Psyllid ID: psy5026

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
MTGSPQAWRFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFSTPYRPYADITVHRTVRTLILPYTVPSGLFSRITFREPVFVGGRGNTSGLSDKLPTEKGFKGCIRHLDINDHLYNFNVSPGGDSLKGIDVALLRPATHYQVSSIPDQVYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPDYNIVSPKVKIKSSFIGK
ccccccEEEEEEEEEEccccEEEEEEcccccccccEEEEEEEccEEEEEEcccccEEEEEEEEcEEEEEEEEcccccEEEEEccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEcccccEEEEEEcccccccccEEEEEEEccEEEEEEEccccEEEEEccccccccccEEEEEEEEccEEEEEEccEEcEEEEcccccccccccccEEEcccccccccccccccccccccc
cccccEEEEEEEEEEcccccEEEEEEcccccccccEEEEEEEccEEEEEEEcccccEEEEcccccccccEEEEEEccEEEEEccccEEEcccccccccccccccccccEEEEEEEEEcccEccccccccccccccccccEccccccccccccccccEEEcccccccEEEEEEEEEEccccEEEEEEcccccccccEEEEEEEccEEEEEEEcccccEEEEEccccccccEEEEEEEEEccEEEEEEcccccccccccccccEEcccccEEEcccccccccccccccccccccc
mtgspqawrfpiqfkpeswdgILFLtgerddlngDFMTLLIFEGYvefstpyrpyaditvHRTVRTLIlpytvpsglfsritfrepvfvggrgntsglsdklptekgfkgCIRHldindhlynfnvspggdslkgidvallrpathyqvssipdqVYQGLGEQYLSLLDLTIVFkaiepngillynghradgvGDFIALYLNDRyvdftfdlgtgaatlrssnpislgeWRKLRLTrtgrhaylqvdrfpssqilspgpftqLSLSLSLylggvpdynivspkvkikssfigk
mtgspqawrfpiqfkpesWDGILFLTGERDDLNGDFMTLLIFEGYVEFSTPYRPYADITVHRTVRTLILpytvpsglfsrITFREpvfvggrgntsglsdklptEKGFKGCIRHLDINDHLYNFNVSPGGDSLKGIDVALLRPATHYQVSSIPDQVYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGaatlrssnpislgewRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPdynivspkvkikssfigk
MTGSPQAWRFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFSTPYRPYADITVHRTVRTLILPYTVPSGLFSRITFREPVFVGGRGNTSGLSDKLPTEKGFKGCIRHLDINDHLYNFNVSPGGDSLKGIDVALLRPATHYQVSSIPDQVYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQlslslslylGGVPDYNIVSPKVKIKSSFIGK
*******WRFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFSTPYRPYADITVHRTVRTLILPYTVPSGLFSRITFREPVFVGGRGNTSGLSDKLPTEKGFKGCIRHLDINDHLYNFNVSPGGDSLKGIDVALLRPATHYQVSSIPDQVYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPDYNIVSPKVKI*******
*****QAWRFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFSTPYRPYADITVHRTVRTLILPYTVPSGLFSRITFREPVFVGGRGNTSGLSDKLPTEKGFKGCIRHLDINDHLYNFNVSPGGDSLKGIDVALLRPATHYQVSSIPDQVYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISLGEWRKLRLTRTGRHAYLQVDRF**************SLSLSLYLGGVPDYNIVSPK*K***SFI**
MTGSPQAWRFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFSTPYRPYADITVHRTVRTLILPYTVPSGLFSRITFREPVFVGGRGNTSGLSDKLPTEKGFKGCIRHLDINDHLYNFNVSPGGDSLKGIDVALLRPATHYQVSSIPDQVYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPDYNIVSPKVKIKSSFIGK
*TGSPQAWRFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFSTPYRPYADITVHRTVRTLILPYTVPSGLFSRITFREPVFVGGRGNTSGLSDKLPTEKGFKGCIRHLDINDHLYNFNVSPGGDSLKGIDVALLRPATHYQVSSIPDQVYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPDY***S************
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MTGSPQAWRFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFSTPYRPYADITVHRTVRTLILPYTVPSGLFSRITFREPVFVGGRGNTSGLSDKLPTEKGFKGCIRHLDINDHLYNFNVSPGGDSLKGIDVALLRPATHYQVSSIPDQVYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPDYNIVSPKVKIKSSFIGK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query293 2.2.26 [Sep-21-2011]
Q63HQ2 1017 Pikachurin OS=Homo sapien no N/A 0.989 0.285 0.268 2e-31
Q4VBE4 1017 Pikachurin OS=Mus musculu yes N/A 0.989 0.285 0.256 2e-30
A3KN33 1018 Pikachurin OS=Bos taurus yes N/A 0.989 0.284 0.259 4e-30
B4F785 1005 Pikachurin OS=Rattus norv yes N/A 0.989 0.288 0.254 4e-29
P25304 1959 Agrin OS=Rattus norvegicu no N/A 0.440 0.065 0.430 2e-24
A2ASQ1 1950 Agrin OS=Mus musculus GN= no N/A 0.440 0.066 0.430 4e-24
O00468 2067 Agrin OS=Homo sapiens GN= no N/A 0.440 0.062 0.423 6e-24
Q90404 1328 Agrin (Fragment) OS=Diplo N/A N/A 0.436 0.096 0.393 2e-22
P31696 2081 Agrin OS=Gallus gallus GN no N/A 0.426 0.060 0.364 1e-20
Q05793 3707 Basement membrane-specifi no N/A 0.402 0.031 0.376 8e-17
>sp|Q63HQ2|EGFLA_HUMAN Pikachurin OS=Homo sapiens GN=EGFLAM PE=1 SV=2 Back     alignment and function desciption
 Score =  136 bits (343), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 158/358 (44%), Gaps = 68/358 (18%)

Query: 1   MTGSPQAWRFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFSTPYRPYADITV 60
           +  S QA++  ++F+ E+ DG+L   GE +   GDFM+L I    ++F         I V
Sbjct: 402 LKNSYQAFQITLEFRAEAEDGLLLYCGENEHGRGDFMSLAIIRRSLQFRFNCGTGVAIIV 461

Query: 61  HRTV------RTLIL---------------PYTVPS-GLFSRITFREPVFVGGRGNTSGL 98
             T        T++L               P T  S G +S+ITFR P+++GG  +   L
Sbjct: 462 SETKIKLGGWHTVMLYRDGLNGLLQLNNGTPVTGQSQGQYSKITFRTPLYLGGAPSAYWL 521

Query: 99  SDKLPTEKGFKGCIRHLDINDHLYNFNVSPGGDSLKGIDVALLRPATHYQVSSIPDQVYQ 158
                T +GF+GC++ L +N    +    P G +L G DV         + S I      
Sbjct: 522 VRATGTNRGFQGCVQSLAVNGRRIDMRPWPLGKALSGADVGECSSGICDEASCIHGGTCT 581

Query: 159 GLG--------------------------------------------EQYLSLLDLTIVF 174
            +                                             + YLS ++  I F
Sbjct: 582 AIKADSYICLCPLGFKGRHCEDAFTLTIPQFRESLRSYAATPWPLEPQHYLSFMEFEITF 641

Query: 175 KAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISLGEWRKLR 234
           +    +G+LLY+     G  DF+++ L   +V+F FD G+G   LRS +P++LG W +LR
Sbjct: 642 RPDSGDGVLLYS--YDTGSKDFLSINLAGGHVEFRFDCGSGTGVLRSEDPLTLGNWHELR 699

Query: 235 LTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPDYNIVSPKVKIKSSFIG 292
           ++RT ++  LQVD+    + ++ G FTQ+  +  +++GGVP+Y+ V     +   F G
Sbjct: 700 VSRTAKNGILQVDKQKIVEGMAEGGFTQIKCNTDIFIGGVPNYDDVKKNSGVLKPFSG 757
Involved in both the retinal photoreceptor ribbon synapse formation and physiological functions of visual perception. Necessary for proper bipolar dendritic tip apposition to the photoreceptor ribbon synapse. Promotes matrix assembly and cell adhesiveness.
Homo sapiens (taxid: 9606)
>sp|Q4VBE4|EGFLA_MOUSE Pikachurin OS=Mus musculus GN=Egflam PE=1 SV=1 Back     alignment and function description
>sp|A3KN33|EGFLA_BOVIN Pikachurin OS=Bos taurus GN=EGFLAM PE=2 SV=1 Back     alignment and function description
>sp|B4F785|EGFLA_RAT Pikachurin OS=Rattus norvegicus GN=Egflam PE=2 SV=1 Back     alignment and function description
>sp|P25304|AGRIN_RAT Agrin OS=Rattus norvegicus GN=Agrn PE=1 SV=2 Back     alignment and function description
>sp|A2ASQ1|AGRIN_MOUSE Agrin OS=Mus musculus GN=Agrn PE=1 SV=1 Back     alignment and function description
>sp|O00468|AGRIN_HUMAN Agrin OS=Homo sapiens GN=AGRN PE=1 SV=5 Back     alignment and function description
>sp|Q90404|AGRIN_DIPOM Agrin (Fragment) OS=Diplobatis ommata GN=AGRN PE=2 SV=1 Back     alignment and function description
>sp|P31696|AGRIN_CHICK Agrin OS=Gallus gallus GN=AGRN PE=1 SV=3 Back     alignment and function description
>sp|Q05793|PGBM_MOUSE Basement membrane-specific heparan sulfate proteoglycan core protein OS=Mus musculus GN=Hspg2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query293
242004510 744 laminin gamma-3 chain, putative [Pedicul 0.952 0.375 0.464 9e-78
345492856 805 PREDICTED: pikachurin-like [Nasonia vitr 0.959 0.349 0.428 4e-71
383852766 894 PREDICTED: pikachurin-like [Megachile ro 0.959 0.314 0.428 8e-70
307180989 651 EGF-like, fibronectin type-III and lamin 0.959 0.431 0.422 8e-69
350400577 896 PREDICTED: pikachurin-like [Bombus impat 0.959 0.313 0.419 4e-68
328780429 908 PREDICTED: pikachurin-like [Apis mellife 0.959 0.309 0.419 9e-68
380025122 903 PREDICTED: pikachurin-like [Apis florea] 0.959 0.311 0.419 9e-68
340713542 893 PREDICTED: pikachurin-like [Bombus terre 0.959 0.314 0.416 1e-66
189239107 774 PREDICTED: similar to AGAP005165-PA [Tri 0.952 0.360 0.427 2e-56
270011220 566 hypothetical protein TcasGA2_TC030664 [T 0.948 0.491 0.426 3e-55
>gi|242004510|ref|XP_002423126.1| laminin gamma-3 chain, putative [Pediculus humanus corporis] gi|212506072|gb|EEB10388.1| laminin gamma-3 chain, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  296 bits (757), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 158/340 (46%), Positives = 208/340 (61%), Gaps = 61/340 (17%)

Query: 9   RFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFSTPYRPYADITVHRTVRTLI 68
           +  ++F+PESWDGILFLTGERDD+ GDFM+LL+ +G++EF   +   + + V R+  T+ 
Sbjct: 163 QLEMEFRPESWDGILFLTGERDDMTGDFMSLLLHQGFLEFR--FDCGSGVGVVRSEETVN 220

Query: 69  LPY------------------TVPSGLFSRITFREPVFVGGRGNTSGLSDKLPTEKGFKG 110
           L                        GLFSRITFREPVF+GG GNT+GLSDKLPTE GFKG
Sbjct: 221 LNEWNKLILYRHRWDAWIQLNNGKHGLFSRITFREPVFIGGPGNTTGLSDKLPTESGFKG 280

Query: 111 CIRHLDINDHLYNFNVSPGGDSLKGIDVALLRPATHYQVSSIPDQ--------------- 155
           CIR+LDINDH Y+F   P GD++KG DV      T  + S +P Q               
Sbjct: 281 CIRYLDINDHTYSFEQYPNGDAIKGFDVL---ECTSDKCSEVPCQHSGKCLLSGEEAICL 337

Query: 156 -----------------------VYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADG 192
                                   Y GLG   LS LD+ +  K    +G++LYNGHR DG
Sbjct: 338 CPLGFTGDLCQTRVPAFNGSSYLRYPGLGNSVLSWLDIEMTLKPTSKDGVILYNGHRTDG 397

Query: 193 VGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISLGEWRKLRLTRTGRHAYLQVDRFPSS 252
           VGDF+A+ ++  + +FTFDLGTGAA++R   P+++GEW +LRL+RTGR A LQVD     
Sbjct: 398 VGDFMAISIHGGHFEFTFDLGTGAASVRIEKPVTMGEWHELRLSRTGRFAILQVDDQAPV 457

Query: 253 QILSPGPFTQLSLSLSLYLGGVPDYNIVSPKVKIKSSFIG 292
             L+PG FTQLSL  +LY+GG+P+ ++VSPKVKIK+SF+G
Sbjct: 458 HALAPGAFTQLSLPQNLYIGGIPNVDMVSPKVKIKTSFVG 497

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|345492856|ref|XP_001600956.2| PREDICTED: pikachurin-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|383852766|ref|XP_003701896.1| PREDICTED: pikachurin-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307180989|gb|EFN68763.1| EGF-like, fibronectin type-III and laminin G-like domain-containing protein [Camponotus floridanus] Back     alignment and taxonomy information
>gi|350400577|ref|XP_003485887.1| PREDICTED: pikachurin-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|328780429|ref|XP_393275.4| PREDICTED: pikachurin-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380025122|ref|XP_003696328.1| PREDICTED: pikachurin-like [Apis florea] Back     alignment and taxonomy information
>gi|340713542|ref|XP_003395301.1| PREDICTED: pikachurin-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|189239107|ref|XP_001813157.1| PREDICTED: similar to AGAP005165-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270011220|gb|EFA07668.1| hypothetical protein TcasGA2_TC030664 [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query293
FB|FBgn0034070 1361 SP2353 "SP2353" [Drosophila me 0.450 0.096 0.384 3.2e-48
UNIPROTKB|E1BQW4 1022 EGFLAM "Uncharacterized protei 0.440 0.126 0.351 1.1e-33
UNIPROTKB|F1N606 904 EGFLAM "Pikachurin" [Bos tauru 0.433 0.140 0.356 5.5e-33
UNIPROTKB|Q63HQ2 1017 EGFLAM "Pikachurin" [Homo sapi 0.440 0.126 0.351 5.6e-33
UNIPROTKB|A3KN33 1018 EGFLAM "Pikachurin" [Bos tauru 0.433 0.124 0.341 8.2e-32
MGI|MGI:2146149 1017 Egflam "EGF-like, fibronectin 0.440 0.126 0.351 1.7e-31
RGD|1306592 1005 Egflam "EGF-like, fibronectin 0.440 0.128 0.335 3.4e-28
UNIPROTKB|F1LQ53 963 Agrn "Agrin" [Rattus norvegicu 0.440 0.133 0.413 7.8e-27
MGI|MGI:87961 1950 Agrn "agrin" [Mus musculus (ta 0.440 0.066 0.401 1.8e-24
UNIPROTKB|F1NWQ6 1998 AGRN "Agrin" [Gallus gallus (t 0.426 0.062 0.349 2.5e-24
FB|FBgn0034070 SP2353 "SP2353" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 238 (88.8 bits), Expect = 3.2e-48, Sum P(3) = 3.2e-48
 Identities = 53/138 (38%), Positives = 79/138 (57%)

Query:   157 YQGLGEQYLSLLDLTIVFKAIEPNGILLYNG--HRADGVGDFIALYLNDRYVDFTFDLGT 214
             Y  LG+  L  L+L +  K  + +G++LY+G  HR    GDFIALYLND +V+F FDLG+
Sbjct:   633 YAPLGDSALIWLELKVTLKPEQADGLILYSGPEHR----GDFIALYLNDGFVEFAFDLGS 688

Query:   215 GAATLRSSNPISLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQXXXXXXXXXGGV 274
             G A +RS + +SLG+W  ++++RT R A L+VD+      +S   F           GGV
Sbjct:   689 GPALVRSEHSLSLGQWHTIKISRTARLAVLKVDKHQEVLTISSNGFWHLSLDQNLFVGGV 748

Query:   275 PDYNIVSPKVKIKSSFIG 292
                + +   +K K  F+G
Sbjct:   749 NHVDRLPLDLKYKPFFVG 766
GO:0003674 "molecular_function" evidence=ND
GO:0005615 "extracellular space" evidence=ISS
GO:0046716 "muscle cell homeostasis" evidence=IGI;IMP
GO:0042052 "rhabdomere development" evidence=IMP
UNIPROTKB|E1BQW4 EGFLAM "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1N606 EGFLAM "Pikachurin" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q63HQ2 EGFLAM "Pikachurin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A3KN33 EGFLAM "Pikachurin" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2146149 Egflam "EGF-like, fibronectin type III and laminin G domains" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1306592 Egflam "EGF-like, fibronectin type III and laminin G domains" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LQ53 Agrn "Agrin" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:87961 Agrn "agrin" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NWQ6 AGRN "Agrin" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query293
smart00282132 smart00282, LamG, Laminin G domain 7e-25
cd00110151 cd00110, LamG, Laminin G domain; Laminin G-like do 7e-25
pfam02210124 pfam02210, Laminin_G_2, Laminin G domain 3e-23
pfam00054131 pfam00054, Laminin_G_1, Laminin G domain 3e-20
smart00282132 smart00282, LamG, Laminin G domain 3e-10
pfam02210124 pfam02210, Laminin_G_2, Laminin G domain 7e-09
cd00110151 cd00110, LamG, Laminin G domain; Laminin G-like do 2e-08
pfam00054131 pfam00054, Laminin_G_1, Laminin G domain 6e-07
>gnl|CDD|214598 smart00282, LamG, Laminin G domain Back     alignment and domain information 
 Score = 96.3 bits (240), Expect = 7e-25
 Identities = 45/125 (36%), Positives = 68/125 (54%), Gaps = 4/125 (3%)

Query: 169 DLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSS-NPISL 227
            ++  F+   PNG+LLY G +  G  D++AL L D  +   +DLG+G A L S   P++ 
Sbjct: 1   SISFSFRTTSPNGLLLYAGSKGGG--DYLALELRDGRLVLRYDLGSGPARLTSDPTPLND 58

Query: 228 GEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPDYNIVSPKVKIK 287
           G+W ++ + R GR   L VD        SPG  T L+L   LYLGG+P+ ++  P + + 
Sbjct: 59  GQWHRVAVERNGRSVTLSVDGGNRVSGESPGGLTILNLDGPLYLGGLPE-DLKLPPLPVT 117

Query: 288 SSFIG 292
             F G
Sbjct: 118 PGFRG 122

Length = 132
>gnl|CDD|238058 cd00110, LamG, Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans Back     alignment and domain information
>gnl|CDD|216930 pfam02210, Laminin_G_2, Laminin G domain Back     alignment and domain information
>gnl|CDD|215681 pfam00054, Laminin_G_1, Laminin G domain Back     alignment and domain information
>gnl|CDD|214598 smart00282, LamG, Laminin G domain Back     alignment and domain information
>gnl|CDD|216930 pfam02210, Laminin_G_2, Laminin G domain Back     alignment and domain information
>gnl|CDD|238058 cd00110, LamG, Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans Back     alignment and domain information
>gnl|CDD|215681 pfam00054, Laminin_G_1, Laminin G domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 293
KOG3514|consensus 1591 100.0
KOG3514|consensus 1591 100.0
KOG3516|consensus 1306 99.97
KOG4289|consensus 2531 99.96
KOG3516|consensus 1306 99.91
PF00054131 Laminin_G_1: Laminin G domain; InterPro: IPR012679 99.9
smart00282135 LamG Laminin G domain. 99.86
PF00054131 Laminin_G_1: Laminin G domain; InterPro: IPR012679 99.85
cd00110151 LamG Laminin G domain; Laminin G-like domains are 99.84
smart00282135 LamG Laminin G domain. 99.78
PF02210128 Laminin_G_2: Laminin G domain; InterPro: IPR012680 99.77
PF02210128 Laminin_G_2: Laminin G domain; InterPro: IPR012680 99.69
cd00110151 LamG Laminin G domain; Laminin G-like domains are 99.66
KOG4289|consensus 2531 99.48
KOG1219|consensus 4289 99.35
KOG1219|consensus 4289 99.07
smart00210184 TSPN Thrombospondin N-terminal -like domains. Hepa 98.66
smart00159206 PTX Pentraxin / C-reactive protein / pentaxin fami 97.9
cd00152201 PTX Pentraxins are plasma proteins characterized b 97.79
PF13385157 Laminin_G_3: Concanavalin A-like lectin/glucanases 97.78
smart00210184 TSPN Thrombospondin N-terminal -like domains. Hepa 97.52
PF00354195 Pentaxin: Pentaxin family; InterPro: IPR001759 Pen 97.48
PF02973190 Sialidase: Sialidase, N-terminal domain; InterPro: 96.9
smart00560133 LamGL LamG-like jellyroll fold domain. 95.12
PF06439185 DUF1080: Domain of Unknown Function (DUF1080); Int 94.32
KOG1834|consensus 952 93.92
PF02973190 Sialidase: Sialidase, N-terminal domain; InterPro: 93.55
PF13385157 Laminin_G_3: Concanavalin A-like lectin/glucanases 92.84
KOG3509|consensus 964 91.53
KOG3509|consensus 964 91.23
smart00159206 PTX Pentraxin / C-reactive protein / pentaxin fami 88.31
PF14099224 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 86.21
KOG3546|consensus 1167 85.63
cd00152201 PTX Pentraxins are plasma proteins characterized b 83.9
PF00354195 Pentaxin: Pentaxin family; InterPro: IPR001759 Pen 83.06
>KOG3514|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.8e-33  Score=262.58  Aligned_cols=274  Identities=23%  Similarity=0.445  Sum_probs=210.5

Q ss_pred             eeEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEECCEEEEEEeCC------------------CCCCeEEEEeccEEE
Q psy5026           7 AWRFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFSTPYR------------------PYADITVHRTVRTLI   68 (293)
Q Consensus         7 ~~~i~~~FrT~~~~GlL~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g------------------~w~~~~~~~~~~~v~   68 (293)
                      +-.|+|.|||.+++|+|||.+...    ||+-|.|++|-+.+.++++                  +||.+.+.|+...+.
T Consensus       274 ~d~itl~FrT~q~ngllfytG~~~----dYlnlaL~dGaV~l~~~l~~g~~e~~~~p~~~rfdD~~WH~V~v~R~~~m~t  349 (1591)
T KOG3514|consen  274 KDNITLTFRTVQGNGLLFYTGDEK----DYLNLALQDGAVSLSSKLDGGDAEIIRMPNSFRFDDDSWHTVIVERSLQMMT  349 (1591)
T ss_pred             ccceEEEEEEecCceeEEEccCCc----ceeeEeecCCcEEEEEecCCccceeEEccccccccCCcceEEEEEeeeEEEE
Confidence            347899999999999999999875    9999999999998876665                  799999998877777


Q ss_pred             ecccCC-------CCceeeeecCCceEEcCCCCCCCCCCCCCcccCceeeEEEEEEcCeeeeeccCCCCCcccccc---c
Q psy5026          69 LPYTVP-------SGLFSRITFREPVFVGGRGNTSGLSDKLPTEKGFKGCIRHLDINDHLYNFNVSPGGDSLKGID---V  138 (293)
Q Consensus        69 l~~~g~-------~~~~~~l~~~~~l~iGG~p~~~~~~~~~~~~~~F~GCi~~~~~n~~~~~~~~~~~~~~~~~~~---~  138 (293)
                      +..+|.       .+.+..|..+.-+|+||.|+...++. .  ..+|.||+++|.+....+.+....++.  +|..   +
T Consensus       350 ~~VDg~~t~~~~~a~~~tmlsss~~fyvgg~~~~~~l~g-s--rVsF~GClkkV~y~~d~~rl~L~~LAk--~g~~~~k~  424 (1591)
T KOG3514|consen  350 LIVDGRRTEIRQYAPELTMLSSSDFFYVGGSPNTADLPG-S--RVSFMGCLKKVVYKNDDTRLELSRLAK--QGDSKMKT  424 (1591)
T ss_pred             EEEccEEecccccccceeEeeccceEEecCCCCccccCC-C--ceeeeeeeeeeEeccCceeehhhHHhh--cCCceeEe
Confidence            665553       46777888888899999999877643 2  345999999999977654433322221  1211   1


Q ss_pred             c-c-ccccCCCC---cCCc----ceeEecCCccceeeEEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEeCCEEEEE
Q psy5026         139 A-L-LRPATHYQ---VSSI----PDQVYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFT  209 (293)
Q Consensus       139 ~-~-C~pC~~~~---~~~f----s~~~~~~~~~~~~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~l~l~l~~g~v~~~  209 (293)
                      . . --.|.+..   +.+|    ||+.+|.+...  +.-+|+|.|||.+++|||+|.........+|++++|-||++-+.
T Consensus       425 ~G~l~y~C~n~~~~DpvtFtt~es~l~LP~Wnt~--~~gSiSf~FRTtepnGlil~~~g~~~~~~d~~A~ELldghlyl~  502 (1591)
T KOG3514|consen  425 EGDLSYSCENVAQLDPVTFTTPESYLTLPRWNTK--KSGSISFDFRTTEPNGLILFHGGPQANATDYFAIELLDGHLYLL  502 (1591)
T ss_pred             eceEEEecCCCCccCceeeecccceeeccccccC--CcceeEEEEeecCCCceEEEccCcccccccEEEEEEeCCeEEEE
Confidence            0 0 01455554   2467    89999987443  45699999999999999999876544448999999999999999


Q ss_pred             EECCCceEEEE-ecCCCCCCCeEEEEEEEeCCEEEEEECCccceeEecCCCcccccCCCCeEEeccCCCCccCCCC---C
Q psy5026         210 FDLGTGAATLR-SSNPISLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPDYNIVSPKV---K  285 (293)
Q Consensus       210 ~~~g~~~~~~~-~~~~~~dg~wh~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyvGG~p~~~~~~~~~---~  285 (293)
                      +++|++...++ +..+++||+||+|.+.|.++..+++||.... ....|+...-|++++.+|+|-.|.....|+.+   .
T Consensus       503 ldlGSG~iklras~rkv~DGeWhhv~l~R~gR~gsvsVd~~~~-df~tpG~s~iL~ld~~mylG~~~n~l~~P~~vWta~  581 (1591)
T KOG3514|consen  503 LDLGSGVIKLRASSRKVNDGEWHHVDLQRDGRTGSVSVDAIKT-DFSTPGDSEILDLDDPMYLGEVPNNLVYPSEVWTAA  581 (1591)
T ss_pred             EecCCceEEeeeecccccCCceEEEEeeccCccceEEEeeeec-CccCCCcceeEeecCceeeccCCCCccCcHHHHHHH
Confidence            99999988887 5788999999999999999999999998743 44566777778999999999666554445443   2


Q ss_pred             cCCCcee
Q psy5026         286 IKSSFIG  292 (293)
Q Consensus       286 ~~~~F~G  292 (293)
                      .++||+|
T Consensus       582 L~~GyvG  588 (1591)
T KOG3514|consen  582 LRKGYVG  588 (1591)
T ss_pred             Hhccchh
Confidence            3566665

>KOG3514|consensus Back     alignment and domain information
>KOG3516|consensus Back     alignment and domain information
>KOG4289|consensus Back     alignment and domain information
>KOG3516|consensus Back     alignment and domain information
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function [] Back     alignment and domain information
>smart00282 LamG Laminin G domain Back     alignment and domain information
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function [] Back     alignment and domain information
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans Back     alignment and domain information
>smart00282 LamG Laminin G domain Back     alignment and domain information
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function [] Back     alignment and domain information
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function [] Back     alignment and domain information
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans Back     alignment and domain information
>KOG4289|consensus Back     alignment and domain information
>KOG1219|consensus Back     alignment and domain information
>KOG1219|consensus Back     alignment and domain information
>smart00210 TSPN Thrombospondin N-terminal -like domains Back     alignment and domain information
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family Back     alignment and domain information
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity Back     alignment and domain information
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A Back     alignment and domain information
>smart00210 TSPN Thrombospondin N-terminal -like domains Back     alignment and domain information
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits Back     alignment and domain information
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3 Back     alignment and domain information
>smart00560 LamGL LamG-like jellyroll fold domain Back     alignment and domain information
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function Back     alignment and domain information
>KOG1834|consensus Back     alignment and domain information
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A Back     alignment and domain information
>KOG3509|consensus Back     alignment and domain information
>KOG3509|consensus Back     alignment and domain information
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family Back     alignment and domain information
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A Back     alignment and domain information
>KOG3546|consensus Back     alignment and domain information
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity Back     alignment and domain information
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query293
3pve_A189 Crystal Structure Of The G2 Domain Of Agrin From Mu 2e-22
3sh4_A195 Laminin G Like Domain 3 From Human Perlecan Length 4e-10
1pz7_A204 Modulation Of Agrin Function By Alternative Splicin 1e-05
1pz8_A201 Modulation Of Agrin Function By Alternative Splicin 1e-05
3biw_E243 Crystal Structure Of The Neuroligin-1NEUREXIN-1beta 1e-05
1q56_A195 Nmr Structure Of The B0 Isoform Of The Agrin G3 Dom 1e-05
2r1d_A226 Crystal Structure Of Rat Neurexin 1beta In The Ca2+ 1e-05
3asi_A410 Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns 2e-05
3asi_A 410 Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns 2e-04
3vkf_C181 Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COM 2e-05
3mw4_A178 Crystal Structure Of Beta-Neurexin 3 Without The Sp 2e-05
1c4r_A182 The Structure Of The Ligand-Binding Domain Of Neure 2e-05
3mw3_A208 Crystal Structure Of Beta-Neurexin 2 With The Splic 2e-05
3b3q_E197 Crystal Structure Of A Synaptic Adhesion Complex Le 2e-05
2wqz_C179 Crystal Structure Of Synaptic Protein Neuroligin-4 2e-05
3poy_A 1019 Crystal Structure Of The Alpha-Neurexin-1 Ectodomai 2e-05
3poy_A 1019 Crystal Structure Of The Alpha-Neurexin-1 Ectodomai 8e-04
3bod_A178 Structure Of Mouse Beta-Neurexin 1 Length = 178 2e-05
3qcw_A 1245 Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), 2e-05
3r05_A 1254 Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), 2e-05
2r1b_A220 Crystal Structure Of Rat Neurexin 1beta With A Spli 3e-05
3mw2_A207 Crystal Structure Of Beta-Neurexin 1 With The Splic 3e-05
3bop_A175 Structure Of Mouse Beta-neurexin 2d4 Length = 175 4e-05
2wjs_A 608 Crystal Structure Of The Lg1-3 Region Of The Lamini 1e-04
3v64_A191 Crystal Structure Of Agrin And Lrp4 Length = 191 2e-04
2jd4_A 383 Mouse Laminin Alpha1 Chain, Domains Lg4-5 Length = 4e-04
1dyk_A 394 Laminin Alpha 2 Chain Lg4-5 Domain Pair Length = 39 7e-04
>pdb|3PVE|A Chain A, Crystal Structure Of The G2 Domain Of Agrin From Mus Musculus Length = 189 Back     alignment and structure 
Iteration: 1

 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 78/133 (58%), Gaps = 4/133 (3%)
Query: 160 LGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATL 219
           LGE+    + L +VF A  P+G+LLYNG + DG GDF++L L++R+++F +DLG GAA +
Sbjct: 32  LGEK----MALEMVFLARGPSGLLLYNGQKTDGKGDFVSLALHNRHLEFRYDLGKGAAII 87
Query: 220 RSSNPISLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQXXXXXXXXXGGVPDYNI 279
           RS  PI+LG W ++ L R GR   LQV   P     SP P T          GG PD++ 
Sbjct: 88  RSKEPIALGTWVRVFLERNGRKGALQVGDGPRVLGESPVPHTMLNLKEPLYVGGAPDFSK 147
Query: 280 VSPKVKIKSSFIG 292
           ++    + S F G
Sbjct: 148 LARGAAVASGFDG 160
>pdb|3SH4|A Chain A, Laminin G Like Domain 3 From Human Perlecan Length = 195 Back     alignment and structure
>pdb|1PZ7|A Chain A, Modulation Of Agrin Function By Alternative Splicing And Ca2+ Binding Length = 204 Back     alignment and structure
>pdb|1PZ8|A Chain A, Modulation Of Agrin Function By Alternative Splicing And Ca2+ Binding Length = 201 Back     alignment and structure
>pdb|3BIW|E Chain E, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta Synaptic Adhesion Complex Length = 243 Back     alignment and structure
>pdb|1Q56|A Chain A, Nmr Structure Of The B0 Isoform Of The Agrin G3 Domain In Its Ca2+ Bound State Length = 195 Back     alignment and structure
>pdb|2R1D|A Chain A, Crystal Structure Of Rat Neurexin 1beta In The Ca2+ Containing Form Length = 226 Back     alignment and structure
>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6 Length = 410 Back     alignment and structure
>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6 Length = 410 Back     alignment and structure
>pdb|3VKF|C Chain C, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX Length = 181 Back     alignment and structure
>pdb|3MW4|A Chain A, Crystal Structure Of Beta-Neurexin 3 Without The Splice Insert 4 Length = 178 Back     alignment and structure
>pdb|1C4R|A Chain A, The Structure Of The Ligand-Binding Domain Of Neurexin 1beta: Regulation Of Lns Domain Function By Alternative Splicing Length = 182 Back     alignment and structure
>pdb|3MW3|A Chain A, Crystal Structure Of Beta-Neurexin 2 With The Splice Insert 4 Length = 208 Back     alignment and structure
>pdb|3B3Q|E Chain E, Crystal Structure Of A Synaptic Adhesion Complex Length = 197 Back     alignment and structure
>pdb|2WQZ|C Chain C, Crystal Structure Of Synaptic Protein Neuroligin-4 In Complex With Neurexin-beta 1: Alternative Refinement Length = 179 Back     alignment and structure
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns 2-6 Length = 1019 Back     alignment and structure
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns 2-6 Length = 1019 Back     alignment and structure
>pdb|3BOD|A Chain A, Structure Of Mouse Beta-Neurexin 1 Length = 178 Back     alignment and structure
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice Inserts Length = 1245 Back     alignment and structure
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With Splice Insert Ss3 Length = 1254 Back     alignment and structure
>pdb|2R1B|A Chain A, Crystal Structure Of Rat Neurexin 1beta With A Splice Insert At Ss#4 Length = 220 Back     alignment and structure
>pdb|3MW2|A Chain A, Crystal Structure Of Beta-Neurexin 1 With The Splice Insert 4 Length = 207 Back     alignment and structure
>pdb|3BOP|A Chain A, Structure Of Mouse Beta-neurexin 2d4 Length = 175 Back     alignment and structure
>pdb|2WJS|A Chain A, Crystal Structure Of The Lg1-3 Region Of The Laminin Alpha2 Chain Length = 608 Back     alignment and structure
>pdb|3V64|A Chain A, Crystal Structure Of Agrin And Lrp4 Length = 191 Back     alignment and structure
>pdb|2JD4|A Chain A, Mouse Laminin Alpha1 Chain, Domains Lg4-5 Length = 383 Back     alignment and structure
>pdb|1DYK|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair Length = 394 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query293
2jd4_A383 Laminin subunit alpha-1; basement membrane protein 2e-42
2jd4_A 383 Laminin subunit alpha-1; basement membrane protein 8e-31
2jd4_A383 Laminin subunit alpha-1; basement membrane protein 5e-10
1dyk_A394 Laminin alpha 2 chain; metal binding protein; 2.0A 8e-40
1dyk_A 394 Laminin alpha 2 chain; metal binding protein; 2.0A 8e-28
1dyk_A394 Laminin alpha 2 chain; metal binding protein; 2.0A 3e-10
2wjs_A 608 Laminin subunit alpha-2; integrin, secreted, coile 7e-39
2wjs_A608 Laminin subunit alpha-2; integrin, secreted, coile 2e-29
2wjs_A 608 Laminin subunit alpha-2; integrin, secreted, coile 3e-23
2wjs_A608 Laminin subunit alpha-2; integrin, secreted, coile 2e-09
3pve_A189 Agrin, AGRN protein; mRNA splicing, structural gen 3e-38
3pve_A189 Agrin, AGRN protein; mRNA splicing, structural gen 8e-18
3asi_A410 Neurexin-1-alpha; beta-sandwich, cell adhesion, sy 1e-34
3asi_A 410 Neurexin-1-alpha; beta-sandwich, cell adhesion, sy 1e-22
3asi_A410 Neurexin-1-alpha; beta-sandwich, cell adhesion, sy 3e-09
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 1e-34
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 9e-34
3qcw_A1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 5e-33
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 3e-28
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 1e-26
3qcw_A1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 5e-10
1pz7_A204 Agrin; structural protein; 1.42A {Gallus gallus} S 7e-34
1pz7_A204 Agrin; structural protein; 1.42A {Gallus gallus} S 8e-14
3v64_A191 Low-density lipoprotein receptor-related protein; 1e-32
3v64_A191 Low-density lipoprotein receptor-related protein; 2e-13
3sh4_A195 LG3 peptide; actin disassambly, integrin alpha12 B 2e-32
3sh4_A195 LG3 peptide; actin disassambly, integrin alpha12 B 3e-13
2r16_A182 Neurexin-1-alpha; beta-sandwich, cell adhesion, sp 2e-28
2r16_A182 Neurexin-1-alpha; beta-sandwich, cell adhesion, sp 8e-10
2h0b_A184 Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A 8e-28
2h0b_A184 Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A 5e-14
1h30_A422 GAS6, growth-arrest-specific protein; laminin G-do 8e-26
1f5f_A205 SHBG, sex hormone-binding globulin; jellyroll, sig 3e-24
1f5f_A205 SHBG, sex hormone-binding globulin; jellyroll, sig 7e-10
3bod_A178 Neurexin-1-alpha; neurexin1D, LNS6, alternative sp 2e-22
3bod_A178 Neurexin-1-alpha; neurexin1D, LNS6, alternative sp 2e-08
2r1d_A226 Neurexin-1-beta, neurexin I-beta; beta-sandwich, c 3e-21
2r1d_A226 Neurexin-1-beta, neurexin I-beta; beta-sandwich, c 4e-08
1d2s_A170 SHBG, sex hormone-binding globulin; steroid transp 9e-21
1d2s_A170 SHBG, sex hormone-binding globulin; steroid transp 4e-08
2r1b_A220 Neurexin-1-beta, neurexin I-beta; beta-sandwich, c 1e-19
2r1b_A220 Neurexin-1-beta, neurexin I-beta; beta-sandwich, c 6e-04
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Length = 383 Back     alignment and structure
 Score =  148 bits (375), Expect = 2e-42
 Identities = 50/307 (16%), Positives = 99/307 (32%), Gaps = 35/307 (11%)

Query: 12  IQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFS----------TPYRPYAD---- 57
           +  +  +  G+++    ++    D+ TL + EG + F           +     +D    
Sbjct: 49  LSIRTFASSGLIYYVAHQNQ--MDYATLQLQEGRLHFMFDLGKGRTKVSHPALLSDGKWH 106

Query: 58  -ITVHRTVRTLIL-------PYTVPSGLFSRITFREPVFVGGRGNTSGLSDKLPTEKGFK 109
            +      R   +       P     G  + +     +++GG  +     +         
Sbjct: 107 TVKTEYIKRKAFMTVDGQESPSVTVVGKATTLDVERKLYLGGLPSHYRARNIGTITHSIP 166

Query: 110 GCIRHLDINDHLYNFNVSPGGDSLKGIDVALLRPATHYQVSSIPDQVYQGLGEQYLSLLD 169
            CI  + +N    + +      ++    V                      G +    L 
Sbjct: 167 ACIGEIMVNGQQLDKDRPLSASAVDRCYVVAQEGTFFEGSGYA---ALVKEGYKVRLDLQ 223

Query: 170 LTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAAT----LRSSNPI 225
           +T+ F+    NG+LL          D I L + D  V F  + G G  T     R++  +
Sbjct: 224 ITLEFRTTSKNGVLLGIS---SAKVDAIGLEIVDGKVLFHVNNGAGRITATYQPRAARAL 280

Query: 226 SLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPDYNIVSPKVK 285
             G+W  L+  ++     L VD             T    +  +Y+GG P  +I    + 
Sbjct: 281 CDGKWHTLQAHKSKHRIVLTVDGNSVRAESPHTHSTSADTNDPIYVGGYPA-HIKQNSLS 339

Query: 286 IKSSFIG 292
            ++SF G
Sbjct: 340 SRASFRG 346
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Length = 383 Back     alignment and structure
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Length = 383 Back     alignment and structure
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Length = 394 Back     alignment and structure
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Length = 394 Back     alignment and structure
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Length = 394 Back     alignment and structure
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608 Back     alignment and structure
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608 Back     alignment and structure
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608 Back     alignment and structure
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608 Back     alignment and structure
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus} Length = 189 Back     alignment and structure
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus} Length = 189 Back     alignment and structure
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410 Back     alignment and structure
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410 Back     alignment and structure
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410 Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 Back     alignment and structure
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A Length = 204 Back     alignment and structure
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A Length = 204 Back     alignment and structure
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A Length = 191 Back     alignment and structure
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A Length = 191 Back     alignment and structure
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A Length = 195 Back     alignment and structure
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A Length = 195 Back     alignment and structure
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus} Length = 182 Back     alignment and structure
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus} Length = 182 Back     alignment and structure
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus} Length = 184 Back     alignment and structure
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus} Length = 184 Back     alignment and structure
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Length = 422 Back     alignment and structure
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A* Length = 205 Back     alignment and structure
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A* Length = 205 Back     alignment and structure
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A* Length = 178 Back     alignment and structure
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A* Length = 178 Back     alignment and structure
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E* Length = 226 Back     alignment and structure
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E* Length = 226 Back     alignment and structure
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A* Length = 170 Back     alignment and structure
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A* Length = 170 Back     alignment and structure
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A* Length = 220 Back     alignment and structure
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A* Length = 220 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query293
2jd4_A383 Laminin subunit alpha-1; basement membrane protein 100.0
1dyk_A394 Laminin alpha 2 chain; metal binding protein; 2.0A 100.0
2wjs_A 608 Laminin subunit alpha-2; integrin, secreted, coile 100.0
3asi_A410 Neurexin-1-alpha; beta-sandwich, cell adhesion, sy 100.0
1h30_A422 GAS6, growth-arrest-specific protein; laminin G-do 100.0
2wjs_A608 Laminin subunit alpha-2; integrin, secreted, coile 100.0
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 100.0
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 100.0
3pve_A189 Agrin, AGRN protein; mRNA splicing, structural gen 99.92
2r16_A182 Neurexin-1-alpha; beta-sandwich, cell adhesion, sp 99.9
1pz7_A204 Agrin; structural protein; 1.42A {Gallus gallus} S 99.9
3sh4_A195 LG3 peptide; actin disassambly, integrin alpha12 B 99.9
3v64_A191 Low-density lipoprotein receptor-related protein; 99.89
1d2s_A170 SHBG, sex hormone-binding globulin; steroid transp 99.89
2h0b_A184 Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A 99.87
2jd4_A 383 Laminin subunit alpha-1; basement membrane protein 99.87
1f5f_A205 SHBG, sex hormone-binding globulin; jellyroll, sig 99.87
3bod_A178 Neurexin-1-alpha; neurexin1D, LNS6, alternative sp 99.87
1dyk_A 394 Laminin alpha 2 chain; metal binding protein; 2.0A 99.86
2r1b_A220 Neurexin-1-beta, neurexin I-beta; beta-sandwich, c 99.85
3v64_A191 Low-density lipoprotein receptor-related protein; 99.85
1pz7_A204 Agrin; structural protein; 1.42A {Gallus gallus} S 99.84
3pve_A189 Agrin, AGRN protein; mRNA splicing, structural gen 99.84
2r1d_A226 Neurexin-1-beta, neurexin I-beta; beta-sandwich, c 99.84
3sh4_A195 LG3 peptide; actin disassambly, integrin alpha12 B 99.84
1h30_A 422 GAS6, growth-arrest-specific protein; laminin G-do 99.82
1d2s_A170 SHBG, sex hormone-binding globulin; steroid transp 99.82
3asi_A 410 Neurexin-1-alpha; beta-sandwich, cell adhesion, sy 99.81
2h0b_A184 Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A 99.81
2r16_A182 Neurexin-1-alpha; beta-sandwich, cell adhesion, sp 99.8
1f5f_A205 SHBG, sex hormone-binding globulin; jellyroll, sig 99.8
3bod_A178 Neurexin-1-alpha; neurexin1D, LNS6, alternative sp 99.79
2r1d_A226 Neurexin-1-beta, neurexin I-beta; beta-sandwich, c 99.77
2r1b_A220 Neurexin-1-beta, neurexin I-beta; beta-sandwich, c 99.76
3flp_A217 SAP-like pentraxin; physiological doubly-stacked h 98.17
1za4_A251 Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cel 98.17
2v73_A191 CBM40, putative EXO-alpha-sialidase; carbohydrate- 98.16
2erf_A209 Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sug 98.06
3kqr_A204 Serum amyloid P-component; glycoprotein, disulfide 98.02
3pvn_A206 C-reactive protein; pentraxin family, immune syste 97.98
2uur_A245 Collagen alpha-1(IX) chain; glycoprotein, hydroxyl 97.9
4b1m_A185 Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacil 96.74
4dqa_A355 Uncharacterized protein; two domains structure, DU 96.74
2v73_A191 CBM40, putative EXO-alpha-sialidase; carbohydrate- 96.42
2sli_A 679 Intramolecular trans-sialidase; hydrolase, neurami 95.48
2jkb_A 686 Sialidase B; intramolecular trans-sialidase, lyase 95.38
3zr5_A656 Galactocerebrosidase; hydrolase, GALC, glycosyl hy 91.48
1za4_A251 Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cel 91.13
3pvn_A206 C-reactive protein; pentraxin family, immune syste 90.42
1a8d_A 452 Tetanus neurotoxin; clostridial, ganglioside bindi 89.08
4azz_A172 Levanase; hydrolase; 1.70A {Bacillus subtilis} 88.54
2erf_A209 Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sug 87.96
2gy5_A423 Angiopoietin-1 receptor; ligand-binding domain, tr 85.61
2uur_A245 Collagen alpha-1(IX) chain; glycoprotein, hydroxyl 84.87
3kqr_A204 Serum amyloid P-component; glycoprotein, disulfide 83.75
3flp_A217 SAP-like pentraxin; physiological doubly-stacked h 83.18
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=5.2e-42  Score=309.56  Aligned_cols=277  Identities=17%  Similarity=0.235  Sum_probs=205.9

Q ss_pred             CCceeEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEECCEEEEEEeCC---------------CCCCeEEEEeccEEE
Q psy5026           4 SPQAWRFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFSTPYR---------------PYADITVHRTVRTLI   68 (293)
Q Consensus         4 ~~~~~~i~~~FrT~~~~GlL~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g---------------~w~~~~~~~~~~~v~   68 (293)
                      .+..++|+|+|||.+++|+|||.++..  ..||++|+|.+|+|++.+++|               +||.+.+.+..+.+.
T Consensus        41 ~~~~~~is~~frT~~~~GlLly~~~~~--~~d~~~l~L~~G~l~~~~~~g~~~~~~~~~~~~~Dg~WH~V~v~r~~~~~~  118 (383)
T 2jd4_A           41 VRKRLQVQLSIRTFASSGLIYYVAHQN--QMDYATLQLQEGRLHFMFDLGKGRTKVSHPALLSDGKWHTVKTEYIKRKAF  118 (383)
T ss_dssp             CSSEEEEEEEEEECCSCEEEEEEECTT--SSSEEEEEEETTEEEEEEECSSCEEEEECCCCCTTSSCEEEEEEEETTEEE
T ss_pred             cccceEEEEEEEcCCCCeEEEEeCCCC--CCcEEEEEEECCEEEEEEECCCCeEEEeCcceecCCCcEEEEEEEeCCEEE
Confidence            456789999999999999999998642  469999999999999988655               799999999888877


Q ss_pred             ecccCC-------CCceeeeecCCceEEcCCCCCCCCCCCCCcccCceeeEEEEEEcCeeeeeccCCCCCcccccccccc
Q psy5026          69 LPYTVP-------SGLFSRITFREPVFVGGRGNTSGLSDKLPTEKGFKGCIRHLDINDHLYNFNVSPGGDSLKGIDVALL  141 (293)
Q Consensus        69 l~~~g~-------~~~~~~l~~~~~l~iGG~p~~~~~~~~~~~~~~F~GCi~~~~~n~~~~~~~~~~~~~~~~~~~~~~C  141 (293)
                      |..++.       ++....++....+||||+|.............+|+|||+++.+|++.+++...     ....++..|
T Consensus       119 L~VD~~~~~~~~~~g~~~~l~~~~~l~vGG~p~~~~~~~~~~~~~~F~GCi~~l~in~~~l~l~~~-----~~~~~~~~C  193 (383)
T 2jd4_A          119 MTVDGQESPSVTVVGKATTLDVERKLYLGGLPSHYRARNIGTITHSIPACIGEIMVNGQQLDKDRP-----LSASAVDRC  193 (383)
T ss_dssp             EEETTEECCCEECCSSCCCCCCCSEEEESSCCTTCCCCSSCSCCSBCCEEEEEEEETTEECCTTSC-----SEEESCBCC
T ss_pred             EEEcCccccceecCCCcceecCCCCeEEeccCcccccccccccCCCceEEeEEEEECCEEeccCCc-----cccCccccc
Confidence            755442       24455678888999999997543221223457899999999999998876542     122344455


Q ss_pred             cccCCCCcCCc---ceeEecCCccceeeEEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEeCCEEEEEEECCCceEE
Q psy5026         142 RPATHYQVSSI---PDQVYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAAT  218 (293)
Q Consensus       142 ~pC~~~~~~~f---s~~~~~~~~~~~~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~l~l~l~~g~v~~~~~~g~~~~~  218 (293)
                      .+....+ ..|   +|+.|..........+.|+|+|||++++|+|||.....   .+|++|+|.+|++.++++.|.+...
T Consensus       194 ~~~~~~g-~~F~g~sy~~~~~~~~~~~~~~~isl~frT~~~~GlLl~~~~~~---~d~l~l~L~~G~l~~~~~~g~g~~~  269 (383)
T 2jd4_A          194 YVVAQEG-TFFEGSGYAALVKEGYKVRLDLQITLEFRTTSKNGVLLGISSAK---VDAIGLEIVDGKVLFHVNNGAGRIT  269 (383)
T ss_dssp             BSSEESS-EEEEEEEEEEEEEEEECCBSCEEEEEEEEESCSCEEEEEEECSS---SCEEEEEEETTEEEEEEESSSCEEE
T ss_pred             cCcCccC-ceECCCeEEEEecCccccCCceEEEEEEEeCCCCEEEEEecCCC---CcEEEEEEECCEEEEEEECCCCcEE
Confidence            4322111 135   79988422223334679999999999999999987643   7899999999999999999987655


Q ss_pred             EEe----cCCCCCCCeEEEEEEEeCCEEEEEECCccceeEecCCCcccccCCCCeEEeccCCCCccCCCCCcCCCcee
Q psy5026         219 LRS----SNPISLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPDYNIVSPKVKIKSSFIG  292 (293)
Q Consensus       219 ~~~----~~~~~dg~wh~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyvGG~p~~~~~~~~~~~~~~F~G  292 (293)
                      +..    ...+|||+||+|.+.|.++.+.|.||+........+.....++....+||||+|+.... .......+|+|
T Consensus       270 ~~~~~~~~~~l~DG~WH~V~l~~~~~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lylGG~p~~~~~-~~~~~~~~F~G  346 (383)
T 2jd4_A          270 ATYQPRAARALCDGKWHTLQAHKSKHRIVLTVDGNSVRAESPHTHSTSADTNDPIYVGGYPAHIKQ-NSLSSRASFRG  346 (383)
T ss_dssp             EEECCSSTTGGGSSSCEEEEEEEETTEEEEEETTEEEEEC----CCCCBCCCEEEEESCCCTTSCC-TTCSCCCBCEE
T ss_pred             EEEecCCCccccCCCcEEEEEEEcCCEEEEEECCeecccccCCCCcccccCCCCEEEecccccccc-CCccccCCCce
Confidence            442    45699999999999999999999999985433222223345677778999999986432 23455688987
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Back     alignment and structure
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Back     alignment and structure
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Back     alignment and structure
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Back     alignment and structure
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Back     alignment and structure
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus} Back     alignment and structure
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus} Back     alignment and structure
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A Back     alignment and structure
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A Back     alignment and structure
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A Back     alignment and structure
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A* Back     alignment and structure
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus} Back     alignment and structure
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Back     alignment and structure
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A* Back     alignment and structure
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A* Back     alignment and structure
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Back     alignment and structure
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A* Back     alignment and structure
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A Back     alignment and structure
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A Back     alignment and structure
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus} Back     alignment and structure
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E* Back     alignment and structure
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A Back     alignment and structure
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Back     alignment and structure
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A* Back     alignment and structure
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Back     alignment and structure
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus} Back     alignment and structure
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus} Back     alignment and structure
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A* Back     alignment and structure
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A* Back     alignment and structure
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E* Back     alignment and structure
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A* Back     alignment and structure
>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A Back     alignment and structure
>1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET: SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A 2ouj_A Back     alignment and structure
>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module, bacterial pathogen, sialic acid, sugar-binding protein; HET: SIA; 2.2A {Clostridium perfringens} Back     alignment and structure
>2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A 1z78_A Back     alignment and structure
>3kqr_A Serum amyloid P-component; glycoprotein, disulfide bond, lectin, metal-binding secreted; HET: NAG; 1.50A {Homo sapiens} SCOP: b.29.1.5 PDB: 1lgn_A* 1gyk_A 2a3w_A* 2a3x_A* 2a3y_A* 1sac_A* 3d5o_A* 2w08_A* Back     alignment and structure
>3pvn_A C-reactive protein; pentraxin family, immune system; 1.98A {Homo sapiens} SCOP: b.29.1.5 PDB: 1gnh_A 1lj7_A 3l2y_A 1b09_A 3pvo_A Back     alignment and structure
>2uur_A Collagen alpha-1(IX) chain; glycoprotein, hydroxylation, structural protein, NC4, collagen IX, polymorphism, extracellular matrix; 1.8A {Homo sapiens} Back     alignment and structure
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A Back     alignment and structure
>4dqa_A Uncharacterized protein; two domains structure, DUF 1735, laminin_G_3 concanavalin A- lectin/glucanases superfamily domain; HET: MSE; 1.50A {Bacteroides ovatus} Back     alignment and structure
>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module, bacterial pathogen, sialic acid, sugar-binding protein; HET: SIA; 2.2A {Clostridium perfringens} Back     alignment and structure
>2sli_A Intramolecular trans-sialidase; hydrolase, neuraminidase; HET: SKD; 1.80A {Macrobdella decora} SCOP: b.29.1.9 b.68.1.1 PDB: 1sll_A 1sli_A* 3sli_A* 4sli_A* Back     alignment and structure
>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase, neuraminidase; HET: SKD; 1.54A {Streptococcus pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A* Back     alignment and structure
>3zr5_A Galactocerebrosidase; hydrolase, GALC, glycosyl hydrolase, krabbe disease, TIM BAR lectin domain; HET: NAG; 2.10A {Mus musculus} PDB: 3zr6_A* Back     alignment and structure
>1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET: SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A 2ouj_A Back     alignment and structure
>3pvn_A C-reactive protein; pentraxin family, immune system; 1.98A {Homo sapiens} SCOP: b.29.1.5 PDB: 1gnh_A 1lj7_A 3l2y_A 1b09_A 3pvo_A Back     alignment and structure
>1a8d_A Tetanus neurotoxin; clostridial, ganglioside binding region; 1.57A {Clostridium tetani} SCOP: b.29.1.6 b.42.4.2 PDB: 1af9_A 1fv3_A* 1fv2_A* 3hmy_A* 3hn1_A* 1d0h_A* 1dfq_A* 1dll_A* 1yxw_A* 1yyn_A* 1diw_A* Back     alignment and structure
>4azz_A Levanase; hydrolase; 1.70A {Bacillus subtilis} Back     alignment and structure
>2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A 1z78_A Back     alignment and structure
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Back     alignment and structure
>2uur_A Collagen alpha-1(IX) chain; glycoprotein, hydroxylation, structural protein, NC4, collagen IX, polymorphism, extracellular matrix; 1.8A {Homo sapiens} Back     alignment and structure
>3kqr_A Serum amyloid P-component; glycoprotein, disulfide bond, lectin, metal-binding secreted; HET: NAG; 1.50A {Homo sapiens} SCOP: b.29.1.5 PDB: 1lgn_A* 1gyk_A 2a3w_A* 2a3x_A* 2a3y_A* 1sac_A* 3d5o_A* 2w08_A* Back     alignment and structure
>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 293
d1h30a1191 b.29.1.4 (A:261-451) Growth-arrest-specific protei 4e-21
d1h30a1191 b.29.1.4 (A:261-451) Growth-arrest-specific protei 5e-07
d1pz7a_195 b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxI 1e-20
d1pz7a_195 b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxI 1e-08
d1dyka1189 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse 2e-18
d1dyka1189 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse 5e-10
d1dyka2185 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse 2e-18
d1dyka2185 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse 4e-08
d1d2sa_170 b.29.1.4 (A:) Sex hormone-binding globulin {Human 3e-17
d1d2sa_170 b.29.1.4 (A:) Sex hormone-binding globulin {Human 2e-08
d2r1da1177 b.29.1.4 (A:36-212) Ligand-binding domain of neure 6e-14
d2r1da1177 b.29.1.4 (A:36-212) Ligand-binding domain of neure 2e-04
d1h30a2218 b.29.1.4 (A:461-678) Growth-arrest-specific protei 5e-11
d1h30a2218 b.29.1.4 (A:461-678) Growth-arrest-specific protei 4e-04
>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.4 bits (213), Expect = 4e-21
 Identities = 35/180 (19%), Positives = 61/180 (33%), Gaps = 15/180 (8%)

Query: 124 FNVSPGGDSLKGIDVAL-LRPATHYQVSSIPDQVYQGLGEQYLSL-------LDLTIVFK 175
             +S   D+ + I   +    A   +   +    + G     L         L     F+
Sbjct: 8   LKLSQDMDTCEDILPCVPFSVAKSVKSLYLGRM-FSGTPVIRLRFKRLQPTRLVAEFDFR 66

Query: 176 AIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISLGEWRKLRL 235
             +P GILL+ G   D    +I L L    ++             S   I+ G W+ + +
Sbjct: 67  TFDPEGILLFAGGHQDS--TWIVLALRAGRLELQLRYNGVGRVTSSGPVINHGMWQTISV 124

Query: 236 TRTGRHAYLQVDRFPSSQILSPGPFTQ---LSLSLSLYLGGVPDYNIVSPKVKIKSSFIG 292
               R+  ++V+R    +I   G   Q       L+L +GG+P  +       I     G
Sbjct: 125 EELARNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGIPF-HEKDLVQPINPRLDG 183
>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 Back     information, alignment and structure
>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 195 Back     information, alignment and structure
>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 195 Back     information, alignment and structure
>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 189 Back     information, alignment and structure
>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 189 Back     information, alignment and structure
>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 185 Back     information, alignment and structure
>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 185 Back     information, alignment and structure
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]} Length = 170 Back     information, alignment and structure
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]} Length = 170 Back     information, alignment and structure
>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 177 Back     information, alignment and structure
>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 177 Back     information, alignment and structure
>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Length = 218 Back     information, alignment and structure
>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Length = 218 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query293
d1dyka1189 Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 99.93
d1dyka1189 Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 99.88
d1dyka2185 Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 99.88
d1pz7a_195 Agrin {Chicken (Gallus gallus) [TaxId: 9031]} 99.87
d1h30a1191 Growth-arrest-specific protein Gas6 {Human (Homo s 99.86
d1d2sa_170 Sex hormone-binding globulin {Human (Homo sapiens) 99.86
d1pz7a_195 Agrin {Chicken (Gallus gallus) [TaxId: 9031]} 99.85
d2r1da1177 Ligand-binding domain of neurexin 1beta {Rat (Ratt 99.82
d1dyka2185 Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 99.82
d1d2sa_170 Sex hormone-binding globulin {Human (Homo sapiens) 99.81
d2r1da1177 Ligand-binding domain of neurexin 1beta {Rat (Ratt 99.78
d1h30a1191 Growth-arrest-specific protein Gas6 {Human (Homo s 99.74
d1h30a2218 Growth-arrest-specific protein Gas6 {Human (Homo s 99.7
d1h30a2218 Growth-arrest-specific protein Gas6 {Human (Homo s 99.65
d2erfa1206 Thrombospondin 1 N-terminal domain {Human (Homo sa 98.09
d1b09a_206 C-reactive protein (CRP) {Human (Homo sapiens) [Ta 97.55
d1saca_204 Serum amyloid P component (SAP) {Human (Homo sapie 97.52
d3btaa1207 Botulinum neurotoxin {Clostridium botulinum, serot 96.62
d2erfa1206 Thrombospondin 1 N-terminal domain {Human (Homo sa 96.36
d2slia1196 Leech intramolecular trans-sialidase, N-terminal d 96.33
d1epwa1218 Botulinum neurotoxin {Clostridium botulinum, serot 96.12
d1a8da1247 Tetanus neurotoxin {Clostridium tetani [TaxId: 151 95.9
d1b09a_206 C-reactive protein (CRP) {Human (Homo sapiens) [Ta 91.64
d2slia1196 Leech intramolecular trans-sialidase, N-terminal d 90.57
d1saca_204 Serum amyloid P component (SAP) {Human (Homo sapie 84.53
d1oq1a_223 Hypothetical protein YesU {Bacillus subtilis [TaxI 83.61
>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=2.2e-24  Score=173.48  Aligned_cols=137  Identities=23%  Similarity=0.381  Sum_probs=112.4

Q ss_pred             ceeEecCCccceeeEEEEEEEEEeCCCCeEEEEeccCCCCCCCeEEEEEeCCEEEEEEECCCceEEEEecCCCCCCCeEE
Q psy5026         153 PDQVYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISLGEWRK  232 (293)
Q Consensus       153 s~~~~~~~~~~~~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~l~l~l~~g~v~~~~~~g~~~~~~~~~~~~~dg~wh~  232 (293)
                      ||+.++..+......++|+|+|||..++|+|||++....  .+|++|+|.+|++.+.++.|++...+.++..++||+||+
T Consensus        25 s~~~~~~~~~~~~~~~~i~~~frT~~~~GlL~~~~~~~~--~dfi~l~l~~G~l~~~~~~g~~~~~~~~~~~v~Dg~WH~  102 (189)
T d1dyka1          25 SHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYMARINH--ADFATVQLRNGFPYFSYDLGSGDTSTMIPTKINDGQWHK  102 (189)
T ss_dssp             CEEEEECCGGGGSSEEEEEEEEEECCSCEEEEEEECTTS--SSEEEEEEETTEEEEEEESSSCEEEEECCSCCCSSSCEE
T ss_pred             ceEEEecCcccccccEEEEEEEEECCCCEEEEEEcCCCC--CcEEEEEEECCEEEEEEECCCccEEecCCcEeeCCCEEE
Confidence            788887554444568899999999999999999976544  789999999999999999998888888888999999999


Q ss_pred             EEEEEeCCEEEEEECCccceeEecCCCcccccCCCCeEEeccCCCCccCCCCCcCCCcee
Q psy5026         233 LRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPDYNIVSPKVKIKSSFIG  292 (293)
Q Consensus       233 V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyvGG~p~~~~~~~~~~~~~~F~G  292 (293)
                      |.+.|.++.++|.||+... ....+.....+++...+||||+|.............+|+|
T Consensus       103 V~v~~~~~~~~l~VD~~~~-~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~G  161 (189)
T d1dyka1         103 IKIVRVKQEGILYVDDASS-QTISPKKADILDVVGILYVGGLPINYTTRRIGPVTYSLDG  161 (189)
T ss_dssp             EEEEEETTEEEEEETTEEE-EEECSTTCCCCCCCSEEEESSCCTTCCCCSSCSCCSBCSE
T ss_pred             EEEEEcccEEEEEECCcce-eeEccCcccccccccceEEecccccccccccCcCCCCcEE
Confidence            9999999999999999854 3345555556777789999999976543333345678887
>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1saca_ b.29.1.5 (A:) Serum amyloid P component (SAP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3btaa1 b.29.1.6 (A:872-1078) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]} Back     information, alignment and structure
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase, N-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]} Back     information, alignment and structure
>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]} Back     information, alignment and structure
>d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]} Back     information, alignment and structure
>d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase, N-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]} Back     information, alignment and structure
>d1saca_ b.29.1.5 (A:) Serum amyloid P component (SAP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oq1a_ b.29.1.17 (A:) Hypothetical protein YesU {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure