Psyllid ID: psy5036

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MKTSLDYRFSPTSLMAAHPGLSPHSHPAIVTPGPKQELLSDHNHSGMRWGGMSKPSIMSWHVGSVNFICNFILIGPQGQTKPEARSGNEITNKNQMIQWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKERAPIIDTNGGTTHQININLIYPVIFITMQQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHccccccccccccccccccccccccccEEEEEEEEcEEEEEEccc
Coil and Loop (DISEMBL)
mktsldyrfsptslmaahpglsphshpaivtpgpkqellsdhnhsgmrwggmskpsimSWHVGSVNFICNFiligpqgqtkpearsgneitnknQMIQWHSLTREEQAKYYEKARQERQLHMelypgwsardnygygakkkkrkkerapiidtnggtthqinINLIYPVIFITMQQ
Flexible Loop (DISEMBL)
mktsldyrfSPTSLMAAHPGLSPHSHPAIVTPGPKQELLSDHNHSGMRWGGMSKPSIMSWHVGSVNFICNFILIGPQGQTKPEARSgneitnknqmiqWHSLTREEQAKYYEKARQERQLHmelypgwsardnygygakkkkrkkerapiidtnggtthqiniNLIYPVIFITMQQ
Low Complexity Region (SEG)
MKTSLDYRFSPTSLMAAHPGLSPHSHPAIVTPGPKQELLSDHNHSGMRWGGMSKPSIMSWHVGSVNFICNFILIGPQGQTKPEARSGNEITNKNQMIQWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAkkkkrkkERAPIIDTNGGTTHQININLIYPVIFITMQQ
Disordered region (IsUnstruct)
******************************************************PSIMSWHVGSVNFICNFILIG**********************QWH*******************LHMELYPGWSARDNYGYG************IIDTNGGTTHQININLIYPVIFIT***
Disordered Region (DISOPRED)
*********************************************************************NFILIGPQG****************QMIQWHSLTREEQAKYYEKARQERQLHMELYPGWSAR*************************************VIFIT***
Disordered Region (DISEMBL)
MKTSLDYRFSPTSLMAAHPGLSPHSHPAIVTPGPKQELLSDHNHSGMRWGGMSKPSIMSWHVGSVNFICNFILIGPQ********SGNEITNKNQMIQWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGY***********APIIDTNGGTTHQININLIYPVIFITMQQ
Disordered Region (DISPRO)
*************L*******SPHS*P*******************************SWHVGSVNFICNFILIGPQGQTKPEARSGNEITNKNQMIQWHSLTREEQAKYYEKARQERQLHMELYPGWSARDN***********************TTHQININLIYPVIFITMQ*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKTSLDYRFSPTSLMAAHPGLSPHSHPAIVTPGPKQELLSDHNHSGMRWGGMSKPSIMSWHVGSVNFICNFILIGPQGQTKPEARSGNEITNKNQMIQWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKERAPIIDTNGGTTHQININLIYPVIFITMQQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	176	2.2.26 [Sep-21-2011]
P36402	384	Transcription factor 7 OS	yes	N/A	0.721	0.330	0.446	2e-17
Q8IMA8	1192	Protein pangolin, isoform	yes	N/A	0.312	0.046	0.789	2e-17
P91943	751	Protein pangolin, isoform	no	N/A	0.346	0.081	0.734	3e-17
Q00417	419	Transcription factor 7 OS	yes	N/A	0.75	0.315	0.436	3e-16
Q9HCS4	588	Transcription factor 7-li	no	N/A	0.721	0.215	0.409	1e-15
Q9YHE8	560	Transcription factor 7-li	yes	N/A	0.801	0.251	0.404	4e-15
Q9NQB0	619	Transcription factor 7-li	no	N/A	0.238	0.067	0.772	1e-14
Q6GL68	553	Transcription factor 7-li	no	N/A	0.744	0.236	0.413	1e-14
Q924A0	459	Transcription factor 7-li	no	N/A	0.238	0.091	0.772	2e-14
Q9QXN1	397	Lymphoid enhancer-binding	no	N/A	0.238	0.105	0.772	2e-14

>sp|P36402|TCF7_HUMAN Transcription factor 7 OS=Homo sapiens GN=TCF7 PE=1 SV=3

 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/139 (44%), Positives = 80/139 (57%), Gaps = 12/139 (8%)

Query: 13  SLMAAHPGLSPHSHPAIVTPGPKQELLS-DHNHSGMRWGGMSKPSIMSWHVGSVNFICNF 71
           S +  HP   PH  PAIV P  KQEL   D N   ++    SK    +        +  F
Sbjct: 222 SGVPGHPAAIPH--PAIVPPSGKQELQPFDRN---LKTQAESKAEKEAKKPTIKKPLNAF 276

Query: 72  ILIGPQGQTKPEARSG-NEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGW 128
           +L   + + K  A     E    NQ++  +WH+L+REEQAKYYE AR+ERQLHM+LYPGW
Sbjct: 277 MLYMKEMRAKVIAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGW 336

Query: 129 SARDNYGYGAKKKKRKKER 147
           SARDNYG   KKK+R +E+
Sbjct: 337 SARDNYG---KKKRRSREK 352

Transcriptional activator involved in T-cell lymphocyte differentiation. Necessary for the survival of CD4(+) CD8(+) immature thymocytes. Isoforms lacking the N-terminal CTNNB1 binding domain cannot fulfill this role. Binds to the T-lymphocyte-specific enhancer element (5'-WWCAAAG-3') found in the promoter of the CD3E gene. May also act as feedback transcriptional repressor of CTNNB1 and TCF7L2 target genes. TLE1, TLE2, TLE3 and TLE4 repress transactivation mediated by TCF7 and CTNNB1.
Homo sapiens (taxid: 9606)

>sp|Q8IMA8|PANG2_DROME Protein pangolin, isoform J OS=Drosophila melanogaster GN=pan PE=1 SV=2

 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/57 (78%), Positives = 53/57 (92%), Gaps = 2/57 (3%)

Query: 94  NQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKERA 148
           NQ++  +WH L+REEQ+KYYEKARQERQLHMELYPGWSARDNYGY +KKKKRKK+R+
Sbjct: 745 NQILGRRWHELSREEQSKYYEKARQERQLHMELYPGWSARDNYGYVSKKKKRKKDRS 801

Segment polarity protein. Functions together with arm to transduce the Wingless (Wg) signal in embryos and in developing adult tissues. Acts as a transcriptional activator, but in the absence of arm, it binds to gro and acts as a transcriptional repressor of wg-responsive genes.

Drosophila melanogaster (taxid: 7227)

>sp|P91943|PANG1_DROME Protein pangolin, isoforms A/H/I OS=Drosophila melanogaster GN=pan PE=1 SV=1

 Score = 87.8 bits (216), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/64 (73%), Positives = 56/64 (87%), Gaps = 3/64 (4%)

Query: 94  NQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKERAPII 151
           NQ++  +WH L+REEQ+KYYEKARQERQLHMELYPGWSARDNYGY +KKKKRKK+R+   
Sbjct: 304 NQILGRRWHELSREEQSKYYEKARQERQLHMELYPGWSARDNYGYVSKKKKRKKDRS-TT 362

Query: 152 DTNG 155
           D+ G
Sbjct: 363 DSGG 366

Segment polarity protein. Functions together with arm to transduce the Wingless (Wg) signal in embryos and in developing adult tissues. Acts as a transcriptional activator, but in the absence of arm, it binds to gro and acts as a transcriptional repressor of wg-responsive genes.

Drosophila melanogaster (taxid: 7227)

>sp|Q00417|TCF7_MOUSE Transcription factor 7 OS=Mus musculus GN=Tcf7 PE=2 SV=2

 Score = 84.7 bits (208), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 81/149 (54%), Gaps = 17/149 (11%)

Query: 8   RFSPTSLM-----AAHPGLSPHSHPAIVTPGPKQELLS-DHNHSGMRWGGMSKPSIMSWH 61
           RF+  SLM       HP   PH  PAIV    KQEL   D N          K +     
Sbjct: 247 RFTHPSLMLGSGVPGHPAAIPH--PAIVPSSGKQELQPYDRNLKTQAEPKAEKEAKKPVI 304

Query: 62  VGSVNFICNFILIGPQGQTKPEARSG-NEITNKNQMI--QWHSLTREEQAKYYEKARQER 118
              +N    F+L   + + K  A     E    NQ++  +WH+L+REEQAKYYE AR+ER
Sbjct: 305 KKPLN---AFMLYMKEMRAKVIAECTLKESAAINQILGRRWHALSREEQAKYYELARKER 361

Query: 119 QLHMELYPGWSARDNYGYGAKKKKRKKER 147
           QLHM+LYPGWSARDNYG   KKK+R +E+
Sbjct: 362 QLHMQLYPGWSARDNYG---KKKRRSREK 387

Transcriptional activator involved in T-cell lymphocyte differentiation. Necessary for the survival of CD4(+) CD8(+) immature thymocytes. Isoforms lacking the N-terminal CTNNB1 binding domain cannot fulfill this role. Binds to the T-lymphocyte-specific enhancer element (5'-WWCAAAG-3') found in the promoter of the CD3E gene. May also act as feedback transcriptional repressor of CTNNB1 and TCF7L2 target genes. TLE1, TLE2, TLE3 and TLE4 repress transactivation mediated by TCF7 and CTNNB1.

Mus musculus (taxid: 10090)

>sp|Q9HCS4|TF7L1_HUMAN Transcription factor 7-like 1 OS=Homo sapiens GN=TCF7L1 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/149 (40%), Positives = 81/149 (54%), Gaps = 22/149 (14%)

Query: 1   MKTSLDYRFSPTSLMAAHPGLSPHS---HPAIVTPGPKQE--------LLSDHNHSGMRW 49
           M + +  RFSP  +  AHPGL P S   HPAIV+P  KQE         +S  +   ++ 
Sbjct: 280 MSSLVSSRFSPHMVAPAHPGL-PTSGIPHPAIVSPIVKQEPAPPSLSPAVSVKSPVTVKK 338

Query: 50  GGMSKPSIMSWHVGSVNFICNFILIGPQGQTKPEARSG-NEITNKNQMI--QWHSLTREE 106
               KP +          +  F+L   + + K  A     E    NQ++  +WH+L+REE
Sbjct: 339 EEEKKPHVK-------KPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRKWHNLSREE 391

Query: 107 QAKYYEKARQERQLHMELYPGWSARDNYG 135
           QAKYYE AR+ERQLH +LYP WSARDNYG
Sbjct: 392 QAKYYELARKERQLHSQLYPTWSARDNYG 420

Participates in the Wnt signaling pathway. Binds to DNA and acts as a repressor in the absence of CTNNB1, and as an activator in its presence. Necessary for the terminal differentiation of epidermal cells, the formation of keratohyalin granules and the development of the barrier function of the epidermis (By similarity). Down-regulates NQO1, leading to increased mitomycin c resistance.

Homo sapiens (taxid: 9606)

>sp|Q9YHE8|T7L1A_DANRE Transcription factor 7-like 1-A OS=Danio rerio GN=tcf7l1a PE=2 SV=1

 Score = 80.9 bits (198), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 84/163 (51%), Gaps = 22/163 (13%)

Query: 1   MKTSLDYRFSPTSLMAAHPGLSPH----SHPAIVTPGPKQELLSDHNHSGMRWGGMSKPS 56
           M + +  RFSP   M  HP    H     HPAIV+P  KQE     N          KPS
Sbjct: 263 MSSLVSSRFSPH--MVPHPPHGLHQTGIPHPAIVSPAIKQEP----NGESPSNSTHGKPS 316

Query: 57  I-------MSWHVGSVNFICNFILIGPQGQTKPEARSG-NEITNKNQMI--QWHSLTREE 106
           +          H+     +  F+L   + + K  A     E    NQ++  +WHSL+REE
Sbjct: 317 VPVKKEEEKKPHIKKP--LNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHSLSREE 374

Query: 107 QAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKERAP 149
           QAKYYE AR+ERQLH +LYPGWSARDNYG   K+K+  K  +P
Sbjct: 375 QAKYYELARKERQLHSQLYPGWSARDNYGKRKKRKRDCKSDSP 417

Participates in the Wnt signaling pathway. Probably binds to DNA and acts as a repressor in the absence of ctnnb1, and possibly as an activator in its presence. Required early in development for dorsal specific gene activation and during gastrulation for repression of dorsal-specific genes in the marginal zone. Required for head formation and forebrain specification. Regulates anterior-posterior patterning in the neuroectoderm by repressing posterior neural fates.

Danio rerio (taxid: 7955)

>sp|Q9NQB0|TF7L2_HUMAN Transcription factor 7-like 2 OS=Homo sapiens GN=TCF7L2 PE=1 SV=2

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/44 (77%), Positives = 41/44 (93%), Gaps = 2/44 (4%)

Query: 94  NQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYG 135
           NQ++  +WH+L+REEQAKYYE AR+ERQLHM+LYPGWSARDNYG
Sbjct: 381 NQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYG 424

Participates in the Wnt signaling pathway and modulates MYC expression by binding to its promoter in a sequence-specific manner. Acts as repressor in the absence of CTNNB1, and as activator in its presence. Activates transcription from promoters with several copies of the Tcf motif 5'-CCTTTGATC-3' in the presence of CTNNB1. TLE1, TLE2, TLE3 and TLE4 repress transactivation mediated by TCF7L2/TCF4 and CTNNB1. Expression of dominant-negative mutants results in cell-cycle arrest in G1. Necessary for the maintenance of the epithelial stem-cell compartment of the small intestine.

Homo sapiens (taxid: 9606)

>sp|Q6GL68|TF7L1_XENTR Transcription factor 7-like 1 OS=Xenopus tropicalis GN=tcf7l1 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/145 (41%), Positives = 80/145 (55%), Gaps = 14/145 (9%)

Query: 1   MKTSLDYRFSPTSLMAAHPGL--SPHSHPAIVTPGPKQELLSDHNHSGMRWGGMSKPSIM 58
           M + +  RFSP  +   H GL  S   HPAIV+P  KQE  S +    +    ++KPS++
Sbjct: 258 MSSLVSSRFSPHMVPPPHHGLHTSGIPHPAIVSPIVKQEPSSGNISPNL----ITKPSVV 313

Query: 59  SWHVGSV-----NFICNFILIGPQGQTKPEARSG-NEITNKNQMI--QWHSLTREEQAKY 110
                         +  F+L   + + K  A     E    NQ++  +WHSL+REEQAKY
Sbjct: 314 VKKEEEKKPHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHSLSREEQAKY 373

Query: 111 YEKARQERQLHMELYPGWSARDNYG 135
           YE AR+ERQLH +LYP WSARDNYG
Sbjct: 374 YELARKERQLHSQLYPTWSARDNYG 398

Participates in the Wnt signaling pathway. Binds to DNA and acts as a repressor in the absence of ctnnb1, and as an activator in its presence. Required early in development for the establishment of the dorsal body axis in response to maternal Wnt signaling.

Xenopus tropicalis (taxid: 8364)

>sp|Q924A0|TF7L2_MOUSE Transcription factor 7-like 2 OS=Mus musculus GN=Tcf7l2 PE=1 SV=2

 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/44 (77%), Positives = 41/44 (93%), Gaps = 2/44 (4%)

Query: 94  NQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYG 135
           NQ++  +WH+L+REEQAKYYE AR+ERQLHM+LYPGWSARDNYG
Sbjct: 358 NQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYG 401

Participates in the Wnt signaling pathway and modulates MYC expression by binding to its promoter in a sequence-specific manner. Acts as repressor in the absence of CTNNB1, and as activator in its presence. Activates transcription from promoters with several copies of the Tcf motif CCTTTGATC in the presence of CTNNB1. TLE1, TLE2, TLE3 and TLE4 repress transactivation mediated by TCF7L2/TCF4 and CTNNB1. Expression of dominant-negative mutants results in cell-cycle arrest in G1 (By similarity). Necessary for the maintenance of the epithelial stem-cell compartment of the small intestine.

Mus musculus (taxid: 10090)

>sp|Q9QXN1|LEF1_RAT Lymphoid enhancer-binding factor 1 OS=Rattus norvegicus GN=Lef1 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/44 (77%), Positives = 41/44 (93%), Gaps = 2/44 (4%)

Query: 94  NQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYG 135
           NQ++  +WH+L+REEQAKYYE AR+ERQLHM+LYPGWSARDNYG
Sbjct: 328 NQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYG 371

Participates in the Wnt signaling pathway. Activates transcription of target genes in the presence of CTNNB1 and EP300. May play a role in hair cell differentiation and follicle morphogenesis. TLE1, TLE2, TLE3 and TLE4 repress transactivation mediated by LEF1 and CTNNB1. Regulates T-cell receptor alpha enhancer function. Binds DNA in a sequence-specific manner. PIASG antagonizes both Wnt-dependent and Wnt-independent activation by LEF1.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
328724246	599	PREDICTED: protein pangolin, isoforms A/	0.875	0.257	0.488	5e-23
242010142	214	T-cell specific transcription factor, tc	0.778	0.640	0.473	9e-21
158300168	490	AGAP012389-PA [Anopheles gambiae str. PE	0.778	0.279	0.444	6e-20
40215913	521	HL03718p [Drosophila melanogaster]	0.284	0.095	0.788	1e-17
443720229	218	hypothetical protein CAPTEDRAFT_103591,	0.727	0.587	0.421	1e-17
270004392	584	hypothetical protein TcasGA2_TC003728 [T	0.318	0.095	0.844	4e-17
338227711	102	pangolin isoform A [Onthophagus binodis]	0.357	0.617	0.761	4e-17
194768264	741	GF19332 [Drosophila ananassae] gi|190623	0.835	0.198	0.410	5e-17
357620172	499	hypothetical protein KGM_00141 [Danaus p	0.318	0.112	0.827	7e-17
195402146	769	GJ21981 [Drosophila virilis] gi|19415588	0.869	0.198	0.405	1e-16

>gi|328724246|ref|XP_001943539.2| PREDICTED: protein pangolin, isoforms A/H/I-like isoform 1 [Acyrthosiphon pisum]

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/178 (48%), Positives = 101/178 (56%), Gaps = 24/178 (13%)

Query: 3   TSLDYRFSPTSLMAAHPGLSPHSHP------AIVTPGPKQELLSDHNHSGMR-WGGMSKP 55
           TS  YRFSPT LM+        SH       AIVTPG +Q+L +D NH         S  
Sbjct: 225 TSELYRFSPTGLMSGPSPHHHLSHHTHHSHPAIVTPGVRQDLHTDSNHRPQNDHSKNSSC 284

Query: 56  SIMSWHVGSVNFICN--------------FILIGPQGQTKPEARSG-NEITNKNQMI--Q 98
           S  S H  +V    N              F+L   + + K  A     E    NQ++  +
Sbjct: 285 SDGSKHHDTVQNSNNQDKKKPHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRR 344

Query: 99  WHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKERAPIIDTNGG 156
           WHSL+R+EQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKER P+ID   G
Sbjct: 345 WHSLSRDEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKERVPVIDAGSG 402

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010142|ref|XP_002425835.1| T-cell specific transcription factor, tcf, putative [Pediculus humanus corporis] gi|212509768|gb|EEB13097.1| T-cell specific transcription factor, tcf, putative [Pediculus humanus corporis]

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/152 (47%), Positives = 87/152 (57%), Gaps = 15/152 (9%)

Query: 9   FSPTSLMAAHPGLSPH------SHPAIVTPGPKQEL----LSDHNHSGMRWGGMSKPSIM 58
            S T+L+  HPGLSPH      SHPAIVTPGPKQEL     SDHNH           S  
Sbjct: 20  ISSTTLLPGHPGLSPHGHHSLSSHPAIVTPGPKQELGHHTQSDHNHRIRDSKSQDASSQN 79

Query: 59  SWHVGSVNFICN-FILIGPQGQTKPEARSG-NEITNKNQMI--QWHSLTREEQAKYYEKA 114
                 +    N F+L   + + K  A     E    NQ++  +WH+L REEQAKYYE A
Sbjct: 80  DKKKPHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALGREEQAKYYELA 139

Query: 115 RQERQLHMELYPGWSARDNYGYGAKKKKRKKE 146
           R+ERQLHM+LYP WS+R N   G KK+KRK+E
Sbjct: 140 RRERQLHMQLYPDWSSRANSSRG-KKRKRKQE 170

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158300168|ref|XP_320170.4| AGAP012389-PA [Anopheles gambiae str. PEST] gi|157013027|gb|EAA00026.4| AGAP012389-PA [Anopheles gambiae str. PEST]

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/171 (44%), Positives = 98/171 (57%), Gaps = 34/171 (19%)

Query: 7   YRFSPT----SLMAAHPGLSPHSHPAIVTPGPKQELLSD-------------------HN 43
           YR+SPT    S+  +HP L+   HPAI+TPGPKQ++                      H 
Sbjct: 197 YRYSPTLLPPSIHPSHPVLN-SGHPAIITPGPKQDISGSGGSSHRGGDRQGAGGGGGGHK 255

Query: 44  HSGM--RWGGMSKPSIMSWHVGSVNFICNFILIGPQGQTKPEARSG-NEITNKNQMI--Q 98
           H  +  R   + K      HV     +  F+L   + + K  A     E    NQ++  +
Sbjct: 256 HQSLAEREAALEK---KRSHVKKP--LNAFMLYMKEMRAKVVAECTLKESAAINQILGRK 310

Query: 99  WHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKERAP 149
           WHSL+REEQ+ YY+KARQERQLHMELYPGW+ARDNYGYGAKKKKRKK+R+P
Sbjct: 311 WHSLSREEQSVYYDKARQERQLHMELYPGWTARDNYGYGAKKKKRKKDRSP 361

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|40215913|gb|AAR82799.1| HL03718p [Drosophila melanogaster]

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/52 (78%), Positives = 48/52 (92%), Gaps = 2/52 (3%)

Query: 94  NQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKR 143
           NQ++  +WH L+REEQ+KYYEKARQERQLHMELYPGWSARDNYGY +KKKK+
Sbjct: 470 NQILGRRWHELSREEQSKYYEKARQERQLHMELYPGWSARDNYGYVSKKKKK 521

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443720229|gb|ELU10028.1| hypothetical protein CAPTEDRAFT_103591, partial [Capitella teleta]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 87/159 (54%), Gaps = 31/159 (19%)

Query: 8   RFSPTSLMA---AHPGLSPHSHPAIVTPGPKQELLSDHNHSGMRWGGMS----------- 53
           RFSPT L+    +HP L    HPAIVTPGPKQEL S H   G   GG S           
Sbjct: 30  RFSPTGLLPHHMSHPCLP---HPAIVTPGPKQEL-SLHAGGG---GGASENHRLVIFSHP 82

Query: 54  ---KPSIMSWHVGSVNFICNFILIGPQGQTKPEARSGNEITNKNQMI--QWHSLTREEQA 108
              +P  +   + +       + +    QT  E  +  E    NQ++  +WH+L R EQA
Sbjct: 83  EQKRPPKIKKPLNAF-----MLFMKEMRQTVIEECTLKESAAINQILGRRWHALDRSEQA 137

Query: 109 KYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKER 147
           KYYE AR+E++LHM+LYPGWSARDNY    KK  +K++R
Sbjct: 138 KYYEMARKEKELHMQLYPGWSARDNYATHNKKALKKRKR 176

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|270004392|gb|EFA00840.1| hypothetical protein TcasGA2_TC003728 [Tribolium castaneum]

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/58 (84%), Positives = 54/58 (93%), Gaps = 2/58 (3%)

Query: 94  NQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKERAP 149
           NQ++  +WHSL+REEQAKYYEKARQERQLHM+LYPGWSARDNYGYG KKKKRKKER P
Sbjct: 252 NQILGRRWHSLSREEQAKYYEKARQERQLHMQLYPGWSARDNYGYGTKKKKRKKERTP 309

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|338227711|gb|AEI91051.1| pangolin isoform A [Onthophagus binodis]

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/67 (76%), Positives = 59/67 (88%), Gaps = 4/67 (5%)

Query: 94  NQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKERAPII 151
           NQ++  +WHSL+REEQAKYYEKARQERQLHM+LYPGWSARDNYGYG KKKKRKKER P+ 
Sbjct: 26  NQILGRKWHSLSREEQAKYYEKARQERQLHMQLYPGWSARDNYGYGTKKKKRKKERTPV- 84

Query: 152 DTNGGTT 158
             +GG +
Sbjct: 85  -ESGGNS 90

Source: Onthophagus binodis

Species: Onthophagus binodis

Genus: Onthophagus

Family: Scarabaeidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194768264|ref|XP_001966233.1| GF19332 [Drosophila ananassae] gi|190623118|gb|EDV38642.1| GF19332 [Drosophila ananassae]

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/168 (41%), Positives = 92/168 (54%), Gaps = 21/168 (12%)

Query: 1   MKTSLDYRFSPTSLMAAHPGLSPH---SHPAIVTPGPKQELLSDHNHSGMRWG-GMSKPS 56
           + +   +RFSP+ L + H   S H   SHPAI+    KQ+  +    +  R+   +   +
Sbjct: 195 LSSDFPFRFSPSLLPSVH-ATSHHVLNSHPAIMGASSKQDNGAQETATNSRYSRNLETKN 253

Query: 57  IMSWHVGSVNFICN-------------FILIGPQGQTKPEARSG-NEITNKNQMI--QWH 100
             S        I N             F+L   + + K  A     E    NQ++  +WH
Sbjct: 254 TSSIQTNDTKDISNDKKKPHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWH 313

Query: 101 SLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKERA 148
            L+REEQ+KYYEKARQERQLHMELYPGWSARDNYGY +KKKKRKK+R+
Sbjct: 314 ELSREEQSKYYEKARQERQLHMELYPGWSARDNYGYVSKKKKRKKDRS 361

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357620172|gb|EHJ72465.1| hypothetical protein KGM_00141 [Danaus plexippus]

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/58 (82%), Positives = 55/58 (94%), Gaps = 2/58 (3%)

Query: 94  NQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKERAP 149
           NQ++  +WHSL+REEQAKYYEKARQERQLHM+LYPGWSARDNYGYG+KKKKRKK+R P
Sbjct: 200 NQILGRRWHSLSREEQAKYYEKARQERQLHMQLYPGWSARDNYGYGSKKKKRKKDRGP 257

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195402146|ref|XP_002059670.1| GJ21981 [Drosophila virilis] gi|194155884|gb|EDW71068.1| GJ21981 [Drosophila virilis]

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/175 (40%), Positives = 95/175 (54%), Gaps = 22/175 (12%)

Query: 1   MKTSLDYRFSPTSLMAAHPGLSPH---SHPAIVTPGPKQELLSDHNHSGMRWG-GMSKPS 56
           + +   +RFSP+ L + H   S H   SHP+IVT   KQ+     + +  R+   +   S
Sbjct: 196 LPSDFPFRFSPSLLPSVH-ATSHHVLNSHPSIVTSNSKQDCGVQDSTTNNRYSRNLDTKS 254

Query: 57  IMSWHVGSVNFICN-------------FILIGPQGQTKPEARSG-NEITNKNQMI--QWH 100
             +          N             F+L   + + K  A     E    NQ++  +WH
Sbjct: 255 SSNSQANDCKDSSNDKKKPHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWH 314

Query: 101 SLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKERAPIIDTNG 155
            L+REEQ+KYYEKARQERQLHMELYPGWSARDNYGY +KKKKRKK+R+   D+ G
Sbjct: 315 ELSREEQSKYYEKARQERQLHMELYPGWSARDNYGYVSKKKKRKKDRS-TADSGG 368

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
UNIPROTKB|F1NEB2	339	TCF7L2 "Uncharacterized protei	0.75	0.389	0.426	1.9e-18
UNIPROTKB|E2GH20	335	TCF7L2 "T-cell factor-4 varian	0.75	0.394	0.426	3e-18
UNIPROTKB|D4A3R7	435	683733 "Protein 683733" [Rattu	0.744	0.301	0.436	6.8e-18
RGD|1583621	459	Tcf7l2 "transcription factor 7	0.710	0.272	0.448	8.1e-18
UNIPROTKB|H0YAR8	147	TCF7 "Transcription factor 7"	0.642	0.768	0.459	9.5e-18
UNIPROTKB|H0YBC8	204	TCF7 "Transcription factor 7"	0.642	0.553	0.459	9.5e-18
UNIPROTKB|Q5JRY4	176	TCF7L2 "Transcription factor 7	0.710	0.710	0.433	1.2e-17
UNIPROTKB|Q5JRY5	207	TCF7L2 "Transcription factor 7	0.710	0.603	0.433	1.2e-17
UNIPROTKB|E2RRW8	418	TCF7 "Uncharacterized protein"	0.704	0.296	0.441	1.3e-17
UNIPROTKB|D4A8X6	598	683733 "Protein 683733" [Rattu	0.710	0.209	0.448	1.5e-17

UNIPROTKB|F1NEB2 TCF7L2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 223 (83.6 bits), Expect = 1.9e-18, P = 1.9e-18
 Identities = 61/143 (42%), Positives = 77/143 (53%)

Query:     1 MKTSLDYRFSPTSLMAAHPGLSPHS--HPAIVTPGPKQELL-SDHN--HSGMRWGGMSKP 55
             M + L  RF P  ++  H  L      HPAIVTP  KQE   SD    HS        + 
Sbjct:    39 MSSFLSSRFPP-HMVPPHHSLHTTGIPHPAIVTPTVKQESSQSDVGSLHSSKHQDSKKEE 97

Query:    56 SIMSWHVGSVNFICNFILIGPQGQTKPEARSG-NEITNKNQMI--QWHSLTREEQAKYYE 112
                  H+     +  F+L   + + K  A     E    NQ++  +WH+L+REEQAKYYE
Sbjct:    98 EKKKPHIKKP--LNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYE 155

Query:   113 KARQERQLHMELYPGWSARDNYG 135
              AR+ERQLHM+LYPGWSARDNYG
Sbjct:   156 LARKERQLHMQLYPGWSARDNYG 178

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

UNIPROTKB|E2GH20 TCF7L2 "T-cell factor-4 variant X2" [Homo sapiens (taxid:9606)]

 Score = 221 (82.9 bits), Expect = 3.0e-18, P = 3.0e-18
 Identities = 61/143 (42%), Positives = 77/143 (53%)

Query:     1 MKTSLDYRFSPTSLMAAHPGLSPHS--HPAIVTPGPKQELL-SDHN--HSGMRWGGMSKP 55
             M + L  RF P  ++  H  L      HPAIVTP  KQE   SD    HS        + 
Sbjct:     1 MSSFLSSRFPP-HMVPPHHTLHTTGIPHPAIVTPTVKQESSQSDVGSLHSSKHQDSKKEE 59

Query:    56 SIMSWHVGSVNFICNFILIGPQGQTKPEARSG-NEITNKNQMI--QWHSLTREEQAKYYE 112
                  H+     +  F+L   + + K  A     E    NQ++  +WH+L+REEQAKYYE
Sbjct:    60 EKKKPHIKKP--LNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYE 117

Query:   113 KARQERQLHMELYPGWSARDNYG 135
              AR+ERQLHM+LYPGWSARDNYG
Sbjct:   118 LARKERQLHMQLYPGWSARDNYG 140

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

UNIPROTKB|D4A3R7 683733 "Protein 683733" [Rattus norvegicus (taxid:10116)]

 Score = 223 (83.6 bits), Expect = 6.8e-18, P = 6.8e-18
 Identities = 62/142 (43%), Positives = 78/142 (54%)

Query:     1 MKTSLDYRFSPTSLMAAHPGLSPHS--HPAIVTPGPKQELL-SDHN--HSGMRWGGMSKP 55
             M + L  RF P  ++  H  L      HPAIVTP  KQE   SD    HS  R  G  + 
Sbjct:   286 MSSFLSSRFPP-HMVPPHHTLHTTGIPHPAIVTPTVKQESSQSDVGSLHSSKRLFGTREE 344

Query:    56 SIMSWHVGSVNFICNFILIGPQGQTKPEARSG-NEITNKNQMI--QWHSLTREEQAKYYE 112
                  H+     +  F+L   + + K  A     E    NQ++  +WH+L+REEQAKYYE
Sbjct:   345 EKKKPHIKKP--LNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYE 402

Query:   113 KARQERQLHMELYPGWSARDNY 134
              AR+ERQLHM+LYPGWSARDNY
Sbjct:   403 LARKERQLHMQLYPGWSARDNY 424

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

RGD|1583621 Tcf7l2 "transcription factor 7-like 2 (T-cell specific, HMG-box)" [Rattus norvegicus (taxid:10116)]

 Score = 223 (83.6 bits), Expect = 8.1e-18, P = 8.1e-18
 Identities = 61/136 (44%), Positives = 76/136 (55%)

Query:     8 RFSPTSLMAAHPGLSPHS--HPAIVTPGPKQELL-SDHN--HSGMRWGGMSKPSIMSWHV 62
             RF P  ++  H  L      HPAIVTP  KQE   SD    HS  R  G  +      H+
Sbjct:   269 RFPP-HMVPPHHTLHTTGIPHPAIVTPTVKQESSQSDVGSLHSSKRLFGTREEEKKKPHI 327

Query:    63 GSVNFICNFILIGPQGQTKPEARSG-NEITNKNQMI--QWHSLTREEQAKYYEKARQERQ 119
                  +  F+L   + + K  A     E    NQ++  +WH+L+REEQAKYYE AR+ERQ
Sbjct:   328 KKP--LNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQ 385

Query:   120 LHMELYPGWSARDNYG 135
             LHM+LYPGWSARDNYG
Sbjct:   386 LHMQLYPGWSARDNYG 401

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000790 "nuclear chromatin" evidence=ISO

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=ISO

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=ISO

GO:0001568 "blood vessel development" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003682 "chromatin binding" evidence=ISO;IBA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO;IBA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005654 "nucleoplasm" evidence=ISO

GO:0005667 "transcription factor complex" evidence=ISO;IBA

GO:0005829 "cytosol" evidence=ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO;IBA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO;IBA

GO:0007050 "cell cycle arrest" evidence=ISO

GO:0007420 "brain development" evidence=IBA

GO:0008013 "beta-catenin binding" evidence=ISO;IBA

GO:0008134 "transcription factor binding" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0008283 "cell proliferation" evidence=ISO

GO:0009749 "response to glucose stimulus" evidence=ISO

GO:0010909 "positive regulation of heparan sulfate proteoglycan biosynthetic process" evidence=ISO

GO:0014003 "oligodendrocyte development" evidence=ISO

GO:0016055 "Wnt receptor signaling pathway" evidence=ISO;IBA

GO:0019901 "protein kinase binding" evidence=ISO

GO:0021915 "neural tube development" evidence=ISO

GO:0021983 "pituitary gland development" evidence=ISO

GO:0022008 "neurogenesis" evidence=IBA

GO:0030282 "bone mineralization" evidence=ISO

GO:0030514 "negative regulation of BMP signaling pathway" evidence=ISO

GO:0030538 "embryonic genitalia morphogenesis" evidence=ISO

GO:0031641 "regulation of myelination" evidence=ISO

GO:0032024 "positive regulation of insulin secretion" evidence=ISO

GO:0032092 "positive regulation of protein binding" evidence=ISO

GO:0032252 "secretory granule localization" evidence=ISO

GO:0032350 "regulation of hormone metabolic process" evidence=ISO

GO:0032993 "protein-DNA complex" evidence=ISO

GO:0035019 "somatic stem cell maintenance" evidence=ISO

GO:0035257 "nuclear hormone receptor binding" evidence=ISO

GO:0035411 "catenin import into nucleus" evidence=ISO

GO:0040037 "negative regulation of fibroblast growth factor receptor signaling pathway" evidence=ISO

GO:0042475 "odontogenesis of dentin-containing tooth" evidence=ISO

GO:0042593 "glucose homeostasis" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0043565 "sequence-specific DNA binding" evidence=ISO;IBA

GO:0043570 "maintenance of DNA repeat elements" evidence=ISO

GO:0043588 "skin development" evidence=ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO;IBA

GO:0044334 "canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition" evidence=ISO

GO:0045295 "gamma-catenin binding" evidence=ISO

GO:0045444 "fat cell differentiation" evidence=ISO

GO:0045599 "negative regulation of fat cell differentiation" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0046621 "negative regulation of organ growth" evidence=ISO

GO:0046827 "positive regulation of protein export from nucleus" evidence=ISO

GO:0048557 "embryonic digestive tract morphogenesis" evidence=ISO

GO:0048619 "embryonic hindgut morphogenesis" evidence=ISO

GO:0048625 "myoblast cell fate commitment" evidence=ISO

GO:0048641 "regulation of skeletal muscle tissue development" evidence=ISO

GO:0048660 "regulation of smooth muscle cell proliferation" evidence=ISO

GO:0048699 "generation of neurons" evidence=IBA

GO:0048713 "regulation of oligodendrocyte differentiation" evidence=ISO

GO:0050679 "positive regulation of epithelial cell proliferation" evidence=ISO

GO:0051897 "positive regulation of protein kinase B signaling cascade" evidence=ISO

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=ISO;IBA

GO:0060325 "face morphogenesis" evidence=ISO

GO:0061178 "regulation of insulin secretion involved in cellular response to glucose stimulus" evidence=ISO;IMP

GO:0070016 "armadillo repeat domain binding" evidence=ISO

GO:0070369 "beta-catenin-TCF7L2 complex" evidence=ISO

GO:0071664 "catenin-TCF7L2 complex" evidence=ISO

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISO

UNIPROTKB|H0YAR8 TCF7 "Transcription factor 7" [Homo sapiens (taxid:9606)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 56/122 (45%), Positives = 68/122 (55%)

Query:    18 HPGLSPHSHPAIVTPGPKQELLS-DHNHSGMRWGGMSKPSIMSWHVGSVNFICNFILIGP 76
             HP   PH  PAIV P  KQEL   D N          K +        +N    F+L   
Sbjct:     5 HPAAIPH--PAIVPPSGKQELQPFDRNLKTQAESKAEKEAKKPTIKKPLNA---FMLYMK 59

Query:    77 QGQTKPEARSG-NEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDN 133
             + + K  A     E    NQ++  +WH+L+REEQAKYYE AR+ERQLHM+LYPGWSARDN
Sbjct:    60 EMRAKVIAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDN 119

Query:   134 YG 135
             YG
Sbjct:   120 YG 121

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

UNIPROTKB|H0YBC8 TCF7 "Transcription factor 7" [Homo sapiens (taxid:9606)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 56/122 (45%), Positives = 68/122 (55%)

Query:    18 HPGLSPHSHPAIVTPGPKQELLS-DHNHSGMRWGGMSKPSIMSWHVGSVNFICNFILIGP 76
             HP   PH  PAIV P  KQEL   D N          K +        +N    F+L   
Sbjct:    16 HPAAIPH--PAIVPPSGKQELQPFDRNLKTQAESKAEKEAKKPTIKKPLNA---FMLYMK 70

Query:    77 QGQTKPEARSG-NEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDN 133
             + + K  A     E    NQ++  +WH+L+REEQAKYYE AR+ERQLHM+LYPGWSARDN
Sbjct:    71 EMRAKVIAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDN 130

Query:   134 YG 135
             YG
Sbjct:   131 YG 132

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

UNIPROTKB|Q5JRY4 TCF7L2 "Transcription factor 7-like 2" [Homo sapiens (taxid:9606)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 59/136 (43%), Positives = 74/136 (54%)

Query:     8 RFSPTSLMAAHPGLSPHS--HPAIVTPGPKQELL-SDHN--HSGMRWGGMSKPSIMSWHV 62
             RF P  ++  H  L      HPAIVTP  KQE   SD    HS        +      H+
Sbjct:     3 RFPP-HMVPPHHTLHTTGIPHPAIVTPTVKQESSQSDVGSLHSSKHQDSKKEEEKKKPHI 61

Query:    63 GSVNFICNFILIGPQGQTKPEARSG-NEITNKNQMI--QWHSLTREEQAKYYEKARQERQ 119
                  +  F+L   + + K  A     E    NQ++  +WH+L+REEQAKYYE AR+ERQ
Sbjct:    62 KKP--LNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQ 119

Query:   120 LHMELYPGWSARDNYG 135
             LHM+LYPGWSARDNYG
Sbjct:   120 LHMQLYPGWSARDNYG 135

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

UNIPROTKB|Q5JRY5 TCF7L2 "Transcription factor 7-like 2" [Homo sapiens (taxid:9606)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 59/136 (43%), Positives = 74/136 (54%)

Query:     8 RFSPTSLMAAHPGLSPHS--HPAIVTPGPKQELL-SDHN--HSGMRWGGMSKPSIMSWHV 62
             RF P  ++  H  L      HPAIVTP  KQE   SD    HS        +      H+
Sbjct:     9 RFPP-HMVPPHHTLHTTGIPHPAIVTPTVKQESSQSDVGSLHSSKHQDSKKEEEKKKPHI 67

Query:    63 GSVNFICNFILIGPQGQTKPEARSG-NEITNKNQMI--QWHSLTREEQAKYYEKARQERQ 119
                  +  F+L   + + K  A     E    NQ++  +WH+L+REEQAKYYE AR+ERQ
Sbjct:    68 KKP--LNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQ 125

Query:   120 LHMELYPGWSARDNYG 135
             LHM+LYPGWSARDNYG
Sbjct:   126 LHMQLYPGWSARDNYG 141

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

UNIPROTKB|E2RRW8 TCF7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 220 (82.5 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 60/136 (44%), Positives = 77/136 (56%)

Query:     8 RFSPTSLMAA-----HPGLSPHSHPAIVTPGPKQELLSDHNHSGMRWGGMSKPSIMSWHV 62
             RF+  SLM       HP   PH  PAIV P  KQEL   ++ S ++    SK    +   
Sbjct:   246 RFTHPSLMLGSGVPGHPAAIPH--PAIVPPSGKQEL-QPYDRS-LKTQAESKVEKEAKKP 301

Query:    63 GSVNFICNFILIGPQGQTKPEARSG-NEITNKNQMI--QWHSLTREEQAKYYEKARQERQ 119
                  +  F+L   + + K  A     E    NQ++  +WH+L+REEQAKYYE AR+ERQ
Sbjct:   302 TIKKPLNAFMLYMKEMRAKVIAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQ 361

Query:   120 LHMELYPGWSARDNYG 135
             LHM+LYPGWSARDNYG
Sbjct:   362 LHMQLYPGWSARDNYG 377

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

UNIPROTKB|D4A8X6 683733 "Protein 683733" [Rattus norvegicus (taxid:10116)]

 Score = 223 (83.6 bits), Expect = 1.5e-17, P = 1.5e-17
 Identities = 61/136 (44%), Positives = 76/136 (55%)

Query:     8 RFSPTSLMAAHPGLSPHS--HPAIVTPGPKQELL-SDHN--HSGMRWGGMSKPSIMSWHV 62
             RF P  ++  H  L      HPAIVTP  KQE   SD    HS  R  G  +      H+
Sbjct:   269 RFPP-HMVPPHHTLHTTGIPHPAIVTPTVKQESSQSDVGSLHSSKRLFGTREEEKKKPHI 327

Query:    63 GSVNFICNFILIGPQGQTKPEARSG-NEITNKNQMI--QWHSLTREEQAKYYEKARQERQ 119
                  +  F+L   + + K  A     E    NQ++  +WH+L+REEQAKYYE AR+ERQ
Sbjct:   328 KKP--LNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQ 385

Query:   120 LHMELYPGWSARDNYG 135
             LHM+LYPGWSARDNYG
Sbjct:   386 LHMQLYPGWSARDNYG 401

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	176
cd01388	72	cd01388, SOX-TCF_HMG-box, SOX-TCF_HMG-box, class I	5e-12
pfam00505	69	pfam00505, HMG_box, HMG (high mobility group) box	8e-06
cd00084	66	cd00084, HMG-box, High Mobility Group (HMG)-box is	9e-05
smart00398	70	smart00398, HMG, high mobility group	2e-04

>gnl|CDD|238684 cd01388, SOX-TCF_HMG-box, SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins

 Score = 58.1 bits (141), Expect = 5e-12
 Identities = 15/34 (44%), Positives = 26/34 (76%)

Query: 98  QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR 131
           +W +L+ EE+  YYE+A++ ++LHM+LYP +  R
Sbjct: 39  RWKALSNEEKQPYYEEAKKLKELHMKLYPDYKWR 72

These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif. Length = 72

>gnl|CDD|189580 pfam00505, HMG_box, HMG (high mobility group) box

 Score = 41.4 bits (98), Expect = 8e-06
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 99  WHSLTREEQAKYYEKARQERQLHMELYPGWS 129
           W +L+ EE+  Y EKA +E+  + + YP + 
Sbjct: 39  WKNLSEEEKKPYEEKAEKEKARYEKAYPAYK 69

Length = 69

>gnl|CDD|238037 cd00084, HMG-box, High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors

 Score = 38.8 bits (91), Expect = 9e-05
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 98  QWHSLTREEQAKYYEKARQERQLHMELYP 126
            W SL+ EE+ KY EKA ++++ + +  P
Sbjct: 38  MWKSLSEEEKKKYEEKAEKDKERYEKEMP 66

HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions. Length = 66

>gnl|CDD|197700 smart00398, HMG, high mobility group

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 12/37 (32%), Positives = 23/37 (62%)

Query: 92  NKNQMIQWHSLTREEQAKYYEKARQERQLHMELYPGW 128
           +K    +W  L+ EE+A Y EKA+++++ + E  P +
Sbjct: 33  SKKLGERWKLLSEEEKAPYEEKAKKDKERYEEEMPEY 69

Length = 70

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
KOG3248|consensus	421		100.0
KOG0527|consensus	331		99.93
cd01389	77	MATA_HMG-box MATA_HMG-box, class I member of the H	99.89
cd01388	72	SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of	99.87
PF00505	69	HMG_box: HMG (high mobility group) box; InterPro:	99.73
PTZ00199	94	high mobility group protein; Provisional	99.72
smart00398	70	HMG high mobility group.	99.71
cd01390	66	HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and II	99.68
KOG0528|consensus	511		99.68
cd00084	66	HMG-box High Mobility Group (HMG)-box is found in	99.65
PF09011	73	HMG_box_2: HMG-box domain; InterPro: IPR015101 Thi	99.54
KOG0381|consensus	96		99.47
COG5648	211	NHP6B Chromatin-associated proteins containing the	99.43
KOG0526|consensus	615		99.06
KOG2746|consensus	683		98.8
KOG4715|consensus	410		98.63
COG5648	211	NHP6B Chromatin-associated proteins containing the	96.11
PF06382	183	DUF1074: Protein of unknown function (DUF1074); In	94.66
PF04769	201	MAT_Alpha1: Mating-type protein MAT alpha 1; Inter	94.28
PF14887	85	HMG_box_5: HMG (high mobility group) box 5; PDB: 1	93.57

>KOG3248|consensus

Probab=100.00  E-value=1.1e-40  Score=293.90  Aligned_cols=138  Identities=47%  Similarity=0.663  Sum_probs=125.1

Q ss_pred             CCCCCCCCCCCCCC--CCCCCCCCcccCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCchhhhhhhhhccchh
Q psy5036           6 DYRFSPTSLMAAHP--GLSPHSHPAIVTPGPKQELLSDHNHSGMRWGGMSKPSIMSWHVGSVNFICNFILIGPQGQTKPE   83 (176)
Q Consensus         6 ~~rfs~~~~~~~~~--~~s~~~hpaiv~p~~~qe~~~~~~~~~~~~~~~~~~~~~~k~~~~KRPlNAFmLF~ke~R~kv~   83 (176)
                      ++||+||++.++|+  |++||||||||+|.++||.+....  .++.+...+.+.+.|++|||+||||||||++|+|++|+
T Consensus       134 msrf~ph~~~p~~p~~~tagiPhpaiv~P~~kqes~~~~~--nvk~~~~~k~e~e~KkphiKKPLNAFmlyMKEmRa~vv  211 (421)
T KOG3248|consen  134 MSRFSPHHVEPGHPGLHTAGIPHPAIVTPPVKQESDSAPQ--NVKRQAESKKEEEAKKPHIKKPLNAFMLYMKEMRAKVV  211 (421)
T ss_pred             hhhcchhccCCCCCCccccCCCCccccCCcccCccccccc--ccchhhhccccccccCccccccHHHHHHHHHHHHHHHH
Confidence            46999999999887  999999999999999999765433  33444446667778999999999999999999999999


Q ss_pred             hc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCCCCcccccccccccC
Q psy5036          84 AR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKERA  148 (176)
Q Consensus        84 ~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~~~~~kkkkrk~~~~  148 (176)
                      +| ..++.++|++||  +|++||.||+++|+++|+++||.|+++||+|.+|+||+   |||||++|++
T Consensus       212 aEctlKeSAaiNqiLGrRWH~LSrEEQAKYyElArKerqlH~qlYP~WSARdNYg---KKkKrkReKq  276 (421)
T KOG3248|consen  212 AECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYG---KKKKRKREKQ  276 (421)
T ss_pred             HHhhhhhHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhh---hhhhhhhhcc
Confidence            99 999999999999  99999999999999999999999999999999999999   8899999984

>KOG0527|consensus

Probab=99.93  E-value=3.7e-26  Score=202.25  Aligned_cols=79  Identities=16%  Similarity=0.259  Sum_probs=75.6

Q ss_pred             CCCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCC
Q psy5036          58 MSWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNY  134 (176)
Q Consensus        58 ~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~  134 (176)
                      ....+||||||||||||++.+|++|..+ |+++|+||||+|  +|+.|+++||.+|+++|+++|++|+++||||||||++
T Consensus        57 k~~~~hIKRPMNAFMVWSq~~RRkma~qnP~mHNSEISK~LG~~WK~Lse~EKrPFi~EAeRLR~~HmkehPdYKYRPRR  136 (331)
T KOG0527|consen   57 KTSTDRIKRPMNAFMVWSQGQRRKLAKQNPKMHNSEISKRLGAEWKLLSEEEKRPFVDEAERLRAQHMKEYPDYKYRPRR  136 (331)
T ss_pred             CCCccccCCCcchhhhhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhcCHhhhccHHHHHHHHHHHHHHhCCCccccccc
Confidence            4567899999999999999999999999 999999999999  9999999999999999999999999999999999988


Q ss_pred             CC
Q psy5036         135 GY  136 (176)
Q Consensus       135 ~~  136 (176)
                      ++
T Consensus       137 Kk  138 (331)
T KOG0527|consen  137 KK  138 (331)
T ss_pred             cc
Confidence            73

>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins

Probab=99.89  E-value=7e-24  Score=150.11  Aligned_cols=72  Identities=22%  Similarity=0.303  Sum_probs=69.8

Q ss_pred             CCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCC
Q psy5036          63 GSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNY  134 (176)
Q Consensus        63 ~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~  134 (176)
                      |||||+||||||+++.|..|.++ |+++++||+++|  +|+.|+++||++|.++|++++++|+++||+|+|+|..
T Consensus         1 ~~kRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~~g~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~p~~   75 (77)
T cd01389           1 KIPRPRNAFILYRQDKHAQLKTENPGLTNNEISRIIGRMWRSESPEVKAYYKELAEEEKERHAREYPDYKYTPRK   75 (77)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCCCCcccCCC
Confidence            68999999999999999999999 999999999999  9999999999999999999999999999999999854

These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.

>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins

Probab=99.87  E-value=5.4e-23  Score=144.09  Aligned_cols=69  Identities=28%  Similarity=0.528  Sum_probs=67.5

Q ss_pred             CCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC
Q psy5036          63 GSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR  131 (176)
Q Consensus        63 ~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~  131 (176)
                      |||||+||||||++++|.+|..+ |++++.||+++|  +|+.|+++||++|.++|++++++|.++||+|+|+
T Consensus         1 ~iKrP~naf~~F~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~p~y~y~   72 (72)
T cd01388           1 HIKRPMNAFMLFSKRHRRKVLQEYPLKENRAISKILGDRWKALSNEEKQPYYEEAKKLKELHMKLYPDYKWR   72 (72)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence            69999999999999999999999 999999999999  9999999999999999999999999999999985

These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.

>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin

Probab=99.73  E-value=4.4e-19  Score=121.20  Aligned_cols=66  Identities=20%  Similarity=0.335  Sum_probs=62.1

Q ss_pred             CCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCc
Q psy5036          64 SVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWS  129 (176)
Q Consensus        64 ~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk  129 (176)
                      ||||+||||||++++|..+..+ |+++.++|+++|  +|++|+++||++|.++|+++++.|.+++++|+
T Consensus         1 PkrP~~af~lf~~~~~~~~k~~~p~~~~~~i~~~~~~~W~~l~~~eK~~y~~~a~~~~~~y~~~~~~y~   69 (69)
T PF00505_consen    1 PKRPPNAFMLFCKEKRAKLKEENPDLSNKEISKILAQMWKNLSEEEKAPYKEEAEEEKERYEKEMPEYK   69 (69)
T ss_dssp             SSSS--HHHHHHHHHHHHHHHHSTTSTHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHHHHHHHhcccccccchhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999 999999999999  99999999999999999999999999999884

HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....

>PTZ00199 high mobility group protein; Provisional

Probab=99.72  E-value=2.2e-18  Score=127.42  Aligned_cols=73  Identities=14%  Similarity=0.242  Sum_probs=67.8

Q ss_pred             CCCCCCCCCCCCchhhhhhhhhccchhhc-cCCC--ccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCc
Q psy5036          57 IMSWHVGSVNFICNFILIGPQGQTKPEAR-SGNE--ITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWS  129 (176)
Q Consensus        57 ~~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~--~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk  129 (176)
                      ...+++.||||+||||||++++|..|..+ |++.  +++|+++|  +|++|+++||++|+++|+.++++|..++..|.
T Consensus        16 ~~kdp~~PKrP~sAY~~F~~~~R~~i~~~~P~~~~~~~evsk~ige~Wk~ls~eeK~~y~~~A~~dk~rY~~e~~~Y~   93 (94)
T PTZ00199         16 KKKDPNAPKRALSAYMFFAKEKRAEIIAENPELAKDVAAVGKMVGEAWNKLSEEEKAPYEKKAQEDKVRYEKEKAEYA   93 (94)
T ss_pred             CCCCCCCCCCCCcHHHHHHHHHHHHHHHHCcCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34667899999999999999999999999 9976  79999999  99999999999999999999999999998884

>smart00398 HMG high mobility group

Probab=99.71  E-value=4.5e-18  Score=115.37  Aligned_cols=67  Identities=22%  Similarity=0.396  Sum_probs=64.7

Q ss_pred             CCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCc
Q psy5036          63 GSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWS  129 (176)
Q Consensus        63 ~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk  129 (176)
                      .||||+||||||+++.|..+..+ |+++.++|+++|  +|+.|++++|++|.++|+.++++|..++++|+
T Consensus         1 ~pkrp~~~y~~f~~~~r~~~~~~~~~~~~~~i~~~~~~~W~~l~~~ek~~y~~~a~~~~~~y~~~~~~y~   70 (70)
T smart00398        1 KPKRPMSAFMLFSQENRAKIKAENPDLSNAEISKKLGERWKLLSEEEKAPYEEKAKKDKERYEEEMPEYK   70 (70)
T ss_pred             CcCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            47999999999999999999999 999999999999  99999999999999999999999999999985

>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins

Probab=99.68  E-value=2.3e-17  Score=111.58  Aligned_cols=62  Identities=19%  Similarity=0.404  Sum_probs=60.0

Q ss_pred             CCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHC
Q psy5036          64 SVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELY  125 (176)
Q Consensus        64 ~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~  125 (176)
                      ||||+||||+|++++|..+..+ |++++++|+++|  +|++|+++||++|.++|++++++|..++
T Consensus         1 Pkrp~saf~~f~~~~r~~~~~~~p~~~~~~i~~~~~~~W~~ls~~eK~~y~~~a~~~~~~y~~e~   65 (66)
T cd01390           1 PKRPLSAYFLFSQEQRPKLKKENPDASVTEVTKILGEKWKELSEEEKKKYEEKAEKDKERYEKEM   65 (66)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            6899999999999999999999 999999999999  9999999999999999999999999875

These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.

>KOG0528|consensus

Probab=99.68  E-value=1.4e-17  Score=152.62  Aligned_cols=79  Identities=18%  Similarity=0.326  Sum_probs=73.6

Q ss_pred             CCCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCC
Q psy5036          58 MSWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNY  134 (176)
Q Consensus        58 ~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~  134 (176)
                      ...++||||||||||+|.++.|.+|... |++.+.+|||||  +|++||-.||++||++-+.+=..|++.||+|+|+++.
T Consensus       320 ~ss~PHIKRPMNAFMVWAkDERRKILqA~PDMHNSnISKILGSRWKaMSN~eKQPYYEEQaRLSk~HlEk~PdYrYkPRP  399 (511)
T KOG0528|consen  320 ASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMSNTEKQPYYEEQARLSKLHLEKYPDYRYKPRP  399 (511)
T ss_pred             CCCCccccCCcchhhcccchhhhhhhhcCccccccchhHHhcccccccccccccchHHHHHHHHHhhhccCcccccCCCC
Confidence            3567899999999999999999999999 999999999999  9999999999999999999989999999999998876


Q ss_pred             CC
Q psy5036         135 GY  136 (176)
Q Consensus       135 ~~  136 (176)
                      ++
T Consensus       400 KR  401 (511)
T KOG0528|consen  400 KR  401 (511)
T ss_pred             Cc
Confidence            43

>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors

Probab=99.65  E-value=6.4e-17  Score=108.53  Aligned_cols=63  Identities=22%  Similarity=0.444  Sum_probs=60.8

Q ss_pred             CCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCC
Q psy5036          64 SVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYP  126 (176)
Q Consensus        64 ~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P  126 (176)
                      ||||+||||||+++.|..+..+ |+++..+|+++|  +|+.|++++|++|.++|++++++|.++++
T Consensus         1 pkrp~~af~~f~~~~~~~~~~~~~~~~~~~i~~~~~~~W~~l~~~~k~~y~~~a~~~~~~y~~~~~   66 (66)
T cd00084           1 PKRPLSAYFLFSQEHRAEVKAENPGLSVGEISKILGEMWKSLSEEEKKKYEEKAEKDKERYEKEMP   66 (66)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence            6899999999999999999999 999999999999  99999999999999999999999999875

HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member

>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins

Probab=99.54  E-value=9.2e-16  Score=107.61  Aligned_cols=67  Identities=16%  Similarity=0.283  Sum_probs=58.3

Q ss_pred             CCCCCCCchhhhhhhhhccchhhc--cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q psy5036          62 VGSVNFICNFILIGPQGQTKPEAR--SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGW  128 (176)
Q Consensus        62 ~~~KRPlNAFmLF~ke~R~kv~~e--P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Y  128 (176)
                      ++||||+|||+||+.+++..+..+  +.....||++.|  .|++||++||.+|.++|+.++++|..++..|
T Consensus         2 ~kpK~~~say~lF~~~~~~~~k~~G~~~~~~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~~k~~y~~e~~~~   72 (73)
T PF09011_consen    2 KKPKRPPSAYNLFMKEMRKEVKEEGGQKQSFREVMKEISERWKSLSEEEKEPYEERAKEDKERYEREMKEW   72 (73)
T ss_dssp             SS--SSSSHHHHHHHHHHHHHHHHT-T-SSHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            568999999999999999999877  667899999999  9999999999999999999999999987655

It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....

>KOG0381|consensus

Probab=99.47  E-value=2.1e-14  Score=104.43  Aligned_cols=70  Identities=20%  Similarity=0.334  Sum_probs=66.1

Q ss_pred             CCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCC-CCcc
Q psy5036          61 HVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYP-GWSA  130 (176)
Q Consensus        61 ~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P-~Yk~  130 (176)
                      ...+|||++|||+|+.+.|..+.++ |++++.||+++|  +|++|++++|.+|...|..++++|..++. .|+.
T Consensus        20 ~~~pkrp~sa~~~f~~~~~~~~k~~~p~~~~~~v~k~~g~~W~~l~~~~k~~y~~ka~~~k~~Y~~~~~~~~~~   93 (96)
T KOG0381|consen   20 AQAPKRPLSAFFLFSSEQRSKIKAENPGLSVGEVAKALGEMWKNLAEEEKQPYEEKASKLKEKYEKELAGEYKA   93 (96)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4689999999999999999999999 999999999999  99999999999999999999999999998 6653

>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]

Probab=99.43  E-value=5.3e-14  Score=117.94  Aligned_cols=76  Identities=14%  Similarity=0.269  Sum_probs=71.9

Q ss_pred             CCCCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCC
Q psy5036          57 IMSWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARD  132 (176)
Q Consensus        57 ~~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~  132 (176)
                      ...+++.||||++|||+|+.+.|.+|..+ |.+.++||+++|  +|++|+++||++|+.+|..++++|+.+.-.|....
T Consensus        64 ~k~dpN~PKRp~sayf~y~~~~R~ei~~~~p~l~~~e~~k~~~e~WK~Ltd~eke~y~k~~~~~~erYq~ek~~y~~k~  142 (211)
T COG5648          64 KKKDPNGPKRPLSAYFLYSAENRDEIRKENPKLTFGEVGKLLSEKWKELTDEEKEPYYKEANSDRERYQREKEEYNKKL  142 (211)
T ss_pred             HhcCCCCCCCchhHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhccHhhhhhHHHHHhhHHHHHHHHHHhhhccc
Confidence            46788999999999999999999999999 999999999999  99999999999999999999999999999997653

>KOG0526|consensus

Probab=99.06  E-value=8.3e-11  Score=109.78  Aligned_cols=72  Identities=8%  Similarity=0.131  Sum_probs=67.5

Q ss_pred             CCCCCCCCCCCCchhhhhhhhhccchhhccCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC
Q psy5036          57 IMSWHVGSVNFICNFILIGPQGQTKPEARSGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR  131 (176)
Q Consensus        57 ~~~k~~~~KRPlNAFmLF~ke~R~kv~~eP~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~  131 (176)
                      +.+.+++|||+++|||||.+..|..|+.+ +.+++||+|.+  .|+.|+.  |.+|++.|+..|++|+.+|-+|+..
T Consensus       529 k~kdpnapkra~sa~m~w~~~~r~~ik~d-gi~~~dv~kk~g~~wk~ms~--k~~we~ka~~dk~ry~~em~~yk~g  602 (615)
T KOG0526|consen  529 KKKDPNAPKRATSAYMLWLNASRESIKED-GISVGDVAKKAGEKWKQMSA--KEEWEDKAAVDKQRYEDEMKEYKNG  602 (615)
T ss_pred             cCCCCCCCccchhHHHHHHHhhhhhHhhc-CchHHHHHHHHhHHHhhhcc--cchhhHHHHHHHHHHHHHHHhhcCC
Confidence            45667899999999999999999999998 89999999999  9999999  9999999999999999999999943

>KOG2746|consensus

Probab=98.80  E-value=2.4e-09  Score=101.98  Aligned_cols=66  Identities=15%  Similarity=0.228  Sum_probs=62.4

Q ss_pred             CCCCCCCCCCchhhhhhhhhc--cchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy5036          59 SWHVGSVNFICNFILIGPQGQ--TKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMEL  124 (176)
Q Consensus        59 ~k~~~~KRPlNAFmLF~ke~R--~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~  124 (176)
                      ..+.||.|||||||+|++.+|  ..+.+. |+..+..|++||  .|-.|.+.||++|.++|.+.++.|-++
T Consensus       177 r~k~HirrPMnaf~ifskrhr~~g~vhq~~pn~DNrtIskiLgewWytL~~~Ekq~yhdLa~Qvk~Ahfka  247 (683)
T KOG2746|consen  177 RDKDHIRRPMNAFHIFSKRHRGEGRVHQRHPNQDNRTISKILGEWWYTLGPNEKQKYHDLAFQVKEAHFKA  247 (683)
T ss_pred             CcchhhhhhhHHHHHHHhhcCCccchhccCccccchhHHHHHhhhHhhhCchhhhhHHHHHHHHHHHHhhh
Confidence            456899999999999999999  888888 999999999999  899999999999999999999999987

>KOG4715|consensus

Probab=98.63  E-value=6.3e-08  Score=86.31  Aligned_cols=72  Identities=14%  Similarity=0.205  Sum_probs=68.4

Q ss_pred             CCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCC
Q psy5036          63 GSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNY  134 (176)
Q Consensus        63 ~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~  134 (176)
                      -|-+||-.||.|++...++|++. |.+..-||.|+|  +|..|+++||+.|.++++.+|.+|++.|-.|...+-|
T Consensus        64 ppekpl~pymrySrkvWd~VkA~nPe~kLWeiGK~Ig~mW~dLpd~EK~ey~~EYeaEKieY~~smkayh~sp~y  138 (410)
T KOG4715|consen   64 PPEKPLMPYMRYSRKVWDQVKASNPELKLWEIGKIIGGMWLDLPDEEKQEYLNEYEAEKIEYNESMKAYHNSPAY  138 (410)
T ss_pred             CCCcccchhhHHhhhhhhhhhccCcchHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHHHhhCCchH
Confidence            35689999999999999999999 999999999999  9999999999999999999999999999999888866

>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]

Probab=96.11  E-value=0.0077  Score=51.12  Aligned_cols=69  Identities=20%  Similarity=0.359  Sum_probs=62.4

Q ss_pred             CCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q psy5036          59 SWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPG  127 (176)
Q Consensus        59 ~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~  127 (176)
                      .++-..++|.-.|+-+..+.|.++... +.....++.+++  .|..|++.-|.+|.+.+.+.+++|...||+
T Consensus       139 ~~k~~~~~~~~~~~e~~~~~r~~~~~~~~~~~~~e~~k~~~~~w~el~~skK~~~~~~~Kk~k~~~~~~~~~  210 (211)
T COG5648         139 NKKLPNKAPIGPFIENEPKIRPKVEGPSPDKALVEETKIISKAWSELDESKKKKYIDKYKKLKEEYDSFYPE  210 (211)
T ss_pred             hcccCCCCCCchhhhccHHhccccCCCCcchhhhHHhhhhhhhhhhhChhhhhHHHHHHHHHHHHHhhhccc
Confidence            444556788899999999999999999 999999999999  999999999999999999999999998874

>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta

Probab=94.66  E-value=0.013  Score=48.83  Aligned_cols=48  Identities=19%  Similarity=0.209  Sum_probs=40.6

Q ss_pred             CchhhhhhhhhccchhhccCCCccccccce--eccCCCHHHHHHHHHHHHHHH
Q psy5036          68 ICNFILIGPQGQTKPEARSGNEITNKNQMI--QWHSLTREEQAKYYEKARQER  118 (176)
Q Consensus        68 lNAFmLF~ke~R~kv~~eP~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~k  118 (176)
                      -||||=|++++|.+.   .++...|+-...  .|..|++++|..|..++....
T Consensus        83 nnaYLNFLReFRrkh---~~L~p~dlI~~AAraW~rLSe~eK~rYrr~~~~~~  132 (183)
T PF06382_consen   83 NNAYLNFLREFRRKH---CGLSPQDLIQRAARAWCRLSEAEKNRYRRMAPSVR  132 (183)
T ss_pred             chHHHHHHHHHHHHc---cCCCHHHHHHHHHHHHHhCCHHHHHHHHhhcchhh
Confidence            589999999999876   468888876655  999999999999999877554

The function of this family is unknown.

>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT)

Probab=94.28  E-value=0.023  Score=47.88  Aligned_cols=51  Identities=8%  Similarity=0.010  Sum_probs=37.3

Q ss_pred             CCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHH
Q psy5036          59 SWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKAR  115 (176)
Q Consensus        59 ~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~  115 (176)
                      ....+.+||+|+||+|+.-+-    .. ++....++|.+|  .|..-.  -|..|.-+|.
T Consensus        39 ~~~~~~kr~lN~Fm~FRsyy~----~~~~~~~Qk~~S~~l~~lW~~dp--~k~~W~l~ak   92 (201)
T PF04769_consen   39 RSPEKAKRPLNGFMAFRSYYS----PIFPPLPQKELSGILTKLWEKDP--FKNKWSLMAK   92 (201)
T ss_pred             ccccccccchhHHHHHHHHHH----hhcCCcCHHHHHHHHHHHHhCCc--cHhHHHHHhh
Confidence            344567899999999977665    33 778899999999  899733  3555655554

MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus

>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A

Probab=93.57  E-value=0.043  Score=40.33  Aligned_cols=67  Identities=10%  Similarity=0.077  Sum_probs=45.3

Q ss_pred             CCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCC
Q psy5036          67 FICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNY  134 (176)
Q Consensus        67 PlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~  134 (176)
                      |-+|==||-+.......+. +.-...+.. .+  .|++|++.+|-+|...|.++..+|+..+-+|..-.-.
T Consensus         7 PKt~qe~Wqq~vi~dYla~~~~dr~K~~k-am~~~W~~me~Kekl~WIkKA~EdqKrYE~el~e~r~~~~~   76 (85)
T PF14887_consen    7 PKTAQEIWQQSVIGDYLAKFRNDRKKALK-AMEAQWSQMEKKEKLKWIKKAAEDQKRYERELREMRSAPAD   76 (85)
T ss_dssp             --THHHHHHHHHHHHHHHHTTSTHHHHHH-HHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHCCS-CCCT
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHhHHHHHH-HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            4455556655554444433 333333332 33  8999999999999999999999999999998765433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	176
2lef_A	86	Lef1 Hmg Domain (From Mouse), Complexed With Dna (1		4e-15

>pdb|2LEF|A Chain A, Lef1 Hmg Domain (From Mouse), Complexed With Dna (15bp), Nmr, 12 Structures Length = 86

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 45/56 (80%), Gaps = 4/56 (7%)
Query: 80  TKPEARSGNEITNKNQMIQWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYG 135
           T  E+ + N+I  +    +WH+L+REEQAKYYE AR+ERQLHM+LYPGWSARDNYG
Sbjct: 26  TLKESAAINQILGR----RWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYG 77

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	176
2lef_A	86	LEF-1 HMG, protein (lymphoid enhancer-binding fact	8e-14
1i11_A	81	Transcription factor SOX-5; HMG BOX, DNA bending,	1e-08
1j46_A	85	SRY, sex-determining region Y protein; MALE sex de	1e-08
1wz6_A	82	HMG-box transcription factor BBX; bobby SOX homolo	3e-08
1hry_A	76	Human SRY; DNA, DNA-binding protein, DNA binding p	5e-08
4a3n_A	71	Transcription factor SOX-17; 2.40A {Homo sapiens}	8e-08
3u2b_C	79	Transcription factor SOX-4; HMG domain, transcript	1e-07
4euw_A	106	Transcription factor SOX-9; protein-DNA complex, H	1e-07
2e6o_A	87	HMG box-containing protein 1; HMG-box domain, HMG-	7e-07
3f27_D	83	Transcription factor SOX-17; protein-DNA complex,	1e-06
1gt0_D	80	Transcription factor SOX-2; POU factors, SOX prote	2e-06

>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1 Length = 86

 Score = 62.6 bits (153), Expect = 8e-14
 Identities = 39/50 (78%), Positives = 46/50 (92%), Gaps = 3/50 (6%)

Query: 98  QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKER 147
           +WH+L+REEQAKYYE AR+ERQLHM+LYPGWSARDNYG   KKKKRK+E+
Sbjct: 40  RWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYG---KKKKRKREK 86

>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1 Length = 81

 Score = 48.7 bits (117), Expect = 1e-08
 Identities = 10/34 (29%), Positives = 20/34 (58%)

Query: 98  QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR 131
           +W ++T  E+  YYE+  +  + H+E YP +  +
Sbjct: 42  RWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYK 75

>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A Length = 85

 Score = 48.7 bits (117), Expect = 1e-08
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 6/50 (12%)

Query: 98  QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKER 147
           QW  LT  E+  ++++A++ + +H E YP      NY Y  ++K +   +
Sbjct: 42  QWKMLTEAEKWPFFQEAQKLQAMHREKYP------NYKYRPRRKAKMLPK 85

>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus} Length = 82

 Score = 47.6 bits (114), Expect = 3e-08
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 98  QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYG 135
            W  L  +E+ KY + A++ +   M+  PG+ +  + G
Sbjct: 45  WWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSGPSSG 82

>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A* Length = 76

 Score = 47.2 bits (113), Expect = 5e-08
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 98  QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR 131
           QW  LT  E+  ++++A++ + +H E YP +  R
Sbjct: 42  QWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75

>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} Length = 71

 Score = 46.4 bits (111), Expect = 8e-08
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 98  QWHSLTREEQAKYYEKARQERQLHMELYPGW 128
            W +LT  E+  + E+A + R  HM+ +P +
Sbjct: 40  SWKALTLAEKRPFVEEAERLRVQHMQDHPNY 70

>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} Length = 79

 Score = 46.0 bits (110), Expect = 1e-07
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 6/46 (13%)

Query: 98  QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKR 143
           +W  L   ++  + ++A + R  HM  YP      +Y Y  +KK +
Sbjct: 40  RWKLLKDSDKIPFIQEAERLRLKHMADYP------DYKYRPRKKVK 79

>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens} Length = 106

 Score = 46.6 bits (111), Expect = 1e-07
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 98  QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKK 142
            W  L   E+  + E+A + R  H + +P      +Y Y  +++K
Sbjct: 67  LWRLLNESEKRPFVEEAERLRVQHKKDHP------DYKYQPRRRK 105

>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens} Length = 87

 Score = 44.3 bits (105), Expect = 7e-07
 Identities = 7/29 (24%), Positives = 13/29 (44%)

Query: 98  QWHSLTREEQAKYYEKARQERQLHMELYP 126
           +W  +  EE+  Y  +A+   +    L P
Sbjct: 55  RWKKMKNEERRMYTLEAKALAEEQKRLNP 83

>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} PDB: 2yul_A Length = 83

 Score = 43.7 bits (104), Expect = 1e-06
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 6/46 (13%)

Query: 98  QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKR 143
            W +LT  E+  + E+A + R  HM+ +P      NY Y  +++K+
Sbjct: 44  SWKALTLAEKRPFVEEAERLRVQHMQDHP------NYKYRPRRRKQ 83

>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B Length = 80

 Score = 42.9 bits (102), Expect = 2e-06
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 6/46 (13%)

Query: 98  QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKR 143
           +W  L+  E+  + ++A++ R LHM+ +P      +Y Y  ++K +
Sbjct: 40  EWKLLSETEKRPFIDEAKRLRALHMKEHP------DYKYRPRRKTK 79

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	176
2lef_A	86	LEF-1 HMG, protein (lymphoid enhancer-binding fact	99.93
3u2b_C	79	Transcription factor SOX-4; HMG domain, transcript	99.9
1hry_A	76	Human SRY; DNA, DNA-binding protein, DNA binding p	99.9
1j46_A	85	SRY, sex-determining region Y protein; MALE sex de	99.9
1i11_A	81	Transcription factor SOX-5; HMG BOX, DNA bending,	99.89
3f27_D	83	Transcription factor SOX-17; protein-DNA complex,	99.89
1gt0_D	80	Transcription factor SOX-2; POU factors, SOX prote	99.89
2e6o_A	87	HMG box-containing protein 1; HMG-box domain, HMG-	99.89
1wz6_A	82	HMG-box transcription factor BBX; bobby SOX homolo	99.88
4euw_A	106	Transcription factor SOX-9; protein-DNA complex, H	99.88
4a3n_A	71	Transcription factor SOX-17; 2.40A {Homo sapiens}	99.87
2co9_A	102	Thymus high mobility group box protein TOX; TOX pr	99.84
1k99_A	99	Upstream binding factor 1; alpha-helix, L-shape, D	99.84
2crj_A	92	SWI/SNF-related matrix-associated actin- dependent	99.84
1hme_A	77	High mobility group protein fragment-B; DNA-bindin	99.83
1aab_A	83	High mobility group protein; HMG-BOX, DNA-binding;	99.82
2cs1_A	92	PMS1 protein homolog 1; DNA mismatch repair protei	99.81
1cg7_A	93	Protein (NON histone protein 6 A); HMG BOX, DNA be	99.8
2eqz_A	86	High mobility group protein B3; HMG-box domain, mo	99.8
1wxl_A	73	Single-strand recognition protein; FACT, SSRP1, HM	99.79
1ckt_A	71	High mobility group 1 protein; high-mobility group	99.79
3nm9_A	73	HMG-D, high mobility group protein D; DNA bending,	99.79
1wgf_A	90	Upstream binding factor 1; transcription factor, D	99.78
2lhj_A	97	High mobility group protein homolog NHP1; structur	99.78
2gzk_A	159	Sex-determining region on Y / HMGB1; protein-DNA c	99.74
3fgh_A	67	Transcription factor A, mitochondrial; HMG domain,	99.73
2yrq_A	173	High mobility group protein B1; HMG box domain, DN	99.72
2gzk_A	159	Sex-determining region on Y / HMGB1; protein-DNA c	99.71
2d7l_A	81	WD repeat and HMG-box DNA binding protein 1; high	99.71
1v64_A	108	Nucleolar transcription factor 1; DNA binding, str	99.7
2cto_A	93	Novel protein; high mobility group box domain, hel	99.68
1v63_A	101	Nucleolar transcription factor 1; DNA binding, str	99.68
2yrq_A	173	High mobility group protein B1; HMG box domain, DN	99.68
1l8y_A	91	Upstream binding factor 1; HUBF, HMG box 5, DNA bi	99.68
2yuk_A	90	Myeloid/lymphoid or mixed-lineage leukemia protein	99.64
3tmm_A	238	Transcription factor A, mitochondrial; HMG, high m	99.6
3tq6_A	214	Transcription factor A, mitochondrial; transcripti	99.58
3tq6_A	214	Transcription factor A, mitochondrial; transcripti	99.53
3tmm_A	238	Transcription factor A, mitochondrial; HMG, high m	99.5

>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1

Probab=99.93  E-value=8.3e-27  Score=166.99  Aligned_cols=83  Identities=54%  Similarity=0.868  Sum_probs=77.4

Q ss_pred             CCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCCCCcc
Q psy5036          62 VGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGA  138 (176)
Q Consensus        62 ~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~~~~~  138 (176)
                      .+||||+||||||++++|..|.++ |+++++|||++|  +|++|+++||++|.++|++++++|.++||+|+|+|+++   
T Consensus         1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~~~---   77 (86)
T 2lef_A            1 MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYG---   77 (86)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCSSTT---
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCCCCCC---
Confidence            479999999999999999999999 999999999999  99999999999999999999999999999999999988   


Q ss_pred             ccccccccc
Q psy5036         139 KKKKRKKER  147 (176)
Q Consensus       139 kkkkrk~~~  147 (176)
                      ++++|++++
T Consensus        78 ~~kkrkkd~   86 (86)
T 2lef_A           78 KKKKRKREK   86 (86)
T ss_dssp             TSCCSSCCC
T ss_pred             CCccccccC
Confidence            456666553

>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1

Probab=99.90  E-value=8.2e-25  Score=153.44  Aligned_cols=73  Identities=15%  Similarity=0.242  Sum_probs=70.8

Q ss_pred             CCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCC
Q psy5036          62 VGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNY  134 (176)
Q Consensus        62 ~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~  134 (176)
                      ++||||+||||||++++|.+|..+ |+++++||+++|  +|++|+++||++|.++|++++++|.++||+|+|+|+.
T Consensus         1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~Prk   76 (79)
T 3u2b_C            1 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYRPRK   76 (79)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCCCCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCC
Confidence            589999999999999999999999 999999999999  9999999999999999999999999999999999864

>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*

Probab=99.90  E-value=1.7e-24  Score=151.05  Aligned_cols=72  Identities=19%  Similarity=0.343  Sum_probs=68.8

Q ss_pred             CCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCC
Q psy5036          61 HVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARD  132 (176)
Q Consensus        61 ~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~  132 (176)
                      +++||||+||||||++++|..|+.+ |+++++||+++|  +|++|+++||++|.++|++++++|.++||+|+|+|
T Consensus         2 p~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P   76 (76)
T 1hry_A            2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP   76 (76)
T ss_dssp             -CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCCC-
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCc
Confidence            5789999999999999999999999 999999999999  99999999999999999999999999999999986

>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A

Probab=99.90  E-value=3.7e-24  Score=153.04  Aligned_cols=75  Identities=19%  Similarity=0.318  Sum_probs=72.3

Q ss_pred             CCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCCC
Q psy5036          61 HVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYG  135 (176)
Q Consensus        61 ~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~~  135 (176)
                      +++||||+||||||++++|..|.++ |+++++||+++|  +|++|+++||++|.++|++++++|..+||+|+|+++..
T Consensus         2 p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~prr~   79 (85)
T 1j46_A            2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRK   79 (85)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCCC
T ss_pred             cCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCCCCc
Confidence            4689999999999999999999999 999999999999  99999999999999999999999999999999999765

>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1

Probab=99.89  E-value=1e-24  Score=154.34  Aligned_cols=75  Identities=17%  Similarity=0.326  Sum_probs=65.9

Q ss_pred             CCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCCC
Q psy5036          61 HVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYG  135 (176)
Q Consensus        61 ~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~~  135 (176)
                      .++||||+||||||++++|.+|.++ |+++++||+++|  +|++|+++||++|+++|++++++|.++||+|+|+|+..
T Consensus         2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~pr~~   79 (81)
T 1i11_A            2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPK   79 (81)
T ss_dssp             -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC-------
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeccCCC
Confidence            4689999999999999999999999 999999999999  99999999999999999999999999999999998543

>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A

Probab=99.89  E-value=3e-24  Score=152.04  Aligned_cols=76  Identities=17%  Similarity=0.285  Sum_probs=69.5

Q ss_pred             CCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCCC
Q psy5036          60 WHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYG  135 (176)
Q Consensus        60 k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~~  135 (176)
                      ..++||||+||||||++++|..|..+ |+++++||+++|  +|++|+++||++|.++|++++++|.++||+|+|+|+..
T Consensus         3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P~~k   81 (83)
T 3f27_D            3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRR   81 (83)
T ss_dssp             ----CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCC-
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCCccC
Confidence            35689999999999999999999999 999999999999  99999999999999999999999999999999998654

>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B

Probab=99.89  E-value=9.4e-24  Score=148.79  Aligned_cols=74  Identities=16%  Similarity=0.274  Sum_probs=71.2

Q ss_pred             CCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCCC
Q psy5036          62 VGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYG  135 (176)
Q Consensus        62 ~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~~  135 (176)
                      ++||||+||||||++++|..|.++ |+++++||+++|  +|++|+++||++|.++|++++++|.++||+|+|+|+..
T Consensus         1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~r~   77 (80)
T 1gt0_D            1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRK   77 (80)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCCC
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCCCCC
Confidence            479999999999999999999999 999999999999  99999999999999999999999999999999998655

>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}

Probab=99.89  E-value=8.8e-24  Score=151.89  Aligned_cols=73  Identities=14%  Similarity=0.205  Sum_probs=70.2

Q ss_pred             CCCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCcc
Q psy5036          58 MSWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSA  130 (176)
Q Consensus        58 ~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~  130 (176)
                      ..+.++||||+||||||++++|.+|..+ |+++++||+++|  +|++|+++||++|+++|++++++|+++||+|+|
T Consensus        12 ~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yky   87 (87)
T 2e6o_A           12 ATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCWK   87 (87)
T ss_dssp             CCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence            4567889999999999999999999999 999999999999  999999999999999999999999999999997

>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}

Probab=99.88  E-value=7.1e-24  Score=150.28  Aligned_cols=77  Identities=18%  Similarity=0.333  Sum_probs=73.2

Q ss_pred             CCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCCC
Q psy5036          59 SWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYG  135 (176)
Q Consensus        59 ~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~~  135 (176)
                      ...++||||+||||||++++|..|.++ |+++++||+++|  +|++|+++||++|.++|++++++|.++||+|+++|+.+
T Consensus         3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~p~~~   82 (82)
T 1wz6_A            3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSGPSSG   82 (82)
T ss_dssp             SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCCTTCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCC
Confidence            356789999999999999999999999 999999999999  99999999999999999999999999999999998764

>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}

Probab=99.88  E-value=1.1e-23  Score=157.07  Aligned_cols=78  Identities=13%  Similarity=0.162  Sum_probs=68.3

Q ss_pred             CCCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCC
Q psy5036          58 MSWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNY  134 (176)
Q Consensus        58 ~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~  134 (176)
                      ..++++||||+||||||++++|.+|+.+ |+++++||+++|  +|++|+++||++|+++|++++++|+++||+|+|+|++
T Consensus        24 ~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~Prr  103 (106)
T 4euw_A           24 SKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRR  103 (106)
T ss_dssp             ----CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC----
T ss_pred             cCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCC
Confidence            5667899999999999999999999999 999999999999  9999999999999999999999999999999999865


Q ss_pred             C
Q psy5036         135 G  135 (176)
Q Consensus       135 ~  135 (176)
                      .
T Consensus       104 k  104 (106)
T 4euw_A          104 R  104 (106)
T ss_dssp             -
T ss_pred             C
Confidence            5

>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0

Probab=99.87  E-value=3e-23  Score=142.34  Aligned_cols=68  Identities=18%  Similarity=0.302  Sum_probs=60.5

Q ss_pred             CCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCc
Q psy5036          62 VGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWS  129 (176)
Q Consensus        62 ~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk  129 (176)
                      ++||||+||||||++++|..|..+ |+++++||+++|  +|++|+++||++|.++|++++++|.++||+|+
T Consensus         1 gk~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK   71 (71)
T 4a3n_A            1 GSIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK   71 (71)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence            479999999999999999999999 999999999999  99999999999999999999999999999996

>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.84  E-value=4.8e-22  Score=146.91  Aligned_cols=80  Identities=10%  Similarity=0.138  Sum_probs=74.2

Q ss_pred             CCCCCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCC
Q psy5036          56 SIMSWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARD  132 (176)
Q Consensus        56 ~~~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~  132 (176)
                      ....++++||||+||||||++++|..|.++ |+++++||+++|  +|++|+++||++|.++|++++++|.++|++|++..
T Consensus        10 k~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~   89 (102)
T 2co9_A           10 KKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRASL   89 (102)
T ss_dssp             SSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            345677889999999999999999999999 999999999999  99999999999999999999999999999999876


Q ss_pred             CCC
Q psy5036         133 NYG  135 (176)
Q Consensus       133 n~~  135 (176)
                      ...
T Consensus        90 ~~~   92 (102)
T 2co9_A           90 VSK   92 (102)
T ss_dssp             TSS
T ss_pred             ccc
Confidence            543

>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1

Probab=99.84  E-value=5.3e-22  Score=146.34  Aligned_cols=76  Identities=11%  Similarity=0.086  Sum_probs=69.6

Q ss_pred             CCCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHH-------HHHHCCC
Q psy5036          58 MSWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQL-------HMELYPG  127 (176)
Q Consensus        58 ~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~-------h~~~~P~  127 (176)
                      ..++++||||+||||||++++|..|.++ |+++++||+++|  +|++||++||++|.++|++++++       |...+|+
T Consensus         5 ~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~~~P~   84 (99)
T 1k99_A            5 KKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPD   84 (99)
T ss_dssp             CSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGGCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            4567889999999999999999999999 999999999999  99999999999999999999999       6667777


Q ss_pred             CccCCC
Q psy5036         128 WSARDN  133 (176)
Q Consensus       128 Yk~~~n  133 (176)
                      |+|++.
T Consensus        85 ~~~~~~   90 (99)
T 1k99_A           85 LIQNAK   90 (99)
T ss_dssp             CSCCCC
T ss_pred             ccCCCc
Confidence            777664

>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}

Probab=99.84  E-value=8.9e-23  Score=147.98  Aligned_cols=78  Identities=15%  Similarity=0.309  Sum_probs=73.5

Q ss_pred             CCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCCC
Q psy5036          59 SWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYG  135 (176)
Q Consensus        59 ~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~~  135 (176)
                      .++++||||+||||||++++|..|.++ |+++++||+++|  +|++|+++||++|.++|++++++|.++|++|++++.|.
T Consensus         3 kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~~~~   82 (92)
T 2crj_A            3 SGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAYK   82 (92)
T ss_dssp             CCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence            356789999999999999999999999 999999999999  99999999999999999999999999999999988765


Q ss_pred             C
Q psy5036         136 Y  136 (176)
Q Consensus       136 ~  136 (176)
                      .
T Consensus        83 ~   83 (92)
T 2crj_A           83 V   83 (92)
T ss_dssp             C
T ss_pred             H
Confidence            3

>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A

Probab=99.83  E-value=5.1e-22  Score=138.75  Aligned_cols=72  Identities=14%  Similarity=0.199  Sum_probs=68.9

Q ss_pred             CCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC
Q psy5036          60 WHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR  131 (176)
Q Consensus        60 k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~  131 (176)
                      ++++||||+||||||++++|..|..+ |+++++||+++|  +|++|+++||++|.++|++++++|.++|++|+.+
T Consensus         3 dp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~k   77 (77)
T 1hme_A            3 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK   77 (77)
T ss_dssp             CSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            56789999999999999999999999 999999999999  9999999999999999999999999999999853

>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1

Probab=99.82  E-value=1.1e-20  Score=134.03  Aligned_cols=73  Identities=5%  Similarity=0.167  Sum_probs=68.4

Q ss_pred             CCCCCCCCCCchhhhhhhhhccchhhc-cCCC--ccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC
Q psy5036          59 SWHVGSVNFICNFILIGPQGQTKPEAR-SGNE--ITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR  131 (176)
Q Consensus        59 ~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~--~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~  131 (176)
                      .++++||||+||||||++++|..|..+ |+++  ++||+++|  +|++|+++||++|.++|++++++|.+++++|+..
T Consensus         3 kdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~   80 (83)
T 1aab_A            3 GDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP   80 (83)
T ss_dssp             CCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            356789999999999999999999999 9987  49999999  9999999999999999999999999999999765

>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=2.2e-21  Score=140.61  Aligned_cols=73  Identities=16%  Similarity=0.163  Sum_probs=69.8

Q ss_pred             CCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCC
Q psy5036          60 WHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARD  132 (176)
Q Consensus        60 k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~  132 (176)
                      ..++||||+||||||++++|..|+.+ |++++.||+++|  +|++|+++||++|.++|++++++|.+++++|+.+.
T Consensus         4 ~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~   79 (92)
T 2cs1_A            4 GSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQE   79 (92)
T ss_dssp             CCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            45789999999999999999999999 999999999999  99999999999999999999999999999998864

>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A

Probab=99.80  E-value=5.1e-21  Score=139.13  Aligned_cols=75  Identities=12%  Similarity=0.182  Sum_probs=70.8

Q ss_pred             CCCCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC
Q psy5036          57 IMSWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR  131 (176)
Q Consensus        57 ~~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~  131 (176)
                      ...+.++||||+||||||++++|..|..+ |+++++||+++|  +|++|+++||++|.++|++++++|.+++++|+.+
T Consensus        14 ~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y~~~   91 (93)
T 1cg7_A           14 KKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYNAT   91 (93)
T ss_dssp             CCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            35677889999999999999999999999 999999999999  9999999999999999999999999999999754

>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.80  E-value=1.2e-20  Score=134.98  Aligned_cols=72  Identities=7%  Similarity=0.140  Sum_probs=67.4

Q ss_pred             CCCCCCCCCCCchhhhhhhhhccchhhc-cCCC--ccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCc
Q psy5036          58 MSWHVGSVNFICNFILIGPQGQTKPEAR-SGNE--ITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWS  129 (176)
Q Consensus        58 ~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~--~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk  129 (176)
                      ..++++||||+||||||++++|..|+.+ |+++  ++||+++|  +|++|+++||++|+++|++++++|.+++++|+
T Consensus        10 ~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y~   86 (86)
T 2eqz_A           10 KGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG   86 (86)
T ss_dssp             SCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4567889999999999999999999999 9987  49999999  99999999999999999999999999998884

>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}

Probab=99.79  E-value=1.2e-20  Score=131.06  Aligned_cols=69  Identities=13%  Similarity=0.205  Sum_probs=65.7

Q ss_pred             CCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC
Q psy5036          61 HVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR  131 (176)
Q Consensus        61 ~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~  131 (176)
                      +++||||+||||||++++|..|+.+ |+++++||+++|  +|++|  +||++|.++|++++++|.+++++|+.+
T Consensus         1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~   72 (73)
T 1wxl_A            1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE   72 (73)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred             CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3679999999999999999999999 999999999999  99999  999999999999999999999999754

>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A

Probab=99.79  E-value=1.4e-20  Score=129.37  Aligned_cols=66  Identities=6%  Similarity=0.234  Sum_probs=63.5

Q ss_pred             CCCCCCchhhhhhhhhccchhhc-cCCCc--cccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q psy5036          63 GSVNFICNFILIGPQGQTKPEAR-SGNEI--TNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGW  128 (176)
Q Consensus        63 ~~KRPlNAFmLF~ke~R~kv~~e-P~~~~--~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Y  128 (176)
                      +||||+||||||++++|..|+.+ |++++  +||+++|  +|++|+++||++|.++|++++++|.+++.+|
T Consensus         1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y   71 (71)
T 1ckt_A            1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY   71 (71)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            48999999999999999999999 99876  9999999  9999999999999999999999999999987

>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*

Probab=99.79  E-value=4.9e-21  Score=133.09  Aligned_cols=68  Identities=10%  Similarity=0.134  Sum_probs=65.0

Q ss_pred             CCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC
Q psy5036          62 VGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR  131 (176)
Q Consensus        62 ~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~  131 (176)
                      +.||||+||||||++++|.+|..+ |+++++||+++|  +|++|++  |++|+++|++++++|++++++|+..
T Consensus         2 ~~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~k   72 (73)
T 3nm9_A            2 DKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEAN   72 (73)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            578999999999999999999999 999999999999  9999998  9999999999999999999999764

>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1

Probab=99.78  E-value=2.2e-20  Score=134.97  Aligned_cols=72  Identities=7%  Similarity=0.098  Sum_probs=67.3

Q ss_pred             CCCCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q psy5036          57 IMSWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGW  128 (176)
Q Consensus        57 ~~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Y  128 (176)
                      ...++++||||+||||||++++|..|..+ |+++++||+++|  +|++|+++||++|+++|++++++|+++|-.+
T Consensus        14 ~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~~   88 (90)
T 1wgf_A           14 GKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSGPS   88 (90)
T ss_dssp             CSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCSSC
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45677889999999999999999999999 999999999999  9999999999999999999999999988654

>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}

Probab=99.78  E-value=1.2e-20  Score=137.89  Aligned_cols=75  Identities=13%  Similarity=0.224  Sum_probs=70.6

Q ss_pred             CCCCCCCCCCCCchhhhhhhhhccchhhc-cCCC--ccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC
Q psy5036          57 IMSWHVGSVNFICNFILIGPQGQTKPEAR-SGNE--ITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR  131 (176)
Q Consensus        57 ~~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~--~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~  131 (176)
                      ...++++||||+||||||++++|..|..+ |+++  ++||+++|  +|++|+++||++|+++|++++++|.++|++|+.+
T Consensus        16 ~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~   95 (97)
T 2lhj_A           16 AKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKAEYAQR   95 (97)
T ss_dssp             TTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45677889999999999999999999999 9999  99999999  9999999999999999999999999999999754

>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1

Probab=99.74  E-value=8e-19  Score=137.28  Aligned_cols=73  Identities=19%  Similarity=0.346  Sum_probs=69.9

Q ss_pred             CCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCC
Q psy5036          61 HVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDN  133 (176)
Q Consensus        61 ~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n  133 (176)
                      +++||||+||||||+++.|.+|..+ |+++++|||++|  +|++|+++||++|+++|+.++++|..+|++|++.+.
T Consensus         2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~k~   77 (159)
T 2gzk_A            2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRKG   77 (159)
T ss_dssp             TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCCCC
T ss_pred             cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccccccc
Confidence            4689999999999999999999999 999999999999  999999999999999999999999999999998763

>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}

Probab=99.73  E-value=4.6e-19  Score=121.04  Aligned_cols=63  Identities=11%  Similarity=0.242  Sum_probs=59.0

Q ss_pred             CCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q psy5036          62 VGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGW  128 (176)
Q Consensus        62 ~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Y  128 (176)
                      ++||||+||||||++++|..|..+ |    +||+++|  +|++|+++||++|.++|++++++|.+++..|
T Consensus         1 g~PKrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y   66 (67)
T 3fgh_A            1 GKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW   66 (67)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            468999999999999999999876 5    6999999  9999999999999999999999999998776

>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.72  E-value=5e-19  Score=140.56  Aligned_cols=73  Identities=14%  Similarity=0.196  Sum_probs=70.0

Q ss_pred             CCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC
Q psy5036          59 SWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR  131 (176)
Q Consensus        59 ~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~  131 (176)
                      .++++||||+||||||++++|..|..+ |+++++||+++|  +|++|+++||++|.++|++++++|+.+|++|+++
T Consensus        97 kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~k  172 (173)
T 2yrq_A           97 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK  172 (173)
T ss_dssp             CCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             cCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            466889999999999999999999999 999999999999  9999999999999999999999999999999875

>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1

Probab=99.71  E-value=8.4e-19  Score=137.15  Aligned_cols=73  Identities=14%  Similarity=0.191  Sum_probs=69.3

Q ss_pred             CCCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCcc
Q psy5036          58 MSWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSA  130 (176)
Q Consensus        58 ~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~  130 (176)
                      ..+.+.||||+||||||++++|.+|..+ |+++++||+++|  +|++|+++||++|.++|++++++|..++++|+.
T Consensus        83 ~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~  158 (159)
T 2gzk_A           83 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA  158 (159)
T ss_dssp             SCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4566889999999999999999999999 999999999999  999999999999999999999999999999875

>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=9e-19  Score=125.51  Aligned_cols=57  Identities=14%  Similarity=0.065  Sum_probs=54.7

Q ss_pred             CCCCCCCCchhhhhhhhhccchhhc-cCCC-ccccccce--eccCCCHHHHHHHHHHHHHH
Q psy5036          61 HVGSVNFICNFILIGPQGQTKPEAR-SGNE-ITNKNQMI--QWHSLTREEQAKYYEKARQE  117 (176)
Q Consensus        61 ~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~-~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~  117 (176)
                      .++||||+||||||++++|.+|+.+ |+++ ++||+++|  +|++|+++||++|+++|+++
T Consensus         3 ~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d   63 (81)
T 2d7l_A            3 SGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGE   63 (81)
T ss_dssp             CCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5679999999999999999999999 9998 99999999  99999999999999999987

>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1

Probab=99.70  E-value=2.2e-18  Score=129.11  Aligned_cols=73  Identities=12%  Similarity=0.074  Sum_probs=67.3

Q ss_pred             CCCCCCCCC-CCCCchhhhhhhhhccchhhccCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC
Q psy5036          56 SIMSWHVGS-VNFICNFILIGPQGQTKPEARSGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR  131 (176)
Q Consensus        56 ~~~~k~~~~-KRPlNAFmLF~ke~R~kv~~eP~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~  131 (176)
                      ......++| |||+||||||++++|..|.   +++++||+++|  +|++|+++||++|+++|++++++|..++++|+..
T Consensus         9 kk~kd~~~P~KrP~say~lF~~e~r~~~k---~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~   84 (108)
T 1v64_A            9 LKDKFDGRPTKPPPNSYSLYCAELMANMK---DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLES   84 (108)
T ss_dssp             SSCCTTTSCCCCCSSHHHHHHHHHHHHCT---TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCCCCCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345667788 9999999999999999987   78999999999  9999999999999999999999999999999764

>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=1e-17  Score=123.28  Aligned_cols=66  Identities=21%  Similarity=0.189  Sum_probs=61.4

Q ss_pred             CCCCCCCCCCchhhhhhhhhccchhhccCCCccccccce-----eccCCCHHHHHHHHHHHHHHHHHHHHHC
Q psy5036          59 SWHVGSVNFICNFILIGPQGQTKPEARSGNEITNKNQMI-----QWHSLTREEQAKYYEKARQERQLHMELY  125 (176)
Q Consensus        59 ~k~~~~KRPlNAFmLF~ke~R~kv~~eP~~~~~eISKil-----~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~  125 (176)
                      ...++||||+||||||++++|.+|+.+ +++++||+++|     +|++|+++||++|+++|+++|++|+++.
T Consensus         6 ~~~~~PKRP~sAf~lF~~e~R~~ik~e-~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~   76 (93)
T 2cto_A            6 SGMPNRKASRNAYYFFVQEKIPELRRR-GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDP   76 (93)
T ss_dssp             CCCCCCCSSCCHHHHHHHTTHHHHHHH-TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc
Confidence            345679999999999999999999988 89999999986     9999999999999999999999999976

>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1

Probab=99.68  E-value=5.3e-18  Score=125.50  Aligned_cols=69  Identities=7%  Similarity=0.151  Sum_probs=62.3

Q ss_pred             CCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC
Q psy5036          61 HVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR  131 (176)
Q Consensus        61 ~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~  131 (176)
                      ..+||||+||||||+++++.  ..+ ++++++||+++|  +|++|+++||++|+++|++++++|+++|++|...
T Consensus         6 ~~~PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~   77 (101)
T 1v63_A            6 SGPKKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKS   77 (101)
T ss_dssp             CSSCCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45689999999999999964  344 678899999999  9999999999999999999999999999999764

>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=8.1e-18  Score=133.55  Aligned_cols=74  Identities=5%  Similarity=0.143  Sum_probs=69.7

Q ss_pred             CCCCCCCCCCCchhhhhhhhhccchhhc-cC--CCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC
Q psy5036          58 MSWHVGSVNFICNFILIGPQGQTKPEAR-SG--NEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR  131 (176)
Q Consensus        58 ~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~--~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~  131 (176)
                      ..++++||||+||||||++++|..|..+ |+  ++++||+++|  +|++|+++||++|.++|+.++++|..++++|...
T Consensus        10 k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~   88 (173)
T 2yrq_A           10 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP   88 (173)
T ss_dssp             SCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            4567889999999999999999999999 98  5899999999  9999999999999999999999999999999864

>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A

Probab=99.68  E-value=6.5e-18  Score=124.35  Aligned_cols=72  Identities=10%  Similarity=0.028  Sum_probs=67.6

Q ss_pred             CCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCC
Q psy5036          62 VGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNY  134 (176)
Q Consensus        62 ~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~  134 (176)
                      +.||||++|||||+++.|..+..+ |+ +++||++.|  +|++|+++||++|+++|++++++|++++.+|+.....
T Consensus         3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~~   77 (91)
T 1l8y_A            3 KLPESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAA   77 (91)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGGS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence            468999999999999999999999 98 999999999  9999999999999999999999999999999876543

>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=99.64  E-value=9.5e-18  Score=123.09  Aligned_cols=65  Identities=14%  Similarity=0.066  Sum_probs=61.0

Q ss_pred             CCCCCCCCCCCchhhhhhhhhccchhhc-cCCC--ccccccceeccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy5036          58 MSWHVGSVNFICNFILIGPQGQTKPEAR-SGNE--ITNKNQMIQWHSLTREEQAKYYEKARQERQLHMEL  124 (176)
Q Consensus        58 ~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~--~~eISKil~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~  124 (176)
                      .++++.||||+|||||||+++|.+|+.+ |+++  ++||+  -+|++|+++||++|+++|++++++|+..
T Consensus        17 ~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs--e~Wk~ls~eeK~pY~~kA~~~K~~h~~~   84 (90)
T 2yuk_A           17 EKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA--KLWRKASSQERAPYVQKARDNRAALRIN   84 (90)
T ss_dssp             HHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH--HHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence            4567889999999999999999999999 9999  99998  7899999999999999999999999873

>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}

Probab=99.60  E-value=4.7e-17  Score=136.24  Aligned_cols=72  Identities=14%  Similarity=0.186  Sum_probs=68.3

Q ss_pred             CCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCcc
Q psy5036          59 SWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSA  130 (176)
Q Consensus        59 ~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~  130 (176)
                      ..++.||||+||||||++++|.+|+.+ |+++++||+++|  +|++|+++||.+|+++|++++++|+++|.+|..
T Consensus        37 ~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~  111 (238)
T 3tmm_A           37 VLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKE  111 (238)
T ss_dssp             HHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345679999999999999999999999 999999999999  999999999999999999999999999999964

>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}

Probab=99.58  E-value=1.5e-16  Score=131.30  Aligned_cols=70  Identities=14%  Similarity=0.200  Sum_probs=67.0

Q ss_pred             CCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCcc
Q psy5036          61 HVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSA  130 (176)
Q Consensus        61 ~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~  130 (176)
                      ++.||||+||||||++++|.+|..+ |+++++||+++|  +|++|+++||.+|+++|+.++++|.+++++|..
T Consensus         7 p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~   79 (214)
T 3tq6_A            7 ASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKE   79 (214)
T ss_dssp             HHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcc
Confidence            3578999999999999999999999 999999999999  999999999999999999999999999999964

>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}

Probab=99.53  E-value=9e-16  Score=126.64  Aligned_cols=68  Identities=10%  Similarity=0.215  Sum_probs=63.5

Q ss_pred             CCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC
Q psy5036          60 WHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR  131 (176)
Q Consensus        60 k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~  131 (176)
                      ..+.||||+|||||||+++|.+|..+ |+    ||+++|  +|++|+++||++|+++|++++++|+.++++|+..
T Consensus       111 dp~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~~  181 (214)
T 3tq6_A          111 LLGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ  181 (214)
T ss_dssp             HTTCCCCCCCHHHHHHHHHTTTSSCSSHH----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCcccccchhhhhHHHHHHhhccCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46789999999999999999999876 54    899999  9999999999999999999999999999999875

>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}

Probab=99.50  E-value=1.1e-15  Score=127.92  Aligned_cols=68  Identities=10%  Similarity=0.215  Sum_probs=63.5

Q ss_pred             CCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC
Q psy5036          60 WHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR  131 (176)
Q Consensus        60 k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~  131 (176)
                      ..++||||+|||||||+++|.+|..+ |+    ||+++|  +|++|+++||++|+++|++++++|++++++|+.+
T Consensus       143 dp~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~k  213 (238)
T 3tmm_A          143 LLGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ  213 (238)
T ss_dssp             HTTCCCCCCCHHHHHHHHHTTTSCCSSHH----HHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCcHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            36789999999999999999999876 54    899999  9999999999999999999999999999999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	176
d2lefa_	86	a.21.1.1 (A:) Lymphoid enhancer-binding factor, LE	9e-11
d1i11a_	70	a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId:	5e-07
d1j46a_	85	a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 96	7e-07
d1hsma_	79	a.21.1.1 (A:) High mobility group protein 1, HMG1	2e-05
d1v63a_	101	a.21.1.1 (A:) Nucleolar transcription factor 1 (Up	2e-05
d1v64a_	108	a.21.1.1 (A:) Nucleolar transcription factor 1 (Up	5e-05
d1k99a_	91	a.21.1.1 (A:) Nucleolar transcription factor 1 (Up	8e-05
d1gt0d_	80	a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId:	8e-05
d1lwma_	93	a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces	5e-04

>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: Lymphoid enhancer-binding factor, LEF1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.3 bits (128), Expect = 9e-11
 Identities = 40/56 (71%), Positives = 48/56 (85%), Gaps = 3/56 (5%)

Query: 92  NKNQMIQWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKER 147
           N+    +WH+L+REEQAKYYE AR+ERQLHM+LYPGWSARDNYG   KKKKRK+E+
Sbjct: 34  NQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYG---KKKKRKREK 86

>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 70

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: Sox-5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.3 bits (102), Expect = 5e-07
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 98  QWHSLTREEQAKYYEKARQERQLHMELYPGW 128
           +W ++T  E+  YYE+  +  + H+E YP +
Sbjct: 40  RWKAMTNLEKQPYYEEQARLSKQHLEKYPDY 70

>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: SRY
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (101), Expect = 7e-07
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 9/58 (15%)

Query: 92  NKNQMIQWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKERAP 149
           +K    QW  LT  E+  ++++A++ + +H E YP +           + +RK +  P
Sbjct: 36  SKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYK---------YRPRRKAKMLP 84

>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster (Cricetulus griseus) [TaxId: 10029]} Length = 79

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: High mobility group protein 1, HMG1
species: Hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 39.1 bits (91), Expect = 2e-05
 Identities = 6/40 (15%), Positives = 19/40 (47%)

Query: 92  NKNQMIQWHSLTREEQAKYYEKARQERQLHMELYPGWSAR 131
            K     W++   +++  Y +KA + ++ + +    + A+
Sbjct: 34  AKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 73

>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (92), Expect = 2e-05
 Identities = 8/68 (11%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 81  KPEARSGNEITNKNQMIQWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYG-YGAK 139
           +       E        +W  +++ ++  Y + A ++++ +      W    +     A 
Sbjct: 28  ELNHLPLKERM-VEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDRAAY 86

Query: 140 KKKRKKER 147
           K+    +R
Sbjct: 87  KEYISNKR 94

>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (89), Expect = 5e-05
 Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 98  QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKERAPIIDTNG 155
           QW  L+++E+  Y++K  Q+++ +      +          ++++R      +++ +G
Sbjct: 51  QWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPE----EEQQRVLGEEKMLNISG 104

>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 8e-05
 Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 4/54 (7%)

Query: 92  NKNQMIQWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKK 145
            K    ++  L  +++ KY +  ++E+Q        +       +    +  KK
Sbjct: 42  TKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRED----HPDLIQNAKK 91

>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: Sox-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.5 bits (87), Expect = 8e-05
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 5/45 (11%)

Query: 98  QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKK 142
           +W  L+  E+  + ++A++ R LHM+ +P +  R       +K K
Sbjct: 40  EWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPR-----RKTK 79

>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 93

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: NHP6a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.6 bits (82), Expect = 5e-04
 Identities = 10/39 (25%), Positives = 20/39 (51%)

Query: 92  NKNQMIQWHSLTREEQAKYYEKARQERQLHMELYPGWSA 130
            K    +W +LT EE+  Y  KA+ +++ +      ++A
Sbjct: 52  GKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYNA 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	176
d2lefa_	86	Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus	99.92
d1gt0d_	80	Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.9
d1i11a_	70	Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}	99.89
d1j46a_	85	SRY {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1hsma_	79	High mobility group protein 1, HMG1 {Hamster (Cric	99.78
d1ckta_	71	High mobility group protein 1, HMG1 {Rat (Rattus n	99.75
d1qrva_	73	HMG-D {Drosophila melanogaster [TaxId: 7227]}	99.74
d1lwma_	93	NHP6a {Baker's yeast (Saccharomyces cerevisiae) [T	99.74
d1k99a_	91	Nucleolar transcription factor 1 (Upstream binding	99.73
d1wgfa_	90	Nucleolar transcription factor 1 (Upstream binding	99.72
d1v63a_	101	Nucleolar transcription factor 1 (Upstream binding	99.66
d1v64a_	108	Nucleolar transcription factor 1 (Upstream binding	99.61

>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: Lymphoid enhancer-binding factor, LEF1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=3e-26  Score=163.56  Aligned_cols=74  Identities=51%  Similarity=0.824  Sum_probs=72.1

Q ss_pred             CCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCCCC
Q psy5036          63 GSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGY  136 (176)
Q Consensus        63 ~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~~~  136 (176)
                      |||||+||||||++++|..|..+ |++++++||++|  +|++|+++||++|+++|++++++|.++||+|+++++++.
T Consensus         2 hikRP~naf~lF~~~~r~~~~~~~P~~~~~~Isk~lg~~Wk~ls~~eK~~y~~~A~~~k~~~~~~~p~yk~~~~~~~   78 (86)
T d2lefa_           2 HIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGK   78 (86)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCSSTTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcCCCCCCCCCC
Confidence            89999999999999999999999 999999999999  999999999999999999999999999999999998874

>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: Sox-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.1e-24  Score=154.04  Aligned_cols=73  Identities=16%  Similarity=0.282  Sum_probs=70.4

Q ss_pred             CCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCC
Q psy5036          62 VGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNY  134 (176)
Q Consensus        62 ~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~  134 (176)
                      ++||||+||||||++++|.+|.++ |+++++|||++|  +|++|+++||++|+++|++++++|.++||+|+|.++.
T Consensus         1 ~kiKRP~nAy~lF~~~~r~~~~~~~p~~~~~eisk~~g~~W~~l~~eeK~~y~~~A~~~k~~y~~~~p~Yk~~p~r   76 (80)
T d1gt0d_           1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRR   76 (80)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCC
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHCcCCHHHHHHHHHHHHHHHHHHHHHCccccCCCCC
Confidence            479999999999999999999999 999999999999  9999999999999999999999999999999999854

>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: Sox-5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=9.7e-25  Score=150.23  Aligned_cols=67  Identities=19%  Similarity=0.385  Sum_probs=65.9

Q ss_pred             CCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q psy5036          62 VGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGW  128 (176)
Q Consensus        62 ~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Y  128 (176)
                      +|||||+|||||||+++|.+|+.+ |+++++|||++|  +|++|+++||++|+++|++++++|.++||+|
T Consensus         1 p~iKRP~nay~lf~~~~r~~i~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~~~~~~p~Y   70 (70)
T d1i11a_           1 PHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDY   70 (70)
T ss_dssp             CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcCC
Confidence            589999999999999999999999 999999999999  9999999999999999999999999999998

>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: SRY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.3e-24  Score=151.44  Aligned_cols=74  Identities=19%  Similarity=0.327  Sum_probs=71.1

Q ss_pred             CCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCC
Q psy5036          61 HVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNY  134 (176)
Q Consensus        61 ~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~  134 (176)
                      .++||||+||||||++++|.+|..+ |+++++|||++|  +|++|+++||++|+++|++++++|.++||+|+++++.
T Consensus         2 ~~~iKRP~nay~lF~~~~r~~i~~~~p~~~~~eisk~ig~~W~~L~~eeK~~y~~~A~~~k~~y~~~~~~yk~~p~~   78 (85)
T d1j46a_           2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRR   78 (85)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhHHhccCCCC
Confidence            4789999999999999999999999 999999999999  9999999999999999999999999999999998754

>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: High mobility group protein 1, HMG1
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.78  E-value=3.3e-21  Score=134.44  Aligned_cols=71  Identities=14%  Similarity=0.231  Sum_probs=67.9

Q ss_pred             CCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCC
Q psy5036          62 VGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARD  132 (176)
Q Consensus        62 ~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~  132 (176)
                      +.||||+||||||++++|..|..+ |+++++||+++|  +|++||++||++|.++|++++++|..++++|+.+.
T Consensus         1 NaPKrP~say~~f~~~~r~~i~~~~p~~~~~ei~k~~~~~W~~ls~~eK~~y~~~a~~~k~~Y~~e~~~y~~k~   74 (79)
T d1hsma_           1 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKG   74 (79)
T ss_dssp             CCCCCCCCSHHHHHHHHHHHHHHHCTTCCTTTHHHHHHHHHHTSCSTTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            468999999999999999999999 999999999999  99999999999999999999999999999997654

>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: High mobility group protein 1, HMG1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=5.6e-20  Score=125.63  Aligned_cols=66  Identities=6%  Similarity=0.217  Sum_probs=62.2

Q ss_pred             CCCCCCchhhhhhhhhccchhhc-cC--CCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q psy5036          63 GSVNFICNFILIGPQGQTKPEAR-SG--NEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGW  128 (176)
Q Consensus        63 ~~KRPlNAFmLF~ke~R~kv~~e-P~--~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Y  128 (176)
                      +||||+||||||++++|..|..+ |+  +.+++|+++|  +|++||++||++|.++|++++++|..++++|
T Consensus         1 KPKrP~say~~f~~~~r~~~k~~~p~~~~~~~ei~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~Y   71 (71)
T d1ckta_           1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY   71 (71)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CcCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            47999999999999999999999 86  4568999999  9999999999999999999999999999988

>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: HMG-D
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.74  E-value=4.7e-20  Score=127.10  Aligned_cols=68  Identities=10%  Similarity=0.165  Sum_probs=64.3

Q ss_pred             CCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC
Q psy5036          62 VGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR  131 (176)
Q Consensus        62 ~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~  131 (176)
                      ++||||+||||||++++|..|+++ |++++.||+++|  +|++|+  ||++|+++|++++++|.+++++|+..
T Consensus         2 n~PKrP~say~lf~~~~r~~~k~~~p~~~~~eisk~l~~~Wk~~~--eK~~y~~~a~~~k~~y~~~~~~y~~~   72 (73)
T d1qrva_           2 DKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMK--DKSEWEAKAAKAKDDYDRAVKEFEAN   72 (73)
T ss_dssp             CSCCCCCCHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ccCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcChh--HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            578999999999999999999999 999999999999  999986  49999999999999999999999875

>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: NHP6a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=2.3e-19  Score=128.89  Aligned_cols=73  Identities=12%  Similarity=0.197  Sum_probs=68.6

Q ss_pred             CCCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCcc
Q psy5036          58 MSWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSA  130 (176)
Q Consensus        58 ~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~  130 (176)
                      ...+.+||||+||||||++++|..|+++ |++++.||++.|  +|++|+++||.+|.++|++++++|..++..|+.
T Consensus        15 ~k~p~~PKrP~saf~lF~~e~r~~ik~~~p~~~~~ei~k~l~~~W~~ls~~eK~~y~~~a~~~k~~y~~e~~~y~~   90 (93)
T d1lwma_          15 KKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYNA   90 (93)
T ss_dssp             CCCSSCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCCCHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3455789999999999999999999999 999999999999  999999999999999999999999999998864

>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.1e-19  Score=127.10  Aligned_cols=76  Identities=8%  Similarity=0.083  Sum_probs=70.8

Q ss_pred             CCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC-CCC
Q psy5036          59 SWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR-DNY  134 (176)
Q Consensus        59 ~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~-~n~  134 (176)
                      ..++.||||+||||||++++|..|..+ |+++++||+++|  +|+.||++||++|.++|++++++|..+++.|... ++.
T Consensus         6 k~p~~PKrP~say~lf~~~~r~~~~~~~p~~~~~ev~k~l~~~W~~ls~~eK~~y~~~a~~~~~~y~~~~~~y~~~~pe~   85 (91)
T d1k99a_           6 KHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDL   85 (91)
T ss_dssp             SSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGGCCCCC
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc
Confidence            455678999999999999999999999 999999999999  9999999999999999999999999999999876 444

>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=4.2e-19  Score=126.22  Aligned_cols=70  Identities=7%  Similarity=0.137  Sum_probs=63.9

Q ss_pred             CCCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q psy5036          58 MSWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPG  127 (176)
Q Consensus        58 ~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~  127 (176)
                      ......||||+||||||++++|.+|..+ |++++.||+++|  +|+.|+++||++|+++|++++++|.++.-.
T Consensus        15 ~~~~~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~W~~Ls~~eK~~Y~~~A~~~k~~y~~~~~~   87 (90)
T d1wgfa_          15 KGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSGP   87 (90)
T ss_dssp             SSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCSS
T ss_pred             CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4556789999999999999999999999 999999999999  999999999999999999999888765543

>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=4.1e-18  Score=123.13  Aligned_cols=69  Identities=9%  Similarity=0.148  Sum_probs=63.0

Q ss_pred             CCCCCCchhhhhhhhhccchhhccCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCC
Q psy5036          63 GSVNFICNFILIGPQGQTKPEARSGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARD  132 (176)
Q Consensus        63 ~~KRPlNAFmLF~ke~R~kv~~eP~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~  132 (176)
                      .+|||+||||||++++|..+.. +++++.||+++|  +|++|+++||++|.++|++++++|..+|+.|+...
T Consensus         8 p~KrP~~ay~~F~~e~r~~~~~-~~~~~~ei~k~~g~~Wk~ls~~eK~~Y~~~a~~~~~~y~~e~~~y~~~~   78 (101)
T d1v63a_           8 PKKPPMNGYQKFSQELLSNGEL-NHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSL   78 (101)
T ss_dssp             SCCCCSSSHHHHHHHHHHHCTT-TTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3689999999999999998754 456789999999  99999999999999999999999999999998764

>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=3.3e-17  Score=120.20  Aligned_cols=67  Identities=13%  Similarity=0.089  Sum_probs=61.4

Q ss_pred             CCCCCCchhhhhhhhhccchhhccCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCC
Q psy5036          63 GSVNFICNFILIGPQGQTKPEARSGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARD  132 (176)
Q Consensus        63 ~~KRPlNAFmLF~ke~R~kv~~eP~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~  132 (176)
                      .+|+|+||||||++++|.++   +++++.||+++|  +|++|+++||++|.++|++++++|..+|+.|....
T Consensus        17 p~K~P~~ay~lF~~~~r~~~---~~~~~~e~~k~ig~~W~~Ls~~eK~~Y~~~a~~~k~~Y~~~~~~y~~~~   85 (108)
T d1v64a_          17 PTKPPPNSYSLYCAELMANM---KDVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESL   85 (108)
T ss_dssp             CCCCCSSHHHHHHHHHHHHC---TTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCcHHHHHHHHHHHHc---cCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            35788999999999999765   678899999999  99999999999999999999999999999998753