTPLHQASQQGRVLIIDLLLGAGAQPNATTN  253 (318)
Q Consensus       221 ~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  253 (318)
                      +|.||||+|++.|+.+++++|+++|+|++.+|.
T Consensus       252 ~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         252 DGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            888888888888888888888888888877763

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-39  Score=258.71  Aligned_cols=226  Identities=26%  Similarity=0.290  Sum_probs=137.0

Q ss_pred             CcCCCCCCCHHHHHHHcCCHHHHHHHHhcCC-------CCCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHH
Q psy4998          22 TLATEDGFTPLAVAMQQGHDRVVAVLLENDT-------KGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPL   94 (318)
Q Consensus        22 ~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~-------~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l   94 (318)
                      .+.+++|.||||+||.+|+.+++++|+++++       .+..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL   82 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhh
Confidence            4678899999999999999999999998754       345678999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhccCCcccccCCCC----------hHHHHHHHcCc----HHHHHHHHHcCCCCCccCCCCChHH
Q psy4998          95 HIAAHYGNTNIAELLIQKHANVNNQAKHNI----------TPLHVACKWGK----VAMVELLISKGANIEAKTRDGLTPL  160 (318)
Q Consensus        95 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~----------~~l~~a~~~~~----~~~~~~L~~~~~~~~~~~~~~~~~l  160 (318)
                      ++|+..++.+++++|++.............          .....+.....    ..........+..++.++..|.|||
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpL  162 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             hhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccc
Confidence            999999999999999887654322111000          00000000000    0001111111233334444455555


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCcCC-CCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHH
Q psy4998         161 HCAARSGHDNVIDILIEKGAALYSK-TKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIID  239 (318)
Q Consensus       161 ~~a~~~~~~~~~~~ll~~~~~~~~~-~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~  239 (318)
                      |+|+..++.+++++|++++.+.+.. +..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..++.++++
T Consensus       163 h~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~  242 (255)
T d1oy3d_         163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR  242 (255)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred             cccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence            5555555555555555554444432 334555555555555555555555555555555555555555555555555555


Q ss_pred             HHHhCCCC
Q psy4998         240 LLLGAGAQ  247 (318)
Q Consensus       240 ~Ll~~g~~  247 (318)
                      +|+++||+
T Consensus       243 ~Ll~~Ga~  250 (255)
T d1oy3d_         243 LLRAHGAP  250 (255)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHcCCC
Confidence            55555553

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-38  Score=247.56  Aligned_cols=215  Identities=27%  Similarity=0.344  Sum_probs=186.5

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcC-----CCCCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCC
Q psy4998          28 GFTPLAVAMQQGHDRVVAVLLEND-----TKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGN  102 (318)
Q Consensus        28 ~~t~l~~A~~~g~~~~~~~ll~~~-----~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~  102 (318)
                      +.+.|+.++..|+++.++.++...     ..+..|.||||+|+..|+.+++++++..+.........+.++++.++..++
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGR   82 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccc
Confidence            346777788888888877776543     336667788888888888888888888887777777788889999999999


Q ss_pred             HHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCC
Q psy4998         103 TNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAAL  182 (318)
Q Consensus       103 ~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~  182 (318)
                      .+++++|++.+++++..+..|.||||+|+..|+.+++++|++.|.+++..+..+.+|||+++..+..+++++|.+.+.++
T Consensus        83 ~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i  162 (223)
T d1uoha_          83 DEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST  162 (223)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             cchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhcccccee
Confidence            99999999999888888888999999999999999999999999999888889999999999999999999999999999


Q ss_pred             cCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHh
Q psy4998         183 YSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG  243 (318)
Q Consensus       183 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  243 (318)
                      +..+..|+||||.|+..++.+++++|+++|++++.+|..|+||||+| ..|+.+++++|++
T Consensus       163 ~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         163 NIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             eeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            99999999999999999999999999999999999999999999988 4688889999875

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-37  Score=249.17  Aligned_cols=256  Identities=28%  Similarity=0.341  Sum_probs=230.1

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCC-----CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCC
Q psy4998          28 GFTPLAVAMQQGHDRVVAVLLENDTK-----GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGN  102 (318)
Q Consensus        28 ~~t~l~~A~~~g~~~~~~~ll~~~~~-----~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~  102 (318)
                      +.|+|+.|++.|+.++|++|++.|++     +..|.||||+|+..|+.+++++|++.+..+...+..+.+|.+.++..+.
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGS   84 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCC
Confidence            45899999999999999999999765     3457899999999999999999999999999888899999999999999


Q ss_pred             HHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCcc----------CCCCChHHHHHHHcCCHHHH
Q psy4998         103 TNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAK----------TRDGLTPLHCAARSGHDNVI  172 (318)
Q Consensus       103 ~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~  172 (318)
                      .+...+.++...+....+..+.++++.|+..++...+..++....+++..          ...|.||||+|+..|+.+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  164 (285)
T d1wdya_          85 VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL  164 (285)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHH
T ss_pred             ccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHH
Confidence            99999999998887777888999999999999999999999876665433          33588999999999999999


Q ss_pred             HHHHHc-CCCCcCCCCCCCcHhHHHhh----cCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhC-CC
Q psy4998         173 DILIEK-GAALYSKTKAGFTPLHIASH----FGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA-GA  246 (318)
Q Consensus       173 ~~ll~~-~~~~~~~~~~~~t~l~~a~~----~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-g~  246 (318)
                      ++|+++ |++++..+..+.+++..+..    .+..+++++|+++|++++.++..|.||||+|+..|+.+++++|+++ |+
T Consensus       165 ~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~  244 (285)
T d1wdya_         165 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI  244 (285)
T ss_dssp             HHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSC
T ss_pred             HHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCC
Confidence            999975 78999999988888766543    3446799999999999999999999999999999999999999985 99


Q ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcccccee
Q psy4998         247 QPNATTNHGQTALNIAQKLGYISVIETLKIVTETTIV  283 (318)
Q Consensus       247 ~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~  283 (318)
                      +++.+|..|.||||+|+++|+.++|++|..++++...
T Consensus       245 din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~  281 (285)
T d1wdya_         245 EINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc
Confidence            9999999999999999999999999999999887543

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.4e-38  Score=250.39  Aligned_cols=228  Identities=26%  Similarity=0.263  Sum_probs=185.6

Q ss_pred             CCCCChhHHHHHHhCCCHHHHHHHHhCCCC---CCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHH
Q psy4998          53 KGKVKLPALHIAAKKDDCKAAALLLENDHS---PDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHV  129 (318)
Q Consensus        53 ~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~---~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~  129 (318)
                      -+..|.||||+|+..|+.+++++|+++|++   ++..+..|.||||+|+..|+.+++++|++.|++++..+..|.+||++
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~   84 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL   84 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhh
Confidence            356789999999999999999999999877   45667889999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHHHHcCCCCCccCC----------CCChHHHHHHHcCC----HHHHHHHHHcCCCCcCCCCCCCcHhHH
Q psy4998         130 ACKWGKVAMVELLISKGANIEAKTR----------DGLTPLHCAARSGH----DNVIDILIEKGAALYSKTKAGFTPLHI  195 (318)
Q Consensus       130 a~~~~~~~~~~~L~~~~~~~~~~~~----------~~~~~l~~a~~~~~----~~~~~~ll~~~~~~~~~~~~~~t~l~~  195 (318)
                      |+..++.+++++|++.+........          ..............    ..........+..++.++..|.||||+
T Consensus        85 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~  164 (255)
T d1oy3d_          85 ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV  164 (255)
T ss_dssp             HTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHH
T ss_pred             hhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccc
Confidence            9999999999999987543221111          00011111111111    111111122345567788999999999


Q ss_pred             HhhcCCHHHHHHHHHcCCCCCcC-CCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHh
Q psy4998         196 ASHFGQLNMVRYLVENGANVNAT-TNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETL  274 (318)
Q Consensus       196 a~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  274 (318)
                      |+..++.+++++|++++++++.. +..|.||||+|++.|+.+++++|+++|++++.+|..|+|||++|+..++.+++++|
T Consensus       165 A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~L  244 (255)
T d1oy3d_         165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL  244 (255)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHH
T ss_pred             cccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence            99999999999999999998865 56799999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccc
Q psy4998         275 KIVTET  280 (318)
Q Consensus       275 ~~~~~~  280 (318)
                      .++++.
T Consensus       245 l~~Ga~  250 (255)
T d1oy3d_         245 RAHGAP  250 (255)
T ss_dssp             HHTTCC
T ss_pred             HHcCCC
Confidence            999875

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=3e-38  Score=254.38  Aligned_cols=250  Identities=22%  Similarity=0.280  Sum_probs=204.2

Q ss_pred             cChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCChhHHHHHHhCCCHHHHHHHHhCCCCCC
Q psy4998           5 ENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPD   84 (318)
Q Consensus         5 ~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~   84 (318)
                      .|..++++.|.+.+++.... .+|.||||+||..|+.+++++|+.                     ...+.++++|++++
T Consensus        11 ~~~~~~~~~l~~~~~n~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~---------------------~~~~~~l~~Gadvn   68 (277)
T d2fo1e1          11 AGSYAITEPITRESVNIIDP-RHNRTVLHWIASNSSAEKSEDLIV---------------------HEAKECIAAGADVN   68 (277)
T ss_dssp             HSSSCCCSCCSTTTTTTCCC-SSCCCHHHHHHCTTCCSCCTTHHH---------------------HHHHHHHHTCCCTT
T ss_pred             CCCHHHHHHHHhcCCCcCCC-CCCccHHHHHHHcCCHHHHHHHHh---------------------cchhHHHHcCCCcc
Confidence            35555555565665554332 246677777777777777776664                     33456678899999


Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcC---CCCCccCCCCChHHH
Q psy4998          85 VKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKG---ANIEAKTRDGLTPLH  161 (318)
Q Consensus        85 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~---~~~~~~~~~~~~~l~  161 (318)
                      ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||++.|+..++.+++.++...+   ..++..+....++.+
T Consensus        69 ~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  148 (277)
T d2fo1e1          69 AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALM  148 (277)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHH
T ss_pred             ccCCCCCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHH
Confidence            99999999999999999999999999999999999999999999999999999999887763   345566777888888


Q ss_pred             HHHHcCCH---HHHHHHHHcCCC--------CcCCCCCCCcHhHHHhhcCCHHHHHHHH-HcCCCCCcCCCCCCCHHHHH
Q psy4998         162 CAARSGHD---NVIDILIEKGAA--------LYSKTKAGFTPLHIASHFGQLNMVRYLV-ENGANVNATTNLGYTPLHQA  229 (318)
Q Consensus       162 ~a~~~~~~---~~~~~ll~~~~~--------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~l~~A  229 (318)
                      .+...+..   ..+..+.+....        .+..+..|.||||.++..++.+++++++ ..+.+++.++..|.||||+|
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A  228 (277)
T d2fo1e1         149 IVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLA  228 (277)
T ss_dssp             HHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHH
T ss_pred             HHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHH
Confidence            88887754   344444444322        2345567999999999999999998765 57899999999999999999


Q ss_pred             HHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhh
Q psy4998         230 SQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKI  276 (318)
Q Consensus       230 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~  276 (318)
                      +..|+.+++++|+++|+|++.+|..|.|||++|++.|+.++|++|.+
T Consensus       229 ~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         229 AQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999864

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=1.8e-37  Score=251.60  Aligned_cols=263  Identities=25%  Similarity=0.309  Sum_probs=195.7

Q ss_pred             ccChHHHHHHHHhcCCCCCcC---------CCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCH
Q psy4998           4 QENHDGVVRYLLSKGGNQTLA---------TEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDC   70 (318)
Q Consensus         4 ~~g~~~~v~~Ll~~g~~~~~~---------~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~   70 (318)
                      +..+.+-++.+.....+....         +.++.|+|+.||..|++++|++|++.|++    +..|.||||+|+..|+.
T Consensus         7 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~   86 (291)
T d1s70b_           7 KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNV   86 (291)
T ss_dssp             HHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCH
T ss_pred             hHhhHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCc
Confidence            344556666666554433321         11234778888888888888888887654    55677888888888888


Q ss_pred             HHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHc-CCCC
Q psy4998          71 KAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISK-GANI  149 (318)
Q Consensus        71 ~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~-~~~~  149 (318)
                      +++++|++++.+....+..+.+||+.++..++.+++++|++++...+..+..+.+++++|+..+..+.++.++.. +.+.
T Consensus        87 eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~  166 (291)
T d1s70b_          87 DMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI  166 (291)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCH
T ss_pred             eeeeeecccccccccccccccccccccccccccchhhcccccCcccccccccCccccccccccccchhcccccccccccc
Confidence            888888888887777777778888888888888888888888877777777788888888888888877777754 2221


Q ss_pred             CccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Q psy4998         150 EAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQA  229 (318)
Q Consensus       150 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A  229 (318)
                      ...       ...............+..........+..|.||||.|+..++.+++++|+++|++++.++..|.||||+|
T Consensus       167 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A  239 (291)
T d1s70b_         167 EAA-------RKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAA  239 (291)
T ss_dssp             HHH-------HHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHH
T ss_pred             ccc-------cccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHH
Confidence            110       0011111112233334444555566778899999999999999999999999999999999999999999


Q ss_pred             HHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhc
Q psy4998         230 SQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIV  277 (318)
Q Consensus       230 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  277 (318)
                      +..|+.+++++|+++|+|++.+|..|+|||++|++    +++++|...
T Consensus       240 ~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e----~~~~~L~~~  283 (291)
T d1s70b_         240 AHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE----DILGYLEEL  283 (291)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS----GGGHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH----HHHHHHHHH
Confidence            99999999999999999999999999999999975    455555544

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-36  Score=237.96  Aligned_cols=218  Identities=28%  Similarity=0.355  Sum_probs=157.4

Q ss_pred             hHHHHHHhCCCHHHHHHHHh-CCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCccc---ccCCCChHHHHHHHcC
Q psy4998          59 PALHIAAKKDDCKAAALLLE-NDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNN---QAKHNITPLHVACKWG  134 (318)
Q Consensus        59 ~~l~~A~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~---~~~~~~~~l~~a~~~~  134 (318)
                      +|||+|+..|+.+++++|++ .+..++..+..|.||||+|+..|+.+++++|+++|++++.   .+..|.+++++++..+
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG   81 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccc
Confidence            56666666666666666655 3445666677777777777777777777777777776543   3445677777777777


Q ss_pred             cHHHHHHHHHcCCC--CCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcC
Q psy4998         135 KVAMVELLISKGAN--IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENG  212 (318)
Q Consensus       135 ~~~~~~~L~~~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g  212 (318)
                      ..++++.++..+..  ....+..+.++++.++..++.+++++|+..+...+..+..|+||+|+|+..++.+++++|++.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  161 (229)
T d1ixva_          82 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG  161 (229)
T ss_dssp             CHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccc
Confidence            77777777766543  3334556677778877777888888888777777777777788888888888888888887775


Q ss_pred             -CCCCcCCCCCCCHHHHHHHcCCHhHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccc
Q psy4998         213 -ANVNATTNLGYTPLHQASQQGRVLIIDLLLG-AGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTE  279 (318)
Q Consensus       213 -~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  279 (318)
                       .+++.++..|.||||+|+..|+.+++++|++ .|+|++.+|..|+|||++|+   +.+++++|.+.+.
T Consensus       162 ~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~---~~~~~~~Ll~~g~  227 (229)
T d1ixva_         162 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVV  227 (229)
T ss_dssp             CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS---CHHHHHHHHHHCC
T ss_pred             cccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh---hHHHHHHHHHcCC
Confidence             5677777778888888888888888888776 47888888888888888876   3467777766554

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-36  Score=236.32  Aligned_cols=216  Identities=25%  Similarity=0.305  Sum_probs=196.3

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhcC-----CCCCCChhHHHHHHhCCCHHHHHHHHhCCCCCCC---CCCCCchHHHHHHHc
Q psy4998          29 FTPLAVAMQQGHDRVVAVLLEND-----TKGKVKLPALHIAAKKDDCKAAALLLENDHSPDV---KSNSHFTPLHIAAHY  100 (318)
Q Consensus        29 ~t~l~~A~~~g~~~~~~~ll~~~-----~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~---~~~~~~~~l~~a~~~  100 (318)
                      .+|||+||.+|+.++++.|++..     ..+..|.||||+|+..|+.+++++|+++|++++.   .+..|.+|+++++..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            37999999999999999998863     3477899999999999999999999999998764   566789999999999


Q ss_pred             CCHHHHHHHHhccCCccc--ccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHc
Q psy4998         101 GNTNIAELLIQKHANVNN--QAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEK  178 (318)
Q Consensus       101 ~~~~~~~~ll~~~~~~~~--~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  178 (318)
                      +..++++.++..+.....  .+..+.++++.++..++.++++.|+..+......+..|+|+||.|+..|+.+++++|++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  160 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL  160 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccc
Confidence            999999999988775443  456788999999999999999999999999999999999999999999999999999998


Q ss_pred             C-CCCcCCCCCCCcHhHHHhhcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCC
Q psy4998         179 G-AALYSKTKAGFTPLHIASHFGQLNMVRYLVE-NGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ  247 (318)
Q Consensus       179 ~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  247 (318)
                      + .+++.++..|.||||+|+..++.+++++|++ .|++++.+|..|.||||+|+.   .+++++|+++|+|
T Consensus       161 ~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         161 GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             TCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             ccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            7 6778899999999999999999999999997 599999999999999999984   5899999999987

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=2.9e-36  Score=244.51  Aligned_cols=232  Identities=25%  Similarity=0.297  Sum_probs=199.0

Q ss_pred             ccccChHHHHHHHHhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCChhHHHHHHhCCCHHHHHHHH
Q psy4998           2 AAQENHDGVVRYLLSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTK----GKVKLPALHIAAKKDDCKAAALLL   77 (318)
Q Consensus         2 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~----~~~~~~~l~~A~~~~~~~~~~~ll   77 (318)
                      ||+.|+.++|++|+++|++++..|.+|.||||+|+.+|+.+++++|++.+..    ...+.++|+.|+..++.+++++|+
T Consensus        47 A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~  126 (291)
T d1s70b_          47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLI  126 (291)
T ss_dssp             HHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccchhhccc
Confidence            8999999999999999999999999999999999999999999999998655    445678999999999999999999


Q ss_pred             hCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccC-CcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCC
Q psy4998          78 ENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHA-NVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDG  156 (318)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~  156 (318)
                      ++|...+..+..+.+++++|+..+..+.++.++.... ......       ..............+..........+..+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  199 (291)
T d1s70b_         127 SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAAR-------KEEERIMLRDARQWLNSGHINDVRHAKSG  199 (291)
T ss_dssp             HTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHH-------HHHHHHHHHHHHHHHHHTCCCCCCCTTTC
T ss_pred             ccCcccccccccCccccccccccccchhcccccccccccccccc-------ccccccccccchhhhcccccccccccCCC
Confidence            9999999999999999999999999999999986543 221111       11111122334444555556666778889


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHh
Q psy4998         157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL  236 (318)
Q Consensus       157 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~  236 (318)
                      .|+|+.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|++    +
T Consensus       200 ~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e----~  275 (291)
T d1s70b_         200 GTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE----D  275 (291)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS----G
T ss_pred             CChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH----H
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999975    5


Q ss_pred             HHHHHHhC
Q psy4998         237 IIDLLLGA  244 (318)
Q Consensus       237 ~~~~Ll~~  244 (318)
                      ++++|.+.
T Consensus       276 ~~~~L~~~  283 (291)
T d1s70b_         276 ILGYLEEL  283 (291)
T ss_dssp             GGHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-34  Score=224.60  Aligned_cols=221  Identities=32%  Similarity=0.474  Sum_probs=191.8

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCCCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHH
Q psy4998          27 DGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIA  106 (318)
Q Consensus        27 ~~~t~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  106 (318)
                      +|.||||+||.+|+.+++++|++                         .+.+.|.+++..+..|.||||+|+..|+.+++
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~-------------------------~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv   56 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVN-------------------------LFQQGGRELDIYNNLRQTPLHLAVITTLPSVV   56 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHH-------------------------HHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHH-------------------------HHHHCCCCCCccCCCCCccceehhcccccccc
Confidence            56777777777777777776654                         45568889999999999999999999999999


Q ss_pred             HHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCC----CCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCC
Q psy4998         107 ELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGAN----IEAKTRDGLTPLHCAARSGHDNVIDILIEKGAAL  182 (318)
Q Consensus       107 ~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~----~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~  182 (318)
                      ++|++++++.+.....+.++++.|...++.++++.+......    .+.......++++.+...........+.....+.
T Consensus        57 ~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~  136 (228)
T d1k1aa_          57 RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI  136 (228)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             cccccccccccccccccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhcccccc
Confidence            999999999998888999999999999999998888775322    3344556778999999999999999998876654


Q ss_pred             c-CCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHH
Q psy4998         183 Y-SKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNI  261 (318)
Q Consensus       183 ~-~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~  261 (318)
                      . .....+.++++.|+..+...++++++++|.+++.++..|.||||+|+..|+.+++++|+++|+|++.+|..|.|||++
T Consensus       137 ~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~  216 (228)
T d1k1aa_         137 DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV  216 (228)
T ss_dssp             TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTT
T ss_pred             ccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            3 345678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHH
Q psy4998         262 AQKLGYISVIE  272 (318)
Q Consensus       262 A~~~~~~~~~~  272 (318)
                      |+++|+.++|+
T Consensus       217 A~~~~~~divk  227 (228)
T d1k1aa_         217 ARSRRVIDILR  227 (228)
T ss_dssp             CSSHHHHHHHT
T ss_pred             HHhCCCccccC
Confidence            99999888774

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=7e-34  Score=219.07  Aligned_cols=206  Identities=26%  Similarity=0.335  Sum_probs=188.9

Q ss_pred             HHHHHHHHhCCCCCCC-CCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCC-
Q psy4998          70 CKAAALLLENDHSPDV-KSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGA-  147 (318)
Q Consensus        70 ~~~~~~ll~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~-  147 (318)
                      .+++++|+++|++++. .|.+|.||||+||..|+.+++++|++.|+.++.++..+.++++.++..++............ 
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT   81 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            5899999999999887 58899999999999999999999999999999999999999999999998887777666533 


Q ss_pred             CCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHH
Q psy4998         148 NIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLH  227 (318)
Q Consensus       148 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~  227 (318)
                      ........+.+..+.+.........+.|...+.+++..+..|.||++.++..+..++++.+++.+.+++..|..|.||||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~  161 (209)
T d1ot8a_          82 NLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF  161 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccc
Confidence            33344556778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhh
Q psy4998         228 QASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLK  275 (318)
Q Consensus       228 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~  275 (318)
                      +|+..|+.+++++|+++|+|++.+|..|+||+++|++.|+.++|++|.
T Consensus       162 ~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL~  209 (209)
T d1ot8a_         162 LAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLD  209 (209)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred             hhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhcC
Confidence            999999999999999999999999999999999999999999999873

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-34  Score=222.67  Aligned_cols=191  Identities=28%  Similarity=0.310  Sum_probs=140.0

Q ss_pred             CchHHHHHHHcCCHH----HHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHH
Q psy4998          90 HFTPLHIAAHYGNTN----IAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAAR  165 (318)
Q Consensus        90 ~~~~l~~a~~~~~~~----~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~  165 (318)
                      |.||||+|+..|+.+    +++++...+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.+||+.++.
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~   81 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE   81 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccccccccccccccccccc
Confidence            556666666666543    3444445556666666666666666666666666666666666666666666666666666


Q ss_pred             cCCHHHHHHHHHcCCCC------cCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCC-CCCCCHHHHHHHcCCHhHH
Q psy4998         166 SGHDNVIDILIEKGAAL------YSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATT-NLGYTPLHQASQQGRVLII  238 (318)
Q Consensus       166 ~~~~~~~~~ll~~~~~~------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~l~~A~~~~~~~~~  238 (318)
                      .++.++++.+++.+...      ......|.||+|.|+..++.+++++|++.|..++..+ ..|.||||+|+..|+.+++
T Consensus        82 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v  161 (221)
T d1iknd_          82 QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV  161 (221)
T ss_dssp             HTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHH
Confidence            66666666666654432      2234457889999999999999999999988887765 4689999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcccc
Q psy4998         239 DLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTET  280 (318)
Q Consensus       239 ~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  280 (318)
                      ++|+++|+|++.+|..|.||+++|+..++.+++++|.+....
T Consensus       162 ~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         162 SLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             HHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             HHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            999999999999999999999999999999999999887554

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-34  Score=221.36  Aligned_cols=191  Identities=26%  Similarity=0.331  Sum_probs=159.0

Q ss_pred             ChhHHHHHHhCCCH----HHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHH
Q psy4998          57 KLPALHIAAKKDDC----KAAALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACK  132 (318)
Q Consensus        57 ~~~~l~~A~~~~~~----~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~  132 (318)
                      |.||||+|+..|+.    ++++++...+.+++..+..|.||||+|+..++.+++++|++.|++++..+..|.+|++.++.
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~   81 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE   81 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccccccccccccccccccc
Confidence            34445555554443    23345666778888889999999999999999999999999999999998999999999999


Q ss_pred             cCcHHHHHHHHHcCCCCC------ccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCC-CCCCcHhHHHhhcCCHHHH
Q psy4998         133 WGKVAMVELLISKGANIE------AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT-KAGFTPLHIASHFGQLNMV  205 (318)
Q Consensus       133 ~~~~~~~~~L~~~~~~~~------~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~  205 (318)
                      .++.++++.|++.+....      .....+.++++.|+..++.+.+++++..|..++..+ .+|.||||+|++.|+.+++
T Consensus        82 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v  161 (221)
T d1iknd_          82 QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV  161 (221)
T ss_dssp             HTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHH
Confidence            999999999998764432      334457899999999999999999999998887665 5799999999999999999


Q ss_pred             HHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCC
Q psy4998         206 RYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQ  247 (318)
Q Consensus       206 ~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  247 (318)
                      ++|+++|+|++.++..|.||||+|+..++.+++++|++.+.+
T Consensus       162 ~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         162 SLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             HHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             HHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            999999999999999999999999999999999999998655

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=2.5e-32  Score=210.31  Aligned_cols=205  Identities=27%  Similarity=0.355  Sum_probs=171.6

Q ss_pred             HHHHHHHHhcCCCCCc-CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCC
Q psy4998           8 DGVVRYLLSKGGNQTL-ATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALLLENDHSPDVK   86 (318)
Q Consensus         8 ~~~v~~Ll~~g~~~~~-~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~   86 (318)
                      .|+|++|+++|++++. .|.+|.||||+||..|+.+++++|++                             .|.+++..
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~-----------------------------~g~~~n~~   52 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLD-----------------------------AGADANSQ   52 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHH-----------------------------TTCCTTCC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHh-----------------------------hccccccc
Confidence            4789999999998876 47788888888877777666666555                             45556667


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhccCC-cccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHH
Q psy4998          87 SNSHFTPLHIAAHYGNTNIAELLIQKHAN-VNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAAR  165 (318)
Q Consensus        87 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~  165 (318)
                      +..+.++++.++..++............. .......+.++.+.+.........+.|...+.+++.++..+.|+++.++.
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~  132 (209)
T d1ot8a_          53 DNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAA  132 (209)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcc
Confidence            77788888888888887776666554432 22234456778888888888888999999999888889999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHH
Q psy4998         166 SGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL  241 (318)
Q Consensus       166 ~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  241 (318)
                      .+..++++.+++.+.+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|++.|+.+++++|
T Consensus       133 ~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         133 VNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999986

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.98  E-value=1.7e-31  Score=214.62  Aligned_cols=214  Identities=24%  Similarity=0.364  Sum_probs=161.2

Q ss_pred             CccccChHHHHHHH--------HhcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCChhHHHHHHhCCCHHH
Q psy4998           1 MAAQENHDGVVRYL--------LSKGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKA   72 (318)
Q Consensus         1 lA~~~g~~~~v~~L--------l~~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~   72 (318)
                      +||..|+.++|++|        ++.|++++.+|.+|.||||+|+..|+.+++++|+++|                     
T Consensus        39 ~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~G---------------------   97 (277)
T d2fo1e1          39 WIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAG---------------------   97 (277)
T ss_dssp             HHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT---------------------
T ss_pred             HHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccc---------------------
Confidence            48899999999776        5679999999999999999999988888877777654                     


Q ss_pred             HHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcc---CCcccccCCCChHHHHHHHcCcH---HHHHHHHHcC
Q psy4998          73 AALLLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKH---ANVNNQAKHNITPLHVACKWGKV---AMVELLISKG  146 (318)
Q Consensus        73 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~---~~~~~~~~~~~~~l~~a~~~~~~---~~~~~L~~~~  146 (318)
                              ++++..+..|.|||++|+..++.++++++....   ..++..+..+.++.+.+...+..   ..+..+....
T Consensus        98 --------ad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (277)
T d2fo1e1          98 --------ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKG  169 (277)
T ss_dssp             --------CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHT
T ss_pred             --------cccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccc
Confidence                    444555555666666666666666665554432   12333344455555555554432   2333333322


Q ss_pred             C--------CCCccCCCCChHHHHHHHcCCHHHHHHHH-HcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCc
Q psy4998         147 A--------NIEAKTRDGLTPLHCAARSGHDNVIDILI-EKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNA  217 (318)
Q Consensus       147 ~--------~~~~~~~~~~~~l~~a~~~~~~~~~~~ll-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~  217 (318)
                      .        ..+..+..+.|+|+.++..++.+++++++ ..+.+.+.++..|.||||+|+..|+.+++++|+++|++++.
T Consensus       170 ~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~  249 (277)
T d2fo1e1         170 AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA  249 (277)
T ss_dssp             CCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC
T ss_pred             ccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence            1        12345567889999999999999998755 56788888899999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHcCCHhHHHHHHh
Q psy4998         218 TTNLGYTPLHQASQQGRVLIIDLLLG  243 (318)
Q Consensus       218 ~~~~g~t~l~~A~~~~~~~~~~~Ll~  243 (318)
                      +|..|.||||+|++.|+.+++++|++
T Consensus       250 ~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         250 VDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             CCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999985

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.9e-29  Score=184.82  Aligned_cols=153  Identities=32%  Similarity=0.436  Sum_probs=73.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHH
Q psy4998          92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNV  171 (318)
Q Consensus        92 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  171 (318)
                      ++||+|+..|+.+++++|+++|++++..+..|.||||+|+ .++.+++++|++.+++++..+..+.++++.++..+..+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            3444444444444444444444444444444444444332 344444444444444444444444444444444444444


Q ss_pred             HHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCC-CCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCC
Q psy4998         172 IDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGA-NVNATTNLGYTPLHQASQQGRVLIIDLLLGAG  245 (318)
Q Consensus       172 ~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g  245 (318)
                      ++.+++.+.+++..+..|.+|+++|+..++.+++++|+++|+ +++.++..|.||||+|++.++.+++++|+++|
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            444444444444444445555555555555555555554443 44444555555555555555555555555444

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.4e-29  Score=193.87  Aligned_cols=210  Identities=26%  Similarity=0.341  Sum_probs=152.4

Q ss_pred             CccccChHHHHHHHHh----cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCChhHHHHHHhCCCHHHHHHH
Q psy4998           1 MAAQENHDGVVRYLLS----KGGNQTLATEDGFTPLAVAMQQGHDRVVAVLLENDTKGKVKLPALHIAAKKDDCKAAALL   76 (318)
Q Consensus         1 lA~~~g~~~~v~~Ll~----~g~~~~~~~~~~~t~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~l   76 (318)
                      +||+.|+.++|++|++    .|++++..|..|.||||+|+..|+.+++++|++.+.                        
T Consensus         9 ~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga------------------------   64 (228)
T d1k1aa_           9 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA------------------------   64 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------------------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccc------------------------
Confidence            4899999999999885    799999999999999999999888888777766543                        


Q ss_pred             HhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCC----cccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCC-c
Q psy4998          77 LENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHAN----VNNQAKHNITPLHVACKWGKVAMVELLISKGANIE-A  151 (318)
Q Consensus        77 l~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~----~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~-~  151 (318)
                           +.+.....+.++++.|...++.++++.+......    .+.......++++.+...........|.....+.. .
T Consensus        65 -----~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~  139 (228)
T d1k1aa_          65 -----SPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV  139 (228)
T ss_dssp             -----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             -----cccccccccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccc
Confidence                 3344445555666666666666666555443221    12223345567777777777777777766654432 3


Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Q psy4998         152 KTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQ  231 (318)
Q Consensus       152 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~  231 (318)
                      ....+.++++.|+..+...+++++++.+...+.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|++
T Consensus       140 ~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~  219 (228)
T d1k1aa_         140 DIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS  219 (228)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSS
T ss_pred             cccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Confidence            44466778888888888888888888887777777788888888888888888888888888888888888888888888


Q ss_pred             cCCHhHHH
Q psy4998         232 QGRVLIID  239 (318)
Q Consensus       232 ~~~~~~~~  239 (318)
                      +|+.+++|
T Consensus       220 ~~~~divk  227 (228)
T d1k1aa_         220 RRVIDILR  227 (228)
T ss_dssp             HHHHHHHT
T ss_pred             CCCccccC
Confidence            77777764

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.1e-28  Score=180.06  Aligned_cols=150  Identities=32%  Similarity=0.472  Sum_probs=126.3

Q ss_pred             hHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHH
Q psy4998         125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNM  204 (318)
Q Consensus       125 ~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  204 (318)
                      |||+.|+..|+.+++++|+++|++++ .+..|.||||+|+..++.+++..++............+.++++.++...+.++
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANI   82 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCcccccccccccccccccccccccccccccccccccccccccccccee
Confidence            67777777777777777777777665 56777888888888888888888877776666667777788888888888889


Q ss_pred             HHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhh
Q psy4998         205 VRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLK  275 (318)
Q Consensus       205 ~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~  275 (318)
                      +++++++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.|++++|+
T Consensus        83 ~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL~  153 (153)
T d1awcb_          83 VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ  153 (153)
T ss_dssp             HHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred             eecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhCc
Confidence            99888888888888888999999999999999999999999999999999999999999999999998874

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.96  E-value=3.6e-32  Score=224.50  Aligned_cols=223  Identities=16%  Similarity=0.133  Sum_probs=144.6

Q ss_pred             CCChhHHHHHHhCCCHHHHHH---HHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhccCCccccc--CCCChHHHH
Q psy4998          55 KVKLPALHIAAKKDDCKAAAL---LLENDHSPDVKSNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQA--KHNITPLHV  129 (318)
Q Consensus        55 ~~~~~~l~~A~~~~~~~~~~~---ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~--~~~~~~l~~  129 (318)
                      ..+.|+|++|+.+|+.+++++   |++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+  ..|.||||+
T Consensus        88 ~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~  167 (346)
T d2ajaa1          88 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRL  167 (346)
T ss_dssp             CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHH
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHH
Confidence            345677777888877766554   577777777777778888888888888888888888887776554  247788888


Q ss_pred             HHHcCcHHHHHHHHHcCCCCC---ccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCC-------CCCCcHhHHHhhc
Q psy4998         130 ACKWGKVAMVELLISKGANIE---AKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKT-------KAGFTPLHIASHF  199 (318)
Q Consensus       130 a~~~~~~~~~~~L~~~~~~~~---~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-------~~~~t~l~~a~~~  199 (318)
                      |+..|+.+++++|++.|....   ..+..+.++++.|+.+|+.+++++|++.|++++..+       ..+.++++.+...
T Consensus       168 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (346)
T d2ajaa1         168 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVN  247 (346)
T ss_dssp             HHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhc
Confidence            888888888888887765442   223345567777777888888888887765543211       1122333333333


Q ss_pred             CCHHHHHHHHHcCCC--CCcCCC-------CCCCHHHHHHHcCCHhHHHHHHhCCCC-----CCCCCCCCCCHHHHHHHc
Q psy4998         200 GQLNMVRYLVENGAN--VNATTN-------LGYTPLHQASQQGRVLIIDLLLGAGAQ-----PNATTNHGQTALNIAQKL  265 (318)
Q Consensus       200 ~~~~~~~~Ll~~g~~--~~~~~~-------~g~t~l~~A~~~~~~~~~~~Ll~~g~~-----~~~~~~~g~t~l~~A~~~  265 (318)
                      +..+....+.....+  .+..+.       .+.++++.|+..+..+++++|++.+..     ....+..|.||||+|++.
T Consensus       248 ~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~  327 (346)
T d2ajaa1         248 RLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRL  327 (346)
T ss_dssp             HHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHH
T ss_pred             cchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHc
Confidence            222222222211111  111111       123678888888999999999988653     334456788999999999


Q ss_pred             CCHHHHHHhhhc
Q psy4998         266 GYISVIETLKIV  277 (318)
Q Consensus       266 ~~~~~~~~l~~~  277 (318)
                      |+.++|++|...
T Consensus       328 Gn~e~v~lLL~~  339 (346)
T d2ajaa1         328 GNQGACALLLSI  339 (346)
T ss_dssp             TCTTHHHHHTTS
T ss_pred             CcHHHHHHHhCC
Confidence            999999999765

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-28  Score=180.35  Aligned_cols=151  Identities=28%  Similarity=0.388  Sum_probs=127.5

Q ss_pred             hHHHHHHHcCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHH
Q psy4998         125 TPLHVACKWGKVAMVELLISK-GANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLN  203 (318)
Q Consensus       125 ~~l~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  203 (318)
                      ..|+.|+..|+.++++.|++. +.+++..+..|.||||+|+ .++.+++++|++++.+++..+..|.+|++.++..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            457888888888888888765 6778888888888888776 47778888888888888888888888888888888888


Q ss_pred             HHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhc
Q psy4998         204 MVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIV  277 (318)
Q Consensus       204 ~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  277 (318)
                      ++++++++|++++.++..|.||||+|+..|+.+++++|+ .|++++.+|..|+||+++|+++|+.+++++|+++
T Consensus        83 ~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            888888888888888888899999999999999988776 6788888888899999999999999999888765

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.8e-29  Score=181.80  Aligned_cols=153  Identities=26%  Similarity=0.394  Sum_probs=147.0

Q ss_pred             hHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHH
Q psy4998         125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNM  204 (318)
Q Consensus       125 ~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  204 (318)
                      ++||.|+..|+.+++++|++.|++++.++..|.||||+|+ .++.+++++|++.+++++..+..+.++++.++..+..+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            7999999999999999999999999999999999999886 789999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHhhhcc
Q psy4998         205 VRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGA-QPNATTNHGQTALNIAQKLGYISVIETLKIVT  278 (318)
Q Consensus       205 ~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~  278 (318)
                      +++|++.+.+++..+..|.+|+++|+..++.+++++|+++|. +++.+|..|+||+|+|++.++.+++++|.+.+
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999976 78999999999999999999999999998753

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.8e-28  Score=178.28  Aligned_cols=151  Identities=27%  Similarity=0.446  Sum_probs=113.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHhc-cCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHH
Q psy4998          92 TPLHIAAHYGNTNIAELLIQK-HANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDN  170 (318)
Q Consensus        92 ~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~  170 (318)
                      ..|+.|+..|+.++++.|++. +.+++..+..|.||||+|+ .++.+++++|++.+.+++..+..+.+|++.++..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            356777777777777776654 5566666667777777665 36667777777777777777777777777777777777


Q ss_pred             HHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhC
Q psy4998         171 VIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGA  244 (318)
Q Consensus       171 ~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  244 (318)
                      +++++++++++++.++..|.||||+|+..|+.+++++|+ .|++++.++..|.||||+|++.|+.+++++|+++
T Consensus        83 ~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            777777777777777777888888888888888887776 5778888888888888888888888888888765

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1e-27  Score=174.85  Aligned_cols=149  Identities=28%  Similarity=0.470  Sum_probs=127.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHH
Q psy4998          92 TPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNV  171 (318)
Q Consensus        92 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  171 (318)
                      |||+.|++.|+.+++++|+++|++++ .+..|.||||+|+..++.+++..++............+.++++.++.....+.
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANI   82 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCcccccccccccccccccccccccccccccccccccccccccccccee
Confidence            78888888888888888888887765 56678888888888888888888887776666667777788888888888888


Q ss_pred             HHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHH
Q psy4998         172 IDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLL  241 (318)
Q Consensus       172 ~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  241 (318)
                      ++++.+++.+.+.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+.+++++|
T Consensus        83 ~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          83 VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            8888888888888888999999999999999999999999999999999999999999999999999876

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=2.3e-30  Score=213.65  Aligned_cols=242  Identities=15%  Similarity=0.089  Sum_probs=175.5

Q ss_pred             cccChHHHHHHHHhcCCCCC-----------cCCCCCCCHHHHHHHcCCHHHHHH---HHhcCCC----CCCChhHHHHH
Q psy4998           3 AQENHDGVVRYLLSKGGNQT-----------LATEDGFTPLAVAMQQGHDRVVAV---LLENDTK----GKVKLPALHIA   64 (318)
Q Consensus         3 ~~~g~~~~v~~Ll~~g~~~~-----------~~~~~~~t~l~~A~~~g~~~~~~~---ll~~~~~----~~~~~~~l~~A   64 (318)
                      ...+..++.+.+...+++..           .++..|.|||++|+.+|+.+++++   |++.++.    +..|.||||+|
T Consensus        54 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~A  133 (346)
T d2ajaa1          54 GTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA  133 (346)
T ss_dssp             CSSHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHcchhhccchhhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHH
Confidence            34555677777766654433           345578899999999999988776   5666543    55678999999


Q ss_pred             HhCCCHHHHHHHHhCCCCCCCCC--CCCchHHHHHHHcCCHHHHHHHHhccCCcc---cccCCCChHHHHHHHcCcHHHH
Q psy4998          65 AKKDDCKAAALLLENDHSPDVKS--NSHFTPLHIAAHYGNTNIAELLIQKHANVN---NQAKHNITPLHVACKWGKVAMV  139 (318)
Q Consensus        65 ~~~~~~~~~~~ll~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~---~~~~~~~~~l~~a~~~~~~~~~  139 (318)
                      +..|+.+++++|++.|++++..+  ..|.||||+|+..|+.+++++|++.++...   ..+..+.+|++.|+.+|+.+++
T Consensus       134 a~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv  213 (346)
T d2ajaa1         134 AENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI  213 (346)
T ss_dssp             HHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHH
T ss_pred             HHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHH
Confidence            99999999999999999887754  458999999999999999999999987643   2334566788889999999999


Q ss_pred             HHHHHcCCCCCccC-------CCCChHHHHHHHcCCHHHHHHHHHcCCC--CcCCCC-------CCCcHhHHHhhcCCHH
Q psy4998         140 ELLISKGANIEAKT-------RDGLTPLHCAARSGHDNVIDILIEKGAA--LYSKTK-------AGFTPLHIASHFGQLN  203 (318)
Q Consensus       140 ~~L~~~~~~~~~~~-------~~~~~~l~~a~~~~~~~~~~~ll~~~~~--~~~~~~-------~~~t~l~~a~~~~~~~  203 (318)
                      ++|++.|++++..+       ....+++..+...+..+....+.....+  .+..+.       .+.++++.++..+..+
T Consensus       214 ~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld  293 (346)
T d2ajaa1         214 NFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLD  293 (346)
T ss_dssp             HHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHH
T ss_pred             HHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHH
Confidence            99999876554221       1222444444444333333222221111  111111       1346788899999999


Q ss_pred             HHHHHHHcCCC-----CCcCCCCCCCHHHHHHHcCCHhHHHHHHhC
Q psy4998         204 MVRYLVENGAN-----VNATTNLGYTPLHQASQQGRVLIIDLLLGA  244 (318)
Q Consensus       204 ~~~~Ll~~g~~-----~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  244 (318)
                      ++++|++.+..     .+..+.+|.||||+|++.|+.+++++||+.
T Consensus       294 ~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         294 DIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             HHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            99999988654     334456789999999999999999999875

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3e-27  Score=165.50  Aligned_cols=121  Identities=24%  Similarity=0.360  Sum_probs=112.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCC-CHHHHHHHcCC
Q psy4998         156 GLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGY-TPLHQASQQGR  234 (318)
Q Consensus       156 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~  234 (318)
                      +.++||.|+..|+.+++++|+++|++++.++..|.||+|.|+ .|+.+++++|+++|++++..+..+. ||||+|++.|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            457899999999999999999999999999999999998665 6899999999999999999988765 69999999999


Q ss_pred             HhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhc
Q psy4998         235 VLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIV  277 (318)
Q Consensus       235 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  277 (318)
                      .+++++|+++|++++.+|..|+||+++|++.|+.+++++|++.
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Llsa  124 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA  124 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             ccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=2.6e-27  Score=163.94  Aligned_cols=107  Identities=30%  Similarity=0.455  Sum_probs=102.0

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHh
Q psy4998         157 LTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVL  236 (318)
Q Consensus       157 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~  236 (318)
                      .|||++|+..|+.+++++|+++|++++.++..|.||+|+|+..++.+++++|+++|++++.++..|.||||+|+..|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHH
Q psy4998         237 IIDLLLGAGAQPNATTNHGQTALNIAQ  263 (318)
Q Consensus       237 ~~~~Ll~~g~~~~~~~~~g~t~l~~A~  263 (318)
                      ++++|+++|+|++.+|..|.||+++|.
T Consensus        83 ~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             hhhhhhcccccceeeCCCCCCHHHHHh
Confidence            999999999999999999999999883

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.6e-26  Score=158.60  Aligned_cols=120  Identities=26%  Similarity=0.344  Sum_probs=99.4

Q ss_pred             CChHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCC-cHhHHHhhcCC
Q psy4998         123 NITPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGF-TPLHIASHFGQ  201 (318)
Q Consensus       123 ~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~-t~l~~a~~~~~  201 (318)
                      +.++||.|+..|+.+++++|+++|++++.++..|.|+++.|+ .|+.+++++|+++|++++..+..+. +|||.|+..|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            346788888888888888888888888888888888887664 6788888888888888887777665 58899999999


Q ss_pred             HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHh
Q psy4998         202 LNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLG  243 (318)
Q Consensus       202 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  243 (318)
                      .+++++|+++|++++.+|..|.||||+|+++|+.+++++|++
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999888889999999999999999988865

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=9.1e-26  Score=158.93  Aligned_cols=120  Identities=30%  Similarity=0.347  Sum_probs=101.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhH
Q psy4998         158 TPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLI  237 (318)
Q Consensus       158 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  237 (318)
                      +.|+.|+..|+.+++++|+++|++++.++..|+||||+|+..++.+++++|++.|++++.+|.+|.||||+|+..|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            57888888888888888888888888888888889999988888899999988888888888888999999999999999


Q ss_pred             HHHHHhCCCCCCCCCC-CCCCHHHHH--HHcCCHHHHHHhhhc
Q psy4998         238 IDLLLGAGAQPNATTN-HGQTALNIA--QKLGYISVIETLKIV  277 (318)
Q Consensus       238 ~~~Ll~~g~~~~~~~~-~g~t~l~~A--~~~~~~~~~~~l~~~  277 (318)
                      +++|+++|++++..+. .++||++++  .+.|+.+++++|...
T Consensus        83 v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          83 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            9999999988887654 477877665  566788888888654

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.7e-26  Score=185.86  Aligned_cols=180  Identities=19%  Similarity=0.211  Sum_probs=125.2

Q ss_pred             CCCCCCCC-CCCCchHHHHHHHcCCHHHHHHHHhccCCcccccCCCChHHHHHHHcCc-------HHHHHHHHHcCCCCC
Q psy4998          79 NDHSPDVK-SNSHFTPLHIAAHYGNTNIAELLIQKHANVNNQAKHNITPLHVACKWGK-------VAMVELLISKGANIE  150 (318)
Q Consensus        79 ~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~-------~~~~~~L~~~~~~~~  150 (318)
                      .+.+++.. |..|.||||+|+..|+.+++++|++.|++++.++..|.||||.|+..++       .++++++..   ...
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~~  171 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CLI  171 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GGG
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hhh
Confidence            45566654 7889999999999999999999999999999999999999999998665       234444433   455


Q ss_pred             ccCCCCChHHHHHHHcCC----HH--------HHHHHHHcCCCC-cCCCCCCCcHhHHHhhcCCHHHH-----HHHHHcC
Q psy4998         151 AKTRDGLTPLHCAARSGH----DN--------VIDILIEKGAAL-YSKTKAGFTPLHIASHFGQLNMV-----RYLVENG  212 (318)
Q Consensus       151 ~~~~~~~~~l~~a~~~~~----~~--------~~~~ll~~~~~~-~~~~~~~~t~l~~a~~~~~~~~~-----~~Ll~~g  212 (318)
                      .++..|+|+||.++..+.    ..        ++.++...+... ......+.++++.+........+     .+++.. 
T Consensus       172 ~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  250 (301)
T d1sw6a_         172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN-  250 (301)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH-
T ss_pred             hcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhc-
Confidence            677888999998775543    22        334555544332 22233344444444333322222     223332 


Q ss_pred             CCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q psy4998         213 ANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQ  263 (318)
Q Consensus       213 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~  263 (318)
                       .+|.+|..|.||||+|++.|+.+++++|+++|+|++.+|+.|.||+++|+
T Consensus       251 -~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         251 -MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             -TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             -CccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence             36888999999999999999999999999999999999999999999985

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=3.6e-24  Score=154.48  Aligned_cols=124  Identities=26%  Similarity=0.286  Sum_probs=104.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcCC------CCCCCcHhHHHhhc---CCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Q psy4998         159 PLHCAARSGHDNVIDILIEKGAALYSK------TKAGFTPLHIASHF---GQLNMVRYLVENGANVNATTNLGYTPLHQA  229 (318)
Q Consensus       159 ~l~~a~~~~~~~~~~~ll~~~~~~~~~------~~~~~t~l~~a~~~---~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A  229 (318)
                      .|..|++.++...+..++..|.+++..      +..|+||||+|+..   +..+++++|+++|++++.++..|.||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            345667777777777777777665433      56688999999964   678999999999999999999999999999


Q ss_pred             HHcCCHhHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHhhhccccce
Q psy4998         230 SQQGRVLIIDLLLGAGAQPNATTNHGQTALNIAQKLGYISVIETLKIVTETTI  282 (318)
Q Consensus       230 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~  282 (318)
                      +..|+.+++++|+++|++++.+|..|+||+++|++.|+.+++++|.+......
T Consensus        89 ~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~  141 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF  141 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             cccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence            99999999999999999999999999999999999999999999988765543

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=3.9e-26  Score=158.01  Aligned_cols=105  Identities=29%  Similarity=0.418  Sum_probs=85.1

Q ss_pred             hHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHH
Q psy4998         125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNM  204 (318)
Q Consensus       125 ~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  204 (318)
                      |||++|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|++.|++++.++..|+||||+|+..++.++
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~   83 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC   83 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchhh
Confidence            67777777778888887777777777777777888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCCCCcCCCCCCCHHHHH
Q psy4998         205 VRYLVENGANVNATTNLGYTPLHQA  229 (318)
Q Consensus       205 ~~~Ll~~g~~~~~~~~~g~t~l~~A  229 (318)
                      +++|+++|++++.+|..|.||||+|
T Consensus        84 v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          84 VKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhcccccceeeCCCCCCHHHHH
Confidence            8888888888888888888888776

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3e-24  Score=151.04  Aligned_cols=120  Identities=26%  Similarity=0.401  Sum_probs=100.4

Q ss_pred             hHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHhHHHhhcCCHHH
Q psy4998         125 TPLHVACKWGKVAMVELLISKGANIEAKTRDGLTPLHCAARSGHDNVIDILIEKGAALYSKTKAGFTPLHIASHFGQLNM  204 (318)
Q Consensus       125 ~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  204 (318)
                      ++|+.|+..|+.+++++|++.|.+++.++..|.||||+|+..++.+++++|++.|++++..+.+|+||||+|+..|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            56788888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCCCCcCCC-CCCCHHHHH--HHcCCHhHHHHHHhC
Q psy4998         205 VRYLVENGANVNATTN-LGYTPLHQA--SQQGRVLIIDLLLGA  244 (318)
Q Consensus       205 ~~~Ll~~g~~~~~~~~-~g~t~l~~A--~~~~~~~~~~~Ll~~  244 (318)
                      +++|+++|++++..+. .+.||++++  .+.|+.+++++|++.
T Consensus        83 v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          83 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            8888888888887664 577887765  566788888888764

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=8.9e-23  Score=147.08  Aligned_cols=122  Identities=24%  Similarity=0.263  Sum_probs=101.9

Q ss_pred             HHHHHHcCcHHHHHHHHHcCCCCCcc------CCCCChHHHHHHHc---CCHHHHHHHHHcCCCCcCCCCCCCcHhHHHh
Q psy4998         127 LHVACKWGKVAMVELLISKGANIEAK------TRDGLTPLHCAARS---GHDNVIDILIEKGAALYSKTKAGFTPLHIAS  197 (318)
Q Consensus       127 l~~a~~~~~~~~~~~L~~~~~~~~~~------~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~t~l~~a~  197 (318)
                      |..|++.+.+..+..++..|.++...      +..|+||||+|+..   +..+++++|+++|++++.++..|+||||+|+
T Consensus        10 L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~   89 (154)
T d1dcqa1          10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCC   89 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccccc
Confidence            44556666666666666666554433      55688999999874   5689999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHhHHHHHHhCCCCC
Q psy4998         198 HFGQLNMVRYLVENGANVNATTNLGYTPLHQASQQGRVLIIDLLLGAGAQP  248 (318)
Q Consensus       198 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~  248 (318)
                      ..|+.+++++|+++|++++.+|..|.||||+|++.|+.+++++|++.+...
T Consensus        90 ~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          90 LTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             ccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            999999999999999999999999999999999999999999999976543

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.1e-23  Score=170.27  Aligned_cols=172  Identities=17%  Similarity=0.178  Sum_probs=120.7

Q ss_pred             CCCChhHHHHHHhCCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCH-------HHHHHHHhccCCcccccCCCChH
Q psy4998          54 GKVKLPALHIAAKKDDCKAAALLLENDHSPDVKSNSHFTPLHIAAHYGNT-------NIAELLIQKHANVNNQAKHNITP  126 (318)
Q Consensus        54 ~~~~~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~-------~~~~~ll~~~~~~~~~~~~~~~~  126 (318)
                      +..|.||||+|+..|+.++++.|+++|++++..+..|.||||.|+..++.       ++++++..   ....++..|.+|
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~~~~d~~g~t~  180 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CLILEDSMNRTI  180 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GGGEECTTCCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hhhhcccccCCH
Confidence            56788999999999999999999999999999999999999999987642       34444433   345567789999


Q ss_pred             HHHHHHcCc----HH--------HHHHHHHcCCCC-CccCCCCChHHHHHHHcCCHHHH-----HHHHHcCCCCcCCCCC
Q psy4998         127 LHVACKWGK----VA--------MVELLISKGANI-EAKTRDGLTPLHCAARSGHDNVI-----DILIEKGAALYSKTKA  188 (318)
Q Consensus       127 l~~a~~~~~----~~--------~~~~L~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~-----~~ll~~~~~~~~~~~~  188 (318)
                      +|.++..+.    ..        ++.++...+... ........++++.+........+     ..++..  .++.+|..
T Consensus       181 lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~in~~D~~  258 (301)
T d1sw6a_         181 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN--MLNAQDSN  258 (301)
T ss_dssp             HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH--TTTCCCTT
T ss_pred             HHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhc--CccCCCCC
Confidence            998876543    22        334455544332 22333344444444333332222     222222  26778999


Q ss_pred             CCcHhHHHhhcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Q psy4998         189 GFTPLHIASHFGQLNMVRYLVENGANVNATTNLGYTPLHQAS  230 (318)
Q Consensus       189 ~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~  230 (318)
                      |+||||+|++.|+.+++++|+++|++++.+|..|.|||++|+
T Consensus       259 G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         259 GDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            999999999999999999999999999999999999999985