Psyllid ID: psy503
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 333 | 2.2.26 [Sep-21-2011] | |||||||
| Q3TLP5 | 296 | Enoyl-CoA hydratase domai | yes | N/A | 0.753 | 0.847 | 0.444 | 1e-61 | |
| Q2TBT3 | 296 | Enoyl-CoA hydratase domai | yes | N/A | 0.816 | 0.918 | 0.423 | 4e-60 | |
| Q86YB7 | 292 | Enoyl-CoA hydratase domai | yes | N/A | 0.753 | 0.859 | 0.447 | 8e-60 | |
| Q54HG7 | 303 | Methylglutaconyl-CoA hydr | yes | N/A | 0.813 | 0.894 | 0.413 | 5e-55 | |
| Q9JLZ3 | 314 | Methylglutaconyl-CoA hydr | no | N/A | 0.858 | 0.910 | 0.414 | 9e-54 | |
| Q13825 | 339 | Methylglutaconyl-CoA hydr | no | N/A | 0.780 | 0.766 | 0.423 | 3e-53 | |
| O34893 | 260 | Putative enoyl-CoA hydrat | yes | N/A | 0.729 | 0.934 | 0.422 | 4e-51 | |
| A4YI89 | 259 | 3-hydroxypropionyl-coenzy | yes | N/A | 0.723 | 0.930 | 0.335 | 2e-35 | |
| P52046 | 261 | 3-hydroxybutyryl-CoA dehy | yes | N/A | 0.630 | 0.804 | 0.399 | 5e-34 | |
| P64016 | 257 | Probable enoyl-CoA hydrat | yes | N/A | 0.729 | 0.945 | 0.303 | 8e-29 |
| >sp|Q3TLP5|ECHD2_MOUSE Enoyl-CoA hydratase domain-containing protein 2, mitochondrial OS=Mus musculus GN=Echdc2 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 237 bits (604), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 127/286 (44%), Positives = 174/286 (60%), Gaps = 35/286 (12%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GI E+ MNRP ARNAL V E+L A+ +R D++VR +L RS VK VFCAGADLK R
Sbjct: 45 GITEILMNRPNARNALGNVFVSELLEALAQLREDQQVRVLLFRSAVKGVFCAGADLKERE 104
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
+++ ++ +FV LR + ++ + PVP +A +DG A GGGLE+ALACD+R+AAS+ MGL
Sbjct: 105 QMSDVEVGTFVQRLRGLMSEIAAFPVPTIAAMDGFALGGGLELALACDLRIAASSAVMGL 164
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
+ET ++PGAGGTQRLPR +G+ LAKELI+TGR ++ +A+ +GLVN QN NAA
Sbjct: 165 IETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLNGAQARELGLVNHAVAQNEEGNAA 224
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTE 286
Y +L +A++I PIAVR+ K +ID RG +
Sbjct: 225 YHRALALAQEILPQAPIAVRLGKVAID---RGMEVDIA---------------------- 259
Query: 287 NQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
SGM E +CY + I TQDR+EG+ +F K P + G
Sbjct: 260 ----------SGMAIEQMCYAQNIPTQDRLEGMAAFREKRAPKFVG 295
|
Mus musculus (taxid: 10090) |
| >sp|Q2TBT3|ECHD2_BOVIN Enoyl-CoA hydratase domain-containing protein 2, mitochondrial OS=Bos taurus GN=ECHDC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (590), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 131/309 (42%), Positives = 183/309 (59%), Gaps = 37/309 (11%)
Query: 24 STSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEV 83
S++ GR++ Q+ P + GI E+ MNRP ARNAL V ++L A+ +R D +V
Sbjct: 24 SSNPGAAGREI-QVCALAGPNQ-GIAEILMNRPSARNALGNVFVSQLLEALAQLREDRQV 81
Query: 84 RCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAY 143
R ++ RS VK VFCAGADLK R ++E ++ FV LR + ++ + P P +A +DG A
Sbjct: 82 RVLIFRSGVKGVFCAGADLKEREQMSEAEVGLFVQRLRGLMTEIAAFPAPTIAAMDGFAL 141
Query: 144 GGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203
GGGLE+ALACD+RVAAS+ MGL+ET ++PGAGGTQRLPR +G+ LAKELI+TGR +
Sbjct: 142 GGGLELALACDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLS 201
Query: 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRD 263
+A+++GLVN QN NAAY + +A++I PIAVR++K +ID RG +
Sbjct: 202 GAQAQALGLVNHAVAQNEEGNAAYHRARALAQEILPQAPIAVRLSKVAID---RGIEVDI 258
Query: 264 GQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFL 323
SGM EGICY + I T+DR+EG+ +F
Sbjct: 259 A--------------------------------SGMAIEGICYAQNIPTRDRLEGMAAFR 286
Query: 324 GKYKPVYKG 332
K P + G
Sbjct: 287 EKRLPRFVG 295
|
Bos taurus (taxid: 9913) |
| >sp|Q86YB7|ECHD2_HUMAN Enoyl-CoA hydratase domain-containing protein 2, mitochondrial OS=Homo sapiens GN=ECHDC2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 231 bits (588), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 128/286 (44%), Positives = 169/286 (59%), Gaps = 35/286 (12%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GI E+ MNRP ARNAL V E+L + +R D +VR +L RS VK VFCAGADLK R
Sbjct: 41 GITEILMNRPSARNALGNVFVSELLETLAQLREDRQVRVLLFRSGVKGVFCAGADLKERE 100
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
++E ++ FV LR + + + P P +A +DG A GGGLE+ALACD+RVAAS+ MGL
Sbjct: 101 QMSEAEVGVFVQRLRGLMNDIAAFPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGL 160
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
+ET ++PGAGGTQRLPR +G+ LAKELI+TGR + TEA +GLVN QN +AA
Sbjct: 161 IETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGTEAHVLGLVNHAVAQNEEGDAA 220
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTE 286
Y + +A++I PIAVR+ K +ID RGT+
Sbjct: 221 YQRARALAQEILPQAPIAVRLGKVAID---RGTEVDIA---------------------- 255
Query: 287 NQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
SGM EG+CY + I T+DR+EG+ +F K P + G
Sbjct: 256 ----------SGMAIEGMCYAQNIPTRDRLEGMAAFREKRTPKFVG 291
|
Homo sapiens (taxid: 9606) |
| >sp|Q54HG7|AUHM_DICDI Methylglutaconyl-CoA hydratase, mitochondrial OS=Dictyostelium discoideum GN=auh PE=3 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (546), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 131/317 (41%), Positives = 177/317 (55%), Gaps = 46/317 (14%)
Query: 23 YSTSVS-KEGRKLTQ------IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVE 75
+STS S K GRK T I+ E GI + NR +NAL L+ + + +
Sbjct: 25 FSTSSSLKFGRKFTTETQQECILERLEGENKGISVISFNRGHVKNALGKNLMNQFRSHLN 84
Query: 76 AIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVL 135
+R + R V++RSLV VFC+GADLK R +++ + FV +LR +LE++ +P +
Sbjct: 85 ELRFCPDTRVVIVRSLVDGVFCSGADLKERALMSQVEASQFVHSLRSSFTELETLQMPTI 144
Query: 136 AVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKEL 195
A ++G A GGG EM LACD RVA+ + +MGL ET LAIIPGAGGTQRLPR++GIP AKEL
Sbjct: 145 AAIEGVAVGGGTEMVLACDFRVASKSSKMGLPETGLAIIPGAGGTQRLPRLIGIPRAKEL 204
Query: 196 IYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGP 255
I+TG ++DS A IGLV T + A+ ++ IA+ I GPIA+RMAK++ID
Sbjct: 205 IFTGAILDSKRALEIGLVQYET----EKGEAFDKAIEIAKQIIPKGPIAIRMAKQAID-- 258
Query: 256 GRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDR 315
RG SGM E Y +VI T+DR
Sbjct: 259 -RGMNVDQA--------------------------------SGMIIEQASYAQVIPTKDR 285
Query: 316 VEGLKSFLGKYKPVYKG 332
+EGL +F K KP+YKG
Sbjct: 286 IEGLTAFKEKRKPIYKG 302
|
Catalyzes the conversion of 3-methylglutaconyl-CoA to 3-hydroxy-3-methylglutaryl-CoA. Dictyostelium discoideum (taxid: 44689) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 8 |
| >sp|Q9JLZ3|AUHM_MOUSE Methylglutaconyl-CoA hydratase, mitochondrial OS=Mus musculus GN=Auh PE=2 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (536), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 135/326 (41%), Positives = 191/326 (58%), Gaps = 40/326 (12%)
Query: 9 RLSPARVKVTKWPN--YSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATL 66
RL PA P YS+ V E + H E GIV L +NR +NAL+ L
Sbjct: 26 RLGPAAWARGTAPRRGYSSEVKTEDELR---VRHLEEENRGIVVLGINRAYGKNALSKNL 82
Query: 67 VEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ 126
++ + AV+A++ D++VR +++RS V +FCAGADLK R ++ ++ FVS +R +
Sbjct: 83 LKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRSVIND 142
Query: 127 LESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRI 186
+ ++PVP +A +DG A GGGLE+ALACDIRVAAS+ +MGLVETKLAIIPG GGTQRLPR
Sbjct: 143 IANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRA 202
Query: 187 VGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVR 246
+G+ LAKELI++ R++D EAK++GL++ + QN +AAY +L +A + GP+A+R
Sbjct: 203 IGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMR 262
Query: 247 MAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICY 306
+AK +I NQ E +G+ E CY
Sbjct: 263 VAKLAI----------------------------------NQGMEVD-LVTGLAIEEACY 287
Query: 307 DRVIRTQDRVEGLKSFLGKYKPVYKG 332
+ I T+DR+EGL +F K P YKG
Sbjct: 288 AQTISTKDRLEGLLAFKEKRPPRYKG 313
|
Catalyzes the conversion of 3-methylglutaconyl-CoA to 3-hydroxy-3-methylglutaryl-CoA. Has very low enoyl-CoA hydratase activity. Was originally identified as RNA-binding protein that binds in vitro to clustered 5'-AUUUA-3' motifs. Mus musculus (taxid: 10090) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 8 |
| >sp|Q13825|AUHM_HUMAN Methylglutaconyl-CoA hydratase, mitochondrial OS=Homo sapiens GN=AUH PE=1 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (531), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 125/295 (42%), Positives = 181/295 (61%), Gaps = 35/295 (11%)
Query: 38 IYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFC 97
+ H E GIV L +NR +N+L+ L++ + AV+A++ D++VR +++RS V +FC
Sbjct: 79 VRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFC 138
Query: 98 AGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRV 157
AGADLK R ++ ++ FVS +R + + ++PVP +A +DG A GGGLE+ALACDIRV
Sbjct: 139 AGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRV 198
Query: 158 AASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLT 217
AAS+ +MGLVETKLAIIPG GGTQRLPR +G+ LAKELI++ R++D EAK++GL++ +
Sbjct: 199 AASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVL 258
Query: 218 PQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGS 277
QN +AAY +L +A + GP+A+R+AK +I
Sbjct: 259 EQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAI------------------------- 293
Query: 278 KGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
NQ E +G+ E CY + I T+DR+EGL +F K P YKG
Sbjct: 294 ---------NQGMEVD-LVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYKG 338
|
Catalyzes the conversion of 3-methylglutaconyl-CoA to 3-hydroxy-3-methylglutaryl-CoA. Has very low enoyl-CoA hydratase activity. Was originally identified as RNA-binding protein that binds in vitro to clustered 5'-AUUUA-3' motifs. Homo sapiens (taxid: 9606) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 8 |
| >sp|O34893|YNGF_BACSU Putative enoyl-CoA hydratase/isomerase YngF OS=Bacillus subtilis (strain 168) GN=yngF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 202 bits (513), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 120/284 (42%), Positives = 164/284 (57%), Gaps = 41/284 (14%)
Query: 51 LCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE 110
+ +NRPQA NAL+A ++ + ++ I + +RCV+L + FCAGADLK R+ L E
Sbjct: 17 ITLNRPQAANALSAEMLRNLQMIIQEIEFNSNIRCVILTGTGEKAFCAGADLKERIKLKE 76
Query: 111 DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETK 170
DQ+ VS ++ L+++P PV+A ++GSA GGGLE+ALACD+R+A +GL ET
Sbjct: 77 DQVLESVSLIQRTAALLDALPQPVIAAINGSALGGGLELALACDLRIATEAAVLGLPETG 136
Query: 171 LAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLT-PQNPNQNAAYLA 229
LAIIPGAGGTQRLPR++G AKE IYTGR V + EAK IGLV +T P + A LA
Sbjct: 137 LAIIPGAGGTQRLPRLIGRGKAKEFIYTGRRVTAHEAKEIGLVEHVTAPCDLMPKAEELA 196
Query: 230 SLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQN 289
+ I+ NGPIAVR AK +I+ KG E
Sbjct: 197 A-----AISANGPIAVRQAKFAIN-----------------------------KGLETD- 221
Query: 290 REFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333
+G+ E Y++ I T+DR EGL++F K + VYKG+
Sbjct: 222 -----LATGLAIEQKAYEQTIPTKDRREGLQAFQEKRRAVYKGI 260
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|A4YI89|HPCD_METS5 3-hydroxypropionyl-coenzyme A dehydratase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=Msed_2001 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/283 (33%), Positives = 144/283 (50%), Gaps = 42/283 (14%)
Query: 51 LCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE 110
+ +NRP NALNA L+EE+ AV D E+R +++ K FCAGAD+ L
Sbjct: 17 ITLNRPDKLNALNAKLLEELDRAVSQAESDPEIRVIIITGKGK-AFCAGADITQFNQLTP 75
Query: 111 DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETK 170
+ F R + ++E++ P +A+++G A GGGLE+ALACDIR+AA ++GL E
Sbjct: 76 AEAWKFSKKGREIMDKIEALSKPTIAMINGYALGGGLELALACDIRIAAEEAQLGLPEIN 135
Query: 171 LAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP-QNPNQNAAYLA 229
L I PG GGTQRL R++G A E++ TG + +A+ GLVN + P N Q
Sbjct: 136 LGIYPGYGGTQRLTRVIGKGRALEMMMTGDRIPGKDAEKYGLVNRVVPLANLEQE----- 190
Query: 230 SLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQN 289
+ ++AE IA PI++ + K ++ + SP
Sbjct: 191 TRKLAEKIAKKSPISLALIKEVVN-----------RGLDSP------------------- 220
Query: 290 REFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
SG+ E + + V T+D+ EG+ +FL K +P +KG
Sbjct: 221 -----LLSGLALESVGWGVVFSTEDKKEGVSAFLEKREPTFKG 258
|
Plays a role in autotrophic carbon fixation via the 3-hydroxypropionate/4-hydroxybutyrate cycle. Catalyzes the reversible dehydration of 3-hydroxypropionyl-CoA to form acryloyl-CoA, and the reversible dehydration of (S)-3-hydroxybutyryl-CoA to form crotonyl-CoA. Inactive towards (R)-3-hydroxybutyryl-CoA. Metallosphaera sedula (strain ATCC 51363 / DSM 5348) (taxid: 399549) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 EC: 6 |
| >sp|P52046|CRT_CLOAB 3-hydroxybutyryl-CoA dehydratase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=crt PE=3 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (365), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 129/218 (59%), Gaps = 8/218 (3%)
Query: 44 ERPGIVELC-MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL 102
E+ G V + +NRP+A NALN+ ++E+ + I D EV V+L + F AGAD+
Sbjct: 9 EKEGKVAVVTINRPKALNALNSDTLKEMDYVIGEIENDSEVLAVILTGAGEKSFVAGADI 68
Query: 103 KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
+N + R F + +LE + PV+A ++G A GGG E+A++CDIR+A+SN
Sbjct: 69 SEMKEMNTIEGRKFGILGNKVFRRLELLEKPVIAAVNGFALGGGCEIAMSCDIRIASSNA 128
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPN 222
R G E L I PG GGTQRL R+VG+ +AK+LI+T + + + EA IGLVN + +
Sbjct: 129 RFGQPEVGLGITPGFGGTQRLSRLVGMGMAKQLIFTAQNIKADEALRIGLVNKVVEPSEL 188
Query: 223 QNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQ 260
N A IA I N P+AV+++K++I+ RG Q
Sbjct: 189 MNTAK----EIANKIVSNAPVAVKLSKQAIN---RGMQ 219
|
Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 EC: 5 |
| >sp|P64016|ECHA8_MYCTU Probable enoyl-CoA hydratase echA8 OS=Mycobacterium tuberculosis GN=echA8 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 127 bits (320), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 92/303 (30%), Positives = 142/303 (46%), Gaps = 60/303 (19%)
Query: 36 QIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDV 95
+ I +R GI+ L NRPQA NALN+ ++ E+ +A + D ++ +++ K
Sbjct: 4 ETILVERDQRVGIITL--NRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAK-A 60
Query: 96 FCAGADLKHR--LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALAC 153
F AGAD+K LT + F +T +L ++ P +A + G A GGG E+A+ C
Sbjct: 61 FAAGADIKEMADLTFADAFTADFFATW----GKLAAVRTPTIAAVAGYALGGGCELAMMC 116
Query: 154 DIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLV 213
D+ +AA + G E KL ++PG GG+QRL R +G A +LI TGR +D+ EA+ GLV
Sbjct: 117 DVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLV 176
Query: 214 NTLTPQNPNQNAAYLASLR-IAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGR 272
+ + P + L R A I+ A RMAK ++
Sbjct: 177 SRVVPADD-----LLTEARATATTISQMSASAARMAKEAV-------------------- 211
Query: 273 DGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDR-----VIRTQDRVEGLKSFLGKYK 327
NR F+ S EG+ Y+R T+D+ EG+ +F+ K
Sbjct: 212 ----------------NRAFESSLS----EGLLYERRLFHSAFATEDQSEGMAAFIEKRA 251
Query: 328 PVY 330
P +
Sbjct: 252 PQF 254
|
Could possibly oxidize fatty acids using specific components. Mycobacterium tuberculosis (taxid: 1773) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 333 | ||||||
| 307197880 | 876 | Methylglutaconyl-CoA hydratase, mitochon | 0.753 | 0.286 | 0.475 | 2e-68 | |
| 328793715 | 300 | PREDICTED: enoyl-CoA hydratase domain-co | 0.756 | 0.84 | 0.480 | 7e-67 | |
| 380028958 | 277 | PREDICTED: methylglutaconyl-CoA hydratas | 0.756 | 0.909 | 0.477 | 8e-67 | |
| 195058271 | 298 | GH22640 [Drosophila grimshawi] gi|193899 | 0.762 | 0.852 | 0.474 | 2e-66 | |
| 194756520 | 299 | GF11465 [Drosophila ananassae] gi|190621 | 0.759 | 0.846 | 0.475 | 8e-66 | |
| 350407034 | 300 | PREDICTED: enoyl-CoA hydratase domain-co | 0.756 | 0.84 | 0.484 | 1e-65 | |
| 195431748 | 302 | GK15915 [Drosophila willistoni] gi|19415 | 0.753 | 0.831 | 0.479 | 1e-65 | |
| 332030222 | 302 | Enoyl-CoA hydratase domain-containing pr | 0.753 | 0.831 | 0.461 | 3e-65 | |
| 195124263 | 301 | GI21154 [Drosophila mojavensis] gi|19391 | 0.762 | 0.843 | 0.467 | 7e-65 | |
| 156554542 | 301 | PREDICTED: enoyl-CoA hydratase domain-co | 0.870 | 0.963 | 0.445 | 9e-65 |
| >gi|307197880|gb|EFN78979.1| Methylglutaconyl-CoA hydratase, mitochondrial [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 136/286 (47%), Positives = 186/286 (65%), Gaps = 35/286 (12%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GI + +NRP ARN+ +V +++ + +R +E++R ++LRSLV VFCAGADL+ RL
Sbjct: 625 GIAVIGLNRPAARNSFGKGMVSQLIETLATVRQNEKLRVLILRSLVPKVFCAGADLRERL 684
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
T++ ++ FVS+LR M + ++P PV++ +DG A GGGLE+ALA DIRVAAS +MGL
Sbjct: 685 TMDSTEVSRFVSSLRSMISNVATLPTPVISAIDGVALGGGLELALATDIRVAASEAKMGL 744
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
VET+LAIIPG GGTQRLPRIVG+ AKELIYT R++D +A IGLVN + PQN + NAA
Sbjct: 745 VETRLAIIPGGGGTQRLPRIVGLAKAKELIYTARILDGEQAWQIGLVNQVVPQNKSGNAA 804
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTE 286
Y A+L IA +I NGPI V+MAK +I S+GTE
Sbjct: 805 YEAALSIAREILPNGPIGVKMAKVAI-----------------------------SEGTE 835
Query: 287 NQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
++ G+E EG CY +++ T+DR+EGL +F K PVY+G
Sbjct: 836 VSLKD------GLEIEGQCYGKIVDTKDRIEGLAAFAAKRVPVYQG 875
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328793715|ref|XP_393002.3| PREDICTED: enoyl-CoA hydratase domain-containing protein 2, mitochondrial-like isoform 1 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 260 bits (664), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 138/287 (48%), Positives = 187/287 (65%), Gaps = 35/287 (12%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GIV L +NRP A NAL TL ++ A+ +IR D ++R +++RSLV +FCAGADL+ R
Sbjct: 49 GIVVLGLNRPTASNALGKTLTSQLNDAISSIREDTKLRVLIIRSLVPKIFCAGADLRERR 108
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
++ +I FVS LR +T +E++P PV++ +DG+A GGGLE+ALA DIRVAAS+ +MGL
Sbjct: 109 RMDNSEILKFVSFLRSITNSIETLPTPVISAIDGTALGGGLELALATDIRVAASDSKMGL 168
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
VETK AIIPGAGGTQRLPRI+GI AKELIYT R+VD +A IGL+N + PQN + +AA
Sbjct: 169 VETKWAIIPGAGGTQRLPRIIGIAKAKELIYTARIVDGEQAMEIGLINQVVPQNKSGDAA 228
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTE 286
Y +L IA +I NGPI V+MAK ++ SKG + T+
Sbjct: 229 YQTALTIAREILPNGPIGVKMAKIAM------------------------SKGLQVSITD 264
Query: 287 NQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333
G+E E CY +V+ T+DR+EGL +F+ K PVY+G+
Sbjct: 265 -----------GLEVEKQCYSKVVDTKDRIEGLAAFITKRIPVYQGM 300
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380028958|ref|XP_003698150.1| PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 260 bits (664), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 137/287 (47%), Positives = 187/287 (65%), Gaps = 35/287 (12%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GIV L +NRP A NAL TL ++ A+ +IR D ++R +++RSLV +FCAGADL+ R
Sbjct: 26 GIVVLGLNRPTASNALGKTLTSQLNDAISSIREDTKLRVLIIRSLVPKIFCAGADLRERR 85
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
++ +I FVS LR +T +E++P PV++ +DG+A GGGLE+ALA DIRVA S+ +MGL
Sbjct: 86 RMDNSEILKFVSFLRSITNSIETLPTPVISAIDGTALGGGLELALATDIRVATSDSKMGL 145
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
VETK AIIPGAGGTQRLPRI+GI AKELIYT R+VD +A IGL+N + PQN + +AA
Sbjct: 146 VETKWAIIPGAGGTQRLPRIIGIAKAKELIYTARIVDGEQAMEIGLINQVVPQNKSGDAA 205
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTE 286
Y +L IA +I NGPI V+MAK ++ SKG + T+
Sbjct: 206 YQTALTIAREILPNGPIGVKMAKTAM------------------------SKGLQVSITD 241
Query: 287 NQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333
G+E E CY++V+ T+DR+EGL +F+ K PVY+G+
Sbjct: 242 -----------GLEVEKQCYNKVVDTKDRIEGLAAFITKRIPVYQGM 277
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195058271|ref|XP_001995420.1| GH22640 [Drosophila grimshawi] gi|193899626|gb|EDV98492.1| GH22640 [Drosophila grimshawi] | Back alignment and taxonomy information |
|---|
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 137/289 (47%), Positives = 184/289 (63%), Gaps = 35/289 (12%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
++ GI L +NRP A+NA + LV +E I+ D + R V+LRSL +FCAGADLK
Sbjct: 44 KQAGITVLGLNRPAAKNAFSRGLVNTFSDILEEIKRDNDSRVVVLRSLTPGIFCAGADLK 103
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
R + ++ + FV+ LR + +E +P+PV+A LDG A GGGLEMALACDIR AA+N +
Sbjct: 104 ERKGMTTEETKEFVNQLRGLLVCIEQLPMPVIAALDGVALGGGLEMALACDIRTAAANAK 163
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
MGLVET+LAIIPGAGGTQRLPRI+ LAKELI+T R+++ TEAK +GLVN + PQN +
Sbjct: 164 MGLVETRLAIIPGAGGTQRLPRILSPALAKELIFTARVLNGTEAKDLGLVNHVVPQNETK 223
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283
+AAY ++++AE+I NGP+ VRMAK +ID +G Q
Sbjct: 224 DAAYQQAVKLAEEILPNGPVGVRMAKLAID---KGMQV---------------------- 258
Query: 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+G E +CYD+VI T+DR+EGL +F K KP+YKG
Sbjct: 259 ----------DLSTGYSIEEVCYDQVIPTKDRLEGLAAFAEKRKPIYKG 297
|
Source: Drosophila grimshawi Species: Drosophila grimshawi Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194756520|ref|XP_001960525.1| GF11465 [Drosophila ananassae] gi|190621823|gb|EDV37347.1| GF11465 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Score = 256 bits (655), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 137/288 (47%), Positives = 178/288 (61%), Gaps = 35/288 (12%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R GI + +NRP A+N+ + +VE +E ++ D R V+LRSL +FCAGADLK
Sbjct: 46 RKGISVIGLNRPAAKNSFSRGMVETFTDVLEDLKSDNGSRVVVLRSLTPGIFCAGADLKE 105
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
R + ++ FV TLR + +E +P+PV+A LDG+A GGGLEMALACDIR AASN +M
Sbjct: 106 RKGMTPEEATEFVKTLRSLLISIEQLPMPVIAALDGAALGGGLEMALACDIRTAASNTKM 165
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
GLVET+LAIIPGAGGTQRLPRI+ LAKELI+T R+ D EAK +GLVN + QN ++
Sbjct: 166 GLVETRLAIIPGAGGTQRLPRILSPALAKELIFTARVFDGKEAKELGLVNHVVEQNETKD 225
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
AAY +L++AE+I NGP+ VRMAK +ID +G Q
Sbjct: 226 AAYQQALKLAEEILPNGPVGVRMAKLAID---KGMQV----------------------- 259
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+G E ICY +VI T+DR+EGL +F K PVYKG
Sbjct: 260 ---------DLSTGYSIEEICYSQVIPTKDRLEGLAAFAEKRTPVYKG 298
|
Source: Drosophila ananassae Species: Drosophila ananassae Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350407034|ref|XP_003487962.1| PREDICTED: enoyl-CoA hydratase domain-containing protein 2, mitochondrial-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 139/287 (48%), Positives = 183/287 (63%), Gaps = 35/287 (12%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GIV L +NRP NAL T+ ++ A+ +IR D ++R +++RSLV VFCAGADL+ R
Sbjct: 49 GIVVLGLNRPTVCNALGKTITSQLHDAISSIREDSKLRVLIIRSLVPKVFCAGADLRERA 108
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
++ +I FVS LR MT +E++P PV++ +DG+A GGGLE+ALA DIRVAAS +MGL
Sbjct: 109 KMDTAEISKFVSFLRNMTYDIETLPTPVISAIDGAALGGGLEIALATDIRVAASEAKMGL 168
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
VETK AIIPGAGGTQRLPRI+G AKELIYT R+VD +A IGLVN + PQN + +AA
Sbjct: 169 VETKWAIIPGAGGTQRLPRIIGSARAKELIYTARIVDGEQAMKIGLVNEVVPQNKSGDAA 228
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTE 286
Y A+L IA +I NGPI V+MAK +I SKG + T+
Sbjct: 229 YQAALTIAREILPNGPIGVKMAKTAI------------------------SKGLQMPITD 264
Query: 287 NQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333
G E E CY+ V+ ++DR+EGL +F K P+Y+GV
Sbjct: 265 -----------GFEIEKQCYNTVVDSKDRIEGLAAFGTKRMPIYQGV 300
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195431748|ref|XP_002063890.1| GK15915 [Drosophila willistoni] gi|194159975|gb|EDW74876.1| GK15915 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 137/286 (47%), Positives = 179/286 (62%), Gaps = 35/286 (12%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GI L +NRP A+N+ + +VE +E I+ D R V+LRSL +FCAGADLK R
Sbjct: 51 GITVLGLNRPAAKNSFSRGMVETFGDILEDIKRDNGSRVVVLRSLSPGIFCAGADLKERK 110
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
+ D+ FV+ LR + +E +P+PV+A LDG+A GGGLEMALACDIR A+SN +MGL
Sbjct: 111 GMTTDETGEFVTKLRSLLVSIEQLPMPVIAALDGAALGGGLEMALACDIRTASSNAKMGL 170
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
VET+LAIIPGAGGTQRLPRI+ LAKELI+T RL+D EAK +GLVN + QN ++AA
Sbjct: 171 VETRLAIIPGAGGTQRLPRILSPALAKELIFTARLLDGAEAKELGLVNHVVQQNETKDAA 230
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTE 286
Y ++++AE+I NGP+ VRMAK +ID +G Q
Sbjct: 231 YQKAIKLAEEILPNGPVGVRMAKLAID---KGMQV------------------------- 262
Query: 287 NQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+G E +CY +VI T+DR+EGL +F K KPVYKG
Sbjct: 263 -------DLSTGYSIEEVCYSQVIPTKDRLEGLAAFAEKRKPVYKG 301
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332030222|gb|EGI70005.1| Enoyl-CoA hydratase domain-containing protein 2, mitochondrial [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 132/286 (46%), Positives = 182/286 (63%), Gaps = 35/286 (12%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GI L +NRP ARN+ TL+ ++ A+ +IR + ++R +++RSLV VFCAGADL+ R
Sbjct: 51 GIAVLGLNRPAARNSFGKTLISQLNEALTSIRQNNKLRVLIVRSLVPKVFCAGADLRERF 110
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
++ ++ FVS+LR + +E++P PV++ +DG+A GGGLE+ALA DIRVA+S +MGL
Sbjct: 111 KMDNSEVLRFVSSLRELMTDVETLPTPVISAIDGTALGGGLELALASDIRVASSEAKMGL 170
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
VETKLAIIPGAGGTQRLPRI+G+ AKELIYT R++D +A IGLVN + QN +AA
Sbjct: 171 VETKLAIIPGAGGTQRLPRIIGVAKAKELIYTARILDGEQALQIGLVNEVVSQNKIGDAA 230
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTE 286
Y +L IA +I NGPI VR+AK +I SKG E
Sbjct: 231 YQMALSIAREILPNGPIGVRLAKVAI-----------------------------SKGME 261
Query: 287 NQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+ GME E CY +++ T+DR+EGL +F K P+Y+G
Sbjct: 262 VSQED------GMEIEEQCYSKIVNTKDRIEGLAAFAAKRVPIYQG 301
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195124263|ref|XP_002006613.1| GI21154 [Drosophila mojavensis] gi|193911681|gb|EDW10548.1| GI21154 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 253 bits (647), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 135/289 (46%), Positives = 181/289 (62%), Gaps = 35/289 (12%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
++ GI L +NRP A+NA + +V ++ I+ D R V+LRSL +FCAGADLK
Sbjct: 47 KQQGITVLGLNRPAAKNAFSRGMVNTFTDILQDIKRDNGSRVVVLRSLTPGIFCAGADLK 106
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
R + ++ + FV+ LR + +E +P+PV+A LDG+A GGGLEMALACDIR AASN +
Sbjct: 107 ERKGMTAEETKEFVTQLRSLLISIEQLPMPVIAALDGAALGGGLEMALACDIRTAASNAK 166
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
MGLVET+LAIIPGAGGTQRLPRI+ LAKELI+T R++D EAK +GLVN + QN +
Sbjct: 167 MGLVETRLAIIPGAGGTQRLPRILSPALAKELIFTARVLDGAEAKQLGLVNHVVQQNDTK 226
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283
+AAY ++++AE+I NGP+ VRMAK +ID +G Q
Sbjct: 227 DAAYQQAVKLAEEILPNGPVGVRMAKLAID---KGMQV---------------------- 261
Query: 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+G E +CY +VI T+DR+EGL +F K KPVYKG
Sbjct: 262 ----------DLSTGYSIEEVCYAQVIPTKDRLEGLAAFAEKRKPVYKG 300
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156554542|ref|XP_001605063.1| PREDICTED: enoyl-CoA hydratase domain-containing protein 2, mitochondrial [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 253 bits (646), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 152/341 (44%), Positives = 198/341 (58%), Gaps = 51/341 (14%)
Query: 4 MKFILRLSPARVKVTKWPNYSTSVSKEGRKLTQIIYHNSPERP-----------GIVELC 52
M F++R RV V+ S SV K+ Q+ +SP + GI L
Sbjct: 1 MVFLVR----RVSVSLLKAASVSVRALSTKV-QLKEDSSPGKEIVLKYLDGKDNGIAVLG 55
Query: 53 MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ 112
+NRP+ARNA LV ++ AV I D++VR ++LRSLV VFCAGADL+ R + +
Sbjct: 56 LNRPEARNAFGKNLVSQLSDAVSTIEQDKKVRVLILRSLVPKVFCAGADLRERSKMEPQE 115
Query: 113 IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLA 172
+ +FVS+LR + LE++ PV++ LDG A GGGLEMALA DIR A+ +MGLVETKLA
Sbjct: 116 VANFVSSLRDLMRDLEALSAPVISALDGVALGGGLEMALASDIRTASVEAKMGLVETKLA 175
Query: 173 IIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLR 232
IIPGAGGTQRLPRIVG LAKELIYT R++D EA IGLVN + QN +AAY A+L
Sbjct: 176 IIPGAGGTQRLPRIVGPALAKELIYTARILDGIEAHKIGLVNRVVAQNKEGDAAYQAALH 235
Query: 233 IAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREF 292
IA +I NGPI V++AK +I SKG E +
Sbjct: 236 IAREILPNGPIGVKLAKVAI-----------------------------SKGIEVSIDD- 265
Query: 293 QGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333
G E E CY +++ T+DR+EGL +F K PVY+G+
Sbjct: 266 -----GFEIEKQCYAQLLDTEDRIEGLAAFASKRVPVYRGL 301
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 333 | ||||||
| FB|FBgn0033761 | 299 | CG8778 [Drosophila melanogaste | 0.627 | 0.698 | 0.540 | 1.3e-63 | |
| ZFIN|ZDB-GENE-040801-95 | 325 | auh "AU RNA binding protein/en | 0.684 | 0.701 | 0.506 | 1.1e-62 | |
| UNIPROTKB|J9P2R5 | 340 | AUH "Uncharacterized protein" | 0.684 | 0.670 | 0.484 | 4.2e-61 | |
| MGI|MGI:1338011 | 314 | Auh "AU RNA binding protein/en | 0.726 | 0.770 | 0.469 | 8.8e-61 | |
| MGI|MGI:1289238 | 296 | Echdc2 "enoyl Coenzyme A hydra | 0.621 | 0.699 | 0.521 | 1.8e-60 | |
| UNIPROTKB|F1NSS6 | 253 | ECHDC2 "Uncharacterized protei | 0.618 | 0.814 | 0.528 | 2.9e-60 | |
| RGD|1306087 | 313 | Auh "AU RNA binding protein/en | 0.684 | 0.728 | 0.476 | 2.9e-60 | |
| UNIPROTKB|Q13825 | 339 | AUH "Methylglutaconyl-CoA hydr | 0.648 | 0.637 | 0.486 | 4.8e-60 | |
| UNIPROTKB|Q2TBT3 | 296 | ECHDC2 "Enoyl-CoA hydratase do | 0.684 | 0.770 | 0.482 | 9.9e-60 | |
| UNIPROTKB|F1S750 | 252 | ECHDC2 "Uncharacterized protei | 0.621 | 0.821 | 0.516 | 2e-59 |
| FB|FBgn0033761 CG8778 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 561 (202.5 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 113/209 (54%), Positives = 149/209 (71%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R GI + +NRP A+N+ + +VE +E I+ D R V+LRSL +FCAGADLK
Sbjct: 46 RQGISVIGLNRPAAKNSFSRGMVETFNDVLEDIKKDNGSRVVVLRSLSPGIFCAGADLKE 105
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
R + ++ FV LR + +E +P+PV+A +DG+A GGGLEMALACDIR AAS+ +M
Sbjct: 106 RKGMTPEEATEFVKELRGLLIAIEQLPMPVIAAVDGAALGGGLEMALACDIRTAASDTKM 165
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
GLVET+LAIIPGAGGTQRLPRI+ LAKELI+T R+ + EAK +GLVN + QN Q+
Sbjct: 166 GLVETRLAIIPGAGGTQRLPRILSPALAKELIFTARVFNGAEAKDLGLVNHVVKQNETQD 225
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSID 253
AAY +L++AE+I NGP+ VRMAK +ID
Sbjct: 226 AAYQQALKLAEEILPNGPVGVRMAKLAID 254
|
|
| ZFIN|ZDB-GENE-040801-95 auh "AU RNA binding protein/enoyl-Coenzyme A hydratase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 573 (206.8 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 117/231 (50%), Positives = 165/231 (71%)
Query: 23 YSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEE 82
YS+ V+ G L I+ + + GIV + +NRP+A+NA++ LV + A+E+++ D
Sbjct: 53 YSSEVNS-GDDL--IVRYLDGDDSGIVVMGINRPEAKNAISKNLVSMMSEALESMKTDNT 109
Query: 83 VRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSA 142
VR V+L S+V +FCAGADLK R + + ++ FV+ R + +L ++P+P +A +DG+A
Sbjct: 110 VRTVILCSMVPGIFCAGADLKERAKMQQSEVGPFVTKARTLISELGALPMPTIAAIDGAA 169
Query: 143 YGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV 202
GGGLEMALACDIRVAA++ +MGLVETKLAIIPGAGGTQRLPR VG+ +AKELI+ R++
Sbjct: 170 LGGGLEMALACDIRVAANSAKMGLVETKLAIIPGAGGTQRLPRTVGVSIAKELIFAARVI 229
Query: 203 DSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSID 253
+ EAKS+GLVN QN +AAYL +L +A + GPIAVRMAK +I+
Sbjct: 230 NGEEAKSLGLVNHAVEQNKGGDAAYLRALDLAREFIPQGPIAVRMAKLAIN 280
|
|
| UNIPROTKB|J9P2R5 AUH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 559 (201.8 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
Identities = 112/231 (48%), Positives = 164/231 (70%)
Query: 23 YSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEE 82
YS+ V E ++ Y R GIV L +NR A+N + +LV+ + AV+A++ D++
Sbjct: 68 YSSEVKTEDE--LRVRYLEEENR-GIVVLGINRAYAKNTFSKSLVKMLSKAVDALKSDKK 124
Query: 83 VRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSA 142
VR +++RS V +FCAGADLK R+ +N ++ FVS +R + ++ ++PVP +A +DG A
Sbjct: 125 VRTIIVRSEVPGIFCAGADLKERVKMNPSEVGPFVSKIRAVIDEIANLPVPTIAAIDGLA 184
Query: 143 YGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV 202
GGGLE+ALACDIRVAAS+ +MGLVETKLAIIPG GGTQRLPR +G+ LAKELI++ R++
Sbjct: 185 LGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVL 244
Query: 203 DSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSID 253
D EAK++GL++ + QN +AAY +L +A + GP+AVR+AK +I+
Sbjct: 245 DGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAVRVAKLAIN 295
|
|
| MGI|MGI:1338011 Auh "AU RNA binding protein/enoyl-coenzyme A hydratase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 555 (200.4 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
Identities = 116/247 (46%), Positives = 168/247 (68%)
Query: 9 RLSPARVKVTKWPN--YSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATL 66
RL PA P YS+ V E +L + H E GIV L +NR +NAL+ L
Sbjct: 26 RLGPAAWARGTAPRRGYSSEVKTED-ELR--VRHLEEENRGIVVLGINRAYGKNALSKNL 82
Query: 67 VEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ 126
++ + AV+A++ D++VR +++RS V +FCAGADLK R ++ ++ FVS +R +
Sbjct: 83 LKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRSVIND 142
Query: 127 LESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRI 186
+ ++PVP +A +DG A GGGLE+ALACDIRVAAS+ +MGLVETKLAIIPG GGTQRLPR
Sbjct: 143 IANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRA 202
Query: 187 VGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVR 246
+G+ LAKELI++ R++D EAK++GL++ + QN +AAY +L +A + GP+A+R
Sbjct: 203 IGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMR 262
Query: 247 MAKRSID 253
+AK +I+
Sbjct: 263 VAKLAIN 269
|
|
| MGI|MGI:1289238 Echdc2 "enoyl Coenzyme A hydratase domain containing 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 557 (201.1 bits), Expect = 1.8e-60, Sum P(2) = 1.8e-60
Identities = 108/207 (52%), Positives = 148/207 (71%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GI E+ MNRP ARNAL V E+L A+ +R D++VR +L RS VK VFCAGADLK R
Sbjct: 45 GITEILMNRPNARNALGNVFVSELLEALAQLREDQQVRVLLFRSAVKGVFCAGADLKERE 104
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
+++ ++ +FV LR + ++ + PVP +A +DG A GGGLE+ALACD+R+AAS+ MGL
Sbjct: 105 QMSDVEVGTFVQRLRGLMSEIAAFPVPTIAAMDGFALGGGLELALACDLRIAASSAVMGL 164
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
+ET ++PGAGGTQRLPR +G+ LAKELI+TGR ++ +A+ +GLVN QN NAA
Sbjct: 165 IETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLNGAQARELGLVNHAVAQNEEGNAA 224
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSID 253
Y +L +A++I PIAVR+ K +ID
Sbjct: 225 YHRALALAQEILPQAPIAVRLGKVAID 251
|
|
| UNIPROTKB|F1NSS6 ECHDC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 555 (200.4 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 110/208 (52%), Positives = 151/208 (72%)
Query: 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCA--GADLKHR 105
I E+ MNRP ARN+L V+E+ +A+E +R DE+VR V+ +S VK VFCA GADLK R
Sbjct: 1 IAEILMNRPHARNSLGKVFVDELFSALEQLRFDEKVRVVVFKSKVKGVFCADLGADLKER 60
Query: 106 LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
+++ ++ FV LR + ++ ++PVP +A +DG A GGGLE+ALACD+RVAAS+ +MG
Sbjct: 61 EKMDDAEVGHFVKRLRNLMDEIAALPVPTIAAIDGYALGGGLELALACDLRVAASSAKMG 120
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNA 225
L+ET ++PGAGGTQRLPR VG+ LAKELI+TGR +D EA S+GLVN PQN +A
Sbjct: 121 LIETTRGLLPGAGGTQRLPRCVGVGLAKELIFTGRQIDGQEAFSMGLVNHTVPQNEEGDA 180
Query: 226 AYLASLRIAEDIAHNGPIAVRMAKRSID 253
AY +L +A++I PIAV+M K +I+
Sbjct: 181 AYQRALTLAKEILPQAPIAVKMGKLAIN 208
|
|
| RGD|1306087 Auh "AU RNA binding protein/enoyl-CoA hydratase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 550 (198.7 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 110/231 (47%), Positives = 163/231 (70%)
Query: 23 YSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEE 82
YS+ V E +L + H E GIV L +NR +N+L+ L++ + AV+A++ D++
Sbjct: 41 YSSEVKTED-ELR--VRHLEEENRGIVVLGINRAYGKNSLSKNLLKMLSKAVDALKSDKK 97
Query: 83 VRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSA 142
VR +++RS V +FCAGADLK R ++ ++ FVS +R + + ++PVP +A +DG A
Sbjct: 98 VRTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLA 157
Query: 143 YGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV 202
GGGLE+ALACDIRVAAS+ +MGLVETKLAIIPG GGTQRLPR +G+ LAKELI++ R++
Sbjct: 158 LGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMALAKELIFSARVL 217
Query: 203 DSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSID 253
D EAK++GL++ + QN +AAY +L +A + GP+A+R+AK +I+
Sbjct: 218 DGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAIN 268
|
|
| UNIPROTKB|Q13825 AUH "Methylglutaconyl-CoA hydratase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 549 (198.3 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
Identities = 105/216 (48%), Positives = 156/216 (72%)
Query: 38 IYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFC 97
+ H E GIV L +NR +N+L+ L++ + AV+A++ D++VR +++RS V +FC
Sbjct: 79 VRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFC 138
Query: 98 AGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRV 157
AGADLK R ++ ++ FVS +R + + ++PVP +A +DG A GGGLE+ALACDIRV
Sbjct: 139 AGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRV 198
Query: 158 AASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLT 217
AAS+ +MGLVETKLAIIPG GGTQRLPR +G+ LAKELI++ R++D EAK++GL++ +
Sbjct: 199 AASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVL 258
Query: 218 PQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSID 253
QN +AAY +L +A + GP+A+R+AK +I+
Sbjct: 259 EQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAIN 294
|
|
| UNIPROTKB|Q2TBT3 ECHDC2 "Enoyl-CoA hydratase domain-containing protein 2, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 545 (196.9 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
Identities = 111/230 (48%), Positives = 156/230 (67%)
Query: 24 STSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEV 83
S++ GR++ Q+ P + GI E+ MNRP ARNAL V ++L A+ +R D +V
Sbjct: 24 SSNPGAAGREI-QVCALAGPNQ-GIAEILMNRPSARNALGNVFVSQLLEALAQLREDRQV 81
Query: 84 RCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAY 143
R ++ RS VK VFCAGADLK R ++E ++ FV LR + ++ + P P +A +DG A
Sbjct: 82 RVLIFRSGVKGVFCAGADLKEREQMSEAEVGLFVQRLRGLMTEIAAFPAPTIAAMDGFAL 141
Query: 144 GGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203
GGGLE+ALACD+RVAAS+ MGL+ET ++PGAGGTQRLPR +G+ LAKELI+TGR +
Sbjct: 142 GGGLELALACDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLS 201
Query: 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSID 253
+A+++GLVN QN NAAY + +A++I PIAVR++K +ID
Sbjct: 202 GAQAQALGLVNHAVAQNEEGNAAYHRARALAQEILPQAPIAVRLSKVAID 251
|
|
| UNIPROTKB|F1S750 ECHDC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 540 (195.1 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 107/207 (51%), Positives = 144/207 (69%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GI E+ MNRP ARNAL V ++L A+ +R D VR ++ RS VK VFCAGADLK R
Sbjct: 1 GITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKERE 60
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
++E ++ FV LR + ++ + P P +A +DG A GGGLE+ALACD+RVAAS+ MGL
Sbjct: 61 QMSEAEVGVFVQRLRGLMNEIAAFPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGL 120
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
+ET ++PGAGGTQRLPR +G+ LAKELI+TGR + +A+++GLVN QN NAA
Sbjct: 121 IETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAA 180
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSID 253
Y +L +A++I PIAVR+ K +ID
Sbjct: 181 YHRALALAQEILPQAPIAVRLGKLAID 207
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P52046 | CRT_CLOAB | 4, ., 2, ., 1, ., 5, 5 | 0.3990 | 0.6306 | 0.8045 | yes | N/A |
| Q9CLV5 | MENB_PASMU | 4, ., 1, ., 3, ., 3, 6 | 0.3181 | 0.6816 | 0.7964 | yes | N/A |
| O07137 | ECHA8_MYCLE | 4, ., 2, ., 1, ., 1, 7 | 0.3058 | 0.7177 | 0.9299 | yes | N/A |
| Q3TLP5 | ECHD2_MOUSE | No assigned EC number | 0.4440 | 0.7537 | 0.8479 | yes | N/A |
| Q2TBT3 | ECHD2_BOVIN | No assigned EC number | 0.4239 | 0.8168 | 0.9189 | yes | N/A |
| O34893 | YNGF_BACSU | No assigned EC number | 0.4225 | 0.7297 | 0.9346 | yes | N/A |
| Q54HG7 | AUHM_DICDI | 4, ., 2, ., 1, ., 1, 8 | 0.4132 | 0.8138 | 0.8943 | yes | N/A |
| A4YI89 | HPCD_METS5 | 4, ., 2, ., 1, ., 1, 1, 6 | 0.3356 | 0.7237 | 0.9305 | yes | N/A |
| P64017 | ECHA8_MYCBO | 4, ., 2, ., 1, ., 1, 7 | 0.3036 | 0.7297 | 0.9455 | yes | N/A |
| P64016 | ECHA8_MYCTU | 4, ., 2, ., 1, ., 1, 7 | 0.3036 | 0.7297 | 0.9455 | yes | N/A |
| Q52995 | ECHH_RHIME | 4, ., 2, ., 1, ., 1, 7 | 0.3114 | 0.7237 | 0.9377 | yes | N/A |
| Q86YB7 | ECHD2_HUMAN | No assigned EC number | 0.4475 | 0.7537 | 0.8595 | yes | N/A |
| P44960 | MENB_HAEIN | 4, ., 1, ., 3, ., 3, 6 | 0.3045 | 0.6846 | 0.8 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 4.2.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 333 | |||
| PLN02600 | 251 | PLN02600, PLN02600, enoyl-CoA hydratase | 2e-87 | |
| PRK07657 | 260 | PRK07657, PRK07657, enoyl-CoA hydratase; Provision | 7e-84 | |
| cd06558 | 195 | cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme | 2e-62 | |
| COG1024 | 257 | COG1024, CaiD, Enoyl-CoA hydratase/carnithine race | 2e-57 | |
| pfam00378 | 245 | pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami | 7e-56 | |
| PRK05809 | 260 | PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata | 5e-53 | |
| PRK06688 | 259 | PRK06688, PRK06688, enoyl-CoA hydratase; Provision | 4e-49 | |
| PRK09674 | 255 | PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; | 3e-44 | |
| PRK06190 | 258 | PRK06190, PRK06190, enoyl-CoA hydratase; Provision | 4e-44 | |
| PRK07509 | 262 | PRK07509, PRK07509, enoyl-CoA hydratase; Provision | 8e-44 | |
| PRK09245 | 266 | PRK09245, PRK09245, enoyl-CoA hydratase; Provision | 3e-43 | |
| PRK05862 | 257 | PRK05862, PRK05862, enoyl-CoA hydratase; Provision | 2e-41 | |
| PRK07658 | 257 | PRK07658, PRK07658, enoyl-CoA hydratase; Provision | 2e-41 | |
| PRK11730 | 715 | PRK11730, fadB, multifunctional fatty acid oxidati | 2e-39 | |
| PRK08138 | 261 | PRK08138, PRK08138, enoyl-CoA hydratase; Provision | 1e-38 | |
| PRK06142 | 272 | PRK06142, PRK06142, enoyl-CoA hydratase; Provision | 3e-38 | |
| PRK06494 | 259 | PRK06494, PRK06494, enoyl-CoA hydratase; Provision | 6e-38 | |
| PRK05980 | 260 | PRK05980, PRK05980, enoyl-CoA hydratase; Provision | 8e-38 | |
| PRK08252 | 254 | PRK08252, PRK08252, enoyl-CoA hydratase; Provision | 5e-36 | |
| PRK11423 | 261 | PRK11423, PRK11423, methylmalonyl-CoA decarboxylas | 3e-35 | |
| PRK11154 | 708 | PRK11154, fadJ, multifunctional fatty acid oxidati | 3e-34 | |
| TIGR02437 | 714 | TIGR02437, FadB, fatty oxidation complex, alpha su | 2e-33 | |
| PRK07799 | 263 | PRK07799, PRK07799, enoyl-CoA hydratase; Provision | 1e-32 | |
| PRK06127 | 269 | PRK06127, PRK06127, enoyl-CoA hydratase; Provision | 2e-32 | |
| PRK05995 | 262 | PRK05995, PRK05995, enoyl-CoA hydratase; Provision | 2e-32 | |
| PRK08260 | 296 | PRK08260, PRK08260, enoyl-CoA hydratase; Provision | 3e-32 | |
| PRK06143 | 256 | PRK06143, PRK06143, enoyl-CoA hydratase; Provision | 1e-31 | |
| PRK08150 | 255 | PRK08150, PRK08150, enoyl-CoA hydratase; Provision | 2e-31 | |
| PRK09076 | 258 | PRK09076, PRK09076, enoyl-CoA hydratase; Provision | 3e-30 | |
| PRK05869 | 222 | PRK05869, PRK05869, enoyl-CoA hydratase; Validated | 6e-30 | |
| PRK03580 | 261 | PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr | 7e-30 | |
| TIGR01929 | 259 | TIGR01929, menB, naphthoate synthase (dihydroxynap | 1e-29 | |
| PRK07468 | 262 | PRK07468, PRK07468, enoyl-CoA hydratase; Provision | 2e-29 | |
| PRK06144 | 262 | PRK06144, PRK06144, enoyl-CoA hydratase; Provision | 4e-29 | |
| COG0447 | 282 | COG0447, MenB, Dihydroxynaphthoic acid synthase [C | 4e-29 | |
| TIGR02440 | 699 | TIGR02440, FadJ, fatty oxidation complex, alpha su | 5e-29 | |
| PRK06210 | 272 | PRK06210, PRK06210, enoyl-CoA hydratase; Provision | 6e-28 | |
| PRK08139 | 266 | PRK08139, PRK08139, enoyl-CoA hydratase; Validated | 1e-27 | |
| PRK07511 | 260 | PRK07511, PRK07511, enoyl-CoA hydratase; Provision | 6e-27 | |
| PRK07396 | 273 | PRK07396, PRK07396, dihydroxynaphthoic acid synthe | 3e-26 | |
| PRK07854 | 243 | PRK07854, PRK07854, enoyl-CoA hydratase; Provision | 3e-26 | |
| PLN02664 | 275 | PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d | 5e-26 | |
| PRK07110 | 249 | PRK07110, PRK07110, polyketide biosynthesis enoyl- | 2e-25 | |
| PLN02888 | 265 | PLN02888, PLN02888, enoyl-CoA hydratase | 6e-25 | |
| TIGR02441 | 737 | TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c | 7e-25 | |
| PRK08259 | 254 | PRK08259, PRK08259, enoyl-CoA hydratase; Provision | 1e-24 | |
| PLN02921 | 327 | PLN02921, PLN02921, naphthoate synthase | 3e-24 | |
| PRK08290 | 288 | PRK08290, PRK08290, enoyl-CoA hydratase; Provision | 4e-24 | |
| PRK06495 | 257 | PRK06495, PRK06495, enoyl-CoA hydratase; Provision | 6e-24 | |
| PRK06563 | 255 | PRK06563, PRK06563, enoyl-CoA hydratase; Provision | 9e-24 | |
| PRK08788 | 287 | PRK08788, PRK08788, enoyl-CoA hydratase; Validated | 1e-23 | |
| PRK05870 | 249 | PRK05870, PRK05870, enoyl-CoA hydratase; Provision | 3e-23 | |
| PRK07659 | 260 | PRK07659, PRK07659, enoyl-CoA hydratase; Provision | 1e-22 | |
| PRK07827 | 260 | PRK07827, PRK07827, enoyl-CoA hydratase; Provision | 2e-22 | |
| PRK05864 | 276 | PRK05864, PRK05864, enoyl-CoA hydratase; Provision | 1e-21 | |
| PRK09120 | 275 | PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata | 2e-21 | |
| TIGR02280 | 256 | TIGR02280, PaaB1, phenylacetate degradation probab | 3e-21 | |
| PRK08140 | 262 | PRK08140, PRK08140, enoyl-CoA hydratase; Provision | 8e-21 | |
| PRK07938 | 249 | PRK07938, PRK07938, enoyl-CoA hydratase; Provision | 2e-20 | |
| PRK07260 | 255 | PRK07260, PRK07260, enoyl-CoA hydratase; Provision | 7e-19 | |
| TIGR03210 | 256 | TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hyd | 9e-19 | |
| PRK07327 | 268 | PRK07327, PRK07327, enoyl-CoA hydratase; Provision | 5e-18 | |
| PRK05674 | 265 | PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr | 2e-17 | |
| PRK08321 | 302 | PRK08321, PRK08321, naphthoate synthase; Validated | 4e-17 | |
| PRK08258 | 277 | PRK08258, PRK08258, enoyl-CoA hydratase; Provision | 2e-16 | |
| PRK06072 | 248 | PRK06072, PRK06072, enoyl-CoA hydratase; Provision | 2e-15 | |
| TIGR03189 | 251 | TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecar | 3e-15 | |
| PRK05617 | 342 | PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol | 4e-15 | |
| PRK05981 | 266 | PRK05981, PRK05981, enoyl-CoA hydratase; Provision | 1e-14 | |
| PLN03214 | 278 | PLN03214, PLN03214, probable enoyl-CoA hydratase/i | 1e-14 | |
| PRK08272 | 302 | PRK08272, PRK08272, enoyl-CoA hydratase; Provision | 7e-14 | |
| PRK07112 | 255 | PRK07112, PRK07112, polyketide biosynthesis enoyl- | 6e-12 | |
| PRK06023 | 251 | PRK06023, PRK06023, enoyl-CoA hydratase; Provision | 2e-10 | |
| PLN02988 | 381 | PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol | 9e-10 | |
| PLN02851 | 407 | PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrol | 1e-08 | |
| TIGR03222 | 546 | TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lya | 3e-08 | |
| PRK08184 | 550 | PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; | 7e-08 | |
| PLN02157 | 401 | PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrol | 2e-07 | |
| PRK12478 | 298 | PRK12478, PRK12478, enoyl-CoA hydratase; Provision | 3e-07 | |
| PLN02874 | 379 | PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol | 6e-07 | |
| TIGR03200 | 360 | TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-car | 7e-07 | |
| PLN02267 | 239 | PLN02267, PLN02267, enoyl-CoA hydratase/isomerase | 2e-04 |
| >gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 262 bits (672), Expect = 2e-87
Identities = 122/286 (42%), Positives = 177/286 (61%), Gaps = 39/286 (13%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GIVEL ++RP+A+NA+ ++ + +A E I+ D R V+LRS V VFCAGADLK R
Sbjct: 4 GIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERR 63
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
++ +++ FV++LR LE++ +P +AV++G+A GGGLE+AL+CD+R+ GL
Sbjct: 64 KMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGL 123
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
ET LAIIPGAGGTQRLPR+VG AKELI+TGR + + EA S+GLVN P A
Sbjct: 124 PETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCVP----AGEA 179
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTE 286
Y +L +A++I GP+A++MAK++I+ +GS+ +
Sbjct: 180 YEKALELAQEINQKGPLAIKMAKKAIN---------------------EGSEVDMA---- 214
Query: 287 NQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
SG+E E CY++V++T+DR+EGL +F K KPVY G
Sbjct: 215 ----------SGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPVYTG 250
|
Length = 251 |
| >gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 253 bits (649), Expect = 7e-84
Identities = 125/287 (43%), Positives = 171/287 (59%), Gaps = 39/287 (13%)
Query: 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
P +V++ +NRP+A NAL+ L+EE+ + I + VR V+L + FCAGADLK R
Sbjct: 12 PHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKER 71
Query: 106 LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
+NE+Q+R VS +R +E +P PV+A ++G A GGGLE+ALACD R+AA + +G
Sbjct: 72 AGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLG 131
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNA 225
L ET LAIIPGAGGTQRLPR++G+ AKELIYTGR + + EAK IGLV + P + +
Sbjct: 132 LTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEK 191
Query: 226 AYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGT 285
A + IAE IA NGPIAVR AK +I S G
Sbjct: 192 A----IEIAEKIASNGPIAVRQAKEAI-----------------------------SNGI 218
Query: 286 ENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+ ++G++ E Y+ I T+DR+EGL++F K KP+YKG
Sbjct: 219 QVD------LHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPMYKG 259
|
Length = 260 |
| >gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Score = 196 bits (501), Expect = 2e-62
Identities = 76/173 (43%), Positives = 114/173 (65%), Gaps = 3/173 (1%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
G+ + +NRP+ RNAL+ +++E+ A++ D +VR V+L FCAGADLK
Sbjct: 5 RDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTG-AGKAFCAGADLK 63
Query: 104 --HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
L+ ++ R+F+ L+ + L +P PV+A ++G+A GGGLE+ALACDIR+AA +
Sbjct: 64 ELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAED 123
Query: 162 VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVN 214
+ GL E KL ++PG GGTQRLPR+VG A+EL+ TGR + + EA +GLV+
Sbjct: 124 AKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVD 176
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195 |
| >gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 186 bits (473), Expect = 2e-57
Identities = 79/210 (37%), Positives = 121/210 (57%), Gaps = 6/210 (2%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
GI + +NRP+ NALN +++E+ A++ D +VR V+L F AGADLK
Sbjct: 11 REDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTG-AGKAFSAGADLK 69
Query: 104 HRLTLNEDQI-RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
L+ + + + + + L +P PV+A ++G A GGGLE+ALACDIR+AA +
Sbjct: 70 ELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDA 129
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPN 222
+ GL E L ++PG GGTQRLPR++G AKEL+ TG + + EA +GLV+ + P+
Sbjct: 130 KFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEV---VPD 186
Query: 223 QNAAYLASLRIAEDIAHNGPIAVRMAKRSI 252
+L +A +A P+A+ KR +
Sbjct: 187 AEELLERALELARRLA-APPLALAATKRLV 215
|
Length = 257 |
| >gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family | Back alignment and domain information |
|---|
Score = 181 bits (462), Expect = 7e-56
Identities = 82/203 (40%), Positives = 123/203 (60%), Gaps = 5/203 (2%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
G+ + ++RP+A NAL+A L+ E++ A+E + D V+ ++L F AGAD+K
Sbjct: 7 GVAVIKLDRPEAVNALSAELLTELIQALEKLEQDPSVKAIVLTGG-PGAFSAGADIKEMA 65
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
Q F + + +LE +P PV+A ++G A GGGLE+ALACD R+AA N + GL
Sbjct: 66 AEPLAQQAQFSLEAQDLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNAKFGL 125
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
E KL IIPGAGGTQRLPRI+G+ A E++ TGR + + EA +GLV+ + P+ A
Sbjct: 126 PEVKLGIIPGAGGTQRLPRIIGVSAALEMLLTGRRIRAQEALKMGLVDKVVPEEQLVEEA 185
Query: 227 YLASLRIAEDIAHNGPIAVRMAK 249
+ +A+ +A P+A+ K
Sbjct: 186 ----IELAQRLADKPPLALAALK 204
|
This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245 |
| >gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Score = 174 bits (444), Expect = 5e-53
Identities = 97/287 (33%), Positives = 145/287 (50%), Gaps = 41/287 (14%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
I + +NRP+A NALN+ ++E+ T ++ I D+ V V+L + F AGAD+
Sbjct: 13 HIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMK 72
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
LNE++ R F + +LE++ PV+A ++G A GGG E+++ACDIR+A+ + G
Sbjct: 73 DLNEEEGRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQ 132
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
E L I PG GGTQRL RIVG AKELIYTG ++++ EA IGLVN + A
Sbjct: 133 PEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEA 192
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYR-DGQSTHSPGRDGQGSKGGESKGT 285
+A IA N PIAV++ K +I+ RG Q D
Sbjct: 193 K----ALANKIAANAPIAVKLCKDAIN---RGMQVDID---------------------- 223
Query: 286 ENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+ + E + T+D+ EG+ +F+ K + +K
Sbjct: 224 -----------TAVAIEAEDFGECFSTEDQTEGMTAFVEKREKNFKN 259
|
Length = 260 |
| >gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 4e-49
Identities = 81/289 (28%), Positives = 128/289 (44%), Gaps = 47/289 (16%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--- 103
G++ + +NRP +NAL A + + + A+EA D VR V+L + F AG D+K
Sbjct: 14 GVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGR-AFSAGGDIKDFP 72
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
D++ LR + ++P PV+A ++G A G G+ +ALACD+ A+ + +
Sbjct: 73 KAPPKPPDELAPVNRFLR----AIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAK 128
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
L KL + P AGG+ LPR++G A E++ G + + EA IGLVN + P
Sbjct: 129 FSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELD 188
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283
A A +A A+R KR+I+
Sbjct: 189 AEA----DAQAAKLAAGPASALRYTKRAIN------------------------------ 214
Query: 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
E + + E + R++RT D EG +F+ K KP + G
Sbjct: 215 --AATLTELEEA---LAREAAGFGRLLRTPDFREGATAFIEKRKPDFTG 258
|
Length = 259 |
| >gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 3e-44
Identities = 92/290 (31%), Positives = 141/290 (48%), Gaps = 50/290 (17%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
++ L +NRP+ARNALN L+ +++ +EA D + ++ + F AGADL
Sbjct: 11 RVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNAR-FFAAGADL---- 65
Query: 107 TLNEDQIRSFVSTLRYMTCQL----ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
NE + +TL QL ++ P++A ++G A G G E+AL CDI +A N
Sbjct: 66 --NEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENA 123
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPN 222
R GL E L I+PGAGGTQRL R VG LA +++ TG + + +A+ GLV+ + P
Sbjct: 124 RFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPELT 183
Query: 223 QNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGES 282
A L++A IA + P+A+R AK+++ R Q
Sbjct: 184 LERA----LQLASKIARHSPLALRAAKQAL---------RQSQEV--------------- 215
Query: 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+G+ E + + T+DR EG+ +FL K P +KG
Sbjct: 216 -----------DLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPDFKG 254
|
Length = 255 |
| >gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 4e-44
Identities = 74/210 (35%), Positives = 106/210 (50%), Gaps = 9/210 (4%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ L +NRP+ARNAL+A L + A+ D++V V+L FCAG DLK
Sbjct: 11 HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTG-ADPAFCAGLDLKE 69
Query: 105 RLTLNEDQIRSFVST-LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
L D L + ++ PV+ ++G+A GGLE+ALACDI +A+ R
Sbjct: 70 ---LGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERAR 126
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
++ I+PG G + RLP+ VGI A+ + TG +D+ +A GLV + P +
Sbjct: 127 FADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDELL 186
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSID 253
A R+A IA N P AVR K S D
Sbjct: 187 PRA----RRLAASIAGNNPAAVRALKASYD 212
|
Length = 258 |
| >gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 8e-44
Identities = 69/217 (31%), Positives = 118/217 (54%), Gaps = 20/217 (9%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GI ++ +NRP NAL+ + EE++ ++ ++ D +R V+L S FCAG D+K
Sbjct: 12 GIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVIL-SGEGGAFCAGLDVK--- 67
Query: 107 TLNEDQIRSFV----------STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIR 156
++ + + + ++ +PVPV+A L+G +GGGL++AL DIR
Sbjct: 68 SVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIR 127
Query: 157 VAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTL 216
+AA + ++ ++E K ++P GT L +V +A+EL YT R+ + EA +GLV +
Sbjct: 128 IAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFSAEEALELGLVTHV 187
Query: 217 TPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSID 253
+ +P A+L +A +IA P A+ AKR I+
Sbjct: 188 S-DDP-----LAAALALAREIAQRSPDAIAAAKRLIN 218
|
Length = 262 |
| >gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 3e-43
Identities = 78/216 (36%), Positives = 114/216 (52%), Gaps = 14/216 (6%)
Query: 44 ERPG-IVELCMNRPQARNALNA-TLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGAD 101
ER G IV L MNRP+ RNAL+ V+ ++ A AI D VR V+L F +G +
Sbjct: 8 ERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGT-AFSSGGN 66
Query: 102 LKH------RLTLNEDQIR-SFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACD 154
+K + IR + ++ + L ++ VPV+A ++G A G G ++A CD
Sbjct: 67 VKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCD 126
Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVN 214
IR+A+ R KL +IPG GG LPRI+G+ A E+ +TG +D+ A GLV+
Sbjct: 127 IRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVS 186
Query: 215 TLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKR 250
+ P + AA +AE IA N P A+R+ KR
Sbjct: 187 RVVPADQLLPAA----RALAERIAANPPHALRLTKR 218
|
Length = 266 |
| >gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 2e-41
Identities = 97/298 (32%), Positives = 146/298 (48%), Gaps = 66/298 (22%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R G++ L NRP+A NALN L++E+ A+ A DE + +++ K F AGAD+K
Sbjct: 13 RVGLITL--NRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEK-AFAAGADIK- 68
Query: 105 RLTLNEDQIRSFVSTLR--YMTC--QLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS 160
E SF+ + Y+T ++ I PV+A + G A GGG E+A+ CDI +AA
Sbjct: 69 -----EMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAAD 123
Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQN 220
+ G E KL ++PG GG+QRL R VG A +L TGR++D+ EA+ GLV+ + P
Sbjct: 124 TAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVP-- 181
Query: 221 PNQNAAYLA--SLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSK 278
A L +L A IA AV MAK ++
Sbjct: 182 ----ADKLLDEALAAATTIASFSLPAVMMAKEAV-------------------------- 211
Query: 279 GGESKGTENQNREFQGRYSGMEWEGICYDR-----VIRTQDRVEGLKSFLGKYKPVYK 331
NR ++ + EG+ ++R + T+D+ EG+ +F+ K KPV+K
Sbjct: 212 ----------NRAYETTLA----EGLLFERRLFHSLFATEDQKEGMAAFVEKRKPVFK 255
|
Length = 257 |
| >gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 2e-41
Identities = 80/287 (27%), Positives = 132/287 (45%), Gaps = 42/287 (14%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
+ + +N P A NAL++ ++ E+ ++ + D+ VR V++ + F AGAD+K
Sbjct: 11 HVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGR-FFSAGADIKEFT 68
Query: 107 TLNE-DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
++ E +Q + ++E PV+A + G+A GGGLE+A++C IR A + ++G
Sbjct: 69 SVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLG 128
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNA 225
L E L +IPG GTQRLPR VG A E++ T + EA GLVN + P+ +
Sbjct: 129 LPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFPEETLLDD 188
Query: 226 AYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGT 285
A ++A+ IA P R +
Sbjct: 189 A----KKLAKKIAGKSPATTRAVLELL--------------------------------- 211
Query: 286 ENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+ Y G++ E + V ++D EG+++FL K KP + G
Sbjct: 212 -QTTKSSS-YYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPSFSG 256
|
Length = 257 |
| >gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 146 bits (372), Expect = 2e-39
Identities = 72/191 (37%), Positives = 110/191 (57%), Gaps = 5/191 (2%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GI EL + P + N L+ + + A++A+ +++ +LL S KD F GAD+ L
Sbjct: 16 GIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTS-AKDAFIVGADITEFL 74
Query: 107 TL---NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
+L E+++ ++ + +LE +PVP +A ++G A GGG E LA D RVA+ + R
Sbjct: 75 SLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDAR 134
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
+GL ETKL I+PG GGT RLPR++G A E I G+ V + +A +G V+ + Q
Sbjct: 135 IGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQ 194
Query: 224 NAAYLASLRIA 234
AA LA L+ A
Sbjct: 195 EAA-LALLKQA 204
|
Length = 715 |
| >gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 1e-38
Identities = 77/210 (36%), Positives = 113/210 (53%), Gaps = 13/210 (6%)
Query: 44 ERP--GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGAD 101
ERP G+ L +NRP+ARNALN + +++ + D ++R ++L + VF AGAD
Sbjct: 12 ERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTG-GEKVFAAGAD 70
Query: 102 LKHRLTLN--EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
+K T E +R T RY + P PV+A ++G A GGG E+A+ DI VA
Sbjct: 71 IKEFATAGAIEMYLRH---TERYWEA-IAQCPKPVIAAVNGYALGGGCELAMHADIIVAG 126
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219
+ G E K+ ++PGAGGTQRL R VG A + TG +V + EA +IGLV+ +
Sbjct: 127 ESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGLVSEVVE- 185
Query: 220 NPNQNAAYLASLRIAEDIAHNGPIAVRMAK 249
+L +A +IA P+A+ K
Sbjct: 186 ---DEQTLPRALELAREIARMPPLALAQIK 212
|
Length = 261 |
| >gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 3e-38
Identities = 68/218 (31%), Positives = 105/218 (48%), Gaps = 15/218 (6%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL---- 102
+ ++ +NRP NA+N E+ + D EVR V+L K F G DL
Sbjct: 15 HVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKH-FSYGIDLPAMA 73
Query: 103 -------KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDI 155
K L +R + L+ + PV+A + G GGG+++ ACD+
Sbjct: 74 GVFGQLGKDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDM 133
Query: 156 RVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNT 215
R A+++ + + E L ++ G QRLPRI+G +EL TGR +D+ EA+ IGLVN
Sbjct: 134 RYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNR 193
Query: 216 LTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSID 253
+ + +A A+ A +IA P+AVR K +D
Sbjct: 194 VY---DDADALLAAAHATAREIAAKSPLAVRGTKEVLD 228
|
Length = 272 |
| >gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 6e-38
Identities = 82/293 (27%), Positives = 127/293 (43%), Gaps = 47/293 (16%)
Query: 44 ERPG-IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL 102
ER G + + +NRP+ NAL+ E+ + D E ++ F AG DL
Sbjct: 9 ERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDL 68
Query: 103 KHRLTLNEDQI--RSFVS-TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
K + + F T R+ + P++A ++G A GGG E+ALACD+ VAA
Sbjct: 69 KEQAAGGKRGWPESGFGGLTSRFDLDK------PIIAAVNGVAMGGGFELALACDLIVAA 122
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219
N L E ++ + AGG RLPR +G+ A +I TGR V + E +G VN + P
Sbjct: 123 ENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLELGFVNEVVPA 182
Query: 220 NPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKG 279
A+ R A+DI P+++R +K+++ +G
Sbjct: 183 GE----LLAAAERWADDILACSPLSIRASKQAV------------------------YRG 214
Query: 280 GESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
E + + Q Y +E +QD +EG K+F K P +KG
Sbjct: 215 LEV--SLEEAITAQRDYPAVE-------ARRASQDYIEGPKAFAEKRPPRWKG 258
|
Length = 259 |
| >gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 8e-38
Identities = 76/206 (36%), Positives = 110/206 (53%), Gaps = 10/206 (4%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R GI L +NRP+ NALN L++ +L ++AI DE VR V+L F AGAD+ H
Sbjct: 10 RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADI-H 68
Query: 105 RLTLN-----EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
+ + + +R FV + MT +LE+ P PV+A ++G A+GGG E+ A + +A+
Sbjct: 69 EFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIAS 128
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219
E +L + P GGTQRLPR+ G A EL+ TG + A IGLVN + P
Sbjct: 129 ERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAVVP- 187
Query: 220 NPNQNAAYLASLRIAEDIAHNGPIAV 245
A+ +A I + P+AV
Sbjct: 188 ---HEELLPAARALARRIIRHSPVAV 210
|
Length = 260 |
| >gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 5e-36
Identities = 78/214 (36%), Positives = 114/214 (53%), Gaps = 17/214 (7%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
R ++ + +NRP+ARNA+NA + + + A++ + D ++ +L FCAG DLK
Sbjct: 9 RRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTG-AGGTFCAGMDLK 67
Query: 104 HRLTLNEDQI--RSFVSTLRYMTCQLESIPV--PVLAVLDGSAYGGGLEMALACDIRVAA 159
I R F L P P++A ++G A GG E+ALACD+ VAA
Sbjct: 68 AFARGERPSIPGRGF--------GGLTERPPRKPLIAAVEGYALAGGFELALACDLIVAA 119
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219
+ + GL E K ++ GG RLPR + +A EL TG ++ + A +GLVN LT
Sbjct: 120 RDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVNRLTE- 178
Query: 220 NPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSID 253
P Q A A+L +AE IA NGP+AV +KR +
Sbjct: 179 -PGQ--ALDAALELAERIAANGPLAVAASKRIVV 209
|
Length = 254 |
| >gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 3e-35
Identities = 70/299 (23%), Positives = 130/299 (43%), Gaps = 42/299 (14%)
Query: 36 QIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLV-KD 94
Q + + + + N P RNAL+ L+++++ A+ + E+R V+LR+
Sbjct: 4 QYVNVVTINKIATIT--FNNPAKRNALSKVLIDDLMQALSDLN-RPEIRVVILRAPSGSK 60
Query: 95 VFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACD 154
V+ AG D+ + D + S+ LR + ++ P PV+A+++GS +GG E+ ++CD
Sbjct: 61 VWSAGHDIHELPSGGRDPL-SYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCD 119
Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVN 214
+ +AAS + L + G G + KE+ +T + + A ++G++N
Sbjct: 120 LIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILN 179
Query: 215 TLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDG 274
+ ++ ++A I+ P+A+ + K Q R H D
Sbjct: 180 HVVEVEELEDFTL----QMAHHISEKAPLAIAVIKE---------QLRVLGEAHPMNPD- 225
Query: 275 QGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333
EF+ R G+ YD ++D EG+ +FL K KPV+ G
Sbjct: 226 ----------------EFE-RIQGL--RRAVYD----SEDYQEGMNAFLEKRKPVFVGH 261
|
Length = 261 |
| >gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 3e-34
Identities = 56/163 (34%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL-NEDQIRSFVS 118
N L A E++ ++ +R D+E++ V+ S D F AGAD+ + +
Sbjct: 29 NTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALAR 88
Query: 119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--VRMGLVETKLAIIPG 176
+ + ++E++P+PV+A + G+ GGGLE+ALAC RV + +GL E +L ++PG
Sbjct: 89 QGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPG 148
Query: 177 AGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219
+GGTQRLPR++G+ A ++I TG+ + + +A +GLV+ + P
Sbjct: 149 SGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPH 191
|
Length = 708 |
| >gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 2e-33
Identities = 66/196 (33%), Positives = 105/196 (53%), Gaps = 7/196 (3%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GI EL + P + N + + + A++AI+ ++ V+L S KD F GAD+ L
Sbjct: 16 GIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTS-GKDAFIVGADITEFL 74
Query: 107 TL---NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
L + ++ ++ + +LE +PVP +A ++G A GGG E LA D R+A +
Sbjct: 75 GLFALPDAELIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAK 134
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
+GL ETKL I+PG GGT RLPR++G A E I +G+ + +A +G V+ + +
Sbjct: 135 IGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDAVVTADKLG 194
Query: 224 NAAYLASLR--IAEDI 237
AA L L+ I +
Sbjct: 195 AAA-LQLLKDAINGKL 209
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714 |
| >gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 1e-32
Identities = 79/292 (27%), Positives = 132/292 (45%), Gaps = 43/292 (14%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
+R + + MNRP+ARNAL+ ++ ++ A + + D ++R +L FCAG DLK
Sbjct: 11 QRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTG-AGGAFCAGMDLK 69
Query: 104 HRLTLNE-DQIRSFVSTLRYMTCQLE--SIPVPVLAVLDGSAYGGGLEMALACDIRVAAS 160
D + + L+ + P++A ++G A GG E+ DIRVA
Sbjct: 70 AATKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGE 129
Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQN 220
+ + G+ E K ++ P G RL R + +A +L+ TGR + + EAK IGL+ + P
Sbjct: 130 SAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHVVP-- 187
Query: 221 PNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGG 280
A +L +AE I NGP+AV+ R+I R+ +G
Sbjct: 188 --DGQALDKALELAELINANGPLAVQAILRTI-------------------RETEGMHEN 226
Query: 281 ESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
E+ + + G+ V ++D EG ++F K P ++G
Sbjct: 227 EAFKIDTKI--------GIP--------VFLSEDAKEGPRAFAEKRAPNFQG 262
|
Length = 263 |
| >gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 2e-32
Identities = 79/291 (27%), Positives = 125/291 (42%), Gaps = 47/291 (16%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH-- 104
G+ + N P NA++ + E + A+ A D+ +R V+L + F +GAD+
Sbjct: 20 GLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFE 79
Query: 105 RLTLNEDQIRSF--VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
+ + + ++ L P +A + G GGG+ +ALACDIR+AA +
Sbjct: 80 ESRSDAEAVAAYEQAVEAAQAA--LADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDS 137
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPN 222
R G+ +L + G G + L +VG AK+L YT R D+ EA IGLV+ +T
Sbjct: 138 RFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVTA---- 193
Query: 223 QNAAYLASLR-IAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281
+L A IA N P+ +R AKR+I + RD + +
Sbjct: 194 -ADDLETALADYAATIAGNAPLTLRAAKRAIAELLKDEPERDMAACQALVAA-------- 244
Query: 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
C+D ++D EG +F+ K KPV+KG
Sbjct: 245 -----------------------CFD----SEDYREGRAAFMEKRKPVFKG 268
|
Length = 269 |
| >gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-32
Identities = 73/216 (33%), Positives = 104/216 (48%), Gaps = 19/216 (8%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL-- 102
R + + +NRP RNA N T++ E+ A A+ D+ VR V+L K FCAGADL
Sbjct: 11 RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGK-AFCAGADLNW 69
Query: 103 -KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
K ++D+ R+ L M + P PV+A + G AY GG+ + ACDI VAA +
Sbjct: 70 MKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADH 129
Query: 162 VRMGLVETKLAIIPGAGGTQRLP---RIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218
L E +L +IP P R +G A+ T D+ EA +GLV+ + P
Sbjct: 130 AVFCLSEVRLGLIP----ATISPYVIRAMGERAARRYFLTAERFDAAEALRLGLVHEVVP 185
Query: 219 QNPNQNAAYL-ASL-RIAEDIAHNGPIAVRMAKRSI 252
A L A + + + N P AVR KR +
Sbjct: 186 ------AEALDAKVDELLAALVANSPQAVRAGKRLV 215
|
Length = 262 |
| >gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 3e-32
Identities = 84/303 (27%), Positives = 133/303 (43%), Gaps = 55/303 (18%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL---- 102
GI + +NRP NA T+ E++ A +A D+ VR V++ + FCAGADL
Sbjct: 13 GIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGR-AFCAGADLSAGG 71
Query: 103 ---------KHRLTLNEDQIRSFVSTLR----YMTCQLESIPVPVLAVLDGSAYGGGLEM 149
ED+ +R +T ++ PV+A ++G A G G M
Sbjct: 72 NTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATM 131
Query: 150 ALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKS 209
LA DIR+A++ R G V + I+P A + LPR+VG+ A E +Y+GR+ D+ EA
Sbjct: 132 TLAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQEALD 191
Query: 210 IGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHS 269
GLV ++ P + AA + IA++ + P++V + ++ + R H
Sbjct: 192 GGLVRSVHPPDELLPAARALAREIADNTS---PVSVALTRQMM---WRMAGADHPMEAH- 244
Query: 270 PGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPV 329
R +S+ + G R+ D EG+ SFL K V
Sbjct: 245 --RV-------DSR--------------AIYSRG-------RSGDGKEGVSSFLEKRPAV 274
Query: 330 YKG 332
+ G
Sbjct: 275 FPG 277
|
Length = 296 |
| >gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 1e-31
Identities = 66/205 (32%), Positives = 110/205 (53%), Gaps = 5/205 (2%)
Query: 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
G+ L + + N L ++ + A+ + D +VR ++LR + F GAD+K
Sbjct: 15 RGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEM 74
Query: 106 LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
TL++ +F+S LR + + PVPV+A + G GGGLE+A ACD+R+AA + + G
Sbjct: 75 ATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFG 134
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNA 225
+ E ++ IP LPR++G + L+ TG +D+ +A + GLV+ + P +
Sbjct: 135 MPEVRVG-IPSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVVP--LAELD 191
Query: 226 AYLASLRIAEDIAHNGPIAVRMAKR 250
A + R+A +A GP A+R KR
Sbjct: 192 AAVE--RLAASLAGCGPQALRQQKR 214
|
Length = 256 |
| >gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-31
Identities = 68/201 (33%), Positives = 101/201 (50%), Gaps = 13/201 (6%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK-HR 105
G+ + +NRP RNALN L+ + A + E VR V+L D FCAG DL R
Sbjct: 11 GVATIGLNRPAKRNALNDGLIAALRAAFARL--PEGVRAVVLHG-EGDHFCAGLDLSELR 67
Query: 106 LTLNEDQIRSFVSTLRYMTC--QLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
D + R+ +++ VPV+A L G+ GGGLE+A A IRVA +
Sbjct: 68 ---ERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTY 124
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
L E + I G GG+ R+PR++G+ +++ TGR+ D+ E + +GL L P
Sbjct: 125 FALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVP----A 180
Query: 224 NAAYLASLRIAEDIAHNGPIA 244
A ++ +A IA N P+
Sbjct: 181 GEALDKAMELARRIAQNAPLT 201
|
Length = 255 |
| >gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 3e-30
Identities = 69/206 (33%), Positives = 102/206 (49%), Gaps = 13/206 (6%)
Query: 51 LCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE 110
L +N P A N A ++ + V + D++V +++ + F AGADL ++
Sbjct: 16 LTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDK 74
Query: 111 DQIRSFVSTLRYMTCQLESI----PVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
R R E++ V +A ++G A GGGLE ALACDIR+A +M L
Sbjct: 75 AVAREM---ARRFGEAFEALSAFRGV-SIAAINGYAMGGGLECALACDIRIAEEQAQMAL 130
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
E + ++P AGGTQ LP +VG AK +I G VD+ A IGLV + + + AA
Sbjct: 131 PEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVEKGEAREAA 190
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSI 252
L +A+ +A+ P AV K I
Sbjct: 191 ----LALAQKVANQSPSAVAACKTLI 212
|
Length = 258 |
| >gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 6e-30
Identities = 63/224 (28%), Positives = 104/224 (46%), Gaps = 6/224 (2%)
Query: 32 RKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSL 91
+ ++ + + G+ L ++RP NAL + EI+ A + ++V V+L
Sbjct: 2 NEFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYG- 59
Query: 92 VKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMAL 151
++F AG D+ TL+ + + + + +IP P +A + G A G GL +AL
Sbjct: 60 GHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLAL 119
Query: 152 ACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIG 211
A D RV+ NV+ G E + P G RL R G AKEL+++GR D+ EA ++G
Sbjct: 120 AADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALG 179
Query: 212 LVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGP 255
L++ + + Y A+ A P A+ AK I
Sbjct: 180 LIDEMVA----PDDVYDAAAAWARRFLDGPPHALAAAKAGISDV 219
|
Length = 222 |
| >gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 7e-30
Identities = 81/287 (28%), Positives = 130/287 (45%), Gaps = 39/287 (13%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
I+E+ ++RP+A NA++A + R D E+R ++ + F AG DLK
Sbjct: 12 SILEITLDRPKA-NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLK-AA 69
Query: 107 TLNEDQIRSF-VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
E F +T ++ + PV+A ++G A+GGG E+ALA D V A N
Sbjct: 70 AEGEAPDADFGPGGFAGLT-EIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFA 128
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNA 225
L E KL I+P +GG RLP+ + +A E++ TGR +D+ EA G+VN + PQ +
Sbjct: 129 LPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQAELMDR 188
Query: 226 AYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGT 285
A +A+ + ++ P+A+ K R T + + R G
Sbjct: 189 AR----ELAQQLVNSAPLAIAALKEIY----RETSEMPVEEAYRYIRSGVLKH------- 233
Query: 286 ENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
Y V+ ++D +EG ++F K PV+KG
Sbjct: 234 --------------------YPSVLHSEDALEGPRAFAEKRDPVWKG 260
|
Length = 261 |
| >gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase) | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-29
Identities = 79/242 (32%), Positives = 120/242 (49%), Gaps = 18/242 (7%)
Query: 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVK 93
I Y S + GI ++ +NRPQ RNA V+EI+ A++ R D ++ V+L
Sbjct: 1 FEDIRYEKSTD--GIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGD 58
Query: 94 DVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ--LESIPVPVLAVLDGSAYGGGLEMAL 151
FC+G D K R S V L + Q + + P PV+A+++G A GGG + +
Sbjct: 59 KAFCSGGDQKVR-GDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHM 117
Query: 152 ACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIG 211
CD+ +AA N R G K+ G G+ + RIVG A+E+ + R D+ +A +G
Sbjct: 118 MCDLTIAAENARFGQTGPKVGSFDGGYGSSYMARIVGQKKAREIWFLCRQYDAKQALDMG 177
Query: 212 LVNTLTPQNPNQNAAYL--ASLRIAEDIAHNGPIAVRMAKRSI----DGPGRGTQYRDGQ 265
LVNT+ P A L ++R +I P+A+RM K ++ DG G Q G
Sbjct: 178 LVNTVVP------LADLEKETVRWCREILQKSPMAIRMLKAALNADCDGQ-AGLQELAGN 230
Query: 266 ST 267
+T
Sbjct: 231 AT 232
|
This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259 |
| >gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 2e-29
Identities = 58/176 (32%), Positives = 92/176 (52%), Gaps = 5/176 (2%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL---K 103
G+ L +NRP+ NAL+A ++ E+ TA + D VR V+L K FCAG DL +
Sbjct: 14 GVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKS-FCAGGDLGWMR 72
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
++T + L M L +P P++ + G A+GGG+ + CD+ +A S R
Sbjct: 73 AQMTADRATRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGAR 132
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219
GL ET+L +IP + R+ G A+ + + RL D+ EA +GL++ + P
Sbjct: 133 FGLTETRLGLIPATISPYVVARM-GEANARRVFMSARLFDAEEAVRLGLLSRVVPA 187
|
Length = 262 |
| >gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 4e-29
Identities = 65/218 (29%), Positives = 103/218 (47%), Gaps = 22/218 (10%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R GI + NRP ARNA+ + E + EAI D +R V+LR F AG D+
Sbjct: 15 RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIA- 73
Query: 105 RLTLNEDQIRSFVS---TLRY------MTCQLESIPVPVLAVLDGSAYGGGLEMALACDI 155
Q R+F + + Y + LE + VP +A + G+ GGG +A ACD+
Sbjct: 74 -------QFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDL 126
Query: 156 RVAASNVRMGL-VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVN 214
R+A + R G + L RL ++G K++++T RL+++ EA + GLVN
Sbjct: 127 RIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAAGLVN 186
Query: 215 TLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSI 252
+ A +AE +A + P+ +R K ++
Sbjct: 187 EVVEDAALDARA----DALAELLAAHAPLTLRATKEAL 220
|
Length = 262 |
| >gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 4e-29
Identities = 68/222 (30%), Positives = 104/222 (46%), Gaps = 10/222 (4%)
Query: 32 RKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSL 91
I Y S + GI ++ +NRP+ RNA V+E++ A R D V +LL
Sbjct: 15 EGYEDITYEKSVD--GIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGN 72
Query: 92 V--KDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ--LESIPVPVLAVLDGSAYGGGL 147
FC+G D K R + L + Q + ++P PV+A++ G A GGG
Sbjct: 73 GDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVIAMVAGYAIGGGH 132
Query: 148 EMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEA 207
+ + CD+ +AA N G K+ G G+ L RIVG A+E+ + R D+ EA
Sbjct: 133 VLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEEA 192
Query: 208 KSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAK 249
+GLVNT+ P + ++ A ++ P A+RM K
Sbjct: 193 LDMGLVNTVVPHADLEKET----VQWAREMLAKSPTALRMLK 230
|
Length = 282 |
| >gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 5e-29
Identities = 60/178 (33%), Positives = 107/178 (60%), Gaps = 4/178 (2%)
Query: 47 GIVELCMNRPQAR-NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
GI L ++ P + N L A +++ + ++ D+ +R ++L S D F AGAD+
Sbjct: 10 GIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISML 69
Query: 106 LTL-NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--V 162
+ ++ + + +LE++P+PV+A + G+ GGGLE+ALAC RV + +
Sbjct: 70 AACQTAGEAKALAQQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKT 129
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQN 220
+GL E +L ++PG+GGTQRLPR++G+ A ++I TG+ + + +A +GLV+ + PQ+
Sbjct: 130 VLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPQS 187
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699 |
| >gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 6e-28
Identities = 62/217 (28%), Positives = 104/217 (47%), Gaps = 16/217 (7%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
G+ + +NRP NA + E+ A++ D VR ++L + FCAGAD+
Sbjct: 15 GVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRG-FCAGADMGELQ 73
Query: 107 TLNEDQIRSFVSTLRYMTCQ----------LESIPVPVLAVLDGSAYGGGLEMALACDIR 156
T++ R ++ + L ++ PV+A ++G+ G GL AL CD+R
Sbjct: 74 TIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVR 133
Query: 157 VAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTL 216
AA + + +I G + LPR+VG A +L+ + R + EA +GLVN +
Sbjct: 134 FAADGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFYAEEALRLGLVNRV 193
Query: 217 TPQNPNQNAAYLASLRIAEDIAHN-GPIAVRMAKRSI 252
P P++ +L AED+A N P ++ + KR +
Sbjct: 194 VP--PDELME--RTLAYAEDLARNVSPASMAVIKRQL 226
|
Length = 272 |
| >gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-27
Identities = 71/220 (32%), Positives = 103/220 (46%), Gaps = 33/220 (15%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R G+ L +NRPQA NAL+ ++ + A++AI D VR V+L + K FCAG DLK
Sbjct: 18 RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGK-AFCAGHDLK- 75
Query: 105 RLTLNEDQIRSFVSTL-----RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
+ ++ L R M + ++P PV+A + G A G ++ +CD+ VAA
Sbjct: 76 EMRAARG--LAYFRALFARCSRVMQ-AIVALPQPVIARVHGIATAAGCQLVASCDLAVAA 132
Query: 160 -------SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGL 212
V +GL P L R V A E++ TG +D+ A+ GL
Sbjct: 133 DTARFAVPGVNIGL----FCSTPMVA----LSRNVPRKQAMEMLLTGEFIDAATAREWGL 184
Query: 213 VNTLTPQNPNQNAAYLAS--LRIAEDIAHNGPIAVRMAKR 250
VN + P A L + R+A IA P AVR+ K
Sbjct: 185 VNRVVP------ADALDAAVARLAAVIAAKSPAAVRIGKE 218
|
Length = 266 |
| >gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 6e-27
Identities = 65/214 (30%), Positives = 102/214 (47%), Gaps = 12/214 (5%)
Query: 51 LCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN- 109
L ++ P ARNAL+ + + A+ D +R V+L FCAG +L RL N
Sbjct: 16 LTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTG-AGGFFCAGGNLN-RLLENR 73
Query: 110 ----EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
Q S + L + + P PV+A ++G+A G G +ALACD+ VAA + +
Sbjct: 74 AKPPSVQAAS-IDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFV 132
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNA 225
+ K+ + P GG+ L R + LA EL+ G+ + + ++G+VN L P Q
Sbjct: 133 MAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGVVNRLAE--PGQ-- 188
Query: 226 AYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGT 259
A +L +A+ +A P A+ K I T
Sbjct: 189 ALAEALALADQLAAGSPNALARIKSLIADAPEAT 222
|
Length = 260 |
| >gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 3e-26
Identities = 78/259 (30%), Positives = 125/259 (48%), Gaps = 29/259 (11%)
Query: 23 YSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEE 82
Y+ ++ ++ I+Y ++ GI ++ +NRP+ RNA V+E++ A R D+
Sbjct: 1 YAPVEWQDCKEYEDILYKSAD---GIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDN 57
Query: 83 VRCVLLRSLVKDVFCAGADLKHRLT---LNEDQI-RSFVSTLRYMTCQLESIPVPVLAVL 138
+ ++L FC+G D K R +++D + R V L+ + + P PV+A++
Sbjct: 58 IGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQR---LIRTCPKPVIAMV 114
Query: 139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYT 198
G A GGG + L CD+ +AA N G K+ G G L RIVG A+E+ +
Sbjct: 115 AGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFL 174
Query: 199 GRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASL-----RIAEDIAHNGPIAVRMAKRSI- 252
R D+ EA +GLVNT+ P LA L R ++ N P+A+R K ++
Sbjct: 175 CRQYDAQEALDMGLVNTVVP---------LADLEKETVRWCREMLQNSPMALRCLKAALN 225
Query: 253 ---DGPGRGTQYRDGQSTH 268
DG G Q G +T
Sbjct: 226 ADCDGQ-AGLQELAGNATM 243
|
Length = 273 |
| >gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 3e-26
Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 15/205 (7%)
Query: 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
++ + + RP+ RNALNA L EE+ AV DE R ++L VFCAGADL
Sbjct: 8 GQVLTIELQRPERRNALNAELCEELREAVRKA-VDESARAIVLTG-QGTVFCAGADLSGD 65
Query: 106 LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
+ ++ F L M +++ PVPV+A ++G A G GL++A+ACD+RV A
Sbjct: 66 VYADD-----FPDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQ 120
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNA 225
K I +RL +VG A+ ++ + + +A + G+ N + Q
Sbjct: 121 FPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIGTLADAQ-- 178
Query: 226 AYLASLRIAEDIAHNGPIAVRMAKR 250
A+ A +IA P+A++ AKR
Sbjct: 179 AW------AAEIAGLAPLALQHAKR 197
|
Length = 243 |
| >gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 5e-26
Identities = 72/223 (32%), Positives = 106/223 (47%), Gaps = 16/223 (7%)
Query: 38 IYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFC 97
I SP + L +NRP RNAL+ E A+ ++ + V ++L S D FC
Sbjct: 9 IIQKSPNSS-VFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIIL-SGAGDHFC 66
Query: 98 AGADLKHRLTLNED-----------QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGG 146
+G DLK +++E ++R + L+ +E PV+A + G+ GGG
Sbjct: 67 SGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGG 126
Query: 147 LEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTE 206
+++ ACDIR + + + E LAI G QRLP IVG A EL TGR +E
Sbjct: 127 VDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSE 186
Query: 207 AKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAK 249
AK +GLV+ + + + IAE IA P+AV K
Sbjct: 187 AKELGLVSRVFGSKEDLDEGVRL---IAEGIAAKSPLAVTGTK 226
|
Length = 275 |
| >gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 2e-25
Identities = 52/193 (26%), Positives = 83/193 (43%), Gaps = 8/193 (4%)
Query: 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
GI ++ M +NA + L +++ A + I D + V+L + F G +
Sbjct: 13 EGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGY-PNYFATGGTQEGL 71
Query: 106 LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
L+L + +F Y + L P+PV+A + G A GGGL + L DI V +
Sbjct: 72 LSL-QTGKGTFTEANLY-SLALN-CPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYT 128
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNA 225
K PG G T LP +G+ L +E++ T R E K G+ + P+
Sbjct: 129 ANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRGVPFPVLPRAEVLEK 188
Query: 226 AYLASLRIAEDIA 238
A L +A +A
Sbjct: 189 A----LELARSLA 197
|
Length = 249 |
| >gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 6e-25
Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 19/219 (8%)
Query: 42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFC 97
R GI + +NRP+A NAL ++ E+ A + + D+ V+ ++L R+ FC
Sbjct: 14 PKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRA-----FC 68
Query: 98 AGADLKHRLTLNEDQIRSFVSTLRYMT-CQLESIPVPVLAVLDGSAYGGGLEMALACDIR 156
+G DL T E+ + V + Q+E P++ ++G A G E+ALACDI
Sbjct: 69 SGVDL----TAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDIL 124
Query: 157 VAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTL 216
VA+ + K I P G +Q+L RI+G A+E+ T + + A+ GLVN +
Sbjct: 125 VASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHV 184
Query: 217 TPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSI-DG 254
++ A +AE I N V K I DG
Sbjct: 185 VEESELLKKA----REVAEAIIKNNQGMVLRYKSVINDG 219
|
Length = 265 |
| >gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 7e-25
Identities = 69/226 (30%), Positives = 115/226 (50%), Gaps = 18/226 (7%)
Query: 22 NYSTSVSKEGRKLTQIIYHNSPERPGIVELC-MNRPQAR-NALNATLVEEILTAVEAIRG 79
+STS + R H E G V + ++ P ++ N L+ L E + +
Sbjct: 2 LFSTSAALMART------HRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWT 55
Query: 80 DEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTL----RYMTCQLESIPVPVL 135
+E ++ +L S F AGAD++ + + V+ L + M ++E P++
Sbjct: 56 NEAIKSAVLISGKPGSFVAGADIQ---MIAACKTAQEVTQLSQEGQEMFERIEKSQKPIV 112
Query: 136 AVLDGSAYGGGLEMALACDIRVAA--SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAK 193
A + GS GGGLE+ALAC R+A +GL E L ++PGAGGTQRLP++ G+P A
Sbjct: 113 AAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAAL 172
Query: 194 ELIYTGRLVDSTEAKSIGLVNTLT-PQNPNQNAAYLASLRIAEDIA 238
+++ TG+ + + AK +G+V+ L P P A ++ E++A
Sbjct: 173 DMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVA 218
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737 |
| >gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 1e-24
Identities = 67/203 (33%), Positives = 95/203 (46%), Gaps = 39/203 (19%)
Query: 53 MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK-------HR 105
+NRP+ RNA++ + A A D+ +L FCAGADLK +R
Sbjct: 18 LNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWG-AGGTFCAGADLKAVGTGRGNR 76
Query: 106 LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
L + D M + PV+A + G A GGLE+AL CD+RVA + G
Sbjct: 77 LHPSGDGP---------MGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFG 127
Query: 166 ---------LVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTL 216
L++ GGT RLPR++G A +LI TGR VD+ EA +IGL N +
Sbjct: 128 VFCRRWGVPLID---------GGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRV 178
Query: 217 TPQNPNQNAAYLASLRIAEDIAH 239
P + A A+ +A ++A
Sbjct: 179 VP----KGQARAAAEELAAELAA 197
|
Length = 254 |
| >gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-24
Identities = 69/242 (28%), Positives = 111/242 (45%), Gaps = 22/242 (9%)
Query: 21 PNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGD 80
+ G++ T IIY + GI ++ +NRP+ RNA V+E+ A R D
Sbjct: 51 VVWRKVPDGSGKEFTDIIYEKAVGE-GIAKITINRPERRNAFRPRTVKELQRAFNDARDD 109
Query: 81 EEVRCVLLRSLVKDVFCAGADL----KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLA 136
V ++L FC+G D K +D R V L+ Q+ +P PV+A
Sbjct: 110 SSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQ---IQIRRLPKPVIA 166
Query: 137 VLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELI 196
++ G A GGG + + CD+ +AA N G K+ G+ + R+VG A+E+
Sbjct: 167 MVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMW 226
Query: 197 YTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASL-----RIAEDIAHNGPIAVRMAKRS 251
+ R ++EA +GLVNT+ P L L + +I N P A+R+ K +
Sbjct: 227 FLARFYTASEALKMGLVNTVVP---------LDELEGETVKWCREILRNSPTAIRVLKSA 277
Query: 252 ID 253
++
Sbjct: 278 LN 279
|
Length = 327 |
| >gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 4e-24
Identities = 68/239 (28%), Positives = 101/239 (42%), Gaps = 47/239 (19%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK- 103
I + +NRP+ARNA N ++ E+ A D+ VR ++L K F AG DL
Sbjct: 11 AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKH-FSAGHDLGS 69
Query: 104 ------------HRLTLNEDQIRSFVSTLRY---------MTCQLESIPVPVLAVLDGSA 142
TL D RY M + +P P +A + G+
Sbjct: 70 GTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGAC 129
Query: 143 YGGGLEMALACDIRVAASN-------VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKEL 195
GGL +A CD+ VA+ + VRMG+ + P G PR AKEL
Sbjct: 130 IAGGLMLAWVCDLIVASDDAFFSDPVVRMGIPGVEYFAHPWELG----PRK-----AKEL 180
Query: 196 IYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLAS--LRIAEDIAHNGPIAVRMAKRSI 252
++TG + + EA +G+VN + P L + L +A IA P +R+ KR++
Sbjct: 181 LFTGDRLTADEAHRLGMVNRVVP------RDELEAETLELARRIAAMPPFGLRLTKRAV 233
|
Length = 288 |
| >gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 6e-24
Identities = 79/282 (28%), Positives = 124/282 (43%), Gaps = 46/282 (16%)
Query: 53 MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNED- 111
++ P NAL+ L +E++ + I +VR V+L K VFCAGADLK R + +
Sbjct: 19 LDNPPV-NALSRELRDELIAVFDEISERPDVRVVVLTGAGK-VFCAGADLKGRPDVIKGP 76
Query: 112 -QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETK 170
+R+ R + PV+A ++G A G GL + +CDI VA+ N GL E
Sbjct: 77 GDLRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEID 136
Query: 171 LAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLAS 230
+ + AGG + R+ G L + ++ TG V + E G++ P A
Sbjct: 137 VGL---AGGGKHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPEELMPEA---- 189
Query: 231 LRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNR 290
+ IA +IA P+A R+AK +++ + RDG
Sbjct: 190 MEIAREIASKSPLATRLAKDALN-----------TIENMSLRDGY--------------- 223
Query: 291 EFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
RY + I + +T+D E ++FL K PV+KG
Sbjct: 224 ----RYE----QDITAK-LAKTEDAKEAQRAFLEKRPPVFKG 256
|
Length = 257 |
| >gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 9e-24
Identities = 62/217 (28%), Positives = 98/217 (45%), Gaps = 21/217 (9%)
Query: 44 ERPGIVELC-MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL 102
ER G V L ++RP RNA ++ +++++ A+ D+E+R +L + + F AG DL
Sbjct: 4 ERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFA-HGEHFTAGLDL 62
Query: 103 --------KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACD 154
E I + + R ++ P++ + G G+E+ LA D
Sbjct: 63 ADVAPKLAAGGFPFPEGGIDPWGTVGRRLS-------KPLVVAVQGYCLTLGIELMLAAD 115
Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVN 214
I VAA N R +E + I+P G T R P+ G A + TG D+ EA +GLV
Sbjct: 116 IVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQ 175
Query: 215 TLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRS 251
+ P A + +AE IA P+ V+ S
Sbjct: 176 EVVPPGEQLERA----IELAERIARAAPLGVQATLAS 208
|
Length = 255 |
| >gnl|CDD|236338 PRK08788, PRK08788, enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 1e-23
Identities = 66/237 (27%), Positives = 101/237 (42%), Gaps = 24/237 (10%)
Query: 30 EGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIR-----GDEEVR 84
E +L+Q+ + ER ++ + M R Q R N L+++I+ AIR V
Sbjct: 10 EAGELSQLRVYYEEER-NVMWMYM-RAQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVD 67
Query: 85 CVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESI---------PVPVL 135
+L S V VF G DL L R + L Y ++ + +
Sbjct: 68 FWVLASDVPGVFNLGGDLALFAELIRAGDRD--ALLAYARACVDGVHAFHRGFGAGAISI 125
Query: 136 AVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKEL 195
A++ G A GGG E AL+ +A +MG E + PG G L R VG LA+EL
Sbjct: 126 ALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEEL 185
Query: 196 IYTGRLVDSTEAKSIGLVNTLTPQNPNQNA--AYLASLRIAEDIAHNGPIAVRMAKR 250
I +G+L + E +GLV+ L + A ++ + NG A+ A+R
Sbjct: 186 ILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSK----RKLNGWRAMLRARR 238
|
Length = 287 |
| >gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 3e-23
Identities = 64/211 (30%), Positives = 93/211 (44%), Gaps = 17/211 (8%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
G+ + +N P RNA+ A + ++ AV A D +V +++ K FCAGADL
Sbjct: 12 GVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGK-AFCAGADLT--- 67
Query: 107 TLNEDQIRSFVSTLR--YMT-CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
L R LR Y + S P+P +A ++G+A G GL +ALA D+R+A
Sbjct: 68 ALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKAL 127
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLT--PQNP 221
KL + PG G T L R VG +A+ + G D+ A GL + P
Sbjct: 128 FDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMVADDPVA- 186
Query: 222 NQNAAYLASLRIAEDIAHNGPIAVRMAKRSI 252
A+L +A A V K S+
Sbjct: 187 -------AALELAAGPAAAPRELVLATKASM 210
|
Length = 249 |
| >gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 1e-22
Identities = 50/180 (27%), Positives = 97/180 (53%), Gaps = 3/180 (1%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
+ + +NRP+A NAL+ +++E+L A++ + + V+LR + F AG D+K L
Sbjct: 15 RVATIMLNRPEALNALDEPMLKELLQALKEVA-ESSAHIVVLRGNGR-GFSAGGDIKMML 72
Query: 107 TLN-EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
+ N E + ++T+ + L ++P ++ + G A G GL +AL D +A + ++
Sbjct: 73 SSNDESKFDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLA 132
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNA 225
+ + +IP GG L + VG AK++I+ G+ + +TEA +GL++ + + A
Sbjct: 133 MNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVIGGDFQTAA 192
|
Length = 260 |
| >gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 2e-22
Identities = 65/191 (34%), Positives = 87/191 (45%), Gaps = 5/191 (2%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
G+ L ++ P RNAL+A LV ++ + A D VR V+L + FCAGADL
Sbjct: 15 GVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVL-THTGGTFCAGADLSEAG 73
Query: 107 TLNEDQIRSFVSTLRYMTCQLESI---PVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
D + V+ R MT L +I P PV+A +DG GG + ACDI VA
Sbjct: 74 GGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPEST 133
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
L E ++ + P LPR+ A+ + TG + EA IGLV
Sbjct: 134 FALTEARIGVAPAIISLTLLPRLSPRAAARYYL-TGEKFGAAEAARIGLVTAAADDVDAA 192
Query: 224 NAAYLASLRIA 234
AA LA LR
Sbjct: 193 VAALLADLRRG 203
|
Length = 260 |
| >gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 1e-21
Identities = 65/204 (31%), Positives = 102/204 (50%), Gaps = 21/204 (10%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
RP I + +NRP+ N++ ++ + A+ + D VR V+L + F +GAD K
Sbjct: 17 RPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRG-FSSGADHKS 75
Query: 105 RLTL-NEDQIRSFVSTLRYM------TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRV 157
+ + + + LR M L + PV+A ++G A GGGL +ALA DIRV
Sbjct: 76 AGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRV 135
Query: 158 AASN-------VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSI 210
A+S+ + GL ++L G + LPR +G A E++ TGR VD+ EA+ I
Sbjct: 136 ASSSAYFRAAGINNGLTASEL------GLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERI 189
Query: 211 GLVNTLTPQNPNQNAAYLASLRIA 234
GLV+ P + Y + R+A
Sbjct: 190 GLVSRQVPDEQLLDTCYAIAARMA 213
|
Length = 276 |
| >gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 2e-21
Identities = 62/212 (29%), Positives = 97/212 (45%), Gaps = 19/212 (8%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GI + +NRP+ RNA++ TL E++ ++A+ D++ ++L D + AG DLK
Sbjct: 17 GIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTG-AGDAWSAGMDLKEYF 75
Query: 107 TLNEDQIRSFVSTLRYMTCQ----LESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
+ Q +R L P +A+++G +GGG +ACD+ +AA
Sbjct: 76 RETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEA 135
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPN 222
+ GL E I PG G ++ + VG A I TG +A +GLVN P
Sbjct: 136 QFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVNESVP---- 191
Query: 223 QNAAYLASLR-----IAEDIAHNGPIAVRMAK 249
LA LR +A + P+ +R AK
Sbjct: 192 -----LAQLRARTRELAAKLLEKNPVVLRAAK 218
|
Length = 275 |
| >gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 3e-21
Identities = 58/174 (33%), Positives = 88/174 (50%), Gaps = 13/174 (7%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR- 105
G+ L +NRP N+ A + E+ A+E + D+ R ++L + FCAG DL R
Sbjct: 8 GVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRG-FCAGQDLSERN 65
Query: 106 ------LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
L + +R +L ++P+PV+ ++G A G G +ALACDI +AA
Sbjct: 66 PTPGGAPDLGRTIETFYNPLVR----RLRALPLPVVCAVNGVAAGAGANLALACDIVLAA 121
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLV 213
+ R K+ +IP +GGT LPR+VG A L G +D+ A S GL+
Sbjct: 122 ESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLI 175
|
This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256 |
| >gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 8e-21
Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 22/179 (12%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGADL 102
G+ L +NRP N+ + E+ A++ + D+ R +LL R FCAG DL
Sbjct: 13 GVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRG-----FCAGQDL 66
Query: 103 KHRLTLNEDQ-------IRSFVSTL-RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACD 154
R I +F + L R +L ++P+PV+A ++G A G G +ALACD
Sbjct: 67 ADRDVTPGGAMPDLGESIETFYNPLVR----RLRALPLPVIAAVNGVAAGAGANLALACD 122
Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLV 213
I +AA + K+ ++P +GGT LPR+VG+ A L G + + +A+ GL+
Sbjct: 123 IVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLI 181
|
Length = 262 |
| >gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 2e-20
Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 16/213 (7%)
Query: 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
PGI E+ ++ P NAL + + A+ A D + R V+LR+ + F AG D+K
Sbjct: 10 PGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEGRG-FNAGVDIKE- 66
Query: 106 LTLNEDQIRSFVSTLRYMTCQLESI---PVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
+ + R ++ VPV+A + G GGG+ + D+ VA+ +
Sbjct: 67 -LQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDA 125
Query: 163 RMGLVETKLAIIPGA-GGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNP 221
GL E + GA G L R+V L + L +T + + E G V + P++
Sbjct: 126 TFGLPE----VDRGALGAATHLQRLVPQHLMRALFFTAATITAAELHHFGSVEEVVPRDQ 181
Query: 222 NQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDG 254
AA L +A IA +R AK +++G
Sbjct: 182 LDEAA----LEVARKIAAKDTRVIRAAKEALNG 210
|
Length = 249 |
| >gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 7e-19
Identities = 55/183 (30%), Positives = 89/183 (48%), Gaps = 12/183 (6%)
Query: 37 IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVF 96
IIY + + L +NRP+ N N + +EIL A+ D VR +L+ + K VF
Sbjct: 4 IIYEVEDD---LATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGK-VF 59
Query: 97 CAGADLKH-RLTLNEDQIRSFV---STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALA 152
G DL + ++ED ++S V + ++ ++ +P PV+ +DG+ G MA+A
Sbjct: 60 SVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVA 119
Query: 153 CDIRVAASNVRM--GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSI 210
D +A++ + V LA P AGG L R +G+ A L TG + + +A
Sbjct: 120 ADFCIASTKTKFIQAFVGVGLA--PDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEY 177
Query: 211 GLV 213
G V
Sbjct: 178 GFV 180
|
Length = 255 |
| >gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Score = 83.8 bits (207), Expect = 9e-19
Identities = 58/209 (27%), Positives = 99/209 (47%), Gaps = 5/209 (2%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R GI + +NRP NA +E++ A++ D ++ ++L FC G D +
Sbjct: 9 RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGD-QS 67
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
D + + + + +P PV+A + G A GGG + CD+ +A+ +
Sbjct: 68 THDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQF 127
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
G V K+ + GT L R+VG A+E+ Y R + EA ++GLVN + P +Q
Sbjct: 128 GQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVPH--DQL 185
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSID 253
A + + ++I P A+ +AKRS +
Sbjct: 186 DAEVQ--KWCDEIVEKSPTAIAIAKRSFN 212
|
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. Length = 256 |
| >gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 5e-18
Identities = 62/220 (28%), Positives = 94/220 (42%), Gaps = 25/220 (11%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
PG++E+ +N P A NA +A + E+ + D +VR VL+R K F AG DL
Sbjct: 19 PPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGK-AFSAGGDLA- 76
Query: 105 RLTLNEDQIRSFVSTLRYMT-----------CQLESIPVPVLAVLDGSAYGGGLEMALAC 153
L E+ F R C P+++ + G A G GL AL
Sbjct: 77 ---LVEEMADDFEVRARVWREARDLVYNVINC-----DKPIVSAIHGPAVGAGLVAALLA 128
Query: 154 DIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLV 213
DI +AA + R+ T+L + G P + G+ AK + V EA+ IGLV
Sbjct: 129 DISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLV 188
Query: 214 NTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSID 253
+ + A L +AE +A A+R K +++
Sbjct: 189 SLAVDDDELLPKA----LEVAERLAAGSQTAIRWTKYALN 224
|
Length = 268 |
| >gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 2e-17
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 19/211 (9%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL---K 103
G L ++R NA NA ++ E++ A++ ++ D +R +LLR + F AGADL +
Sbjct: 15 GFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRH-FSAGADLAWMQ 73
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
L+ + L + L + +P LAV+ G+A+GG L + CD+ + A + +
Sbjct: 74 QSADLDYNTNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQ 133
Query: 164 MGLVETKLAIIPGAGGTQRLPRIV---GIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQN 220
L E ++ + P P +V G A+ T D A+ +GL+ P
Sbjct: 134 FCLSEVRIGLAPAVIS----PFVVKAIGERAARRYALTAERFDGRRARELGLLAESYPAA 189
Query: 221 P--NQNAAYLASLRIAEDIAHNGPIAVRMAK 249
Q A++A+L N P A+R +K
Sbjct: 190 ELEAQVEAWIANL------LLNSPQALRASK 214
|
Length = 265 |
| >gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 4e-17
Identities = 70/240 (29%), Positives = 105/240 (43%), Gaps = 27/240 (11%)
Query: 30 EGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLR 89
G T I YH + + G V + +RP+ RNA V+E+ A++ R +V CVLL
Sbjct: 18 PGFDFTDITYHRAVD-QGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLT 76
Query: 90 S---LVKD---VFCAGADLKHR-----------LTLNEDQIRSFVSTLRYMTCQ--LESI 130
KD FC+G D + R D R+ L + Q + +
Sbjct: 77 GNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARA--GRLHILEVQRLIRFM 134
Query: 131 PVPVLAVLDGSAYGGGLEMALACDIRVA-ASNVRMGLVETKLAIIPGAGGTQRLPRIVGI 189
P V+AV+ G A GGG + + CD+ +A + R + + G G+ L R VG
Sbjct: 135 PKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVGQ 194
Query: 190 PLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAK 249
A+E+ + GR + EA +G VN + P + A L A +I P A+RM K
Sbjct: 195 KFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEA----LEWAREINGKSPTAMRMLK 250
|
Length = 302 |
| >gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 2e-16
Identities = 56/209 (26%), Positives = 94/209 (44%), Gaps = 27/209 (12%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR- 105
G+ + +NRP+ +N L E+ + ++V+ V+L FC+G D+ H
Sbjct: 26 GVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTG-AGGNFCSGGDV-HEI 83
Query: 106 ----LTLNEDQIRSFVSTLRYMTCQL----ESIPVPVLAVLDGSAYGGGLEMALACDIRV 157
++ ++ +F MT L + P P++A +DG G G +A+A D+R+
Sbjct: 84 IGPLTKMDMPELLAFTR----MTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRL 139
Query: 158 AASNVRMGLVETK--LAIIPGA--GGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLV 213
+ + + T+ LA GA G LPRI+G A EL+YTGR + + E + G
Sbjct: 140 GTPSAKTAFLFTRVGLA---GADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFF 196
Query: 214 NTLTPQNPNQNAAYLASLRIAEDIAHNGP 242
N L + +A +A GP
Sbjct: 197 NRLVE----PEELLAEAQALARRLA-AGP 220
|
Length = 277 |
| >gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 2e-15
Identities = 66/291 (22%), Positives = 119/291 (40%), Gaps = 49/291 (16%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
R G + M+RP NALN + E ++ ++ I D ++R V++ + FC GADL
Sbjct: 6 SREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGR-AFCVGADLS 64
Query: 104 H-RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
D +F +R ++ ++ ++G G + +AL+ D + A+ +V
Sbjct: 65 EFAPDFAIDLRETFYPIIR----EIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDV 120
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPN 222
+ +L + G L ++ G + L+ G + EA+ GL
Sbjct: 121 KFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILVLGGEF-TAEEAERWGL---------- 169
Query: 223 QNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGES 282
L+I+ED + A MA R +GP + ++ +K +
Sbjct: 170 --------LKISEDPLSD---AEEMANRISNGPFQ---------SYI------AAKRMIN 203
Query: 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333
N EF +E+E + +T+D EG+ SF K +P +KG+
Sbjct: 204 LVLYNDLEEF------LEYESAIQGYLGKTEDFKEGISSFKEKREPKFKGI 248
|
Length = 248 |
| >gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 3e-15
Identities = 61/207 (29%), Positives = 102/207 (49%), Gaps = 8/207 (3%)
Query: 44 ERPG-IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL 102
ER G ++ L + RP+A N ++A ++ + A+ D +R VLL + F GA +
Sbjct: 6 ERDGKLLRLRLARPKA-NIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPH-FSFGASV 63
Query: 103 KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
+ DQ + +++L + + PVP+L + G GGGLE+A A ++ AA +
Sbjct: 64 AEHMP---DQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDA 120
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPN 222
++G E L + A LP +G A++L+Y+GR +D E IGL N + ++P
Sbjct: 121 KLGQPEIVLGVFAPAASCL-LPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVA-EDPE 178
Query: 223 QNAAYLASLRIAEDIAHNGPIAVRMAK 249
A A+ A + AVR A+
Sbjct: 179 NAALAWFDEHPAKLSASSLRFAVRAAR 205
|
This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. Length = 251 |
| >gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 4e-15
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 6/143 (4%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH-- 104
G++ L NRP+A NAL+ ++ I A++A D+ V V++ + FCAG D++
Sbjct: 14 GVITL--NRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALY 71
Query: 105 --RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
+ F + + P P +A++DG GGG+ ++ R+
Sbjct: 72 EAARAGDPLAADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERT 131
Query: 163 RMGLVETKLAIIPGAGGTQRLPR 185
+M + ET + P GGT L R
Sbjct: 132 KMAMPETGIGFFPDVGGTYFLSR 154
|
Length = 342 |
| >gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 1e-14
Identities = 78/304 (25%), Positives = 134/304 (44%), Gaps = 69/304 (22%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIR-GDEEVRCVLLRSLVKDVFCAGADLKHR 105
G+ L ++ P+ NA++ ++ + A++AI G EVRC++L + FC GA+L+ R
Sbjct: 13 GVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRG-FCTGANLQGR 71
Query: 106 LTLNE------DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
+ D + + +L ++P P++ ++G A G G+ AL D+ + A
Sbjct: 72 GSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCA 131
Query: 160 SNV-------RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGL 212
+ R+GLV P G T LPR+VG A EL G + + A GL
Sbjct: 132 RSAYFLQAFRRIGLV-------PDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGL 184
Query: 213 VNTLTPQNPNQNAAYLA-SLRIAEDIAHNGP-IAVRMAKRSI-DGPGRGTQYRDGQSTHS 269
VN + +A +A ++++A ++A NGP +A+ + ++ D P
Sbjct: 185 VNRVVD-----DAELMAEAMKLAHELA-NGPTVALGLIRKLYWDSP-------------- 224
Query: 270 PGRDGQGSKGGESKGTENQNREFQG-RYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKP 328
E+ E N E + R +G +T+D EG+ +FL K
Sbjct: 225 -----------ENDFEEQLNLEREAQRIAG------------KTEDFKEGVGAFLQKRPA 261
Query: 329 VYKG 332
+KG
Sbjct: 262 QFKG 265
|
Length = 266 |
| >gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 1e-14
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 4/163 (2%)
Query: 60 NALNATLVEEILTAVEAIRGDEEVRCVLLRS-LVKDVFCAGADLK--HRLTLNEDQIRSF 116
N++ + + A+ A+ D VR V+ S L +DVF AG D+ + + + F
Sbjct: 33 NSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEF 92
Query: 117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAI-IP 175
T +L + + + G+ GG ++L CD R+ + MGL E L I +P
Sbjct: 93 WLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVP 152
Query: 176 GAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218
+ R++ +A+ L+ GRLV EAK +GL++ + P
Sbjct: 153 KFWARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVP 195
|
Length = 278 |
| >gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 7e-14
Identities = 50/205 (24%), Positives = 77/205 (37%), Gaps = 41/205 (20%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK- 103
I + +NRP+ NA+ A E+ AVE D V +L+ K FCAG DL
Sbjct: 17 TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKG-FCAGYDLSA 75
Query: 104 ------------------HRLTLNEDQIRSFVSTLRYMTCQLES------IPVPVLAVLD 139
+ D + + M+ + P +A +
Sbjct: 76 YAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVH 135
Query: 140 GSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAG------GTQRLPRIVGIPLAK 193
G GG ++AL CD +AA + ++G T++ +P G G QR AK
Sbjct: 136 GYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPATGMWAYRLGPQR---------AK 186
Query: 194 ELIYTGRLVDSTEAKSIGLVNTLTP 218
L++TG + +A GL P
Sbjct: 187 RLLFTGDCITGAQAAEWGLAVEAVP 211
|
Length = 302 |
| >gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 6e-12
Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 6/171 (3%)
Query: 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
+ L ++RP+A+N +N L+ E + ++ R + V+L L +VFC GAD
Sbjct: 12 GDVCFLQLHRPEAQNTINDRLIAECMDVLD--RCEHAATIVVLEGL-PEVFCFGADFSAI 68
Query: 106 LTLNED-QIRSFVSTLRY-MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
+ + + Y + +L + P +A + G GG+ A DI +A
Sbjct: 69 AEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAP 128
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVN 214
L E +IP A L R +G A + + V + +A S GLV+
Sbjct: 129 FSLSELLFGLIP-ACVLPFLIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVD 178
|
Length = 255 |
| >gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-10
Identities = 53/216 (24%), Positives = 98/216 (45%), Gaps = 18/216 (8%)
Query: 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
PG+ + NRP+ +NA+ + + A++A D+ +R + + F AG D++
Sbjct: 14 PGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLG-TEGCFSAGNDMQDF 72
Query: 106 LTLN------EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
L +I F+ L P+++ +DG A G G + L CD+ A+
Sbjct: 73 LAAAMGGTSFGSEILDFLIA-------LAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFAS 125
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219
LA++P AG + PR++G A L+ G + A+ GL+ +
Sbjct: 126 PRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIV-- 183
Query: 220 NPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGP 255
++ A +L+ AE++A P A+++A+ + GP
Sbjct: 184 --DEEAVEAETLKAAEELAAKPPQALQIARDLMRGP 217
|
Length = 251 |
| >gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase | Back alignment and domain information |
|---|
Score = 59.0 bits (142), Expect = 9e-10
Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 6/179 (3%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
E+ + L +NRP+ NAL+ ++ +L A D V+ V+L+ + FCAG D+
Sbjct: 15 EKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGR-AFCAGGDVA 73
Query: 104 HRL-TLNEDQIR---SFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
+ + + R +F S + + + +++L+G GGG +++ R+A
Sbjct: 74 AVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIAT 133
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218
N + ET L + P G + L R+ G + + TG +D E + GL P
Sbjct: 134 ENTVFAMPETALGLFPDVGASYFLSRLPGF-FGEYVGLTGARLDGAEMLACGLATHFVP 191
|
Length = 381 |
| >gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 1e-08
Identities = 46/199 (23%), Positives = 86/199 (43%), Gaps = 19/199 (9%)
Query: 21 PNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGD 80
PNY+ + + + L + + R I +NRP + NAL +V + E+ +
Sbjct: 32 PNYAANDDLQDQVLVE---GRAKSRAAI----LNRPSSLNALTIPMVARLKRLYESWEEN 84
Query: 81 EEVRCVLLRSLVKDVFCAGADLKHRLTLNE-------DQIRSFVSTLRYMTCQLESIPVP 133
++ VL++ + FC+GAD+ ++L ++ + F L + P
Sbjct: 85 PDIGFVLMKGSGR-AFCSGADV---VSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKP 140
Query: 134 VLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAK 193
+A++DG G G +++ RV E ++ P AG + L R+ G L +
Sbjct: 141 NVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY-LGE 199
Query: 194 ELIYTGRLVDSTEAKSIGL 212
L TG+ ++ E + GL
Sbjct: 200 YLALTGQKLNGVEMIACGL 218
|
Length = 407 |
| >gnl|CDD|213787 TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 3e-08
Identities = 56/189 (29%), Positives = 83/189 (43%), Gaps = 37/189 (19%)
Query: 69 EILTAVEAIRGDE-EVRCVLLRSLVKDVFCAGADLK--------HRL--------TLNED 111
E+ AV+ IR + EVR V++ S VFC+GA++ ++ T N
Sbjct: 52 ELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGI 111
Query: 112 QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACD--IRVAASNVRMGLVET 169
+ S S L++ LA ++G+ GGG E+ALACD + V + + L E
Sbjct: 112 EDSSRHSGLKF------------LAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEV 159
Query: 170 K-LAIIPGAGGTQRL--PRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
L ++PG GG R+ R V A V AK LV+ + P+Q A
Sbjct: 160 PLLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVK--PSQFDA 217
Query: 227 YLASLRIAE 235
+A R AE
Sbjct: 218 AIAE-RAAE 225
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. Length = 546 |
| >gnl|CDD|181274 PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 7e-08
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 36/137 (26%)
Query: 69 EILTAVEAIRGDE-EVRCVLLRSLVKDVFCAGADLK------HRLTLN------------ 109
E+ A++ IR + EVR V++ S VFC+GA++ H +N
Sbjct: 56 ELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGI 115
Query: 110 EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACD--IRVAASNVRMGLV 167
ED R S L++ +A ++G+ GGG E+ALACD + V + + L
Sbjct: 116 EDSSRH--SGLKF------------IAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLP 161
Query: 168 ETK-LAIIPGAGGTQRL 183
E L ++PG GG R+
Sbjct: 162 EVPLLGVLPGTGGLTRV 178
|
Length = 550 |
| >gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 2e-07
Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 6/164 (3%)
Query: 53 MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGAD---LKH-RLTL 108
+NRP A NAL + + + D + V+++ + FCAG D L H R
Sbjct: 52 LNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGR-AFCAGGDIVSLYHLRKRG 110
Query: 109 NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVE 168
+ D IR F S+L L + P +A+L+G GGG +++ RVA E
Sbjct: 111 SPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPE 170
Query: 169 TKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGL 212
T + P AG + L + G L + L TG + E + GL
Sbjct: 171 TIIGFHPDAGASFNLSHLPG-RLGEYLGLTGLKLSGAEMLACGL 213
|
Length = 401 |
| >gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 3e-07
Identities = 41/188 (21%), Positives = 74/188 (39%), Gaps = 23/188 (12%)
Query: 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL- 106
+ + +NRP+ N + + +EI A+ D++++ ++LR + F G D
Sbjct: 15 VATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGR-AFSGGYDFGGGFQ 73
Query: 107 ----TLNED------------QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMA 150
+ D R T ++M + PV+A + G GG + A
Sbjct: 74 HWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMA--IWRASKPVIAQVHGWCVGGASDYA 131
Query: 151 LACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSI 210
L DI +A+ + +G T + + GA T + + K TGR + +A
Sbjct: 132 LCADIVIASDDAVIG---TPYSRMWGAYLTGMWLYRLSLAKVKWHSLTGRPLTGVQAAEA 188
Query: 211 GLVNTLTP 218
L+N P
Sbjct: 189 ELINEAVP 196
|
Length = 298 |
| >gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 6e-07
Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 4/168 (2%)
Query: 53 MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--HRLTLNE 110
+NRP+ N ++ ++V + +E D+ V ++++ + F AG DLK + ++
Sbjct: 26 LNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGR-AFSAGGDLKMFYDGRESD 84
Query: 111 DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETK 170
D V + ++ + + +A++ G GGG + + RV E
Sbjct: 85 DSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEAS 144
Query: 171 LAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218
+ G + L R+ G L + L TG ++ E + GL P
Sbjct: 145 VGFHTDCGFSYILSRLPGH-LGEYLALTGARLNGKEMVACGLATHFVP 191
|
Length = 379 |
| >gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 7e-07
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 11/181 (6%)
Query: 46 PGI--VELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
PG+ + ++ P+ N+ +V+ I+ A D +V V+ ++ FC G + K
Sbjct: 34 PGLYNAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTK 93
Query: 104 HRLTL---NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS 160
N + R ++ M + PV+ ++G GGG E+ +A D +A
Sbjct: 94 EYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQD 153
Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD---STEAKSIGLVNTLT 217
G K P G T LP ++G A + +G L + + +AK +G++ +
Sbjct: 154 LANFGQAGPKHGSAPIGGATDFLPLMIGCEQA---MVSGTLCEPWSAHKAKRLGIIMDVV 210
Query: 218 P 218
P
Sbjct: 211 P 211
|
Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 360 |
| >gnl|CDD|215151 PLN02267, PLN02267, enoyl-CoA hydratase/isomerase family protein | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 41/189 (21%), Positives = 82/189 (43%), Gaps = 23/189 (12%)
Query: 62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--HRLTLNEDQIRSFVST 119
LN TL++ I +A+ ++ VL+ + F G DL ++ V+
Sbjct: 23 LNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAK 82
Query: 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVA--------ASNVRMGLV--ET 169
LR + L S+P+P +A + G A G +AL+ D + S V +GL +
Sbjct: 83 LRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDY 142
Query: 170 KLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLA 229
+A++ G+ R +++ + + EA +G+V++ + + A
Sbjct: 143 FMALLRAKIGSPAARR--------DVLLRAAKLTAEEAVEMGIVDSA---HDSAEETVEA 191
Query: 230 SLRIAEDIA 238
++R+ E++A
Sbjct: 192 AVRLGEELA 200
|
Length = 239 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 333 | |||
| PLN02600 | 251 | enoyl-CoA hydratase | 100.0 | |
| PRK07657 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02664 | 275 | enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA | 100.0 | |
| PRK06127 | 269 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06142 | 272 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09076 | 258 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08150 | 255 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05862 | 257 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05980 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| KOG1680|consensus | 290 | 100.0 | ||
| PRK05809 | 260 | 3-hydroxybutyryl-CoA dehydratase; Validated | 100.0 | |
| TIGR02280 | 256 | PaaB1 phenylacetate degradation probable enoyl-CoA | 100.0 | |
| PRK06563 | 255 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09674 | 255 | enoyl-CoA hydratase-isomerase; Provisional | 100.0 | |
| PRK08140 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07658 | 257 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08258 | 277 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08138 | 261 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08139 | 266 | enoyl-CoA hydratase; Validated | 100.0 | |
| PRK07799 | 263 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05995 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09245 | 266 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06143 | 256 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05981 | 266 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06494 | 259 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08252 | 254 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07468 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07659 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| TIGR01929 | 259 | menB naphthoate synthase (dihydroxynaphthoic acid | 100.0 | |
| PRK05674 | 265 | gamma-carboxygeranoyl-CoA hydratase; Validated | 100.0 | |
| PRK07511 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06210 | 272 | enoyl-CoA hydratase; Provisional | 100.0 | |
| TIGR03210 | 256 | badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb | 100.0 | |
| PRK06688 | 259 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07327 | 268 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06144 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05864 | 276 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK03580 | 261 | carnitinyl-CoA dehydratase; Provisional | 100.0 | |
| PRK06495 | 257 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07396 | 273 | dihydroxynaphthoic acid synthetase; Validated | 100.0 | |
| PRK11423 | 261 | methylmalonyl-CoA decarboxylase; Provisional | 100.0 | |
| PRK08260 | 296 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07509 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09120 | 275 | p-hydroxycinnamoyl CoA hydratase/lyase; Validated | 100.0 | |
| PRK06072 | 248 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02921 | 327 | naphthoate synthase | 100.0 | |
| PRK07938 | 249 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02888 | 265 | enoyl-CoA hydratase | 100.0 | |
| PRK07260 | 255 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07854 | 243 | enoyl-CoA hydratase; Provisional | 100.0 | |
| TIGR03189 | 251 | dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy | 100.0 | |
| KOG1679|consensus | 291 | 100.0 | ||
| COG1024 | 257 | CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi | 100.0 | |
| PRK07827 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06023 | 251 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05870 | 249 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05617 | 342 | 3-hydroxyisobutyryl-CoA hydrolase; Provisional | 100.0 | |
| PRK12478 | 298 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08321 | 302 | naphthoate synthase; Validated | 100.0 | |
| PRK08259 | 254 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PF00378 | 245 | ECH: Enoyl-CoA hydratase/isomerase family; InterPr | 100.0 | |
| PLN03214 | 278 | probable enoyl-CoA hydratase/isomerase; Provisiona | 100.0 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 100.0 | |
| PLN02874 | 379 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 100.0 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 100.0 | |
| PRK07112 | 255 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 100.0 | |
| PRK06190 | 258 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07110 | 249 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 100.0 | |
| PRK05869 | 222 | enoyl-CoA hydratase; Validated | 100.0 | |
| PLN02157 | 401 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 100.0 | |
| KOG1681|consensus | 292 | 100.0 | ||
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 100.0 | |
| PRK08290 | 288 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08788 | 287 | enoyl-CoA hydratase; Validated | 100.0 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 100.0 | |
| PLN02851 | 407 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 100.0 | |
| PRK06213 | 229 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08272 | 302 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02988 | 381 | 3-hydroxyisobutyryl-CoA hydrolase | 100.0 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 100.0 | |
| TIGR03200 | 360 | dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy | 100.0 | |
| PLN02267 | 239 | enoyl-CoA hydratase/isomerase family protein | 100.0 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 100.0 | |
| COG0447 | 282 | MenB Dihydroxynaphthoic acid synthase [Coenzyme me | 100.0 | |
| KOG0016|consensus | 266 | 100.0 | ||
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 100.0 | |
| KOG1682|consensus | 287 | 100.0 | ||
| cd06558 | 195 | crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy | 100.0 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 100.0 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 100.0 | |
| KOG1684|consensus | 401 | 100.0 | ||
| cd07014 | 177 | S49_SppA Signal peptide peptidase A. Signal peptid | 99.82 | |
| cd07020 | 187 | Clp_protease_NfeD_1 Nodulation formation efficienc | 99.82 | |
| cd07019 | 211 | S49_SppA_1 Signal peptide peptidase A (SppA), a se | 99.71 | |
| TIGR00705 | 584 | SppA_67K signal peptide peptidase SppA, 67K type. | 99.61 | |
| cd07022 | 214 | S49_Sppa_36K_type Signal peptide peptidase A (SppA | 99.59 | |
| cd07023 | 208 | S49_Sppa_N_C Signal peptide peptidase A (SppA), a | 99.58 | |
| cd00394 | 161 | Clp_protease_like Caseinolytic protease (ClpP) is | 99.57 | |
| cd07016 | 160 | S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP- | 99.53 | |
| TIGR00706 | 207 | SppA_dom signal peptide peptidase SppA, 36K type. | 99.52 | |
| cd07021 | 178 | Clp_protease_NfeD_like Nodulation formation effici | 99.36 | |
| cd07018 | 222 | S49_SppA_67K_type Signal peptide peptidase A (SppA | 99.36 | |
| KOG1683|consensus | 380 | 99.09 | ||
| PRK10949 | 618 | protease 4; Provisional | 98.96 | |
| cd07015 | 172 | Clp_protease_NfeD Nodulation formation efficiency | 98.94 | |
| cd07013 | 162 | S14_ClpP Caseinolytic protease (ClpP) is an ATP-de | 98.79 | |
| PRK00277 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 98.65 | |
| PRK11778 | 330 | putative inner membrane peptidase; Provisional | 98.63 | |
| PRK12319 | 256 | acetyl-CoA carboxylase subunit alpha; Provisional | 98.6 | |
| PRK12553 | 207 | ATP-dependent Clp protease proteolytic subunit; Re | 98.55 | |
| CHL00198 | 322 | accA acetyl-CoA carboxylase carboxyltransferase al | 98.54 | |
| cd07017 | 171 | S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP- | 98.54 | |
| COG0616 | 317 | SppA Periplasmic serine proteases (ClpP class) [Po | 98.49 | |
| PLN03230 | 431 | acetyl-coenzyme A carboxylase carboxyl transferase | 98.45 | |
| PRK05724 | 319 | acetyl-CoA carboxylase carboxyltransferase subunit | 98.44 | |
| TIGR00513 | 316 | accA acetyl-CoA carboxylase, carboxyl transferase, | 98.44 | |
| PRK14512 | 197 | ATP-dependent Clp protease proteolytic subunit; Pr | 98.41 | |
| PLN03229 | 762 | acetyl-coenzyme A carboxylase carboxyl transferase | 98.37 | |
| PF00574 | 182 | CLP_protease: Clp protease; InterPro: IPR001907 In | 98.36 | |
| CHL00028 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 98.27 | |
| TIGR00493 | 191 | clpP ATP-dependent Clp protease, proteolytic subun | 98.19 | |
| PF01343 | 154 | Peptidase_S49: Peptidase family S49 peptidase clas | 98.15 | |
| PF01972 | 285 | SDH_sah: Serine dehydrogenase proteinase; InterPro | 98.13 | |
| TIGR03133 | 274 | malonate_beta malonate decarboxylase, beta subunit | 98.08 | |
| TIGR00705 | 584 | SppA_67K signal peptide peptidase SppA, 67K type. | 98.08 | |
| PRK12551 | 196 | ATP-dependent Clp protease proteolytic subunit; Re | 98.01 | |
| PRK14514 | 221 | ATP-dependent Clp protease proteolytic subunit; Pr | 97.99 | |
| TIGR03134 | 238 | malonate_gamma malonate decarboxylase, gamma subun | 97.98 | |
| PRK14513 | 201 | ATP-dependent Clp protease proteolytic subunit; Pr | 97.93 | |
| COG1030 | 436 | NfeD Membrane-bound serine protease (ClpP class) [ | 97.91 | |
| PF13766 | 118 | ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PD | 97.86 | |
| PRK07189 | 301 | malonate decarboxylase subunit beta; Reviewed | 97.86 | |
| PRK05654 | 292 | acetyl-CoA carboxylase subunit beta; Validated | 97.84 | |
| PRK10949 | 618 | protease 4; Provisional | 97.77 | |
| TIGR00515 | 285 | accD acetyl-CoA carboxylase, carboxyl transferase, | 97.68 | |
| PRK12552 | 222 | ATP-dependent Clp protease-like protein; Reviewed | 97.44 | |
| CHL00174 | 296 | accD acetyl-CoA carboxylase beta subunit; Reviewed | 97.44 | |
| TIGR01117 | 512 | mmdA methylmalonyl-CoA decarboxylase alpha subunit | 97.43 | |
| PF01039 | 493 | Carboxyl_trans: Carboxyl transferase domain; Inter | 97.37 | |
| COG0740 | 200 | ClpP Protease subunit of ATP-dependent Clp proteas | 97.23 | |
| TIGR01117 | 512 | mmdA methylmalonyl-CoA decarboxylase alpha subunit | 97.11 | |
| COG0825 | 317 | AccA Acetyl-CoA carboxylase alpha subunit [Lipid m | 97.1 | |
| PLN02820 | 569 | 3-methylcrotonyl-CoA carboxylase, beta chain | 96.96 | |
| PLN02157 | 401 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 96.5 | |
| PF01039 | 493 | Carboxyl_trans: Carboxyl transferase domain; Inter | 95.34 | |
| PLN02820 | 569 | 3-methylcrotonyl-CoA carboxylase, beta chain | 95.2 | |
| COG0777 | 294 | AccD Acetyl-CoA carboxylase beta subunit [Lipid me | 95.06 | |
| COG4799 | 526 | Acetyl-CoA carboxylase, carboxyltransferase compon | 94.09 | |
| KOG0840|consensus | 275 | 93.22 | ||
| COG4799 | 526 | Acetyl-CoA carboxylase, carboxyltransferase compon | 90.52 |
| >PLN02600 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-57 Score=417.01 Aligned_cols=251 Identities=48% Similarity=0.844 Sum_probs=233.5
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
++++|++||||||+++|+||.+|+.+|.+++++++.|+++++|||||.++++||+|.|++++..........+...++.+
T Consensus 1 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 80 (251)
T PLN02600 1 PDSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRST 80 (251)
T ss_pred CCCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999867899999999987654333344556667788
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|+++|++++
T Consensus 81 ~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~ 160 (251)
T PLN02600 81 FSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIG 160 (251)
T ss_pred HHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
++||+++||||+|+|+ +++++++.++|++|+..+|.+++.+|++++ .....
T Consensus 161 a~eA~~~Glv~~vv~~----~~~~~~a~~~a~~la~~~p~a~~~~K~~l~---~~~~~---------------------- 211 (251)
T PLN02600 161 AREAASMGLVNYCVPA----GEAYEKALELAQEINQKGPLAIKMAKKAIN---EGSEV---------------------- 211 (251)
T ss_pred HHHHHHcCCCcEeeCh----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHccC----------------------
Confidence 9999999999999995 789999999999999999999999999998 65544
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++++.++.|...+..++.++|++||+++|+|||+|+|+++
T Consensus 212 ----------~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~~~~ 251 (251)
T PLN02600 212 ----------DMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPVYTGK 251 (251)
T ss_pred ----------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCCCC
Confidence 7899999999999999999999999999999999999875
|
|
| >PRK07657 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-56 Score=412.87 Aligned_cols=251 Identities=49% Similarity=0.793 Sum_probs=233.7
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
.+++|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||+|.++++||+|.|++++.....+....+...++.+
T Consensus 10 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 89 (260)
T PRK07657 10 VTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTT 89 (260)
T ss_pred ccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999944699999999987654333444555667888
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++
T Consensus 90 ~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~ 169 (260)
T PRK07657 90 MEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRIS 169 (260)
T ss_pred HHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
++||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 170 a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~---~~~~~---------------------- 220 (260)
T PRK07657 170 AQEAKEIGLVEFVVPA----HLLEEKAIEIAEKIASNGPIAVRQAKEAIS---NGIQV---------------------- 220 (260)
T ss_pred HHHHHHcCCCCeecCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhccC----------------------
Confidence 9999999999999995 789999999999999999999999999999 66554
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++++++..|...+..++.++|++||+++|++||+|+|+|+
T Consensus 221 ----------~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~~~~~ 260 (260)
T PRK07657 221 ----------DLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPMYKGE 260 (260)
T ss_pred ----------CHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCCCCC
Confidence 7899999999999999999999999999999999999985
|
|
| >PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-56 Score=414.82 Aligned_cols=261 Identities=29% Similarity=0.456 Sum_probs=234.3
Q ss_pred cceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC----
Q psy503 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN---- 109 (333)
Q Consensus 34 ~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~---- 109 (333)
|..+.+.....+++|++|+||||+++|++|.+|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++....
T Consensus 4 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~-g~~FcaG~Dl~~~~~~~~~~~ 82 (275)
T PLN02664 4 YKTLEIIQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGA-GDHFCSGIDLKTLNSISEQSS 82 (275)
T ss_pred ccceEEEEecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECC-CCceeeCcChHHhhhcccccc
Confidence 3334444455689999999999999999999999999999999999999999999998 89999999999875321
Q ss_pred -------HHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhh
Q psy503 110 -------EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQR 182 (333)
Q Consensus 110 -------~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~ 182 (333)
.+....+...+++++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~ 162 (275)
T PLN02664 83 SGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQR 162 (275)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHH
Confidence 0112233445667888999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCccc
Q psy503 183 LPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYR 262 (333)
Q Consensus 183 L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~ 262 (333)
|++++|..++++++++|++++|+||+++||||+|||+ .+++.+.+.+++++|+..+|.+++.+|+.++ .....
T Consensus 163 l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~---~~~l~~~~~~~a~~ia~~~p~a~~~~K~~l~---~~~~~- 235 (275)
T PLN02664 163 LPSIVGYGNAMELALTGRRFSGSEAKELGLVSRVFGS---KEDLDEGVRLIAEGIAAKSPLAVTGTKAVLL---RSREL- 235 (275)
T ss_pred HHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCceeeCC---hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHhcC-
Confidence 9999999999999999999999999999999999985 3678889999999999999999999999998 65554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 263 DGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++.++++.|...+..++.++|++||+++|++||+|.|+++
T Consensus 236 -------------------------------~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~~~~ 275 (275)
T PLN02664 236 -------------------------------SVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPVFAKL 275 (275)
T ss_pred -------------------------------CHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCCCCC
Confidence 7899999999999999999999999999999999999875
|
|
| >PRK06127 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-56 Score=412.86 Aligned_cols=257 Identities=30% Similarity=0.465 Sum_probs=233.9
Q ss_pred ceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc--CHHH
Q psy503 35 TQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL--NEDQ 112 (333)
Q Consensus 35 ~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~--~~~~ 112 (333)
+.+.++. +++|++|+||||+++|++|.+|+.+|.++|+.++.|+++++|||+|.++++||+|.|++++... ..+.
T Consensus 11 ~~v~~~~---~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 87 (269)
T PRK06127 11 GKLLAEK---TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEA 87 (269)
T ss_pred CceEEEE---ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHH
Confidence 3444443 6899999999999999999999999999999999999999999999955899999999987542 1222
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHH
Q psy503 113 IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192 (333)
Q Consensus 113 ~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a 192 (333)
...+...++.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus 88 ~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 167 (269)
T PRK06127 88 VAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAA 167 (269)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHH
Confidence 33445556778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCC
Q psy503 193 KELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGR 272 (333)
Q Consensus 193 ~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~ 272 (333)
++++++|++++|+||+++||||+|||+ +++.+++.++|++++..+|.+++.+|+.++ .....
T Consensus 168 ~~l~ltg~~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~---~~~~~----------- 229 (269)
T PRK06127 168 KDLFYTARRFDAAEALRIGLVHRVTAA----DDLETALADYAATIAGNAPLTLRAAKRAIA---ELLKD----------- 229 (269)
T ss_pred HHHHHcCCCCCHHHHHHcCCCCEeeCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhccC-----------
Confidence 999999999999999999999999995 789999999999999999999999999998 65554
Q ss_pred CCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 273 DGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++++.++.|...+..++.++|.+||+++|++||+|+|+++
T Consensus 230 ---------------------~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~~~~ 269 (269)
T PRK06127 230 ---------------------EPERDMAACQALVAACFDSEDYREGRAAFMEKRKPVFKGR 269 (269)
T ss_pred ---------------------CHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCCCCC
Confidence 7889999999999999999999999999999999999875
|
|
| >PRK06142 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-56 Score=413.30 Aligned_cols=250 Identities=28% Similarity=0.454 Sum_probs=230.2
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc-----------CHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL-----------NEDQ 112 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~-----------~~~~ 112 (333)
.+++|++||||||+++|++|.+|+.+|.++|++++.|+++++|||+|. |++||+|.|++++... ....
T Consensus 12 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 90 (272)
T PRK06142 12 LADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGS-GKHFSYGIDLPAMAGVFGQLGKDGLARPRTD 90 (272)
T ss_pred ecCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECC-CCceecccCHHHHhhhcccccccccccchHH
Confidence 378999999999999999999999999999999999999999999998 7899999999987431 0112
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHH
Q psy503 113 IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192 (333)
Q Consensus 113 ~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a 192 (333)
...+...+++++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|++++|..++
T Consensus 91 ~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a 170 (272)
T PRK06142 91 LRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHL 170 (272)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHhCHHHH
Confidence 33344566788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCC
Q psy503 193 KELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGR 272 (333)
Q Consensus 193 ~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~ 272 (333)
++++++|++++|+||+++||||+|+|+ .+++.+++.+++++|+..+|.+++.+|+.++ +....
T Consensus 171 ~~l~l~g~~~~a~eA~~~GLv~~vv~~---~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~---~~~~~----------- 233 (272)
T PRK06142 171 RELALTGRDIDAAEAEKIGLVNRVYDD---ADALLAAAHATAREIAAKSPLAVRGTKEVLD---YMRDH----------- 233 (272)
T ss_pred HHHHHhCCCcCHHHHHHcCCccEecCC---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhhcC-----------
Confidence 999999999999999999999999995 4779999999999999999999999999999 66554
Q ss_pred CCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 273 DGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
++.+.++.|...+..++.++|++||+++|++||+|+|+|
T Consensus 234 ---------------------~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~~~~ 272 (272)
T PRK06142 234 ---------------------RVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPEFTG 272 (272)
T ss_pred ---------------------CHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCCCCC
Confidence 789999999999999999999999999999999999986
|
|
| >PRK09076 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-56 Score=409.48 Aligned_cols=249 Identities=31% Similarity=0.456 Sum_probs=229.6
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
.+++|++||||||++ |++|.+|+.+|.++++.++.|+++++|||+|.|+++||+|.|++++..........+...+..+
T Consensus 9 ~~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (258)
T PRK09076 9 IDGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEA 87 (258)
T ss_pred EECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHH
Confidence 378999999999985 9999999999999999999999999999999955899999999987543332233445556778
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++
T Consensus 88 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~ 167 (258)
T PRK09076 88 FEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVD 167 (258)
T ss_pred HHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|++++ .....
T Consensus 168 a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~---~~~~~---------------------- 218 (258)
T PRK09076 168 AATALRIGLVEEVVEK----GEAREAALALAQKVANQSPSAVAACKTLIQ---AARNG---------------------- 218 (258)
T ss_pred HHHHHHCCCCceecCc----hhHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHhcC----------------------
Confidence 9999999999999996 778999999999999999999999999998 65544
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
++++.++.|...+..++.++|++||+++|++||+|+|++
T Consensus 219 ----------~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~~~ 257 (258)
T PRK09076 219 ----------PRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQWKN 257 (258)
T ss_pred ----------CHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCCC
Confidence 789999999999999999999999999999999999986
|
|
| >PRK08150 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-56 Score=408.33 Aligned_cols=246 Identities=30% Similarity=0.462 Sum_probs=227.3
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|++||||||++.|++|.+|+.+|.++++.++ +++++|||||. |++||+|.|++++..........+...++.++
T Consensus 9 ~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK08150 9 DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGE-GDHFCAGLDLSELRERDAGEGMHHSRRWHRVF 85 (255)
T ss_pred eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECC-CCceecCcCHHHHhhccchhHHHHHHHHHHHH
Confidence 6899999999999999999999999999999997 78999999998 88999999999876533222233445667788
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCH
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDS 204 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa 204 (333)
..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++|+|
T Consensus 86 ~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a 165 (255)
T PRK08150 86 DKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDA 165 (255)
T ss_pred HHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q psy503 205 TEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284 (333)
Q Consensus 205 ~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (333)
+||+++||||+|||+ +++.+++.++|++|+..+|.+++.+|++++ .....
T Consensus 166 ~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~----------------------- 215 (255)
T PRK08150 166 QEGERLGLAQYLVPA----GEALDKAMELARRIAQNAPLTNFAVLNALP---RIADM----------------------- 215 (255)
T ss_pred HHHHHcCCccEeeCc----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhccC-----------------------
Confidence 999999999999996 779999999999999999999999999998 65554
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 285 ~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
+++++++.|...+..++.++|++||+++|++||+|+|++
T Consensus 216 ---------~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~~~ 254 (255)
T PRK08150 216 ---------SADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKVKP 254 (255)
T ss_pred ---------CHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCC
Confidence 788999999998999999999999999999999999986
|
|
| >PRK05862 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-56 Score=408.11 Aligned_cols=247 Identities=35% Similarity=0.534 Sum_probs=228.5
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++...... ..+...+..++
T Consensus 11 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~--~~~~~~~~~~~ 87 (257)
T PRK05862 11 RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGS-EKAFAAGADIKEMADLSFM--DVYKGDYITNW 87 (257)
T ss_pred eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECC-CCceECCcChHhHhccchh--HHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999998 8899999999987643221 12223345577
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCH
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDS 204 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa 204 (333)
.+|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|+++|++++|
T Consensus 88 ~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a 167 (257)
T PRK05862 88 EKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDA 167 (257)
T ss_pred HHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q psy503 205 TEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284 (333)
Q Consensus 205 ~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (333)
+||+++||||+|+|+ +++.+++.+++++++..+|.+++.+|++++ .....
T Consensus 168 ~eA~~~Glv~~vv~~----~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~---~~~~~----------------------- 217 (257)
T PRK05862 168 AEAERAGLVSRVVPA----DKLLDEALAAATTIASFSLPAVMMAKEAVN---RAYET----------------------- 217 (257)
T ss_pred HHHHHcCCCCEeeCH----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHhcC-----------------------
Confidence 999999999999995 789999999999999999999999999999 66554
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 285 ~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++.+++..|.+.+..++.++|++||+++|++||+|.|+|+
T Consensus 218 ---------~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~~~~~ 257 (257)
T PRK05862 218 ---------TLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPVFKHR 257 (257)
T ss_pred ---------CHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCCCCC
Confidence 7899999999999999999999999999999999999885
|
|
| >PRK05980 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-56 Score=408.60 Aligned_cols=248 Identities=35% Similarity=0.548 Sum_probs=229.0
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC----HHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN----EDQIRSFVST 119 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~----~~~~~~~~~~ 119 (333)
.+++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|.++++||+|.|++++.... ......+...
T Consensus 9 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 88 (260)
T PRK05980 9 IRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRR 88 (260)
T ss_pred EECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHH
Confidence 378999999999999999999999999999999999999999999999447999999999875421 1123345556
Q ss_pred HHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcC
Q psy503 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTG 199 (333)
Q Consensus 120 ~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG 199 (333)
++.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|
T Consensus 89 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g 168 (260)
T PRK05980 89 GQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTG 168 (260)
T ss_pred HHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHHHHHHcC
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy503 200 RLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKG 279 (333)
Q Consensus 200 ~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (333)
++++|+||+++||||+|+|+ +++.+++.+++++++..+|.+++.+|++++ .....
T Consensus 169 ~~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~p~a~~~~K~~~~---~~~~~------------------ 223 (260)
T PRK05980 169 DAFSAERALEIGLVNAVVPH----EELLPAARALARRIIRHSPVAVAAILTAVT---RGLNL------------------ 223 (260)
T ss_pred CccCHHHHHHcCCCCcccCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHhcC------------------
Confidence 99999999999999999995 779999999999999999999999999998 66554
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Q psy503 280 GESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVY 330 (333)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~ 330 (333)
++.+++..|...+..++.++|++||+++|++||+|+|
T Consensus 224 --------------~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~ 260 (260)
T PRK05980 224 --------------SIAEGLLIESEQFARMAGSADLREGLAAWIERRRPAY 260 (260)
T ss_pred --------------CHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCC
Confidence 7899999999999999999999999999999999998
|
|
| >KOG1680|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-57 Score=403.76 Aligned_cols=261 Identities=36% Similarity=0.576 Sum_probs=239.1
Q ss_pred ccCccceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC
Q psy503 30 EGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN 109 (333)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~ 109 (333)
.+.++..+.+.+...+++|++|+||||+++|+++..++.+|.++|..++.|+.+.++||||. ++.||+|.|++++....
T Consensus 29 ~~~~~~~~~~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~-gksFcsG~Dl~e~~~~~ 107 (290)
T KOG1680|consen 29 TDQEFEPIKIELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGS-GKSFCSGADLKEMKKDE 107 (290)
T ss_pred hccccCcceeEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcC-CCccccccCHHHHhhcc
Confidence 44567777888888999999999999999999999999999999999999999999999999 89999999999987643
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCH
Q psy503 110 EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGI 189 (333)
Q Consensus 110 ~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~ 189 (333)
..+. ....+.+.+..+...+||+||+|||+|+|||++|+++||+|||+++++|++|+.++|++|.+|++.+|+|.+|.
T Consensus 108 ~~~~--~~~~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~ 185 (290)
T KOG1680|consen 108 FQDV--SDGIFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGK 185 (290)
T ss_pred cccc--ccccccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhCh
Confidence 2221 11223444555558999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCC
Q psy503 190 PLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHS 269 (333)
Q Consensus 190 ~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~ 269 (333)
++|+++++||++++|+||+++||||+|||. ++++.+|.+|+++|+++||.+++..|++++ .+.+.
T Consensus 186 s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~----~~~l~eAv~l~~~Ia~~~~~~v~~~K~svn---~~~e~-------- 250 (290)
T KOG1680|consen 186 SRALEMILTGRRLGAQEAKKIGLVNKVVPS----GDALGEAVKLAEQIAKNSPLVVRADKESVN---AAYET-------- 250 (290)
T ss_pred HHHHHHHHhcCcccHHHHHhCCceeEeecc----hhHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHhhc--------
Confidence 999999999999999999999999999996 779999999999999999999999999999 77776
Q ss_pred CCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 270 PGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
++.+++..|...+...+.++|.+|||.+|.+||+|+|..
T Consensus 251 ------------------------~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~~k 289 (290)
T KOG1680|consen 251 ------------------------TLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKFSK 289 (290)
T ss_pred ------------------------cHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCccccc
Confidence 899999999999999999999999999999999999975
|
|
| >PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-55 Score=407.16 Aligned_cols=250 Identities=38% Similarity=0.585 Sum_probs=232.1
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|+++||+|.|++++..........+....+.++
T Consensus 11 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (260)
T PRK05809 11 EGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVF 90 (260)
T ss_pred eCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999438999999999876544333334445567788
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCH
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDS 204 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa 204 (333)
..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|
T Consensus 91 ~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a 170 (260)
T PRK05809 91 RKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINA 170 (260)
T ss_pred HHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q psy503 205 TEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284 (333)
Q Consensus 205 ~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (333)
+||+++||||+|+|+ +++.+++.+++++++..+|.+++.+|+.++ .....
T Consensus 171 ~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~----------------------- 220 (260)
T PRK05809 171 EEALRIGLVNKVVEP----EKLMEEAKALANKIAANAPIAVKLCKDAIN---RGMQV----------------------- 220 (260)
T ss_pred HHHHHcCCCCcccCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHhcC-----------------------
Confidence 999999999999995 789999999999999999999999999999 66555
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 285 ~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|.+.+..++.++|++||+++|++||+|+|+++
T Consensus 221 ---------~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~~~~ 260 (260)
T PRK05809 221 ---------DIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKNFKNK 260 (260)
T ss_pred ---------CHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCCC
Confidence 7899999999999999999999999999999999999985
|
|
| >TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-55 Score=406.55 Aligned_cols=249 Identities=29% Similarity=0.460 Sum_probs=227.4
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC--HHH-HHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN--EDQ-IRSFVSTL 120 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~--~~~-~~~~~~~~ 120 (333)
.+++|++||||||++.|++|.+|+.+|.++|+.++.|+ +++|||||. |++||+|.|++++.... ... ...+...+
T Consensus 5 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 82 (256)
T TIGR02280 5 LEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGA-GRGFCAGQDLSERNPTPGGAPDLGRTIETFY 82 (256)
T ss_pred EECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECC-CCCcccCcCHHHHhhccccchhHHHHHHHHH
Confidence 47899999999999999999999999999999999998 999999998 78999999999875421 111 11222334
Q ss_pred HHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 121 ~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++++|+++|+
T Consensus 83 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l~g~ 162 (256)
T TIGR02280 83 NPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGE 162 (256)
T ss_pred HHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCC
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCC
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGG 280 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (333)
+++++||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 163 ~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~~~~~~K~~l~---~~~~~------------------- 216 (256)
T TIGR02280 163 KLDARTAASWGLIWQVVDD----AALMDEAQALAVHLAAQPTRGLALTKRAIQ---AAATN------------------- 216 (256)
T ss_pred CCCHHHHHHcCCcceeeCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhcC-------------------
Confidence 9999999999999999996 789999999999999999999999999998 66554
Q ss_pred CCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 281 ESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++.+++..|...+..++.++|++||+++|++||+|+|+++
T Consensus 217 -------------~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~ 256 (256)
T TIGR02280 217 -------------SLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQFTGK 256 (256)
T ss_pred -------------CHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCCCCCC
Confidence 7899999999999999999999999999999999999874
|
This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). |
| >PRK06563 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-56 Score=407.13 Aligned_cols=250 Identities=25% Similarity=0.370 Sum_probs=225.1
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHH-
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY- 122 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~- 122 (333)
.+++|++||||||+++|++|.+|+.+|.+++++++.|+++++|||+|. |++||+|.|++++.....+....+.....+
T Consensus 5 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 83 (255)
T PRK06563 5 RRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAH-GEHFTAGLDLADVAPKLAAGGFPFPEGGIDP 83 (255)
T ss_pred EECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECC-CCCCcCCcCHHHHhhccccchhhhhhhhhHH
Confidence 368999999999999999999999999999999999999999999998 889999999998754211111112222222
Q ss_pred HHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCC
Q psy503 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV 202 (333)
Q Consensus 123 l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~i 202 (333)
+...+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..++++++++|+++
T Consensus 84 ~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~ 163 (255)
T PRK06563 84 WGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEF 163 (255)
T ss_pred HHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCCCc
Confidence 33357899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCC
Q psy503 203 DSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGES 282 (333)
Q Consensus 203 sa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (333)
+|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 164 ~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~~~---~~~~~--------------------- 215 (255)
T PRK06563 164 DAQEALRLGLVQEVVPP----GEQLERAIELAERIARAAPLGVQATLASAR---AAVRE--------------------- 215 (255)
T ss_pred CHHHHHHcCCCcEeeCH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhhcC---------------------
Confidence 99999999999999995 789999999999999999999999999998 65554
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++.++++.|...+..++.++|++||+++|++||+|.|+++
T Consensus 216 -----------~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~ 255 (255)
T PRK06563 216 -----------GEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPARFKGR 255 (255)
T ss_pred -----------CHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCCCC
Confidence 7899999999999999999999999999999999999875
|
|
| >PRK09674 enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-55 Score=405.10 Aligned_cols=248 Identities=34% Similarity=0.566 Sum_probs=229.1
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
.+++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++...... ..+......+
T Consensus 8 ~~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~--~~~~~~~~~~ 84 (255)
T PRK09674 8 RQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGN-ARFFAAGADLNEMAEKDLA--ATLNDPRPQL 84 (255)
T ss_pred eECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECC-CCceecccChHhHhccchh--hhHHHHHHHH
Confidence 478999999999999999999999999999999999999999999998 8999999999987543211 1222344567
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++++++++|+.++
T Consensus 85 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~ 164 (255)
T PRK09674 85 WQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESIT 164 (255)
T ss_pred HHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCccC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 165 a~eA~~~Glv~~vv~~----~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~---~~~~~---------------------- 215 (255)
T PRK09674 165 AQQAQQAGLVSEVFPP----ELTLERALQLASKIARHSPLALRAAKQALR---QSQEV---------------------- 215 (255)
T ss_pred HHHHHHcCCCcEecCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhhcC----------------------
Confidence 9999999999999995 779999999999999999999999999998 66554
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++.+.++.|...+..++.++|++||+++|++||+|+|+++
T Consensus 216 ----------~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~~~~~ 255 (255)
T PRK09674 216 ----------DLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPDFKGR 255 (255)
T ss_pred ----------CHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCCC
Confidence 7899999999999999999999999999999999999875
|
|
| >PRK08140 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-55 Score=404.65 Aligned_cols=248 Identities=27% Similarity=0.447 Sum_probs=226.7
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC---HHHH-HHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN---EDQI-RSFVSTL 120 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~---~~~~-~~~~~~~ 120 (333)
+++|++||||||+++|++|.+|+.+|.+++++++ |+++++|||+|. |++||+|.|++++.... .... ..+...+
T Consensus 11 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (262)
T PRK08140 11 EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGA-GRGFCAGQDLADRDVTPGGAMPDLGESIETFY 88 (262)
T ss_pred ECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECC-CCCcccCcChHHHhccccccchhhHHHHHHHH
Confidence 6899999999999999999999999999999999 999999999998 78999999999874321 1111 1222234
Q ss_pred HHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 121 ~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|+
T Consensus 89 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~ 168 (262)
T PRK08140 89 NPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGE 168 (262)
T ss_pred HHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCC
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCC
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGG 280 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (333)
+++|+||+++||||+|+|+ +++.+++.+++++|+..+|.++..+|+.++ .....
T Consensus 169 ~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~---~~~~~------------------- 222 (262)
T PRK08140 169 KLSAEQAEQWGLIWRVVDD----AALADEAQQLAAHLATQPTRGLALIKQAMN---ASATN------------------- 222 (262)
T ss_pred CcCHHHHHHcCCccEeeCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhhhC-------------------
Confidence 9999999999999999995 679999999999999999999999999999 66554
Q ss_pred CCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 281 ESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|++||+|.|+++
T Consensus 223 -------------~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~~~~ 262 (262)
T PRK08140 223 -------------TLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPRFTGR 262 (262)
T ss_pred -------------CHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCCCC
Confidence 7899999999999999999999999999999999999875
|
|
| >PRK07658 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-55 Score=404.44 Aligned_cols=249 Identities=32% Similarity=0.546 Sum_probs=230.1
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCH-HHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-DQIRSFVSTLRY 122 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~-~~~~~~~~~~~~ 122 (333)
.+++|++||||||++ |++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++..... +....+....+.
T Consensus 8 ~~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 85 (257)
T PRK07658 8 VEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGE-GRFFSAGADIKEFTSVTEAEQATELAQLGQV 85 (257)
T ss_pred eeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCceEeCcCHHHHhccCchhhHHHHHHHHHH
Confidence 378999999999985 99999999999999999999999999999998 889999999998754322 223334456677
Q ss_pred HHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCC
Q psy503 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV 202 (333)
Q Consensus 123 l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~i 202 (333)
++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|+++|+++
T Consensus 86 ~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~ 165 (257)
T PRK07658 86 TFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPI 165 (257)
T ss_pred HHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCC
Q psy503 203 DSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGES 282 (333)
Q Consensus 203 sa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (333)
+++||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|++++ .....
T Consensus 166 ~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~---~~~~~--------------------- 217 (257)
T PRK07658 166 TGAEALKWGLVNGVFPE----ETLLDDAKKLAKKIAGKSPATTRAVLELLQ---TTKSS--------------------- 217 (257)
T ss_pred CHHHHHHcCCcCeecCh----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHhcC---------------------
Confidence 99999999999999995 789999999999999999999999999998 66554
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|++||+|+|+++
T Consensus 218 -----------~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~~~~ 257 (257)
T PRK07658 218 -----------SYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPSFSGK 257 (257)
T ss_pred -----------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence 7899999999999999999999999999999999999875
|
|
| >PRK08258 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-55 Score=407.08 Aligned_cols=250 Identities=24% Similarity=0.421 Sum_probs=230.0
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc----CHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL----NEDQIRSFVST 119 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~----~~~~~~~~~~~ 119 (333)
.+++|++|+||||++.|++|.+|+.+|.++|++++.|+++++|||+|. |++||+|.|++++... .......+...
T Consensus 23 ~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~ 101 (277)
T PRK08258 23 VDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGA-GGNFCSGGDVHEIIGPLTKMDMPELLAFTRM 101 (277)
T ss_pred EECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCC-CCCcccccCHHHHhccccccChhHHHHHHHH
Confidence 378999999999999999999999999999999999999999999998 8899999999987431 12223344555
Q ss_pred HHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccC-ChhhhhhcccccCHHHHHHHHHc
Q psy503 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIP-GAGGTQRLPRIVGIPLAKELIYT 198 (333)
Q Consensus 120 ~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p-~~g~~~~L~r~iG~~~a~~lllt 198 (333)
+++++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|++++|..++++++++
T Consensus 102 ~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~lt 181 (277)
T PRK08258 102 TGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYT 181 (277)
T ss_pred HHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHHHHHc
Confidence 67888999999999999999999999999999999999999999999999999995 67889999999999999999999
Q ss_pred CCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCC
Q psy503 199 GRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSK 278 (333)
Q Consensus 199 G~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (333)
|++++|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 182 g~~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~----------------- 237 (277)
T PRK08258 182 GRSMSAEEGERWGFFNRLVEP----EELLAEAQALARRLAAGPTFAHGMTKTMLH---QEWDM----------------- 237 (277)
T ss_pred CCCCCHHHHHHcCCCcEecCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhccC-----------------
Confidence 999999999999999999995 779999999999999999999999999999 66554
Q ss_pred CCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 279 GGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++++.++.|...+..++.++|++||+++|+|||+|+|+++
T Consensus 238 ---------------~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~~~ 277 (277)
T PRK08258 238 ---------------GLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVFEGD 277 (277)
T ss_pred ---------------CHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCCCC
Confidence 7899999999999999999999999999999999999875
|
|
| >PRK08138 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-55 Score=404.62 Aligned_cols=248 Identities=33% Similarity=0.529 Sum_probs=229.5
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++..... ...+...++++
T Consensus 14 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~--~~~~~~~~~~~ 90 (261)
T PRK08138 14 PADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGG-EKVFAAGADIKEFATAGA--IEMYLRHTERY 90 (261)
T ss_pred ccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECC-CCCeeCCcCHHHHhccch--hHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999998 889999999998754321 22233456778
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++++|+++|++++
T Consensus 91 ~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~ 170 (261)
T PRK08138 91 WEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVP 170 (261)
T ss_pred HHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
++||+++||||+|+|+ +++.+++.+++++++..+|.+++.+|++++ .....
T Consensus 171 a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~---~~~~~---------------------- 221 (261)
T PRK08138 171 APEALAIGLVSEVVED----EQTLPRALELAREIARMPPLALAQIKEVVL---AGADA---------------------- 221 (261)
T ss_pred HHHHHHCCCCcEecCc----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHhcC----------------------
Confidence 9999999999999996 778999999999999999999999999998 66554
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++++++..|.+.+..++.++|++||+++|++||+|+|+++
T Consensus 222 ----------~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~~~~~ 261 (261)
T PRK08138 222 ----------PLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPAYKGK 261 (261)
T ss_pred ----------CHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCCC
Confidence 7889999999999999999999999999999999999874
|
|
| >PRK08139 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-55 Score=404.21 Aligned_cols=249 Identities=30% Similarity=0.483 Sum_probs=228.7
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC-HHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN-EDQIRSFVSTLRY 122 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~-~~~~~~~~~~~~~ 122 (333)
.+++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++.... .+....+...+.+
T Consensus 17 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 95 (266)
T PRK08139 17 DRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAA-GKAFCAGHDLKEMRAARGLAYFRALFARCSR 95 (266)
T ss_pred eeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecC-CCcceeccCHHHHhcccchhHHHHHHHHHHH
Confidence 378999999999999999999999999999999999999999999999 78999999999875432 2223344556677
Q ss_pred HHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCC
Q psy503 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV 202 (333)
Q Consensus 123 l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~i 202 (333)
++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ .++|++++|..++++++++|+++
T Consensus 96 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~~l~ltg~~~ 174 (266)
T PRK08139 96 VMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQAMEMLLTGEFI 174 (266)
T ss_pred HHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHHHHHHHcCCcc
Confidence 88899999999999999999999999999999999999999999999999998765 46799999999999999999999
Q ss_pred CHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCC
Q psy503 203 DSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGES 282 (333)
Q Consensus 203 sa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (333)
+|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 175 ~a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~--------------------- 226 (266)
T PRK08139 175 DAATAREWGLVNRVVPA----DALDAAVARLAAVIAAKSPAAVRIGKEAFY---RQAEM--------------------- 226 (266)
T ss_pred CHHHHHHcCCccEeeCh----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhccC---------------------
Confidence 99999999999999995 789999999999999999999999999999 66555
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++++.+..|...+..++.++|++||+++|++||+|+|+++
T Consensus 227 -----------~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~ 266 (266)
T PRK08139 227 -----------PLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPEWRGR 266 (266)
T ss_pred -----------CHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCCCC
Confidence 7899999999999999999999999999999999999875
|
|
| >PRK07799 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-55 Score=405.21 Aligned_cols=249 Identities=30% Similarity=0.493 Sum_probs=224.6
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHH-HHH-H-H-HHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNED-QIR-S-F-VST 119 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~-~~~-~-~-~~~ 119 (333)
.+++|++||||||+++|++|.+|+.+|.++|++++.|+++++|||||. |++||+|.|++++...... ... . + ...
T Consensus 11 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 89 (263)
T PRK07799 11 QRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGA-GGAFCAGMDLKAATKKPPGDSFKDGSYDPSR 89 (263)
T ss_pred EECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCccccccCHHHHhhccccchhhhhhhhhhH
Confidence 378999999999999999999999999999999999999999999998 7999999999987543211 111 1 1 122
Q ss_pred HHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcC
Q psy503 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTG 199 (333)
Q Consensus 120 ~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG 199 (333)
+..+ .++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|
T Consensus 90 ~~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg 168 (263)
T PRK07799 90 IDAL-LKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTG 168 (263)
T ss_pred HHHH-HHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcC
Confidence 2223 357889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy503 200 RLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKG 279 (333)
Q Consensus 200 ~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (333)
++++|+||+++||||+|||+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 169 ~~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~~~~~~~~a~~~~K~~l~---~~~~~------------------ 223 (263)
T PRK07799 169 RHITAAEAKEIGLIGHVVPD----GQALDKALELAELINANGPLAVQAILRTIR---ETEGM------------------ 223 (263)
T ss_pred CCCCHHHHHHcCCccEecCc----chHHHHHHHHHHHHHhcChHHHHHHHHHHH---HhhcC------------------
Confidence 99999999999999999996 678999999999999999999999999999 65554
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 280 GESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++.++++.|.+.+..++.++|++||+++|++||+|+|+|+
T Consensus 224 --------------~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~~~~ 263 (263)
T PRK07799 224 --------------HENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPNFQGR 263 (263)
T ss_pred --------------CHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCCCCC
Confidence 7899999999999999999999999999999999999985
|
|
| >PRK05995 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-55 Score=403.92 Aligned_cols=248 Identities=31% Similarity=0.473 Sum_probs=224.7
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc---CHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFVSTLR 121 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~---~~~~~~~~~~~~~ 121 (333)
+++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||. |++||+|.|++++... ...........++
T Consensus 11 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (262)
T PRK05995 11 RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGA-GKAFCAGADLNWMKKMAGYSDDENRADARRLA 89 (262)
T ss_pred eCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECC-CCccccCcCHHHHhhhcccCchhhhhHHHHHH
Confidence 68999999999999999999999999999999999999999999999 7899999999987432 1111122234567
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRL 201 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~ 201 (333)
+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+. +|++++|..++++++++|++
T Consensus 90 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~~a~~l~l~g~~ 168 (262)
T PRK05995 90 DMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISP-YVIRAMGERAARRYFLTAER 168 (262)
T ss_pred HHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHH-HHHHHhCHHHHHHHHHcCCc
Confidence 78889999999999999999999999999999999999999999999999999988775 58899999999999999999
Q ss_pred CCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q psy503 202 VDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281 (333)
Q Consensus 202 isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (333)
|+|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 169 ~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~-------------------- 221 (262)
T PRK05995 169 FDAAEALRLGLVHEVVPA----EALDAKVDELLAALVANSPQAVRAGKRLVR---DVAGR-------------------- 221 (262)
T ss_pred cCHHHHHHcCCCCeecCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhcC--------------------
Confidence 999999999999999985 789999999999999999999999999998 65544
Q ss_pred CCCcccccccccCHHHH-HHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 282 SKGTENQNREFQGRYSG-MEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 282 ~~~~~~~~~~~~~~~~~-l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++.+. ++.|...+..++.++|++||+++|++||+|+|+|+
T Consensus 222 ------------~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~~~~~ 262 (262)
T PRK05995 222 ------------PIDAALIADTASRIALIRATEEAREGVAAFLEKRKPAWRGR 262 (262)
T ss_pred ------------ChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCCC
Confidence 67777 88888888999999999999999999999999986
|
|
| >PRK09245 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-55 Score=404.80 Aligned_cols=249 Identities=34% Similarity=0.542 Sum_probs=227.8
Q ss_pred CCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC------HHHH-HHH
Q psy503 45 RPGIVELCMNRPQARNALNA-TLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN------EDQI-RSF 116 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~-~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~------~~~~-~~~ 116 (333)
+++|++||||||++.|++|. +|+.+|.++++.++.|+++++|||+|. |++||+|.|++++.... .... ..+
T Consensus 10 ~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 88 (266)
T PRK09245 10 DGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGA-GTAFSSGGNVKDMRARVGAFGGSPADIRQGY 88 (266)
T ss_pred ECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCcccCcCHHHHhhccccccccchhHHHHH
Confidence 68999999999999999995 999999999999999999999999998 89999999999875321 1111 223
Q ss_pred HHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHH
Q psy503 117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELI 196 (333)
Q Consensus 117 ~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~ll 196 (333)
...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++
T Consensus 89 ~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~ 168 (266)
T PRK09245 89 RHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMA 168 (266)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHHHHHHHH
Confidence 33456788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCC
Q psy503 197 YTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQG 276 (333)
Q Consensus 197 ltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~ 276 (333)
++|++++|+||+++||||+|+|+ +++.+++.+++++|+..||.+++.+|++++ .....
T Consensus 169 l~g~~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~---~~~~~--------------- 226 (266)
T PRK09245 169 FTGDAIDAATALEWGLVSRVVPA----DQLLPAARALAERIAANPPHALRLTKRLLR---EGQHA--------------- 226 (266)
T ss_pred HcCCCcCHHHHHHcCCcceecCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhhcC---------------
Confidence 99999999999999999999995 789999999999999999999999999999 65554
Q ss_pred CCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 277 SKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++++.+..|...+..++.++|++||+++|++||+|.|+++
T Consensus 227 -----------------~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~ 266 (266)
T PRK09245 227 -----------------SLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPVFTGR 266 (266)
T ss_pred -----------------CHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCCCCCC
Confidence 7889999999999999999999999999999999999985
|
|
| >PRK06143 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-55 Score=401.93 Aligned_cols=246 Identities=28% Similarity=0.471 Sum_probs=226.6
Q ss_pred eecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHH
Q psy503 42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLR 121 (333)
Q Consensus 42 ~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 121 (333)
++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|+++||+|.|++++..........+...++
T Consensus 11 ~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 90 (256)
T PRK06143 11 TRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLR 90 (256)
T ss_pred eecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999447999999999876543333445556778
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRL 201 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~ 201 (333)
.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |++|++++|++++|..++++++++|++
T Consensus 91 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a~~l~l~g~~ 169 (256)
T PRK06143 91 DLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWARTRWLLLTGET 169 (256)
T ss_pred HHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHHHHHHHHcCCc
Confidence 8899999999999999999999999999999999999999999999999998 778888999999999999999999999
Q ss_pred CCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q psy503 202 VDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281 (333)
Q Consensus 202 isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (333)
++|+||+++||||+|||+ +++.+++.+++++++..+|.+++.+|+.++ .....
T Consensus 170 ~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~-------------------- 222 (256)
T PRK06143 170 IDAAQALAWGLVDRVVPL----AELDAAVERLAASLAGCGPQALRQQKRLLR---EWEDM-------------------- 222 (256)
T ss_pred CCHHHHHHCCCcCeecCH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHccC--------------------
Confidence 999999999999999995 789999999999999999999999999999 65544
Q ss_pred CCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Q psy503 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYK 327 (333)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~ 327 (333)
++++++..|...+..++.++|++||+++|++|||
T Consensus 223 ------------~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~ 256 (256)
T PRK06143 223 ------------PLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR 256 (256)
T ss_pred ------------CHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence 7899999999999999999999999999999986
|
|
| >PRK05981 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-55 Score=403.79 Aligned_cols=249 Identities=24% Similarity=0.402 Sum_probs=228.3
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC-CceEEEEEeCCCCccccCCCchhhcccCH------HHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDE-EVRCVLLRSLVKDVFCAGADLKHRLTLNE------DQIRSFV 117 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~-~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~------~~~~~~~ 117 (333)
+++|++||||||+++|++|.+|+.+|.++++.++.|+ ++++|||+|. |++||+|.|++++..... +....+.
T Consensus 11 ~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 89 (266)
T PRK05981 11 DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGA-GRGFCTGANLQGRGSGGRESDSGGDAGAALE 89 (266)
T ss_pred ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcccccCHHhhhcccccccccchhHHHHH
Confidence 6899999999999999999999999999999999876 4999999998 789999999998753211 1122344
Q ss_pred HHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHH
Q psy503 118 STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIY 197 (333)
Q Consensus 118 ~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~lll 197 (333)
..+++++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|+.+++++++
T Consensus 90 ~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~l 169 (266)
T PRK05981 90 TAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSL 169 (266)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCC
Q psy503 198 TGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGS 277 (333)
Q Consensus 198 tG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (333)
+|++++|+||+++||||+|+|+ +++++++.+++++++..+|.+++.+|++++ .....
T Consensus 170 ~g~~~~a~eA~~~Glv~~vv~~----~~~~~~a~~~a~~l~~~~~~a~~~~K~~~~---~~~~~---------------- 226 (266)
T PRK05981 170 LGEKLPAETALQWGLVNRVVDD----AELMAEAMKLAHELANGPTVALGLIRKLYW---DSPEN---------------- 226 (266)
T ss_pred hCCCcCHHHHHHcCCceEeeCH----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---Hhhhc----------------
Confidence 9999999999999999999995 778999999999999999999999999998 65554
Q ss_pred CCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 278 KGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++.++++.|...+..++.++|++||+++|++||+|+|+++
T Consensus 227 ----------------~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~~~~ 266 (266)
T PRK05981 227 ----------------DFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQFKGR 266 (266)
T ss_pred ----------------CHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCCCC
Confidence 7899999999999999999999999999999999999874
|
|
| >PRK06494 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=400.56 Aligned_cols=248 Identities=30% Similarity=0.451 Sum_probs=221.9
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.++++||+|.|++++........ ....+..+
T Consensus 10 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~--~~~~~~~~ 87 (259)
T PRK06494 10 RKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGW--PESGFGGL 87 (259)
T ss_pred eECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchh--hhHHHHHH
Confidence 3689999999999999999999999999999999999999999999994479999999998754321111 11122333
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
. .+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++++++++|++++
T Consensus 88 ~-~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~~ 166 (259)
T PRK06494 88 T-SRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVT 166 (259)
T ss_pred H-HHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcCC
Confidence 3 345899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+++|+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 167 a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~---------------------- 217 (259)
T PRK06494 167 AREGLELGFVNEVVPA----GELLAAAERWADDILACSPLSIRASKQAVY---RGLEV---------------------- 217 (259)
T ss_pred HHHHHHcCCCcEecCH----hHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhccC----------------------
Confidence 9999999999999995 789999999999999999999999999999 65554
Q ss_pred CcccccccccCHHHHHHHH--HHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWE--GICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e--~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.| ...+..++.++|++||+++|++||+|+|+++
T Consensus 218 ----------~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~ 259 (259)
T PRK06494 218 ----------SLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPRWKGR 259 (259)
T ss_pred ----------CHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCCCCC
Confidence 788999988 4577889999999999999999999999875
|
|
| >PRK08252 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=399.13 Aligned_cols=246 Identities=33% Similarity=0.506 Sum_probs=222.3
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
.+++|++|+||||+++|++|.+|+.+|.++|++++.|+++++|||+|. |++||+|.|++++....... .....+..+
T Consensus 9 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~--~~~~~~~~~ 85 (254)
T PRK08252 9 RRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGA-GGTFCAGMDLKAFARGERPS--IPGRGFGGL 85 (254)
T ss_pred EECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECC-CCceEcCcCHHHHhcccchh--hhHHHHHHH
Confidence 378999999999999999999999999999999999999999999998 88999999999876432111 111122222
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+. ..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++
T Consensus 86 ~~--~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~ 163 (254)
T PRK08252 86 TE--RPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLT 163 (254)
T ss_pred HH--hcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCCccC
Confidence 21 4699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+|+|+ +++++++.+++++++..+|.+++.+|++++ .....
T Consensus 164 a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~---~~~~~---------------------- 214 (254)
T PRK08252 164 AERAHELGLVNRLTEP----GQALDAALELAERIAANGPLAVAASKRIVV---ESGDW---------------------- 214 (254)
T ss_pred HHHHHHcCCcceecCc----chHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhhcC----------------------
Confidence 9999999999999996 779999999999999999999999999998 65544
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++.+.++.|...+..++.++|++||+++|++||+|+|+++
T Consensus 215 ----------~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~~~~ 254 (254)
T PRK08252 215 ----------SEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPVWTGK 254 (254)
T ss_pred ----------CHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCCCC
Confidence 7899999999999999999999999999999999999875
|
|
| >PRK07468 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-54 Score=399.77 Aligned_cols=247 Identities=28% Similarity=0.429 Sum_probs=223.1
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc---CHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFVSTLR 121 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~---~~~~~~~~~~~~~ 121 (333)
+++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++... ...........+.
T Consensus 12 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (262)
T PRK07468 12 ARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGA-GKSFCAGGDLGWMRAQMTADRATRIEEARRLA 90 (262)
T ss_pred CCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECC-CCcccCCcCHHHHHhhcccchhhHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999998 8899999999986431 1111122334566
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRL 201 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~ 201 (333)
.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++ +++|..++++|+++|++
T Consensus 91 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~~a~~lll~g~~ 169 (262)
T PRK07468 91 MMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEANARRVFMSARL 169 (262)
T ss_pred HHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHHHHHHHHHhCCc
Confidence 78889999999999999999999999999999999999999999999999999999888755 55999999999999999
Q ss_pred CCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q psy503 202 VDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281 (333)
Q Consensus 202 isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (333)
++|+||+++||||+|+|+ +++.+.+.+++++++..+|.+++.+|++++ .....
T Consensus 170 ~~a~eA~~~Glv~~v~~~----~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~---~~~~~-------------------- 222 (262)
T PRK07468 170 FDAEEAVRLGLLSRVVPA----ERLDAAVEAEVTPYLSCAPGAVAAAKALVR---ALGAP-------------------- 222 (262)
T ss_pred cCHHHHHHcCCcceecCH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---hhhcc--------------------
Confidence 999999999999999995 779999999999999999999999999998 55433
Q ss_pred CCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
.+++.++.|...+..++.++|++||+++|++||+|+|++
T Consensus 223 ------------~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~~~ 261 (262)
T PRK07468 223 ------------IDEAVIDATIEALADTWETEEAREGIAAFFDKRAPAWRG 261 (262)
T ss_pred ------------ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence 578889999999999999999999999999999999986
|
|
| >PRK07659 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-54 Score=399.94 Aligned_cols=247 Identities=26% Similarity=0.394 Sum_probs=228.6
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC-HHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN-EDQIRSFVSTLRYM 123 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~-~~~~~~~~~~~~~l 123 (333)
+++|++||||||++.|++|.+|+.+|.++++.+ .|+++++|||+|. |++||+|.|++++.... .+....+...++++
T Consensus 13 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (260)
T PRK07659 13 EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGN-GRGFSAGGDIKMMLSSNDESKFDGVMNTISEI 90 (260)
T ss_pred eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECC-CCCcccccCHHHHhhccCchhHHHHHHHHHHH
Confidence 789999999999999999999999999999999 5889999999998 88999999999875432 22334556677888
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++++++++|+.++
T Consensus 91 ~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l~ltg~~~~ 170 (260)
T PRK07659 91 VVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLS 170 (260)
T ss_pred HHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHHHHhCCccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||++| + +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 171 a~eA~~~Glv~~vv-~----~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~---~~~~~---------------------- 220 (260)
T PRK07659 171 ATEALDLGLIDEVI-G----GDFQTAAKQKISEWLQKPLKAMIETKQIYC---ELNRS---------------------- 220 (260)
T ss_pred HHHHHHcCChHHHh-h----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhcC----------------------
Confidence 99999999999999 5 568899999999999999999999999998 65544
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++++.++.|...+..++.++|++||+++|++||+|+|+++
T Consensus 221 ----------~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~~~~ 260 (260)
T PRK07659 221 ----------QLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPVFKGE 260 (260)
T ss_pred ----------CHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCCCCC
Confidence 7899999999999999999999999999999999999875
|
|
| >TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-54 Score=399.54 Aligned_cols=248 Identities=31% Similarity=0.499 Sum_probs=219.6
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCH-HHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-DQIRSFVSTLRYM 123 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~-~~~~~~~~~~~~l 123 (333)
+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.++++||+|.|++++..... +........+..+
T Consensus 10 ~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (259)
T TIGR01929 10 TDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDV 89 (259)
T ss_pred CCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999994489999999987642111 0100011124567
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++++++++|++++
T Consensus 90 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~ 169 (259)
T TIGR01929 90 QRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYD 169 (259)
T ss_pred HHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHHHHHhCCccC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ ....
T Consensus 170 a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~----------------------- 219 (259)
T TIGR01929 170 AEQALDMGLVNTVVPL----ADLEKETVRWCREILQKSPMAIRMLKAALN---ADCD----------------------- 219 (259)
T ss_pred HHHHHHcCCcccccCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhc-----------------------
Confidence 9999999999999995 789999999999999999999999999998 5432
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
.....+..|...+..++.++|++||+++|++||+|+|++
T Consensus 220 ----------~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~~ 258 (259)
T TIGR01929 220 ----------GQAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPDFSK 258 (259)
T ss_pred ----------cchHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Confidence 224445567778888999999999999999999999986
|
This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches. |
| >PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=401.89 Aligned_cols=256 Identities=23% Similarity=0.375 Sum_probs=224.1
Q ss_pred cceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCH---
Q psy503 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE--- 110 (333)
Q Consensus 34 ~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~--- 110 (333)
|+.+.++ .+.++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++.....
T Consensus 4 ~~~l~~~--~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~ 80 (265)
T PRK05674 4 FQTIELI--RDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGR-GRHFSAGADLAWMQQSADLDY 80 (265)
T ss_pred cceEEEE--EcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECC-CCCcccCcCHHHHhhcccccc
Confidence 3444443 3347899999999999999999999999999999999999999999999 799999999998743211
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHH
Q psy503 111 DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIP 190 (333)
Q Consensus 111 ~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~ 190 (333)
.........+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+. .|++++|..
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~ 159 (265)
T PRK05674 81 NTNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGER 159 (265)
T ss_pred hhhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCHH
Confidence 1111222345678889999999999999999999999999999999999999999999999999987766 588999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCC
Q psy503 191 LAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSP 270 (333)
Q Consensus 191 ~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~ 270 (333)
++++++++|+.|+|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 160 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~p~a~~~~K~~l~---~~~~~--------- 223 (265)
T PRK05674 160 AARRYALTAERFDGRRARELGLLAESYPA----AELEAQVEAWIANLLLNSPQALRASKDLLR---EVGDG--------- 223 (265)
T ss_pred HHHHHHHhCcccCHHHHHHCCCcceecCH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---Hhhcc---------
Confidence 99999999999999999999999999995 789999999999999999999999999999 66554
Q ss_pred CCCCCCCCCCCCCCcccccccccCHHHHHHH-HHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 271 GRDGQGSKGGESKGTENQNREFQGRYSGMEW-EGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
++.+++.. +...+..++.++|++||+++|++||+|+|++
T Consensus 224 -----------------------~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~~~~ 263 (265)
T PRK05674 224 -----------------------ELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPAWQT 263 (265)
T ss_pred -----------------------ChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCCCCC
Confidence 67777764 4567788899999999999999999999976
|
|
| >PRK07511 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-54 Score=398.84 Aligned_cols=248 Identities=28% Similarity=0.454 Sum_probs=230.7
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc---CHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFVSTL 120 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~---~~~~~~~~~~~~ 120 (333)
.+++|++|+||||+++|++|.+|+.+|.++|++++.|+++++|||+|. |++||+|.|++++... ..+....+...+
T Consensus 9 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (260)
T PRK07511 9 REGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGA-GGFFCAGGNLNRLLENRAKPPSVQAASIDGL 87 (260)
T ss_pred eECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECC-CCCcccCcCHHHHhhcccccchhHHHHHHHH
Confidence 378999999999999999999999999999999999999999999998 8999999999987542 122334456677
Q ss_pred HHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 121 ~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|+++|+
T Consensus 88 ~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ltg~ 167 (260)
T PRK07511 88 HDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGK 167 (260)
T ss_pred HHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHHHHhCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCC
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGG 280 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (333)
+++++||+++||||+|||+ +++++++.+++++++..+|.++..+|+.++ .....
T Consensus 168 ~~~a~eA~~~Glv~~vv~~----~~~~~~a~~~a~~l~~~~~~~~~~~K~~l~---~~~~~------------------- 221 (260)
T PRK07511 168 PISAERLHALGVVNRLAEP----GQALAEALALADQLAAGSPNALARIKSLIA---DAPEA------------------- 221 (260)
T ss_pred CCCHHHHHHcCCccEeeCc----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhcC-------------------
Confidence 9999999999999999996 678999999999999999999999999999 66555
Q ss_pred CCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCC
Q psy503 281 ESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYK 331 (333)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~ 331 (333)
++.++++.|...+..++.++|+++|+++|++||+|.|+
T Consensus 222 -------------~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~~~ 259 (260)
T PRK07511 222 -------------TLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPDYK 259 (260)
T ss_pred -------------CHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCCCC
Confidence 78999999999999999999999999999999999995
|
|
| >PRK06210 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-54 Score=401.21 Aligned_cols=249 Identities=29% Similarity=0.445 Sum_probs=225.7
Q ss_pred CC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHH------HHH-
Q psy503 45 RP-GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQI------RSF- 116 (333)
Q Consensus 45 ~~-~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~------~~~- 116 (333)
++ +|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++........ ..+
T Consensus 12 ~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 90 (272)
T PRK06210 12 ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGA-GRGFCAGADMGELQTIDPSDGRRDTDVRPFV 90 (272)
T ss_pred CCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECC-CCCcccccCHHHHhccCcccccccccchhhh
Confidence 56 899999999999999999999999999999999999999999998 789999999998754221100 011
Q ss_pred ---HHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHH
Q psy503 117 ---VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAK 193 (333)
Q Consensus 117 ---~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~ 193 (333)
...+++++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+++
T Consensus 91 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~ 170 (272)
T PRK06210 91 GNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANAL 170 (272)
T ss_pred hhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhCHHHHH
Confidence 11235567789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhc-CHHHHHHHHHHhcCCCCCCcccCCCCCCCCCC
Q psy503 194 ELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHN-GPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGR 272 (333)
Q Consensus 194 ~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~-~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~ 272 (333)
+|+++|++++|+||+++||||+|+|+ +++.+++.+++++|+.. +|.++..+|+.++ +....
T Consensus 171 ~l~ltg~~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~i~~~~~p~a~~~~K~~l~---~~~~~----------- 232 (272)
T PRK06210 171 DLLLSARTFYAEEALRLGLVNRVVPP----DELMERTLAYAEDLARNVSPASMAVIKRQLY---EDAFQ----------- 232 (272)
T ss_pred HHHHcCCccCHHHHHHcCCcceecCH----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---hcccC-----------
Confidence 99999999999999999999999995 77999999999999985 9999999999999 66554
Q ss_pred CCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 273 DGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|++||+|.|+++
T Consensus 233 ---------------------~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~~~~ 272 (272)
T PRK06210 233 ---------------------TLAEATARANREMHESLQRPDFIEGVASFLEKRPPRFPGL 272 (272)
T ss_pred ---------------------CHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Confidence 7899999999999999999999999999999999999874
|
|
| >TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-54 Score=398.46 Aligned_cols=248 Identities=27% Similarity=0.432 Sum_probs=218.0
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
.+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.++++||+|.|++++..... ....+...++.+
T Consensus 8 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~ 86 (256)
T TIGR03210 8 KRNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYD-GRGTIGLPMEEL 86 (256)
T ss_pred eeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcccc-chhHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999995589999999998743211 111122345678
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+|++++++|++++
T Consensus 87 ~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~ 166 (256)
T TIGR03210 87 HSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYT 166 (256)
T ss_pred HHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHHHHHHhCCCcC
Confidence 88999999999999999999999999999999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|++++ .....
T Consensus 167 a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~---~~~~~---------------------- 217 (256)
T TIGR03210 167 AQEALAMGLVNAVVPH----DQLDAEVQKWCDEIVEKSPTAIAIAKRSFN---MDTAH---------------------- 217 (256)
T ss_pred HHHHHHcCCceeeeCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---Hhhcc----------------------
Confidence 9999999999999995 789999999999999999999999999998 54322
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
....+. .|...+..++.++|++||+++|++||+|.|++
T Consensus 218 ---------~~~~~~--~~~~~~~~~~~~~d~~e~~~af~~kr~p~~~~ 255 (256)
T TIGR03210 218 ---------QRGIAG--MGMYALKLYYDTAESREGVKAFQEKRKPEFRK 255 (256)
T ss_pred ---------cchHHH--HHHHHHHHHccChhHHHHHHHHhccCCCCCCC
Confidence 011111 24567788899999999999999999999986
|
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. |
| >PRK06688 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-54 Score=398.12 Aligned_cols=248 Identities=31% Similarity=0.499 Sum_probs=231.3
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||+|. |++||+|.|++++....... ..+...+++++
T Consensus 12 ~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~~~ 89 (259)
T PRK06688 12 EDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGA-GRAFSAGGDIKDFPKAPPKP-PDELAPVNRFL 89 (259)
T ss_pred ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCccCccCHHHHhccCcch-HHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 79999999999876533222 34556678889
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCH
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDS 204 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa 204 (333)
..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..++++++++|+++++
T Consensus 90 ~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a 169 (259)
T PRK06688 90 RAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSA 169 (259)
T ss_pred HHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHHHHhCCccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q psy503 205 TEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284 (333)
Q Consensus 205 ~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (333)
+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|+.++ .....
T Consensus 170 ~eA~~~Glv~~v~~~----~~l~~~a~~~a~~i~~~~~~a~~~~K~~l~---~~~~~----------------------- 219 (259)
T PRK06688 170 EEALRIGLVNRVVPA----AELDAEADAQAAKLAAGPASALRYTKRAIN---AATLT----------------------- 219 (259)
T ss_pred HHHHHcCCcceecCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhhC-----------------------
Confidence 999999999999995 779999999999999999999999999998 66554
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 285 ~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++++++..|.+.+..++.++++++++++|++||+|+|++.
T Consensus 220 ---------~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~~~~~ 259 (259)
T PRK06688 220 ---------ELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPDFTGF 259 (259)
T ss_pred ---------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence 7899999999999999999999999999999999999874
|
|
| >PRK07327 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-54 Score=399.91 Aligned_cols=256 Identities=25% Similarity=0.345 Sum_probs=222.3
Q ss_pred cceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc--CHH
Q psy503 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL--NED 111 (333)
Q Consensus 34 ~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~--~~~ 111 (333)
++.+.++ ..+++|++||||||+++|++|.+|+.+|.++|++++.|+++++|||||. |++||+|.|++++... ..+
T Consensus 10 ~~~i~~~--~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~ 86 (268)
T PRK07327 10 YPALRFD--RPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGE-GKAFSAGGDLALVEEMADDFE 86 (268)
T ss_pred CCeEEEE--ecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECC-CCCcccccCHHHHhhccCcHH
Confidence 3444443 3367899999999999999999999999999999999999999999998 7899999999987542 122
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHH
Q psy503 112 QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPL 191 (333)
Q Consensus 112 ~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~ 191 (333)
....++..+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 166 (268)
T PRK07327 87 VRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAK 166 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHH
Confidence 23334455677888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCC
Q psy503 192 AKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPG 271 (333)
Q Consensus 192 a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~ 271 (333)
+++++++|++++|+||+++||||+++|+ +++++++.++|++|+..+|.+++.+|++++ .....
T Consensus 167 a~~l~ltg~~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~---------- 229 (268)
T PRK07327 167 AKYYLLLCEPVSGEEAERIGLVSLAVDD----DELLPKALEVAERLAAGSQTAIRWTKYALN---NWLRM---------- 229 (268)
T ss_pred HHHHHHcCCccCHHHHHHcCCcceecCH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---Hhhhh----------
Confidence 9999999999999999999999999995 789999999999999999999999999998 43211
Q ss_pred CCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 272 RDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
....++..+..| ..++.++|++||+++|++||+|+|+|
T Consensus 230 -------------------~~~~~~~~~~~~----~~~~~~~d~~eg~~af~ekr~p~~~~ 267 (268)
T PRK07327 230 -------------------AGPTFDTSLALE----FMGFSGPDVREGLASLREKRAPDFPG 267 (268)
T ss_pred -------------------hhhhHHHHHHHH----HHHccChhHHHHHHHHHhcCCCCCCC
Confidence 000344444444 34678999999999999999999987
|
|
| >PRK06144 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-54 Score=397.59 Aligned_cols=246 Identities=29% Similarity=0.473 Sum_probs=221.9
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC-HHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN-EDQIRSFVSTLRYM 123 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~-~~~~~~~~~~~~~l 123 (333)
+++|++|+||||+++|++|.+|+.+|.+++++++.|+++++|||+|.++++||+|.|++++.... .+....+...++.+
T Consensus 15 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 94 (262)
T PRK06144 15 RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRV 94 (262)
T ss_pred eCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998547999999999875432 12223344556778
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccc-cCccCChhhhhhcccccCHHHHHHHHHcCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETK-LAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV 202 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~-~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~i 202 (333)
+..+..+||||||+|||+|+|||++|+++||+|||+++++|++||++ +|++|++|++++|++++|..++++++++|+++
T Consensus 95 ~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~ 174 (262)
T PRK06144 95 LGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLL 174 (262)
T ss_pred HHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHHHcCCCc
Confidence 88999999999999999999999999999999999999999999996 99999999999999999999999999999999
Q ss_pred CHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCC
Q psy503 203 DSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGES 282 (333)
Q Consensus 203 sa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (333)
+|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|+.++ .....
T Consensus 175 ~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~i~~~~~~a~~~~K~~l~---~~~~~--------------------- 226 (262)
T PRK06144 175 EAEEALAAGLVNEVVED----AALDARADALAELLAAHAPLTLRATKEALR---RLRRE--------------------- 226 (262)
T ss_pred CHHHHHHcCCcCeecCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---Hhhhc---------------------
Confidence 99999999999999995 789999999999999999999999999998 54332
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
.+ ..+.+.+..++.++|++||+++|++||+|+|+++
T Consensus 227 -----------~l----~~~~~~~~~~~~~~~~~e~~~af~~kr~p~~~~~ 262 (262)
T PRK06144 227 -----------GL----PDGDDLIRMCYMSEDFREGVEAFLEKRPPKWKGR 262 (262)
T ss_pred -----------CH----HHHHHHHHHHhcChHHHHHHHHHhcCCCCCCCCC
Confidence 23 3455677889999999999999999999999874
|
|
| >PRK05864 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-54 Score=399.08 Aligned_cols=251 Identities=28% Similarity=0.358 Sum_probs=221.2
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC-------HHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN-------EDQIRSF 116 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~-------~~~~~~~ 116 (333)
.+++|++|+||||+++|++|.+|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++.... .......
T Consensus 16 ~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 94 (276)
T PRK05864 16 PRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGA-GRGFSSGADHKSAGVVPHVEGLTRPTYALRS 94 (276)
T ss_pred ecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCeecCcchhhhhcccccccccchhHHHHH
Confidence 378999999999999999999999999999999999999999999998 88999999999864211 1111123
Q ss_pred HHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccC-ChhhhhhcccccCHHHHHHH
Q psy503 117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIP-GAGGTQRLPRIVGIPLAKEL 195 (333)
Q Consensus 117 ~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p-~~g~~~~L~r~iG~~~a~~l 195 (333)
...++.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|++++|..+++++
T Consensus 95 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~l 174 (276)
T PRK05864 95 MELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEI 174 (276)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhCHHHHHHH
Confidence 34566778889999999999999999999999999999999999999999999999997 68888999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCC
Q psy503 196 IYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQ 275 (333)
Q Consensus 196 lltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~ 275 (333)
+++|++++|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|+.++ .....
T Consensus 175 ~l~g~~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~p~a~~~~K~~l~---~~~~~-------------- 233 (276)
T PRK05864 175 MLTGRDVDAEEAERIGLVSRQVPD----EQLLDTCYAIAARMAGFSRPGIELTKRTLW---SGLDA-------------- 233 (276)
T ss_pred HHcCCccCHHHHHHcCCcceeeCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhccc--------------
Confidence 999999999999999999999995 789999999999999999999999999998 54321
Q ss_pred CCCCCCCCCcccccccccCHHHHHHHHHHHH-HHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 276 GSKGGESKGTENQNREFQGRYSGMEWEGICY-DRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~-~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
.++++.+..|.... ...+.++|++||+++|++||+|+|+++
T Consensus 234 -----------------~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~~~~~ 275 (276)
T PRK05864 234 -----------------ASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPVFTDD 275 (276)
T ss_pred -----------------CCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCCCCC
Confidence 04677777776532 235789999999999999999999874
|
|
| >PRK03580 carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-54 Score=396.37 Aligned_cols=249 Identities=29% Similarity=0.468 Sum_probs=222.9
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
.+++|++||||||+ .|++|.+|+.+|.++|+.++.|+++++|||+|.++++||+|.|++++....... ..+......+
T Consensus 9 ~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~~ 86 (261)
T PRK03580 9 RNGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD-ADFGPGGFAG 86 (261)
T ss_pred EECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch-hhhhhhhhHH
Confidence 37899999999995 699999999999999999999999999999999558999999999875432111 1111222345
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++++++++|++++
T Consensus 87 ~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~ 166 (261)
T PRK03580 87 LTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMD 166 (261)
T ss_pred HHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 167 a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~---------------------- 217 (261)
T PRK03580 167 AEEALRWGIVNRVVPQ----AELMDRARELAQQLVNSAPLAIAALKEIYR---ETSEM---------------------- 217 (261)
T ss_pred HHHHHHcCCCcEecCH----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHhcC----------------------
Confidence 9999999999999995 789999999999999999999999999998 65544
Q ss_pred CcccccccccCHHHHHHHHHH----HHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGI----CYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~----~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|.. .+..++.++|++||+++|++||+|+|+++
T Consensus 218 ----------~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~~ 261 (261)
T PRK03580 218 ----------PVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPVWKGR 261 (261)
T ss_pred ----------CHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCCCCCC
Confidence 78888888763 67889999999999999999999999874
|
|
| >PRK06495 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-54 Score=394.96 Aligned_cols=246 Identities=29% Similarity=0.499 Sum_probs=224.1
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc--CHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL--NEDQIRSFVSTLR 121 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~--~~~~~~~~~~~~~ 121 (333)
.+++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++... ..+....+...++
T Consensus 10 ~~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (257)
T PRK06495 10 VSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGA-GKVFCAGADLKGRPDVIKGPGDLRAHNRRTR 87 (257)
T ss_pred eeCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECC-CCCcccCcCHHhHhhccCCchhHHHHHHHHH
Confidence 37899999999998 699999999999999999999999999999998 8999999999987542 1122233445567
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRL 201 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~ 201 (333)
.++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++|++++|+.++++|+++|++
T Consensus 88 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a~~lll~g~~ 164 (257)
T PRK06495 88 ECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLTRRMMLTGYR 164 (257)
T ss_pred HHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHHHHHHHcCCe
Confidence 78889999999999999999999999999999999999999999999999996 456679999999999999999999
Q ss_pred CCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q psy503 202 VDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281 (333)
Q Consensus 202 isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (333)
++|+||+++||||+++|+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 165 ~~a~eA~~~GLv~~vv~~----~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~---~~~~~-------------------- 217 (257)
T PRK06495 165 VPAAELYRRGVIEACLPP----EELMPEAMEIAREIASKSPLATRLAKDALN---TIENM-------------------- 217 (257)
T ss_pred eCHHHHHHcCCcceecCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHhcC--------------------
Confidence 999999999999999995 779999999999999999999999999999 65554
Q ss_pred CCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|++||+|+|+++
T Consensus 218 ------------~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~~~~~ 257 (257)
T PRK06495 218 ------------SLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPVFKGR 257 (257)
T ss_pred ------------CHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCCCCCC
Confidence 7899999999999999999999999999999999999975
|
|
| >PRK07396 dihydroxynaphthoic acid synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-53 Score=397.29 Aligned_cols=248 Identities=29% Similarity=0.459 Sum_probs=219.6
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCH--HHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE--DQIRSFVSTLR 121 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~--~~~~~~~~~~~ 121 (333)
.+++|++||||||+++|++|.+|+.+|.++|+.++.|+++++|||+|.|+++||+|.|++++..... ....... ...
T Consensus 19 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~-~~~ 97 (273)
T PRK07396 19 SADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRL-NVL 97 (273)
T ss_pred ecCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhh-HHH
Confidence 3789999999999999999999999999999999999999999999984479999999998643211 1111111 234
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRL 201 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~ 201 (333)
.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++.+|++++|..++++|+++|++
T Consensus 98 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~ltg~~ 177 (273)
T PRK07396 98 DLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQ 177 (273)
T ss_pred HHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHHHHHHHhCCC
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q psy503 202 VDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281 (333)
Q Consensus 202 isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (333)
++|+||+++||||+|||+ +++.+++.++|++|+..+|.+++.+|+.++ ....
T Consensus 178 ~~A~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~--------------------- 229 (273)
T PRK07396 178 YDAQEALDMGLVNTVVPL----ADLEKETVRWCREMLQNSPMALRCLKAALN---ADCD--------------------- 229 (273)
T ss_pred cCHHHHHHcCCcCeecCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhc---------------------
Confidence 999999999999999995 789999999999999999999999999998 5422
Q ss_pred CCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
..+...+.|...+..++.++|++||+++|++||+|+|++
T Consensus 230 ------------~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~~ 268 (273)
T PRK07396 230 ------------GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPDFSK 268 (273)
T ss_pred ------------cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCCCCC
Confidence 344445567778888999999999999999999999986
|
|
| >PRK11423 methylmalonyl-CoA decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-54 Score=395.70 Aligned_cols=249 Identities=25% Similarity=0.442 Sum_probs=224.5
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLV-KDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~-g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
+++|++||||||+++|++|.+|+.+|.++++.++.|+ +++|||+|.+ +++||+|.|++++.....+ ...+...++.+
T Consensus 11 ~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~-~~~~~~~~~~l 88 (261)
T PRK11423 11 INKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRD-PLSYDDPLRQI 88 (261)
T ss_pred ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcccc-HHHHHHHHHHH
Confidence 7899999999999999999999999999999999887 9999999963 5899999999987532211 12334556778
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|+.++++++++|++++
T Consensus 89 ~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~l~g~~~~ 168 (261)
T PRK11423 89 LRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPIT 168 (261)
T ss_pred HHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHHHHHHHHcCCCcC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+|||+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 169 a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~---~~~~~---------------------- 219 (261)
T PRK11423 169 AQRALAVGILNHVVEV----EELEDFTLQMAHHISEKAPLAIAVIKEQLR---VLGEA---------------------- 219 (261)
T ss_pred HHHHHHcCCcCcccCH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---hhccc----------------------
Confidence 9999999999999995 789999999999999999999999999998 44321
Q ss_pred CcccccccccCH-HHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 284 GTENQNREFQGR-YSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 284 ~~~~~~~~~~~~-~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
..+ ++.++.|.+.+..++.++|++||+.+|++||+|+|+++
T Consensus 220 ---------~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~~~~~ 261 (261)
T PRK11423 220 ---------HPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPVFVGH 261 (261)
T ss_pred ---------CCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCCCCCC
Confidence 023 57788888888999999999999999999999999875
|
|
| >PRK08260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=399.51 Aligned_cols=250 Identities=32% Similarity=0.471 Sum_probs=220.8
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc---C------------
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---N------------ 109 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~---~------------ 109 (333)
+++|++||||||++.|++|.+|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++... .
T Consensus 11 ~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (296)
T PRK08260 11 ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGA-GRAFCAGADLSAGGNTFDLDAPRTPVEADEED 89 (296)
T ss_pred eCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECC-CCCeecCcChHHhhhccccccccccccccccc
Confidence 78999999999999999999999999999999999999999999998 7999999999986420 0
Q ss_pred -HH-HHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhccccc
Q psy503 110 -ED-QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIV 187 (333)
Q Consensus 110 -~~-~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~i 187 (333)
.. ....+...++.++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~v 169 (296)
T PRK08260 90 RADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPRLV 169 (296)
T ss_pred ccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhhHHHhh
Confidence 00 1112333456688889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhc-CHHHHHHHHHHhcCCCCCCcccCCCC
Q psy503 188 GIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHN-GPIAVRMAKRSIDGPGRGTQYRDGQS 266 (333)
Q Consensus 188 G~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~-~~~a~~~~K~~l~~~~~~~~~~~~~~ 266 (333)
|..++++|+++|++++|+||+++||||+|||+ +++++++.+++++|+.. +|.+++.+|++++ ......
T Consensus 170 G~~~A~~llltg~~~~a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~i~~~~~~~a~~~~K~~l~---~~~~~~---- 238 (296)
T PRK08260 170 GLQTALEWVYSGRVFDAQEALDGGLVRSVHPP----DELLPAARALAREIADNTSPVSVALTRQMMW---RMAGAD---- 238 (296)
T ss_pred CHHHHHHHHHcCCccCHHHHHHCCCceeecCH----HHHHHHHHHHHHHHHhcCChHHHHHHHHHHH---hcccCC----
Confidence 99999999999999999999999999999995 78999999999999995 9999999999998 543210
Q ss_pred CCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 267 THSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
.... ....|...+..++.++|++||+++|++||+|+|+++
T Consensus 239 --------------------------~~~~-~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f~~~ 278 (296)
T PRK08260 239 --------------------------HPME-AHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVFPGK 278 (296)
T ss_pred --------------------------CcHH-HHHHHHHHHHHHccChhHHHHHHHHhcCCCCCCCCC
Confidence 0233 345677788889999999999999999999999874
|
|
| >PRK07509 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=394.06 Aligned_cols=246 Identities=30% Similarity=0.516 Sum_probs=223.6
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHH---HH----HH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQI---RS----FV 117 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~---~~----~~ 117 (333)
+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++.....+.. .. ..
T Consensus 10 ~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (262)
T PRK07509 10 EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGE-GGAFCAGLDVKSVASSPGNAVKLLFKRLPGNA 88 (262)
T ss_pred eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECC-CCCcCCCcCHHHHhcccchhhhhHhhhhHHHH
Confidence 78999999999999999999999999999999999999999999998 889999999998754321111 11 11
Q ss_pred HHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHH
Q psy503 118 STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIY 197 (333)
Q Consensus 118 ~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~lll 197 (333)
..+++++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+++++++
T Consensus 89 ~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l 168 (262)
T PRK07509 89 NLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTY 168 (262)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHHHHHHHHH
Confidence 23456677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCC
Q psy503 198 TGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGS 277 (333)
Q Consensus 198 tG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (333)
+|++++|+||+++||||+++++ +.+++.+++++++..+|.++..+|+.++ .....
T Consensus 169 tg~~~~a~eA~~~Glv~~vv~~------~~~~a~~~a~~l~~~~~~~~~~~K~~l~---~~~~~---------------- 223 (262)
T PRK07509 169 TARVFSAEEALELGLVTHVSDD------PLAAALALAREIAQRSPDAIAAAKRLIN---RSWTA---------------- 223 (262)
T ss_pred cCCCcCHHHHHHcCChhhhhch------HHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHhcC----------------
Confidence 9999999999999999999974 5788999999999999999999999999 66554
Q ss_pred CCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 278 KGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
++.+++..|.+.+..++.++|++||+++|+|||+|.|++
T Consensus 224 ----------------~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~~~ 262 (262)
T PRK07509 224 ----------------SVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPKFLD 262 (262)
T ss_pred ----------------CHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCCC
Confidence 788999999999999999999999999999999999974
|
|
| >PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=396.18 Aligned_cols=254 Identities=25% Similarity=0.376 Sum_probs=224.7
Q ss_pred cceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC---H
Q psy503 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN---E 110 (333)
Q Consensus 34 ~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~---~ 110 (333)
|+.+.++. +++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++.... .
T Consensus 7 ~~~i~~~~---~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~ 82 (275)
T PRK09120 7 WDTVKVEV---EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGA-GDAWSAGMDLKEYFRETDAQP 82 (275)
T ss_pred cccEEEEE---ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcC-CCceecCcCHHHHhhccccch
Confidence 55566554 68999999999999999999999999999999999999999999998 88999999999864311 1
Q ss_pred H-HHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCH
Q psy503 111 D-QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGI 189 (333)
Q Consensus 111 ~-~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~ 189 (333)
. ....+...++.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~ 162 (275)
T PRK09120 83 EILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGH 162 (275)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCH
Confidence 1 122233445677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCC
Q psy503 190 PLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHS 269 (333)
Q Consensus 190 ~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~ 269 (333)
.++++++++|++++|+||+++||||+|||+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 163 ~~a~~llltg~~~~A~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~p~a~~~~K~~l~---~~~~~-------- 227 (275)
T PRK09120 163 RDALYYIMTGETFTGRKAAEMGLVNESVPL----AQLRARTRELAAKLLEKNPVVLRAAKDGFK---RVREL-------- 227 (275)
T ss_pred HHHHHHHhcCCccCHHHHHHcCCcceecCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHHhC--------
Confidence 999999999999999999999999999995 789999999999999999999999999999 66554
Q ss_pred CCCCCCCCCCCCCCCcccccccccCHHHHHHHHHH--HHHHHhcCc-cHHHHHHHHhccCCCCC
Q psy503 270 PGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGI--CYDRVIRTQ-DRVEGLKSFLGKYKPVY 330 (333)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~--~~~~~~~~~-d~~egi~aflekr~p~~ 330 (333)
++.+.++.|.. .+..++.++ |++||+++|++||.++.
T Consensus 228 ------------------------~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~~~~ 267 (275)
T PRK09120 228 ------------------------TWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKSYKP 267 (275)
T ss_pred ------------------------CHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcccCCc
Confidence 78888887764 345678898 89999999999987443
|
|
| >PRK06072 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-53 Score=389.71 Aligned_cols=243 Identities=23% Similarity=0.310 Sum_probs=222.4
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
.+++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++.... ...+.+.++.+
T Consensus 6 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~---~~~~~~~~~~~ 81 (248)
T PRK06072 6 SREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGE-GRAFCVGADLSEFAPDF---AIDLRETFYPI 81 (248)
T ss_pred EECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECC-CCCcccCcCHHHHhhhh---HHHHHHHHHHH
Confidence 378999999999999999999999999999999999999999999998 78999999999875321 12334556778
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|. ++++++++|++|+
T Consensus 82 ~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll~g~~~~ 160 (248)
T PRK06072 82 IREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILVLGGEFT 160 (248)
T ss_pred HHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHHhCCccC
Confidence 889999999999999999999999999999999999999999999999999999999999999997 8999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||.+ + ++++++.++|++|+..||.+++.+|+.++ +....
T Consensus 161 a~eA~~~Glv~~~-~------~~~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~---------------------- 208 (248)
T PRK06072 161 AEEAERWGLLKIS-E------DPLSDAEEMANRISNGPFQSYIAAKRMIN---LVLYN---------------------- 208 (248)
T ss_pred HHHHHHCCCcccc-c------hHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHhhc----------------------
Confidence 9999999999953 3 25788999999999999999999999998 65554
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++++.++.|.+.+..++.++|++||+++|++||+|+|+++
T Consensus 209 ----------~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~ 248 (248)
T PRK06072 209 ----------DLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPKFKGI 248 (248)
T ss_pred ----------CHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCCCCC
Confidence 7899999999999999999999999999999999999985
|
|
| >PLN02921 naphthoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-53 Score=399.51 Aligned_cols=260 Identities=26% Similarity=0.425 Sum_probs=222.1
Q ss_pred CccceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHH
Q psy503 32 RKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNED 111 (333)
Q Consensus 32 ~~~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~ 111 (333)
.+|+.+.++.. .+++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|.|++++......
T Consensus 62 ~~~~~i~~~~~-~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~ 140 (327)
T PLN02921 62 KEFTDIIYEKA-VGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYV 140 (327)
T ss_pred cCCceEEEEEe-cCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhccccc
Confidence 34554444421 25899999999999999999999999999999999999999999999944899999999976432111
Q ss_pred HHHHHHH-HHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHH
Q psy503 112 QIRSFVS-TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIP 190 (333)
Q Consensus 112 ~~~~~~~-~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~ 190 (333)
....... ...+++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 141 ~~~~~~~~~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~ 220 (327)
T PLN02921 141 GPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQK 220 (327)
T ss_pred chhHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHH
Confidence 0111111 134567789999999999999999999999999999999999999999999999999998899999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCC
Q psy503 191 LAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSP 270 (333)
Q Consensus 191 ~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~ 270 (333)
++++|+++|+.|+|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|++++ ...+.
T Consensus 221 ~A~ellltG~~~~A~eA~~~GLV~~vv~~----~~l~~~a~~~a~~la~~~p~al~~~K~~l~---~~~~~--------- 284 (327)
T PLN02921 221 KAREMWFLARFYTASEALKMGLVNTVVPL----DELEGETVKWCREILRNSPTAIRVLKSALN---AADDG--------- 284 (327)
T ss_pred HHHHHHHcCCcCCHHHHHHCCCceEEeCH----HHHHHHHHHHHHHHHccCHHHHHHHHHHHH---Hhhcc---------
Confidence 99999999999999999999999999995 789999999999999999999999999998 54322
Q ss_pred CCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 271 GRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
.......+...+..++.++|++||+++|+|||+|+|++
T Consensus 285 ------------------------~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f~~ 322 (327)
T PLN02921 285 ------------------------HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDFSK 322 (327)
T ss_pred ------------------------hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCC
Confidence 22333444577788889999999999999999999986
|
|
| >PRK07938 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-53 Score=387.87 Aligned_cols=243 Identities=24% Similarity=0.319 Sum_probs=219.4
Q ss_pred eecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCH-HHHHHHHHHH
Q psy503 42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-DQIRSFVSTL 120 (333)
Q Consensus 42 ~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~-~~~~~~~~~~ 120 (333)
++.+++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++..... .........+
T Consensus 6 ~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~-G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 83 (249)
T PRK07938 6 TTPEPGIAEVTVDYPP-VNALPSAGWFALADAITAAGADPDTRVVVLRAE-GRGFNAGVDIKELQATPGFTALIDANRGC 83 (249)
T ss_pred cccCCCEEEEEECCCC-cccCCHHHHHHHHHHHHHhhcCCCeEEEEEECC-CCceecCcCHHHHhhccchhHHHHHHHHH
Confidence 4558999999999997 599999999999999999999999999999998 899999999998754321 2222233445
Q ss_pred HHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 121 ~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++|++++|+.++++++++|+
T Consensus 84 ~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg~ 160 (249)
T PRK07938 84 FAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAA 160 (249)
T ss_pred HHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhCC
Confidence 678888999999999999999999999999999999999999999999999986 45568999999999999999999
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCC
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGG 280 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (333)
+++|+||+++||||+|||+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 161 ~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~------------------- 214 (249)
T PRK07938 161 TITAAELHHFGSVEEVVPR----DQLDEAALEVARKIAAKDTRVIRAAKEALN---GIDPQ------------------- 214 (249)
T ss_pred cCCHHHHHHCCCccEEeCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhccC-------------------
Confidence 9999999999999999995 889999999999999999999999999998 65444
Q ss_pred CCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCC
Q psy503 281 ESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKP 328 (333)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p 328 (333)
++++.++.|...+..++.++|++||+++|+|||+|
T Consensus 215 -------------~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p 249 (249)
T PRK07938 215 -------------DVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA 249 (249)
T ss_pred -------------CHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence 78889999999999999999999999999999998
|
|
| >PLN02888 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-53 Score=390.77 Aligned_cols=244 Identities=26% Similarity=0.390 Sum_probs=220.7
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
.+++|++||||||+++|++|.+|+.+|.++|++++.|+++++|||+|. |++||+|+|++++........ .....++
T Consensus 16 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~---~~~~~~~ 91 (265)
T PLN02888 16 SRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGS-GRAFCSGVDLTAAEEVFKGDV---KDVETDP 91 (265)
T ss_pred ccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECC-CCcccCCCCHHHHHhhccchh---hHHHHHH
Confidence 378999999999999999999999999999999999999999999998 789999999997643111111 1123456
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|+.++++++++|++|+
T Consensus 92 ~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~ 171 (265)
T PLN02888 92 VAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLT 171 (265)
T ss_pred HHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHHHHHhCCccC
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+|||+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 172 a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~---------------------- 222 (265)
T PLN02888 172 AETAERWGLVNHVVEE----SELLKKAREVAEAIIKNNQGMVLRYKSVIN---DGLKL---------------------- 222 (265)
T ss_pred HHHHHHcCCccEeeCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhhcC----------------------
Confidence 9999999999999995 779999999999999999999999999998 66554
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHh--cCccHHHHHHHHhccCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVI--RTQDRVEGLKSFLGKYKPVY 330 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~--~~~d~~egi~aflekr~p~~ 330 (333)
++++++..|...+..++ .++|++||+++|++||+|+=
T Consensus 223 ----------~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~ 261 (265)
T PLN02888 223 ----------DLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKK 261 (265)
T ss_pred ----------CHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCC
Confidence 78889999988887775 59999999999999999873
|
|
| >PRK07260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-53 Score=389.11 Aligned_cols=243 Identities=21% Similarity=0.321 Sum_probs=223.9
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC----HHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN----EDQIRSFVSTL 120 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~----~~~~~~~~~~~ 120 (333)
+++|++|+||||++.|++|.+|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++.... ......+.+.+
T Consensus 9 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 87 (255)
T PRK07260 9 EDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINAN-GKVFSVGGDLVEMKRAVDEDDVQSLVKIAELV 87 (255)
T ss_pred ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCcccccCHHHHHhhccccchhhHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 79999999999875321 11222344556
Q ss_pred HHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 121 ~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
++++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++++|+++|+
T Consensus 88 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~ 167 (255)
T PRK07260 88 NEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGE 167 (255)
T ss_pred HHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHHHhCC
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCC
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGG 280 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (333)
+++|+||+++||||+++|+ +++.+++.+++++++..+|.+++.+|+.++ .....
T Consensus 168 ~~sa~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~~~---~~~~~------------------- 221 (255)
T PRK07260 168 ALTAEKALEYGFVYRVAES----EKLEKTCEQLLKKLRRGSSNSYAAIKSLVW---ESFFK------------------- 221 (255)
T ss_pred ccCHHHHHHcCCcceecCH----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHhhc-------------------
Confidence 9999999999999999995 779999999999999999999999999999 65554
Q ss_pred CCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Q psy503 281 ESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYK 327 (333)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~ 327 (333)
++++.+..|...+..++.++|++||+++|++||+
T Consensus 222 -------------~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~ 255 (255)
T PRK07260 222 -------------GWEDYAKLELALQESLAFKEDFKEGVRAFSERRR 255 (255)
T ss_pred -------------CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999999986
|
|
| >PRK07854 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-53 Score=384.91 Aligned_cols=237 Identities=29% Similarity=0.448 Sum_probs=217.6
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|++||||||+++|++|.+|+.+|.+++++++.+ ++++|||||. |++||+|.|+++... ...+...+..++
T Consensus 7 ~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~-g~~F~aG~Dl~~~~~-----~~~~~~~~~~~~ 79 (243)
T PRK07854 7 DGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQ-GTVFCAGADLSGDVY-----ADDFPDALIEML 79 (243)
T ss_pred eCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECC-CCceecccCCccchh-----HHHHHHHHHHHH
Confidence 689999999999999999999999999999999865 8999999998 899999999985311 123445567788
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCH
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDS 204 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa 204 (333)
..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++++|+++|++++|
T Consensus 80 ~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a 159 (243)
T PRK07854 80 HAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTA 159 (243)
T ss_pred HHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHHcCCCcCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q psy503 205 TEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284 (333)
Q Consensus 205 ~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (333)
+||+++||||+|++. +++.+++++|+..+|.+++.+|+.++ .. .
T Consensus 160 ~eA~~~Glv~~v~~~--------~~a~~~a~~l~~~~~~a~~~~K~~l~---~~--~----------------------- 203 (243)
T PRK07854 160 EQALATGMANRIGTL--------ADAQAWAAEIAGLAPLALQHAKRVLN---DD--G----------------------- 203 (243)
T ss_pred HHHHHCCCcccccCH--------HHHHHHHHHHHhCCHHHHHHHHHHHH---cc--C-----------------------
Confidence 999999999999761 27899999999999999999999998 54 3
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 285 ~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|++||+|.|+++
T Consensus 204 ---------~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~ 243 (243)
T PRK07854 204 ---------AIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPKFQGA 243 (243)
T ss_pred ---------CHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCCCCCC
Confidence 6888999999999999999999999999999999999875
|
|
| >TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-53 Score=386.09 Aligned_cols=242 Identities=28% Similarity=0.446 Sum_probs=215.0
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++... ....+...+.+++
T Consensus 8 ~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~-g~~FcaG~Dl~~~~~~---~~~~~~~~~~~~~ 82 (251)
T TIGR03189 8 DGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAE-GPHFSFGASVAEHMPD---QCAAMLASLHKLV 82 (251)
T ss_pred eCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECC-CCceecCcChhhhCch---hHHHHHHHHHHHH
Confidence 6889999999997 699999999999999999999999999999998 8899999999975321 1223344566788
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCH
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDS 204 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa 204 (333)
..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++ ++++|++++|+.++++|+++|++++|
T Consensus 83 ~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg~~~a~~l~ltg~~~~a 161 (251)
T TIGR03189 83 IAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPA-ASCLLPERMGRVAAEDLLYSGRSIDG 161 (251)
T ss_pred HHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCc-hHHHHHHHhCHHHHHHHHHcCCCCCH
Confidence 89999999999999999999999999999999999999999999999999874 56789999999999999999999999
Q ss_pred HHHHHcCCcceecCCCCChhHHHHHHHHH-HHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 205 TEAKSIGLVNTLTPQNPNQNAAYLASLRI-AEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 205 ~eAl~~Glv~~vv~~~~~~~~l~~~a~~~-a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
+||+++||||+|+|+ .+ +++.++ +++|+..||.+++.+|++++ .....
T Consensus 162 ~eA~~~Glv~~v~~~----~~--~~a~~~~a~~la~~~p~a~~~~K~~l~---~~~~~---------------------- 210 (251)
T TIGR03189 162 AEGARIGLANAVAED----PE--NAALAWFDEHPAKLSASSLRFAVRAAR---LGMNE---------------------- 210 (251)
T ss_pred HHHHHCCCcceecCc----HH--HHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhcc----------------------
Confidence 999999999999985 22 456666 68999999999999999998 65544
Q ss_pred CcccccccccCHHHHH-HHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 284 GTENQNREFQGRYSGM-EWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l-~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++++++ ..|...+..++.++|++||+++|++||+|.|+++
T Consensus 211 ----------~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~~~ 251 (251)
T TIGR03189 211 ----------RVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPALWEDR 251 (251)
T ss_pred ----------cHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCCCCCC
Confidence 677666 3777888889999999999999999999999875
|
This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. |
| >KOG1679|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-53 Score=366.12 Aligned_cols=266 Identities=50% Similarity=0.819 Sum_probs=257.5
Q ss_pred ccceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHH
Q psy503 33 KLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ 112 (333)
Q Consensus 33 ~~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~ 112 (333)
..+....++...+.||.+|.+|||.+.|+++.-|+++|.++|+++..|+.+++|+|.+..++.||+|.||++...+++.+
T Consensus 26 ~~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~E 105 (291)
T KOG1679|consen 26 ANEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSE 105 (291)
T ss_pred CceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHH
Confidence 46777788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHH
Q psy503 113 IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192 (333)
Q Consensus 113 ~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a 192 (333)
+..|...++.++..|.++|.||||+|+|.++|||++|+|+||+|+|+++++|+++|++++++|+.|++++|+|.+|...+
T Consensus 106 v~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~ala 185 (291)
T KOG1679|consen 106 VTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALA 185 (291)
T ss_pred HHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCC
Q psy503 193 KELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGR 272 (333)
Q Consensus 193 ~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~ 272 (333)
+++++|++.+++.||..+||||++|..+|..+...++++++|++|..+.|.+++..|.+++ ++.+.
T Consensus 186 KELIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gPiavr~aKlAIn---~G~ev----------- 251 (291)
T KOG1679|consen 186 KELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGPIAVRLAKLAIN---LGMEV----------- 251 (291)
T ss_pred HhHhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCchhhhHHHHHhc---cCcee-----------
Confidence 9999999999999999999999999988777889999999999999999999999999999 88887
Q ss_pred CCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 273 DGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++..++..|...+.+.+-+.|..||+.+|-|||+|.|+|.
T Consensus 252 ---------------------diasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~y~G~ 291 (291)
T KOG1679|consen 252 ---------------------DIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPEYKGE 291 (291)
T ss_pred ---------------------cccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcCCC
Confidence 8999999999999999999999999999999999999984
|
|
| >COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-52 Score=384.75 Aligned_cols=245 Identities=37% Similarity=0.645 Sum_probs=225.8
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcc-cCHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLT-LNEDQIRSFVSTLRYM 123 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~-~~~~~~~~~~~~~~~l 123 (333)
.++|++||||||+++|++|.+|+.+|.++|+.++.|+++++|||||. |++||+|.|++.+.. ........+....+.+
T Consensus 12 ~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (257)
T COG1024 12 EDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGA-GKAFSAGADLKELLSPEDGNAAENLMQPGQDL 90 (257)
T ss_pred eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECC-CCceecccCHHHHhcccchhHHHHHHhHHHHH
Confidence 45699999999999999999999999999999999999999999999 699999999999874 2222223566677789
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+++++++||+.++
T Consensus 91 ~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~ 170 (257)
T COG1024 91 LRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPIS 170 (257)
T ss_pred HHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHHHHHHcCCcCC
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
++||+++|||++++++ ++++++.+.+++++++. +|.++..+|+.++ .....
T Consensus 171 a~eA~~~Glv~~vv~~---~~~l~~~a~~~a~~~a~-~~~a~~~~k~~~~---~~~~~---------------------- 221 (257)
T COG1024 171 AAEALELGLVDEVVPD---AEELLERALELARRLAA-PPLALAATKRLVR---AALEA---------------------- 221 (257)
T ss_pred HHHHHHcCCcCeeeCC---HHHHHHHHHHHHHHHcc-CHHHHHHHHHHHH---Hhhhc----------------------
Confidence 9999999999999996 47899999999999998 9999999999999 66554
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVY 330 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~ 330 (333)
.+++.+..|...+...+.++|++||+++|++ |+|.|
T Consensus 222 ----------~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p~~ 257 (257)
T COG1024 222 ----------DLAEALEAEALAFARLFSSEDFREGVRAFLE-RKPVF 257 (257)
T ss_pred ----------cHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCCCC
Confidence 5788889998888888899999999999999 99998
|
|
| >PRK07827 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-52 Score=385.03 Aligned_cols=244 Identities=27% Similarity=0.385 Sum_probs=222.7
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc--CHH-HHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL--NED-QIRSFVSTLR 121 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~--~~~-~~~~~~~~~~ 121 (333)
+++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++... ... ....+...+.
T Consensus 13 ~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 91 (260)
T PRK07827 13 DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHT-GGTFCAGADLSEAGGGGGDPYDAAVARAREMT 91 (260)
T ss_pred eCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC-CCCccCCcChHHHhhcccCchhHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 7899999999987542 211 1223455677
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRL 201 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~ 201 (333)
+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++++. ..++++++++|++
T Consensus 92 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~~l~l~g~~ 170 (260)
T PRK07827 92 ALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRAAARYYLTGEK 170 (260)
T ss_pred HHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHHHHHHHHhCCc
Confidence 888999999999999999999999999999999999999999999999999999999999999865 5699999999999
Q ss_pred CCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q psy503 202 VDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281 (333)
Q Consensus 202 isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (333)
++|+||+++||||+++++ +.+++.+++++|+..+|.+++.+|+.++ +....
T Consensus 171 ~~a~eA~~~Glv~~v~~~------l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~-------------------- 221 (260)
T PRK07827 171 FGAAEAARIGLVTAAADD------VDAAVAALLADLRRGSPQGLAESKALTT---AAVLA-------------------- 221 (260)
T ss_pred cCHHHHHHcCCcccchHH------HHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhcC--------------------
Confidence 999999999999999752 7889999999999999999999999999 66554
Q ss_pred CCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCC
Q psy503 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYK 331 (333)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~ 331 (333)
.+.+.++.|...+..++.++|++|++++|++||+|+|+
T Consensus 222 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~~~ 259 (260)
T PRK07827 222 ------------GFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPRWA 259 (260)
T ss_pred ------------CHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCC
Confidence 78899999999999999999999999999999999996
|
|
| >PRK06023 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-52 Score=382.92 Aligned_cols=237 Identities=22% Similarity=0.373 Sum_probs=217.0
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHH
Q psy503 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ 126 (333)
Q Consensus 47 ~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~ 126 (333)
+|++||||||++.|++|.+|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++.....+ ...+...+++++..
T Consensus 15 ~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~-~~~~~~~~~~~~~~ 92 (251)
T PRK06023 15 GVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGT-EGCFSAGNDMQDFLAAAMG-GTSFGSEILDFLIA 92 (251)
T ss_pred cEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCeecCcCHHHHhhcccc-chhhHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999998 8899999999987542111 11233455678889
Q ss_pred HhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHH
Q psy503 127 LESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTE 206 (333)
Q Consensus 127 l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~e 206 (333)
+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..++++++++|+.++++|
T Consensus 93 l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~e 172 (251)
T PRK06023 93 LAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEA 172 (251)
T ss_pred HHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcc
Q psy503 207 AKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTE 286 (333)
Q Consensus 207 Al~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (333)
|+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|+.++ .. ..
T Consensus 173 A~~~Glv~~vv~~----~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~---~~-~~------------------------- 219 (251)
T PRK06023 173 AQEAGLIWKIVDE----EAVEAETLKAAEELAAKPPQALQIARDLMR---GP-RE------------------------- 219 (251)
T ss_pred HHHcCCcceeeCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hc-hh-------------------------
Confidence 9999999999995 789999999999999999999999999998 54 23
Q ss_pred cccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcc
Q psy503 287 NQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGK 325 (333)
Q Consensus 287 ~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflek 325 (333)
++++.+..|.+.+..++.++|++||+++|++|
T Consensus 220 -------~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~ 251 (251)
T PRK06023 220 -------DILARIDEEAKHFAARLKSAEARAAFEAFMRR 251 (251)
T ss_pred -------hHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 67888998988999999999999999999985
|
|
| >PRK05870 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-52 Score=383.17 Aligned_cols=240 Identities=25% Similarity=0.331 Sum_probs=219.6
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
.+++|++|+||||+++|++|.+|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++.....+.....+..+..+
T Consensus 9 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (249)
T PRK05870 9 VDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGA-GKAFCAGADLTALGAAPGRPAEDGLRRIYDG 87 (249)
T ss_pred ccCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECC-CCCeecCcChHHHhcccccchHHHHHHHHHH
Confidence 378999999999999999999999999999999999999999999998 7899999999987643221122334556667
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++++++++|++++
T Consensus 88 ~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~ 167 (249)
T PRK05870 88 FLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFD 167 (249)
T ss_pred HHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHHHHHhCCccC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCc-ccCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQ-YRDGQSTHSPGRDGQGSKGGES 282 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 282 (333)
|+||+++||||+++ + ++.+++.++|++|+..+|.+++.+|+.++ .... .
T Consensus 168 a~eA~~~Glv~~vv-~-----~l~~~a~~~a~~la~~~~~a~~~~K~~~~---~~~~~~--------------------- 217 (249)
T PRK05870 168 AEAAVRHGLALMVA-D-----DPVAAALELAAGPAAAPRELVLATKASMR---ATASLA--------------------- 217 (249)
T ss_pred HHHHHHcCCHHHHH-h-----hHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hccccC---------------------
Confidence 99999999999999 3 37889999999999999999999999999 6655 4
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcc
Q psy503 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGK 325 (333)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflek 325 (333)
+++++++.|...+...+.++|++||+++|+|+
T Consensus 218 -----------~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~ 249 (249)
T PRK05870 218 -----------QHAAAVEFELGPQAASVQSPEFAARLAAAQRR 249 (249)
T ss_pred -----------CHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence 78999999999999999999999999999985
|
|
| >PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=400.03 Aligned_cols=250 Identities=24% Similarity=0.393 Sum_probs=224.8
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC----HHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN----EDQIRSFVST 119 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~----~~~~~~~~~~ 119 (333)
.+++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|+++||+|.|++++.... ......++..
T Consensus 9 ~~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 88 (342)
T PRK05617 9 VEGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFRE 88 (342)
T ss_pred EECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHH
Confidence 378999999999999999999999999999999999999999999999448999999999875321 1111134444
Q ss_pred HHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcC
Q psy503 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTG 199 (333)
Q Consensus 120 ~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG 199 (333)
..+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+++.| ..+++++++|
T Consensus 89 ~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~a~~llltG 167 (342)
T PRK05617 89 EYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-ALGTYLALTG 167 (342)
T ss_pred HHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HHHHHHHHcC
Confidence 567888999999999999999999999999999999999999999999999999999999999999877 6899999999
Q ss_pred CCCCHHHHHHcCCcceecCCCCChhHHHHH--------------------------------------------------
Q psy503 200 RLVDSTEAKSIGLVNTLTPQNPNQNAAYLA-------------------------------------------------- 229 (333)
Q Consensus 200 ~~isa~eAl~~Glv~~vv~~~~~~~~l~~~-------------------------------------------------- 229 (333)
++++|+||+++||||+|+|+ +++.+.
T Consensus 168 ~~i~A~eA~~~GLv~~vv~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 243 (342)
T PRK05617 168 ARISAADALYAGLADHFVPS----ADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGDTVED 243 (342)
T ss_pred CCCCHHHHHHcCCcceecCH----HHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999996 556554
Q ss_pred ------------HHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHH
Q psy503 230 ------------SLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYS 297 (333)
Q Consensus 230 ------------a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (333)
+.+++++|+.++|.+++.+|++++ +.... ++++
T Consensus 244 ~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~---~~~~~--------------------------------~l~~ 288 (342)
T PRK05617 244 IIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLR---RARGL--------------------------------TLEE 288 (342)
T ss_pred HHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHH---HhcCC--------------------------------CHHH
Confidence 889999999999999999999999 66555 7999
Q ss_pred HHHHHHHHHHHHhcCccHHHHHHHHh-cc-CCCCCCCC
Q psy503 298 GMEWEGICYDRVIRTQDRVEGLKSFL-GK-YKPVYKGV 333 (333)
Q Consensus 298 ~l~~e~~~~~~~~~~~d~~egi~afl-ek-r~p~~~~~ 333 (333)
+++.|...+..++.++|++||+++|+ +| |+|+|+++
T Consensus 289 ~~~~e~~~~~~~~~~~d~~egv~afl~ek~r~p~~~~~ 326 (342)
T PRK05617 289 CLRRELRLALAMLRSPDFVEGVRAVLIDKDRNPKWSPA 326 (342)
T ss_pred HHHHHHHHHHHHHhCCchhhccceEEEcCCCCCCCCCC
Confidence 99999999999999999999999997 76 99999874
|
|
| >PRK12478 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-52 Score=391.09 Aligned_cols=246 Identities=19% Similarity=0.265 Sum_probs=213.4
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchh-hcc----c--CH--HHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH-RLT----L--NE--DQIR 114 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~-~~~----~--~~--~~~~ 114 (333)
.+++|++||||||+++|+||.+|+.+|.++|++++.|+++++|||||. |++||+|.|+++ +.. . .. +...
T Consensus 11 ~~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 89 (298)
T PRK12478 11 TAGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGA-GRAFSGGYDFGGGFQHWGEAMMTDGRWDPGK 89 (298)
T ss_pred ccCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCcccCcCccccccccchhcccccccCchh
Confidence 478999999999999999999999999999999999999999999998 799999999986 211 0 00 0011
Q ss_pred HH---HH---HHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEecccccc-CccCChhhhhhccccc
Q psy503 115 SF---VS---TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKL-AIIPGAGGTQRLPRIV 187 (333)
Q Consensus 115 ~~---~~---~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~-Gl~p~~g~~~~L~r~i 187 (333)
.+ .. ....++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++ |++++ +.+ .+++
T Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~--~~~--~~~v 165 (298)
T PRK12478 90 DFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLT--GMW--LYRL 165 (298)
T ss_pred hhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCch--hHH--HHHh
Confidence 11 01 11335667889999999999999999999999999999999999999999997 88752 233 2469
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCC
Q psy503 188 GIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQST 267 (333)
Q Consensus 188 G~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~ 267 (333)
|..++++|+++|++|+|+||+++||||+|||+ +++.+++.++|++|+..||.+++.+|++++ ...+.
T Consensus 166 G~~~A~~llltg~~i~A~eA~~~GLV~~vv~~----~~l~~~a~~~a~~la~~~p~a~~~~K~~l~---~~~~~------ 232 (298)
T PRK12478 166 SLAKVKWHSLTGRPLTGVQAAEAELINEAVPF----ERLEARVAEVATELARIPLSQLQAQKLIVN---QAYEN------ 232 (298)
T ss_pred hHHHHHHHHHcCCccCHHHHHHcCCcceecCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHHHh------
Confidence 99999999999999999999999999999995 889999999999999999999999999998 65442
Q ss_pred CCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHH--------HHHHHHhccCCCCCCC
Q psy503 268 HSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRV--------EGLKSFLGKYKPVYKG 332 (333)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~--------egi~aflekr~p~~~~ 332 (333)
.+++++++.|...+..++.++|++ ||++||+|||+|+|.+
T Consensus 233 -------------------------~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f~~ 280 (298)
T PRK12478 233 -------------------------MGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPFGD 280 (298)
T ss_pred -------------------------cchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 158999999999999999999997 5999999999999976
|
|
| >PRK08321 naphthoate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=388.52 Aligned_cols=249 Identities=28% Similarity=0.442 Sum_probs=217.4
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC------CccccCCCchhhccc-------CH-
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVK------DVFCAGADLKHRLTL-------NE- 110 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g------~~F~~G~Dl~~~~~~-------~~- 110 (333)
+++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|+ ++||+|.|++++... ..
T Consensus 32 ~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~ 111 (302)
T PRK08321 32 DQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEA 111 (302)
T ss_pred CCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccc
Confidence 6889999999999999999999999999999999999999999999842 699999999875321 00
Q ss_pred H--HHHHHH-HHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEe-CCeEEeccccccCccCChhhhhhcccc
Q psy503 111 D--QIRSFV-STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA-SNVRMGLVETKLAIIPGAGGTQRLPRI 186 (333)
Q Consensus 111 ~--~~~~~~-~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias-~~a~f~~pe~~~Gl~p~~g~~~~L~r~ 186 (333)
+ ...... ..+.++...+..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+++++++|+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r~ 191 (302)
T PRK08321 112 DTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQ 191 (302)
T ss_pred cchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHHH
Confidence 0 000111 112346677889999999999999999999999999999999 689999999999999999999999999
Q ss_pred cCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCC
Q psy503 187 VGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQS 266 (333)
Q Consensus 187 iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~ 266 (333)
+|..++++++++|+.++|+||+++||||++||+ +++.+++.+++++|+..+|.+++.+|++++ ....
T Consensus 192 vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~------ 258 (302)
T PRK08321 192 VGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPH----AELETEALEWAREINGKSPTAMRMLKYAFN---LTDD------ 258 (302)
T ss_pred hCHHHHHHHHHcCCccCHHHHHHCCCceEeeCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhc------
Confidence 999999999999999999999999999999995 779999999999999999999999999998 5432
Q ss_pred CCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 267 THSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
...+....|.+.+..++.++|++||+++|++||+|.|++.
T Consensus 259 ---------------------------~~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~~~~ 298 (302)
T PRK08321 259 ---------------------------GLVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDWSDF 298 (302)
T ss_pred ---------------------------ccHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCCC
Confidence 2333445678888899999999999999999999999863
|
|
| >PRK08259 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-52 Score=382.10 Aligned_cols=240 Identities=30% Similarity=0.402 Sum_probs=213.4
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|++||||||+++|++|.+|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++.......... .....+.
T Consensus 10 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~-g~~FcaG~Dl~~~~~~~~~~~~~--~~~~~~~ 86 (254)
T PRK08259 10 NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGA-GGTFCAGADLKAVGTGRGNRLHP--SGDGPMG 86 (254)
T ss_pred ECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCccCCcChHHHhcccchhhhh--hhcchhh
Confidence 68999999999999999999999999999999999999999999998 89999999999875432111111 0111122
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCH
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDS 204 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa 204 (333)
..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|.+|++++|++++|..++++++++|++|+|
T Consensus 87 ~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a 166 (254)
T PRK08259 87 PSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDA 166 (254)
T ss_pred hHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCH
Confidence 23447999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q psy503 205 TEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284 (333)
Q Consensus 205 ~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (333)
+||+++||||+|||+ +++.+++.++|++|+..+|.+++.+|++++ .....
T Consensus 167 ~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~~~---~~~~~----------------------- 216 (254)
T PRK08259 167 DEALAIGLANRVVPK----GQARAAAEELAAELAAFPQTCLRADRLSAL---EQWGL----------------------- 216 (254)
T ss_pred HHHHHcCCCCEeeCh----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhhcC-----------------------
Confidence 999999999999995 789999999999999999999999999998 65544
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Q psy503 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYK 327 (333)
Q Consensus 285 ~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~ 327 (333)
++++++..|...+...+. +|++||+++|++|+.
T Consensus 217 ---------~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~ 249 (254)
T PRK08259 217 ---------PEEAALANEFAHGLAVLA-AEALEGAARFAAGAG 249 (254)
T ss_pred ---------CHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhc
Confidence 788999999888777777 999999999999655
|
|
| >PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=384.18 Aligned_cols=242 Identities=36% Similarity=0.666 Sum_probs=229.6
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
.+++|++|+||||++.|++|.+++.+|.++|+.++.|+++++||++|. ++.||+|.|++++.....+....+.+.++.+
T Consensus 4 ~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~-~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 82 (245)
T PF00378_consen 4 IEDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGG-GKAFCAGADLKEFLNSDEEEAREFFRRFQEL 82 (245)
T ss_dssp EETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEES-TSESBESB-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeec-ccccccccchhhhhccccccccccchhhccc
Confidence 379999999999999999999999999999999999999999999998 9999999999998877555677888899999
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..++++++++|++++
T Consensus 83 ~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~g~~~~ 162 (245)
T PF00378_consen 83 LSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLTGEPIS 162 (245)
T ss_dssp HHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred cccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+|+|+ +++.+++.+++++++..++.+++.+|+.++ +....
T Consensus 163 a~eA~~~Glv~~v~~~----~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~---~~~~~---------------------- 213 (245)
T PF00378_consen 163 AEEALELGLVDEVVPD----EELDEEALELAKRLAAKPPSALRATKKALN---RALEQ---------------------- 213 (245)
T ss_dssp HHHHHHTTSSSEEESG----GGHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHHHS----------------------
T ss_pred hHHHHhhcceeEEcCc----hhhhHHHHHHHHHHhcCCHHHHHHHHHHHH---HHHHh----------------------
Confidence 9999999999999996 669999999999999999999999999999 66554
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcc
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGK 325 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflek 325 (333)
.+++.++.|.+.+..++.++|++||+++|+||
T Consensus 214 ----------~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK 245 (245)
T PF00378_consen 214 ----------SLEEALEFEQDLFAECFKSEDFQEGIAAFLEK 245 (245)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred ----------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence 78999999999999999999999999999998
|
Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A .... |
| >PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=383.14 Aligned_cols=243 Identities=22% Similarity=0.308 Sum_probs=219.7
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCccccCCCchhhccc--CHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLV-KDVFCAGADLKHRLTL--NEDQIRSFVSTLR 121 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~-g~~F~~G~Dl~~~~~~--~~~~~~~~~~~~~ 121 (333)
+++|++||||||+ .|+||.+|+.+|.++|++++.|+++++|||||.+ +++||+|.|++++... ..+....+.....
T Consensus 19 ~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 97 (278)
T PLN03214 19 PGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQT 97 (278)
T ss_pred CCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHH
Confidence 5899999999985 7999999999999999999999999999999984 2799999999987532 1111223434445
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCc-cCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAI-IPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl-~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
.++.+|..+||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|+.+++++|++++|+.++++++++|+
T Consensus 98 ~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~llltg~ 177 (278)
T PLN03214 98 TFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGR 177 (278)
T ss_pred HHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHHHHcCC
Confidence 6788899999999999999999999999999999999999999999999999 598999999999999999999999999
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCC
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGG 280 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (333)
.|+++||+++||||+|||+ +++.+++.+++++|+..+|.+++.+|+.++ +....
T Consensus 178 ~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~---~~~~~------------------- 231 (278)
T PLN03214 178 LVRPAEAKQLGLIDEVVPA----AALMEAAASAMERALKLPSAARAATKALLR---EEFSA------------------- 231 (278)
T ss_pred ccCHHHHHHcCCCcEecCh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhHHH-------------------
Confidence 9999999999999999995 789999999999999999999999999999 66554
Q ss_pred CCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Q psy503 281 ESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYK 327 (333)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~ 327 (333)
+++++++.|...+..++.++|++||+++|+||.+
T Consensus 232 -------------~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~ 265 (278)
T PLN03214 232 -------------AWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLS 265 (278)
T ss_pred -------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999765
|
|
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=410.91 Aligned_cols=280 Identities=18% Similarity=0.195 Sum_probs=247.8
Q ss_pred cccccccCCCCcccccccccCccceEEEEeeecCCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHh
Q psy503 12 PARVKVTKWPNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQAR-------------NALNATLVEEILTAVEAIR 78 (333)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Itln~p~~~-------------Nalt~~~~~eL~~~l~~~~ 78 (333)
|+..+.++++++.....+.+-.|..+.+.+ +.+++|++||||||+++ |+|+.+|+.+|.++++.++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~ 311 (546)
T TIGR03222 233 PADAKGVQLTPLERTIDEDGVRYPTVDVAI-DRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLR 311 (546)
T ss_pred CcCCCceeeeehhhhcccCCcceeeEEEEE-eccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHh
Confidence 566668888888887778776677777775 45789999999999999 9999999999999999998
Q ss_pred -cCCCceEEEEEeCCCCc-cccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe-chhhhHhh-HHHHHhCC
Q psy503 79 -GDEEVRCVLLRSLVKDV-FCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL-DGSAYGGG-LEMALACD 154 (333)
Q Consensus 79 -~d~~v~vvVl~g~~g~~-F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav-~G~a~GgG-~~Lal~cD 154 (333)
+|+++++|||||. |+. ||+|.|++.............+...+.++.+|..+||||||+| ||+|+||| ++|+++||
T Consensus 312 ~~d~~vr~vVl~g~-G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD 390 (546)
T TIGR03222 312 TNELDIGLWVFRTQ-GDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAAD 390 (546)
T ss_pred hCCCCeEEEEEEcC-CCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCc
Confidence 4599999999998 676 9999999843221211122333445668889999999999999 89999999 99999999
Q ss_pred EEEE-------eCCeEEeccccccCccCChhhhhhccccc-CHHHH--HHHHHcCCCCCHHHHHHcCCcceecCCCCChh
Q psy503 155 IRVA-------ASNVRMGLVETKLAIIPGAGGTQRLPRIV-GIPLA--KELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224 (333)
Q Consensus 155 ~ria-------s~~a~f~~pe~~~Gl~p~~g~~~~L~r~i-G~~~a--~~llltG~~isa~eAl~~Glv~~vv~~~~~~~ 224 (333)
+||+ +++++|++||+++|++|++|++++|++++ |..++ ++++++|++|+|+||+++|||++|+|+ +
T Consensus 391 ~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~----~ 466 (546)
T TIGR03222 391 RSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDD----I 466 (546)
T ss_pred eeeecCCCCCCCCCCEEeCCccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCc----h
Confidence 9999 89999999999999999999999999998 99888 569999999999999999999999996 7
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHH-HHHHH
Q psy503 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSG-MEWEG 303 (333)
Q Consensus 225 ~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~e~ 303 (333)
++.+++.++|++|+..+|.+++.+|+.++ ..... +++.+ +..|.
T Consensus 467 ~l~~~a~~~a~~la~~~p~a~~~~K~~l~---~~~~~--------------------------------~~~~~~~~~e~ 511 (546)
T TIGR03222 467 DWEDEIRIALEERASFSPDALTGLEANLR---FAGPE--------------------------------TMETRIFGRLT 511 (546)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHh---hcCCc--------------------------------ChhhhHHHHHH
Confidence 79999999999999999999999999999 77665 78999 99999
Q ss_pred HHHHHHhcCccHHH---HHHHHhccCCCCCCC
Q psy503 304 ICYDRVIRTQDRVE---GLKSFLGKYKPVYKG 332 (333)
Q Consensus 304 ~~~~~~~~~~d~~e---gi~aflekr~p~~~~ 332 (333)
..+..++.++|.+| |+++|+|||+|+|+.
T Consensus 512 ~~~~~~~~~~d~~e~~~g~~af~ekr~p~f~~ 543 (546)
T TIGR03222 512 AWQNWIFNRPNAVGENGALKVYGSGKKAQFDM 543 (546)
T ss_pred HHHHHHhcCCcccchhhHHHHHccCCCCCCCc
Confidence 99999999999999 999999999999974
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=398.74 Aligned_cols=248 Identities=19% Similarity=0.322 Sum_probs=220.1
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC--HHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN--EDQIRSFVSTLRY 122 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~--~~~~~~~~~~~~~ 122 (333)
+++|++||||||+++|++|.+|+.+|.++|+.++.|+++++|||+|. |++||+|+|++++.... ......+....+.
T Consensus 18 ~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 96 (379)
T PLN02874 18 KGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGA-GRAFSAGGDLKMFYDGRESDDSCLEVVYRMYW 96 (379)
T ss_pred ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECC-CCCccCccCHHHHHhhcccchHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 78999999999874321 1122233344556
Q ss_pred HHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCC
Q psy503 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV 202 (333)
Q Consensus 123 l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~i 202 (333)
+...|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. .+++|++||+++
T Consensus 97 l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~~l~ltG~~i 175 (379)
T PLN02874 97 LCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LGEYLALTGARL 175 (379)
T ss_pred HHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HHHHHHHcCCcc
Confidence 6778999999999999999999999999999999999999999999999999999999999999886 899999999999
Q ss_pred CHHHHHHcCCcceecCCCCChhHHHH---H--------------------------------------------------
Q psy503 203 DSTEAKSIGLVNTLTPQNPNQNAAYL---A-------------------------------------------------- 229 (333)
Q Consensus 203 sa~eAl~~Glv~~vv~~~~~~~~l~~---~-------------------------------------------------- 229 (333)
+|+||+++||||+|||+ +++.+ +
T Consensus 176 ~a~eA~~~GLv~~vv~~----~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~eii 251 (379)
T PLN02874 176 NGKEMVACGLATHFVPS----EKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKDTVEEII 251 (379)
T ss_pred cHHHHHHcCCccEEeCH----HHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999996 33433 2
Q ss_pred --------------HHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCH
Q psy503 230 --------------SLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGR 295 (333)
Q Consensus 230 --------------a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (333)
|.++++.|+..+|.+++.+|++++ +.... ++
T Consensus 252 ~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~---~~~~~--------------------------------~l 296 (379)
T PLN02874 252 KAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIR---EGRKQ--------------------------------SL 296 (379)
T ss_pred HHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHH---HhccC--------------------------------CH
Confidence 347999999999999999999999 76655 89
Q ss_pred HHHHHHHHHHHHHHhc---CccHHHHHHHHh-cc-CCCCCCCC
Q psy503 296 YSGMEWEGICYDRVIR---TQDRVEGLKSFL-GK-YKPVYKGV 333 (333)
Q Consensus 296 ~~~l~~e~~~~~~~~~---~~d~~egi~afl-ek-r~p~~~~~ 333 (333)
+++++.|......++. ++|++||++||+ +| |+|+|+++
T Consensus 297 ~~~l~~e~~~~~~~~~~~~~~D~~EGv~AflidK~r~P~w~~~ 339 (379)
T PLN02874 297 AECLKKEFRLTMNILRSTVSDDVYEGIRALVIDKDNAPKWNPS 339 (379)
T ss_pred HHHHHHHHHHHHHHHhcCcCcchhhccceEEEcCCCCCCCCCC
Confidence 9999999888888777 999999999997 77 99999874
|
|
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-51 Score=409.79 Aligned_cols=280 Identities=17% Similarity=0.173 Sum_probs=247.2
Q ss_pred cccccccCCCCcccccccccCccceEEEEeeecCCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHh
Q psy503 12 PARVKVTKWPNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQAR-------------NALNATLVEEILTAVEAIR 78 (333)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Itln~p~~~-------------Nalt~~~~~eL~~~l~~~~ 78 (333)
++-.+.+.++++.++....+..|+.+.+++. .+++|++||||||+++ |+||.+|+.+|.++|+.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~ 315 (550)
T PRK08184 237 PADAKGVALTPLERTIDADGLRYRHVDVEID-RAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLR 315 (550)
T ss_pred CCCCCccccccccccccCCceeeEEEEEEEE-ccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHH
Confidence 3444588888999888777877777777764 4688999999999988 6899999999999999998
Q ss_pred c-CCCceEEEEEeCCC-CccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec-hhhhHhh-HHHHHhCC
Q psy503 79 G-DEEVRCVLLRSLVK-DVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD-GSAYGGG-LEMALACD 154 (333)
Q Consensus 79 ~-d~~v~vvVl~g~~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~-G~a~GgG-~~Lal~cD 154 (333)
. |+++++|||||. | ++||+|.|++................++.++.+|..+||||||+|| |+|+||| ++|+++||
T Consensus 316 ~~d~~vr~vVltg~-G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD 394 (550)
T PRK08184 316 TNELDIGTWVLKTE-GDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAAD 394 (550)
T ss_pred hcCCCeEEEEEEcC-CCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCC
Confidence 6 799999999998 6 5999999987432211111123334556678899999999999997 9999999 99999999
Q ss_pred EEEEe-------CCeEEeccccccCccCChhhhhhcccc-cCHHHHHHH--HHcCCCCCHHHHHHcCCcceecCCCCChh
Q psy503 155 IRVAA-------SNVRMGLVETKLAIIPGAGGTQRLPRI-VGIPLAKEL--IYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224 (333)
Q Consensus 155 ~rias-------~~a~f~~pe~~~Gl~p~~g~~~~L~r~-iG~~~a~~l--lltG~~isa~eAl~~Glv~~vv~~~~~~~ 224 (333)
+||++ ++++|++||+++|++|++|++++|+++ +|..+++++ +++|++|+|+||+++||||+|+|+ +
T Consensus 395 ~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~----~ 470 (550)
T PRK08184 395 RSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDD----I 470 (550)
T ss_pred hhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccCh----H
Confidence 99999 999999999999999999999999998 699999997 589999999999999999999996 7
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHH-HHHHH
Q psy503 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSG-MEWEG 303 (333)
Q Consensus 225 ~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~e~ 303 (333)
++.+++.++|++|+..||.+++.+|++++ ..... +++++ +..|.
T Consensus 471 ~l~~~a~~~a~~ia~~~p~a~~~~K~~l~---~~~~~--------------------------------~~~~~~~~~e~ 515 (550)
T PRK08184 471 DWEDEVRIALEERASLSPDALTGMEANLR---FAGPE--------------------------------TMETRIFGRLT 515 (550)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hcCCC--------------------------------CHHHHHHHHHH
Confidence 89999999999999999999999999999 77665 89999 99999
Q ss_pred HHHHHHhcCccHHH---HHHHHhccCCCCCCC
Q psy503 304 ICYDRVIRTQDRVE---GLKSFLGKYKPVYKG 332 (333)
Q Consensus 304 ~~~~~~~~~~d~~e---gi~aflekr~p~~~~ 332 (333)
+++..+++++|.+| |+++|+|||+|+|++
T Consensus 516 ~~~~~~~~~~d~~e~~~g~~af~ekr~~~f~~ 547 (550)
T PRK08184 516 AWQNWIFQRPNAVGEKGALKVYGTGQKAQFDW 547 (550)
T ss_pred HHHHHHhcCCcccccchHHHHhccCCCCCCCC
Confidence 99999999999999 999999999999986
|
|
| >PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-51 Score=375.74 Aligned_cols=242 Identities=19% Similarity=0.215 Sum_probs=214.5
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHH-H-HHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNED-Q-IRSFVSTLRY 122 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~-~-~~~~~~~~~~ 122 (333)
+++|++|+||||++.|++|.+|+.+|.++|+.++ +++++|||+|. |++||+|.|++++.....+ . .......+..
T Consensus 11 ~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 87 (255)
T PRK07112 11 QGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGL-PEVFCFGADFSAIAEKPDAGRADLIDAEPLYD 87 (255)
T ss_pred eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcC-CCCcccCcCHHHHhhccccchhhhhhHHHHHH
Confidence 7899999999999999999999999999999998 36999999998 8899999999987542111 1 1112344567
Q ss_pred HHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCC
Q psy503 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV 202 (333)
Q Consensus 123 l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~i 202 (333)
++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ ..+|++++|..++++++++|+++
T Consensus 88 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~~l~l~g~~~ 166 (255)
T PRK07112 88 LWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKAHYMTLMTQPV 166 (255)
T ss_pred HHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHHHHHHHHhCCcc
Confidence 88899999999999999999999999999999999999999999999999999865 45799999999999999999999
Q ss_pred CHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCC
Q psy503 203 DSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGES 282 (333)
Q Consensus 203 sa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (333)
+|+||+++||||+|+|+ ++ ..+.+++++|+..+|.+++.+|+.++ .. ..
T Consensus 167 ~a~eA~~~Glv~~vv~~----~~--~~~~~~a~~l~~~~p~a~~~~K~~~~---~~-~~--------------------- 215 (255)
T PRK07112 167 TAQQAFSWGLVDAYGAN----SD--TLLRKHLLRLRCLNKAAVARYKSYAS---TL-DD--------------------- 215 (255)
T ss_pred cHHHHHHcCCCceecCc----HH--HHHHHHHHHHHhCCHHHHHHHHHHHH---Hh-hh---------------------
Confidence 99999999999999996 32 24678999999999999999999998 53 32
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
.+.+.++.|.+.+..++.++|++||+++|++||+|.|+.
T Consensus 216 -----------~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~~~ 254 (255)
T PRK07112 216 -----------TVAAARPAALAANIEMFADPENLRKIARYVETGKFPWEA 254 (255)
T ss_pred -----------hHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCCCCC
Confidence 578889999999999999999999999999999999975
|
|
| >PRK06190 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-50 Score=369.21 Aligned_cols=243 Identities=30% Similarity=0.458 Sum_probs=218.7
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|++||||||+++|++|.+|+.+|.++|++++.|+++++|||+|. |++||+|.|++++.....+.. . ...++.++
T Consensus 11 ~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~-~-~~~~~~~~ 87 (258)
T PRK06190 11 HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGA-DPAFCAGLDLKELGGDGSAYG-A-QDALPNPS 87 (258)
T ss_pred eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECC-CCCccCCcCHHHHhcccchhh-H-HHHHHHHH
Confidence 78999999999999999999999999999999999999999999998 899999999998764322211 1 23456788
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCH
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDS 204 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa 204 (333)
..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++++++++|++++|
T Consensus 88 ~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a 167 (258)
T PRK06190 88 PAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDA 167 (258)
T ss_pred HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q psy503 205 TEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284 (333)
Q Consensus 205 ~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (333)
+||+++||||+++|+ +++++++.+++++|+..+|.+++.+|+.++ .....
T Consensus 168 ~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~----------------------- 217 (258)
T PRK06190 168 ADALRAGLVTEVVPH----DELLPRARRLAASIAGNNPAAVRALKASYD---DGAAA----------------------- 217 (258)
T ss_pred HHHHHcCCCeEecCH----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhhcC-----------------------
Confidence 999999999999995 789999999999999999999999999999 65554
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhcC---ccHHHHHHHHhccCCCC
Q psy503 285 TENQNREFQGRYSGMEWEGICYDRVIRT---QDRVEGLKSFLGKYKPV 329 (333)
Q Consensus 285 ~~~~~~~~~~~~~~l~~e~~~~~~~~~~---~d~~egi~aflekr~p~ 329 (333)
+++++++.|...+..++.+ +..++...+|..+.+.+
T Consensus 218 ---------~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 256 (258)
T PRK06190 218 ---------QTGDALALEAEAARAHNRSVSPDGIAARREAVMARGRAQ 256 (258)
T ss_pred ---------CHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhhc
Confidence 7899999999999999988 55666666666665543
|
|
| >PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-50 Score=368.34 Aligned_cols=237 Identities=22% Similarity=0.355 Sum_probs=217.9
Q ss_pred ecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHH
Q psy503 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY 122 (333)
Q Consensus 43 ~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 122 (333)
+.+++|++|+||||++.|++|.+++.+|.+++++++.|+++++|||+|. |++||+|.|++++....... ..+ .. ++
T Consensus 10 ~~~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~-~~~-~~-~~ 85 (249)
T PRK07110 10 EVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGY-PNYFATGGTQEGLLSLQTGK-GTF-TE-AN 85 (249)
T ss_pred EeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCeeCCcChHHHhhccchh-hhH-hh-HH
Confidence 3478999999999999999999999999999999999999999999998 88999999999875432211 112 22 57
Q ss_pred HHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCC
Q psy503 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV 202 (333)
Q Consensus 123 l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~i 202 (333)
++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++++++++|+++
T Consensus 86 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~ 165 (249)
T PRK07110 86 LYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYY 165 (249)
T ss_pred HHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCcc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCC
Q psy503 203 DSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGES 282 (333)
Q Consensus 203 sa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (333)
+++||+++||||+|+|+ +++.+++.+++++++..+|.+++.+|+.++ .....
T Consensus 166 ~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~--------------------- 217 (249)
T PRK07110 166 RGAELKKRGVPFPVLPR----AEVLEKALELARSLAEKPRHSLVLLKDHLV---ADRRR--------------------- 217 (249)
T ss_pred CHHHHHHcCCCeEEeCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---Hhhhc---------------------
Confidence 99999999999999995 779999999999999999999999999999 66554
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHH
Q psy503 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSF 322 (333)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~af 322 (333)
+++++++.|...+..++.++|++||+++.
T Consensus 218 -----------~l~~~~~~e~~~~~~~~~~~~~~egi~~~ 246 (249)
T PRK07110 218 -----------RLPEVIEQEVAMHEKTFHQPEVKRRIESL 246 (249)
T ss_pred -----------cHHHHHHHHHHHHHHHhCCHhHHHHHHHh
Confidence 78999999999999999999999999875
|
|
| >PRK05869 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=352.14 Aligned_cols=213 Identities=30% Similarity=0.485 Sum_probs=193.6
Q ss_pred ceEEEEee--ecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHH
Q psy503 35 TQIIYHNS--PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ 112 (333)
Q Consensus 35 ~~~~~~~~--~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~ 112 (333)
+++.++.. +.+++|++|+||||++ |++|.+|+.+|.++|++++.|+++++|||||. |++||+|.|++++.....+.
T Consensus 3 ~~~~~~~~~~~~~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~ 80 (222)
T PRK05869 3 EFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGG-HEIFSAGDDMPELRTLSAQE 80 (222)
T ss_pred cchhhhcccCcccCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCcCcCcCHHHHhccChhh
Confidence 34444443 3478999999999985 99999999999999999999999999999998 88999999999876543333
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHH
Q psy503 113 IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192 (333)
Q Consensus 113 ~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a 192 (333)
...+.+.+++++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++.+|++++|..++
T Consensus 81 ~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a 160 (222)
T PRK05869 81 ADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRA 160 (222)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHH
Confidence 33344556788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhc
Q psy503 193 KELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSID 253 (333)
Q Consensus 193 ~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~ 253 (333)
++++++|++++|+||+++||||+++|+ +++++++.+++++|+..+|.+++.+|+.++
T Consensus 161 ~~l~ltg~~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~ia~~~~~a~~~~K~~~~ 217 (222)
T PRK05869 161 KELVFSGRFFDAEEALALGLIDEMVAP----DDVYDAAAAWARRFLDGPPHALAAAKAGIS 217 (222)
T ss_pred HHHHHcCCCcCHHHHHHCCCCCEeeCc----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999995 789999999999999999999999999998
|
|
| >PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=375.94 Aligned_cols=243 Identities=22% Similarity=0.291 Sum_probs=216.5
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC----HHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN----EDQIRSFVSTL 120 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~----~~~~~~~~~~~ 120 (333)
+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|. |++||+|+|++++.... .+....++...
T Consensus 44 ~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~-GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~ 122 (401)
T PLN02157 44 SGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGS-GRAFCAGGDIVSLYHLRKRGSPDAIREFFSSL 122 (401)
T ss_pred ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECC-CCCccCCcCHHHHHhhccccchHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 78999999999875321 12223444455
Q ss_pred HHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 121 ~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
+.+...|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. .+++|++||+
T Consensus 123 ~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a~~L~LTG~ 201 (401)
T PLN02157 123 YSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR-LGEYLGLTGL 201 (401)
T ss_pred HHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-HHHHHHHcCC
Confidence 567788999999999999999999999999999999999999999999999999999999999999996 8999999999
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCC
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGG 280 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (333)
+++|+||+++||||++||+ +++ +++.+++++++..+|.++..+|+.++ ... .
T Consensus 202 ~i~A~eA~~~GLv~~vVp~----~~l-~~~~~~~~~i~~~~p~av~~~k~~~~---~~~-~------------------- 253 (401)
T PLN02157 202 KLSGAEMLACGLATHYIRS----EEI-PVMEEQLKKLLTDDPSVVESCLEKCA---EVA-H------------------- 253 (401)
T ss_pred cCCHHHHHHcCCceEEeCH----hHH-HHHHHHHHHHHcCCHHHHHHHHHHHh---ccc-C-------------------
Confidence 9999999999999999996 566 67889999999999999999999998 432 2
Q ss_pred CCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHH---hccCCCCC
Q psy503 281 ESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSF---LGKYKPVY 330 (333)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~af---lekr~p~~ 330 (333)
+....+..+...+..++.+++.+|++++| ++||.|.|
T Consensus 254 -------------~~~~~l~~~~~~i~~~f~~~d~~ei~~al~~~~~kr~~~w 293 (401)
T PLN02157 254 -------------PEKTGVIRRIDLLEKCFSHDTVEEIIDSLEIEAGRRKDTW 293 (401)
T ss_pred -------------CcchhHHHHHHHHHHHhcCCCHHHHHHHHHhhhcccchHH
Confidence 34456677788899999999999999999 88888887
|
|
| >KOG1681|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=338.36 Aligned_cols=264 Identities=25% Similarity=0.425 Sum_probs=242.9
Q ss_pred ccCccceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc-
Q psy503 30 EGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL- 108 (333)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~- 108 (333)
+...++...+.+...++-|..+.||||.|.|+++..|+.|+.++|+.++.||++++|||+|. |+.||+|+|+..+...
T Consensus 14 ~~~s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~-GKhFcaGIDl~~~~~~~ 92 (292)
T KOG1681|consen 14 PDHSYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGA-GKHFCAGIDLNDMASDR 92 (292)
T ss_pred CccccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecC-CcceecccCcchhhhhh
Confidence 34446666777778899999999999999999999999999999999999999999999999 9999999998765432
Q ss_pred ----C-------HHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCCh
Q psy503 109 ----N-------EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGA 177 (333)
Q Consensus 109 ----~-------~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~ 177 (333)
. ....+.++..+++.+..|.+||||+|++|+|+|+|+|+.|..+||+|+|++++.|+.-|+.+|+..+.
T Consensus 93 ~~~~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADv 172 (292)
T KOG1681|consen 93 ILQPEGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADV 172 (292)
T ss_pred ccccccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhch
Confidence 1 11245677788999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccC-HHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCC
Q psy503 178 GGTQRLPRIVG-IPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPG 256 (333)
Q Consensus 178 g~~~~L~r~iG-~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~ 256 (333)
|...+||+.+| ..+++++.+|++.|+|.||++.|||.+|+|+ .++++..++.+|+.|+.++|.+++.||..|.
T Consensus 173 GTL~RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~d---k~~ll~~~l~mA~~Ia~KSpvaVqgTK~~L~--- 246 (292)
T KOG1681|consen 173 GTLNRLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPD---KEELLNGALPMAELIASKSPVAVQGTKENLL--- 246 (292)
T ss_pred hhHhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCC---HHHHHhhhHHHHHHhccCCceeeechHHHHH---
Confidence 99999999999 8899999999999999999999999999998 7899999999999999999999999999999
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC-CCC
Q psy503 257 RGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPV-YKG 332 (333)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~-~~~ 332 (333)
.+.+. +.++.|..-..+....+.++|..+.+.+-++|+||. |..
T Consensus 247 ysreh--------------------------------sv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~~tfsk 291 (292)
T KOG1681|consen 247 YSREH--------------------------------SVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLKTVTFSK 291 (292)
T ss_pred HHhhh--------------------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccc
Confidence 88776 889999999999999999999999999999999887 753
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-47 Score=390.83 Aligned_cols=266 Identities=30% Similarity=0.456 Sum_probs=220.7
Q ss_pred EeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc---CHHHHHHH
Q psy503 40 HNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSF 116 (333)
Q Consensus 40 ~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~---~~~~~~~~ 116 (333)
.+...+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++... ..+....+
T Consensus 9 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 87 (715)
T PRK11730 9 QVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSA-KDAFIVGADITEFLSLFAAPEEELSQW 87 (715)
T ss_pred EEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECC-CCccccCcCHHHHhhhccCCHHHHHHH
Confidence 3333478999999999999999999999999999999999999999999998 7899999999987542 22233455
Q ss_pred HHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHH
Q psy503 117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELI 196 (333)
Q Consensus 117 ~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~ll 196 (333)
...++.++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|++|+
T Consensus 88 ~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~ll 167 (715)
T PRK11730 88 LHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWI 167 (715)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHHH
Confidence 56677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhc------------CHH---------HHHHHHHHhcCC
Q psy503 197 YTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHN------------GPI---------AVRMAKRSIDGP 255 (333)
Q Consensus 197 ltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~------------~~~---------a~~~~K~~l~~~ 255 (333)
++|++++|+||+++||||+|||+ +++++++.++|++|+.. +|. +++.+|+.++
T Consensus 168 ltG~~~~A~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~~~~~~~~~~~p~a~~~~~~~~~~~~~k~~~~-- 241 (715)
T PRK11730 168 AAGKDVRAEDALKVGAVDAVVAP----EKLQEAALALLKQAIAGKLDWKARRQPKLEPLKLSKIEAMMSFTTAKGMVA-- 241 (715)
T ss_pred HcCCcCCHHHHHHCCCCeEecCH----HHHHHHHHHHHHHHhhcCCccccccCcccccccccchhHHHHHHHHHHHHH--
Confidence 99999999999999999999995 78999999999999965 454 4577776542
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Q psy503 256 GRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYK 327 (333)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~ 327 (333)
+... .+.|.+ .............+++++++.|.+.+..++.++|++||+++|+++|.
T Consensus 242 -~~~~------~~~pa~--------~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~ 298 (715)
T PRK11730 242 -QKAG------KHYPAP--------MTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQY 298 (715)
T ss_pred -Hhhc------cCCccH--------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 1100 000100 00000000011127899999999999999999999999999999765
|
|
| >PRK08290 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-46 Score=347.47 Aligned_cols=229 Identities=26% Similarity=0.387 Sum_probs=200.5
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCH--------------
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-------------- 110 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~-------------- 110 (333)
+++|++||||||+++|++|.+|+.+|.+++++++.|+++++|||||. |++||+|.|++++.....
T Consensus 11 ~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (288)
T PRK08290 11 AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGA-GKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWD 89 (288)
T ss_pred eCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECC-CCccccCCCccccccccccccccccccccccc
Confidence 78999999999999999999999999999999999999999999998 899999999997632100
Q ss_pred -------H-HHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhh
Q psy503 111 -------D-QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQR 182 (333)
Q Consensus 111 -------~-~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~ 182 (333)
. ........+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |+ .+.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl-~~-~~~~~ 167 (288)
T PRK08290 90 GATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI-PG-VEYFA 167 (288)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc-Cc-chHHH
Confidence 0 01112234566778899999999999999999999999999999999999999999999998 44 34567
Q ss_pred cccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCccc
Q psy503 183 LPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYR 262 (333)
Q Consensus 183 L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~ 262 (333)
+++++|+.++++|++||+.|+|+||+++||||++||+ +++.+++.+++++|+..++.+++.+|+.++ +..+.
T Consensus 168 l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~~~---~~~~~- 239 (288)
T PRK08290 168 HPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPR----DELEAETLELARRIAAMPPFGLRLTKRAVN---QTLDA- 239 (288)
T ss_pred HHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHHhh-
Confidence 8999999999999999999999999999999999995 789999999999999999999999999998 65442
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHh-cCcc
Q psy503 263 DGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVI-RTQD 314 (333)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~-~~~d 314 (333)
.++++++..|.......+ ++++
T Consensus 240 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 262 (288)
T PRK08290 240 ------------------------------QGFRAALDAVFDLHQLGHAHNAE 262 (288)
T ss_pred ------------------------------ccHHHHHHHHHHHHHHccccchh
Confidence 158899999988888777 6664
|
|
| >PRK08788 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=343.38 Aligned_cols=256 Identities=24% Similarity=0.328 Sum_probs=208.6
Q ss_pred ccccccCccceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEeCCCCccccCC
Q psy503 26 SVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRG-----DEEVRCVLLRSLVKDVFCAGA 100 (333)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~-----d~~v~vvVl~g~~g~~F~~G~ 100 (333)
+++.. +++..+.+.++ .+++|++|+|| |+++|+||.+|+.+|.+++++++. |+++++|||+|.+|++||+|.
T Consensus 7 ~~~~~-~~~~~~~i~~e-~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~ 83 (287)
T PRK08788 7 PFPEA-GELSQLRVYYE-EERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGG 83 (287)
T ss_pred ccccc-cccCceEEEEE-ccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCc
Confidence 34443 34666666655 47899999996 989999999999999999999998 899999999998678999999
Q ss_pred Cchhhccc----CHHHHHHHHHHHHHHHHHHh---cCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCc
Q psy503 101 DLKHRLTL----NEDQIRSFVSTLRYMTCQLE---SIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAI 173 (333)
Q Consensus 101 Dl~~~~~~----~~~~~~~~~~~~~~l~~~l~---~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl 173 (333)
|++++... ..+....+...+.+.+.++. .+||||||+|||+|+|||++|+++||+||++++++|++||+++|+
T Consensus 84 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl 163 (287)
T PRK08788 84 DLALFAELIRAGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNL 163 (287)
T ss_pred CHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCc
Confidence 99987431 11111122222233333333 799999999999999999999999999999999999999999999
Q ss_pred cCChhhhhhcccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhc
Q psy503 174 IPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSID 253 (333)
Q Consensus 174 ~p~~g~~~~L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~ 253 (333)
+|++|++++|++++|+.++++++++|+.++|+||+++||||+++|+ +++.+++.+++++|+.. |.+...+|+..+
T Consensus 164 ~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~----~el~~~a~~~a~~ia~~-~~~~~a~k~~~~ 238 (287)
T PRK08788 164 FPGMGAYSFLARRVGPKLAEELILSGKLYTAEELHDMGLVDVLVED----GQGEAAVRTFIRKSKRK-LNGWRAMLRARR 238 (287)
T ss_pred CCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCc----hHHHHHHHHHHHHHhcC-ccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999996 67899999999999976 666666666665
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcC-ccHHHHHHHHhc
Q psy503 254 GPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRT-QDRVEGLKSFLG 324 (333)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~-~d~~egi~afle 324 (333)
..... ++++.++.|...+..+++. +..++-|..|..
T Consensus 239 ---~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (287)
T PRK08788 239 ---RVNPL--------------------------------SLEELMDITEIWVDAALQLEEKDLRTMERLVR 275 (287)
T ss_pred ---hhccC--------------------------------CHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 33333 6788888887777765544 556777777754
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=382.54 Aligned_cols=249 Identities=28% Similarity=0.520 Sum_probs=220.9
Q ss_pred EEeeecCCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC-HHHHHHH
Q psy503 39 YHNSPERPGIVELCMNRP-QARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN-EDQIRSF 116 (333)
Q Consensus 39 ~~~~~~~~~v~~Itln~p-~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~-~~~~~~~ 116 (333)
++++..+++|++|||||| ++.|++|.+|+.+|.+++++++.|+++++|||+|.++++||+|.|++++.... .+....+
T Consensus 7 ~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~ 86 (708)
T PRK11154 7 FTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEAL 86 (708)
T ss_pred EEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHH
Confidence 444545789999999999 68999999999999999999999999999999997668999999999875432 2223344
Q ss_pred HHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCC--eEEeccccccCccCChhhhhhcccccCHHHHHH
Q psy503 117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKE 194 (333)
Q Consensus 117 ~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~--a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~ 194 (333)
...++.++.+|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|++++|..+|++
T Consensus 87 ~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A~~ 166 (708)
T PRK11154 87 ARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALD 166 (708)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHHHH
Confidence 556677889999999999999999999999999999999999987 489999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHH-------------HhhcCHH------------------
Q psy503 195 LIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAED-------------IAHNGPI------------------ 243 (333)
Q Consensus 195 llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~-------------ia~~~~~------------------ 243 (333)
|+++|++++|+||+++||||+++|+ +++.+++.++|++ ++..+|.
T Consensus 167 llltG~~i~a~eA~~~GLv~~vv~~----~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 242 (708)
T PRK11154 167 MILTGKQLRAKQALKLGLVDDVVPH----SILLEVAVELAKKGKPARRPLPVRERLLEGNPLGRALLFKQARKKTLAKTQ 242 (708)
T ss_pred HHHhCCcCCHHHHHHCCCCcEecCh----HHHHHHHHHHHHhcCCccCcCCchhhhcccCchhHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999995 7789999999988 4566553
Q ss_pred ----HHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHH
Q psy503 244 ----AVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGL 319 (333)
Q Consensus 244 ----a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi 319 (333)
|++.+|++++ .+... ++++++..|.+.|..++.|+|+++++
T Consensus 243 g~~~A~~~~k~~i~---~~~~~--------------------------------~~~~~l~~E~~~~~~~~~s~~~~~~~ 287 (708)
T PRK11154 243 GNYPAPERILDVVR---TGLEK--------------------------------GMSSGYEAEARAFGELAMTPESAALR 287 (708)
T ss_pred cCChHHHHHHHHHH---HHhcC--------------------------------CHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6888888888 66555 79999999999999999999999999
Q ss_pred HHHhccC
Q psy503 320 KSFLGKY 326 (333)
Q Consensus 320 ~aflekr 326 (333)
++|+.++
T Consensus 288 ~aF~~~~ 294 (708)
T PRK11154 288 SIFFATT 294 (708)
T ss_pred HHHHHHH
Confidence 9998643
|
|
| >PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-45 Score=351.39 Aligned_cols=281 Identities=20% Similarity=0.252 Sum_probs=210.5
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc----CHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL----NEDQIRSFVSTL 120 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~----~~~~~~~~~~~~ 120 (333)
++++++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|. |++||+|+|++.+... ..+....++...
T Consensus 49 ~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~-GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~ 127 (407)
T PLN02851 49 RAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGS-GRAFCSGADVVSLYHLINEGNVEECKLFFENL 127 (407)
T ss_pred ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCccCCcCHHHHHhhccccchHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 7999999999987532 123345566777
Q ss_pred HHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 121 ~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
+.+...|..+|||+||+|||+|+|||+.|+++||+||++++++|++||+++|++|+.|++++|+|++|. .+.+|++||+
T Consensus 128 ~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~-~g~~L~LTG~ 206 (407)
T PLN02851 128 YKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY-LGEYLALTGQ 206 (407)
T ss_pred HHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH-HHHHHHHhCC
Confidence 888889999999999999999999999999999999999999999999999999999999999999998 5999999999
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHH------------------HhcCCCCCCccc
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKR------------------SIDGPGRGTQYR 262 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~------------------~l~~~~~~~~~~ 262 (333)
+++|+||+++||+|+++|+ +++ +.+.+.+.++...++.++..+-+ .|+.+.......
T Consensus 207 ~i~a~eA~~~GLa~~~v~~----~~l-~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~sv~ 281 (407)
T PLN02851 207 KLNGVEMIACGLATHYCLN----ARL-PLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHDTVE 281 (407)
T ss_pred cCCHHHHHHCCCceeecCH----hhH-HHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999996 333 44444444443333333322111 111000000000
Q ss_pred CC-C---CCCCCCCCCCCCC-------C--CCCCCcccc--cccccCHHHHHHHHHHHHHHHh---cCccHHHHHHHHhc
Q psy503 263 DG-Q---STHSPGRDGQGSK-------G--GESKGTENQ--NREFQGRYSGMEWEGICYDRVI---RTQDRVEGLKSFLG 324 (333)
Q Consensus 263 ~~-~---~~~~~~~~~~~~~-------~--~~~~~~~~~--~~~~~~~~~~l~~e~~~~~~~~---~~~d~~egi~afle 324 (333)
++ . ...+.....|... + ...+++..+ .+...++.+.+..|+.....++ .++||.|||+|.|-
T Consensus 282 ~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVRA~LI 361 (407)
T PLN02851 282 EIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVRARLV 361 (407)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHHHHhc
Confidence 00 0 0000000111111 0 022233222 1122389999999999998887 48999999999976
Q ss_pred --cCCCCCCC
Q psy503 325 --KYKPVYKG 332 (333)
Q Consensus 325 --kr~p~~~~ 332 (333)
.++|+|+.
T Consensus 362 DKd~~P~W~p 371 (407)
T PLN02851 362 DKDFAPKWDP 371 (407)
T ss_pred CCCCCCCCCC
Confidence 56899973
|
|
| >PRK06213 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=333.19 Aligned_cols=205 Identities=17% Similarity=0.259 Sum_probs=187.0
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|++|||||| +.|++|.+++.+|.++++.++ +++++|||+|. |++||+|.|++++... .+....+...+.+++
T Consensus 10 ~~~v~~itln~~-~~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~-g~~F~~G~Dl~~~~~~-~~~~~~~~~~~~~l~ 84 (229)
T PRK06213 10 EDGVATITLDDG-KVNALSPAMIDALNAALDQAE--DDRAVVVITGQ-PGIFSGGFDLKVMTSG-AQAAIALLTAGSTLA 84 (229)
T ss_pred cCCEEEEEeCCC-CCCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCC-CCceEcCcCHHHHhcc-hHhHHHHHHHHHHHH
Confidence 789999999998 579999999999999999998 45799999998 8999999999987643 233445566778889
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCC-eEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~-a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
.++..+||||||+|||+|+|||++|+++|||||++++ ++|++||+++|++|+.++..++++++|...+++++++|++++
T Consensus 85 ~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~lll~g~~~~ 164 (229)
T PRK06213 85 RRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQRAVINAEMFD 164 (229)
T ss_pred HHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHHHHHHcCcccC
Confidence 9999999999999999999999999999999999999 999999999999888888888999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcc
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQY 261 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~ 261 (333)
|+||+++||||+|+|+ +++.+++.+++++++..+|.+++.+|+.++ .....
T Consensus 165 a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~ 215 (229)
T PRK06213 165 PEEAVAAGFLDEVVPP----EQLLARAQAAARELAGLNMGAHAATKLKVR---AAALE 215 (229)
T ss_pred HHHHHHCCCceeccCh----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HHHHH
Confidence 9999999999999985 789999999999999999999999999999 65443
|
|
| >PRK08272 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-45 Score=344.56 Aligned_cols=212 Identities=25% Similarity=0.333 Sum_probs=185.7
Q ss_pred ceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCH----
Q psy503 35 TQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE---- 110 (333)
Q Consensus 35 ~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~---- 110 (333)
+.+.++. +++|++||||||+++|++|.+|+.+|.++|++++.|+++++|||+|. |++||+|.|++++.....
T Consensus 10 ~~v~~e~---~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~-G~~FcaG~Dl~~~~~~~~~~~~ 85 (302)
T PRK08272 10 KTMTYEV---TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGA-GKGFCAGYDLSAYAEGSSSGGG 85 (302)
T ss_pred CeEEEEe---ECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcC-CCCcccCcCHHHHhhccccccc
Confidence 3445443 68999999999999999999999999999999999999999999998 799999999998743211
Q ss_pred -------------------HH--HHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEecccc
Q psy503 111 -------------------DQ--IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVET 169 (333)
Q Consensus 111 -------------------~~--~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~ 169 (333)
.. ...++..+++++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~ 165 (302)
T PRK08272 86 GGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPT 165 (302)
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcch
Confidence 00 012345566788889999999999999999999999999999999999999999999
Q ss_pred ccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHH
Q psy503 170 KLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAK 249 (333)
Q Consensus 170 ~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K 249 (333)
++|.+|+. ..+++++|..+|++|+++|++|+|+||+++||||+++|+ +++.+++.++|++|+..+|.+++.+|
T Consensus 166 ~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~----~~l~~~a~~la~~ia~~~~~a~~~~K 238 (302)
T PRK08272 166 RVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPP----EELDERTERLVERIAAVPVNQLAMVK 238 (302)
T ss_pred hcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCH----HHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 98666653 256778999999999999999999999999999999995 88999999999999999999999999
Q ss_pred HHhcCCCCCCc
Q psy503 250 RSIDGPGRGTQ 260 (333)
Q Consensus 250 ~~l~~~~~~~~ 260 (333)
++++ +.++
T Consensus 239 ~~l~---~~~~ 246 (302)
T PRK08272 239 LAVN---SALL 246 (302)
T ss_pred HHHH---HHHH
Confidence 9998 6543
|
|
| >PLN02988 3-hydroxyisobutyryl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=349.47 Aligned_cols=278 Identities=22% Similarity=0.322 Sum_probs=221.9
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC----HHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN----EDQIRSFVSTL 120 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~----~~~~~~~~~~~ 120 (333)
+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|. |++||+|+|++++.... ......++...
T Consensus 16 ~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~-G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~ 94 (381)
T PLN02988 16 KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGH-GRAFCAGGDVAAVVRDIEQGNWRLGANFFSDE 94 (381)
T ss_pred ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECC-CCCcccCcCHHHHHhhhcccchhHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999 68999999999875211 11122333334
Q ss_pred HHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 121 ~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
+.+...+..+|||+||+|||+|+|||+.|+++||+||++++++|++||+++|++|+.|++++|+|++|. .+++|++||+
T Consensus 95 ~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-~~~~l~LTG~ 173 (381)
T PLN02988 95 YMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF-FGEYVGLTGA 173 (381)
T ss_pred HHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-HHHHHHHcCC
Confidence 456678899999999999999999999999999999999999999999999999999999999999997 6899999999
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccC--------------C-C
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRD--------------G-Q 265 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~--------------~-~ 265 (333)
+++|+||+++||||++||+ +++.+.+.+++ .++..+|.++..+|+.+. ......+ + .
T Consensus 174 ~i~a~eA~~~GLv~~vv~~----~~l~~~~~~la-~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~I~~~f~~~ 245 (381)
T PLN02988 174 RLDGAEMLACGLATHFVPS----TRLTALEADLC-RIGSNDPTFASTILDAYT---QHPRLKPQSAYHRLDVIDRCFSRR 245 (381)
T ss_pred CCCHHHHHHcCCceEecCH----hHHHHHHHHHH-HhhccCHHHHHHHHHHhh---cCCCCCCchHHHHHHHHHHHhCCC
Confidence 9999999999999999996 67888888887 777788888988888876 2211000 0 0
Q ss_pred -------C-CCCC--CCCCCCCC-------C--CCCCCcccc--cccccCHHHHHHHHHHHHHHHhc---CccHHHHHHH
Q psy503 266 -------S-THSP--GRDGQGSK-------G--GESKGTENQ--NREFQGRYSGMEWEGICYDRVIR---TQDRVEGLKS 321 (333)
Q Consensus 266 -------~-~~~~--~~~~~~~~-------~--~~~~~~~~~--~~~~~~~~~~l~~e~~~~~~~~~---~~d~~egi~a 321 (333)
+ ..+- ....|... + ...+++..+ .+...++.+.+..|+....+++. ++||.|||+|
T Consensus 246 ~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVRA 325 (381)
T PLN02988 246 TVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCRA 325 (381)
T ss_pred CHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHHH
Confidence 0 0000 01112111 0 122333322 22234899999999999999988 6999999999
Q ss_pred Hhc-c-CCCCCCC
Q psy503 322 FLG-K-YKPVYKG 332 (333)
Q Consensus 322 fle-k-r~p~~~~ 332 (333)
.|- | +.|+|+.
T Consensus 326 ~LiDKd~~P~W~p 338 (381)
T PLN02988 326 ILVDKDKNPKWEP 338 (381)
T ss_pred HhcCCCCCCCCCC
Confidence 976 3 6899974
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=374.45 Aligned_cols=244 Identities=28% Similarity=0.531 Sum_probs=212.7
Q ss_pred eecCCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc-CHHHHHHHHHH
Q psy503 42 SPERPGIVELCMNRP-QARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL-NEDQIRSFVST 119 (333)
Q Consensus 42 ~~~~~~v~~Itln~p-~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~-~~~~~~~~~~~ 119 (333)
...+++|++|||||| ++.|+||.+|+.+|.++|++++.|+++++|||++..+++||+|.|++++... .......+...
T Consensus 5 ~~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 84 (699)
T TIGR02440 5 TVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQ 84 (699)
T ss_pred EEcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHH
Confidence 345789999999999 6899999999999999999999999999999754338899999999987532 12233444556
Q ss_pred HHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCC--eEEeccccccCccCChhhhhhcccccCHHHHHHHHH
Q psy503 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIY 197 (333)
Q Consensus 120 ~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~--a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~lll 197 (333)
++.++..+.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+|++|..++++|++
T Consensus 85 ~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~lll 164 (699)
T TIGR02440 85 GQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMIL 164 (699)
T ss_pred HHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHH
Confidence 778889999999999999999999999999999999999986 799999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHH-------------HHhhcCHHHHH------------------
Q psy503 198 TGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAE-------------DIAHNGPIAVR------------------ 246 (333)
Q Consensus 198 tG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~-------------~ia~~~~~a~~------------------ 246 (333)
+|+.++|+||+++||||+++|+ +++++++.++|+ .++..+|.+.+
T Consensus 165 tG~~~~a~eA~~~GLV~~vv~~----~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~~~~ 240 (699)
T TIGR02440 165 TGKQLRAKQALKLGLVDDVVPQ----SILLDTAVEMALKGKPIRKPLSLQERLLEGTPLGRALLFDQAAKKTAKKTQGNY 240 (699)
T ss_pred cCCcCCHHHHHhCCCCcEecCh----hHHHHHHHHHHHhCCCCCCCccchhhhcccCchhHHHHHHHHHHHHHHhcccCC
Confidence 9999999999999999999995 778999999998 57777666644
Q ss_pred ----HHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHH
Q psy503 247 ----MAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSF 322 (333)
Q Consensus 247 ----~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~af 322 (333)
.+|++++ .+... +++++++.|.+.|..++.|+|+++++++|
T Consensus 241 ~a~~~~~~~i~---~~~~~--------------------------------~~~~~l~~E~~~~~~~~~s~~~~~~~~~f 285 (699)
T TIGR02440 241 PAAERILDVVR---QGLAQ--------------------------------GMQKGLDAEARAFGELVMTPESAALRSIF 285 (699)
T ss_pred hhHHHHHHHHH---HHhcC--------------------------------CHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3334444 33333 89999999999999999999999999999
Q ss_pred hc
Q psy503 323 LG 324 (333)
Q Consensus 323 le 324 (333)
+-
T Consensus 286 ~~ 287 (699)
T TIGR02440 286 FA 287 (699)
T ss_pred HH
Confidence 76
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=334.68 Aligned_cols=205 Identities=20% Similarity=0.328 Sum_probs=179.3
Q ss_pred CCCE--EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc---CHHHHHHHHHH
Q psy503 45 RPGI--VELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFVST 119 (333)
Q Consensus 45 ~~~v--~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~---~~~~~~~~~~~ 119 (333)
.+|+ ++|+||||+++|++|.+|+.+|.++++.++.|+++++|||||.++++||+|.|++++... .......+.+.
T Consensus 33 ~~~~~~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~ 112 (360)
T TIGR03200 33 VPGLYNAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRL 112 (360)
T ss_pred cCceEEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHH
Confidence 3454 459999999999999999999999999999999999999999944799999999987542 22233445566
Q ss_pred HHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcC
Q psy503 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTG 199 (333)
Q Consensus 120 ~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG 199 (333)
+++++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++++++|
T Consensus 113 ~~~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltG 192 (360)
T TIGR03200 113 FNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLC 192 (360)
T ss_pred HHHHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhC
Confidence 67888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHcCCcceecCCCCChhHH------------HHHHHHHHHHHhhcCHH--HHHHHHHHhc
Q psy503 200 RLVDSTEAKSIGLVNTLTPQNPNQNAA------------YLASLRIAEDIAHNGPI--AVRMAKRSID 253 (333)
Q Consensus 200 ~~isa~eAl~~Glv~~vv~~~~~~~~l------------~~~a~~~a~~ia~~~~~--a~~~~K~~l~ 253 (333)
++++|+||+++||||+|+|+ .++ ++.+.++++.+...++. ++...|.+++
T Consensus 193 e~~sA~EA~~~GLVd~VVp~----~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 256 (360)
T TIGR03200 193 EPWSAHKAKRLGIIMDVVPA----LKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIK 256 (360)
T ss_pred CcCcHHHHHHcCChheecCc----hhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHh
Confidence 99999999999999999997 344 45555667777766665 7777787777
|
Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PLN02267 enoyl-CoA hydratase/isomerase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-43 Score=318.82 Aligned_cols=205 Identities=20% Similarity=0.310 Sum_probs=179.3
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEeCCCCccccCCCchhhccc--CHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVR-CVLLRSLVKDVFCAGADLKHRLTL--NEDQIRSFVSTL 120 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~-vvVl~g~~g~~F~~G~Dl~~~~~~--~~~~~~~~~~~~ 120 (333)
.+++|++|+||||++ |++|.+|+.+|.+++++++.|++++ +||++|. |++||+|.|++++... ..+....+...+
T Consensus 6 ~~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~ 83 (239)
T PLN02267 6 KRGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAE-GKFFSNGFDLAWAQAAGSAPSRLHLMVAKL 83 (239)
T ss_pred ecCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCC-CCceeCCcCHHHHhccccCHHHHHHHHHHH
Confidence 378999999999985 9999999999999999999998875 7777887 8899999999986532 122223345567
Q ss_pred HHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEe-CCeEEeccccccCccCChhhhhhcccccCHHHH-HHHHHc
Q psy503 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA-SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA-KELIYT 198 (333)
Q Consensus 121 ~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias-~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a-~~lllt 198 (333)
++++..+.++||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++++.++..+|++++|..++ ++++++
T Consensus 84 ~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~lllt 163 (239)
T PLN02267 84 RPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVLLR 163 (239)
T ss_pred HHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHHHHHHc
Confidence 788899999999999999999999999999999999998 568999999999997444457799999999999 699999
Q ss_pred CCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhc--CHHHHHHHHHHhc
Q psy503 199 GRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHN--GPIAVRMAKRSID 253 (333)
Q Consensus 199 G~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~--~~~a~~~~K~~l~ 253 (333)
|++|+|+||+++||||+++|+ .+++.+++.++|++|+.. ++.++..+|+.++
T Consensus 164 G~~~~a~eA~~~Glv~~vv~~---~~~l~~~a~~~A~~ia~~~~~~~~~~~~k~~~~ 217 (239)
T PLN02267 164 AAKLTAEEAVEMGIVDSAHDS---AEETVEAAVRLGEELAARKWNGEVYASIRKSLL 217 (239)
T ss_pred CCcCCHHHHHHCCCcceecCC---HHHHHHHHHHHHHHHhhccCcccHHHHHHHHHH
Confidence 999999999999999999985 467999999999999987 5578899999988
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-43 Score=360.88 Aligned_cols=267 Identities=28% Similarity=0.415 Sum_probs=215.0
Q ss_pred EEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc---CHHHHHH
Q psy503 39 YHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRS 115 (333)
Q Consensus 39 ~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~---~~~~~~~ 115 (333)
+.+...+++|++|+||||++.|+||.+|+.+|.++|++++.|+++++|||+|. +++||+|.|++++... ..+....
T Consensus 8 i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~ 86 (714)
T TIGR02437 8 IQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSG-KDAFIVGADITEFLGLFALPDAELIQ 86 (714)
T ss_pred EEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCccccCcCHHHHhhcccCCHHHHHH
Confidence 34444578999999999999999999999999999999999999999999998 7899999999987542 2233344
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHH
Q psy503 116 FVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKEL 195 (333)
Q Consensus 116 ~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~l 195 (333)
+.+..++++.+|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++|
T Consensus 87 ~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~l 166 (714)
T TIGR02437 87 WLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEW 166 (714)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHHH
Confidence 55667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHH----------H-----------HHHHHHHhcC
Q psy503 196 IYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPI----------A-----------VRMAKRSIDG 254 (333)
Q Consensus 196 lltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~----------a-----------~~~~K~~l~~ 254 (333)
+++|++++|+||+++||||+++|+ +++.+++.++++++....+. . ...+++.+.
T Consensus 167 lltG~~~~A~eA~~~GLvd~vv~~----~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 241 (714)
T TIGR02437 167 IASGKENRAEDALKVGAVDAVVTA----DKLGAAALQLLKDAINGKLDWKAKRQPKLEPLKLSKIEAMMSFTTAKGMVA- 241 (714)
T ss_pred HHcCCcCCHHHHHHCCCCcEeeCh----hHHHHHHHHHHHHHhhcCCcccccCCCCcccccccchHHHHHHHHHHHHHH-
Confidence 999999999999999999999995 77899999999775432100 0 111111011
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Q psy503 255 PGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYK 327 (333)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~ 327 (333)
+. ....+++....+..+..+...++++++..|.+.|.+++.|++.++.+..|+.+|.
T Consensus 242 --~~--------------~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~ 298 (714)
T TIGR02437 242 --QV--------------AGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQY 298 (714)
T ss_pred --Hh--------------hcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHh
Confidence 00 0111122211111122222237899999999999999999999999999987544
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=306.85 Aligned_cols=256 Identities=30% Similarity=0.465 Sum_probs=212.8
Q ss_pred ccceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC--CCCccccCCCchhhcccC-
Q psy503 33 KLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSL--VKDVFCAGADLKHRLTLN- 109 (333)
Q Consensus 33 ~~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~--~g~~F~~G~Dl~~~~~~~- 109 (333)
+|+-|.|+- .-++|+.|++|||+++|++.+..+.||.++|..+..|+++.+|||||. |+.+||+|.|-+......
T Consensus 16 ~y~dI~Y~~--~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~g 93 (282)
T COG0447 16 GYEDITYEK--SVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGG 93 (282)
T ss_pred CcceeEEee--ccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCC
Confidence 355555553 357999999999999999999999999999999999999999999974 789999999987543311
Q ss_pred --HHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhccccc
Q psy503 110 --EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIV 187 (333)
Q Consensus 110 --~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~i 187 (333)
.+..... -...++-+.|+.+||||||.|+|.++|||-.|-+.||+.||+++++|+....++|-+-++.++..|.|.+
T Consensus 94 Y~~d~~~~r-LnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~V 172 (282)
T COG0447 94 YVDDDGIPR-LNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIV 172 (282)
T ss_pred ccCCccCcc-cchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHh
Confidence 0110000 1223455678899999999999999999999999999999999999999999999998888888999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCC
Q psy503 188 GIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQST 267 (333)
Q Consensus 188 G~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~ 267 (333)
|.++|+++.+.++.++|+||+++|+||.||| .++|.+++.+|+++|..+||.|++..|.+++ ...+
T Consensus 173 GqKkArEIwfLcR~Y~A~eal~MGlVN~Vvp----~~~LE~e~v~W~~E~l~kSP~AlR~LK~Afn---ad~D------- 238 (282)
T COG0447 173 GQKKAREIWFLCRQYDAEEALDMGLVNTVVP----HADLEKETVQWAREMLAKSPTALRMLKAAFN---ADCD------- 238 (282)
T ss_pred hhhhhHHhhhhhhhccHHHHHhcCceeeecc----HHHHHHHHHHHHHHHHhcChHHHHHHHHHhc---CCCc-------
Confidence 9999999999999999999999999999999 4889999999999999999999999999998 3322
Q ss_pred CCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCC
Q psy503 268 HSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYK 331 (333)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~ 331 (333)
.+.-.-++......-...+++.+||..||+|||+|.|.
T Consensus 239 --------------------------GlaG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pdf~ 276 (282)
T COG0447 239 --------------------------GLAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPDFS 276 (282)
T ss_pred --------------------------hhhHHHHhcccceEEEEechhhhhhHHHHhhccCCChH
Confidence 11111111122222345899999999999999999985
|
|
| >KOG0016|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=301.36 Aligned_cols=245 Identities=23% Similarity=0.310 Sum_probs=223.8
Q ss_pred eecCCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHH-------HH
Q psy503 42 SPERPGIVELCMN-RPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNED-------QI 113 (333)
Q Consensus 42 ~~~~~~v~~Itln-~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~-------~~ 113 (333)
...++++..|.+| ||++.|+++.+++.++.++|..+..|+++..+|++|. |++||+|.|+..+.....+ ..
T Consensus 11 v~~~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~-G~~f~sG~Df~~~~~~~~~d~~~~~~~~ 89 (266)
T KOG0016|consen 11 VTRENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSN-GSYFCSGLDFSPFAKALDDDANEESDKA 89 (266)
T ss_pred EEecCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecC-ccEEeeccccchhhhcCCCcccccchhh
Confidence 3458999999999 9999999999999999999999999999999999998 9999999999887643221 12
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHH
Q psy503 114 RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAK 193 (333)
Q Consensus 114 ~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~ 193 (333)
..+...+..+...+.++|||+||.|||+|+|.|+.+.-.||+++|+|+++|..|++++|.+|++++++.||+++|...|.
T Consensus 90 ~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A~ 169 (266)
T KOG0016|consen 90 SKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMGSASAN 169 (266)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhhchhhHH
Confidence 23334455688899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCC
Q psy503 194 ELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRD 273 (333)
Q Consensus 194 ~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~ 273 (333)
+|++.|++++|+||.+.|||++|++. +++.++++.-+++++..+|.+++..|++++ .....
T Consensus 170 E~ll~~~kltA~Ea~~~glVskif~~----~tf~~~v~~~ikq~s~l~p~sl~~~K~L~r---s~~k~------------ 230 (266)
T KOG0016|consen 170 EMLLFGEKLTAQEACEKGLVSKIFPA----ETFNEEVLKKIKQYSKLSPESLLGMKKLLR---SNIKE------------ 230 (266)
T ss_pred HHHHhCCcccHHHHHhcCchhhhcCh----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HHHHH------------
Confidence 99999999999999999999999996 889999999999999999999999999999 65554
Q ss_pred CCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccC
Q psy503 274 GQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKY 326 (333)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr 326 (333)
.+..+.+.|.......|.++|+.+++..|+.|.
T Consensus 231 --------------------~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~ 263 (266)
T KOG0016|consen 231 --------------------ELIKANEEECNVLLKQWVSAECLARFKQYLSKK 263 (266)
T ss_pred --------------------HHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence 789999999999999999999999999998864
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=346.44 Aligned_cols=263 Identities=25% Similarity=0.417 Sum_probs=206.4
Q ss_pred CCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEE-EEEeCCCCccccCCCchhhccc-CHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCV-LLRSLVKDVFCAGADLKHRLTL-NEDQIRSFVSTLR 121 (333)
Q Consensus 45 ~~~v~~Itln~p~-~~Nalt~~~~~eL~~~l~~~~~d~~v~vv-Vl~g~~g~~F~~G~Dl~~~~~~-~~~~~~~~~~~~~ 121 (333)
+++|++||||||+ +.|+||.+++.+|.++|+.++.|+++++| |++|. |++||+|.|++++... ..+....+...++
T Consensus 20 ~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 98 (737)
T TIGR02441 20 KGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGK-PGSFVAGADIQMIAACKTAQEVTQLSQEGQ 98 (737)
T ss_pred ECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECC-CCcceeCcCHHHHhccCChHHHHHHHHHHH
Confidence 7899999999998 68999999999999999999999999965 56887 8899999999998632 2233445556678
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCC--eEEeccccccCccCChhhhhhcccccCHHHHHHHHHcC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTG 199 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~--a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG 199 (333)
+++.++.++||||||+|||+|+|||++|+|+||||||+++ ++|++||+++|++|++|++++|+|++|..+|++++++|
T Consensus 99 ~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~~A~~l~ltG 178 (737)
T TIGR02441 99 EMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTG 178 (737)
T ss_pred HHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCHHHHHHHHHcC
Confidence 8999999999999999999999999999999999999987 58999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHcCCcceecCC-CCC--------hhHHHHHHHHHHHHHhhcCHH------------------------HHH
Q psy503 200 RLVDSTEAKSIGLVNTLTPQ-NPN--------QNAAYLASLRIAEDIAHNGPI------------------------AVR 246 (333)
Q Consensus 200 ~~isa~eAl~~Glv~~vv~~-~~~--------~~~l~~~a~~~a~~ia~~~~~------------------------a~~ 246 (333)
++++|+||+++||||+|+|+ ++. .+++.+.|.+++..++...+. ...
T Consensus 179 ~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (737)
T TIGR02441 179 KKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVMTNPFVRQQVYK 258 (737)
T ss_pred CcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCccchhhcccchhHHHHHH
Confidence 99999999999999999985 110 144666677777665432100 011
Q ss_pred HHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcc
Q psy503 247 MAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGK 325 (333)
Q Consensus 247 ~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflek 325 (333)
.+++.+. + ++++ .+++....+..+..+...++++++..|.+.|.+++.|++.+.-+..|+-.
T Consensus 259 ~~~~~~~---~-------~~~g-------~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~ 320 (737)
T TIGR02441 259 TAEDKVM---K-------QTKG-------LYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQ 320 (737)
T ss_pred HHHHHHH---H-------hccC-------CCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1111111 0 0111 02222222222222333479999999999999999999999999998653
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >KOG1682|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=288.41 Aligned_cols=248 Identities=22% Similarity=0.336 Sum_probs=228.9
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC-HHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN-EDQIRSFVSTLRY 122 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~-~~~~~~~~~~~~~ 122 (333)
.+++|-.|+||+|+|+|.++..|+.+|.+.|.....+.++|+|||+.. |+.||+|.||+++.+.+ .+...+.+..+.+
T Consensus 38 ~~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~-GkifSaGH~LKELt~e~g~d~haevFqtc~d 116 (287)
T KOG1682|consen 38 EHNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQ-GKIFSAGHNLKELTNEPGSDIHAEVFQTCTD 116 (287)
T ss_pred cccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecC-CccccccccHHHhhcCccchHHHHHHHHHHH
Confidence 468999999999999999999999999999999998999999999999 99999999999997654 2334566778889
Q ss_pred HHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCC
Q psy503 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV 202 (333)
Q Consensus 123 l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~i 202 (333)
++.-|+++|.|+|+-|||.|..+|++|..+||++||+++++|..|..++|++....+. .|.|.+++..+.+|++||+++
T Consensus 117 vmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGv-AlaRavpRkva~~ML~Tg~Pi 195 (287)
T KOG1682|consen 117 VMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGV-ALARAVPRKVAAYMLMTGLPI 195 (287)
T ss_pred HHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcch-hHhhhcchhHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999998766554 578999999999999999999
Q ss_pred CHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCC
Q psy503 203 DSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGES 282 (333)
Q Consensus 203 sa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (333)
+++||+..|||+++||. +|+..++.++++.|...++..+..-|...+ .+..+
T Consensus 196 ~~eeAl~sGlvskvVp~----~el~~e~~~i~~~i~~~srav~slgk~f~y---~q~~m--------------------- 247 (287)
T KOG1682|consen 196 TGEEALISGLVSKVVPA----EELDKEIEEITNAIKAKSRAVISLGKEFYY---KQLAM--------------------- 247 (287)
T ss_pred chHHHHHhhhhhhcCCH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHH---------------------
Confidence 99999999999999995 889999999999999999999999999998 77766
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
+-.+++....+.+...++-.|++|||.+|++||.|+|+-
T Consensus 248 -----------s~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~~~h 286 (287)
T KOG1682|consen 248 -----------SQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPNWKH 286 (287)
T ss_pred -----------hHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCCcCC
Confidence 778889999999999999999999999999999999973
|
|
| >cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-40 Score=288.56 Aligned_cols=188 Identities=43% Similarity=0.770 Sum_probs=176.7
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHH--HHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ--IRSFVSTLR 121 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~--~~~~~~~~~ 121 (333)
.+++|++|+||+|++.|++|.+++.+|.++++.++.|+++++|||+|. ++.||+|.|++++.....+. ...+.+.++
T Consensus 5 ~~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~-~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T cd06558 5 RDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGA-GKAFCAGADLKELAALSDAGEEARAFIRELQ 83 (195)
T ss_pred EECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCceEeCcCHHHHhcccccchhHHHHHHHHH
Confidence 367999999999999999999999999999999999999999999998 99999999999987655433 567788899
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRL 201 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~ 201 (333)
+++.++..++||||++|||+|+|+|++++++||+||++++++|++||+++|++|+.|++++|++++|..++.+++++|+.
T Consensus 84 ~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~g~~ 163 (195)
T cd06558 84 ELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRR 163 (195)
T ss_pred HHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHH
Q psy503 202 VDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAED 236 (333)
Q Consensus 202 isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ 236 (333)
++++||+++||||+++++ +++.+++.+++++
T Consensus 164 ~~a~ea~~~Glv~~~~~~----~~l~~~a~~~a~~ 194 (195)
T cd06558 164 ISAEEALELGLVDEVVPD----EELLAAALELARR 194 (195)
T ss_pred cCHHHHHHcCCCCeecCh----hHHHHHHHHHHhh
Confidence 999999999999999996 7788888888865
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. |
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=324.55 Aligned_cols=208 Identities=25% Similarity=0.294 Sum_probs=176.9
Q ss_pred ccccCccceEEEEeeecCCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEeCCCCcc
Q psy503 28 SKEGRKLTQIIYHNSPERPGIVELCMNRPQ----------ARNALNATLVEEILTAVEAIR-GDEEVRCVLLRSLVKDVF 96 (333)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~v~~Itln~p~----------~~Nalt~~~~~eL~~~l~~~~-~d~~v~vvVl~g~~g~~F 96 (333)
+++.+.++.+.++. +++|++||||||+ ++|++|.+|+.+|.++|++++ .|+++++|||||.++++|
T Consensus 4 ~~~~~~~~~v~~~~---~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~F 80 (546)
T TIGR03222 4 RTEPSQYRHWKLTF---DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVF 80 (546)
T ss_pred cCCCCCCceEEEEe---eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCC
Confidence 44444555555553 6899999999975 899999999999999999999 789999999999767899
Q ss_pred ccCCCchhhcccCHHHHH---HHH-HHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCC--eEEeccccc
Q psy503 97 CAGADLKHRLTLNEDQIR---SFV-STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--VRMGLVETK 170 (333)
Q Consensus 97 ~~G~Dl~~~~~~~~~~~~---~~~-~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~--a~f~~pe~~ 170 (333)
|+|.|++++.....+... .+. .....+...+..+||||||+|||+|+|||++|+++||+||++++ ++|++||++
T Consensus 81 caG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~ 160 (546)
T TIGR03222 81 CSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVP 160 (546)
T ss_pred cCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchh
Confidence 999999987532111111 111 11234555677899999999999999999999999999999986 799999997
Q ss_pred -cCccCChhhhhhcc--cccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCH
Q psy503 171 -LAIIPGAGGTQRLP--RIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGP 242 (333)
Q Consensus 171 -~Gl~p~~g~~~~L~--r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~ 242 (333)
+|++|++|++.+++ +++|..+|++|+++|++|+|+||+++||||+|||+ +++.+++.++|++|+..+|
T Consensus 161 ~lGl~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~----~~l~~~a~~lA~~la~~~p 231 (546)
T TIGR03222 161 LLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKP----SQFDAAIAERAAELAAQSD 231 (546)
T ss_pred ccCcCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeCh----HHHHHHHHHHHHHHHhCCC
Confidence 99999999998887 68999999999999999999999999999999995 7899999999999998876
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=318.36 Aligned_cols=205 Identities=24% Similarity=0.292 Sum_probs=174.3
Q ss_pred CccceEEEEeeecCCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEeCCCCccccCC
Q psy503 32 RKLTQIIYHNSPERPGIVELCMNRPQ----------ARNALNATLVEEILTAVEAIR-GDEEVRCVLLRSLVKDVFCAGA 100 (333)
Q Consensus 32 ~~~~~~~~~~~~~~~~v~~Itln~p~----------~~Nalt~~~~~eL~~~l~~~~-~d~~v~vvVl~g~~g~~F~~G~ 100 (333)
.+++.+.++. +++|++||||||+ +.|++|.+|+.+|.+++++++ .|+++++|||+|.++++||+|.
T Consensus 12 ~~~~~~~~e~---~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~ 88 (550)
T PRK08184 12 SQYRHWKLSF---DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGA 88 (550)
T ss_pred CCCceEEEEe---eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCcc
Confidence 3455566554 6899999999653 899999999999999999999 7899999999998668999999
Q ss_pred CchhhcccCHHHHH---HHHH-HHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCC--eEEeccccc-cCc
Q psy503 101 DLKHRLTLNEDQIR---SFVS-TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--VRMGLVETK-LAI 173 (333)
Q Consensus 101 Dl~~~~~~~~~~~~---~~~~-~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~--a~f~~pe~~-~Gl 173 (333)
|++.+.....+... .... ....+...+..+||||||+|||+|+|||++|+++|||||++++ ++|++||++ +|+
T Consensus 89 DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl 168 (550)
T PRK08184 89 NIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGV 168 (550)
T ss_pred CHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhcccc
Confidence 99987542211111 1111 1223455677899999999999999999999999999999987 899999997 999
Q ss_pred cCChhhhhhcc--cccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHH
Q psy503 174 IPGAGGTQRLP--RIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPI 243 (333)
Q Consensus 174 ~p~~g~~~~L~--r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~ 243 (333)
+|++|++++|+ +++|..++++++++|+.++|+||+++||||++||+ +++.+++.++|++|+.++|.
T Consensus 169 ~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~----d~l~~~a~~~A~~ia~~~~~ 236 (550)
T PRK08184 169 LPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKP----SKFDAKVAERAAELAAASDR 236 (550)
T ss_pred CCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCH----HHHHHHHHHHHHHHHhCCCC
Confidence 99999998898 77999999999999999999999999999999995 78999999999999988764
|
|
| >KOG1684|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=282.38 Aligned_cols=253 Identities=23% Similarity=0.342 Sum_probs=212.5
Q ss_pred eecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcc----cCHHHHHHHH
Q psy503 42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLT----LNEDQIRSFV 117 (333)
Q Consensus 42 ~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~----~~~~~~~~~~ 117 (333)
.+.++...+||||||+..|++|.+|+..+.-.|..++.++.+++||+.|.++++||+|+|++.... ...+....++
T Consensus 42 ~e~~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF 121 (401)
T KOG1684|consen 42 VEGKGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFF 121 (401)
T ss_pred EecCCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHHH
Confidence 445889999999999999999999999999999999999999999999999999999999976542 2334577888
Q ss_pred HHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHH
Q psy503 118 STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIY 197 (333)
Q Consensus 118 ~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~lll 197 (333)
+..+.+...|.++.||.||.++|..+|||+.|..+--||||+|++.|.+||+.+|++|+.|++++|+|+.| ..+.++.|
T Consensus 122 ~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~lg~YLgL 200 (401)
T KOG1684|consen 122 TEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YLGLYLGL 200 (401)
T ss_pred HHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888 69999999
Q ss_pred cCCCCCHHHHHHcCCcceecCCCCChhHHHHHHH----------------------------------------------
Q psy503 198 TGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASL---------------------------------------------- 231 (333)
Q Consensus 198 tG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~---------------------------------------------- 231 (333)
||+++++.||+..||.++.|++...+ .+++.+
T Consensus 201 TG~rl~GaD~~~~GlATHyv~S~~l~--~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs~~tV 278 (401)
T KOG1684|consen 201 TGQRLSGADALRCGLATHYVPSEKLP--SLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFSANTV 278 (401)
T ss_pred ccceecchHHHHhcchhhccchhhhh--HHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhccccH
Confidence 99999999999999999999974322 122221
Q ss_pred -----------------HHH----HHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccc
Q psy503 232 -----------------RIA----EDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNR 290 (333)
Q Consensus 232 -----------------~~a----~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (333)
+|| +.|-+.+|.++..|-+.++ .+
T Consensus 279 eeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~---eg-------------------------------- 323 (401)
T KOG1684|consen 279 EEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIR---EG-------------------------------- 323 (401)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHH---hh--------------------------------
Confidence 111 1122233333433333333 22
Q ss_pred cccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhc--cCCCCCCC
Q psy503 291 EFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLG--KYKPVYKG 332 (333)
Q Consensus 291 ~~~~~~~~l~~e~~~~~~~~~~~d~~egi~afle--kr~p~~~~ 332 (333)
..+++++.+-.|++.-.+.+.+.||.||++|-|- +++|+|+.
T Consensus 324 s~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA~LIDKd~~PKW~p 367 (401)
T KOG1684|consen 324 SKQTLDQCLTMEYRLSLRMLMRGDFCEGVRAVLIDKDQNPKWDP 367 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccchhhhhhheeecCCcCCCCCC
Confidence 2248999999999999999999999999999875 67799974
|
|
| >cd07014 S49_SppA Signal peptide peptidase A | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-19 Score=158.47 Aligned_cols=138 Identities=18% Similarity=0.192 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhH
Q psy503 65 TLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYG 144 (333)
Q Consensus 65 ~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~G 144 (333)
-.+.+|.++|+++++|+++++|||++ +|.|.|+... ..+.+++..+..++|||||+|+|.|.|
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~-----~~~gg~~~~~------------~~~~~~i~~~~~~~kpVia~v~G~a~g 84 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV-----NSPGGSVTAS------------EVIRAELAAARAAGKPVVASGGGNAAS 84 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe-----eCCCcCHHHH------------HHHHHHHHHHHhCCCCEEEEECCchhH
Confidence 35789999999999999999999997 5778877642 234556777888999999999999999
Q ss_pred hhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhh--------hcccccC--HHHHHHHHHcCCCCCHHHHHHcCCcc
Q psy503 145 GGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQ--------RLPRIVG--IPLAKELIYTGRLVDSTEAKSIGLVN 214 (333)
Q Consensus 145 gG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~--------~L~r~iG--~~~a~~llltG~~isa~eAl~~Glv~ 214 (333)
+|+.|+++||+++++++++|+++.+..+..+...... .+++..| .....+++..|..++|++|++.||||
T Consensus 85 ~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD 164 (177)
T cd07014 85 GGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVD 164 (177)
T ss_pred HHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcc
Confidence 9999999999999999999999887766433222222 3333344 88889999999999999999999999
Q ss_pred eecCC
Q psy503 215 TLTPQ 219 (333)
Q Consensus 215 ~vv~~ 219 (333)
++.+.
T Consensus 165 ~v~~~ 169 (177)
T cd07014 165 SLGSF 169 (177)
T ss_pred cCCCH
Confidence 99984
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p |
| >cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-19 Score=157.74 Aligned_cols=145 Identities=17% Similarity=0.223 Sum_probs=114.6
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHh
Q psy503 49 VELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLE 128 (333)
Q Consensus 49 ~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~ 128 (333)
++|+|+.+ ++..+...+.+.|+.++.++ ++.|+|.=..+ |+++.. ...++..|.
T Consensus 2 ~vv~i~g~-----I~~~~~~~l~~~l~~a~~~~-~~~vvl~InSp-----GG~v~~---------------~~~i~~~l~ 55 (187)
T cd07020 2 YVLEINGA-----ITPATADYLERAIDQAEEGG-ADALIIELDTP-----GGLLDS---------------TREIVQAIL 55 (187)
T ss_pred EEEEEeeE-----EChHHHHHHHHHHHHHHhCC-CCEEEEEEECC-----CCCHHH---------------HHHHHHHHH
Confidence 56667633 66777889999999998665 67777763212 233221 124455667
Q ss_pred cCCCcEEEEec---hhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCCh--------------hhhhhcccccCH--
Q psy503 129 SIPVPVLAVLD---GSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGA--------------GGTQRLPRIVGI-- 189 (333)
Q Consensus 129 ~~~kP~Iaav~---G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~--------------g~~~~L~r~iG~-- 189 (333)
.+|||||++|+ |+|.|+|+.|+++||+++++++++|+.+++..+..+.. +....+++..|.
T Consensus 56 ~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~ 135 (187)
T cd07020 56 ASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNA 135 (187)
T ss_pred hCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 89999999999 99999999999999999999999999999985544432 234578888887
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCC
Q psy503 190 PLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 190 ~~a~~llltG~~isa~eAl~~Glv~~vv~~ 219 (333)
.++.+++++|+.|+++||+++||||+++++
T Consensus 136 ~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~ 165 (187)
T cd07020 136 EWAEKAVRESLSLTAEEALKLGVIDLIAAD 165 (187)
T ss_pred HHHHHHHHcCCeecHHHHHHcCCcccccCC
Confidence 689999999999999999999999999996
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c |
| >cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=142.94 Aligned_cols=151 Identities=20% Similarity=0.240 Sum_probs=110.0
Q ss_pred CEEEEEEcCC--CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 47 GIVELCMNRP--QARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 47 ~v~~Itln~p--~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+|++|.++-| ++.+..+...+.+|.++|+.+..||++++|||+ .||.|.|+.... .+.+.+
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~-----~~s~Gg~~~~~~------------~~~~~l 63 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR-----VNSPGGSVTASE------------VIRAEL 63 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE-----EcCCCcCHHHHH------------HHHHHH
Confidence 3556666544 122333445689999999999999999999998 589999997641 234556
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCcc----------CChhhhhhcccccC------
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAII----------PGAGGTQRLPRIVG------ 188 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~----------p~~g~~~~L~r~iG------ 188 (333)
..+..++||+|++++|.|.|+|+.|+++||++++++++.|+. +|+. +..|..+.+.+..|
T Consensus 64 ~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gs----iGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~ 139 (211)
T cd07019 64 AAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGS----IGIFGVITTVENSLDSIGVHTDGVSTSPLADVSI 139 (211)
T ss_pred HHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEE----eEEEEEcCCHHHHHHhcCCceEEEEecCcccCCC
Confidence 778889999999999999999999999999999999988873 3332 22222222222111
Q ss_pred ---------------------------------HHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q psy503 189 ---------------------------------IPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218 (333)
Q Consensus 189 ---------------------------------~~~a~~llltG~~isa~eAl~~Glv~~vv~ 218 (333)
.....+-+..|..+++++|++.||||+|-.
T Consensus 140 ~~~~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~~l~~~~~~~~~~~~~A~~~GLvD~i~~ 202 (211)
T cd07019 140 TRALPPEAQLGLQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGD 202 (211)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHhcCCcEEeHHHHHHcCCcccCCC
Confidence 112233456788999999999999999987
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te |
| >TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-15 Score=152.79 Aligned_cols=176 Identities=22% Similarity=0.281 Sum_probs=133.3
Q ss_pred cCCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC--CccccCCCchhhcccCHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQ--ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVK--DVFCAGADLKHRLTLNEDQIRSFVST 119 (333)
Q Consensus 44 ~~~~v~~Itln~p~--~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g--~~F~~G~Dl~~~~~~~~~~~~~~~~~ 119 (333)
.+++|++|+++.+= ..+.......+.+.+.|+.+..|+++++|||+-.++ ..|++ +.
T Consensus 306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as-------------------e~ 366 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS-------------------EI 366 (584)
T ss_pred CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH-------------------HH
Confidence 36889999999763 234444445677889999999999999999997522 22321 22
Q ss_pred HHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEE------eccc------cccCccCChhhhhhccc--
Q psy503 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM------GLVE------TKLAIIPGAGGTQRLPR-- 185 (333)
Q Consensus 120 ~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f------~~pe------~~~Gl~p~~g~~~~L~r-- 185 (333)
+.+.+.++...+||||+.++|.|.+||+.++++||.++|++.+.+ +.+. .++|+.+....+..+.+
T Consensus 367 i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s 446 (584)
T TIGR00705 367 IRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVS 446 (584)
T ss_pred HHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCC
Confidence 344555566778999999999999999999999999999999876 5553 57888887666655543
Q ss_pred --------------------------ccCHHH-----HHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHH
Q psy503 186 --------------------------IVGIPL-----AKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIA 234 (333)
Q Consensus 186 --------------------------~iG~~~-----a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a 234 (333)
.++..+ ..+.+.+|+.++++||+++||||++-. +++|.+.|
T Consensus 447 ~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~--------~~~Ai~~a 518 (584)
T TIGR00705 447 LLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGG--------LDEAVAKA 518 (584)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCC--------HHHHHHHH
Confidence 444444 678889999999999999999999954 36688888
Q ss_pred HHHhhc-CHHHHH
Q psy503 235 EDIAHN-GPIAVR 246 (333)
Q Consensus 235 ~~ia~~-~~~a~~ 246 (333)
++++.. ++.++.
T Consensus 519 ~~la~~~~~~~v~ 531 (584)
T TIGR00705 519 AKLAHCREQWSVE 531 (584)
T ss_pred HHHcCCCCCceEE
Confidence 888887 554444
|
E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. |
| >cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-14 Score=129.43 Aligned_cols=97 Identities=23% Similarity=0.224 Sum_probs=74.7
Q ss_pred cCCCCCCCC-CHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCC
Q psy503 54 NRPQARNAL-NATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPV 132 (333)
Q Consensus 54 n~p~~~Nal-t~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k 132 (333)
+++...|++ +..++.+|.++|+.++.|+++++|||+.. |.|.++... ..+.+.+..+.. +|
T Consensus 13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~-----s~gg~~~~~------------~~l~~~l~~~~~-~K 74 (214)
T cd07022 13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDID-----SPGGEVAGV------------FELADAIRAARA-GK 74 (214)
T ss_pred CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEEe-----CCCCcHHHH------------HHHHHHHHHHhc-CC
Confidence 344445654 57899999999999999999999999764 445554321 223334444444 69
Q ss_pred cEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccc
Q psy503 133 PVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVE 168 (333)
Q Consensus 133 P~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe 168 (333)
||||+++|.|.|+|+.|+++||++++++++.|+...
T Consensus 75 pViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG 110 (214)
T cd07022 75 PIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIG 110 (214)
T ss_pred CEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEeee
Confidence 999999999999999999999999999999887543
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. |
| >cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-14 Score=128.92 Aligned_cols=100 Identities=21% Similarity=0.277 Sum_probs=80.6
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l 127 (333)
|++|.++.+=... ...++.+|.++|+.++.|+++++|||++. |.|.|+... ..+.+.+..+
T Consensus 2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~~-----s~Gg~~~~~------------~~i~~~i~~~ 62 (208)
T cd07023 2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRIN-----SPGGSVVAS------------EEIYREIRRL 62 (208)
T ss_pred EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEEE-----CCCCCHHHH------------HHHHHHHHHH
Confidence 5666666441000 26789999999999999999999999984 678887652 2234566777
Q ss_pred hcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEec
Q psy503 128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166 (333)
Q Consensus 128 ~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~ 166 (333)
..++|||||+++|.|.|+|+.|+++||++++++++.|+.
T Consensus 63 ~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~ 101 (208)
T cd07023 63 RKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGS 101 (208)
T ss_pred HhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEe
Confidence 888999999999999999999999999999999998864
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad |
| >cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-14 Score=122.32 Aligned_cols=135 Identities=20% Similarity=0.227 Sum_probs=104.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechh
Q psy503 62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGS 141 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~ 141 (333)
+++.++.+|.+.|+.++.|+++++|+|... |.|.|+.. ...+...+..++||||+.++|.
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~-----s~Gg~~~~---------------~~~i~~~l~~~~kpvva~~~g~ 67 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEVN-----TPGGRVDA---------------GMNIVDALQASRKPVIAYVGGQ 67 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEEE-----CCCcCHHH---------------HHHHHHHHHHhCCCEEEEECCh
Confidence 566889999999999999999999999874 55665532 2334556667789999999999
Q ss_pred hhHhhHHHHHhCCEEEEeCCeEEeccccccCccCCh--hh----h-------hhc------ccccCHHHHHHHHHcCCCC
Q psy503 142 AYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGA--GG----T-------QRL------PRIVGIPLAKELIYTGRLV 202 (333)
Q Consensus 142 a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~--g~----~-------~~L------~r~iG~~~a~~llltG~~i 202 (333)
|.++|+.|+++||.|++.+++.|++.....+..... .. . ..+ .|.+......+++..|..+
T Consensus 68 ~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~ 147 (161)
T cd00394 68 AASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVL 147 (161)
T ss_pred hHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEE
Confidence 999999999999999999999999988775543221 00 0 011 1123444567788889999
Q ss_pred CHHHHHHcCCccee
Q psy503 203 DSTEAKSIGLVNTL 216 (333)
Q Consensus 203 sa~eAl~~Glv~~v 216 (333)
+++||+++||||+|
T Consensus 148 ~a~eA~~~GLvD~i 161 (161)
T cd00394 148 TAQEALEYGLVDAL 161 (161)
T ss_pred cHHHHHHcCCcCcC
Confidence 99999999999985
|
Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec |
| >cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.2e-14 Score=119.80 Aligned_cols=129 Identities=19% Similarity=0.161 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhH
Q psy503 65 TLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYG 144 (333)
Q Consensus 65 ~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~G 144 (333)
.+...+.+.|+.++.++. -.+.|.+.||..++ ...+...|..++||||+.++|.|.|
T Consensus 15 ~~~~~~~~~l~~~~~~~~-i~l~inspGG~~~~----------------------~~~i~~~i~~~~~pvi~~v~g~a~s 71 (160)
T cd07016 15 VTAKEFKDALDALGDDSD-ITVRINSPGGDVFA----------------------GLAIYNALKRHKGKVTVKIDGLAAS 71 (160)
T ss_pred cCHHHHHHHHHhccCCCC-EEEEEECCCCCHHH----------------------HHHHHHHHHhcCCCEEEEEcchHHh
Confidence 467788888998887743 34555665333111 1346666778899999999999999
Q ss_pred hhHHHHHhCCEEEEeCCeEEeccccccCccCChh---------------hhhhcccccC--HHHHHHHHHcCCCCCHHHH
Q psy503 145 GGLEMALACDIRVAASNVRMGLVETKLAIIPGAG---------------GTQRLPRIVG--IPLAKELIYTGRLVDSTEA 207 (333)
Q Consensus 145 gG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g---------------~~~~L~r~iG--~~~a~~llltG~~isa~eA 207 (333)
+|+.|+++||+|++++++.|+++....+..+... ....+.+..| .....+++..+..++++||
T Consensus 72 ~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA 151 (160)
T cd07016 72 AASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEA 151 (160)
T ss_pred HHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHH
Confidence 9999999999999999999999887666544322 1223667777 6777788888889999999
Q ss_pred HHcCCccee
Q psy503 208 KSIGLVNTL 216 (333)
Q Consensus 208 l~~Glv~~v 216 (333)
+++||||+|
T Consensus 152 ~~~GliD~v 160 (160)
T cd07016 152 VELGFADEI 160 (160)
T ss_pred HHcCCCCcC
Confidence 999999986
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a |
| >TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-13 Score=122.03 Aligned_cols=144 Identities=23% Similarity=0.286 Sum_probs=99.9
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l 127 (333)
|++|+++.+ ++ ....+|.++|+.+..|+++++|||+.. |.|.++.. ...+...|
T Consensus 2 v~vi~i~g~-----i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~-----s~Gg~~~~---------------~~~l~~~i 55 (207)
T TIGR00706 2 IAILPVSGA-----IA-VSPEDFDKKIKRIKDDKSIKALLLRIN-----SPGGTVVA---------------SEEIYEKL 55 (207)
T ss_pred EEEEEEEEE-----Ee-cCHHHHHHHHHHHhhCCCccEEEEEec-----CCCCCHHH---------------HHHHHHHH
Confidence 566666644 21 336789999999999999999999985 55665543 13344455
Q ss_pred hcCC--CcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccc------------cCccCC-----------------
Q psy503 128 ESIP--VPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETK------------LAIIPG----------------- 176 (333)
Q Consensus 128 ~~~~--kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~------------~Gl~p~----------------- 176 (333)
..++ ||+|+.++|.|.|+|+.|+++||.+++++++.++...+. +|+-+.
T Consensus 56 ~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~ 135 (207)
T TIGR00706 56 KKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTREL 135 (207)
T ss_pred HHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCC
Confidence 5555 999999999999999999999999999999887653332 222110
Q ss_pred -hhhhhh-----------------cccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q psy503 177 -AGGTQR-----------------LPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218 (333)
Q Consensus 177 -~g~~~~-----------------L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~ 218 (333)
...-.. -.|.+...... -++.|+.+++++|++.||||++..
T Consensus 136 s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~-~~~~~~~~~~~~A~~~gLvD~i~~ 194 (207)
T TIGR00706 136 TPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVK-KFADGRVFTGRQALKLRLVDKLGT 194 (207)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH-HHhcCCcccHHHHHHcCCCcccCC
Confidence 000000 01222233333 346789999999999999999987
|
The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively. |
| >cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.5e-12 Score=108.78 Aligned_cols=146 Identities=16% Similarity=0.242 Sum_probs=104.3
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHh
Q psy503 49 VELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLE 128 (333)
Q Consensus 49 ~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~ 128 (333)
.+|+++. .+++.....|.+.|+++.+++ +..|||.=..+ |+++ .....+...|.
T Consensus 2 ~vi~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~insp-----GG~v---------------~~~~~I~~~l~ 55 (178)
T cd07021 2 YVIPIEG-----EIDPGLAAFVERALKEAKEEG-ADAVVLDIDTP-----GGRV---------------DSALEIVDLIL 55 (178)
T ss_pred EEEEEee-----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEECc-----CCCH---------------HHHHHHHHHHH
Confidence 4566653 366778888999999998886 56666654412 2222 33455677888
Q ss_pred cCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhh--------hh------hccccc--CHHHH
Q psy503 129 SIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGG--------TQ------RLPRIV--GIPLA 192 (333)
Q Consensus 129 ~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~--------~~------~L~r~i--G~~~a 192 (333)
.+++|||+.|+|.|.++|+.++++||++++++++.|+.++.- +..+. .. -+.+.- ....+
T Consensus 56 ~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v----~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a 131 (178)
T cd07021 56 NSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI----PGDGNGAADEKVQSYWRAKMRAAAEKKGRDPDIA 131 (178)
T ss_pred hCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE----cCCCccchhHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 999999999999999999999999999999999999987543 32222 00 111122 24455
Q ss_pred HHHHHcC-------------CCCCHHHHHHcCCcceecCCCCChhHHH
Q psy503 193 KELIYTG-------------RLVDSTEAKSIGLVNTLTPQNPNQNAAY 227 (333)
Q Consensus 193 ~~llltG-------------~~isa~eAl~~Glv~~vv~~~~~~~~l~ 227 (333)
..|+-.. -.++++||++.|++|.+.++ .++++
T Consensus 132 ~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~---~~~ll 176 (178)
T cd07021 132 EAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGS---LDELL 176 (178)
T ss_pred HHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECC---HHHHh
Confidence 5665554 27999999999999999997 45554
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall |
| >cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.2e-12 Score=114.68 Aligned_cols=89 Identities=21% Similarity=0.187 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechh
Q psy503 62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGS 141 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~ 141 (333)
-+..++.+|.+.|+.+..|+++++|||+.. +..| ++.++++ +.+.+..+...+|||||.++|
T Consensus 26 ~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~-s~gg-~~~~~~e---------------l~~~i~~~~~~~kpVia~~~~- 87 (222)
T cd07018 26 SSELSLRDLLEALEKAAEDDRIKGIVLDLD-GLSG-GLAKLEE---------------LRQALERFRASGKPVIAYADG- 87 (222)
T ss_pred cCCccHHHHHHHHHHHhcCCCeEEEEEECC-CCCC-CHHHHHH---------------HHHHHHHHHHhCCeEEEEeCC-
Confidence 345678999999999999999999999998 4444 4444433 244555566679999999998
Q ss_pred hhHhhHHHHHhCCEEEEeCCeEEeccc
Q psy503 142 AYGGGLEMALACDIRVAASNVRMGLVE 168 (333)
Q Consensus 142 a~GgG~~Lal~cD~rias~~a~f~~pe 168 (333)
|.+||+.|+++||.+++.+.+.|+...
T Consensus 88 ~~sggy~lasaad~I~a~p~~~vg~iG 114 (222)
T cd07018 88 YSQGQYYLASAADEIYLNPSGSVELTG 114 (222)
T ss_pred CCchhhhhhhhCCEEEECCCceEEeec
Confidence 889999999999999999999988743
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys |
| >KOG1683|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-11 Score=116.44 Aligned_cols=184 Identities=18% Similarity=0.170 Sum_probs=154.8
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
-.++..+.++ |+ .|..|.++.++|..-|+.+..+..+++..+|+...+.|++|.|..+.....+......+.++++++
T Consensus 64 y~~~~~~dmv-ie-av~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii 141 (380)
T KOG1683|consen 64 YTGFANADMV-IE-AVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEII 141 (380)
T ss_pred ccccccccee-cc-chhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHH
Confidence 4489999999 55 699999999999999999999999999999999889999999999988776666667788999999
Q ss_pred HHHhcCCCcEEEEechhhhHhh--HHHHHhCCEEEEe--CCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 125 CQLESIPVPVLAVLDGSAYGGG--LEMALACDIRVAA--SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG--~~Lal~cD~rias--~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
....+++.|+.+++||++-.|+ +.++.+|+|++.- .....+..+...++..+..-...+...+|...+...+-.|.
T Consensus 142 ~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~ 221 (380)
T KOG1683|consen 142 LALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGV 221 (380)
T ss_pred HhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhcc
Confidence 9999999999999999999998 8899999999987 55566888888886444444455566678878888888899
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHH
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLR 232 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~ 232 (333)
-|+..||++-|+++++.|. ..+++++....
T Consensus 222 gfdv~eal~~gl~~~~~~r--~~eel~~~~~~ 251 (380)
T KOG1683|consen 222 GFDVAEALAVGLGDEIGPR--IEEELLEKGRA 251 (380)
T ss_pred CccHHHHHhhccchhccch--hHHHHHHHHhh
Confidence 9999999999999999983 12455554443
|
|
| >PRK10949 protease 4; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-08 Score=104.07 Aligned_cols=153 Identities=18% Similarity=0.251 Sum_probs=101.4
Q ss_pred CCCEEEEEEcCC-----CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHH
Q psy503 45 RPGIVELCMNRP-----QARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVST 119 (333)
Q Consensus 45 ~~~v~~Itln~p-----~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 119 (333)
++.|++|+++.. ...+.++. +.+.+.|+++..|+++++|||.-..++ +... . .+.
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSpG-----Gs~~--------a----se~ 384 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSPG-----GSVT--------A----SEV 384 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCCC-----CcHH--------H----HHH
Confidence 567888887643 12233443 567888999999999999999987433 2111 1 133
Q ss_pred HHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEecccc------------ccCccCChhhhhhc----
Q psy503 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVET------------KLAIIPGAGGTQRL---- 183 (333)
Q Consensus 120 ~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~------------~~Gl~p~~g~~~~L---- 183 (333)
+.+.+.++....||+|+.+.|.|..||..++++||.++|.+.+..|.-.+ ++|+-........+
T Consensus 385 i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~ 464 (618)
T PRK10949 385 IRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVS 464 (618)
T ss_pred HHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCcc
Confidence 44455556667899999999999999999999999999998765443221 13332111100000
Q ss_pred ------------------------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q psy503 184 ------------------------------PRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218 (333)
Q Consensus 184 ------------------------------~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~ 218 (333)
.|.+..... +-+..|+.+++++|++.||||++-.
T Consensus 465 ~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v-~~ia~Grv~tg~~A~~~GLVD~lG~ 528 (618)
T PRK10949 465 ITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQI-DKIAQGHVWTGQDAKANGLVDSLGD 528 (618)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHH-HHHhcCCcccHHHHHHcCCCccCCC
Confidence 011123332 3456899999999999999999977
|
|
| >cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.3e-08 Score=84.88 Aligned_cols=150 Identities=14% Similarity=0.191 Sum_probs=105.5
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHh
Q psy503 49 VELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLE 128 (333)
Q Consensus 49 ~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~ 128 (333)
.+|.++. .+++.+...|.+.++.++++ ..+.|+|.=. |-|+.+. ....++..|.
T Consensus 2 ~vi~i~G-----~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in-----SPGG~v~---------------~~~~I~~~i~ 55 (172)
T cd07015 2 YVAQIKG-----QITSYTYDQFDRYITIAEQD-NAEAIIIELD-----TPGGRAD---------------AAGNIVQRIQ 55 (172)
T ss_pred EEEEEee-----EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE-----CCCCCHH---------------HHHHHHHHHH
Confidence 4555553 36777888899999998875 4566666554 2233222 1234556667
Q ss_pred cCCCcEEEEec---hhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCC----h-h---hhhh------cccccC--H
Q psy503 129 SIPVPVLAVLD---GSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPG----A-G---GTQR------LPRIVG--I 189 (333)
Q Consensus 129 ~~~kP~Iaav~---G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~----~-g---~~~~------L~r~iG--~ 189 (333)
..++||++.|+ |.|..+|..++++||.+++.+++.++....-.|..+. . . -... +.+.-| .
T Consensus 56 ~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~ 135 (172)
T cd07015 56 QSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNA 135 (172)
T ss_pred hcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCH
Confidence 78999999999 9999999999999999999999999987764332110 0 0 0011 111123 5
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHH
Q psy503 190 PLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAY 227 (333)
Q Consensus 190 ~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~ 227 (333)
..+..++.....++++||+++|++|.|+++ .++++
T Consensus 136 ~~a~~~v~~~~~lta~EA~~~G~iD~ia~~---~~~ll 170 (172)
T cd07015 136 TIAEEFITKDLSLTPEEALKYGVIEVVARD---INELL 170 (172)
T ss_pred HHHHHHHHhhcCcCHHHHHHcCCceeeeCC---HHHHh
Confidence 677788888899999999999999999997 55554
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle |
| >cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.5e-08 Score=82.80 Aligned_cols=135 Identities=14% Similarity=0.105 Sum_probs=91.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechh
Q psy503 62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGS 141 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~ 141 (333)
++..+..++.+.|..++.++..+.|+|.=. |.|+++ .....++..+..+++|+++.+.|.
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In-----SpGG~v---------------~~~~~i~~~i~~~~~~v~~~~~g~ 68 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN-----SPGGDV---------------FAGMAIYDTIKFIKADVVTIIDGL 68 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE-----CCCCcH---------------HHHHHHHHHHHhcCCCceEEEEee
Confidence 567888999999999998876665555443 122222 122345566667789999999999
Q ss_pred hhHhhHHHHHhCC--EEEEeCCeEEeccccccCccCChhhhh---------------hcccc--cCHHHHHHHHHcCCCC
Q psy503 142 AYGGGLEMALACD--IRVAASNVRMGLVETKLAIIPGAGGTQ---------------RLPRI--VGIPLAKELIYTGRLV 202 (333)
Q Consensus 142 a~GgG~~Lal~cD--~rias~~a~f~~pe~~~Gl~p~~g~~~---------------~L~r~--iG~~~a~~llltG~~i 202 (333)
|.++|..|+++|| .|++.+++.|.+....-+......-.. .+.+. .......+++-.+..+
T Consensus 69 aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~ 148 (162)
T cd07013 69 AASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWL 148 (162)
T ss_pred hhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccc
Confidence 9999999999999 688888888776443222111000000 11111 2355666777778888
Q ss_pred CHHHHHHcCCccee
Q psy503 203 DSTEAKSIGLVNTL 216 (333)
Q Consensus 203 sa~eAl~~Glv~~v 216 (333)
+|+||+++||||++
T Consensus 149 sa~eA~~~GliD~i 162 (162)
T cd07013 149 SAREAVEYGFADTI 162 (162)
T ss_pred cHHHHHHcCCCCcC
Confidence 99999999999985
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas |
| >PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=3e-07 Score=81.74 Aligned_cols=134 Identities=15% Similarity=0.169 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCce--EEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 61 ALNATLVEEILTAVEAIRGDEEVR--CVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 61 alt~~~~~eL~~~l~~~~~d~~v~--vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
.++..+...+...|..++.++..+ .+.|.+. | +|+. ....++..+...+.|+++.+
T Consensus 39 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSp-G------G~v~---------------~g~~I~d~i~~~~~~v~t~~ 96 (200)
T PRK00277 39 EVEDHMANLIVAQLLFLEAEDPDKDIYLYINSP-G------GSVT---------------AGLAIYDTMQFIKPDVSTIC 96 (200)
T ss_pred EECHHHHHHHHHHHHHhhccCCCCCEEEEEECC-C------CcHH---------------HHHHHHHHHHhcCCCEEEEE
Confidence 377889999999999887654333 2333443 2 2221 12234455666778999999
Q ss_pred chhhhHhhHHHHHhCC--EEEEeCCeEEeccccccCccCChhhh------------------hhcccccC--HHHHHHHH
Q psy503 139 DGSAYGGGLEMALACD--IRVAASNVRMGLVETKLAIIPGAGGT------------------QRLPRIVG--IPLAKELI 196 (333)
Q Consensus 139 ~G~a~GgG~~Lal~cD--~rias~~a~f~~pe~~~Gl~p~~g~~------------------~~L~r~iG--~~~a~~ll 196 (333)
.|.|.+.|..|+++++ .|++.+++.|++....-|. .|.. ..+...-| .....+++
T Consensus 97 ~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~ 173 (200)
T PRK00277 97 IGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF---QGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDT 173 (200)
T ss_pred EeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence 9999999999998743 5666666666554432111 1111 11222223 45666677
Q ss_pred HcCCCCCHHHHHHcCCcceecCC
Q psy503 197 YTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 197 ltG~~isa~eAl~~Glv~~vv~~ 219 (333)
-.+..++|+||+++||||+|+++
T Consensus 174 ~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 174 DRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred hCCccccHHHHHHcCCccEEeec
Confidence 77889999999999999999985
|
|
| >PRK11778 putative inner membrane peptidase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.2e-07 Score=85.05 Aligned_cols=150 Identities=22% Similarity=0.228 Sum_probs=93.3
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
++.|++|.++.+=..+ -...+-.++...+..+..+ ..|||.-.+++ +.+.. . ......+
T Consensus 89 ~~~v~VI~~~G~I~~~-~~~~l~e~i~a~l~~A~~~---~aVvLridSpG-----G~v~~--------s----~~a~~~l 147 (330)
T PRK11778 89 KPRLFVLDFKGDIDAS-EVESLREEITAILAVAKPG---DEVLLRLESPG-----GVVHG--------Y----GLAASQL 147 (330)
T ss_pred CCeEEEEEEEEEECCC-cchhhHHHHHHHHHhccCC---CeEEEEEeCCC-----CchhH--------H----HHHHHHH
Confidence 4679999988652111 1223445566666555433 46777665332 22211 0 0111123
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccC----------------
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG---------------- 188 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG---------------- 188 (333)
.++....||+++.+++.|..||..++++||.+++.+.+.+|.-.+-.. .|... .|-.++|
T Consensus 148 ~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~~~---~lLeKlGI~~evi~aG~yK~a~~ 223 (330)
T PRK11778 148 QRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPNFH---RLLKKHDIDVELHTAGEYKRTLT 223 (330)
T ss_pred HHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccCHH---HHHHHCCCceEEEEecCccCCCC
Confidence 445677899999999999999999999999999999987774433211 12211 1111222
Q ss_pred -------------------------------H-HHHHHHHHcCCCCCHHHHHHcCCcceecCC
Q psy503 189 -------------------------------I-PLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 189 -------------------------------~-~~a~~llltG~~isa~eAl~~Glv~~vv~~ 219 (333)
+ ....+-+.+|+.+++++|++.||||++...
T Consensus 224 pf~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~ 286 (330)
T PRK11778 224 LFGENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTS 286 (330)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCH
Confidence 1 122345668999999999999999999884
|
|
| >PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.9e-06 Score=75.12 Aligned_cols=167 Identities=12% Similarity=0.093 Sum_probs=108.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 59 ~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
...++++-.+...+.++.+++. .+-+|-|.-+ ++++. |.+-. .......+..++..+....+|+|+.|
T Consensus 76 ~G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDt-pGa~~-g~~aE---------~~G~~~~ia~~~~~~s~~~VP~IsVI 143 (256)
T PRK12319 76 FGQPHPEGYRKALRLMKQAEKF-GRPVVTFINT-AGAYP-GVGAE---------ERGQGEAIARNLMEMSDLKVPIIAII 143 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEEC-CCcCC-CHhHH---------hccHHHHHHHHHHHHhCCCCCEEEEE
Confidence 4667899999999999988765 3456666555 44443 33211 11234556677778889999999999
Q ss_pred chhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q psy503 139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218 (333)
Q Consensus 139 ~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~ 218 (333)
-|.|.|||......||++++.+++.|+. +.|.+.+...+...--...+.+.+ .+++.++++.|+||+|+|
T Consensus 144 ~G~~~gGgA~a~~~~D~v~m~~~a~~~v------~~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD~ii~ 213 (256)
T PRK12319 144 IGEGGSGGALALAVADQVWMLENTMYAV------LSPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVDKVIP 213 (256)
T ss_pred eCCcCcHHHHHhhcCCEEEEecCceEEE------cCHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCcEecC
Confidence 9999999888888999999999988763 223333333333322222333333 779999999999999998
Q ss_pred CC-CChhH----HHHHHHHHHHHHhhcCHHHHHH
Q psy503 219 QN-PNQNA----AYLASLRIAEDIAHNGPIAVRM 247 (333)
Q Consensus 219 ~~-~~~~~----l~~~a~~~a~~ia~~~~~a~~~ 247 (333)
.. .++++ +.+...+...++...++..+..
T Consensus 214 e~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 247 (256)
T PRK12319 214 EHGYFSSEIIDMIKKNLIEELAQLSQKPLEQLLE 247 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 53 11222 2233334455556666655543
|
|
| >PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.4e-06 Score=77.94 Aligned_cols=134 Identities=17% Similarity=0.213 Sum_probs=95.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec
Q psy503 62 LNATLVEEILTAVEAIRGDEEVR--CVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d~~v~--vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~ 139 (333)
++.++..++...|..++.++..+ .|.|.+. | +++. ....++..|..++.|+++.+.
T Consensus 44 I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSp-G------G~v~---------------~g~~I~d~i~~~~~~v~t~~~ 101 (207)
T PRK12553 44 VDDASANDVMAQLLVLESIDPDRDITLYINSP-G------GSVT---------------AGDAIYDTIQFIRPDVQTVCT 101 (207)
T ss_pred ECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCC-C------CcHH---------------HHHHHHHHHHhcCCCcEEEEE
Confidence 77899999999999998654333 3334444 2 2221 123456666677889999999
Q ss_pred hhhhHhhHHHHHhCC--EEEEeCCeEEecccccc-CccCChhhh------------------hhccccc--CHHHHHHHH
Q psy503 140 GSAYGGGLEMALACD--IRVAASNVRMGLVETKL-AIIPGAGGT------------------QRLPRIV--GIPLAKELI 196 (333)
Q Consensus 140 G~a~GgG~~Lal~cD--~rias~~a~f~~pe~~~-Gl~p~~g~~------------------~~L~r~i--G~~~a~~ll 196 (333)
|.|.+.|..|+++|| .|++.+++.|.+-.... |.. .|.. ..+.+.- ......+++
T Consensus 102 G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~--~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~ 179 (207)
T PRK12553 102 GQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGI--RGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDT 179 (207)
T ss_pred eehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCC--ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999999 59999999988876542 211 1110 1122222 355666777
Q ss_pred HcCCCCCHHHHHHcCCcceecCC
Q psy503 197 YTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 197 ltG~~isa~eAl~~Glv~~vv~~ 219 (333)
-.+..++|+||+++||||+|+++
T Consensus 180 ~~~~~lta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 180 DRDKWLTAEEAKDYGLVDQIITS 202 (207)
T ss_pred hcCccccHHHHHHcCCccEEcCc
Confidence 78999999999999999999986
|
|
| >CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-05 Score=75.45 Aligned_cols=167 Identities=10% Similarity=0.072 Sum_probs=108.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 59 ~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
...++++-++...+.++.+++.. +-+|-|.-+ +++++ |.+-. .......+...+..+.....|+|+.|
T Consensus 132 ~G~~~p~g~rKa~Rlm~lA~~f~-lPIItlvDT-pGA~~-G~~AE---------~~G~~~aiar~l~~~a~~~VP~IsVV 199 (322)
T CHL00198 132 FGMPSPGGYRKALRLMKHANKFG-LPILTFIDT-PGAWA-GVKAE---------KLGQGEAIAVNLREMFSFEVPIICTI 199 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeC-CCcCc-CHHHH---------HHhHHHHHHHHHHHHHcCCCCEEEEE
Confidence 45688999999999999887653 455555554 55454 32211 11233455666677788899999999
Q ss_pred chhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q psy503 139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218 (333)
Q Consensus 139 ~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~ 218 (333)
-|.|.|||......||++++.++++|+. +.|.+.++.++...- ++.+ +...-+++|++.+++|+||+|+|
T Consensus 200 iGeggsGGAlal~~aD~V~m~e~a~~sV------isPEg~a~Il~~d~~---~a~~-aA~~~~ita~dL~~~giiD~ii~ 269 (322)
T CHL00198 200 IGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPEACAAILWKDSK---KSLD-AAEALKITSEDLKVLGIIDEIIP 269 (322)
T ss_pred eCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHHHHHHHHhcchh---hHHH-HHHHcCCCHHHHHhCCCCeEecc
Confidence 9999888866555699999999998773 234444444444322 2222 23345899999999999999998
Q ss_pred CC-----CChhH----HHHHHHHHHHHHhhcCHHHHHH
Q psy503 219 QN-----PNQNA----AYLASLRIAEDIAHNGPIAVRM 247 (333)
Q Consensus 219 ~~-----~~~~~----l~~~a~~~a~~ia~~~~~a~~~ 247 (333)
.. .++++ +.+...+...++...++..+..
T Consensus 270 Ep~ggah~~~~~~~~~l~~~~~~~l~~l~~~~~~~l~~ 307 (322)
T CHL00198 270 EPIGGAQADPASASKILKKKLIRQLDFLKILSPSELKA 307 (322)
T ss_pred CCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 42 12222 2233334555566667665544
|
|
| >cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.3e-07 Score=76.64 Aligned_cols=135 Identities=16% Similarity=0.155 Sum_probs=93.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechh
Q psy503 62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGS 141 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~ 141 (333)
++.+...++...|..++.++..+.|+|.=. |.|+|+.. ...++..+...+.|+++.+.|.
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~in-----SpGG~v~~---------------~~~i~~~l~~~~~~v~t~~~g~ 77 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYIN-----SPGGSVTA---------------GLAIYDTMQYIKPPVSTICLGL 77 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEE-----CCCCCHHH---------------HHHHHHHHHhcCCCEEEEEEeE
Confidence 677889999999999987755444443322 11222211 1234455566789999999999
Q ss_pred hhHhhHHHHHhCC--EEEEeCCeEEeccccccCccCChhh---------------hhhcccc--cCHHHHHHHHHcCCCC
Q psy503 142 AYGGGLEMALACD--IRVAASNVRMGLVETKLAIIPGAGG---------------TQRLPRI--VGIPLAKELIYTGRLV 202 (333)
Q Consensus 142 a~GgG~~Lal~cD--~rias~~a~f~~pe~~~Gl~p~~g~---------------~~~L~r~--iG~~~a~~llltG~~i 202 (333)
|.++|..+++++| .|++.+++.|.+-+...+..-...- ...+... ........++..+..+
T Consensus 78 aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l 157 (171)
T cd07017 78 AASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYM 157 (171)
T ss_pred ehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccc
Confidence 9999999999999 8999999999888766544222100 0011111 2345666777788999
Q ss_pred CHHHHHHcCCccee
Q psy503 203 DSTEAKSIGLVNTL 216 (333)
Q Consensus 203 sa~eAl~~Glv~~v 216 (333)
+++||+++||||+|
T Consensus 158 ta~EA~e~GiiD~V 171 (171)
T cd07017 158 SAEEAKEYGLIDKI 171 (171)
T ss_pred cHHHHHHcCCCccC
Confidence 99999999999986
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ |
| >COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.4e-07 Score=84.02 Aligned_cols=150 Identities=24% Similarity=0.257 Sum_probs=100.2
Q ss_pred CEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 47 GIVELCMNRPQ--ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 47 ~v~~Itln~p~--~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
.|++|.++-+= ..+.+..-..+.+.+.|+.+..|+++++|||.=..++ +.... .+.+.+.+
T Consensus 60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPG-----G~v~a------------s~~i~~~l 122 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPG-----GSVVA------------SELIARAL 122 (317)
T ss_pred EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEECcC-----CchhH------------HHHHHHHH
Confidence 46666665431 0011111235667778888888999999988765332 21111 13344555
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccC----------------
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG---------------- 188 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG---------------- 188 (333)
.++..-. |+++.|++.|..||..++++||.++|++.+..|--.+..+ ......+-.++|
T Consensus 123 ~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~----~~~~~~l~~k~Gv~~~~~~ag~~k~~~~ 197 (317)
T COG0616 123 KRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISG----APNFEELLEKLGVEKEVITAGEYKDILS 197 (317)
T ss_pred HHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCCceeeeceeEEe----cCCHHHHHHhcCCceeeeeccccccccC
Confidence 5555544 9999999999999999999999999999998884444333 222223334444
Q ss_pred ----------------------------------HHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q psy503 189 ----------------------------------IPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218 (333)
Q Consensus 189 ----------------------------------~~~a~~llltG~~isa~eAl~~Glv~~vv~ 218 (333)
......-+.+|+-+++++|++.||||++-.
T Consensus 198 ~~~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~ 261 (317)
T COG0616 198 PFRPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGG 261 (317)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCC
Confidence 222345677899999999999999999988
|
|
| >PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.5e-05 Score=73.82 Aligned_cols=168 Identities=13% Similarity=0.126 Sum_probs=110.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec
Q psy503 60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (333)
Q Consensus 60 Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~ 139 (333)
..++++-++...+.++.+++. .+-+|-|.-+ ++++ .|.+.. .......+..++..+....+|+|+.|-
T Consensus 200 G~~~peGyRKAlR~mklAekf-~lPIVtLVDT-pGA~-pG~~AE---------e~Gqa~aIAr~l~ams~l~VPiISVVi 267 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKF-GFPILTFVDT-PGAY-AGIKAE---------ELGQGEAIAFNLREMFGLRVPIIATVI 267 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeC-CCcC-CCHHHH---------HHhHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 468899999999999988765 3455655555 4444 232221 122345566777788899999999999
Q ss_pred hhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCC
Q psy503 140 GSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 140 G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~ 219 (333)
|.+.+||.....+||++++.+++.++. +.|.+.++.++....-...+.+. -.+++++++++|+||+|++.
T Consensus 268 GeGgSGGAlalg~aD~VlMle~A~ysV------isPEgaAsILwkd~~~A~eAAea----lkitA~dL~~~GiID~II~E 337 (431)
T PLN03230 268 GEGGSGGALAIGCGNRMLMMENAVYYV------ASPEACAAILWKSAAAAPKAAEA----LRITAAELVKLGVVDEIVPE 337 (431)
T ss_pred CCCCcHHHHHhhcCCEEEEecCCEEEe------cCHHHHHHHHhccccchHHHHHH----cCCCHHHHHhCCCCeEeccC
Confidence 999666655555789999999988662 23444444444443333344443 38999999999999999985
Q ss_pred C-----CChhH----HHHHHHHHHHHHhhcCHHHHHHHH
Q psy503 220 N-----PNQNA----AYLASLRIAEDIAHNGPIAVRMAK 249 (333)
Q Consensus 220 ~-----~~~~~----l~~~a~~~a~~ia~~~~~a~~~~K 249 (333)
. .+++. +.+...+...++...++..+...+
T Consensus 338 p~ggAh~d~~~~~~~l~~~i~~~l~~L~~~~~~~l~~~R 376 (431)
T PLN03230 338 PLGGAHSDPLQASKNIKEVILRHMKELMKMDPEELLQDR 376 (431)
T ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2 12222 223334455667777877665543
|
|
| >PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.4e-05 Score=72.80 Aligned_cols=167 Identities=13% Similarity=0.119 Sum_probs=109.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 59 ~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
.-.++++-.+...+.++.+++- .+-+|-|.-+ +++++ |.+-. .....+.+..++..+.....|+|+.|
T Consensus 129 ~G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDT-pGa~~-G~~aE---------~~G~~~aia~~l~~~a~~~VP~IsVI 196 (319)
T PRK05724 129 FGMPRPEGYRKALRLMKMAEKF-GLPIITFIDT-PGAYP-GIGAE---------ERGQSEAIARNLREMARLKVPIICTV 196 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeC-CCCCC-CHHHH---------hccHHHHHHHHHHHHhCCCCCEEEEE
Confidence 4567899999999999988765 4556666665 55444 43221 11234556677888889999999999
Q ss_pred chhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q psy503 139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218 (333)
Q Consensus 139 ~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~ 218 (333)
-|.|.|||......||++++.+++.|+ ++++-|++..|-+. ..++.+..- -..++++++++.|+||+|++
T Consensus 197 iGeg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~--~~~a~~aae-~~~ita~~l~~~g~iD~II~ 266 (319)
T PRK05724 197 IGEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKD--ASKAPEAAE-AMKITAQDLKELGIIDEIIP 266 (319)
T ss_pred eCCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcC--chhHHHHHH-HcCCCHHHHHHCCCceEecc
Confidence 999988887655569999999998876 33444444433332 123333333 56789999999999999998
Q ss_pred CC-----CChhH----HHHHHHHHHHHHhhcCHHHHHH
Q psy503 219 QN-----PNQNA----AYLASLRIAEDIAHNGPIAVRM 247 (333)
Q Consensus 219 ~~-----~~~~~----l~~~a~~~a~~ia~~~~~a~~~ 247 (333)
.. .++++ +.+...+-.+++...++..+..
T Consensus 267 Ep~gga~~~~~~~~~~l~~~i~~~l~~l~~~~~~~l~~ 304 (319)
T PRK05724 267 EPLGGAHRDPEAAAAALKEALLEALAELKGLSPEELLE 304 (319)
T ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 52 22222 2222334445555666655544
|
|
| >TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.44 E-value=3e-05 Score=73.05 Aligned_cols=166 Identities=13% Similarity=0.115 Sum_probs=106.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 59 ~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
...++++-.+...+.++.+++- .+-+|-|.-+ +++++ |.+.. .......+..++..+....+|+|+.|
T Consensus 129 ~G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDT-pGa~~-g~~aE---------~~G~~~aia~~l~a~s~~~VP~IsVV 196 (316)
T TIGR00513 129 FGMPAPEGYRKALRLMKMAERF-KMPIITFIDT-PGAYP-GIGAE---------ERGQSEAIARNLREMARLGVPVICTV 196 (316)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEEC-CCCCC-CHHHH---------HHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 3668899999999999988765 3556666555 55443 32211 11234556677777888999999999
Q ss_pred chhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhh-hcccccCHHHHHHHHHcCCCCCHHHHHHcCCcceec
Q psy503 139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQ-RLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLT 217 (333)
Q Consensus 139 ~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~-~L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv 217 (333)
-|.|.|||......||++++.+++.|+ ++++-|+.. .+....-...+.+ -..+++.++++.|+||.|+
T Consensus 197 iGeggsGGAla~~~aD~v~m~~~a~~s-------VisPEg~a~Il~kd~~~a~~aae----~~~~ta~~l~~~G~iD~II 265 (316)
T TIGR00513 197 IGEGGSGGALAIGVGDKVNMLEYSTYS-------VISPEGCAAILWKDASKAPKAAE----AMKITAPDLKELGLIDSII 265 (316)
T ss_pred ecccccHHHhhhccCCEEEEecCceEE-------ecCHHHHHHHhccchhhHHHHHH----HccCCHHHHHHCCCCeEec
Confidence 999977777555579999999999876 333344443 3333211222223 2677999999999999999
Q ss_pred CCC-----CChhH----HHHHHHHHHHHHhhcCHHHHHH
Q psy503 218 PQN-----PNQNA----AYLASLRIAEDIAHNGPIAVRM 247 (333)
Q Consensus 218 ~~~-----~~~~~----l~~~a~~~a~~ia~~~~~a~~~ 247 (333)
|.. .+++. +.+...+..+++...++..+..
T Consensus 266 ~ep~~ga~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~ 304 (316)
T TIGR00513 266 PEPLGGAHRNPLAAAASLKEQLLADLATLDQLSTEELKN 304 (316)
T ss_pred cCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 842 22222 2222234445555666655543
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.6e-06 Score=73.94 Aligned_cols=136 Identities=15% Similarity=0.086 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec
Q psy503 62 LNATLVEEILTAVEAIRGDEEVR--CVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d~~v~--vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~ 139 (333)
++..+...+.+.|..++..+..+ .+.|.+-|| ++ .....++..|..++.||++.+.
T Consensus 32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG-------~v---------------~ag~aI~d~i~~~~~~V~t~v~ 89 (197)
T PRK14512 32 INKDLSELFQEKILLLEALDSKKPIFVYIDSEGG-------DI---------------DAGFAIFNMIRFVKPKVFTIGV 89 (197)
T ss_pred EcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-------CH---------------HHHHHHHHHHHhCCCCEEEEEE
Confidence 66788888888888877622223 334444422 22 1123456666778899999999
Q ss_pred hhhhHhhHHHHHhCCE--EEEeCCeEEeccccccCccCChhhh---------------hhccccc--CHHHHHHHHHcCC
Q psy503 140 GSAYGGGLEMALACDI--RVAASNVRMGLVETKLAIIPGAGGT---------------QRLPRIV--GIPLAKELIYTGR 200 (333)
Q Consensus 140 G~a~GgG~~Lal~cD~--rias~~a~f~~pe~~~Gl~p~~g~~---------------~~L~r~i--G~~~a~~llltG~ 200 (333)
|.|.+.|..++++||- |++.+++.|.+-...-++.....-. ..+...- .......++-...
T Consensus 90 G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~ 169 (197)
T PRK14512 90 GLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDF 169 (197)
T ss_pred eeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCc
Confidence 9999999999999985 8999999887655433321111100 0111112 2445666666778
Q ss_pred CCCHHHHHHcCCcceecCC
Q psy503 201 LVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~ 219 (333)
.++|+||+++||||+|+++
T Consensus 170 ~lta~EA~~yGliD~I~~~ 188 (197)
T PRK14512 170 WLDSSSAVKYGLVFEVVET 188 (197)
T ss_pred ccCHHHHHHcCCccEeecC
Confidence 8999999999999999986
|
|
| >PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.5e-05 Score=77.09 Aligned_cols=169 Identities=9% Similarity=0.046 Sum_probs=111.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 59 ~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
..+++++-++...+.++.++.. .+-+|-|.-+ +++++ |.+... ......+...+..+....+|+|+.|
T Consensus 220 fG~~~peGyRKAlRlmkLAekf-gLPIVtLVDT-pGA~p-G~~AEe---------~Gq~~aIArnl~amasl~VP~ISVV 287 (762)
T PLN03229 220 FGMPTPHGYRKALRMMYYADHH-GFPIVTFIDT-PGAYA-DLKSEE---------LGQGEAIAHNLRTMFGLKVPIVSIV 287 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEEC-CCcCC-CchhHH---------HhHHHHHHHHHHHHhCCCCCEEEEE
Confidence 4567888899999999888765 3455555554 44443 322222 1234556677778889999999999
Q ss_pred chhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q psy503 139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218 (333)
Q Consensus 139 ~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~ 218 (333)
-|.|.|||......||++++.++++|+. +.|.++++..+...--...|. ..-.++|++.+++|+||.|+|
T Consensus 288 iGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaAsILwkd~~~A~eAA----e~lkiTa~dL~~lGiiD~IIp 357 (762)
T PLN03229 288 IGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKAAPKAA----EKLRITAQELCRLQIADGIIP 357 (762)
T ss_pred eCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHHHHHhcCcccHHHHH----HHcCCCHHHHHhCCCCeeecc
Confidence 9999888888777899999999987662 234444444444332222333 345899999999999999998
Q ss_pred CC-----CChhH----HHHHHHHHHHHHhhcCHHHHHHHH
Q psy503 219 QN-----PNQNA----AYLASLRIAEDIAHNGPIAVRMAK 249 (333)
Q Consensus 219 ~~-----~~~~~----l~~~a~~~a~~ia~~~~~a~~~~K 249 (333)
.. .+++. +-....+...++...++..+...+
T Consensus 358 Ep~ggAh~d~~~~~~~l~~~i~~~L~~l~~~~~~~l~~~R 397 (762)
T PLN03229 358 EPLGGAHADPSWTSQQIKIAINENMDELGKMDTEELLKHR 397 (762)
T ss_pred CCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 42 12222 223333455566677777665443
|
|
| >PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.4e-06 Score=74.71 Aligned_cols=136 Identities=15% Similarity=0.157 Sum_probs=91.6
Q ss_pred CCHHHHHHHHHHHHHHhcC-CC-ceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec
Q psy503 62 LNATLVEEILTAVEAIRGD-EE-VRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d-~~-v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~ 139 (333)
++.++...+...|..++.+ +. .-.+.|.+.|| |+ .....+...|..++.|++..+.
T Consensus 25 I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG-------~v---------------~~g~~i~~~i~~~~~~v~t~~~ 82 (182)
T PF00574_consen 25 IDEESANRLISQLLYLENEDKNKPINIYINSPGG-------DV---------------DAGLAIYDAIRSSKAPVTTVVL 82 (182)
T ss_dssp BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEB-------CH---------------HHHHHHHHHHHHSSSEEEEEEE
T ss_pred cCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCC-------cc---------------HHHHHHHHHHHhcCCCeEEEEe
Confidence 7889999999988877422 22 22344555522 22 2234566777788999999999
Q ss_pred hhhhHhhHHHHHhCCE--EEEeCCeEEeccccccCccCChhhh---------------hhcccc--cCHHHHHHHHHcCC
Q psy503 140 GSAYGGGLEMALACDI--RVAASNVRMGLVETKLAIIPGAGGT---------------QRLPRI--VGIPLAKELIYTGR 200 (333)
Q Consensus 140 G~a~GgG~~Lal~cD~--rias~~a~f~~pe~~~Gl~p~~g~~---------------~~L~r~--iG~~~a~~llltG~ 200 (333)
|.|.+.|..++++||. |++.+++.|.+-+...+......-. ..+... .......+++-...
T Consensus 83 G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~ 162 (182)
T PF00574_consen 83 GLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRDT 162 (182)
T ss_dssp EEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSSTE
T ss_pred CccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCCc
Confidence 9999999999999999 8999999999888765543211111 011111 22445556666667
Q ss_pred CCCHHHHHHcCCcceecCC
Q psy503 201 LVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~ 219 (333)
.++++||+++||||+|+.+
T Consensus 163 ~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 163 WLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp EEEHHHHHHHTSSSEEESS
T ss_pred cccHHHHHHcCCCCEeccC
Confidence 7899999999999999874
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A .... |
| >CHL00028 clpP ATP-dependent Clp protease proteolytic subunit | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.3e-05 Score=69.55 Aligned_cols=136 Identities=13% Similarity=0.158 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec
Q psy503 62 LNATLVEEILTAVEAIRGDEEVR--CVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d~~v~--vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~ 139 (333)
++.++..++...|-.++.++..+ .+-|.+.||. +. ....++..+...+.||...+-
T Consensus 39 i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~-------v~---------------~g~aIyd~m~~~~~~V~Tv~~ 96 (200)
T CHL00028 39 VDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGS-------VI---------------SGLAIYDTMQFVKPDVHTICL 96 (200)
T ss_pred ecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcc-------hh---------------hHHHHHHHHHhcCCCEEEEEE
Confidence 88999999999999887543223 3334554332 11 123456667788899999999
Q ss_pred hhhhHhhHHHHHhCC--EEEEeCCeEEeccccccCccCChhh----------------hhhcccccC--HHHHHHHHHcC
Q psy503 140 GSAYGGGLEMALACD--IRVAASNVRMGLVETKLAIIPGAGG----------------TQRLPRIVG--IPLAKELIYTG 199 (333)
Q Consensus 140 G~a~GgG~~Lal~cD--~rias~~a~f~~pe~~~Gl~p~~g~----------------~~~L~r~iG--~~~a~~llltG 199 (333)
|.|.+.|..|++++| .|++.++++|.+-....|..-+... ...+...-| .....+++-..
T Consensus 97 G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r~ 176 (200)
T CHL00028 97 GLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDMERD 176 (200)
T ss_pred EehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcC
Confidence 999999999999999 6999999999887765442111100 011111122 44556677777
Q ss_pred CCCCHHHHHHcCCcceecCC
Q psy503 200 RLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 200 ~~isa~eAl~~Glv~~vv~~ 219 (333)
..++|+||+++||||+|+++
T Consensus 177 ~~lta~EA~eyGliD~I~~~ 196 (200)
T CHL00028 177 VFMSATEAKAYGIVDLVAVN 196 (200)
T ss_pred ccCCHHHHHHcCCCcEEeec
Confidence 88999999999999999986
|
|
| >TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.2e-05 Score=68.26 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=87.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEE--EeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec
Q psy503 62 LNATLVEEILTAVEAIRGDEEVRCVLL--RSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d~~v~vvVl--~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~ 139 (333)
++.++...+...|..++.++..+-|+| .+. |+|+. ....++..+..++.|+...+.
T Consensus 35 I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSp-------GG~v~---------------~g~~I~d~l~~~~~~v~t~~~ 92 (191)
T TIGR00493 35 VNDSVANLIVAQLLFLEAEDPEKDIYLYINSP-------GGSIT---------------AGLAIYDTMQFIKPDVSTICI 92 (191)
T ss_pred EChHHHHHHHHHHHHhhccCCCCCEEEEEECC-------CCCHH---------------HHHHHHHHHHhcCCCEEEEEE
Confidence 677888888888888876543333333 333 22321 112344455556667777778
Q ss_pred hhhhHhhHHHHHhCC--EEEEeCCeEEeccccccCccCChhhh---------------hhcccccC--HHHHHHHHHcCC
Q psy503 140 GSAYGGGLEMALACD--IRVAASNVRMGLVETKLAIIPGAGGT---------------QRLPRIVG--IPLAKELIYTGR 200 (333)
Q Consensus 140 G~a~GgG~~Lal~cD--~rias~~a~f~~pe~~~Gl~p~~g~~---------------~~L~r~iG--~~~a~~llltG~ 200 (333)
|.|.+.|..+++++| .|++.+++.|.+-+...|......-. ..+.+.-| .....+++-.+.
T Consensus 93 G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~ 172 (191)
T TIGR00493 93 GQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDF 172 (191)
T ss_pred EeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCc
Confidence 999999998888765 69999999998866543321110000 11222223 456667777888
Q ss_pred CCCHHHHHHcCCcceecC
Q psy503 201 LVDSTEAKSIGLVNTLTP 218 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~ 218 (333)
.++|+||+++||||+|+.
T Consensus 173 ~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 173 FMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred cCcHHHHHHcCCccEEec
Confidence 999999999999999975
|
This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model. |
| >PF01343 Peptidase_S49: Peptidase family S49 peptidase classification | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.1e-06 Score=73.10 Aligned_cols=98 Identities=21% Similarity=0.254 Sum_probs=63.3
Q ss_pred HhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccC------------------
Q psy503 127 LESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG------------------ 188 (333)
Q Consensus 127 l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG------------------ 188 (333)
+....|||||.++|.+..++..|+++||-+++.+.+.++...+....+- ..-+-..+|
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~----~~~~l~k~GV~~~~~~~g~~K~~~~~~ 77 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLF----FKGLLEKLGVKVEVVRSGEYKSAGFPR 77 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-----HHHHHHTT-EEEEEESSTTCCCCCTT
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhcccc----HHHHHHHCCCeEEEEecCccccccCcC
Confidence 3567899999999999999999999999999999988775443322110 111111222
Q ss_pred --------------------------------HHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHH
Q psy503 189 --------------------------------IPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLR 232 (333)
Q Consensus 189 --------------------------------~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~ 232 (333)
.....+-+..|..+++++|++.||||++-. .++++....+
T Consensus 78 ~~~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~----~~~~~~~l~~ 149 (154)
T PF01343_consen 78 DPMSEEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGT----FDEAIARLAK 149 (154)
T ss_dssp SS--HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETS----HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCC----HHHHHHHHHH
Confidence 112223467899999999999999999987 3555554443
|
; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A. |
| >PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.9e-05 Score=68.71 Aligned_cols=98 Identities=17% Similarity=0.218 Sum_probs=78.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 59 ~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
.+.++.+...++.++++...++..+ .++|..-||. + ..-.++...+..++.++++.|
T Consensus 69 ~~~I~i~dse~v~raI~~~~~~~~I-dLii~TpGG~-------v---------------~AA~~I~~~l~~~~~~v~v~V 125 (285)
T PF01972_consen 69 YRYIDIDDSEFVLRAIREAPKDKPI-DLIIHTPGGL-------V---------------DAAEQIARALREHPAKVTVIV 125 (285)
T ss_pred ceeEcHhhHHHHHHHHHhcCCCCce-EEEEECCCCc-------H---------------HHHHHHHHHHHhCCCCEEEEE
Confidence 3668889999999999988777654 4445554232 1 222356667778999999999
Q ss_pred chhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhh
Q psy503 139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGG 179 (333)
Q Consensus 139 ~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~ 179 (333)
+..|+.+|..+||+||-+++++.+.+|--+.++|-.|..+.
T Consensus 126 P~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~si 166 (285)
T PF01972_consen 126 PHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAASI 166 (285)
T ss_pred CcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHHH
Confidence 99999999999999999999999999999999998886543
|
The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane |
| >TIGR03133 malonate_beta malonate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00024 Score=65.84 Aligned_cols=150 Identities=16% Similarity=0.183 Sum_probs=91.8
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC----CceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHH
Q psy503 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDE----EVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY 122 (333)
Q Consensus 47 ~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~----~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 122 (333)
.|+++-.+..-..-++....-..+.++++.+.+|+ .+-+|.|.-+ ++ .-+.+-. .....+. .+..
T Consensus 60 ~v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dS-gG-----aRlqEg~----~~L~~~a-~i~~ 128 (274)
T TIGR03133 60 PVVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDT-GG-----VRLQEAN----AGLIAIA-EIMR 128 (274)
T ss_pred EEEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcC-CC-----cChhhhH----HHHHHHH-HHHH
Confidence 35555555555667888888888999999887522 2235555444 32 3332200 0011111 1122
Q ss_pred HHHHHhcCCCcEEEEechh--hhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCH--HHHHHHHHc
Q psy503 123 MTCQLESIPVPVLAVLDGS--AYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGI--PLAKELIYT 198 (333)
Q Consensus 123 l~~~l~~~~kP~Iaav~G~--a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~--~~a~~lllt 198 (333)
....+... .|+|+.|-|+ |.||+..++.+||++|+++++++++.-. .......|. -...+-.|.
T Consensus 129 ~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP-----------~VIe~~~G~e~~~~~d~~l~ 196 (274)
T TIGR03133 129 AILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGP-----------EVIEQEAGVEEFDSRDRALV 196 (274)
T ss_pred HHHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCH-----------HHHHHhcCCCccCHHHhccc
Confidence 22333334 9999999999 8999999999999999999887765221 111111221 123344455
Q ss_pred CCCCCHHHHHHcCCcceecCC
Q psy503 199 GRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 199 G~~isa~eAl~~Glv~~vv~~ 219 (333)
.+.+.++.....|++|.++++
T Consensus 197 ~~~lGG~~~~~sG~~D~~v~d 217 (274)
T TIGR03133 197 WRTTGGKHRFLSGDADVLVED 217 (274)
T ss_pred ccccchHhHhhcccceEEeCC
Confidence 566777788889999999997
|
Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase. |
| >TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00011 Score=75.49 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHh
Q psy503 66 LVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGG 145 (333)
Q Consensus 66 ~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~Gg 145 (333)
.+.++.++|+.+..|+.|++|||.-.+ +.|..+.. .+.+++.+..+....|||||..++.+ -+
T Consensus 77 ~l~~i~~~i~~A~~D~~IkgIvL~i~~----~~g~~~~~------------~~ei~~ai~~fk~sgKpVvA~~~~~~-s~ 139 (584)
T TIGR00705 77 SLFDIVNAIRQAADDRRIEGLVFDLSN----FSGWDSPH------------LVEIGSALSEFKDSGKPVYAYGTNYS-QG 139 (584)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEccC----CCCCCHHH------------HHHHHHHHHHHHhcCCeEEEEEcccc-ch
Confidence 577999999999999999999999862 11322221 23345555666677899999888775 56
Q ss_pred hHHHHHhCCEEEEeCCeEEec
Q psy503 146 GLEMALACDIRVAASNVRMGL 166 (333)
Q Consensus 146 G~~Lal~cD~rias~~a~f~~ 166 (333)
|..|+.+||-+++.+.+.+++
T Consensus 140 ~YylAs~AD~I~~~p~G~v~~ 160 (584)
T TIGR00705 140 QYYLASFADEIILNPMGSVDL 160 (584)
T ss_pred hhhhhhhCCEEEECCCceEEe
Confidence 899999999999999877754
|
E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. |
| >PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.01 E-value=8.4e-05 Score=65.79 Aligned_cols=136 Identities=14% Similarity=0.117 Sum_probs=91.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec
Q psy503 62 LNATLVEEILTAVEAIRGDEEVR--CVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d~~v~--vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~ 139 (333)
++.++..++...|..++.++..+ .+.|.+.||..+ + ...++..+...+.||...+-
T Consensus 34 i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~-~---------------------g~aIyd~m~~~~~~V~t~~~ 91 (196)
T PRK12551 34 VTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVY-D---------------------GLGIFDTMQHVKPDVHTVCV 91 (196)
T ss_pred ecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchh-h---------------------HHHHHHHHHhcCCCEEEEEE
Confidence 88899999999999887543223 333455423211 1 12455666677889999999
Q ss_pred hhhhHhhHHHHHhCCE--EEEeCCeEEeccccccCccCChhhh---------------hhcccccC--HHHHHHHHHcCC
Q psy503 140 GSAYGGGLEMALACDI--RVAASNVRMGLVETKLAIIPGAGGT---------------QRLPRIVG--IPLAKELIYTGR 200 (333)
Q Consensus 140 G~a~GgG~~Lal~cD~--rias~~a~f~~pe~~~Gl~p~~g~~---------------~~L~r~iG--~~~a~~llltG~ 200 (333)
|.|.+.|..|++++|. |++.+++++.+-....|..-...-. ..+.+..| .....+++-...
T Consensus 92 G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~ 171 (196)
T PRK12551 92 GLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDF 171 (196)
T ss_pred EEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCc
Confidence 9999999999999985 8889999888766543321100000 01112223 345556666778
Q ss_pred CCCHHHHHHcCCcceecCC
Q psy503 201 LVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~ 219 (333)
.++|+||+++||||+|+++
T Consensus 172 ~msa~EA~eyGliD~I~~~ 190 (196)
T PRK12551 172 FMSPSEAVEYGLIDLVIDK 190 (196)
T ss_pred CCCHHHHHHcCCCcEEecc
Confidence 8899999999999999985
|
|
| >PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.8e-05 Score=66.43 Aligned_cols=135 Identities=13% Similarity=0.089 Sum_probs=91.2
Q ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 62 LNATLVEEILTAVEAIRGD---EEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d---~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
+|..+...+...|..++.. .++ .+.|.+.||. ..+| ..++..+...+-||...+
T Consensus 63 Idd~~a~~i~aqLl~L~~~~~~~~I-~lyINSpGGs-v~aG---------------------laIyd~m~~~~~~V~tv~ 119 (221)
T PRK14514 63 IDDYTANTIQAQLLYLDSVDPGKDI-SIYINSPGGS-VYAG---------------------LGIYDTMQFISSDVATIC 119 (221)
T ss_pred EcHHHHHHHHHHHHHHhccCCCCCE-EEEEECCCcc-hhhH---------------------HHHHHHHHhcCCCEEEEE
Confidence 7788888888877766542 333 3344555332 2212 235556677788999999
Q ss_pred chhhhHhhHHHHHhCCE--EEEeCCeEEeccccccCccCChhhh---------------hhcccccC--HHHHHHHHHcC
Q psy503 139 DGSAYGGGLEMALACDI--RVAASNVRMGLVETKLAIIPGAGGT---------------QRLPRIVG--IPLAKELIYTG 199 (333)
Q Consensus 139 ~G~a~GgG~~Lal~cD~--rias~~a~f~~pe~~~Gl~p~~g~~---------------~~L~r~iG--~~~a~~llltG 199 (333)
-|.|.+.|..|++++|. |++.+++.|.+-...-|......-. ..+.+..| .....+++-..
T Consensus 120 ~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~rd 199 (221)
T PRK14514 120 TGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDRD 199 (221)
T ss_pred EEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcC
Confidence 99999999999999996 8999999988776643321111100 01111223 44556667778
Q ss_pred CCCCHHHHHHcCCcceecCC
Q psy503 200 RLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 200 ~~isa~eAl~~Glv~~vv~~ 219 (333)
..++|+||+++||||+|++.
T Consensus 200 ~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 200 YWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred ccCCHHHHHHcCCccEEeec
Confidence 88999999999999999874
|
|
| >TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00079 Score=61.34 Aligned_cols=154 Identities=16% Similarity=0.147 Sum_probs=97.0
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH-hcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAI-RGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~-~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
++.-..|-=|+|. ..++.+-...+.+.+... +.+..+-+|.|.-. ++ |-.|. .++.....+.+.++
T Consensus 30 ~G~~V~vIa~~~~--~~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDt-pG-~~~g~---------~aE~~G~~~a~A~l 96 (238)
T TIGR03134 30 AGGKVTVIGVVPD--AEVGLDEALALAQAVLDVIEADDKRPIVVLVDT-PS-QAYGR---------REELLGINQALAHL 96 (238)
T ss_pred CCEEEEEEEECCC--CcCChHHHHHHHHHHHHHHHhcCCCCEEEEEeC-CC-CCCCH---------HHHHHHHHHHHHHH
Confidence 4444444445554 268877777788888774 55567777777766 44 33232 12333344455555
Q ss_pred HHHHh---cCCCcEEEEechhhhHhhHH-HHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcC
Q psy503 124 TCQLE---SIPVPVLAVLDGSAYGGGLE-MALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTG 199 (333)
Q Consensus 124 ~~~l~---~~~kP~Iaav~G~a~GgG~~-Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG 199 (333)
+..+. ..+.|+|+.|-|.++|||+. +.+.+|.++|.+++.++ ..++.+++..+.+-. ....++.-.=
T Consensus 97 ~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~-------vm~~e~aa~I~~~~~--~~~~e~a~~~ 167 (238)
T TIGR03134 97 AKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVH-------VMDLESMARVTKRSV--EELEALAKSS 167 (238)
T ss_pred HHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEE-------ecCHHHHHHHHccCH--hHHHHHHHhh
Confidence 55555 45599999999999998874 55558888887777655 455555554444433 2334443322
Q ss_pred --CCCCHHHHHHcCCcceecCCC
Q psy503 200 --RLVDSTEAKSIGLVNTLTPQN 220 (333)
Q Consensus 200 --~~isa~eAl~~Glv~~vv~~~ 220 (333)
...+.+.+.++|+||+|+++.
T Consensus 168 ~~~a~~~~~~~~~G~vd~vi~~~ 190 (238)
T TIGR03134 168 PVFAPGIENFVKLGGVHALLDVA 190 (238)
T ss_pred hhhccCHHHHHhCCCccEEeCCC
Confidence 245778899999999999973
|
Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity. |
| >PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00017 Score=64.00 Aligned_cols=135 Identities=15% Similarity=0.168 Sum_probs=93.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCc--eEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 61 ALNATLVEEILTAVEAIRGDEEV--RCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 61 alt~~~~~eL~~~l~~~~~d~~v--~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
.++.++...+...|-.++.++.- -.|-|.+.||..|+ ...++..+...+-||...+
T Consensus 35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~----------------------GlaIyd~m~~~~~~V~Ti~ 92 (201)
T PRK14513 35 PIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYA----------------------GLAIYDTMRYIKAPVSTIC 92 (201)
T ss_pred EEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhh----------------------HHHHHHHHHhcCCCEEEEE
Confidence 47888888888888777754321 23444555333221 1345666777888999999
Q ss_pred chhhhHhhHHHHHhCCE--EEEeCCeEEeccccccCccCChhhhh-----------------hcccccC--HHHHHHHHH
Q psy503 139 DGSAYGGGLEMALACDI--RVAASNVRMGLVETKLAIIPGAGGTQ-----------------RLPRIVG--IPLAKELIY 197 (333)
Q Consensus 139 ~G~a~GgG~~Lal~cD~--rias~~a~f~~pe~~~Gl~p~~g~~~-----------------~L~r~iG--~~~a~~lll 197 (333)
.|.|.+.|..|++++|- |++.+++++.+-....|.. +.... .+.+.-| ...-.+++-
T Consensus 93 ~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~ 170 (201)
T PRK14513 93 VGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDME 170 (201)
T ss_pred EeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhc
Confidence 99999999999999996 9999999988877654431 11111 1112223 445556666
Q ss_pred cCCCCCHHHHHHcCCcceecCC
Q psy503 198 TGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 198 tG~~isa~eAl~~Glv~~vv~~ 219 (333)
....++|+||+++||||+|+++
T Consensus 171 rd~~msa~EA~eyGliD~I~~~ 192 (201)
T PRK14513 171 RDYFMSPEEAKAYGLIDSVIEP 192 (201)
T ss_pred cCcccCHHHHHHcCCCcEEecc
Confidence 7788899999999999999985
|
|
| >COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00026 Score=68.93 Aligned_cols=149 Identities=14% Similarity=0.219 Sum_probs=109.0
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
++.|.++.++. .+++.+.+.+.+.++.++++.. .+|||.=+.++ .+.+.+.++.
T Consensus 25 ~~~v~vi~i~g-----~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTPG--------------------Gl~~sm~~iv 78 (436)
T COG1030 25 EKKVYVIEIDG-----AIDPASADYLQRALQSAEEENA-AAVVLELDTPG--------------------GLLDSMRQIV 78 (436)
T ss_pred CCeEEEEEecC-----ccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCCC--------------------chHHHHHHHH
Confidence 56788888875 4999999999999999998763 34444332133 1346678899
Q ss_pred HHHhcCCCcEEEEe---chhhhHhhHHHHHhCCEEEEeCCeEEeccccccCc--cC-Chh-hhh------hccccc--CH
Q psy503 125 CQLESIPVPVLAVL---DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAI--IP-GAG-GTQ------RLPRIV--GI 189 (333)
Q Consensus 125 ~~l~~~~kP~Iaav---~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl--~p-~~g-~~~------~L~r~i--G~ 189 (333)
+.|.+.+.|++..| .+.|..+|.-++++||+..+.+.+.+|-...-.+- .+ ... ... -+.+.- ..
T Consensus 79 ~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN~ 158 (436)
T COG1030 79 RAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRNP 158 (436)
T ss_pred HHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCCh
Confidence 99999999988887 44799999999999999999998888765432221 11 111 011 111222 25
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCC
Q psy503 190 PLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 190 ~~a~~llltG~~isa~eAl~~Glv~~vv~~ 219 (333)
..|.+++.-...++++||++.|++|-+..+
T Consensus 159 ~~ae~~v~~~~~l~a~eA~~~~vid~iA~~ 188 (436)
T COG1030 159 TWAERFVTENLSLTAEEALRQGVIDLIARD 188 (436)
T ss_pred HHHHHHhhhccCCChhHHHhcCccccccCC
Confidence 578899999999999999999999998886
|
|
| >PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A | Back alignment and domain information |
|---|
Probab=97.86 E-value=7.6e-05 Score=60.71 Aligned_cols=68 Identities=18% Similarity=0.320 Sum_probs=53.7
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHH
Q psy503 230 SLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRV 309 (333)
Q Consensus 230 a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~ 309 (333)
+.+..+.|...+|.++..+-+.++ ++... ++.+.+..|+....++
T Consensus 33 a~~~~~~l~~~SP~Sl~vt~~~l~---~~~~~--------------------------------sl~e~l~~E~~~a~~~ 77 (118)
T PF13766_consen 33 AQKTLETLRSGSPLSLKVTFEQLR---RGRNL--------------------------------SLAECLRMEYRLASRC 77 (118)
T ss_dssp HHHHHHHHCCS-HHHHHHHHHHHH---CCTTS---------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHH---HhhhC--------------------------------CHHHHHHHHHHHHHHH
Confidence 556667888999999999999999 77766 9999999999999999
Q ss_pred hcCccHHHHHHHHhc--cCCCCCCC
Q psy503 310 IRTQDRVEGLKSFLG--KYKPVYKG 332 (333)
Q Consensus 310 ~~~~d~~egi~afle--kr~p~~~~ 332 (333)
+..+||.|||+|.|- .+.|+|+-
T Consensus 78 ~~~~DF~EGVRA~LIDKd~~P~W~p 102 (118)
T PF13766_consen 78 MRHPDFAEGVRALLIDKDKNPKWSP 102 (118)
T ss_dssp HCCSCHHHHHHHHTTS-------SS
T ss_pred hccchHHHHHHHHHhcCCCCCCCCC
Confidence 999999999999876 46799964
|
|
| >PRK07189 malonate decarboxylase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00055 Score=64.28 Aligned_cols=150 Identities=16% Similarity=0.210 Sum_probs=88.4
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC----CceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHH
Q psy503 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDE----EVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY 122 (333)
Q Consensus 47 ~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~----~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 122 (333)
.|+++-.+..-..-++.......+..+++.+.++. -+-+|.|.-+ ++ .-+.+-. .....+. .+..
T Consensus 69 ~v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dS-GG-----aRlqEg~----~~L~~~a-~i~~ 137 (301)
T PRK07189 69 PVVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFET-GG-----VRLQEAN----AGLAAIA-EIMR 137 (301)
T ss_pred EEEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-CC-----cCccchH----HHHHHHH-HHHH
Confidence 35556666555678888889999999999887664 1445555544 32 2332210 0011111 1122
Q ss_pred HHHHHhcCCCcEEEEechh--hhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccC--HHHHHHHHHc
Q psy503 123 MTCQLESIPVPVLAVLDGS--AYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG--IPLAKELIYT 198 (333)
Q Consensus 123 l~~~l~~~~kP~Iaav~G~--a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG--~~~a~~lllt 198 (333)
....+... +|+|+.|-|+ |+||+..++.+||++|+++++.+++.... ......| .-...+.-+.
T Consensus 138 ~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~iglaGP~-----------VIe~~~G~e~~d~~d~~~v 205 (301)
T PRK07189 138 AIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLSGPE-----------VIEQEAGVEEFDSRDRALV 205 (301)
T ss_pred HHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEeccCHH-----------HHHHhcCCcccCHHHhccc
Confidence 22233344 9999999999 99999999999999999998877652211 1111111 0111222222
Q ss_pred CCCCCHHHHHHcCCcceecCC
Q psy503 199 GRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 199 G~~isa~eAl~~Glv~~vv~~ 219 (333)
.+.+.+......|.+|.++++
T Consensus 206 w~~lGG~h~~~sG~~D~~v~d 226 (301)
T PRK07189 206 WRTTGGKHRYLSGLADALVDD 226 (301)
T ss_pred ccccCcceeeecccceEEeCC
Confidence 223333445568999999997
|
|
| >PRK05654 acetyl-CoA carboxylase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0019 Score=60.68 Aligned_cols=160 Identities=15% Similarity=0.166 Sum_probs=99.9
Q ss_pred CCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHH--HHHHH
Q psy503 45 RPGIVELCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSF--VSTLR 121 (333)
Q Consensus 45 ~~~v~~Itln~p~-~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~--~~~~~ 121 (333)
++.-..|.-|.+. ...+++....+.+.++++.+... .+-+|.|... ++ ..+++ ....+ .....
T Consensus 119 ~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~ds-gG-----armqE-------gi~sL~~~ak~~ 184 (292)
T PRK05654 119 EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSAS-GG-----ARMQE-------GLLSLMQMAKTS 184 (292)
T ss_pred CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcC-CC-----cchhh-------hhhHHHhHHHHH
Confidence 5554445555543 67889999999999999988765 4567777655 43 22222 11111 11222
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHH-HHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLE-MALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~-Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
..+.++.....|.|+.+-|+|.||+.. .++.+|++|+.+++.+++-..+ .+...++. ++ .-+
T Consensus 185 ~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e----~l--pe~ 247 (292)
T PRK05654 185 AALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVRE----KL--PEG 247 (292)
T ss_pred HHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhh----hh--hhh
Confidence 334445567899999999999999765 5778999999998877753221 11111111 11 111
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhh
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAH 239 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~ 239 (333)
.-+++-+.+.|+||.|+++ .++.+...++.+.+..
T Consensus 248 ~~~ae~~~~~G~vD~Vv~~----~e~r~~l~~~L~~~~~ 282 (292)
T PRK05654 248 FQRAEFLLEHGAIDMIVHR----RELRDTLASLLALHTK 282 (292)
T ss_pred hcCHHHHHhCCCCcEEECH----HHHHHHHHHHHHHHhc
Confidence 2267777889999999996 6666655555554443
|
|
| >PRK10949 protease 4; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00047 Score=71.14 Aligned_cols=85 Identities=16% Similarity=0.140 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhH
Q psy503 65 TLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYG 144 (333)
Q Consensus 65 ~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~G 144 (333)
-.+.++.++|+.+..|+.|++|||.-.+.. |..+. ..+.+.+.+..+....||+||.-+.. --
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~g----G~~~a------------~~~eI~~ai~~fk~sGKpVvA~~~~~-~s 157 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNFA----GADQP------------SMQYIGKALREFRDSGKPVYAVGDSY-SQ 157 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCCC----CccHH------------HHHHHHHHHHHHHHhCCeEEEEecCc-cc
Confidence 345689999999999999999999987321 21111 12334555666667789999854444 45
Q ss_pred hhHHHHHhCCEEEEeCCeEEec
Q psy503 145 GGLEMALACDIRVAASNVRMGL 166 (333)
Q Consensus 145 gG~~Lal~cD~rias~~a~f~~ 166 (333)
++..|+.+||-+++.+.+.+++
T Consensus 158 ~~YyLASaAD~I~l~P~G~v~~ 179 (618)
T PRK10949 158 GQYYLASFANKIYLSPQGVVDL 179 (618)
T ss_pred hhhhhhhhCCEEEECCCceEEE
Confidence 6899999999999999877664
|
|
| >TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0031 Score=59.00 Aligned_cols=157 Identities=12% Similarity=0.172 Sum_probs=97.3
Q ss_pred CCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHH--HHHHH
Q psy503 45 RPG-IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSF--VSTLR 121 (333)
Q Consensus 45 ~~~-v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~--~~~~~ 121 (333)
++. |+++-.+..-..-+++....+.+.++++.+... .+-+|.+... +++ -+++ ....+ .....
T Consensus 118 ~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dS-gGa-----RmqE-------g~~sL~~~ak~~ 183 (285)
T TIGR00515 118 YGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSAS-GGA-----RMQE-------ALLSLMQMAKTS 183 (285)
T ss_pred CCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcC-CCc-----cccc-------chhHHHhHHHHH
Confidence 444 444444444467889999999999999988755 4566777665 432 1211 11111 11222
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHH-HHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLE-MALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~-Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
..+.++.....|.|+++-|+|.||+.. +++.+|++++.+++.+++.... .+...+|. -+.-+
T Consensus 184 ~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~e------~lpe~ 246 (285)
T TIGR00515 184 AALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVRE------KLPEG 246 (285)
T ss_pred HHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhcC------ccchh
Confidence 234455667899999999999999765 6679999999999887753322 11111111 01111
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHH
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAED 236 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ 236 (333)
.-+++-+++.|+||.|+++ .++.+...++.+.
T Consensus 247 ~q~ae~~~~~G~vD~iv~~----~~~r~~l~~~L~~ 278 (285)
T TIGR00515 247 FQTSEFLLEHGAIDMIVHR----PEMKKTLASLLAK 278 (285)
T ss_pred cCCHHHHHhCCCCcEEECc----HHHHHHHHHHHHH
Confidence 2256667889999999996 5555555555443
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >PRK12552 ATP-dependent Clp protease-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.003 Score=56.83 Aligned_cols=144 Identities=17% Similarity=0.165 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCc--eEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 61 ALNATLVEEILTAVEAIRGDEEV--RCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 61 alt~~~~~eL~~~l~~~~~d~~v--~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
.++.++...+...|-.++.++.. --+-|.+.||..|+ |-=+.. ......++..+...+-||...+
T Consensus 48 ~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~-G~~iG~------------v~~glaIyD~m~~ik~~V~Tv~ 114 (222)
T PRK12552 48 QVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYT-GDAIGF------------ETEAFAICDTMRYIKPPVHTIC 114 (222)
T ss_pred chhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccc-cccccc------------cccHHHHHHHHHhcCCCeEEEE
Confidence 34455888888888777654321 23445666444343 310000 0112234555566677889999
Q ss_pred chhhhHhhHHHHHhCCE--EEEeCCeEEeccccccCccCChhhhh-----------------hcccccC--HHHHHHHHH
Q psy503 139 DGSAYGGGLEMALACDI--RVAASNVRMGLVETKLAIIPGAGGTQ-----------------RLPRIVG--IPLAKELIY 197 (333)
Q Consensus 139 ~G~a~GgG~~Lal~cD~--rias~~a~f~~pe~~~Gl~p~~g~~~-----------------~L~r~iG--~~~a~~lll 197 (333)
-|.|.+.+..|++++|- |++.++++|.+.....|.. + .... .+.+.-| ...-.+++-
T Consensus 115 ~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~-G-~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~~ 192 (222)
T PRK12552 115 IGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR-G-QATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDTD 192 (222)
T ss_pred EeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc-c-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhc
Confidence 99999999999999996 8999999988877654431 1 1110 1111112 334444555
Q ss_pred cCCCCCHHHHHHcCCcceecCC
Q psy503 198 TGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 198 tG~~isa~eAl~~Glv~~vv~~ 219 (333)
.-..++|+||+++||||+|+.+
T Consensus 193 rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 193 RMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred CCCcCCHHHHHHcCCCcEEecc
Confidence 5677899999999999999975
|
|
| >CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.019 Score=53.86 Aligned_cols=155 Identities=11% Similarity=0.131 Sum_probs=91.6
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHH
Q psy503 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ 126 (333)
Q Consensus 47 ~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~ 126 (333)
.|+++-.+..=..-++....-+.+.++++.+.+.. +-+|++... + |.-+++-.. ....+ ......+..
T Consensus 134 ~v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~r-lPlV~l~~S-G-----GARmQEg~~----sL~qm-ak~saa~~~ 201 (296)
T CHL00174 134 PVALGVMDFQFMGGSMGSVVGEKITRLIEYATNES-LPLIIVCAS-G-----GARMQEGSL----SLMQM-AKISSALYD 201 (296)
T ss_pred EEEEEEECCcccccCcCHHHHHHHHHHHHHHHHcC-CCEEEEECC-C-----Cccccccch----hhhhh-HHHHHHHHH
Confidence 35555555554678899999999999999887654 456666665 3 233322100 00011 111111222
Q ss_pred -HhcCCCcEEEEechhhhHhhHHH-HHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCH
Q psy503 127 -LESIPVPVLAVLDGSAYGGGLEM-ALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDS 204 (333)
Q Consensus 127 -l~~~~kP~Iaav~G~a~GgG~~L-al~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa 204 (333)
...-..|.|+.+.|+|.||+... ++.||++|+.+++.+++...+ .....+|. -+.-+--++
T Consensus 202 ~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPr-----------VIe~t~ge------~lpe~fq~a 264 (296)
T CHL00174 202 YQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKR-----------VIEQTLNK------TVPEGSQAA 264 (296)
T ss_pred HHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHH-----------HHHHhcCC------cCCcccccH
Confidence 22457999999999999999865 777999999888876643221 00011110 001112257
Q ss_pred HHHHHcCCcceecCCCCChhHHHHHHHHHH
Q psy503 205 TEAKSIGLVNTLTPQNPNQNAAYLASLRIA 234 (333)
Q Consensus 205 ~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a 234 (333)
+-.++.|+||.||+. .++-+...++.
T Consensus 265 e~l~~~G~vD~iV~r----~~lr~~l~~ll 290 (296)
T CHL00174 265 EYLFDKGLFDLIVPR----NLLKGVLSELF 290 (296)
T ss_pred HHHHhCcCceEEEcH----HHHHHHHHHHH
Confidence 778889999999994 55555444443
|
|
| >TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.01 Score=60.19 Aligned_cols=151 Identities=14% Similarity=0.233 Sum_probs=97.2
Q ss_pred EEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHh
Q psy503 50 ELCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLE 128 (333)
Q Consensus 50 ~Itln~p~-~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~ 128 (333)
.|.-|+|. ...+++++-.+...+.++.+++. .+-+|.|.-. ++ |..|.+- +....+....+++..+.
T Consensus 318 ~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs-~G-~~~g~~~---------E~~g~~~~~a~~~~a~~ 385 (512)
T TIGR01117 318 GIIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDV-PG-FLPGVNQ---------EYGGIIRHGAKVLYAYS 385 (512)
T ss_pred EEEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeC-cC-ccccHHH---------HHHHHHHHHHHHHHHHH
Confidence 33344443 44679999999999999988764 5667777666 44 5555321 22334556667788888
Q ss_pred cCCCcEEEEechhhhHhhHHHHH----hCCEEEEeCCeEEeccccccCccCChhhhhhc-ccccC----HHHHHHHH---
Q psy503 129 SIPVPVLAVLDGSAYGGGLEMAL----ACDIRVAASNVRMGLVETKLAIIPGAGGTQRL-PRIVG----IPLAKELI--- 196 (333)
Q Consensus 129 ~~~kP~Iaav~G~a~GgG~~Lal----~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L-~r~iG----~~~a~~ll--- 196 (333)
....|.|+.|-|.+.|||..-.. .+|++++.+++.++. .++.++...+ .+.+. ...+....
T Consensus 386 ~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v-------~~pe~a~~i~~~~~l~~~~~~~~~~~~~~~~ 458 (512)
T TIGR01117 386 EATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAV-------MGPAGAANIIFRKDIKEAKDPAATRKQKIAE 458 (512)
T ss_pred hCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEee-------cCHHHHHHHHhhhhcccccCHHHHHHHHHHH
Confidence 89999999999999888654433 289999888877663 3333333322 22111 11111111
Q ss_pred HcCCCCCHHHHHHcCCcceecCC
Q psy503 197 YTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 197 ltG~~isa~eAl~~Glv~~vv~~ 219 (333)
+.-+..++..+.+.|+||.|+++
T Consensus 459 ~~~~~~~~~~~a~~g~vD~VI~P 481 (512)
T TIGR01117 459 YREEFANPYKAAARGYVDDVIEP 481 (512)
T ss_pred HHHhhcCHHHHHhcCCCCeeECh
Confidence 12235588899999999999997
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. |
| >PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0048 Score=62.31 Aligned_cols=139 Identities=20% Similarity=0.263 Sum_probs=88.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l 127 (333)
+.++-.+.--...++.......+.++++.+.+.. +-+|.|.-. ++.+ + .+.+-.. ....+-. +..-..++
T Consensus 59 v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l~ds-gGa~--~-r~~eg~~----~l~~~g~-i~~~~~~~ 128 (493)
T PF01039_consen 59 VVVIAQDFTVLGGSVGEVHGEKIARAIELALENG-LPLVYLVDS-GGAF--L-RMQEGVE----SLMGMGR-IFRAIARL 128 (493)
T ss_dssp EEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHT-EEEEEEEEE-SSBC--G-GGGGHHH----HHHHHHH-HHHHHHHH
T ss_pred EEEEEeccceecCCCCcccceeeehHHHHHHHcC-CCcEEeccc-cccc--c-ccchhhh----hhhhhHH-HHHHHHHH
Confidence 4444444444678899999999999999887664 445555443 2221 1 3333111 1112222 22333445
Q ss_pred hcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCC-eEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHH
Q psy503 128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTE 206 (333)
Q Consensus 128 ~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~-a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~e 206 (333)
.. ..|+|+++.|+|.|||..++..||++|+.++ +.+++.. +... + ..+|+.++.++
T Consensus 129 ~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~G--------------------P~vv-~-~~~Ge~~~~~~ 185 (493)
T PF01039_consen 129 SG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLAG--------------------PRVV-E-SATGEEVDSEE 185 (493)
T ss_dssp HT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESST--------------------HHHH-H-HHHSSCTSHHH
T ss_pred hc-CCCeEEEEccccccchhhcccccCccccCccceEEEecc--------------------cccc-c-cccCccccchh
Confidence 55 8999999999999999999999999999987 7765321 1111 1 24568888776
Q ss_pred H-------HHcCCcceecCC
Q psy503 207 A-------KSIGLVNTLTPQ 219 (333)
Q Consensus 207 A-------l~~Glv~~vv~~ 219 (333)
. ...|++|.++++
T Consensus 186 lgG~~~h~~~sG~~d~v~~d 205 (493)
T PF01039_consen 186 LGGADVHAAKSGVVDYVVDD 205 (493)
T ss_dssp HHBHHHHHHTSSSSSEEESS
T ss_pred hhhhhhhcccCCCceEEEec
Confidence 4 468999999996
|
The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F .... |
| >COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0058 Score=53.92 Aligned_cols=97 Identities=19% Similarity=0.207 Sum_probs=64.8
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEE--EEeCCeEEeccccccCccCChhh-hhh---------------c
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIR--VAASNVRMGLVETKLAIIPGAGG-TQR---------------L 183 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~r--ias~~a~f~~pe~~~Gl~p~~g~-~~~---------------L 183 (333)
.++..+...+.||...+-|.|...|..|++++|.. ++.+++++-+-... |.+-+... ... +
T Consensus 76 AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a~Di~i~A~ei~~~~~~l~~i~ 154 (200)
T COG0740 76 AIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQASDIEIHAREILKIKERLNRIY 154 (200)
T ss_pred HHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677899999999999999999999999885 88888777654444 22111110 000 0
Q ss_pred ccccC--HHHHHHHHHcCCCCCHHHHHHcCCcceecCC
Q psy503 184 PRIVG--IPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 184 ~r~iG--~~~a~~llltG~~isa~eAl~~Glv~~vv~~ 219 (333)
...-| ..+-...+-....++|+||+++||||+|...
T Consensus 155 a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~ 192 (200)
T COG0740 155 AEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIES 192 (200)
T ss_pred HHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceeccc
Confidence 00111 2233344445667899999999999999986
|
|
| >TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.017 Score=58.63 Aligned_cols=152 Identities=14% Similarity=0.188 Sum_probs=90.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l 127 (333)
|+++-.+..=+.-++.....+.+.++++.+.+.. +-+|.|.-. ++ ..+.+-.. ....+.+.+... . .
T Consensus 84 v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dS-gG-----arm~eg~~----~l~~~~~~~~~~-~-~ 150 (512)
T TIGR01117 84 VYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDS-GG-----ARIQEAVD----ALKGYGDIFYRN-T-I 150 (512)
T ss_pred EEEEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecC-CC-----CCccccch----hhhhHHHHHHHH-H-H
Confidence 4444444444678888888999999999887664 445555444 22 22322100 001111111111 1 1
Q ss_pred hcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCe-EEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHH
Q psy503 128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV-RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTE 206 (333)
Q Consensus 128 ~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a-~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~e 206 (333)
..-..|.|++|-|+|.||+.....+||++|+++++ .+++. +...+.. .+|+.++++|
T Consensus 151 ~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~a-----------GP~vv~~-----------~~Ge~v~~e~ 208 (512)
T TIGR01117 151 ASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFIT-----------GPQVIKT-----------VTGEEVTAEQ 208 (512)
T ss_pred HcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEec-----------ChHHHHh-----------hcCcccchhh
Confidence 23358999999999999998888899999999864 44421 1111111 3345555554
Q ss_pred H-------HHcCCcceecCCCCChhHHHHHHHHHHHHH
Q psy503 207 A-------KSIGLVNTLTPQNPNQNAAYLASLRIAEDI 237 (333)
Q Consensus 207 A-------l~~Glv~~vv~~~~~~~~l~~~a~~~a~~i 237 (333)
. ..-|.+|.++++ ++++.+.+.++..-+
T Consensus 209 lGGa~~h~~~sGv~d~~~~d---e~ea~~~~r~~ls~l 243 (512)
T TIGR01117 209 LGGAMAHNSVSGVAHFIAED---DDDCIMLIRRLLSFL 243 (512)
T ss_pred cchHHHhccccceeEEecCC---hHHHHHHHHHHHHhC
Confidence 4 258999999997 466666666665544
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. |
| >COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0078 Score=55.63 Aligned_cols=135 Identities=13% Similarity=0.192 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhh
Q psy503 63 NATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSA 142 (333)
Q Consensus 63 t~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a 142 (333)
.++-++.-.+.++.+++=. .-+|-+--+ .++|. |..-.+ +...+.+.+-+..+..++.|+||.|=|--
T Consensus 132 ~PeGyRKAlRlm~~AekF~-lPiitfIDT-~GAyp-G~~AEE---------rGQ~eAIA~nL~em~~LkvPiI~iVIGEG 199 (317)
T COG0825 132 RPEGYRKALRLMKLAEKFG-LPIITFIDT-PGAYP-GIGAEE---------RGQSEAIARNLREMARLKVPIISIVIGEG 199 (317)
T ss_pred CchHHHHHHHHHHHHHHhC-CCEEEEecC-CCCCC-Ccchhh---------cccHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 3777887777777776532 334444444 33343 222222 12224455566677899999999998888
Q ss_pred hHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCC
Q psy503 143 YGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 143 ~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~ 219 (333)
-+||+.-...+|.+.+-++++|+. +.|.+.++.+|..- .++.+. .....++|++.+++||||.|+|.
T Consensus 200 gSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD~---~ka~eA-Ae~mkita~dLk~lgiID~II~E 266 (317)
T COG0825 200 GSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKDA---SKAKEA-AEAMKITAHDLKELGIIDGIIPE 266 (317)
T ss_pred CchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcCh---hhhHHH-HHHcCCCHHHHHhCCCcceeccC
Confidence 777776666789999999999882 45666666555542 233332 23458999999999999999985
|
|
| >PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.05 Score=55.76 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=90.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l 127 (333)
|+++--+..-+..+++....+.+.++++.+.+.. +-+|.|.-. ++++-.+ +...+. ....+.+.+. ...++
T Consensus 131 V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~-lPlV~l~DS-gGarl~~-q~e~~~-----~~~~~g~if~-~~~~l 201 (569)
T PLN02820 131 CMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCR-LPCIYLVDS-GGANLPR-QAEVFP-----DRDHFGRIFY-NQARM 201 (569)
T ss_pred EEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeC-CCcCCcc-cccccc-----hHhHHHHHHH-HHHHH
Confidence 3444444333678899999999999999887654 456666554 3333211 000000 0001111111 22234
Q ss_pred hcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCC-eEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHH
Q psy503 128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTE 206 (333)
Q Consensus 128 ~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~-a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~e 206 (333)
....+|.|++|-|+|.|||..+..+||++|+++. +.+.+ -|+...+ ..+|+.++++|
T Consensus 202 s~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~--------------------aGP~vV~--~~~Ge~v~~ee 259 (569)
T PLN02820 202 SSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL--------------------AGPPLVK--AATGEEVSAED 259 (569)
T ss_pred hCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe--------------------cCHHHHH--hhcCcccCHHH
Confidence 4567999999999999999999999999999874 54442 1111111 13456666655
Q ss_pred HH-------HcCCcceecCCCCChhHHHHHHHHHHHH
Q psy503 207 AK-------SIGLVNTLTPQNPNQNAAYLASLRIAED 236 (333)
Q Consensus 207 Al-------~~Glv~~vv~~~~~~~~l~~~a~~~a~~ 236 (333)
.- .-|.+|.++++ ..+.++.+.++..-
T Consensus 260 LGGa~~h~~~sGv~d~~~~d---e~~a~~~~R~lls~ 293 (569)
T PLN02820 260 LGGADVHCKVSGVSDHFAQD---ELHALAIGRNIVKN 293 (569)
T ss_pred hCCHHHhcccccccccccCc---hHHHHHHHHHHHHh
Confidence 42 47999999987 34444444444433
|
|
| >PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0094 Score=58.53 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=56.8
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHH
Q psy503 230 SLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRV 309 (333)
Q Consensus 230 a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~ 309 (333)
+.+..+.+.+.+|.++..+-+.++ ++... ++.+.+..|+....++
T Consensus 294 a~~~~~~l~~~sP~Sl~vt~~~~~---~~~~~--------------------------------~l~e~~~~e~~~~~~~ 338 (401)
T PLN02157 294 CITTLRRLKESSPLSLKVALRSIR---EGRLQ--------------------------------TLDQCLIREYRMSLQG 338 (401)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHH---HhhcC--------------------------------CHHHHHHHHHHHHHHH
Confidence 334555677899999999999999 77665 8999999999999988
Q ss_pred hc---CccHHHHHHHHhc--cCCCCCCC
Q psy503 310 IR---TQDRVEGLKSFLG--KYKPVYKG 332 (333)
Q Consensus 310 ~~---~~d~~egi~afle--kr~p~~~~ 332 (333)
+. ++||.|||+|.|- .++|+|+.
T Consensus 339 ~~~~~~~DF~EGVRA~LiDKd~~P~W~p 366 (401)
T PLN02157 339 LIGPMSGNFCEGVRARLIDKDEAPKWDP 366 (401)
T ss_pred HhcCCCchHHHHHHHHHcCCCCCCCCCC
Confidence 85 6999999999976 36899973
|
|
| >PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.1 Score=52.78 Aligned_cols=156 Identities=19% Similarity=0.238 Sum_probs=94.1
Q ss_pred CCCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQA-RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 45 ~~~v~~Itln~p~~-~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
++.-.-|--|+|.. .-+++++-.....+.+...+. -++-+|.|.-. ++ |..|.+ .+....++...++
T Consensus 292 ~G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt-pG-f~~g~~---------~E~~g~~~~ga~~ 359 (493)
T PF01039_consen 292 GGRPVGIIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT-PG-FMPGPE---------AERAGIIRAGARL 359 (493)
T ss_dssp TTEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE-CE-B--SHH---------HHHTTHHHHHHHH
T ss_pred CCcceEEEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec-cc-ccccch---------hhhcchHHHHHHH
Confidence 34433344455542 226999999999999998887 45677777766 43 555532 2233456777889
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhC----CEEEEeCCeEEeccccccCccCChhhhhhcccc-c------C--HH
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALAC----DIRVAASNVRMGLVETKLAIIPGAGGTQRLPRI-V------G--IP 190 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~c----D~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~-i------G--~~ 190 (333)
+..+..+..|+|..|-|.++|||....... |+++|.+++.++ ..++.++...+-+. + + ..
T Consensus 360 ~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~-------vm~~e~a~~i~~~~~~~~~~~~~~~~~ 432 (493)
T PF01039_consen 360 LYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIG-------VMGPEGAASILYRDELEAAEAEGADPE 432 (493)
T ss_dssp HHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEE-------SS-HHHHHHHHTHHHHHHSCHCCHSHH
T ss_pred HHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceee-------ecChhhhheeeehhhhhhhhcccchhH
Confidence 999999999999999999999887555555 788887777766 44444443332221 1 1 00
Q ss_pred --HHHHHHH-cCCCCCHHHHHHcCCcceecCC
Q psy503 191 --LAKELIY-TGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 191 --~a~~lll-tG~~isa~eAl~~Glv~~vv~~ 219 (333)
....+-. .-+..++..+...|++|.|+++
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p 464 (493)
T PF01039_consen 433 AQRAEKIAEYEDELSSPYRAASRGYVDDIIDP 464 (493)
T ss_dssp HHHHHHHHHHHHHHSSHHHHHHTTSSSEESSG
T ss_pred HHHHHHHHHHHHhcCCHHHHHhcCCCCCccCH
Confidence 0111111 1122588999999999999997
|
The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F .... |
| >PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.68 Score=47.58 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=93.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec
Q psy503 60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (333)
Q Consensus 60 Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~ 139 (333)
-+++.+-.....+.++..+. -++-+|-|.-. ++ |..|.+-+ .....+...+++..+.....|.|+.|-
T Consensus 380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~-pG-f~~G~~~E---------~~G~~~~~a~l~~A~a~~~VP~isvi~ 447 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNI-TG-FMVGSRSE---------ASGIAKAGAKMVMAVACAKVPKITIIV 447 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh-cCCCEEEEEEC-CC-CCCCHHHH---------HhhHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 45888899999999888875 46777777766 44 66554332 234567778889999999999999999
Q ss_pred hhhhHhhHHHHH----hCCEEEEeCCeEEeccccccCccCChhhhhhcccc-c------------CHHHHH-HH--HHcC
Q psy503 140 GSAYGGGLEMAL----ACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRI-V------------GIPLAK-EL--IYTG 199 (333)
Q Consensus 140 G~a~GgG~~Lal----~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~-i------------G~~~a~-~l--lltG 199 (333)
|.++|+|..-.+ ..|++++.+++. +|..++.++...+.+. + -...+. +. -..-
T Consensus 448 g~a~G~g~~aM~g~~~~~d~~~awp~A~-------i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (569)
T PLN02820 448 GGSFGAGNYGMCGRAYSPNFLFMWPNAR-------IGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAYE 520 (569)
T ss_pred CCcchHHHHHhcCcCCCCCEEEECCCCe-------EEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHHH
Confidence 999998765554 456666666655 4555555555444321 1 111111 11 1122
Q ss_pred CCCCHHHHHHcCCcceecCC
Q psy503 200 RLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 200 ~~isa~eAl~~Glv~~vv~~ 219 (333)
+..++-.|-..|+||.|++|
T Consensus 521 ~~~~p~~aa~~~~vD~VIdP 540 (569)
T PLN02820 521 REANPYYSTARLWDDGVIDP 540 (569)
T ss_pred HhCCHHHHHHcCCcCcccCH
Confidence 34577788899999999997
|
|
| >COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.47 Score=43.81 Aligned_cols=158 Identities=16% Similarity=0.210 Sum_probs=101.8
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHH--HHHHHHHH
Q psy503 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSF--VSTLRYMT 124 (333)
Q Consensus 47 ~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~--~~~~~~l~ 124 (333)
.+++..++..=-..++..-.=..+.++++.+-.+. +.+|+++.+ |+ .-+++ ....+ +......+
T Consensus 123 pvv~av~df~FmgGSmGsVvGeki~ra~E~A~e~k-~P~v~f~aS-GG-----ARMQE-------g~lSLMQMaktsaAl 188 (294)
T COG0777 123 PVVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDK-LPLVLFSAS-GG-----ARMQE-------GILSLMQMAKTSAAL 188 (294)
T ss_pred EEEEEEEeccccccchhHHHHHHHHHHHHHHHHhC-CCEEEEecC-cc-----hhHhH-------HHHHHHHHHHHHHHH
Confidence 35555555544457777777788999998887654 678888887 33 22222 11111 23445567
Q ss_pred HHHhcCCCcEEEEechhhhHhh-HHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 125 CQLESIPVPVLAVLDGSAYGGG-LEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG-~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
.++.....|.|+.+..+..||= +.+++.-|+.||.+.|.+||...++ --+.....++. .--+
T Consensus 189 ~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRV-------IEQTire~LPe----------gfQ~ 251 (294)
T COG0777 189 KRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRV-------IEQTIREKLPE----------GFQT 251 (294)
T ss_pred HHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchh-------hhhhhcccCCc----------chhh
Confidence 7778889999999999999886 4799999999999888877654331 11222222221 1225
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhh
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAH 239 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~ 239 (333)
++-.++.|+||.||+. .++-.....+.+.+..
T Consensus 252 aEfLlehG~iD~iv~R----~elr~tla~ll~~~~~ 283 (294)
T COG0777 252 AEFLLEHGMIDMIVHR----DELRTTLASLLAKLTP 283 (294)
T ss_pred HHHHHHcCCceeeecH----HHHHHHHHHHHHHhCC
Confidence 6667789999999995 5565555455444443
|
|
| >COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.23 Score=50.10 Aligned_cols=102 Identities=16% Similarity=0.200 Sum_probs=63.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l 127 (333)
+.+.--+.+-+.-++.+-..+.+.++.+.+.++....+.+..+. |..+.+-.. ..+.+-+.++ ...++
T Consensus 93 ~~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsg-------Gari~~~v~----~l~g~g~iF~-~~a~~ 160 (526)
T COG4799 93 VFVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSG-------GARIQEGVP----SLAGYGRIFY-RNARA 160 (526)
T ss_pred EEEEEecCceecccccccccchHHHHHHHHHHcCCCEEEEEccc-------ccccccCcc----ccccchHHHH-HHHHh
Confidence 44444445557778887778888888888776544344444443 333322110 0111111122 22233
Q ss_pred hcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCe
Q psy503 128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162 (333)
Q Consensus 128 ~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a 162 (333)
... +|.|++|-|+|.|||.-+-..||++|+.++.
T Consensus 161 Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~ 194 (526)
T COG4799 161 SGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQ 194 (526)
T ss_pred ccC-CCEEEEEEecCcccccccccccceEEEEcCC
Confidence 334 9999999999999999999999999999884
|
|
| >KOG0840|consensus | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.87 Score=41.61 Aligned_cols=132 Identities=16% Similarity=0.240 Sum_probs=71.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEech
Q psy503 62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLV-KDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDG 140 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~-g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G 140 (333)
+++++-..+...|-.++.+++-|=+.+.=.. |+.-.+| ..++..+..++-||-...=|
T Consensus 101 Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtag---------------------lAIYDtMq~ik~~V~Tic~G 159 (275)
T KOG0840|consen 101 IDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAG---------------------LAIYDTMQYIKPDVSTICVG 159 (275)
T ss_pred CcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchh---------------------hhHHHHHHhhCCCceeeehh
Confidence 7788888888888888766655655443321 2222222 12223333444444444457
Q ss_pred hhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcc--------ccc--------------C--HHHHHHHH
Q psy503 141 SAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLP--------RIV--------------G--IPLAKELI 196 (333)
Q Consensus 141 ~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~--------r~i--------------G--~~~a~~ll 196 (333)
.|.+-|..|..+ .+..-+|++|..++=|.-+.|++.--. .++ | .....+-+
T Consensus 160 ~Aas~aalLLaa-----G~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~ 234 (275)
T KOG0840|consen 160 LAASMAALLLAA-----GAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDM 234 (275)
T ss_pred hHHhHHHHHHhc-----CCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhh
Confidence 777666554443 345567777777766644443321100 000 0 11111222
Q ss_pred HcCCCCCHHHHHHcCCcceecCC
Q psy503 197 YTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 197 ltG~~isa~eAl~~Glv~~vv~~ 219 (333)
-.-+.++|+||+++||||.|+..
T Consensus 235 dRd~fmsa~EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 235 DRDRFMSAEEAKEYGLIDKVIDH 257 (275)
T ss_pred cccccCCHHHHHHhcchhhhhcC
Confidence 23345699999999999999873
|
|
| >COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=90.52 E-value=1.5 Score=44.35 Aligned_cols=152 Identities=16% Similarity=0.235 Sum_probs=96.4
Q ss_pred EEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRP-QARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ 126 (333)
Q Consensus 48 v~~Itln~p-~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~ 126 (333)
|++|- |+| ...-+|+.+....-.+.+ ++....++-.|.|.-. ++ |..|.|-. ....++....++.+
T Consensus 326 VGiIA-Nqp~~~~G~l~~~sa~KaArFI-~~cd~~~iPlv~L~d~-pG-Fm~G~~~E---------~~giik~Gakl~~A 392 (526)
T COG4799 326 VGIIA-NQPRHLGGVLDIDSADKAARFI-RLCDAFNIPLVFLVDT-PG-FMPGTDQE---------YGGIIKHGAKLLYA 392 (526)
T ss_pred EEEEe-cCccccccccchHHHHHHHHHH-HhhhccCCCeEEEeCC-CC-CCCChhHH---------hChHHHhhhHHHhh
Confidence 44444 444 356789999999999888 4555567778888776 44 88886543 33566777889999
Q ss_pred HhcCCCcEEEEechhhhHhhHHHH----HhCCEEEEeCCeEEeccccccCccCChhhhhhccc-ccC----HHHH-----
Q psy503 127 LESIPVPVLAVLDGSAYGGGLEMA----LACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPR-IVG----IPLA----- 192 (333)
Q Consensus 127 l~~~~kP~Iaav~G~a~GgG~~La----l~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r-~iG----~~~a----- 192 (333)
+....+|.|..|-|.++|||.... +.+|+.+|.+++.+ +..-+.|+...+-+ .+. +..-
T Consensus 393 ~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~a~i-------aVMG~egAv~i~~~k~l~~~~~~~~~~~~~~ 465 (526)
T COG4799 393 VAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPTAEI-------AVMGPEGAVSILYRKELAAAERPEEREALLR 465 (526)
T ss_pred HhhccCCeEEEEecccccceeeeecCccCCCceeEecCccee-------eecCHHHHHHHHHHHHhhcccCchhHHHHHH
Confidence 999999999999999999986433 33555555555554 44333444333332 221 0000
Q ss_pred --HHHHHcCCCCCHHHHHHcCCcceecCC
Q psy503 193 --KELIYTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 193 --~~llltG~~isa~eAl~~Glv~~vv~~ 219 (333)
...-+.-+-.++--|.+.|++|.|+++
T Consensus 466 ~~~~~eY~~~~~~p~~aa~r~~iD~vI~p 494 (526)
T COG4799 466 KQLIAEYEEQFSNPYYAAERGYIDAVIDP 494 (526)
T ss_pred HHHHHHHHHhccchHHHHHhCCCCcccCH
Confidence 111111222455567778999999997
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 333 | ||||
| 1hzd_A | 272 | Crystal Structure Of Human Auh Protein, An Rna-Bind | 1e-54 | ||
| 3kqf_A | 265 | 1.8 Angstrom Resolution Crystal Structure Of Enoyl- | 6e-51 | ||
| 2pbp_A | 258 | Crystal Structure Of Enoyl-Coa Hydrates Subunit I ( | 5e-30 | ||
| 3h81_A | 278 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 5e-30 | ||
| 3q0j_A | 258 | Crystal Structure Of The Mycobacterium Tuberculosis | 6e-30 | ||
| 3pzk_A | 257 | Crystal Structure Of The Mycobacterium Tuberculosis | 6e-30 | ||
| 4fzw_A | 258 | Crystal Structure Of The Paaf-paag Hydratase-isomer | 6e-30 | ||
| 1dub_A | 261 | 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph | 4e-28 | ||
| 1ey3_A | 258 | Structure Of Enoyl-Coa Hydratase Complexed With The | 6e-28 | ||
| 1mj3_A | 260 | Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata | 6e-28 | ||
| 2hw5_A | 286 | The Crystal Structure Of Human Enoyl-Coenzyme A (Co | 5e-27 | ||
| 3moy_A | 263 | Crystal Structure Of Probable Enoyl-Coa Hydratase F | 1e-25 | ||
| 3r0o_A | 273 | Crystal Structure Of Carnitinyl-Coa Hydratase From | 7e-24 | ||
| 3t88_A | 289 | Crystal Structure Of Escherichia Coli Menb In Compl | 2e-23 | ||
| 4els_A | 285 | Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Co | 3e-23 | ||
| 3p85_A | 270 | Crystal Structure Enoyl-Coa Hydratase From Mycobact | 5e-23 | ||
| 3qyr_A | 253 | Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M | 5e-23 | ||
| 4f47_A | 278 | The Structure Of Enoyl-Coa Hydratase Echa19 From My | 5e-23 | ||
| 2uzf_A | 273 | Crystal Structure Of Staphylococcus Aureus 1,4-Dihy | 1e-22 | ||
| 3pea_A | 261 | Crystal Structure Of Enoyl-Coa Hydratase From Bacil | 2e-22 | ||
| 3h02_A | 288 | 2.15 Angstrom Resolution Crystal Structure Of Napht | 2e-22 | ||
| 1wdk_A | 715 | Fatty Acid Beta-Oxidation Multienzyme Complex From | 2e-22 | ||
| 3rsi_A | 265 | The Structure Of A Putative Enoyl-Coa HydrataseISOM | 7e-22 | ||
| 2iex_A | 272 | Crystal Structure Of Dihydroxynapthoic Acid Synthet | 9e-22 | ||
| 2ppy_A | 265 | Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) F | 5e-21 | ||
| 1uiy_A | 253 | Crystal Structure Of Enoyl-Coa Hydratase From Therm | 1e-20 | ||
| 3r9t_A | 267 | Structure Of Echa1_1 From Mycobacterium Paratubercu | 2e-20 | ||
| 3r9s_A | 267 | Structure Of A Carnitinyl-Coa Dehydratase From Myco | 2e-20 | ||
| 3qka_A | 261 | Crystal Structure Of Enoyl-Coa Hydratase Echa5 From | 4e-20 | ||
| 3trr_A | 256 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 1e-19 | ||
| 4eml_A | 275 | Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoy | 3e-19 | ||
| 1dci_A | 275 | Dienoyl-Coa Isomerase Length = 275 | 5e-19 | ||
| 4di1_A | 277 | Crystal Structure Of Enoyl-Coa Hydratase Echa17 Fro | 5e-19 | ||
| 3hin_A | 275 | Crystal Structure Of Putative Enoyl-Coa Hydratase F | 1e-18 | ||
| 1ef8_A | 261 | Crystal Structure Of Methylmalonyl Coa Decarboxylas | 1e-18 | ||
| 3r9q_A | 262 | Structure Of A Probable Enoyl-Coa HydrataseISOMERAS | 4e-18 | ||
| 3zw8_A | 742 | Crystal Structure Of Rat Peroxisomal Multifunctiona | 9e-18 | ||
| 2x58_A | 727 | The Crystal Structure Of Mfe1 Liganded With Coa Len | 9e-18 | ||
| 3pe8_A | 256 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 3e-17 | ||
| 3lke_A | 263 | Crystal Structure Of Enoyl-Coa Hydratase From Bacil | 3e-17 | ||
| 3zwb_A | 742 | Crystal Structure Of Rat Peroxisomal Multifunctiona | 4e-17 | ||
| 3sll_A | 290 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 1e-16 | ||
| 3myb_A | 286 | Crystal Structure Of Enoyl-Coa Hydratase Mycobacter | 2e-16 | ||
| 2vre_A | 296 | Crystal Structure Of Human Peroxisomal Delta3,5, De | 3e-16 | ||
| 1jxz_A | 269 | Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe | 4e-16 | ||
| 1nzy_A | 269 | 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo | 4e-16 | ||
| 3qxz_A | 265 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 5e-16 | ||
| 1nzy_B | 269 | 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo | 5e-16 | ||
| 2j5i_I | 276 | Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase | 1e-15 | ||
| 2j5i_B | 276 | Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase | 1e-15 | ||
| 3ome_A | 282 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 1e-15 | ||
| 2j5i_A | 276 | Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase | 2e-15 | ||
| 2vsu_C | 275 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 2e-15 | ||
| 2vss_E | 276 | Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C | 2e-15 | ||
| 2vsu_A | 276 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 2e-15 | ||
| 2vss_F | 276 | Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C | 2e-15 | ||
| 2vsu_E | 276 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 2e-15 | ||
| 2vsu_F | 276 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 2e-15 | ||
| 3he2_A | 264 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 4e-15 | ||
| 3hrx_A | 254 | Crystal Structure Of Phenylacetic Acid Degradation | 1e-14 | ||
| 3t3w_A | 279 | Crystal Structure Of Probable Enoyl-Coa Hydratase F | 1e-14 | ||
| 3p5m_A | 255 | Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS | 2e-14 | ||
| 2wtb_A | 725 | Arabidopsis Thaliana Multifuctional Protein, Mfp2 L | 2e-13 | ||
| 3swx_A | 265 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 3e-13 | ||
| 3qxi_A | 265 | Crystal Structure Of Enoyl-Coa Hydratase Echa1 From | 5e-13 | ||
| 3qk8_A | 272 | Crystal Structure Of Enoyl-Coa Hydratase Echa15 Fro | 1e-12 | ||
| 3oc7_A | 267 | Crystal Structure Of An Enoyl-Coa Hydratase From My | 5e-12 | ||
| 3t8a_A | 334 | Crystal Structure Of Mycobacterium Tuberculosis Men | 6e-12 | ||
| 1q51_A | 314 | Crystal Structure Of Mycobacterium Tuberculosis Men | 6e-12 | ||
| 1rjm_A | 339 | Crystal Structure Of Menb (rv0548c) From Mycobacter | 6e-12 | ||
| 3i47_A | 268 | Crystal Structure Of Putative Enoyl Coa HydrataseIS | 9e-12 | ||
| 2vx2_A | 287 | Crystal Structure Of Human Enoyl Coenzyme A Hydrata | 1e-11 | ||
| 1xx4_A | 261 | Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Co | 2e-11 | ||
| 4fzw_C | 274 | Crystal Structure Of The Paaf-paag Hydratase-isomer | 3e-11 | ||
| 1sg4_A | 260 | Crystal Structure Of Human Mitochondrial Delta3-del | 3e-11 | ||
| 3fdu_A | 266 | Crystal Structure Of A Putative Enoyl-Coa Hydratase | 4e-11 | ||
| 3lao_A | 258 | Crystal Structure Of Enoyl-Coa Hydratase From Pseud | 7e-11 | ||
| 3isa_A | 254 | Crystal Structure Of Putative Enoyl-Coa HydrataseIS | 3e-10 | ||
| 2ej5_A | 257 | Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydr | 4e-10 | ||
| 3l3s_A | 263 | Crystal Structure Of An Enoyl-Coa HydrotaseISOMERAS | 5e-10 | ||
| 3gkb_A | 287 | Crystal Structure Of A Putative Enoyl-coa Hydratase | 7e-10 | ||
| 3qre_A | 298 | Crystal Structure Of An Enoyl-Coa Hydratase Echa12_ | 2e-09 | ||
| 3qmj_A | 256 | Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 Fr | 3e-09 | ||
| 4j2u_A | 365 | Crystal Structure Of An Enoyl-coa Hydratase From Rh | 6e-09 | ||
| 2f6q_A | 280 | The Crystal Structure Of Human Peroxisomal Delta3, | 6e-09 | ||
| 4hdt_A | 353 | Crystal Structure Of A Carnitinyl-Coa Dehydratase F | 6e-09 | ||
| 2pg8_A | 417 | Crystal Structure Of R254k Mutanat Of Dpgc With Bou | 1e-08 | ||
| 2np9_A | 440 | Crystal Structure Of A Dioxygenase In The Crotonase | 1e-08 | ||
| 3h0u_A | 289 | Crystal Structure Of A Putative Enoyl-Coa Hydratase | 1e-08 | ||
| 3g64_A | 279 | Crystal Structure Of Putative Enoyl-Coa Hydratase F | 2e-08 | ||
| 3bpt_A | 363 | Crystal Structure Of Human Beta-Hydroxyisobutyryl-C | 2e-08 | ||
| 2fbm_A | 291 | Acetyltransferase Domain Of Cdy1 Length = 291 | 6e-08 | ||
| 3tlf_A | 274 | Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS | 7e-08 | ||
| 3q1t_A | 278 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 9e-08 | ||
| 2gtr_A | 261 | Human Chromodomain Y-Like Protein Length = 261 | 1e-07 | ||
| 3m6m_A | 305 | Crystal Structure Of Rpff Complexed With Rec Domain | 1e-07 | ||
| 2fw2_A | 260 | Catalytic Domain Of Cdy Length = 260 | 7e-07 | ||
| 3rrv_A | 276 | Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS | 6e-06 | ||
| 3hp0_A | 267 | Crystal Structure Of A Putative Polyketide Biosynth | 9e-06 | ||
| 2w3p_A | 556 | Boxc Crystal Structure Length = 556 | 1e-05 | ||
| 3njb_A | 333 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 4e-04 |
| >pdb|1HZD|A Chain A, Crystal Structure Of Human Auh Protein, An Rna-Binding Homologue Of Enoyl-Coa Hydratase Length = 272 | Back alignment and structure |
|
| >pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265 | Back alignment and structure |
|
| >pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258 | Back alignment and structure |
|
| >pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278 | Back alignment and structure |
|
| >pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258 | Back alignment and structure |
|
| >pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257 | Back alignment and structure |
|
| >pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258 | Back alignment and structure |
|
| >pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261 | Back alignment and structure |
|
| >pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258 | Back alignment and structure |
|
| >pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260 | Back alignment and structure |
|
| >pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286 | Back alignment and structure |
|
| >pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263 | Back alignment and structure |
|
| >pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273 | Back alignment and structure |
|
| >pdb|3T88|A Chain A, Crystal Structure Of Escherichia Coli Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 289 | Back alignment and structure |
|
| >pdb|4ELS|A Chain A, Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Coenzyme A Synthases (Menb) In Complex With Bicarbonate Length = 285 | Back alignment and structure |
|
| >pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270 | Back alignment and structure |
|
| >pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253 | Back alignment and structure |
|
| >pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278 | Back alignment and structure |
|
| >pdb|2UZF|A Chain A, Crystal Structure Of Staphylococcus Aureus 1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In Complex With Acetoacetyl Coa Length = 273 | Back alignment and structure |
|
| >pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261 | Back alignment and structure |
|
| >pdb|3H02|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of Naphthoate Synthase From Salmonella Typhimurium. Length = 288 | Back alignment and structure |
|
| >pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715 | Back alignment and structure |
|
| >pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265 | Back alignment and structure |
|
| >pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272 | Back alignment and structure |
|
| >pdb|2PPY|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From Geobacillus Kaustophilus Hta426 Length = 265 | Back alignment and structure |
|
| >pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253 | Back alignment and structure |
|
| >pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267 | Back alignment and structure |
|
| >pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267 | Back alignment and structure |
|
| >pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From Mycobacterium Marinum Length = 261 | Back alignment and structure |
|
| >pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256 | Back alignment and structure |
|
| >pdb|4EML|A Chain A, Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoyl-Coenzyme A Synthase (Menb) In Complex With Bicarbonate Length = 275 | Back alignment and structure |
|
| >pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase Length = 275 | Back alignment and structure |
|
| >pdb|4DI1|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From Mycobacterium Marinum Length = 277 | Back alignment and structure |
|
| >pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Rhodopseudomonas Palustris Cga009 Length = 275 | Back alignment and structure |
|
| >pdb|1EF8|A Chain A, Crystal Structure Of Methylmalonyl Coa Decarboxylase Length = 261 | Back alignment and structure |
|
| >pdb|3R9Q|A Chain A, Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 262 | Back alignment and structure |
|
| >pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742 | Back alignment and structure |
|
| >pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727 | Back alignment and structure |
|
| >pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256 | Back alignment and structure |
|
| >pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Halodurans Length = 263 | Back alignment and structure |
|
| >pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742 | Back alignment and structure |
|
| >pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290 | Back alignment and structure |
|
| >pdb|3MYB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Mycobacterium Smegm Length = 286 | Back alignment and structure |
|
| >pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5, Delta2,4-Dienoyl Coa Isomerase Length = 296 | Back alignment and structure |
|
| >pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269 | Back alignment and structure |
|
| >pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269 | Back alignment and structure |
|
| >pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265 | Back alignment and structure |
|
| >pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269 | Back alignment and structure |
|
| >pdb|2J5I|I Chain I, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276 | Back alignment and structure |
|
| >pdb|2J5I|B Chain B, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276 | Back alignment and structure |
|
| >pdb|3OME|A Chain A, Crystal Structure Of A Probable Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 282 | Back alignment and structure |
|
| >pdb|2J5I|A Chain A, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276 | Back alignment and structure |
|
| >pdb|2VSU|C Chain C, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 275 | Back alignment and structure |
|
| >pdb|2VSS|E Chain E, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276 | Back alignment and structure |
|
| >pdb|2VSU|A Chain A, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism. Length = 276 | Back alignment and structure |
|
| >pdb|2VSS|F Chain F, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276 | Back alignment and structure |
|
| >pdb|2VSU|E Chain E, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276 | Back alignment and structure |
|
| >pdb|2VSU|F Chain F, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276 | Back alignment and structure |
|
| >pdb|3HE2|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 264 | Back alignment and structure |
|
| >pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254 | Back alignment and structure |
|
| >pdb|3T3W|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycobacterium Thermoresistibile Length = 279 | Back alignment and structure |
|
| >pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255 | Back alignment and structure |
|
| >pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725 | Back alignment and structure |
|
| >pdb|3SWX|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265 | Back alignment and structure |
|
| >pdb|3QXI|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa1 From Mycobacterium Marinum Length = 265 | Back alignment and structure |
|
| >pdb|3QK8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From Mycobacterium Marinum In Complex With An Unknown Ligand Length = 272 | Back alignment and structure |
|
| >pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Avium Length = 267 | Back alignment and structure |
|
| >pdb|3T8A|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 334 | Back alignment and structure |
|
| >pdb|1Q51|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Menb In Complex With Acetoacetyl-Coenzyme A, A Key Enzyme In Vitamin K2 Biosynthesis Length = 314 | Back alignment and structure |
|
| >pdb|1RJM|A Chain A, Crystal Structure Of Menb (rv0548c) From Mycobacterium Tuberculosis Length = 339 | Back alignment and structure |
|
| >pdb|3I47|A Chain A, Crystal Structure Of Putative Enoyl Coa HydrataseISOMERASE (Crotonase) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 Length = 268 | Back alignment and structure |
|
| >pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase Domain-Containing Protein 3 (Echdc3) Length = 287 | Back alignment and structure |
|
| >pdb|1XX4|A Chain A, Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Coa Length = 261 | Back alignment and structure |
|
| >pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274 | Back alignment and structure |
|
| >pdb|1SG4|A Chain A, Crystal Structure Of Human Mitochondrial Delta3-delta2- Enoyl-coa Isomerase Length = 260 | Back alignment and structure |
|
| >pdb|3FDU|A Chain A, Crystal Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Acinetobacter Baumannii Length = 266 | Back alignment and structure |
|
| >pdb|3LAO|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Pseudomonas Aeruginosa Pa01 Length = 258 | Back alignment and structure |
|
| >pdb|3ISA|A Chain A, Crystal Structure Of Putative Enoyl-Coa HydrataseISOMERASE FROM Bordetella Parapertussis Length = 254 | Back alignment and structure |
|
| >pdb|2EJ5|A Chain A, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase Subunit Ii) From Geobacillus Kaustophilus Length = 257 | Back alignment and structure |
|
| >pdb|3L3S|A Chain A, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE FAMILY Protein From Silicibacter Pomeroyi Length = 263 | Back alignment and structure |
|
| >pdb|3GKB|A Chain A, Crystal Structure Of A Putative Enoyl-coa Hydratase From Streptomyces Avermitilis Length = 287 | Back alignment and structure |
|
| >pdb|3QRE|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase Echa12_1 From Mycobacterium Marinum Length = 298 | Back alignment and structure |
|
| >pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From Mycobacterium Marinum Length = 256 | Back alignment and structure |
|
| >pdb|4J2U|A Chain A, Crystal Structure Of An Enoyl-coa Hydratase From Rhodobacter Sphaeroides 2.4.1 Length = 365 | Back alignment and structure |
|
| >pdb|2F6Q|A Chain A, The Crystal Structure Of Human Peroxisomal Delta3, Delta2 Enoyl Coa Isomerase (Peci) Length = 280 | Back alignment and structure |
|
| >pdb|4HDT|A Chain A, Crystal Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Thermoresistibile Length = 353 | Back alignment and structure |
|
| >pdb|2PG8|A Chain A, Crystal Structure Of R254k Mutanat Of Dpgc With Bound Substrate Analog Length = 417 | Back alignment and structure |
|
| >pdb|2NP9|A Chain A, Crystal Structure Of A Dioxygenase In The Crotonase Superfamily Length = 440 | Back alignment and structure |
|
| >pdb|3H0U|A Chain A, Crystal Structure Of A Putative Enoyl-Coa Hydratase From Streptomyces Avermitilis Length = 289 | Back alignment and structure |
|
| >pdb|3G64|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Streptomyces Coelicolor A3(2) Length = 279 | Back alignment and structure |
|
| >pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363 | Back alignment and structure |
|
| >pdb|2FBM|A Chain A, Acetyltransferase Domain Of Cdy1 Length = 291 | Back alignment and structure |
|
| >pdb|3TLF|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 274 | Back alignment and structure |
|
| >pdb|3Q1T|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Avium Length = 278 | Back alignment and structure |
|
| >pdb|2GTR|A Chain A, Human Chromodomain Y-Like Protein Length = 261 | Back alignment and structure |
|
| >pdb|3M6M|A Chain A, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc Length = 305 | Back alignment and structure |
|
| >pdb|2FW2|A Chain A, Catalytic Domain Of Cdy Length = 260 | Back alignment and structure |
|
| >pdb|3RRV|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 276 | Back alignment and structure |
|
| >pdb|3HP0|A Chain A, Crystal Structure Of A Putative Polyketide Biosynthesis Enoyl-Coa Hydratase (Pksh) From Bacillus Subtilis Length = 267 | Back alignment and structure |
|
| >pdb|2W3P|A Chain A, Boxc Crystal Structure Length = 556 | Back alignment and structure |
|
| >pdb|3NJB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis, Iodide Soak Length = 333 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272 | Back alignment and structure |
|---|
Score = 304 bits (781), Expect = e-104
Identities = 125/306 (40%), Positives = 185/306 (60%), Gaps = 36/306 (11%)
Query: 28 SKEGRKLTQIIYHNSPE-RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCV 86
S E + ++ + E GIV L +NR +N+L+ L++ + AV+A++ D++VR +
Sbjct: 1 SSEMKTEDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTI 60
Query: 87 LLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGG 146
++RS V +FCAGADLK R ++ ++ FVS +R + + ++PVP +A +DG A GGG
Sbjct: 61 IIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGG 120
Query: 147 LEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTE 206
LE+ALACDIRVAAS+ +MGLVETKLAIIPG GGTQRLPR +G+ LAKELI++ R++D E
Sbjct: 121 LELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKE 180
Query: 207 AKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQS 266
AK++GL++ + QN +AAY +L +A + GP+A+R+AK +I+
Sbjct: 181 AKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAIN------------- 227
Query: 267 THSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKY 326
+G E G+ E CY + I T+DR+EGL +F K
Sbjct: 228 -----------QGMEVDLVT-----------GLAIEEACYAQTIPTKDRLEGLLAFKEKR 265
Query: 327 KPVYKG 332
P YKG
Sbjct: 266 PPRYKG 271
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265 | Back alignment and structure |
|---|
Score = 289 bits (741), Expect = 1e-97
Identities = 116/287 (40%), Positives = 163/287 (56%), Gaps = 39/287 (13%)
Query: 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
P +V++ +NR + N+L+ L+EE+ + I + R V+L + FCAGADLK R
Sbjct: 17 PHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKER 76
Query: 106 LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
+NE+Q+R VS +R +E +P PV+A ++G A GGG E++LACD R+AA + +G
Sbjct: 77 AGMNEEQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLG 136
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNA 225
L ET LAIIPGAGGTQRLPR++G+ AKELIYTGR + + EAK GLV + P +
Sbjct: 137 LTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYGLVEFVVP----VHL 192
Query: 226 AYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGT 285
++ IAE IA NGPIAVR+AK +I G +
Sbjct: 193 LEEKAIEIAEKIASNGPIAVRLAKEAIS------------------------NGIQVDLH 228
Query: 286 ENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
G++ E Y+ VI T+DR+EGL++F K P+YKG
Sbjct: 229 T-----------GLQMEKQAYEGVIHTKDRLEGLQAFKEKRTPMYKG 264
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265 | Back alignment and structure |
|---|
Score = 257 bits (658), Expect = 3e-85
Identities = 80/290 (27%), Positives = 128/290 (44%), Gaps = 41/290 (14%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
GI E+ ++ ++ N+ + +E A++ IR D +++ V++ S V F AGAD+
Sbjct: 16 EDGIAEIHLHINKS-NSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINF 74
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VR 163
+ + F ++ P +A L+G GGGLEMALACD+R +
Sbjct: 75 LRSADPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGK 134
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
+GL E L ++ G GGTQRL R++G A ++ TG + EA IGLVN + PQ +
Sbjct: 135 IGLPEVSLGVLAGTGGTQRLARLIGYSRALDMNITGETITPQEALEIGLVNRVFPQAETR 194
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283
A +A++ AV K +I G E
Sbjct: 195 ERT----REYARKLANSATYAVSNIKLAIM------------------------NGKEM- 225
Query: 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333
+ +EG + + R++D EGL +FL K +P +KG+
Sbjct: 226 ----------PLNVAIRYEGELQNLLFRSEDAKEGLSAFLEKRQPNWKGI 265
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277 | Back alignment and structure |
|---|
Score = 242 bits (619), Expect = 3e-79
Identities = 73/288 (25%), Positives = 117/288 (40%), Gaps = 41/288 (14%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
G+ L ++RP NA+ + EI+ A + + +++ V+L + +F AG D+
Sbjct: 31 DQGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHE-IFSAGDDMPE 88
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
TLN + + + +IP P +A + G A G GL +ALA D RV+ NV+
Sbjct: 89 LRTLNAPEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKF 148
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
G E +IPG GG RL R+VG AKEL+++GR D+ EA ++GL++ + + +
Sbjct: 149 GATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAPDDVYD 208
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
+A + A P A+ AK I+ E +
Sbjct: 209 SA----VAWARRYLECPPRALAAAKAVIN------------------------DVFELEA 240
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
TE E Y + R + G G
Sbjct: 241 TE-----------RAAAERRRYVELFAAGQRGPDGRGPGGGNTGDQDG 277
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275 | Back alignment and structure |
|---|
Score = 241 bits (617), Expect = 6e-79
Identities = 64/288 (22%), Positives = 113/288 (39%), Gaps = 42/288 (14%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
++ + +NRP+ RNALN L+ + + I +++R V++ + D F AG DL
Sbjct: 23 VGPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHG-IGDHFSAGLDLSE 79
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
+ + T + +++ VPV+A L G+ GGGLE+A A IRVA ++
Sbjct: 80 LRERDATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYY 139
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
L E I G GG+ RLPR++G+ +++ TGR+ + E G L +
Sbjct: 140 ALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAEGVVHGFSQYLIENGSAYD 199
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
A L + +A N P+ +++ E+
Sbjct: 200 KA----LELGNRVAQNAPLTNFAVLQALP------------------------MIAEANP 231
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
G+ E + Q+ +++FL +
Sbjct: 232 QT-----------GLLMESLMATVAQSDQEAKTRIRAFLDHKTAKVRE 268
|
| >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258 | Back alignment and structure |
|---|
Score = 239 bits (612), Expect = 2e-78
Identities = 80/288 (27%), Positives = 140/288 (48%), Gaps = 42/288 (14%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ + + RP NAL+ +V EI+ AVEA +E+VR ++L + F AGAD++
Sbjct: 12 EGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGR-AFAAGADIQE 70
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
+ ++ + +L + P++A ++G A GGG E+AL+CD+ VA+S
Sbjct: 71 MAKDDPIRLEWL-NQFADWD-RLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEF 128
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
G E L ++PGAGGTQRL +++G A E ++TG + + EA+ +G+VN +
Sbjct: 129 GFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSPELLME 188
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
+R+A +A P+A+R+ K ++ K +
Sbjct: 189 ET----MRLAGRLAEQPPLALRLIKEAVQ------------------------KAVDYPL 220
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
E GM++E + + ++D+ EG+ +FL K KP ++G
Sbjct: 221 YE-----------GMQFERKNFYLLFASEDQKEGMAAFLEKRKPRFQG 257
|
| >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261 | Back alignment and structure |
|---|
Score = 237 bits (608), Expect = 8e-78
Identities = 63/289 (21%), Positives = 122/289 (42%), Gaps = 40/289 (13%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKD-VFCAGADLK 103
+ + N + NAL+ +++++ A+ + E +RC++LR+ VF AG D+
Sbjct: 11 INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIH 69
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
+ D S+ LR +T ++ P P++++++GS +GG EM ++ D+ +AAS
Sbjct: 70 ELPSGGRDP-LSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTST 128
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
+ L + G L R G + KELI+T + + A ++G++N + +
Sbjct: 129 FSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELE 188
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283
+ L++A I+ P+A+ + K + + +
Sbjct: 189 DFT----LQMAHHISEKAPLAIAVIKEELR-----------VLGEAHTMNSD-------- 225
Query: 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
E YD ++D EG+ +FL K KP + G
Sbjct: 226 EFERIQGMR----------RAVYD----SEDYQEGMNAFLEKRKPNFVG 260
|
| >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260 | Back alignment and structure |
|---|
Score = 236 bits (605), Expect = 3e-77
Identities = 57/287 (19%), Positives = 106/287 (36%), Gaps = 42/287 (14%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
G+ + P N+L+ + E++ ++E + D+ R V+L S VF AG DL
Sbjct: 11 AGAGVAVMKFKNPPV-NSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLT 69
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
+ + ++ + +L + +++ ++G+ GG +AL CD R+ A N R
Sbjct: 70 EMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPR 129
Query: 164 --MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNP 221
+GL ET+L II L +G A+ + G L EA +G+V+ + P+
Sbjct: 130 YCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQ 189
Query: 222 NQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281
Q+ A L A ++ K +
Sbjct: 190 VQSTA----LSAIAQWMAIPDHARQLTKAMMR---------------------------- 217
Query: 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKP 328
K T + + + + I + L+ +L + K
Sbjct: 218 -KATA------SRLVTQRDADVQNFVSFISKDSIQKSLQMYLERLKE 257
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287 | Back alignment and structure |
|---|
Score = 236 bits (604), Expect = 8e-77
Identities = 63/294 (21%), Positives = 102/294 (34%), Gaps = 49/294 (16%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
G+ + ++ P N + AT++ E+ T + + D VR ++ S + F A D++
Sbjct: 16 EHGVARIILDNP-PVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRI 74
Query: 105 RLTLNEDQIRSFVSTLRYMTCQ-----LESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
++ Q + + Q + P + L G A GGG E A D+ AA
Sbjct: 75 GEKMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAA 134
Query: 160 S-NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218
+ +G +E + IIPG GGTQ L VG A E++ T L D+ A S G +N P
Sbjct: 135 AETAGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRALP 194
Query: 219 QNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSK 278
+ R+A +IA + AKRS+
Sbjct: 195 ADELDEYV----DRVARNIAALPDGVIEAAKRSLP---ADDL------------------ 229
Query: 279 GGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
G+ E + + + L G
Sbjct: 230 -----------------KEGLLGENDAWAATFSLPAAQQLISGGLKDGAQTPAG 266
|
| >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260 | Back alignment and structure |
|---|
Score = 233 bits (597), Expect = 4e-76
Identities = 94/296 (31%), Positives = 131/296 (44%), Gaps = 42/296 (14%)
Query: 37 IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVF 96
II + + + +NRP+A NAL L+EE+ A+E D V ++L K F
Sbjct: 6 IITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEK-AF 64
Query: 97 CAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIR 156
AGAD+K S L + + I PV+A ++G A GGG E+A+ CDI
Sbjct: 65 AAGADIKEMQNRTFQDCYSG-KFLSHWD-HITRIKKPVIAAVNGYALGGGCELAMMCDII 122
Query: 157 VAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTL 216
A + G E L IPGAGGTQRL R VG LA E++ TG + + +AK GLV+ +
Sbjct: 123 YAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKI 182
Query: 217 TPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQG 276
P A ++ AE IA+N I V MAK S++
Sbjct: 183 FPVETLVEEA----IQCAEKIANNSKIIVAMAKESVN----------------------- 215
Query: 277 SKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
E TE G + E + T DR EG+ +F+ K K +K
Sbjct: 216 -AAFEMTLTE-----------GNKLEKKLFYSTFATDDRREGMSAFVEKRKANFKD 259
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261 | Back alignment and structure |
|---|
Score = 233 bits (597), Expect = 5e-76
Identities = 76/289 (26%), Positives = 126/289 (43%), Gaps = 42/289 (14%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
I +N A NA+++ ++ ++ ++ + D+ +R V++ + F AGAD+K
Sbjct: 13 EDHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGR-FFSAGADIKE 70
Query: 105 RLTLNE-DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
++ E Q + ++E PV+A + G+A GGGLE A++C +R A + +
Sbjct: 71 FTSVTEAKQATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAK 130
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
+GL E L +IPG GTQRLPR VG A E++ T + EA GLVN + +
Sbjct: 131 LGLPELTLGLIPGFAGTQRLPRYVGKAKACEMMLTSTPITGAEALKWGLVNGVFAEETFL 190
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283
+ L++A+ IA P R + S
Sbjct: 191 DDT----LKVAKQIAGKSPATARAVLELLQ------------------------TTKSSH 222
Query: 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
E G++ E + V ++D EG+ +FL K KP + G
Sbjct: 223 YYE-----------GVQREAQIFGEVFTSEDGREGVAAFLEKRKPSFSG 260
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263 | Back alignment and structure |
|---|
Score = 232 bits (595), Expect = 7e-76
Identities = 87/289 (30%), Positives = 130/289 (44%), Gaps = 42/289 (14%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
G+ + ++RP A NALN TL E+L A D E+ +++ + F AGAD+
Sbjct: 16 PVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSER-AFAAGADIA 74
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
+TL Q R + L L + P++A + G A GGG E+A+ CD+ +AA R
Sbjct: 75 EMVTLTPHQARER-NLLSGWD-SLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTAR 132
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
G E L I+PG GGTQRL R VG A +L TGR + + EA+ +GLV+ + P
Sbjct: 133 FGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVPAADLL 192
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283
+ A L +A+ IA A R K +I+ + E
Sbjct: 193 DEA----LAVAQRIARMSRPAGRAVKDAIN------------------------EAFERP 224
Query: 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+ GM +E + + T D+ EG+ +FL K P +
Sbjct: 225 LSA-----------GMRYERDAFYAMFDTHDQTEGMTAFLEKRTPEFTD 262
|
| >3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 233 bits (596), Expect = 8e-76
Identities = 76/293 (25%), Positives = 116/293 (39%), Gaps = 49/293 (16%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
+V L MNRP RNAL+ +V + A + I D+ +R +L + +C G
Sbjct: 16 DGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSA-----YCVGG 70
Query: 101 DLKHRLTLNEDQIRSFVSTLRYMT-CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
DL + + ++ P++A ++G+ GGG EM DIRV+
Sbjct: 71 DLSDGWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSD 130
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219
+ GL E + ++PGAG RL R + A E+I TG + + EA GLV + P
Sbjct: 131 EHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGLVGHVVPA 190
Query: 220 NPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKG 279
+ A +A+ I NGP+AVR AK +I +
Sbjct: 191 GTALDKA----RSLADRIVRNGPLAVRNAKEAIV------------------------RS 222
Query: 280 GESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
G + E VI + D EGL +F K + + G
Sbjct: 223 GWLAEED-----------ARAIEARLTRPVITSADAREGLAAFKEKREARFTG 264
|
| >3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 231 bits (591), Expect = 3e-75
Identities = 62/293 (21%), Positives = 106/293 (36%), Gaps = 49/293 (16%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
++ + +NRP RNA + T++EE+ A+ D ++R +L F AG
Sbjct: 16 DGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPL-----FTAGL 70
Query: 101 DLKHRLTLNEDQIRSFVS-TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
DL + + + P+L + G G+E+ALA DI +A
Sbjct: 71 DLASVAAEIQGGASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIAD 130
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219
+E I P G T R PR G A + T D+ EA IG+V + P
Sbjct: 131 ETATFAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGIVQEIVPV 190
Query: 220 NPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKG 279
+ + A + IA+ IA P+ V+ R+ +
Sbjct: 191 GEHVDTA----IAIAQTIARQAPLGVQATLRNAR---------------------LAVRE 225
Query: 280 GESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
G++ E + + ++D G+++FL + + G
Sbjct: 226 GDAAAEEQLVPTVR--------------ELFTSEDATLGVQAFLSRTTAEFVG 264
|
| >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264 | Back alignment and structure |
|---|
Score = 230 bits (588), Expect = 8e-75
Identities = 63/288 (21%), Positives = 114/288 (39%), Gaps = 52/288 (18%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
++ + + RP+ RNALN+ LVEE+ A+ GD R ++L FCAGADL
Sbjct: 28 AEAVLTIELQRPERRNALNSQLVEELTQAIRKA-GDGSARAIVLTGQGT-AFCAGADLSG 85
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
+ L + +++ P+PV+ ++G A G GL++A+ CD+RV A +
Sbjct: 86 D-----AFAADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFF 140
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
+K + +RL +VG A+ ++ + + + A G+ N +
Sbjct: 141 QFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGTLA---- 196
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
+ A +IA P+A++ AKR +
Sbjct: 197 ----DAQAWAAEIARLAPLAIQHAKRVL-------------------------------- 220
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
N + +D+ +QD +E + + K P ++G
Sbjct: 221 ----NDD-GAIEEAWPAHKELFDKAWGSQDVIEAQVARMEKRPPKFQG 263
|
| >3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267 | Back alignment and structure |
|---|
Score = 229 bits (587), Expect = 1e-74
Identities = 79/288 (27%), Positives = 125/288 (43%), Gaps = 37/288 (12%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R ++ + +NRP+ARNA+NA + + A+E + D EVR V+L FCAGADLK
Sbjct: 16 RGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKA 75
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
+ I P +A ++G+A GGG E+ALA D+ VA +
Sbjct: 76 IARRENLYHPDH-PEWGFAGYVRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQF 134
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
GL E K +I AGG R+ + +A L+ TG + + A+ GL+N + +
Sbjct: 135 GLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVVEAGSVLD 194
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
AA L +A I N P++V+ +KR G G D
Sbjct: 195 AA----LALASAITVNAPLSVQASKRIAYGVDDGVVVGDEP------------------- 231
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
G + +++++D EG ++F K +PV++
Sbjct: 232 -------------GWDRTMREMRALLKSEDAKEGPRAFAEKREPVWQA 266
|
| >3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263 | Back alignment and structure |
|---|
Score = 229 bits (586), Expect = 2e-74
Identities = 56/290 (19%), Positives = 109/290 (37%), Gaps = 46/290 (15%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
+ + ++ P+ +N L+A L +L A+ A + + ++L+S + F +G L+ L
Sbjct: 13 DALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLL 72
Query: 107 TLNEDQ----IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
DQ +R + L + ++ + P +A+++G AYGGG M LACD R+A
Sbjct: 73 ICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRA 132
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPN 222
+ K+ I P G + LPRI+G L+ G+L S EA +GL+ +
Sbjct: 133 KFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGLIQEICEN--- 189
Query: 223 QNAAYL--ASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGG 280
L + ++ A+ K+ +
Sbjct: 190 --KQELQERVKNYLKAVSEGYVPAIAATKKLLK--------------------------- 220
Query: 281 ESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVY 330
+E E + + + + L++ + + +
Sbjct: 221 --GKAAE------ELKQQLEQETEELVALFKQTEIKKRLEALVEGHHHHH 262
|
| >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276 | Back alignment and structure |
|---|
Score = 229 bits (587), Expect = 2e-74
Identities = 62/312 (19%), Positives = 108/312 (34%), Gaps = 47/312 (15%)
Query: 28 SKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVL 87
S + + GI + +NRP+ RNA++ TL E++ +E + D ++
Sbjct: 2 STYEGRWKTVKVE---IEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLV 58
Query: 88 LRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ-----LESIPVPVLAVLDGSA 142
L + + AG DLK + +R Q L P +A+++G
Sbjct: 59 LTGAGE-AWTAGMDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWC 117
Query: 143 YGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV 202
+GGG +ACD+ + A GL E I PG ++ + VG + I TG+
Sbjct: 118 FGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTF 177
Query: 203 DSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYR 262
+A +GLVN P + + +A ++ P+ +R AK
Sbjct: 178 GGQKAAEMGLVNESVPLAQLREVT----IELARNLLEKNPVVLRAAKHGFK--------- 224
Query: 263 DGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSF 322
+ + + + R +G+K F
Sbjct: 225 --RCRELTWEQNEDYLYAK--------LDQSRLLDT-------------EGGREQGMKQF 261
Query: 323 LGK--YKPVYKG 332
L KP +
Sbjct: 262 LDDKSIKPGLQA 273
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253 | Back alignment and structure |
|---|
Score = 228 bits (583), Expect = 4e-74
Identities = 76/290 (26%), Positives = 125/290 (43%), Gaps = 44/290 (15%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
E+ + + +N P+ RN L+ + +L A++ + D VR V+L K F AGADL
Sbjct: 5 EKGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGK-AFSAGADLA 63
Query: 104 HRLTLNE---DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS 160
+ E ++ +L + ++ + P P +A ++G A GG +ALACD+ V
Sbjct: 64 FLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDE 123
Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQN 220
R+G E K+ + + L R VG AK+L+ TGRLV++ EAK++GLVN + P
Sbjct: 124 EARLGYTEVKIGFVAA-LVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPG 182
Query: 221 PNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGG 280
A +AE++A N P ++R+ K +
Sbjct: 183 KALEEA----KALAEEVAKNAPTSLRLTKELLL------------------------ALP 214
Query: 281 ESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVY 330
+ G + V T D EG+++F K P +
Sbjct: 215 GMGLED-----------GFRLAALANAWVRETGDLAEGIRAFFEKRPPRF 253
|
| >3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289 | Back alignment and structure |
|---|
Score = 229 bits (586), Expect = 5e-74
Identities = 76/297 (25%), Positives = 125/297 (42%), Gaps = 44/297 (14%)
Query: 37 IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVF 96
I Y S + GI ++ +NRPQ RNA V+E++ A+ R D+ + ++L F
Sbjct: 29 IRYEKSTD--GIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAF 86
Query: 97 CAGADLKHRLTLNEDQIRSFVSTLRYMTCQ--LESIPVPVLAVLDGSAYGGGLEMALACD 154
C+G D K R + S V L + Q + + P PV+A++ G + GGG + + CD
Sbjct: 87 CSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCD 146
Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVN 214
+ +AA N G K+ G G + RIVG A+E+ + R D+ +A +GLVN
Sbjct: 147 LTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVN 206
Query: 215 TLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDG 274
T+ P + +R ++ N P+A+R K ++
Sbjct: 207 TVVPLADLEKET----VRWCREMLQNSPMALRCLKAAL---------------------- 240
Query: 275 QGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYK 331
N + G+ E G T++ EG +F K +P +
Sbjct: 241 --------------NADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFS 283
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278 | Back alignment and structure |
|---|
Score = 228 bits (584), Expect = 5e-74
Identities = 83/290 (28%), Positives = 136/290 (46%), Gaps = 46/290 (15%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK- 103
+ + +NRPQA NALN+ ++ E+ +A + D ++ +++ K F AGAD+K
Sbjct: 32 DQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAK-AFAAGADIKE 90
Query: 104 -HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
LT + F +T +L ++ P +A + G A GGG E+A+ CD+ +AA
Sbjct: 91 MADLTFADAFTADFFATWG----KLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTA 146
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPN 222
+ G E KL ++PG GG+QRL R +G A +LI TGR +D+ EA+ GLV+ + P +
Sbjct: 147 KFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDL 206
Query: 223 QNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGES 282
A A I+ A RMAK +++ + ES
Sbjct: 207 LTEA----RATATTISQMSASAARMAKEAVN------------------------RAFES 238
Query: 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+E G+ +E + T+D+ EG+ +F+ K P +
Sbjct: 239 SLSE-----------GLLYERRLFHSAFATEDQSEGMAAFIEKRAPQFTH 277
|
| >3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256 | Back alignment and structure |
|---|
Score = 227 bits (581), Expect = 8e-74
Identities = 68/290 (23%), Positives = 114/290 (39%), Gaps = 52/290 (17%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ L +NRPQ+RNAL+A L A+ + D++V V++ VFCAG DLK
Sbjct: 16 TDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADP-VFCAGLDLKE 74
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
E ++ + + PV+ ++G+A GGLE+AL CDI +A+ N +
Sbjct: 75 LGDTTELP---------DISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKF 125
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
++ ++P G + RLP+ VG+ LA+ + TG + + +A GLV + +
Sbjct: 126 ADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGLVTEVVAHDDLLT 185
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
AA R+A I N AVR S + +
Sbjct: 186 AA----RRVAASIVGNNQKAVRALLDSYH------------------------RIDALQT 217
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIR---TQDRVEGLKSFLGKYKPVYK 331
+ E + +R D S + + + +
Sbjct: 218 GG-----------ALWAEAEAARQWMRSTSGDDIAASRASVIERGRSQVR 256
|
| >2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273 | Back alignment and structure |
|---|
Score = 227 bits (581), Expect = 1e-73
Identities = 74/297 (24%), Positives = 116/297 (39%), Gaps = 46/297 (15%)
Query: 37 IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVF 96
I Y GI ++ +NRP+ RNA V E++ A R D+ V ++L F
Sbjct: 15 IKYE---FYEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAF 71
Query: 97 CAGADLKHRLTLNEDQIRSFVSTLRYMTCQ--LESIPVPVLAVLDGSAYGGGLEMALACD 154
C+G D K R L + Q + IP PV+A++ G A GGG + + CD
Sbjct: 72 CSGGDQKKRGHGGYVGEDQI-PRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCD 130
Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVN 214
+ +AA N G K+ G+ L RIVG A+E+ Y R ++ EA +GLVN
Sbjct: 131 LTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVN 190
Query: 215 TLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDG 274
T+ P ++ ++ ++I + P A+R K ++
Sbjct: 191 TVVPLEKVEDET----VQWCKEIMKHSPTALRFLKAAM---------------------- 224
Query: 275 QGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYK 331
N + G + G T + EG +F K P +
Sbjct: 225 --------------NADTDGLAGLQQMAGDATLLYYTTDEAKEGRDAFKEKRDPDFD 267
|
| >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289 | Back alignment and structure |
|---|
Score = 226 bits (578), Expect = 6e-73
Identities = 53/285 (18%), Positives = 94/285 (32%), Gaps = 45/285 (15%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
++ N P N + +V +++ +E + R V+ S D F D+
Sbjct: 15 DGTVLSATFNAP-PMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTK 73
Query: 105 RLTLNEDQIRSFVSTLRYMTC---QLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS- 160
+ ++ + +L +P +A L G A G G E LACD+R A+
Sbjct: 74 VPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRE 133
Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQN 220
N +G E + PGAG Q L R++G A E + T D+ A+ G VN P
Sbjct: 134 NAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLAERYGWVNRAVPDA 193
Query: 221 PNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGG 280
IA ++ A+ AK +I+
Sbjct: 194 ELDEFV----AGIAARMSGFPRDALIAAKSAIN-------------------------AI 224
Query: 281 ESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGK 325
+ + + +++R + + +
Sbjct: 225 SLPAPA-----------EVRADAALFQQLVRGEKVQQRTAELFKQ 258
|
| >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275 | Back alignment and structure |
|---|
Score = 225 bits (577), Expect = 7e-73
Identities = 64/296 (21%), Positives = 126/296 (42%), Gaps = 51/296 (17%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ ++ + +NRP+ RNA+N E++ + I D + R V++ K +F +G DL
Sbjct: 11 QKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGK-MFTSGIDLMD 69
Query: 105 RLTL-----------NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALAC 153
+ +R +S + +E P PV+A + G GGG+++ AC
Sbjct: 70 MASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISAC 129
Query: 154 DIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIP-LAKELIYTGRLVDSTEAKSIGL 212
DIR + + E + + G QRLP+++G L EL +T R + + EA GL
Sbjct: 130 DIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGL 189
Query: 213 VNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGR 272
V+ + P+++ A+ +A DI+ P+AV+ +K ++
Sbjct: 190 VSRVF---PDKDVMLNAAFALAADISSKSPVAVQGSKINLI------------------- 227
Query: 273 DGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKP 328
++ E +++ +++TQD ++ +++ + K
Sbjct: 228 ----------YSRDHSVDE------SLDYMATWNMSMLQTQDIIKSVQAAMEKKDS 267
|
| >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243 | Back alignment and structure |
|---|
Score = 224 bits (574), Expect = 7e-73
Identities = 43/278 (15%), Positives = 95/278 (34%), Gaps = 45/278 (16%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
G+V++ M +RN + ++VE + + +++ + V+L F +GA +
Sbjct: 10 GNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGN-YFSSGASKEF 68
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
+ ++ + +P++A + G ++GGGL + L D V +
Sbjct: 69 LIRKTRGEVEVL----DLSG-LILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVY 123
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
K P + L +G LA+E+IYTG E G+ + + N
Sbjct: 124 ATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGKELAERGIPFPVVSRQDVLN 183
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
A ++ + IA + +++ K+ + ++K
Sbjct: 184 YA----QQLGQKIAKSPRLSLVALKQHLS------------------------ADIKAKF 215
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSF 322
E ++ E + + ++
Sbjct: 216 PE-----------AIKKELEIHQVTFNQPEIASRIQQE 242
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250 | Back alignment and structure |
|---|
Score = 224 bits (573), Expect = 1e-72
Identities = 54/282 (19%), Positives = 98/282 (34%), Gaps = 41/282 (14%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ + ++ P N + TL + A+ D+ VR V++ + F AG D
Sbjct: 7 SDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNE 66
Query: 105 RLTLN-EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
L+ + I ++ + + + ++ P +A +DG A G G + AL D R+ AS
Sbjct: 67 VKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTAN 126
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
+ E K I G L G +E+IY + +D+ LVN + +
Sbjct: 127 FVMPELKHGIGCSVGAAI-LGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALL 185
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283
+AA + A +A A KR+++ K
Sbjct: 186 DAA----ITQAHVMASYPASAFINTKRAVN------------------------KPFIHL 217
Query: 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGK 325
+ + + + +D K+ LGK
Sbjct: 218 LEQ-----------TRDASKAVHKAAFQARDAQGHFKNVLGK 248
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278 | Back alignment and structure |
|---|
Score = 224 bits (574), Expect = 2e-72
Identities = 79/295 (26%), Positives = 126/295 (42%), Gaps = 51/295 (17%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
R + + MNRP RNAL+ +++ ++ A + + D ++RC +L FCAG
Sbjct: 27 RGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGY-----FCAGM 81
Query: 101 DLKHRLTLNEDQI---RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRV 157
DLK S+ + + + P++A ++G A GG E+ DIRV
Sbjct: 82 DLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRV 141
Query: 158 AASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLT 217
AA + + G+ E K ++ P G RL R + +A +L+ TGR + + EAK +GLV +
Sbjct: 142 AAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMGLVGHVV 201
Query: 218 PQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGS 277
P A L IAE IA NGP+AV+ R+I R+ + H
Sbjct: 202 PDGQALTKA----LEIAEIIAANGPLAVQAILRTI---------RETEGMHEN------- 241
Query: 278 KGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+ + V + D EG ++F K KP ++
Sbjct: 242 -------------------EAFKIDTRIGIEVFLSDDAKEGPQAFAQKRKPNFQN 277
|
| >3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272 | Back alignment and structure |
|---|
Score = 223 bits (572), Expect = 3e-72
Identities = 63/289 (21%), Positives = 107/289 (37%), Gaps = 44/289 (15%)
Query: 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
G++ L ++ P N++ + ++ I D +VR VL+R K F +G +
Sbjct: 22 HGVLNLVLDSP-GLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGK-AFSSGGSFELI 79
Query: 106 --LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
+ + + R + L ++ PV++ + G A G GL +AL DI VA++ +
Sbjct: 80 DETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAK 139
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
+ TKL + G P +VG+ AK + T + EA+ IGLV+T +
Sbjct: 140 IIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCVDDDEVL 199
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283
A R+AE++A A+R KRS+
Sbjct: 200 PTA----TRLAENLAQGAQNAIRWTKRSL------------------------------- 224
Query: 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
N ++ E D EGL + K +
Sbjct: 225 -----NHWYRMFGPTFETSLGLEFLGFTGPDVQEGLAAHRQKRPARFTD 268
|
| >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 3e-72
Identities = 54/288 (18%), Positives = 111/288 (38%), Gaps = 45/288 (15%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
G++ L +NRP+A+NAL L I A++ +++VR V+LR F AG D+K +
Sbjct: 14 GVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEH-DFTAGNDMKDFM 72
Query: 107 TLNEDQIRSFVSTLRYMTC--QLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
++ + + P++ + G A G G+ + L D+ A +
Sbjct: 73 GFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALF 132
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
+ L + P G +Q L + G A EL++T + ++ A GLVN +
Sbjct: 133 QIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGLVNEIVED----- 187
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
AY + A+ + +++ K +
Sbjct: 188 -AYATAQATAQHLTALPLASLKQTKALM-------------------------------- 214
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+ ++ E + + +++ + +E +++F+ K +P +
Sbjct: 215 ----KHDLDQIIECIDHEAEIFMQRVQSPEMLEAVQAFMQKRQPDFSQ 258
|
| >3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 4e-72
Identities = 73/288 (25%), Positives = 118/288 (40%), Gaps = 45/288 (15%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R I+ + +NRP+A+N++NA + + A++ + D + +L FCAG DLK
Sbjct: 22 RDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTG-AGGSFCAGMDLKA 80
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
+ R + P++A ++G A GG E+ALA D+ VAA +
Sbjct: 81 FARGENVVVEG-----RGLGFTERPPAKPLIAAVEGYALAGGTELALATDLIVAARDSAF 135
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
G+ E K ++ G GG RLP + +A EL TG + + A ++G+VN L +
Sbjct: 136 GIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLSAERAHALGMVNVLAEPGAALD 195
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
AA + +AE I NGP+AV KR I + +
Sbjct: 196 AA----IALAEKITANGPLAVAATKRII---------TESRGWSLD-------------- 228
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+ + + + D EG +F K P + G
Sbjct: 229 ------------TRFAQQMKILFPIFTSNDAKEGAIAFAEKRPPRWTG 264
|
| >3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 222 bits (568), Expect = 9e-72
Identities = 70/293 (23%), Positives = 115/293 (39%), Gaps = 48/293 (16%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
R G+ L ++ P RN+ L ++ A + + D VR ++L + FC+GA
Sbjct: 14 RDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPA-----FCSGA 68
Query: 101 DLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS 160
+ R+ + + + PV+A ++G A G G+ +AL DIR+ A
Sbjct: 69 QIS-AAAETFAAPRNPDFSASPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAE 127
Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQN 220
R + + + + P A LPR+VG +A EL+ TG + A GL N P
Sbjct: 128 EGRYAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRCLPAG 187
Query: 221 PNQNAAYLASLRIAEDIAHN-GPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKG 279
AA LR+A DIA N P + + KR + + + S
Sbjct: 188 KVLGAA----LRMAHDIATNVAPESAALTKRLL--------WDAQMTGMSAAE------- 228
Query: 280 GESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
E + R++ +QD EG ++F+ P + G
Sbjct: 229 ------------------VAARETADHLRLMGSQDAAEGPRAFIDGRPPRWAG 263
|
| >3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290 | Back alignment and structure |
|---|
Score = 223 bits (570), Expect = 1e-71
Identities = 66/300 (22%), Positives = 109/300 (36%), Gaps = 54/300 (18%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
RP I + +NRP+ NA+ ++ + I D +VR V++ + FC+GA
Sbjct: 31 RPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKG-----FCSGA 85
Query: 101 DLKHRLTLNE-------DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALAC 153
D K + + L + L + PV+A ++G+A GGGL +ALAC
Sbjct: 86 DQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALAC 145
Query: 154 DIRVAASNVRMGLVETKLAIIPG-AGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGL 212
D+RVA+ + + G + LPR +G A +++ TGR VD+ EA+ IGL
Sbjct: 146 DVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERIGL 205
Query: 213 VNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGR 272
V+ I E IA + + KR+I +
Sbjct: 206 VSRKVASESLLEEC----YAIGERIAGFSRPGIELTKRTIW-----------SGLDAASL 250
Query: 273 DGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+ Y + T + E + K ++
Sbjct: 251 ESH-----------MHQEGLGQLYVRL-----------LTDNFEEATAARKEKRPAEFRD 288
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254 | Back alignment and structure |
|---|
Score = 222 bits (567), Expect = 1e-71
Identities = 52/284 (18%), Positives = 91/284 (32%), Gaps = 51/284 (17%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
RP ++RP+ RNAL+A LVE ++ V+A E+V ++ + F AG D
Sbjct: 14 RPAAWTFTLSRPEKRNALSAELVEALIDGVDAA-HREQVPLLVFAGAGR-NFSAGFDFTD 71
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
T +E + + + + ++ P LA+ G +G G+++ AC R
Sbjct: 72 YETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGF 131
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
+ K ++ GT+R IVG A ++ + R D+ EA+ IG V Q
Sbjct: 132 RMPGLKFGLVL---GTRRFRDIVGADQALSILGSARAFDADEARRIGFVRDCAAQAQWPA 188
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
AE P R +
Sbjct: 189 LI----DAAAEAATALDPATRATLHRVLRDDHDDA------------------------- 219
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKP 328
+ + ++ +L +
Sbjct: 220 ---------------DLAALARSA--AQPGFKARIRDYLAQPAA 246
|
| >3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334 | Back alignment and structure |
|---|
Score = 223 bits (570), Expect = 3e-71
Identities = 69/321 (21%), Positives = 111/321 (34%), Gaps = 59/321 (18%)
Query: 29 KEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL 88
LT I YH + V + NRP+ RNA V+E+ ++ R +V VLL
Sbjct: 49 DGFDDLTDITYHRHVD-DATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLL 107
Query: 89 ------RSLVKDVFCAGADLKHRLTLNE-----------DQIRSFVSTLRYMTCQLESIP 131
FC+G D + R D R+ + + + +P
Sbjct: 108 TGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMP 167
Query: 132 VPVLAVLDGSAYGGGLEMALACDIRVAAS-NVRMGLVETKLAIIPGAGGTQRLPRIVGIP 190
V+ +++G A GGG + + CD+ +A+ R + + G G+ L R VG
Sbjct: 168 KVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQK 227
Query: 191 LAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKR 250
A+E+ + GR + + +G VN + + L+ A +I P A RM K
Sbjct: 228 FAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVG----LQWAAEINAKSPQAQRMLKF 283
Query: 251 SIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVI 310
+ N G + G
Sbjct: 284 AF------------------------------------NLLDDGLVGQQLFAGEATRLAY 307
Query: 311 RTQDRVEGLKSFLGKYKPVYK 331
T + VEG +FL K P +
Sbjct: 308 MTDEAVEGRDAFLQKRPPDWS 328
|
| >3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256 | Back alignment and structure |
|---|
Score = 220 bits (563), Expect = 5e-71
Identities = 73/288 (25%), Positives = 117/288 (40%), Gaps = 46/288 (15%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R ++ + +NRP ARNA+N + + + A + + ++ ++ FCAG DLK
Sbjct: 14 RDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITG-AGGNFCAGMDLK- 71
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
V + R + P++A ++G A GG E+ L+CD+ VA + +
Sbjct: 72 -----AFVSGEAVLSERGLGFTNVPPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKF 126
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
G+ E K ++ GAGG RLP + +A EL TG + +A G +N L +
Sbjct: 127 GIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFINRLVDDGQALD 186
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
A L +A I NGP+AV KR I + S
Sbjct: 187 TA----LELAAKITANGPLAVAATKRII---------IESASWAPE-------------- 219
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+G + ++D EG K+F K PV++G
Sbjct: 220 ------------EAFAKQGEILMPIFVSEDAKEGAKAFAEKRAPVWQG 255
|
| >3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274 | Back alignment and structure |
|---|
Score = 220 bits (564), Expect = 5e-71
Identities = 58/301 (19%), Positives = 111/301 (36%), Gaps = 58/301 (19%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
+ +NRP A NAL+ ++ E+ A D+ V +++ R+ FC+GA
Sbjct: 18 DGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRA-----FCSGA 72
Query: 101 DLKHRLTLNEDQI-------RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALAC 153
D+K + + T ++ PVL ++G G G++
Sbjct: 73 DVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTT 132
Query: 154 DIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR--LVDSTEAKSIG 211
DI +A+ + ++ G R+ R++ +A + G+ + + A +G
Sbjct: 133 DIVIASEQATFFDPHVSIGLVAG-RELVRVSRVLPRSIALRMALMGKHERMSAQRAYELG 191
Query: 212 LVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPG 271
L++ + + A IA+ + N P+AVR + +I
Sbjct: 192 LISEIVEHDRLLERA----HEIADIVNSNAPLAVRGTRLAIL------------------ 229
Query: 272 RDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYK 331
KG E +RV+RT+D EG ++F+ K +P ++
Sbjct: 230 ------KGLNVPLHE-----------AEILAETFRERVLRTEDAAEGPRAFVEKRQPNWQ 272
Query: 332 G 332
Sbjct: 273 C 273
|
| >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258 | Back alignment and structure |
|---|
Score = 219 bits (561), Expect = 1e-70
Identities = 64/280 (22%), Positives = 101/280 (36%), Gaps = 41/280 (14%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R + + ++R RNA ++ ++ ++ A+ EE RC +L + + F AG DL
Sbjct: 19 RGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFA-HGEHFTAGLDLME 77
Query: 105 RLTLNEDQIRSFVST-LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
+ + P++ + G+ + G+E+ L DI VAA R
Sbjct: 78 LAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTR 137
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
+E I P G T R PR G A I TG D+ EA + L+ +
Sbjct: 138 FAHLEVLRGIPPLGGSTVRFPRAAGWTDAMRYILTGDEFDADEALRMRLLTEVVEPGEEL 197
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283
A L AE IA P+AVR A +S QG G+
Sbjct: 198 ARA----LEYAERIARAAPLAVRAALQSAF---------------------QGRDEGDDA 232
Query: 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFL 323
N +I ++D EG+ + +
Sbjct: 233 ALSRVNESLA--------------ALIGSEDVREGVLAMV 258
|
| >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264 | Back alignment and structure |
|---|
Score = 218 bits (559), Expect = 2e-70
Identities = 62/289 (21%), Positives = 99/289 (34%), Gaps = 44/289 (15%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
RPG++E+ R + NA+ L + + E VR VLLR VF AG
Sbjct: 17 PRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGG-VFSAGGSFG 74
Query: 104 HR--LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
+ + + + R + + P PV+A ++ A G GL +ALA DI V
Sbjct: 75 LIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKG 134
Query: 162 VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNP 221
R+ +L + G P +VG+ AK + + EA+ +GLV
Sbjct: 135 TRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVEDEK 194
Query: 222 NQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281
A L +AE +A A+ K ++
Sbjct: 195 VYEKA----LEVAERLAQGPKEALHHTKHAL----------------------------- 221
Query: 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVY 330
N ++ E ++ EGLK+ K P +
Sbjct: 222 -------NHWYRSFLPHFELSLALEFLGFSGKELEEGLKALKEKRPPEF 263
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257 | Back alignment and structure |
|---|
Score = 215 bits (549), Expect = 6e-69
Identities = 72/289 (24%), Positives = 115/289 (39%), Gaps = 43/289 (14%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ + L +NRP NA + E+ A++ D VRCV++ + FCAG DL
Sbjct: 10 KGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGR-AFCAGEDLSG 68
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
D S M L + PV+A ++G+A G G+ +ALACD R+ +
Sbjct: 69 VTE-EMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASF 127
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
+ ++P AG LPR+VG A EL G V + EA ++GL + P + +
Sbjct: 128 APAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVIPLSDWEE 187
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
+ AE ++ A+ + KR +
Sbjct: 188 EV----KQFAERLSAMPTKAIGLIKRLL-------------------------------- 211
Query: 285 TENQNREFQGRYS-GMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+ + +E E C T D EG+K+F K KP+++G
Sbjct: 212 ----RESEETTFDRYLEREAECQRIAGLTSDHREGVKAFFEKRKPLFQG 256
|
| >4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275 | Back alignment and structure |
|---|
Score = 215 bits (550), Expect = 7e-69
Identities = 80/302 (26%), Positives = 125/302 (41%), Gaps = 51/302 (16%)
Query: 37 IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL-----RSL 91
I+Y+ + GI ++ +NRP RNA V E+ A R D + VLL S
Sbjct: 12 ILYY---KAGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSD 68
Query: 92 VKDVFCAGADLKHR--LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEM 149
K FC+G D R +DQ ++ L + S+P V+A++ G A GGG +
Sbjct: 69 GKYAFCSGGDQSVRGEGGYIDDQGTPRLNVLDLQR-LIRSMPKVVIALVAGYAIGGGHVL 127
Query: 150 ALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKS 209
L CD+ +AA N G K+ G G+ L RIVG A+E+ Y R + EA+
Sbjct: 128 HLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQEAER 187
Query: 210 IGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHS 269
+G+VNT+ P + + ++ A++I P+A+R K +
Sbjct: 188 MGMVNTVVPVDRLEEEG----IQWAKEILSKSPLAIRCLKAAF----------------- 226
Query: 270 PGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPV 329
N + G+ E G T++ EG ++FL K P
Sbjct: 227 -------------------NADCDGQAGLQELAGNATLLYYMTEEGSEGKQAFLEKRPPD 267
Query: 330 YK 331
+
Sbjct: 268 FS 269
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257 | Back alignment and structure |
|---|
Score = 214 bits (548), Expect = 9e-69
Identities = 49/245 (20%), Positives = 89/245 (36%), Gaps = 11/245 (4%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
G++ + ++ +T +E+ I D E + V+L FC D
Sbjct: 23 DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGP-SFCNEIDFTS 81
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
+ + + L SI VPV+A ++G E+ + DI +AA +
Sbjct: 82 FNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPV-TNAPEIPVMSDIVLAAESATF 140
Query: 165 G-LVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
I+PG G P ++G + + TG+ +D+ A G VN + +
Sbjct: 141 QDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQELL 200
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283
A +A IA +A R A++ + R + R ++ S G + +
Sbjct: 201 PRA----WELARGIAEKPLLARRYARKVLT---RQLR-RVMEADLSLGLAHEALAAIDLG 252
Query: 284 GTENQ 288
Q
Sbjct: 253 MESEQ 257
|
| >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263 | Back alignment and structure |
|---|
Score = 214 bits (547), Expect = 1e-68
Identities = 44/211 (20%), Positives = 84/211 (39%), Gaps = 8/211 (3%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
+ GI+E+ M+ + E A I D + R V+L D + A D
Sbjct: 30 DENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTG-SGDAWMAEIDFP 88
Query: 104 HRLTL-NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
+ N + + + L I VPV++ ++G+A E L DI +A+ N
Sbjct: 89 SLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAALLHS-EYILTTDIILASENT 147
Query: 163 RM-GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNP 221
+ I+PG G P +G+ + ++T + + +A + +V+ + PQ+
Sbjct: 148 VFQDMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQSK 207
Query: 222 NQNAAYLASLRIAEDIAHNGPIAVRMAKRSI 252
A IA +A + +R + ++
Sbjct: 208 LMERA----WEIARTLAKQPTLNLRYTRVAL 234
|
| >3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276 | Back alignment and structure |
|---|
Score = 213 bits (546), Expect = 3e-68
Identities = 50/288 (17%), Positives = 96/288 (33%), Gaps = 54/288 (18%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
+ + +NRP + N++N L + + + D R ++ R+ F AG
Sbjct: 35 DGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRA-----FSAGG 89
Query: 101 DLKH--RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVA 158
D + L+ + D + R + + +PV+A ++G A G G + DI
Sbjct: 90 DFGYLKELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYI 149
Query: 159 ASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218
A N + ++ ++ GG P + + LAKE TG + + A +GL N +
Sbjct: 150 AENAYLADPHVQVGLVAADGGPLTWPLHISLLLAKEYALTGTRISAQRAVELGLANHVAD 209
Query: 219 QNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSK 278
++ A+ I AV KR +
Sbjct: 210 D------PVAEAIACAKKILELPQQAVESTKRVL-------------------------- 237
Query: 279 GGESKGTENQNREFQGRY-SGMEWEGICYDRVIRTQDRVEGLKSFLGK 325
N + + +++ + T+D + K
Sbjct: 238 ----------NIHLERAVLASLDYALSAESQSFVTEDFRSIVTKLADK 275
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268 | Back alignment and structure |
|---|
Score = 212 bits (542), Expect = 9e-68
Identities = 70/288 (24%), Positives = 116/288 (40%), Gaps = 43/288 (14%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--- 103
+ L MNR NA + L+ E+ +++ D VR ++L++ K F AGADL
Sbjct: 13 KVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGK-HFSAGADLTWMQ 71
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
E++ L + + P P +A++ G+A+GGG +A ACDI +A+++ R
Sbjct: 72 SMANFTEEENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSAR 131
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
E KL +IP A + + R +G AK L + + D+T A S+ LV P +
Sbjct: 132 FCFSEVKLGLIP-AVISPYVVRAIGERAAKMLFMSAEVFDATRAYSLNLVQHCVPDDTLL 190
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283
L+ A I++N P AV+ +K+
Sbjct: 191 EFT----LKYASQISNNAPEAVKNSKQLA--------QYVANKKIDEE------------ 226
Query: 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYK 331
+ + + + EGLK+FL K P +
Sbjct: 227 --------------LVRYTASLIAHKRVSDEGQEGLKAFLNKEIPNWN 260
|
| >3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262 | Back alignment and structure |
|---|
Score = 212 bits (541), Expect = 1e-67
Identities = 74/289 (25%), Positives = 109/289 (37%), Gaps = 44/289 (15%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ + +NRP ARNA++ +L A D E +L FCAGADLK
Sbjct: 18 AGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNG-TFCAGADLKA 76
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
T +++ M + PV+A + G A GG+E+AL CD+RV + +
Sbjct: 77 MGTDRGNEL--HPHGPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVL 134
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
G+ + + GGT RLPR++G A +LI TGR V + EA IGLVN + + +
Sbjct: 135 GVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNRVVARGQARE 194
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
AA +A +IA VR + S E
Sbjct: 195 AA----ETLAAEIAAFPQQCVRADRDSA---------IAQWGMA------------EEAA 229
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333
+N+ + +EG F GV
Sbjct: 230 LDNEFGSI----------------ERVATEALEGAGRFAAGEGRHGAGV 262
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255 | Back alignment and structure |
|---|
Score = 210 bits (538), Expect = 2e-67
Identities = 58/286 (20%), Positives = 112/286 (39%), Gaps = 46/286 (16%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
++ + ++RP+ NA++ ++EE+ + DE VR VLL + FC+G DL
Sbjct: 15 AVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRA-FCSGGDLT--- 70
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
+ + S+P PV+A + G+A G G +ALACD+ VAA L
Sbjct: 71 ---GGDTAGAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQL 127
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
T++ ++P G + LP ++G + T + + A G+++ +T + ++
Sbjct: 128 AFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITSADEYESVL 187
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTE 286
+ ++ +A KR++ +T +
Sbjct: 188 ----TDVLRSVSGGPTLAFGWTKRALA-----------AATLAELEP------------- 219
Query: 287 NQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
E ++ T D EG ++F + P ++G
Sbjct: 220 -----------VQAIEAEGQLALVETADFREGARAFRERRTPNFRG 254
|
| >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269 | Back alignment and structure |
|---|
Score = 210 bits (538), Expect = 4e-67
Identities = 65/298 (21%), Positives = 109/298 (36%), Gaps = 53/298 (17%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
G+ E+ + P+ RNAL+ ++E+ A+ D+ V V++ + FCAG
Sbjct: 10 EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDA-----FCAGF 64
Query: 101 DLKHRLTLN-----EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDI 155
L+ D R M ++ + PVLA ++G A GGGL ++LA D+
Sbjct: 65 YLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDM 124
Query: 156 RVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNT 215
+ A + + + I + L RIVG+ A EL+ T R + EAK GLV+
Sbjct: 125 AICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSR 184
Query: 216 LTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQ 275
+ P++ + A ++A ++A MAK
Sbjct: 185 VYPKDEFREVA----WKVARELAAAPTHLQVMAKERFH---------------------- 218
Query: 276 GSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333
G E+E + + L FL ++ V
Sbjct: 219 -------AGWMQ------PVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADRPQV 263
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279 | Back alignment and structure |
|---|
Score = 210 bits (538), Expect = 5e-67
Identities = 65/294 (22%), Positives = 112/294 (38%), Gaps = 47/294 (15%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
G+ + + RP NAL ++ + + VR ++L + FC+G D+
Sbjct: 24 TDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGR-GFCSGGDVDE 82
Query: 105 R----LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS 160
L+++ ++ F + + P PV+A L G A G G +ALA D RVA
Sbjct: 83 IIGATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADP 142
Query: 161 NVRMGLVETKLAIIPG-AGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219
+ R + T++ + G G LPR+VG+ A L+ G V + EA+ IGL++ LT +
Sbjct: 143 STRFAFLFTRVGLSGGDMGAAYLLPRVVGLGHATRLLMLGDTVRAPEAERIGLISELTEE 202
Query: 220 NPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKG 279
AA +A +A +A K +
Sbjct: 203 GRADEAA----RTLARRLADGPALAHAQTKALL--------------------------- 231
Query: 280 GESKGTENQNREFQGRY-SGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
E + +E + ++ +D E +F K P ++G
Sbjct: 232 ---------TAELDMPLAAAVELDASTQALLMTGEDYAEFHAAFTEKRPPKWQG 276
|
| >3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233 | Back alignment and structure |
|---|
Score = 209 bits (534), Expect = 5e-67
Identities = 37/207 (17%), Positives = 72/207 (34%), Gaps = 7/207 (3%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
I + M+ + N L T+ + + A++A D V +++ + VF G DLK
Sbjct: 14 AIGVIRMDDGKV-NVLGPTMQQALNEAIDAADRDN-VGALVIAGNHR-VFSGGFDLKVLT 70
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
+ + ++ +L S P PV+ G A G + + D RVAA +
Sbjct: 71 SGEAKPAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQA 130
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
E + + + L + ++ + A + G ++ ++ + A
Sbjct: 131 NEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEISLPEVVLSRA 190
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSID 253
A + A A K
Sbjct: 191 ----EEAAREFAGLNQQAHNATKLRAR 213
|
| >3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279 | Back alignment and structure |
|---|
Score = 209 bits (534), Expect = 2e-66
Identities = 69/315 (21%), Positives = 117/315 (37%), Gaps = 53/315 (16%)
Query: 21 PNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGD 80
P++ E R I Y I + +NRP+A NA N L++E+ A D
Sbjct: 6 PSWRRPSRPEQRTEMYIDYD---VSDRIATITLNRPEAANAQNPELLDELDAAWTRAAED 62
Query: 81 EEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY-----MTCQLESIPVPVL 135
+V ++LR+ K F AG DL+ + + F+ + + ++P P +
Sbjct: 63 NDVSVIVLRANGK-HFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSI 121
Query: 136 AVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKEL 195
A + G GGL + CD+ +AA + + I G +G AKE+
Sbjct: 122 AAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDI--GGVEYHGHTWELGPRKAKEI 179
Query: 196 IYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLAS--LRIAEDIAHNGPIAVRMAKRSID 253
++TGR + + E G+VN + P L + +A +IA P A+R AKR++
Sbjct: 180 LFTGRAMTAEEVAQTGMVNRVVP------RDRLDAETRALAGEIAKMPPFALRQAKRAV- 232
Query: 254 GPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQ 313
NQ + QG Y+ ++ +
Sbjct: 233 ---------------------------------NQTLDVQGFYAAIQSVFDIHQTGHGNA 259
Query: 314 DRVEGLKSFLGKYKP 328
V G + +
Sbjct: 260 MSVSGWPVLVDIEEM 274
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298 | Back alignment and structure |
|---|
Score = 209 bits (534), Expect = 4e-66
Identities = 66/301 (21%), Positives = 101/301 (33%), Gaps = 57/301 (18%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
G+ + NR NA L A++ D +R ++L R FCAGA
Sbjct: 37 PGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRG-----FCAGA 91
Query: 101 DLKHR--------LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALA 152
L + + PV+A ++G G GL AL
Sbjct: 92 YLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALM 151
Query: 153 CDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGL 212
CD+R AA+ + V + +I G + LPR+ +A +L+ +GR + EA +GL
Sbjct: 152 CDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEEAAQLGL 211
Query: 213 VNTLTPQNPNQNAAYLASLRIAEDIAHNG-PIAVRMAKRSIDGPGRGTQYRDGQSTHSPG 271
V + A L AEDIA P ++ + KR + Y D
Sbjct: 212 VKEVVTPEQLMPRA----LEYAEDIARYCSPSSMAVIKRQV--------YGDATRDVV-- 257
Query: 272 RDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYK 331
+ + D +EG+ SFL K P +
Sbjct: 258 -------------------------EATSHAEVLLREAMPRPDVIEGIVSFLEKRPPQFP 292
Query: 332 G 332
Sbjct: 293 S 293
|
| >3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256 | Back alignment and structure |
|---|
Score = 207 bits (530), Expect = 4e-66
Identities = 59/282 (20%), Positives = 96/282 (34%), Gaps = 41/282 (14%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
+ L +NRP+A NA N L + A+ D +V VLL + F AG DL
Sbjct: 15 RVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGR-GFSAGTDLAEMQ 73
Query: 107 TLNEDQIRSFVST-LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
D S R + L P P++ ++G G G + D+ +S R+
Sbjct: 74 ARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLK 133
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNA 225
T L + P A + LP++VG A L+ + +D+ EA +GLV +
Sbjct: 134 CPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRICSPEELLPE 193
Query: 226 AYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGT 285
A R AE +A ++ K ++ +
Sbjct: 194 A----RRHAEILAAKPISSLMAVKHTMV-----------------------------EPN 220
Query: 286 ENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYK 327
Q E + ++ Q L F + +
Sbjct: 221 RAQIAA------ASARENAHFAELMGAQANAAALADFTDRRR 256
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261 | Back alignment and structure |
|---|
Score = 207 bits (529), Expect = 6e-66
Identities = 45/282 (15%), Positives = 95/282 (33%), Gaps = 45/282 (15%)
Query: 53 MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL----TL 108
+ N+LN ++ E+ +A+ D+ + VLL + V VFC G D + +
Sbjct: 21 STKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSA-VGSVFCCGLDFIYFIRRLTDD 78
Query: 109 NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVE 168
+ + +R P++ ++G A G G + CD+ A
Sbjct: 79 RKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPY 138
Query: 169 TKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYL 228
T P T P+I+G A E++ +GR + + EA GLV+ +
Sbjct: 139 TTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEV-- 196
Query: 229 ASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQ 288
+ +++A P+ + +K + + +
Sbjct: 197 --MVRIKELASCNPVVLEESKALVR-----------------------------CNMKME 225
Query: 289 NREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVY 330
+ E E ++ + ++ + +L + +
Sbjct: 226 LEQ------ANERECEVLKKIWGSAQGMDSMLKYLQRKIDEF 261
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305 | Back alignment and structure |
|---|
Score = 204 bits (521), Expect = 3e-64
Identities = 52/292 (17%), Positives = 98/292 (33%), Gaps = 41/292 (14%)
Query: 44 ERPGIVELCMNRPQA----RNALNATLVEEILTAVEAI----RGDEEVRCVLLRSLVKDV 95
+ + + M+ A R + LV++I + + ++ + DV
Sbjct: 38 PQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDV 97
Query: 96 FCAGADLKHRLTLNEDQIRSFVSTLRYMTC-------QLESIPVPVLAVLDGSAYGGGLE 148
F G DL L + R+ + +A++ G+A GGG E
Sbjct: 98 FNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFE 157
Query: 149 MALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAK 208
AL+C +A V MGL E + PG G + + + LA++++ G L + +
Sbjct: 158 AALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQLL 217
Query: 209 SIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTH 268
+GLV+ + P+ +A++ + P A ++ +
Sbjct: 218 GMGLVDRVVPR-----GQGVAAVEQVIRESKRTPHAWAAMQQVRE--------------- 257
Query: 269 SPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLK 320
+ + E DR++R Q R GL
Sbjct: 258 ------MTTAVPLEEMMRITEIWVDTAMQLGEKSLRTMDRLVRAQSRRSGLD 303
|
| >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440 | Back alignment and structure |
|---|
Score = 207 bits (528), Expect = 9e-64
Identities = 63/305 (20%), Positives = 103/305 (33%), Gaps = 65/305 (21%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLR--------SLVKDVF 96
R G+ L M R NA + V+++ TAV+ D VR LLR K VF
Sbjct: 174 RDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVF 233
Query: 97 CAGADLKHRLTLNEDQIRSFVSTLRYMTCQ----------------LESIPVPVLAVLDG 140
AG +LK+ + + + I P +A +DG
Sbjct: 234 SAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDG 293
Query: 141 SAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200
A GGG ++ L D +A+S+ L K IIPG RL R G +++++I GR
Sbjct: 294 FAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPG-AANLRLGRFAGPRVSRQVILEGR 352
Query: 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQ 260
+ + E ++ LV+ + + A R + + +A R D G +
Sbjct: 353 RIWAKEPEARLLVDEVVEPDELDAAI----ERSLTRLDGDAVLANRRMLNLADESPDGFR 408
Query: 261 YRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLK 320
M + + D ++ +
Sbjct: 409 A------------------------------------YMAEFALMQALRLYGHDVIDKVG 432
Query: 321 SFLGK 325
F G+
Sbjct: 433 RFGGR 437
|
| >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232 | Back alignment and structure |
|---|
Score = 198 bits (505), Expect = 1e-62
Identities = 38/208 (18%), Positives = 77/208 (37%), Gaps = 10/208 (4%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
G+ L +N + NA++ ++ A++ D V++ + G DLK
Sbjct: 15 GVATLTLNNGKV-NAISPDVIIAFNAALDQAEKDR--AIVIVTGQPG-ILSGGYDLKVMT 70
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS-NVRMG 165
+ E I V+ + ++ S P P++ G A G + L+ D R+ + +G
Sbjct: 71 SSAEAAIN-LVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIG 129
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNA 225
L E ++ + G + + + + D A + G ++ + Q A
Sbjct: 130 LNEVQIGMTMHHAGIELARDRLRKSAFNRSVINAEMFDPEGAMAAGFLDKVVSVEELQGA 189
Query: 226 AYLASLRIAEDIAHNGPIAVRMAKRSID 253
A L +A + A + K +
Sbjct: 190 A----LAVAAQLKKINMNAHKKTKLKVR 213
|
| >2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 4e-61
Identities = 49/299 (16%), Positives = 97/299 (32%), Gaps = 54/299 (18%)
Query: 47 GIVELC-MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
G ++ R +NALN +++EI+ A+ + D+ + VL + VFC G D +
Sbjct: 32 GFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADD-SKLVLFSA-AGSVFCCGLDFGYF 89
Query: 106 LTL----NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
+ V T++ P++ ++G A G G + CD+ A
Sbjct: 90 VKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEK 149
Query: 162 VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNP 221
T P + P+++G A E++ GR + + EA + GLV+ +
Sbjct: 150 AWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGT 209
Query: 222 NQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281
+ +++A PI + K +
Sbjct: 210 FTQEV----MIQIKELASYNPIVLEECKALVR---------------------------- 237
Query: 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGL--------KSFLGKYKPVYKG 332
+ + + E E ++ + +E + K+ K
Sbjct: 238 -CNIKLELEQ------ANERECEVLRKIWSSAQGIESMLKIPLLGYKAAFPPRKTQNDQ 289
|
| >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267 | Back alignment and structure |
|---|
Score = 195 bits (498), Expect = 4e-61
Identities = 46/288 (15%), Positives = 88/288 (30%), Gaps = 47/288 (16%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--H 104
+ + +RP+A N +N TL+EE L + V V+L L + VFC GAD + +
Sbjct: 16 SVCYITFHRPEANNTINDTLIEECLQVLNQCE-TSTVTVVVLEGLPE-VFCFGADFQEIY 73
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
+ + S L + +L++ P ++ + G GGL A DI +A
Sbjct: 74 QEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASF 133
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
L E + P A L R +G A + + + EA GL++
Sbjct: 134 SLSELLFGLYP-ACVLPFLIRRIGRQKAHYMTLMTKPISVQEASEWGLIDAFDA------ 186
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
+ + + + + K+ +
Sbjct: 187 ESDVLLRKHLLRLRRLNKKGIAHYKQFMSSLDHQVS------------------------ 222
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+ G+ ++ + ++
Sbjct: 223 ------------RAKATALTANQDMFSDPQNQMGIIRYVETGQFPWED 258
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286 | Back alignment and structure |
|---|
Score = 195 bits (498), Expect = 5e-61
Identities = 70/289 (24%), Positives = 112/289 (38%), Gaps = 42/289 (14%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
+ G+V L +NRPQA NAL+ ++ + A + DE VR V+L + K FCAG DLK
Sbjct: 32 DERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGK-AFCAGHDLK 90
Query: 104 -HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
R + + + + ++ +P PV+A + G A G ++ CD+ VA +
Sbjct: 91 EMRAEPSREYYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDA 150
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPN 222
R + + + G L R VG A E++ TG V + +AK +GLVN +
Sbjct: 151 RFAVSGINVGLFCSTPGVA-LSRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVVAPKAL 209
Query: 223 QNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGES 282
+ + I AV M K YR ++
Sbjct: 210 DDEI----EAMVSKIVAKPRAAVAMGKALF--------YRQIETDIE------------- 244
Query: 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYK 331
S G + +EG+ +FL K +P +
Sbjct: 245 --------------SAYADAGTTMACNMMDPSALEGVSAFLEKRRPEWH 279
|
| >3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 2e-60
Identities = 53/213 (24%), Positives = 81/213 (38%), Gaps = 17/213 (7%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--- 103
+ L +N P RNAL+ LV ++ + D VR V+L FCAGADL
Sbjct: 20 PVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGG-TFCAGADLSEAG 78
Query: 104 --HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
+ D + + + +PV+A +DG GG + ACDI VA
Sbjct: 79 SGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPR 138
Query: 162 VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNP 221
L E ++ + P LP++ A TG D+ A+ IGL+
Sbjct: 139 SSFALTEARIGVAPAIISLTLLPKL-SARAAARYYLTGEKFDARRAEEIGLITMAAED-- 195
Query: 222 NQNAAYL--ASLRIAEDIAHNGPIAVRMAKRSI 252
L A ++ D+ P + +K
Sbjct: 196 ------LDAAIDQLVTDVGRGSPQGLAASKALT 222
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 5e-60
Identities = 49/215 (22%), Positives = 92/215 (42%), Gaps = 13/215 (6%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
G++ L + R + L+ ++ + A+ GD+ V +++ + +FCAG DLK
Sbjct: 13 LSEGVLTLTLGRAP-AHPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGR-IFCAGHDLK 70
Query: 104 --HRLTLNEDQIRSFVSTLR----YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRV 157
R + D+ R+FV+ L + L P P +A+++G A GL++ ACD+
Sbjct: 71 EIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAY 130
Query: 158 AASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLT 217
A+ R L + + R++G E+ TG D+ A + GL+N +
Sbjct: 131 ASPAARFCLPGVQNGGFCTTPAV-AVSRVIGRRAVTEMALTGATYDADWALAAGLINRIL 189
Query: 218 PQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSI 252
P+ +A +A +R ++
Sbjct: 190 PEAALATHV----ADLAGALAARNQAPLRRGLETL 220
|
| >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287 | Back alignment and structure |
|---|
Score = 192 bits (491), Expect = 7e-60
Identities = 60/323 (18%), Positives = 122/323 (37%), Gaps = 46/323 (14%)
Query: 12 PARVKVTKWPNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEIL 71
+ N GR+ ++ ++ + GI + ++ P+ RN L+ +++ +
Sbjct: 7 HSSGVDLGTENLYFQSMGAGRRESEPRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQ 66
Query: 72 TAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--HRLTLNEDQIRSFVSTLRYMTCQLES 129
+ + +++ +++ + VF +G DLK + F + + M + +
Sbjct: 67 SDILHDADSNDLKVIIISAEGP-VFSSGHDLKELTEEQGRDYHAEVFQTCSKVMM-HIRN 124
Query: 130 IPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGI 189
PVPV+A+++G A G ++ +CDI VA+ + + G L R V
Sbjct: 125 HPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPR 183
Query: 190 PLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAK 249
+A E+++TG + + EA GL++ + P+ Q +RIA IA V + K
Sbjct: 184 KVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEET----MRIARKIASLSRPVVSLGK 239
Query: 250 RSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQ-GRYSGMEWEGICYDR 308
+ ++ +
Sbjct: 240 ATF------------------------------------YKQLPQDLGTAYYLTSQAMVD 263
Query: 309 VIRTQDRVEGLKSFLGKYKPVYK 331
+ +D EG+ +FL K KPV+
Sbjct: 264 NLALRDGQEGITAFLQKRKPVWS 286
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 2e-59
Identities = 55/287 (19%), Positives = 106/287 (36%), Gaps = 45/287 (15%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GI ++ NRP+ +NA+N + EI+ A++A D+ + VL + D + +G DL +
Sbjct: 35 GITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSIITVLTGN--GDYYSSGNDLTNFT 92
Query: 107 TLN----EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
+ E++ ++ LR P P++AV++G A G + + D A+
Sbjct: 93 DIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRA 152
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPN 222
+ L P + P+I+ A E++ G+ + + EA + GLV + P +
Sbjct: 153 TFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTF 212
Query: 223 QNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGES 282
Q + A P A+R++K I R
Sbjct: 213 QKEV----WTRLKAFAKLPPNALRISKEVIRKREREK----------------------- 245
Query: 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPV 329
++ E + + + +FL + +
Sbjct: 246 ------------LHAVNAEECNVLQGRWLSDECTNAVVNFLSRKSKL 280
|
| >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280 | Back alignment and structure |
|---|
Score = 188 bits (480), Expect = 2e-58
Identities = 38/227 (16%), Positives = 72/227 (31%), Gaps = 15/227 (6%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
+ + P NAL + +E + +V +++S F +GAD K
Sbjct: 18 PFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQS-SGRFFSSGADFKGIA 76
Query: 107 TLNEDQ-----------IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDI 155
D + +FV+ Y+T ++ L+G A G + CDI
Sbjct: 77 KAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDI 136
Query: 156 RVAAS-NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVN 214
+ + V + L +I G T LP G E + + G ++
Sbjct: 137 VYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFIS 196
Query: 215 TLTPQNPNQNAAYLASL--RIAEDIAHNGPIAVRMAKRSIDGPGRGT 259
+ A+ A + + E + + K+ +
Sbjct: 197 KNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSNHIDA 243
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 4e-57
Identities = 60/254 (23%), Positives = 91/254 (35%), Gaps = 21/254 (8%)
Query: 22 NYST-SVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGD 80
Y +S G T I + + N+ + + E+ A++ IR +
Sbjct: 19 QYKHWKLSFNGPVATLGI-----DIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFE 73
Query: 81 E-EVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLE----SIPVPVL 135
EVR V+L SL VFC+GA++ +F LE + L
Sbjct: 74 HPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFL 133
Query: 136 AVLDGSAYGGGLEMALACDIRVAA--SNVRMGLVETK-LAIIPGAGGTQRL--PRIVGIP 190
A ++G+ GGG E+ALACD + + L E L ++PG GG R+ R V
Sbjct: 134 AAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHD 193
Query: 191 LAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKR 250
A V AK+ LV+ + N A A ++A
Sbjct: 194 RADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAI----QARALELAAQSDRPAHAQGV 249
Query: 251 SIDGPGRGTQYRDG 264
+ T DG
Sbjct: 250 PLT-RIERTDREDG 262
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 5e-10
Identities = 38/206 (18%), Positives = 71/206 (34%), Gaps = 16/206 (7%)
Query: 26 SVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDE-EVR 84
++ + R T E P ++ + N E A+ ++R +E V
Sbjct: 271 TIDRAKRIATFTAKAPQTEPPASIDAIVA--AGANWWPLKFAREFDDAILSMRTNELAVG 328
Query: 85 CVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD-GSAY 143
+ R+ AD + +R + LR +++ + A+++ GS +
Sbjct: 329 TWVFRTEGDARHLLAADASLMQHKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCF 388
Query: 144 GGGL-EMALACDIRV-------AASNVRMGLVETKLAIIPGAGGTQRLP-RIVGIPLAKE 194
G E+A A D + L E + P RL R +
Sbjct: 389 AGTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGLYPMVTHQSRLARRFYEETEPLD 448
Query: 195 LIY--TGRLVDSTEAKSIGLVNTLTP 218
+ G+ + EA+ +GLV T +P
Sbjct: 449 AVRSRIGQAIKPVEAERLGLV-TASP 473
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333 | Back alignment and structure |
|---|
Score = 183 bits (465), Expect = 2e-55
Identities = 58/318 (18%), Positives = 100/318 (31%), Gaps = 68/318 (21%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ + NRP+ NA+ A E+ VE D +V +L+ + FCAG DL
Sbjct: 42 TDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEG-FCAGFDLSA 100
Query: 105 R------------------------------LTLNEDQIRSFVSTLRYMTCQLESIPVPV 134
+ +S L P
Sbjct: 101 YAEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPT 160
Query: 135 LAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKE 194
+ + G GG ++AL D +AA++ ++G ++ +P AG +G AK
Sbjct: 161 VVKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAG---LWAHRLGDQRAKR 217
Query: 195 LIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYL--ASLRIAEDIAHNGPIAVRMAKRSI 252
L++TG + +A GL A L + R+ E IA + MAK +
Sbjct: 218 LLFTGDCITGAQAAEWGLAVEAPD------PADLDARTERLVERIAAMPVNQLIMAKLAC 271
Query: 253 DGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRT 312
+ + + G + + F G + EG +
Sbjct: 272 N-----------TALLNQGVATS----------QMVSTVFDGI-ARHTPEGHAF----VA 305
Query: 313 QDRVEGLKSFLGKYKPVY 330
R G + + +
Sbjct: 306 TAREHGFREAVRRRDEPM 323
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 7e-52
Identities = 71/221 (32%), Positives = 106/221 (47%), Gaps = 23/221 (10%)
Query: 47 GIVELCMNRPQAR-NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK-- 103
GIVEL + N N + E+ AV+AI+ D V+ V++ S KDVF GAD+
Sbjct: 16 GIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEF 74
Query: 104 -HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
L + ++ + + E + VP +A ++G A GGGLEM LA D RV A +
Sbjct: 75 VENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSA 134
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPN 222
++GL E KL I PG GGT RLPR++G+ A E I +G+ + +A + V+ + +
Sbjct: 135 KIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTADKL 194
Query: 223 QNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRD 263
A A+ + KR+I G R
Sbjct: 195 GAA------------------ALDLIKRAISGELDYKAKRQ 217
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725 | Back alignment and structure |
|---|
Score = 179 bits (456), Expect = 3e-51
Identities = 56/176 (31%), Positives = 97/176 (55%), Gaps = 5/176 (2%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--- 103
G+ + + P N+L+ ++ + + E +V+ +++ K F G D+
Sbjct: 17 GVAVITLINPPV-NSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFG 74
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
N + ++ ++ +T LE+ P +A +DG A GGGLE+A+AC R++A +
Sbjct: 75 EMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQ 134
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219
+GL E +L +IPG GGTQRLPR+VG+ A E+I T + V + E S+GL++ + P
Sbjct: 135 LGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVPP 190
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742 | Back alignment and structure |
|---|
Score = 179 bits (455), Expect = 5e-51
Identities = 60/217 (27%), Positives = 106/217 (48%), Gaps = 13/217 (5%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
+ + + P NA++ T++ E+ ++ D V+ +++ FCAGAD+
Sbjct: 30 SLAMIRLCNPPV-NAVSPTVIREVRNGLQKAGSDHTVKAIVICG-ANGNFCAGADIHGFS 87
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
L + +++ PVLA + G A GGGLE+AL C R+A + R+GL
Sbjct: 88 AFTPGL------ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGL 141
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
E L I+PGA GTQ LPR+VG+P+A +LI +G+ + + EA +G+++ + +P + A
Sbjct: 142 PEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVEEA- 200
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRD 263
++ A+ I R+ + +
Sbjct: 201 ----IKFAQKIIDKPIEPRRIFNKPVPSLPNMDSVFA 233
|
| >3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 1e-23
Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 6/175 (3%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--- 103
G++ L NRP+ NAL ++ +I ++ D E ++++ FCAG D++
Sbjct: 17 GVITL--NRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVIS 74
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
+ F + + S P +A++ G GGG+ +++ RVA
Sbjct: 75 EAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCL 134
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218
+ ET + + P GG LPR+ G L L TG + + G+
Sbjct: 135 FAMPETAIGLFPDVGGGYFLPRLQG-KLGYFLALTGFRLKGRDVYRAGIATHFVD 188
|
| >3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407 | Back alignment and structure |
|---|
Score = 99.4 bits (248), Expect = 1e-23
Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 10/186 (5%)
Query: 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVK 93
+ Q + S + G+V L N +A NAL+ +V + + + D + CV+L +
Sbjct: 40 VFQTLATASGKLVGVVTL--NVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGE 97
Query: 94 DVFCAGADLK--HRLTLNEDQ-----IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGG 146
FCAG D++ + ++ + F + L + PVL DG GGG
Sbjct: 98 KAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGG 157
Query: 147 LEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTE 206
L + +V R+ + E + + P GG+ L R+ G + L T +++ +
Sbjct: 158 LGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPG-KMGLFLGLTAYHMNAAD 216
Query: 207 AKSIGL 212
A +GL
Sbjct: 217 ACYVGL 222
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 333 | |||
| 3hrx_A | 254 | Probable enoyl-COA hydratase; the spiral fold, the | 100.0 | |
| 4fzw_C | 274 | 1,2-epoxyphenylacetyl-COA isomerase; structural ge | 100.0 | |
| 4fzw_A | 258 | 2,3-dehydroadipyl-COA hydratase; structural genomi | 100.0 | |
| 3kqf_A | 265 | Enoyl-COA hydratase/isomerase family protein; IDP0 | 100.0 | |
| 3pea_A | 261 | Enoyl-COA hydratase/isomerase family protein; stru | 100.0 | |
| 3gow_A | 254 | PAAG, probable enoyl-COA hydratase; the spiral fol | 100.0 | |
| 3g64_A | 279 | Putative enoyl-COA hydratase; alpha-beta structure | 100.0 | |
| 3moy_A | 263 | Probable enoyl-COA hydratase; ssgcid, seattle stru | 100.0 | |
| 3i47_A | 268 | Enoyl COA hydratase/isomerase (crotonase); structu | 100.0 | |
| 3h81_A | 278 | Enoyl-COA hydratase ECHA8; niaid, decode, infectio | 100.0 | |
| 3sll_A | 290 | Probable enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3p5m_A | 255 | Enoyl-COA hydratase/isomerase; seattle structural | 100.0 | |
| 3hin_A | 275 | Putative 3-hydroxybutyryl-COA dehydratase; structu | 100.0 | |
| 1hzd_A | 272 | AUH, AU-binding protein/enoyl-COA hydratase; RNA-b | 100.0 | |
| 4f47_A | 278 | Enoyl-COA hydratase ECHA19; ssgcid, seattle struct | 100.0 | |
| 1nzy_A | 269 | Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen | 100.0 | |
| 3qre_A | 298 | Enoyl-COA hydratase, ECHA12_1; structural genomics | 100.0 | |
| 2pbp_A | 258 | Enoyl-COA hydratase subunit I; B-oxidation, struct | 100.0 | |
| 2ppy_A | 265 | Enoyl-COA hydratase; beta-oxidation, fatty acid me | 100.0 | |
| 3rsi_A | 265 | Putative enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3qxz_A | 265 | Enoyl-COA hydratase/isomerase; structural genomics | 100.0 | |
| 3myb_A | 286 | Enoyl-COA hydratase; ssgcid, struct genomics, seat | 100.0 | |
| 4hdt_A | 353 | 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti | 100.0 | |
| 3swx_A | 265 | Probable enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3tlf_A | 274 | Enoyl-COA hydratase/isomerase; structural genomics | 100.0 | |
| 2ej5_A | 257 | Enoyl-COA hydratase subunit II; structural genomic | 100.0 | |
| 3r9t_A | 267 | ECHA1_1; ssgcid, seattle structural genomics cente | 100.0 | |
| 3he2_A | 264 | Enoyl-COA hydratase ECHA6; fatty acid metabolism, | 100.0 | |
| 1dci_A | 275 | Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg | 100.0 | |
| 2vx2_A | 287 | Enoyl-COA hydratase domain-containing protein 3; i | 100.0 | |
| 3r9q_A | 262 | Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome | 100.0 | |
| 3lke_A | 263 | Enoyl-COA hydratase; nysgrc, target 112 structural | 100.0 | |
| 3fdu_A | 266 | Putative enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3qk8_A | 272 | Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB | 100.0 | |
| 4eml_A | 275 | Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe | 100.0 | |
| 1mj3_A | 260 | Enoyl-COA hydratase, mitochondrial; homohexamer, l | 100.0 | |
| 3t89_A | 289 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 100.0 | |
| 3oc7_A | 267 | Enoyl-COA hydratase; seattle structural genomics c | 100.0 | |
| 3gkb_A | 287 | Putative enoyl-COA hydratase; structural genomics, | 100.0 | |
| 2fbm_A | 291 | Y chromosome chromodomain protein 1, telomeric IS; | 100.0 | |
| 1ef8_A | 261 | Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc | 100.0 | |
| 1uiy_A | 253 | Enoyl-COA hydratase; lyase, beta-oxidation, croton | 100.0 | |
| 3qxi_A | 265 | Enoyl-COA hydratase ECHA1; structural genomics, se | 100.0 | |
| 3trr_A | 256 | Probable enoyl-COA hydratase/isomerase; ssgcid, st | 100.0 | |
| 3t8b_A | 334 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 100.0 | |
| 2j5i_A | 276 | P-hydroxycinnamoyl COA hydratase/lyase; vanillin, | 100.0 | |
| 2gtr_A | 261 | CDY-like, chromodomain Y-like protein; structural | 100.0 | |
| 1wz8_A | 264 | Enoyl-COA hydratase; lyase, crotonase, hexamer, st | 100.0 | |
| 2f6q_A | 280 | Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis | 100.0 | |
| 3hp0_A | 267 | Putative polyketide biosynthesis enoyl-COA hydrata | 100.0 | |
| 2uzf_A | 273 | Naphthoate synthase; lyase, menaquinone biosynthes | 100.0 | |
| 3qmj_A | 256 | Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, | 100.0 | |
| 1sg4_A | 260 | 3,2-trans-enoyl-COA isomerase, mitochondrial; crot | 100.0 | |
| 3ju1_A | 407 | Enoyl-COA hydratase/isomerase family protein; alph | 100.0 | |
| 3rrv_A | 276 | Enoyl-COA hydratase/isomerase; structural genomics | 100.0 | |
| 2a7k_A | 250 | CARB; crotonase, antibiotic, beta-lactam, biosynth | 100.0 | |
| 3pe8_A | 256 | Enoyl-COA hydratase; emerald biostructures, struct | 100.0 | |
| 4di1_A | 277 | Enoyl-COA hydratase ECHA17; structural genomics, s | 100.0 | |
| 3lao_A | 258 | Enoyl-COA hydratase/isomerase; alpha-beta sandwich | 100.0 | |
| 3bpt_A | 363 | 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet | 100.0 | |
| 3l3s_A | 263 | Enoyl-COA hydratase/isomerase family protein; crot | 100.0 | |
| 3isa_A | 254 | Putative enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3h0u_A | 289 | Putative enoyl-COA hydratase; structural genomics, | 100.0 | |
| 2q35_A | 243 | CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} | 100.0 | |
| 1pjh_A | 280 | Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral | 100.0 | |
| 2j5g_A | 263 | ALR4455 protein; enzyme evolution, C-C bond hydrol | 100.0 | |
| 3njd_A | 333 | Enoyl-COA hydratase; ssgcid, mycobacerium smegmati | 100.0 | |
| 3m6n_A | 305 | RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X | 100.0 | |
| 3r6h_A | 233 | Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m | 100.0 | |
| 1szo_A | 257 | 6-oxocamphor hydrolase; enzyme-product complex; HE | 100.0 | |
| 3ot6_A | 232 | Enoyl-COA hydratase/isomerase family protein; stru | 100.0 | |
| 3t3w_A | 279 | Enoyl-COA hydratase; ssgcid, structural genomics, | 100.0 | |
| 2np9_A | 440 | DPGC; protein inhibitor complex, oxidoreductase; H | 100.0 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 100.0 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 100.0 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 100.0 | |
| 2w3p_A | 556 | Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri | 100.0 | |
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, | 99.86 | |
| 3rst_A | 240 | Signal peptide peptidase SPPA; alpha/beta protein | 99.83 | |
| 3viv_A | 230 | 441AA long hypothetical NFED protein; protein-pept | 99.81 | |
| 2f9y_B | 304 | Acetyl-coenzyme A carboxylase carboxyl transferas | 99.6 | |
| 1y7o_A | 218 | ATP-dependent CLP protease proteolytic subunit; hy | 99.57 | |
| 2f9i_A | 327 | Acetyl-coenzyme A carboxylase carboxyl transferase | 99.54 | |
| 2f9y_A | 339 | Acetyl-COA carboxylase, carboxyltransferase alpha; | 99.53 | |
| 2cby_A | 208 | ATP-dependent CLP protease proteolytic subunit 1; | 99.12 | |
| 3qwd_A | 203 | ATP-dependent CLP protease proteolytic subunit; ca | 98.74 | |
| 2f6i_A | 215 | ATP-dependent CLP protease, putative; structural g | 98.72 | |
| 1yg6_A | 193 | ATP-dependent CLP protease proteolytic subunit; en | 98.72 | |
| 2w3p_A | 556 | Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri | 98.71 | |
| 1tg6_A | 277 | Putative ATP-dependent CLP protease proteolytic S; | 98.61 | |
| 3p2l_A | 201 | ATP-dependent CLP protease proteolytic subunit; st | 98.58 | |
| 1pix_A | 587 | Glutaconyl-COA decarboxylase A subunit; biotin-dep | 98.2 | |
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, | 98.18 | |
| 4gm2_A | 205 | ATP-dependent CLP protease proteolytic subunit; st | 98.01 | |
| 3iav_A | 530 | Propionyl-COA carboxylase complex B subunit; accas | 97.97 | |
| 2f9i_B | 285 | Acetyl-coenzyme A carboxylase carboxyl transferase | 97.92 | |
| 3n6r_B | 531 | Propionyl-COA carboxylase, beta subunit; protein c | 97.85 | |
| 1on3_A | 523 | Methylmalonyl-COA carboxyltransferase 12S subunit; | 97.67 | |
| 2bzr_A | 548 | Propionyl-COA carboxylase beta chain 5; fatty acid | 97.59 | |
| 1x0u_A | 522 | Hypothetical methylmalonyl-COA decarboxylase ALPH; | 97.52 | |
| 1vrg_A | 527 | Propionyl-COA carboxylase, beta subunit; TM0716, s | 97.42 | |
| 3u9r_B | 555 | MCC beta, methylcrotonyl-COA carboxylase, beta-sub | 97.38 | |
| 1x0u_A | 522 | Hypothetical methylmalonyl-COA decarboxylase ALPH; | 97.32 | |
| 1vrg_A | 527 | Propionyl-COA carboxylase, beta subunit; TM0716, s | 97.05 | |
| 1on3_A | 523 | Methylmalonyl-COA carboxyltransferase 12S subunit; | 96.69 | |
| 3gf3_A | 588 | Glutaconyl-COA decarboxylase subunit A; sodium ION | 96.59 | |
| 3iav_A | 530 | Propionyl-COA carboxylase complex B subunit; accas | 96.58 | |
| 2bzr_A | 548 | Propionyl-COA carboxylase beta chain 5; fatty acid | 96.52 | |
| 3n6r_B | 531 | Propionyl-COA carboxylase, beta subunit; protein c | 96.5 | |
| 1pix_A | 587 | Glutaconyl-COA decarboxylase A subunit; biotin-dep | 96.02 | |
| 3k8x_A | 758 | Acetyl-COA carboxylase; transferase, carboxyltrans | 95.88 | |
| 2x24_A | 793 | Acetyl-COA carboxylase; fatty acid biosynthesis, l | 95.32 | |
| 3u9r_B | 555 | MCC beta, methylcrotonyl-COA carboxylase, beta-sub | 95.32 | |
| 3gf3_A | 588 | Glutaconyl-COA decarboxylase subunit A; sodium ION | 93.74 | |
| 2x24_A | 793 | Acetyl-COA carboxylase; fatty acid biosynthesis, l | 91.63 | |
| 3k8x_A | 758 | Acetyl-COA carboxylase; transferase, carboxyltrans | 83.91 |
| >3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-63 Score=454.87 Aligned_cols=251 Identities=25% Similarity=0.422 Sum_probs=237.0
Q ss_pred eecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHH
Q psy503 42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLR 121 (333)
Q Consensus 42 ~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 121 (333)
.+.+++|++||||||+++|+||.+|+.+|.++|++++.|+++++|||||. |++||+|.|++++..... ....+.+.++
T Consensus 4 ~E~~dgVa~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~-~~~~~~~~~~ 81 (254)
T 3hrx_A 4 KERQDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGA-GRAFSAGQDLTEFGDRKP-DYEAHLRRYN 81 (254)
T ss_dssp EEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCGGGTTTSCC-CHHHHTHHHH
T ss_pred EEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCC-CCCcccCccHHHhcccch-hhHHHHHHHH
Confidence 44589999999999999999999999999999999999999999999999 899999999999765432 2345567788
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRL 201 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~ 201 (333)
.++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++|++||++
T Consensus 82 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltg~~ 161 (254)
T 3hrx_A 82 RVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPR 161 (254)
T ss_dssp HHHHHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCC
T ss_pred HHHHHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHhhcCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q psy503 202 VDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281 (333)
Q Consensus 202 isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (333)
|+|+||+++||||+|||+ +++.+++.+++++|+..+|.+++.+|++++ +....
T Consensus 162 i~A~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~~~---~~~~~-------------------- 214 (254)
T 3hrx_A 162 LSAEEALALGLVHRVVPA----EKLMEEALSLAKELAQGPTRAYALTKKLLL---ETYRL-------------------- 214 (254)
T ss_dssp EEHHHHHHHTSCSEEECG----GGHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HGGGS--------------------
T ss_pred cCHHHHHHCCCeEEecCc----HHHHHHHHHHHHHhhccchHHHHHHHHHHH---HHHcC--------------------
Confidence 999999999999999995 789999999999999999999999999999 77666
Q ss_pred CCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||++||+|||+|+|+||
T Consensus 215 ------------~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~Gr 254 (254)
T 3hrx_A 215 ------------SLTEALALEAVLQGQAGQTQDHEEGVRAFREKRPPRFQGR 254 (254)
T ss_dssp ------------CHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCCCC
T ss_pred ------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCCCC
Confidence 8999999999999999999999999999999999999997
|
| >4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-62 Score=453.94 Aligned_cols=260 Identities=26% Similarity=0.434 Sum_probs=233.8
Q ss_pred cCccceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC-
Q psy503 31 GRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN- 109 (333)
Q Consensus 31 ~~~~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~- 109 (333)
++-.+++.+++ ++||++||||||+++|+||.+|+.+|.++|++++.|+++++|||||. |++||+|.|++++....
T Consensus 11 GsM~e~il~~~---~~gVa~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~-G~~FcaG~Dl~~~~~~~~ 86 (274)
T 4fzw_C 11 GSMMEFILSHV---EKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGA-GRGFCAGQDLNDRNVDPT 86 (274)
T ss_dssp -----CEEEEE---ETTEEEEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCBCCC-------
T ss_pred ccccccEEEEE---ECCEEEEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCceeCCcChHhhhcccc
Confidence 34456676665 78999999999999999999999999999999999999999999999 89999999999875322
Q ss_pred ---HHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccc
Q psy503 110 ---EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRI 186 (333)
Q Consensus 110 ---~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~ 186 (333)
.+....+.+.++.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~ 166 (274)
T 4fzw_C 87 GPAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRV 166 (274)
T ss_dssp --CCCHHHHHHHTHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHCCCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHH
Confidence 12234455667889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCC
Q psy503 187 VGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQS 266 (333)
Q Consensus 187 iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~ 266 (333)
+|..+|++|+++|++|+|+||+++||||+|||+ +++.+++.++|++|+..+|.+++.+|++++ .....
T Consensus 167 vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~----- 234 (274)
T 4fzw_C 167 AGRARAMGLALLGNQLSAEQAHEWGMIWQVVDD----ETLADTAQQLARHLATQPTFGLGLIKQAIN---SAETN----- 234 (274)
T ss_dssp TCHHHHHHHHHHCCCEEHHHHHHTTSSSEEECG----GGHHHHHHHHHHHHTTSCHHHHHHHHHHHH---HHTSS-----
T ss_pred hhHHHHHHHHHhCCcCCHHHHHHCCCceEEeCh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhhhC-----
Confidence 999999999999999999999999999999995 789999999999999999999999999999 76665
Q ss_pred CCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 267 THSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||++||+|||+|+|+||
T Consensus 235 ---------------------------~l~~~l~~e~~~~~~~~~s~d~~Egv~AF~eKR~P~f~Gr 274 (274)
T 4fzw_C 235 ---------------------------TLDTQLDLERDYQRLAGRSADYREGVSAFLAKRSPQFTGK 274 (274)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHTTSHHHHHHHHHHHC-CCCCCCCC
T ss_pred ---------------------------CHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCCCC
Confidence 8999999999999999999999999999999999999997
|
| >4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-62 Score=448.00 Aligned_cols=248 Identities=33% Similarity=0.560 Sum_probs=233.4
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
.+++|++||||||+++|+||.+|+.+|.++|++++.|+++++|||||. |++||+|.|++++...... ..+.+....+
T Consensus 11 ~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~--~~~~~~~~~~ 87 (258)
T 4fzw_A 11 RQQRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGN-ARFFAAGADLNEMAEKDLA--ATLNDTRPQL 87 (258)
T ss_dssp EETTEEEEEEECGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECC-SSEEEECBCHHHHHTCCHH--HHHTCSHHHH
T ss_pred EECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCC-CCceeCCCchhhhccchhh--hHHHhHHHHH
Confidence 478999999999999999999999999999999999999999999998 8999999999988654432 2333455678
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|+++|++|+
T Consensus 88 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~i~ 167 (258)
T 4fzw_A 88 WARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKMVLSGESIT 167 (258)
T ss_dssp HHHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEE
T ss_pred HHHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHhCHHHHHHHHHcCCcCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+|||+ +++++++.+++++|+..+|.+++.+|++++ +....
T Consensus 168 a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~p~a~~~~K~~l~---~~~~~---------------------- 218 (258)
T 4fzw_A 168 AQQAQQAGLVSDVFPS----DLTLEYALQLASKMARHSPLALQAAKQALR---QSQEV---------------------- 218 (258)
T ss_dssp HHHHHHHTSCSEEECT----TTHHHHHHHHHHHHTTSCHHHHHHHHHHHH---HHTTS----------------------
T ss_pred HHHHHHCCCeeEEeCc----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhhcC----------------------
Confidence 9999999999999996 779999999999999999999999999999 77665
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|.+.+..++.++|++||++||+|||+|+|+||
T Consensus 219 ----------~l~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~Gr 258 (258)
T 4fzw_A 219 ----------ALQAGLAQERQLFTLLAATEDRHEGISAFLQKRTPDFKGR 258 (258)
T ss_dssp ----------CHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCCCC
T ss_pred ----------CHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCCCC
Confidence 8999999999999999999999999999999999999997
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-60 Score=438.31 Aligned_cols=258 Identities=46% Similarity=0.747 Sum_probs=242.2
Q ss_pred ceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHH
Q psy503 35 TQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIR 114 (333)
Q Consensus 35 ~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~ 114 (333)
+.+.++ ..+++|++||||||+++|+||.+|+.+|.++|++++.|+++++|||||.|+++||+|.|++++.....+...
T Consensus 8 ~~v~~~--~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 85 (265)
T 3kqf_A 8 QNISVD--YATPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQVR 85 (265)
T ss_dssp CSEEEE--CCSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCCHHHHH
T ss_pred CeEEEE--EeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccCHHHHH
Confidence 344544 137999999999999999999999999999999999999999999999944999999999998876666666
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHH
Q psy503 115 SFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKE 194 (333)
Q Consensus 115 ~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~ 194 (333)
.+...++.++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++
T Consensus 86 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~ 165 (265)
T 3kqf_A 86 HAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKE 165 (265)
T ss_dssp HHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhCHHHHHH
Confidence 77788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCC
Q psy503 195 LIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDG 274 (333)
Q Consensus 195 llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~ 274 (333)
++++|++++|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ +....
T Consensus 166 l~ltg~~~~a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~p~a~~~~K~~l~---~~~~~------------- 225 (265)
T 3kqf_A 166 LIYTGRRISAQEAKEYGLVEFVVPV----HLLEEKAIEIAEKIASNGPIAVRLAKEAIS---NGIQV------------- 225 (265)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECG----GGHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHTTS-------------
T ss_pred HHHcCCCCCHHHHHHCCCccEEeCH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhhcC-------------
Confidence 9999999999999999999999995 789999999999999999999999999999 76665
Q ss_pred CCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 275 QGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|+|||+|+|+|+
T Consensus 226 -------------------~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~g~ 265 (265)
T 3kqf_A 226 -------------------DLHTGLQMEKQAYEGVIHTKDRLEGLQAFKEKRTPMYKGE 265 (265)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTTSCCCCCCC
T ss_pred -------------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence 8999999999999999999999999999999999999986
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-59 Score=431.19 Aligned_cols=248 Identities=30% Similarity=0.518 Sum_probs=232.7
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCH-HHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-DQIRSFVSTLRYM 123 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~-~~~~~~~~~~~~l 123 (333)
+++|++||||||++ |+||.+|+.+|.++|+.++.|+++++|||||. |++||+|.|++++..... +....+....+.+
T Consensus 13 ~~~v~~itlnrp~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (261)
T 3pea_A 13 EDHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGE-GRFFSAGADIKEFTSVTEAKQATELAQLGQVT 90 (261)
T ss_dssp ETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCGGGSSTTCCHHHHHHHHHHHHHH
T ss_pred ECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCceeCCcCHHHHhhcCchhHHHHHHHHHHHH
Confidence 78999999999999 99999999999999999999999999999999 799999999999876543 3334455556778
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++
T Consensus 91 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltg~~~~ 170 (261)
T 3pea_A 91 FERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKACEMMLTSTPIT 170 (261)
T ss_dssp HHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEE
T ss_pred HHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ .....
T Consensus 171 a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~---------------------- 221 (261)
T 3pea_A 171 GAEALKWGLVNGVFAE----ETFLDDTLKVAKQIAGKSPATARAVLELLQ---TTKSS---------------------- 221 (261)
T ss_dssp HHHHHHHTSSSEEECG----GGHHHHHHHHHHHHHTSCHHHHHHHHHHHG---GGCCH----------------------
T ss_pred HHHHHHCCCccEecCH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhhcC----------------------
Confidence 9999999999999995 789999999999999999999999999999 76665
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|+|||+|+|+|+
T Consensus 222 ----------~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~P~f~g~ 261 (261)
T 3pea_A 222 ----------HYYEGVQREAQIFGEVFTSEDGREGVAAFLEKRKPSFSGR 261 (261)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCCCCC-
T ss_pred ----------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence 7999999999999999999999999999999999999985
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-59 Score=434.68 Aligned_cols=257 Identities=24% Similarity=0.366 Sum_probs=237.3
Q ss_pred cceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC----
Q psy503 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN---- 109 (333)
Q Consensus 34 ~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~---- 109 (333)
++.+.++. +++|++||||||+++|+||.+|+.+|.++|++++.|+++++|||||. |++||+|.|++++....
T Consensus 16 ~~~v~~~~---~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~ 91 (279)
T 3g64_A 16 WRHLRVEI---TDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGE-GRGFCSGGDVDEIIGATLSMD 91 (279)
T ss_dssp CSSEEEEE---ETTEEEEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEEC-SSCSBCCBCTTTTHHHHTTCC
T ss_pred CCeEEEEE---ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCceecCcCHHHHhhccccch
Confidence 44455554 68999999999999999999999999999999999999999999999 79999999999875421
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCcc-CChhhhhhcccccC
Q psy503 110 EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAII-PGAGGTQRLPRIVG 188 (333)
Q Consensus 110 ~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~-p~~g~~~~L~r~iG 188 (333)
......+.+.++.++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ |++|++++|++++|
T Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~vG 171 (279)
T 3g64_A 92 TARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVG 171 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHHhC
Confidence 22233556677889999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCC
Q psy503 189 IPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTH 268 (333)
Q Consensus 189 ~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~ 268 (333)
..++++++++|+.|+|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|+.++ .....
T Consensus 172 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~------- 237 (279)
T 3g64_A 172 LGHATRLLMLGDTVRAPEAERIGLISELTEE----GRADEAARTLARRLADGPALAHAQTKALLT---AELDM------- 237 (279)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHHTCCSEECCT----TCHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHTTS-------
T ss_pred HHHHHHHHHcCCCcCHHHHHHCCCCCEecCc----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhcC-------
Confidence 9999999999999999999999999999996 679999999999999999999999999999 76655
Q ss_pred CCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 269 SPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|+|||+|+|+|+
T Consensus 238 -------------------------~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~g~ 277 (279)
T 3g64_A 238 -------------------------PLAAAVELDASTQALLMTGEDYAEFHAAFTEKRPPKWQGR 277 (279)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCCCC
T ss_pred -------------------------CHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCCC
Confidence 8999999999999999999999999999999999999985
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-59 Score=430.14 Aligned_cols=247 Identities=34% Similarity=0.506 Sum_probs=231.8
Q ss_pred CCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 45 RPG-IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 45 ~~~-v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
+++ |++||||||+++|+||.+|+.+|.+++++++.|+++++|||||. |++||+|.|++++....... .+...++.+
T Consensus 16 ~~~gv~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~--~~~~~~~~~ 92 (263)
T 3moy_A 16 PVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGS-ERAFAAGADIAEMVTLTPHQ--ARERNLLSG 92 (263)
T ss_dssp CSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECC-SSEEEESBCHHHHTTCCHHH--HHHTTTTHH
T ss_pred eCCeEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCeeCCcChHHHhccCchh--HHHHHHHHH
Confidence 455 99999999999999999999999999999999999999999996 99999999999987655433 224456678
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++
T Consensus 93 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~ 172 (263)
T 3moy_A 93 WDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLT 172 (263)
T ss_dssp HHHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCHHHHHHHHHHCCEEE
T ss_pred HHHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhCHHHHHHHHHcCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ .....
T Consensus 173 a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~---------------------- 223 (263)
T 3moy_A 173 AEEAERVGLVSRIVPA----ADLLDEALAVAQRIARMSRPAGRAVKDAIN---EAFER---------------------- 223 (263)
T ss_dssp HHHHHHTTSCSEEECG----GGHHHHHHHHHHHHHHSCHHHHHHHHHHHH---HTTTS----------------------
T ss_pred HHHHHHCCCccEecCc----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhhcC----------------------
Confidence 9999999999999995 789999999999999999999999999999 76665
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|+|||+|+|+|+
T Consensus 224 ----------~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~g~ 263 (263)
T 3moy_A 224 ----------PLSAGMRYERDAFYAMFDTHDQTEGMTAFLEKRTPEFTDR 263 (263)
T ss_dssp ----------CHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCCCC
T ss_pred ----------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCC
Confidence 8999999999999999999999999999999999999986
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-59 Score=429.12 Aligned_cols=253 Identities=27% Similarity=0.416 Sum_probs=230.8
Q ss_pred eEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc---CHHH
Q psy503 36 QIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQ 112 (333)
Q Consensus 36 ~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~---~~~~ 112 (333)
.+.++. +++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||. |++||+|.|++++... ....
T Consensus 5 ~v~~~~---~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~ 80 (268)
T 3i47_A 5 DLLYEI---QDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKAN-GKHFSAGADLTWMQSMANFTEEE 80 (268)
T ss_dssp SEEEEE---ETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEEC-SSCSBCSBCHHHHHHHHTCCHHH
T ss_pred EEEEEE---ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECC-CCCeeCCCChhhhhccccccHHH
Confidence 345543 78999999999999999999999999999999999999999999999 7999999999987542 2233
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHH
Q psy503 113 IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192 (333)
Q Consensus 113 ~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a 192 (333)
.......++.++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|++++|..++
T Consensus 81 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~A 159 (268)
T 3i47_A 81 NLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISP-YVVRAIGERAA 159 (268)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHH-HHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHH-HHHHHhCHHHH
Confidence 33455677889999999999999999999999999999999999999999999999999999999887 78999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCC
Q psy503 193 KELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGR 272 (333)
Q Consensus 193 ~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~ 272 (333)
++|+++|++|+|+||+++||||+|||+ +++.+++.++|++|+..+|.+++.+|++++ .....
T Consensus 160 ~~llltg~~i~A~eA~~~GLV~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~----------- 221 (268)
T 3i47_A 160 KMLFMSAEVFDATRAYSLNLVQHCVPD----DTLLEFTLKYASQISNNAPEAVKNSKQLAQ---YVANK----------- 221 (268)
T ss_dssp HHHHHHCCEEEHHHHHHTTSCSEEECG----GGHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHTTC-----------
T ss_pred HHHHHcCCccCHHHHHHcCCCcEeeCh----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhhcC-----------
Confidence 999999999999999999999999995 789999999999999999999999999999 66554
Q ss_pred CCCCCCCCCCCCcccccccccCHHH-HHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 273 DGQGSKGGESKGTENQNREFQGRYS-GMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
++++ .++.|...+..++.++|++||+++|+|||+|+|++
T Consensus 222 ---------------------~l~~~~~~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~~ 261 (268)
T 3i47_A 222 ---------------------KIDEELVRYTASLIAHKRVSDEGQEGLKAFLNKEIPNWNE 261 (268)
T ss_dssp ---------------------CCSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHTCCCTTC-
T ss_pred ---------------------ChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence 6666 68899999999999999999999999999999986
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-59 Score=431.50 Aligned_cols=254 Identities=31% Similarity=0.531 Sum_probs=233.0
Q ss_pred ceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHH
Q psy503 35 TQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIR 114 (333)
Q Consensus 35 ~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~ 114 (333)
+.+.++. +++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||. |++||+|.|++++.......
T Consensus 25 ~~v~~~~---~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~-- 98 (278)
T 3h81_A 25 ETILVER---DQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGS-AKAFAAGADIKEMADLTFAD-- 98 (278)
T ss_dssp SSEEEEE---ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECC-SSEEECCBCSHHHHTCCHHH--
T ss_pred CeEEEEE---ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECC-CCCeecCcCHHHHhccChhh--
Confidence 3355544 68899999999999999999999999999999999999999999996 89999999999987654433
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHH
Q psy503 115 SFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKE 194 (333)
Q Consensus 115 ~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~ 194 (333)
.....+...+.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++
T Consensus 99 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~ 178 (278)
T 3h81_A 99 AFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMD 178 (278)
T ss_dssp HHHHTTTGGGHHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhCHHHHHH
Confidence 22222223377899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCC
Q psy503 195 LIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDG 274 (333)
Q Consensus 195 llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~ 274 (333)
++++|++++|+||+++||||+|+|+ +++++++.++|++|+..+|.+++.+|++++ +....
T Consensus 179 l~ltG~~~~A~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~p~a~~~~K~~l~---~~~~~------------- 238 (278)
T 3h81_A 179 LILTGRTMDAAEAERSGLVSRVVPA----DDLLTEARATATTISQMSASAARMAKEAVN---RAFES------------- 238 (278)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECG----GGHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HTTTS-------------
T ss_pred HHHhCCCcCHHHHHHCCCccEEeCh----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhcC-------------
Confidence 9999999999999999999999995 779999999999999999999999999999 76665
Q ss_pred CCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 275 QGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|+|||+|+|+|+
T Consensus 239 -------------------~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~f~g~ 278 (278)
T 3h81_A 239 -------------------SLSEGLLYERRLFHSAFATEDQSEGMAAFIEKRAPQFTHR 278 (278)
T ss_dssp -------------------CHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCCCC
T ss_pred -------------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence 8999999999999999999999999999999999999986
|
| >3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-59 Score=433.50 Aligned_cols=250 Identities=28% Similarity=0.380 Sum_probs=228.9
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCH-------HHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-------DQIRSF 116 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~-------~~~~~~ 116 (333)
.+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++..... .....+
T Consensus 30 ~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 108 (290)
T 3sll_A 30 PRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGA-GKGFCSGADQKSAGPIPHIGGLTQPTIALRS 108 (290)
T ss_dssp EETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEES-TTCSBCC------CCCSSCTTCCHHHHHHHH
T ss_pred EECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECC-CCCeeCCcChHHHhcccccccccchhHHHHH
Confidence 479999999999999999999999999999999999999999999999 799999999998765321 123456
Q ss_pred HHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCC-hhhhhhcccccCHHHHHHH
Q psy503 117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPG-AGGTQRLPRIVGIPLAKEL 195 (333)
Q Consensus 117 ~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~-~g~~~~L~r~iG~~~a~~l 195 (333)
...++.++.+|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+ +|++++|++++|..+++++
T Consensus 109 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r~vG~~~A~~l 188 (290)
T 3sll_A 109 MELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIGTSRASDI 188 (290)
T ss_dssp HHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHHHHhCHHHHHHH
Confidence 677889999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCc-ccCCCCCCCCCCCC
Q psy503 196 IYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQ-YRDGQSTHSPGRDG 274 (333)
Q Consensus 196 lltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~-~~~~~~~~~~~~~~ 274 (333)
+++|++|+|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ .... .
T Consensus 189 lltG~~i~A~eA~~~GLV~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~~------------- 248 (290)
T 3sll_A 189 MLTGRDVDADEAERIGLVSRKVAS----ESLLEECYAIGERIAGFSRPGIELTKRTIW---SGLDAA------------- 248 (290)
T ss_dssp HHHCCCEEHHHHHHHTSSSEEECG----GGHHHHHHHHHHHHHHSCHHHHHHHHHHHH---HHHTCS-------------
T ss_pred HHcCCCCCHHHHHHCCCccEEeCh----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhcccC-------------
Confidence 999999999999999999999995 789999999999999999999999999999 7665 5
Q ss_pred CCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHh-cCccHHHHHHHHhccCCCCCCCC
Q psy503 275 QGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVI-RTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~-~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++ .++|++||+++|+|||+|+|+|+
T Consensus 249 -------------------~l~~~l~~e~~~~~~~~~~s~d~~eg~~AFlekR~P~f~g~ 289 (290)
T 3sll_A 249 -------------------SLESHMHQEGLGQLYVRLLTDNFEEATAARKEKRPAEFRDK 289 (290)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTTSCCCCCSC
T ss_pred -------------------CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCCC
Confidence 89999999999999999 99999999999999999999985
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-58 Score=424.99 Aligned_cols=243 Identities=24% Similarity=0.391 Sum_probs=228.7
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|++||||||+++|++|.+|+.+|.++|++++.|+++++|||+|. |++||+|.|++++.. . .+...++.++
T Consensus 13 ~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~---~---~~~~~~~~~~ 85 (255)
T 3p5m_A 13 DGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGA-GRAFCSGGDLTGGDT---A---GAADAANRVV 85 (255)
T ss_dssp ETTEEEEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCEECC---CH---H---HHHHHHHHHH
T ss_pred ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECC-CCCccCCCChhhhcc---h---HHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999 799999999998762 1 4556778899
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCH
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDS 204 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa 204 (333)
.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|
T Consensus 86 ~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a 165 (255)
T 3p5m_A 86 RAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISA 165 (255)
T ss_dssp HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHHHHHHHHHCCCEEH
T ss_pred HHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q psy503 205 TEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284 (333)
Q Consensus 205 ~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (333)
+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ +....
T Consensus 166 ~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~----------------------- 215 (255)
T 3p5m_A 166 ATAFEWGMISHITSA----DEYESVLTDVLRSVSGGPTLAFGWTKRALA---AATLA----------------------- 215 (255)
T ss_dssp HHHHHTTSCSEECCT----TCHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHHCT-----------------------
T ss_pred HHHHHCCCCCEeeCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhhcC-----------------------
Confidence 999999999999996 679999999999999999999999999999 66655
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 285 ~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|+|||+|+|+|+
T Consensus 216 ---------~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~g~ 255 (255)
T 3p5m_A 216 ---------ELEPVQAIEAEGQLALVETADFREGARAFRERRTPNFRGH 255 (255)
T ss_dssp ---------THHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCCCC
T ss_pred ---------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence 7999999999999999999999999999999999999985
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-59 Score=433.68 Aligned_cols=254 Identities=25% Similarity=0.419 Sum_probs=235.3
Q ss_pred cceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHH
Q psy503 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQI 113 (333)
Q Consensus 34 ~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~ 113 (333)
++.+.++. +++|++||||||+++|+||.+|+.+|.++|+++ |+++++|||||. |++||+|.|++++........
T Consensus 15 ~~~v~~~~---~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~--d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~ 88 (275)
T 3hin_A 15 PSTLVVDT---VGPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGI-GDHFSAGLDLSELRERDATEG 88 (275)
T ss_dssp GGGEEEEE---ETTEEEEEECCGGGTTCBCHHHHHHHHHHTSSC--CTTCCEEEEEES-SSCSBCCBCGGGCCCCCHHHH
T ss_pred CCeEEEEE---ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHh--CcCceEEEEECC-CCCccCCCCHHHHhccChhhH
Confidence 34566554 689999999999999999999999999999999 679999999999 789999999999877655555
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHH
Q psy503 114 RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAK 193 (333)
Q Consensus 114 ~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~ 193 (333)
..+...++.++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+++
T Consensus 89 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~ 168 (275)
T 3hin_A 89 LVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVARMA 168 (275)
T ss_dssp HHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHHH
Confidence 55667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCC
Q psy503 194 ELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRD 273 (333)
Q Consensus 194 ~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~ 273 (333)
+++++|++|+|+||+++||||+|||+ +++.+++.++|++|+..+|.+++.+|++++ +....
T Consensus 169 ~l~ltG~~i~A~eA~~~GLv~~vv~~----~~l~~~a~~~a~~ia~~~p~a~~~~K~~l~---~~~~~------------ 229 (275)
T 3hin_A 169 DMMLTGRVYSAAEGVVHGFSQYLIEN----GSAYDKALELGNRVAQNAPLTNFAVLQALP---MIAEA------------ 229 (275)
T ss_dssp HHHHHCCCEEHHHHHHHTSCSEEESS----SCHHHHHHHHHHHHTTSCHHHHHHHHTHHH---HHHHS------------
T ss_pred HHHHcCCCCCHHHHHHCCCCCEEeCh----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhhcC------------
Confidence 99999999999999999999999996 679999999999999999999999999999 76665
Q ss_pred CCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 274 GQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
+++++++.|...+..++.++|++||+++|+|||+|+|++
T Consensus 230 --------------------~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~~ 268 (275)
T 3hin_A 230 --------------------NPQTGLLMESLMATVAQSDQEAKTRIRAFLDHKTAKVRE 268 (275)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHC--
T ss_pred --------------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCC
Confidence 899999999999999999999999999999999999975
|
| >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-58 Score=428.59 Aligned_cols=263 Identities=47% Similarity=0.802 Sum_probs=240.4
Q ss_pred eEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHH
Q psy503 36 QIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRS 115 (333)
Q Consensus 36 ~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~ 115 (333)
++...+.+.+++|++||||||+++|++|.+|+.+|.++|+.++.|+++++|||+|.|+++||+|.|++++.....+....
T Consensus 10 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 89 (272)
T 1hzd_A 10 LRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGP 89 (272)
T ss_dssp EEEEECCGGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHH
T ss_pred EEEEecccccCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhccChHHHHH
Confidence 33444455688999999999999999999999999999999999999999999998558999999999986654444455
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHH
Q psy503 116 FVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKEL 195 (333)
Q Consensus 116 ~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~l 195 (333)
+...+++++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+++++
T Consensus 90 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l 169 (272)
T 1hzd_A 90 FVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKEL 169 (272)
T ss_dssp HHHHHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHHhCHHHHHHH
Confidence 56677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCC
Q psy503 196 IYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQ 275 (333)
Q Consensus 196 lltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~ 275 (333)
+++|++|+|+||+++||||+|+|+++..+++.+++.+++++|+..+|.+++.+|++++ .....
T Consensus 170 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~~~~~a~~~a~~la~~~p~a~~~~K~~l~---~~~~~-------------- 232 (272)
T 1hzd_A 170 IFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAIN---QGMEV-------------- 232 (272)
T ss_dssp HHHTCEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSCHHHHHHHHHHHH---HHHTS--------------
T ss_pred HHcCCcCCHHHHHHCCCcceecChhhhhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHhcC--------------
Confidence 9999999999999999999999986555567888999999999999999999999998 66555
Q ss_pred CCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 276 GSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|++||+|+|+|+
T Consensus 233 ------------------~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~~~g~ 272 (272)
T 1hzd_A 233 ------------------DLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYKGE 272 (272)
T ss_dssp ------------------CHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCCCCCC
T ss_pred ------------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCCCC
Confidence 7899999999999999999999999999999999999985
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-59 Score=433.73 Aligned_cols=249 Identities=31% Similarity=0.460 Sum_probs=216.5
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|++||||||+++|+||.+|+.+|.++|++++.|+++++|||+|. |++||+|.|++++..............++.++
T Consensus 27 ~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 105 (278)
T 4f47_A 27 RGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGA-GGYFCAGMDLKAATKKPPGDSFKDGSYDPSRI 105 (278)
T ss_dssp ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTCCC----------------------CTTCB
T ss_pred ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECC-CCcccCCcChHhhhccchhhhHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999 78999999999876543221111111233455
Q ss_pred HHHh---cCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCC
Q psy503 125 CQLE---SIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRL 201 (333)
Q Consensus 125 ~~l~---~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~ 201 (333)
..+. .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..++++++++|+.
T Consensus 106 ~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltg~~ 185 (278)
T 4f47_A 106 DALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRH 185 (278)
T ss_dssp TTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHHHHSCHHHHHHHHHHCCC
T ss_pred HHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCc
Confidence 5666 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q psy503 202 VDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281 (333)
Q Consensus 202 isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (333)
|+|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ +....
T Consensus 186 ~~a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~-------------------- 238 (278)
T 4f47_A 186 ITAAEAKEMGLVGHVVPD----GQALTKALEIAEIIAANGPLAVQAILRTIR---ETEGM-------------------- 238 (278)
T ss_dssp EEHHHHHHTTSCSEEECT----TCHHHHHHHHHHHHHHSCHHHHHHHHHHHH---HTTTS--------------------
T ss_pred CCHHHHHHCCCceEeeCh----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhccC--------------------
Confidence 999999999999999996 679999999999999999999999999999 76665
Q ss_pred CCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|+|||+|+|+|+
T Consensus 239 ------------~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~ekr~p~f~g~ 278 (278)
T 4f47_A 239 ------------HENEAFKIDTRIGIEVFLSDDAKEGPQAFAQKRKPNFQNR 278 (278)
T ss_dssp ------------CHHHHHHHHHHHHGGGGGSSHHHHHHHHHHTTSCCCCCCC
T ss_pred ------------CHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCCC
Confidence 8999999999999999999999999999999999999986
|
| >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-58 Score=424.87 Aligned_cols=249 Identities=26% Similarity=0.330 Sum_probs=232.2
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC----HHHH-HHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN----EDQI-RSFVST 119 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~----~~~~-~~~~~~ 119 (333)
+++|++||||||+++|+||.+|+.+|.++|++++.|+++++|||||. |++||+|.|++++.... .... ..+...
T Consensus 10 ~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (269)
T 1nzy_A 10 EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGA-EDAFCAGFYLREIPLDKGVAGVRDHFRIAALW 88 (269)
T ss_dssp ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECC-CCCcccCcCHHHHhhcccccChHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999 79999999999886542 1121 344556
Q ss_pred HHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcC
Q psy503 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTG 199 (333)
Q Consensus 120 ~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG 199 (333)
+++++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|
T Consensus 89 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg 168 (269)
T 1nzy_A 89 WHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTN 168 (269)
T ss_dssp HHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHHhhHHHHHHHHHcC
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy503 200 RLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKG 279 (333)
Q Consensus 200 ~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (333)
++|+|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ .....
T Consensus 169 ~~~~a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~p~a~~~~K~~l~---~~~~~------------------ 223 (269)
T 1nzy_A 169 RTLYPEEAKDWGLVSRVYPK----DEFREVAWKVARELAAAPTHLQVMAKERFH---AGWMQ------------------ 223 (269)
T ss_dssp CCBCHHHHHHHTSCSCEECH----HHHHHHHHHHHHHHHHSCHHHHHHHHHHHH---HHTTS------------------
T ss_pred CCCCHHHHHHCCCccEeeCH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhhcC------------------
Confidence 99999999999999999994 889999999999999999999999999999 66655
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 280 GESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|++||+|+|+++
T Consensus 224 --------------~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~f~~~ 263 (269)
T 1nzy_A 224 --------------PVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADRPQV 263 (269)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTTCCSS
T ss_pred --------------CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCCC
Confidence 7899999999999999999999999999999999999874
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-59 Score=439.00 Aligned_cols=258 Identities=25% Similarity=0.387 Sum_probs=185.9
Q ss_pred ccceEEEEeeecCC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcc---c
Q psy503 33 KLTQIIYHNSPERP-GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLT---L 108 (333)
Q Consensus 33 ~~~~~~~~~~~~~~-~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~---~ 108 (333)
+++.+.++. ++ +|++||||||+++|+||.+|+.+|.++|++++.|+++++|||||. |++||+|.|++++.. .
T Consensus 27 ~~~~v~~~~---~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-G~~FcaG~Dl~~~~~~~~~ 102 (298)
T 3qre_A 27 AQDAVLYEA---TPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGR-GRGFCAGAYLGSADAAAGY 102 (298)
T ss_dssp -CCSEEEEE---CTTSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTCSEECC-----------
T ss_pred CCCeEEEEE---eCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCcccCcCHHHHhhcccc
Confidence 355566654 56 999999999999999999999999999999999999999999999 799999999998764 2
Q ss_pred CHH-----HHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhc
Q psy503 109 NED-----QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRL 183 (333)
Q Consensus 109 ~~~-----~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L 183 (333)
... ....+...++.++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L 182 (298)
T 3qre_A 103 DKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWIL 182 (298)
T ss_dssp ------------------CCTTGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHH
T ss_pred ccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHH
Confidence 111 112222334567778999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhc-CHHHHHHHHHHhcCCCCCCccc
Q psy503 184 PRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHN-GPIAVRMAKRSIDGPGRGTQYR 262 (333)
Q Consensus 184 ~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~-~~~a~~~~K~~l~~~~~~~~~~ 262 (333)
+|++|..++++++++|++|+|+||+++||||+|+|+ +++++++.++|++|+.. +|.+++.+|++++ +....
T Consensus 183 ~r~vG~~~A~ellltg~~i~A~eA~~~GLV~~vv~~----~~l~~~a~~~A~~la~~~~p~a~~~~K~~l~---~~~~~- 254 (298)
T 3qre_A 183 PRLTSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTP----EQLMPRALEYAEDIARYCSPSSMAVIKRQVY---GDATR- 254 (298)
T ss_dssp HHHSCHHHHHHHHHHCCEEEHHHHHHTTSCSEEECG----GGHHHHHHHHHHHHHHHSCHHHHHHHHHHHH---GGGGC-
T ss_pred HHhcCHHHHHHHHHcCCCCCHHHHHHcCCCeEecCH----HHHHHHHHHHHHHHHccCCHHHHHHHHHHHH---hhhcC-
Confidence 999999999999999999999999999999999995 78999999999999998 9999999999999 76655
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 263 DGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++++++..|...+..++.++|++||+++|+|||+|+|+++
T Consensus 255 -------------------------------~l~~~~~~e~~~~~~~~~s~d~~Egv~AF~ekR~P~f~~~ 294 (298)
T 3qre_A 255 -------------------------------DVVEATSHAEVLLREAMPRPDVIEGIVSFLEKRPPQFPSL 294 (298)
T ss_dssp -----------------------------------------------------------------------
T ss_pred -------------------------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence 7888899999999999999999999999999999999874
|
| >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-58 Score=421.45 Aligned_cols=247 Identities=32% Similarity=0.578 Sum_probs=229.5
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|++||||||+++|++|.+|+.+|.++|++++.|+++++|||||. |++||+|.|++++...... ...+...+ +++
T Consensus 12 ~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~-~~~~~~~~-~~~ 88 (258)
T 2pbp_A 12 EGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGR-GRAFAAGADIQEMAKDDPI-RLEWLNQF-ADW 88 (258)
T ss_dssp ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTEEECCCCHHHHHTCCHH-HHHHHCTT-HHH
T ss_pred eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECC-CCCccCCcCHHHHhcccch-hHHHHHHH-HHH
Confidence 68999999999999999999999999999999999999999999998 8999999999987654321 22233334 677
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCH
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDS 204 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa 204 (333)
..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..++++++++|+.|+|
T Consensus 89 ~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a 168 (258)
T 2pbp_A 89 DRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSA 168 (258)
T ss_dssp HHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEH
T ss_pred HHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCcccHHHHHHHHhCHHHHHHHHHcCCccCH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q psy503 205 TEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284 (333)
Q Consensus 205 ~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (333)
+||+++||||+|+|+ +++++++.++|++|+..+|.+++.+|++++ .....
T Consensus 169 ~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~----------------------- 218 (258)
T 2pbp_A 169 KEAEQLGIVNRVVSP----ELLMEETMRLAGRLAEQPPLALRLIKEAVQ---KAVDY----------------------- 218 (258)
T ss_dssp HHHHHTTSCSEEECG----GGHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHHHS-----------------------
T ss_pred HHHHHcCCcceeeCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhhcC-----------------------
Confidence 999999999999995 789999999999999999999999999999 66655
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 285 ~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|.+.+..++.++|++||+++|++||+|+|+|+
T Consensus 219 ---------~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~~~ 258 (258)
T 2pbp_A 219 ---------PLYEGMQFERKNFYLLFASEDQKEGMAAFLEKRKPRFQGK 258 (258)
T ss_dssp ---------CHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCCCC
T ss_pred ---------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCCCCC
Confidence 7899999999999999999999999999999999999985
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-57 Score=420.00 Aligned_cols=253 Identities=30% Similarity=0.510 Sum_probs=233.5
Q ss_pred eEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe-CCCCccccCCCchhhcccCHHHHH
Q psy503 36 QIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRS-LVKDVFCAGADLKHRLTLNEDQIR 114 (333)
Q Consensus 36 ~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g-~~g~~F~~G~Dl~~~~~~~~~~~~ 114 (333)
.+.++. +++|++|||||| ++|++|.+|+.+|.++|++++.|+++++|||+| . |++||+|.|++++.... ....
T Consensus 10 ~i~~~~---~~~v~~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~-g~~F~aG~Dl~~~~~~~-~~~~ 83 (265)
T 2ppy_A 10 YLTVFK---EDGIAEIHLHIN-KSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDV-PKFFSAGADINFLRSAD-PRFK 83 (265)
T ss_dssp SEEEEE---ETTEEEEEECSS-TTCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECS-TTEEECCBCHHHHTTSC-HHHH
T ss_pred eEEEEe---eCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCC-CCeeeeCcCHHHHhccc-hhHH
Confidence 344443 689999999999 999999999999999999999999999999999 6 89999999999886522 2233
Q ss_pred HHHHHH-HHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCe-EEeccccccCccCChhhhhhcccccCHHHH
Q psy503 115 SFVSTL-RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV-RMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192 (333)
Q Consensus 115 ~~~~~~-~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a-~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a 192 (333)
.+...+ ++++.++..+||||||+|||+|+|||++|+++||+|||++++ +|++||+++|++|++|++++|++++|..++
T Consensus 84 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 163 (265)
T 2ppy_A 84 TQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRA 163 (265)
T ss_dssp HHHHHHHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHHhCHHHH
Confidence 444556 788899999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCC
Q psy503 193 KELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGR 272 (333)
Q Consensus 193 ~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~ 272 (333)
++++++|++++|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|++++ .....
T Consensus 164 ~~l~ltg~~~~a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~----------- 225 (265)
T 2ppy_A 164 LDMNITGETITPQEALEIGLVNRVFPQ----AETRERTREYARKLANSATYAVSNIKLAIM---NGKEM----------- 225 (265)
T ss_dssp HHHHHHCCCBCHHHHHHHTSSSEEECG----GGHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHTTS-----------
T ss_pred HHHHHhCCccCHHHHHHCCCcceecCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhhcC-----------
Confidence 999999999999999999999999995 789999999999999999999999999999 66655
Q ss_pred CCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 273 DGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|++||+|+|+|+
T Consensus 226 ---------------------~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~~~~~ 265 (265)
T 2ppy_A 226 ---------------------PLNVAIRYEGELQNLLFRSEDAKEGLSAFLEKRQPNWKGI 265 (265)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCCCC
T ss_pred ---------------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence 7899999999999999999999999999999999999985
|
| >3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-58 Score=424.62 Aligned_cols=253 Identities=31% Similarity=0.447 Sum_probs=224.9
Q ss_pred ceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHH
Q psy503 35 TQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIR 114 (333)
Q Consensus 35 ~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~ 114 (333)
+.+.++. +++|++||||||+++|++|.+|+.+|.++|+.++.|+++++|||||. |++||+|.|++ ... .....
T Consensus 9 ~~v~~~~---~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~-~~~--~~~~~ 81 (265)
T 3rsi_A 9 RELLVER---DGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGA-GSAYCVGGDLS-DGW--MVRDG 81 (265)
T ss_dssp CCEEEEE---ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTCSEECC--------------
T ss_pred CcEEEEE---ECCEEEEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCcccCcCCC-ccc--ccchH
Confidence 3455543 68999999999999999999999999999999999999999999999 78999999998 221 11111
Q ss_pred HHHHHHHH-HHHHH-h--cCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHH
Q psy503 115 SFVSTLRY-MTCQL-E--SIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIP 190 (333)
Q Consensus 115 ~~~~~~~~-l~~~l-~--~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~ 190 (333)
.+....+. ++..+ . .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 161 (265)
T 3rsi_A 82 SAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPYT 161 (265)
T ss_dssp ---CCCHHHHHHHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHSCHH
T ss_pred HHHHHhHHHHHHHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHHHHhCHH
Confidence 22223355 78888 8 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCC
Q psy503 191 LAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSP 270 (333)
Q Consensus 191 ~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~ 270 (333)
++++++++|++++|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ +....
T Consensus 162 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~--------- 225 (265)
T 3rsi_A 162 KAMEMILTGEPLTAFEAYHFGLVGHVVPA----GTALDKARSLADRIVRNGPLAVRNAKEAIV---RSGWL--------- 225 (265)
T ss_dssp HHHHHHHHCCCEEHHHHHHTTSCSEEEST----TCHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHTTC---------
T ss_pred HHHHHHHcCCCCCHHHHHHCCCccEecCh----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhhcC---------
Confidence 99999999999999999999999999996 679999999999999999999999999999 76665
Q ss_pred CCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 271 GRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|+|||+|+|+|+
T Consensus 226 -----------------------~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~g~ 265 (265)
T 3rsi_A 226 -----------------------AEEDARAIEARLTRPVITSADAREGLAAFKEKREARFTGR 265 (265)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTSCCCCCCC
T ss_pred -----------------------CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCCC
Confidence 8999999999999999999999999999999999999986
|
| >3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-59 Score=433.56 Aligned_cols=256 Identities=27% Similarity=0.410 Sum_probs=231.7
Q ss_pred cceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHH
Q psy503 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQI 113 (333)
Q Consensus 34 ~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~ 113 (333)
++.+.++. +++|++||||||+++|++|.+|+.+|.++|+.++.|+++++|||||. |++||+|.|++++........
T Consensus 6 ~~~v~~~~---~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~ 81 (265)
T 3qxz_A 6 VTELHEEI---RDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGA-PPAFCSGAQISAAAETFAAPR 81 (265)
T ss_dssp CCEEEEEE---ETTEEEEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTEEECCBCSTTCTTCCCCCC
T ss_pred cceEEEEE---ECCEEEEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEECC-CCccccCcChHHHhhccchhH
Confidence 34455544 78999999999999999999999999999999999999999999999 799999999998765322111
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHH
Q psy503 114 RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAK 193 (333)
Q Consensus 114 ~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~ 193 (333)
..++.. +.++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+++
T Consensus 82 ~~~~~~-~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~ 160 (265)
T 3qxz_A 82 NPDFSA-SPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAVAA 160 (265)
T ss_dssp SSCCCS-CCSSSCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHH
Confidence 112222 5677788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhc-CHHHHHHHHHHhcCCCCCCcccCCCCCCCCCC
Q psy503 194 ELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHN-GPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGR 272 (333)
Q Consensus 194 ~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~-~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~ 272 (333)
+++++|+.++|+||+++||||+|+|+ +++.+++.++|++|+.. +|.+++.+|++++ +....
T Consensus 161 ~l~ltg~~~~A~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~p~a~~~~K~~l~---~~~~~----------- 222 (265)
T 3qxz_A 161 ELLLTGASFSAQRAVETGLANRCLPA----GKVLGAALRMAHDIATNVAPESAALTKRLLW---DAQMT----------- 222 (265)
T ss_dssp HHHHHCCCBCHHHHHHHTSCSEEECH----HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH---HHHHH-----------
T ss_pred HHHHcCCCcCHHHHHHCCCccEeeCH----HHHHHHHHHHHHHHHccCCHHHHHHHHHHHH---HhhcC-----------
Confidence 99999999999999999999999994 88999999999999999 9999999999999 66555
Q ss_pred CCCCCCCCCCCCcccccccccCHHHH--HHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 273 DGQGSKGGESKGTENQNREFQGRYSG--MEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++ ++.|...+..++.++|++||+++|+|||+|+|+|+
T Consensus 223 ---------------------~l~~~~~l~~e~~~~~~~~~s~d~~egi~Af~ekr~P~f~g~ 264 (265)
T 3qxz_A 223 ---------------------GMSAAEVAARETADHLRLMGSQDAAEGPRAFIDGRPPRWAGQ 264 (265)
T ss_dssp ---------------------TCCHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHTSCCCCCCC
T ss_pred ---------------------CHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHcCCCCCCCCC
Confidence 67788 99999999999999999999999999999999985
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-57 Score=424.88 Aligned_cols=247 Identities=27% Similarity=0.397 Sum_probs=233.6
Q ss_pred CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcc-cCHHHHHHHHHHHHHHH
Q psy503 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLT-LNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 46 ~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~-~~~~~~~~~~~~~~~l~ 124 (333)
++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++.. ...+....+...++.++
T Consensus 34 ~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 112 (286)
T 3myb_A 34 RGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAAS-GKAFCAGHDLKEMRAEPSREYYEKLFARCTDVM 112 (286)
T ss_dssp TSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEEC-SSCSBCCBCHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECC-CCCccCCcChhhhhccccHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999 799999999999875 23344566777888999
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCH
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDS 204 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa 204 (333)
.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ ++|++++|++++|..++++++++|++|+|
T Consensus 113 ~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~-~~g~~~~L~r~vG~~~A~~llltG~~i~A 191 (286)
T 3myb_A 113 LAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLF-CSTPGVALSRNVGRKAAFEMLVTGEFVSA 191 (286)
T ss_dssp HHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCC-CHHHHHHHTTTSCHHHHHHHHHHCCCEEH
T ss_pred HHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEECcccccCCC-CchHHHHHHHHcCHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999 78889999999999999999999999999
Q ss_pred HHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q psy503 205 TEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284 (333)
Q Consensus 205 ~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (333)
+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ +....
T Consensus 192 ~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~p~a~~~~K~~l~---~~~~~----------------------- 241 (286)
T 3myb_A 192 DDAKGLGLVNRVVAP----KALDDEIEAMVSKIVAKPRAAVAMGKALFY---RQIET----------------------- 241 (286)
T ss_dssp HHHHHHTSCSEEECG----GGHHHHHHHHHHHHHHSCHHHHHHHHHHHH---HHHTS-----------------------
T ss_pred HHHHHCCCCcEecCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhhcC-----------------------
Confidence 999999999999995 789999999999999999999999999999 66655
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 285 ~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|+|||+|+|+|+
T Consensus 242 ---------~l~~~l~~e~~~~~~~~~s~d~~egi~aFlekr~p~f~g~ 281 (286)
T 3myb_A 242 ---------DIESAYADAGTTMACNMMDPSALEGVSAFLEKRRPEWHTP 281 (286)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCCCCCC
T ss_pred ---------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCCCCC
Confidence 8999999999999999999999999999999999999985
|
| >4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-57 Score=435.92 Aligned_cols=257 Identities=25% Similarity=0.398 Sum_probs=229.7
Q ss_pred cceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc---CH
Q psy503 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NE 110 (333)
Q Consensus 34 ~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~---~~ 110 (333)
++.+.+++ +++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||.|+++||+|.|++++... ..
T Consensus 8 ~e~vl~e~---~~~Va~itLnrP~~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~~ 84 (353)
T 4hdt_A 8 NEDVLVNV---EGGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKADG 84 (353)
T ss_dssp CCSEEEEE---ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTTS
T ss_pred CCcEEEEE---ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchhh
Confidence 34466665 7999999999999999999999999999999999999999999999966899999999987532 23
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHH
Q psy503 111 DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIP 190 (333)
Q Consensus 111 ~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~ 190 (333)
.....++...+.++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .
T Consensus 85 ~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~g-~ 163 (353)
T 4hdt_A 85 AEARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPG-K 163 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSST-T
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEeECceeecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhhh-H
Confidence 345667778889999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHH-------------------------------------
Q psy503 191 LAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRI------------------------------------- 233 (333)
Q Consensus 191 ~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~------------------------------------- 233 (333)
++++|++||++|+|+||+++||||+|||+ +++.+.+.++
T Consensus 164 ~a~~l~ltG~~i~A~eA~~~GLv~~vv~~----~~l~~~a~~la~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~f~~~~~ 239 (353)
T 4hdt_A 164 LGLHAALTGAPFSGADAIVMGFADHYVPH----DKIDEFTRAVIADGVDAALAAHAQEPPASPLAEQRSWIDECYTGDTV 239 (353)
T ss_dssp HHHHHHHHCCCBCHHHHHHHTSCSEECCG----GGHHHHHHHHHHHCHHHHHHHHCBCCCCCHHHHTHHHHHHHTTCSSH
T ss_pred HHHHHHhcCCCCCHHHHHHcCCCcEEeCH----HHHHHHHHHHHHhchhHHHHHhcccCCccchHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999999996 6666666554
Q ss_pred ------------------HHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCH
Q psy503 234 ------------------AEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGR 295 (333)
Q Consensus 234 ------------------a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (333)
++.|+.++|.+++.+|+.++ ++... .++
T Consensus 240 ~~i~~~L~~~~~~~a~~~a~~la~~sP~a~~~~k~~l~---~~~~~-------------------------------~sl 285 (353)
T 4hdt_A 240 ADIIAALRAHDAPAAGEAADLIATRSPIALSVTLESVR---RAAKL-------------------------------QSL 285 (353)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHTTSCHHHHHHHHHHHH---HHTTC-------------------------------CCH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhcCcHHHHHHHHHHH---HhccC-------------------------------CCH
Confidence 55688999999999999999 76654 279
Q ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHh--ccCCCCCCC
Q psy503 296 YSGMEWEGICYDRVIRTQDRVEGLKSFL--GKYKPVYKG 332 (333)
Q Consensus 296 ~~~l~~e~~~~~~~~~~~d~~egi~afl--ekr~p~~~~ 332 (333)
+++++.|...+..++.++|++||++||| |||+|+|+.
T Consensus 286 ~e~l~~E~~~~~~~~~s~D~~EGvrAfl~dekR~P~w~p 324 (353)
T 4hdt_A 286 EDTLRQEYRVSCASLKSHDLVEGIRAQLVDKDRNPKWRP 324 (353)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCCCSS
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHhhhhhCcCCCCCCCC
Confidence 9999999999999999999999999999 999999974
|
| >3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-59 Score=432.41 Aligned_cols=256 Identities=24% Similarity=0.324 Sum_probs=229.5
Q ss_pred ceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHH
Q psy503 35 TQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIR 114 (333)
Q Consensus 35 ~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~ 114 (333)
+.+.++. +++|++||||||+++|+||.+|+.+|.++|++++.|+++++|||||. |+.||+|.|++++.....+...
T Consensus 9 ~~v~~~~---~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~ 84 (265)
T 3swx_A 9 ETLRIRR---DGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGE-GPLFTAGLDLASVAAEIQGGAS 84 (265)
T ss_dssp SSEEEEE---ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCHHHHHHHHC--CC
T ss_pred ceEEEEE---ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECC-CCCcccCcChHHHhhcccchhH
Confidence 3455554 68999999999999999999999999999999999999999999999 6779999999987542111100
Q ss_pred HHHHHHHHHHHHH-hcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHH
Q psy503 115 SFVSTLRYMTCQL-ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAK 193 (333)
Q Consensus 115 ~~~~~~~~l~~~l-~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~ 193 (333)
.+...+.+++..+ ..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+++
T Consensus 85 ~~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~ 164 (265)
T 3swx_A 85 LTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWGNAM 164 (265)
T ss_dssp CCCTTCCCTTCCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhhHHHHH
Confidence 1112223445667 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCC
Q psy503 194 ELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRD 273 (333)
Q Consensus 194 ~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~ 273 (333)
+++++|++++|+||+++||||+|+|+ +++++++.++|++|+..+|.+++.+|++++ +....
T Consensus 165 ~l~ltg~~~~a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~p~a~~~~K~~l~---~~~~~------------ 225 (265)
T 3swx_A 165 RWMLTADTFDAVEAHRIGIVQEIVPV----GEHVDTAIAIAQTIARQAPLGVQATLRNAR---LAVRE------------ 225 (265)
T ss_dssp HHHTTCCCEEHHHHHHTTSCSEEEST----TCHHHHHHHHHHHHHHSCHHHHHHHHHHHH---HHHHH------------
T ss_pred HHHHcCCcCCHHHHHHcCCCCEecCh----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhhcC------------
Confidence 99999999999999999999999996 679999999999999999999999999999 76655
Q ss_pred CCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 274 GQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|+|||+|+|+|+
T Consensus 226 --------------------~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~g~ 265 (265)
T 3swx_A 226 --------------------GDAAAEEQLVPTVRELFTSEDATLGVQAFLSRTTAEFVGR 265 (265)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTCCCCCCCC
T ss_pred --------------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCCCC
Confidence 8999999999999999999999999999999999999986
|
| >3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-59 Score=430.35 Aligned_cols=253 Identities=22% Similarity=0.343 Sum_probs=225.1
Q ss_pred EEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCH------
Q psy503 37 IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE------ 110 (333)
Q Consensus 37 ~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~------ 110 (333)
+.++. +++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||. |++||+|.|++++.....
T Consensus 13 v~~~~---~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~ 88 (274)
T 3tlf_A 13 IKYEV---DGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGT-GRAFCSGADVKEIPEDGKVIYERP 88 (274)
T ss_dssp EEEEE---ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTEEECCBC--------------C
T ss_pred eEEEE---ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCC-CCCcccCcCHHHHhhccccccccc
Confidence 45443 68999999999999999999999999999999999999999999999 799999999998765322
Q ss_pred -HHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCH
Q psy503 111 -DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGI 189 (333)
Q Consensus 111 -~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~ 189 (333)
......+..++.++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| +|++++|++++|.
T Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p-~g~~~~L~r~vG~ 167 (274)
T 3tlf_A 89 YLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVA-GRELVRVSRVLPR 167 (274)
T ss_dssp TTCSGGGGSCCCTTCCCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCC-CHHHHHHTTTSCH
T ss_pred hhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCccc-chHHHHHHHHhCH
Confidence 00111122345677788999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHcCC--CCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCC
Q psy503 190 PLAKELIYTGR--LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQST 267 (333)
Q Consensus 190 ~~a~~llltG~--~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~ 267 (333)
.++++++++|+ +|+|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ .....
T Consensus 168 ~~A~~l~ltg~~~~~~A~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~------ 234 (274)
T 3tlf_A 168 SIALRMALMGKHERMSAQRAYELGLISEIVEH----DRLLERAHEIADIVNSNAPLAVRGTRLAIL---KGLNV------ 234 (274)
T ss_dssp HHHHHHHHHGGGCCEEHHHHHHHTSSSEEECG----GGHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHTTS------
T ss_pred HHHHHHHHcCCCCccCHHHHHHCCCCCeecCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHhcC------
Confidence 99999999999 9999999999999999995 789999999999999999999999999999 76665
Q ss_pred CCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 268 HSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|+|||+|+|+|+
T Consensus 235 --------------------------~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~g~ 274 (274)
T 3tlf_A 235 --------------------------PLHEAEILAETFRERVLRTEDAAEGPRAFVEKRQPNWQCR 274 (274)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCCCC
T ss_pred --------------------------CHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCCC
Confidence 8999999999999999999999999999999999999986
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-57 Score=419.10 Aligned_cols=247 Identities=28% Similarity=0.437 Sum_probs=225.1
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHH-HHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVS-TLRYM 123 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~-~~~~l 123 (333)
+++|++||||||+++|+||.+|+.+|.++|++++.|+++++|||||. |++||+|.|++++....... .+.. .++++
T Consensus 10 ~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~--~~~~~~~~~~ 86 (257)
T 2ej5_A 10 KGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGA-GRAFCAGEDLSGVTEEMDHG--DVLRSRYAPM 86 (257)
T ss_dssp ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCBCC-------CHH--HHHHHTHHHH
T ss_pred ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECC-CCCccCCcCHHHHhhccchh--HHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 79999999999875432111 1112 36788
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..++++++++|++|+
T Consensus 87 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~ 166 (257)
T 2ej5_A 87 MKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVT 166 (257)
T ss_dssp HHHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEE
T ss_pred HHHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHHHHHhCCccC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 167 a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~---------------------- 217 (257)
T 2ej5_A 167 AEEAAALGLATKVIPL----SDWEEEVKQFAERLSAMPTKAIGLIKRLLR---ESEET---------------------- 217 (257)
T ss_dssp HHHHHHHTCCSEEECG----GGHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHHHS----------------------
T ss_pred HHHHHHcCCcceecCh----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhhcC----------------------
Confidence 9999999999999995 779999999999999999999999999999 66555
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|++||+|+|+|+
T Consensus 218 ----------~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~~~ 257 (257)
T 2ej5_A 218 ----------TFDRYLEREAECQRIAGLTSDHREGVKAFFEKRKPLFQGN 257 (257)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTCCCCCCCC
T ss_pred ----------CHHHHHHHHHHHHHHHhCChHHHHHHHHHhcCCCCCCCCC
Confidence 7899999999999999999999999999999999999985
|
| >3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-58 Score=427.37 Aligned_cols=249 Identities=31% Similarity=0.451 Sum_probs=222.9
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||.|+++||+|.|++++..................+
T Consensus 16 ~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 95 (267)
T 3r9t_A 16 RGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHPDHPEWGFAGY 95 (267)
T ss_dssp ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCSCTTCGGGCGGGT
T ss_pred ECCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchhhHHHHhHHHHHH
Confidence 78999999999999999999999999999999999999999999999447999999999876432111000000000111
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCH
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDS 204 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa 204 (333)
....+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|+++|++|+|
T Consensus 96 -~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~i~A 174 (267)
T 3r9t_A 96 -VRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSA 174 (267)
T ss_dssp -TTCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHSCHHHHHHHHHHCCCEEH
T ss_pred -HHHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHcCHHHHHHHHHcCCCCCH
Confidence 2238999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHH---hcCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q psy503 205 TEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRS---IDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281 (333)
Q Consensus 205 ~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (333)
+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++ ++ .....
T Consensus 175 ~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~p~a~~~~K~~~~~l~---~~~~~-------------------- 227 (267)
T 3r9t_A 175 AAARDWGLINEVVEA----GSVLDAALALASAITVNAPLSVQASKRIAYGVD---DGVVV-------------------- 227 (267)
T ss_dssp HHHHHHTSSSEEECT----TCHHHHHHHHHHHHHTSCHHHHHHHHHHHTTEE---TTEEG--------------------
T ss_pred HHHHHCCCccEEcCh----hHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH---HhhcC--------------------
Confidence 999999999999996 6799999999999999999999999999 88 66655
Q ss_pred CCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|+|||+|+|+|+
T Consensus 228 ------------~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~f~g~ 267 (267)
T 3r9t_A 228 ------------GDEPGWDRTMREMRALLKSEDAKEGPRAFAEKREPVWQAR 267 (267)
T ss_dssp ------------GGHHHHHHHHHHHHHHTTSSHHHHHHHHHHTTSCCCCCCC
T ss_pred ------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence 7899999999999999999999999999999999999986
|
| >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-58 Score=422.09 Aligned_cols=256 Identities=24% Similarity=0.396 Sum_probs=218.3
Q ss_pred cccccccccCccceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCc
Q psy503 23 YSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL 102 (333)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl 102 (333)
++.++++...++..+.++. +++|++||||||+++|+||.+|+.+|.++|++++.| ++++|||||. |++||+|.|+
T Consensus 9 ~~~~~~~~~~~~~~i~~~~---~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~-G~~FcaG~Dl 83 (264)
T 3he2_A 9 MGTLEAQTQGPGSMIGITQ---AEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDG-SARAIVLTGQ-GTAFCAGADL 83 (264)
T ss_dssp -------------CEEEEE---ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHCC----CCSEEEEEES-SSCSBCCBCC
T ss_pred CcccccccCCCCCeEEEEE---ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhC-CceEEEEECC-CCCccCCcCC
Confidence 3445666666777777765 789999999999999999999999999999999988 9999999999 7999999999
Q ss_pred hhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhh
Q psy503 103 KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQR 182 (333)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~ 182 (333)
+.... ...+.+.++.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++
T Consensus 84 ~~~~~-----~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~ 158 (264)
T 3he2_A 84 SGDAF-----AADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRR 158 (264)
T ss_dssp TTCTT-----GGGHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHH
T ss_pred ccchh-----hHHHHHHHHHHHHHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccCcCCcchHHHH
Confidence 84211 1234456678889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCccc
Q psy503 183 LPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYR 262 (333)
Q Consensus 183 L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~ 262 (333)
|++++|..++++++++|++|+|+||+++||||+|++ .+++.++|++|+..+|.+++.+|++++ ...
T Consensus 159 L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~v~~--------~~~a~~~A~~la~~~p~a~~~~K~~l~---~~~--- 224 (264)
T 3he2_A 159 LSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGT--------LADAQAWAAEIARLAPLAIQHAKRVLN---DDG--- 224 (264)
T ss_dssp HHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEECC--------HHHHHHHHHHHHTSCHHHHHHHHHHHH---TSS---
T ss_pred HHHHhCHHHHHHHHHcCCCccHHHHHHCCCeEEEec--------HHHHHHHHHHHHcCCHHHHHHHHHHHH---ccC---
Confidence 999999999999999999999999999999999987 356889999999999999999999999 542
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 263 DGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++++.++.|...+..++.++|++||+++|+|||+|+|+|+
T Consensus 225 -------------------------------~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR~P~f~g~ 264 (264)
T 3he2_A 225 -------------------------------AIEEAWPAHKELFDKAWGSQDVIEAQVARMEKRPPKFQGA 264 (264)
T ss_dssp -------------------------------CSCCCCHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCCCC
T ss_pred -------------------------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCCCC
Confidence 2344567788889999999999999999999999999986
|
| >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-57 Score=420.48 Aligned_cols=251 Identities=25% Similarity=0.445 Sum_probs=230.9
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc-------CH----HH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL-------NE----DQ 112 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~-------~~----~~ 112 (333)
.+++|++||||||+++|+||.+|+.+|.++|++++.|+++++|||||. |++||+|.|++++... .. ..
T Consensus 10 ~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 88 (275)
T 1dci_A 10 AQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGA-GKMFTSGIDLMDMASDILQPPGDDVARIAWY 88 (275)
T ss_dssp EETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEES-TTCSBCCBCHHHHHHHHTSCCCSSHHHHHHH
T ss_pred cCCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCccCCcChHHHhhcccccccchhhhhhHH
Confidence 357899999999999999999999999999999999999999999999 7999999999887532 11 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCH-HH
Q psy503 113 IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGI-PL 191 (333)
Q Consensus 113 ~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~-~~ 191 (333)
...+...+++++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|. .+
T Consensus 89 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~~ 168 (275)
T 1dci_A 89 LRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSL 168 (275)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGGTCSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCcHHH
Confidence 22334567788899999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCC
Q psy503 192 AKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPG 271 (333)
Q Consensus 192 a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~ 271 (333)
+++|+++|++|+|+||+++||||+|+|+ .+++++++.++|++|+..+|.+++.+|++++ .....
T Consensus 169 A~~l~ltg~~~~a~eA~~~GLv~~vv~~---~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~---~~~~~---------- 232 (275)
T 1dci_A 169 VNELTFTARKMMADEALDSGLVSRVFPD---KDVMLNAAFALAADISSKSPVAVQGSKINLI---YSRDH---------- 232 (275)
T ss_dssp HHHHHHHCCEEEHHHHHHHTSSSEEESS---HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH---HHHHS----------
T ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCC---hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhccC----------
Confidence 9999999999999999999999999984 4789999999999999999999999999999 66655
Q ss_pred CCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcc---CCCCCCCC
Q psy503 272 RDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGK---YKPVYKGV 333 (333)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflek---r~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|+|| |+|+|+|+
T Consensus 233 ----------------------~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ek~~~r~p~f~~~ 275 (275)
T 1dci_A 233 ----------------------SVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSITFSKL 275 (275)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGGCCCCCC
T ss_pred ----------------------CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 78999999999999999999999999999999 99999985
|
| >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-57 Score=420.95 Aligned_cols=247 Identities=23% Similarity=0.369 Sum_probs=230.1
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC-HHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN-EDQIRSFVSTLRYM 123 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~-~~~~~~~~~~~~~l 123 (333)
+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||. |++||+|.|++++.... .+....+...++++
T Consensus 40 ~~~V~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 118 (287)
T 2vx2_A 40 LDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAE-GPVFSSGHDLKELTEEQGRDYHAEVFQTCSKV 118 (287)
T ss_dssp ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEES-SSEEECCSCCC-CCGGGCHHHHHHHHHHHHHH
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECC-CCCccCCcCHHHHhcccchhHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999 79999999999875432 22334555677889
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++ |++++|..++++++++|++|+
T Consensus 119 ~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~-L~r~vG~~~A~~llltg~~i~ 197 (287)
T 2vx2_A 119 MMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVALEMLFTGEPIS 197 (287)
T ss_dssp HHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHH-HHTTSCHHHHHHHHHHCCCEE
T ss_pred HHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECchhhhCCCCchHHHH-HHHHhhHHHHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+|||+ +++.+++.++|++|+..+|.+++.+|++++ .....
T Consensus 198 A~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~p~a~~~~K~~l~---~~~~~---------------------- 248 (287)
T 2vx2_A 198 AQEALLHGLLSKVVPE----AELQEETMRIARKIASLSRPVVSLGKATFY---KQLPQ---------------------- 248 (287)
T ss_dssp HHHHHHHTSCSEEECG----GGHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHTTS----------------------
T ss_pred HHHHHHCCCcceecCH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhhcC----------------------
Confidence 9999999999999995 789999999999999999999999999998 66555
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
+++++++.|...+..++.++|++||+++|++||+|+|+|
T Consensus 249 ----------~l~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~f~g 287 (287)
T 2vx2_A 249 ----------DLGTAYYLTSQAMVDNLALRDGQEGITAFLQKRKPVWSH 287 (287)
T ss_dssp ----------CHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCCC
T ss_pred ----------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCC
Confidence 789999999999999999999999999999999999986
|
| >3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-59 Score=427.88 Aligned_cols=245 Identities=30% Similarity=0.393 Sum_probs=204.2
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||. |++||+|.|++++.......... .....+.
T Consensus 18 ~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~--~~~~~~~ 94 (262)
T 3r9q_A 18 AGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGD-NGTFCAGADLKAMGTDRGNELHP--HGPGPMG 94 (262)
T ss_dssp ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCTTTTTSTTSCCCCT--TSSCTTS
T ss_pred ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCccCCcCHHHHhccChhhHHH--hhhhHHH
Confidence 78999999999999999999999999999999999999999999999 79999999999886532211000 0112234
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCH
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDS 204 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa 204 (333)
..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..++++++++|++|+|
T Consensus 95 ~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltG~~~~A 174 (262)
T 3r9q_A 95 PSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLILTGRPVHA 174 (262)
T ss_dssp STTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEH
T ss_pred HHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q psy503 205 TEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284 (333)
Q Consensus 205 ~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (333)
+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ +....
T Consensus 175 ~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~~~---~~~~~----------------------- 224 (262)
T 3r9q_A 175 NEALDIGLVNRVVAR----GQAREAAETLAAEIAAFPQQCVRADRDSAI---AQWGM----------------------- 224 (262)
T ss_dssp HHHHHTTSCSEEECT----TCHHHHHHHHHHHHHHSCHHHHHHHHHHHH---HTTTS-----------------------
T ss_pred HHHHHcCCccEecCh----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhcC-----------------------
Confidence 999999999999996 679999999999999999999999999999 77665
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 285 ~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|.. +..++.+ |++||++||+|||+|+|+|+
T Consensus 225 ---------~l~~~l~~e~~-~~~~~~s-d~~Eg~~AF~ekr~p~~~~~ 262 (262)
T 3r9q_A 225 ---------AEEAALDNEFG-SIERVAT-EALEGAGRFAAGEGRHGAGV 262 (262)
T ss_dssp ---------CHHHHHHHHHT-HHHHHHC---------------------
T ss_pred ---------CHHHHHHHHHH-HHHHhcc-HHHHHHHHHHcCCCCCCCCC
Confidence 89999999999 8889999 99999999999999999986
|
| >3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-57 Score=419.07 Aligned_cols=254 Identities=20% Similarity=0.324 Sum_probs=228.5
Q ss_pred eEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCcc-ccCCCchhhcc----cCH
Q psy503 36 QIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVF-CAGADLKHRLT----LNE 110 (333)
Q Consensus 36 ~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F-~~G~Dl~~~~~----~~~ 110 (333)
.+.++. +++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||. |+.| |+|.|++++.. ...
T Consensus 5 ~v~~~~---~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~FF~aG~Dl~~~~~~~~~~~~ 80 (263)
T 3lke_A 5 YVHTEI---QNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSK-HRAYFSSGPRLEDLLICASDQSD 80 (263)
T ss_dssp SEEEEE---CSSEEEEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEES-CTTEEECBSCHHHHHHHHHCSSS
T ss_pred EEEEEE---ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcC-CCceEecCcCHHHHHhhcccCCH
Confidence 345543 79999999999999999999999999999999999999999999999 6778 99999999865 344
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHH
Q psy503 111 DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIP 190 (333)
Q Consensus 111 ~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~ 190 (333)
+....+...+++++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG~~ 160 (263)
T 3lke_A 81 VRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYE 160 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhCHH
Confidence 45556777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCC
Q psy503 191 LAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSP 270 (333)
Q Consensus 191 ~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~ 270 (333)
++++++++|++++|+||+++||||+|+|+ ++++.+++.++|++|+..+|.+++.+|++++ .....
T Consensus 161 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~---~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~--------- 225 (263)
T 3lke_A 161 QTMNLLLEGKLFTSEEALRLGLIQEICEN---KQELQERVKNYLKAVSEGYVPAIAATKKLLK---GKAAE--------- 225 (263)
T ss_dssp HHHHHHHHCCCEEHHHHHHHTSSSEEESS---HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH---TTHHH---------
T ss_pred HHHHHHHhCCCcCHHHHHHcCCCcEecCC---hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---Hhhhc---------
Confidence 99999999999999999999999999994 4889999999999999999999999999999 76655
Q ss_pred CCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCC
Q psy503 271 GRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYK 331 (333)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~ 331 (333)
+++++++.|...+..++.++|++||+++|+||++|.|.
T Consensus 226 -----------------------~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~~~~~~~~ 263 (263)
T 3lke_A 226 -----------------------ELKQQLEQETEELVALFKQTEIKKRLEALVEGHHHHHH 263 (263)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHTTSHHHHHHHHHC---------
T ss_pred -----------------------CHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccCCCCCC
Confidence 78999999999999999999999999999999999984
|
| >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-57 Score=421.01 Aligned_cols=250 Identities=22% Similarity=0.328 Sum_probs=219.9
Q ss_pred eEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhc---ccCHHH
Q psy503 36 QIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL---TLNEDQ 112 (333)
Q Consensus 36 ~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~---~~~~~~ 112 (333)
.+.++. +++|++||||||+++|+||.+|+.+|.++|++++.|+++++|||||. |++||+|.|++++. ......
T Consensus 6 ~v~~~~---~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~ 81 (266)
T 3fdu_A 6 HLNANL---EGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGA-EHDFTAGNDMKDFMGFVQNPNAG 81 (266)
T ss_dssp TEEEEE---ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCBCHHHHHHHHHSCCCS
T ss_pred eEEEEE---ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECC-CCCeECCcCHHHHhhhccccchh
Confidence 355544 78999999999999999999999999999999999999999999998 79999999999876 322111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHH
Q psy503 113 IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192 (333)
Q Consensus 113 ~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a 192 (333)
. .....++.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus 82 ~-~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A 160 (266)
T 3fdu_A 82 P-AGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYHKA 160 (266)
T ss_dssp C-GGGSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHH
T ss_pred h-HHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhCHHHH
Confidence 0 123456678889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCC
Q psy503 193 KELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGR 272 (333)
Q Consensus 193 ~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~ 272 (333)
++++++|+.++|+||+++||||+|+| ++.+++.++|++|+..+|.+++.+|++++ ... .
T Consensus 161 ~~l~ltg~~i~A~eA~~~GLv~~vv~------~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~-~----------- 219 (266)
T 3fdu_A 161 AELLFTAKKFNAETALQAGLVNEIVE------DAYATAQATAQHLTALPLASLKQTKALMK---HDL-D----------- 219 (266)
T ss_dssp HHHHHHCCEECHHHHHHTTSCSEECS------CHHHHHHHHHHHHHTSCHHHHHHHHHHHT---TTH-H-----------
T ss_pred HHHHHhCCCcCHHHHHHCCCHHHHHH------HHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhh-c-----------
Confidence 99999999999999999999999998 27889999999999999999999999999 543 3
Q ss_pred CCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 273 DGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
+++++++.|...+..++.++|++||+++|+|||+|+|+.
T Consensus 220 ---------------------~l~~~l~~e~~~~~~~~~s~d~~eg~~aF~ekR~p~~~~ 258 (266)
T 3fdu_A 220 ---------------------QIIECIDHEAEIFMQRVQSPEMLEAVQAFMQKRQPDFSQ 258 (266)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHC---------
T ss_pred ---------------------cHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCC
Confidence 689999999999999999999999999999999999964
|
| >3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-58 Score=422.78 Aligned_cols=256 Identities=23% Similarity=0.323 Sum_probs=223.4
Q ss_pred cceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc--CHH
Q psy503 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL--NED 111 (333)
Q Consensus 34 ~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~--~~~ 111 (333)
++.+.++. .+++|++||||||+ +|+||.+|+.+|.++|+.++.|+++++|||||. |++||+|.|++++... ..+
T Consensus 12 ~~~v~~~~--~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~ 87 (272)
T 3qk8_A 12 FPSLRFEP--GEHGVLNLVLDSPG-LNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGE-GKAFSSGGSFELIDETIGDYE 87 (272)
T ss_dssp CTTEEEEE--CSTTEEEEEECCHH-HHEECHHHHHHHHHHHHHHHHCTTCSEEEEEES-SSCSBCEECHHHHHHHHHCHH
T ss_pred CCeEEEEE--eCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHhhCCCceEEEEECC-CCCeeCCcCHHHHhccccchH
Confidence 44455543 34689999999999 999999999999999999999999999999999 7999999999987543 222
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHH
Q psy503 112 QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPL 191 (333)
Q Consensus 112 ~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~ 191 (333)
....++..+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 167 (272)
T 3qk8_A 88 GRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGMAK 167 (272)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCSSHHHHTHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHH
Confidence 33455677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCC
Q psy503 192 AKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPG 271 (333)
Q Consensus 192 a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~ 271 (333)
+++++++|++++|+||+++||||+|+|+ +++++++.++|++|+..+|.+++.+|++++ .....
T Consensus 168 A~~l~ltg~~~~A~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~---------- 230 (272)
T 3qk8_A 168 AKYYLLTCETLSGEEAERIGLVSTCVDD----DEVLPTATRLAENLAQGAQNAIRWTKRSLN---HWYRM---------- 230 (272)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSSSEEECG----GGHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHHHH----------
T ss_pred HHHHHHcCCCCCHHHHHHCCCCcEeeCH----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHHhh----------
Confidence 9999999999999999999999999995 779999999999999999999999999998 43321
Q ss_pred CCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 272 RDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
....++..++.| ..++.++|++||+++|+|||+|+|+|+
T Consensus 231 -------------------~~~~~~~~~~~e----~~~~~s~d~~eg~~Af~ekR~p~f~g~ 269 (272)
T 3qk8_A 231 -------------------FGPTFETSLGLE----FLGFTGPDVQEGLAAHRQKRPARFTDR 269 (272)
T ss_dssp -------------------THHHHHHHHHHH----HHHTTSSHHHHHHHHHHTTSCCCC---
T ss_pred -------------------cchhHHHHHHHH----HHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence 000344444444 578899999999999999999999985
|
| >4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-57 Score=420.79 Aligned_cols=256 Identities=29% Similarity=0.420 Sum_probs=221.1
Q ss_pred ceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe-----CCCCccccCCCchhhcccC
Q psy503 35 TQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRS-----LVKDVFCAGADLKHRLTLN 109 (333)
Q Consensus 35 ~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g-----~~g~~F~~G~Dl~~~~~~~ 109 (333)
+.+.++. +++|++||||||+++|+||.+|+.+|.++|+.++.|+++++||||| .|+++||+|.|++++....
T Consensus 10 ~~v~~~~---~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~ 86 (275)
T 4eml_A 10 DDILYYK---AGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGG 86 (275)
T ss_dssp SSEEEEE---ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC------
T ss_pred ceEEEEE---ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhccc
Confidence 3455554 6999999999999999999999999999999999999999999999 7447999999999876421
Q ss_pred HHHHH-HHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccC
Q psy503 110 EDQIR-SFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188 (333)
Q Consensus 110 ~~~~~-~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG 188 (333)
..... .....++.++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r~vG 166 (275)
T 4eml_A 87 YIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIVG 166 (275)
T ss_dssp --------CCCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHC
T ss_pred ccchhhHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhH
Confidence 11111 11123567888999999999999999999999999999999999999999999999999998888999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCC
Q psy503 189 IPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTH 268 (333)
Q Consensus 189 ~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~ 268 (333)
..+|++|+++|++++|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ +...
T Consensus 167 ~~~A~~llltg~~i~A~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~-------- 231 (275)
T 4eml_A 167 QKKAREIWYLCRQYSAQEAERMGMVNTVVPV----DRLEEEGIQWAKEILSKSPLAIRCLKAAFN---ADCD-------- 231 (275)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHHTSCSEEECG----GGHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HTTS--------
T ss_pred HHHHHHHHHhCCCcCHHHHHHcCCccEeeCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhc--------
Confidence 9999999999999999999999999999995 789999999999999999999999999998 5432
Q ss_pred CCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 269 SPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
......+.|.+.+..++.++|++||+++|+|||+|+|+++
T Consensus 232 -------------------------~~~~~~~~~~~~~~~~~~s~d~~eg~~AF~ekR~p~f~~~ 271 (275)
T 4eml_A 232 -------------------------GQAGLQELAGNATLLYYMTEEGSEGKQAFLEKRPPDFSQY 271 (275)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCTTC
T ss_pred -------------------------cchhHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCCC
Confidence 2334445677778889999999999999999999999874
|
| >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-57 Score=417.23 Aligned_cols=255 Identities=34% Similarity=0.498 Sum_probs=229.7
Q ss_pred EEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHH
Q psy503 37 IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSF 116 (333)
Q Consensus 37 ~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~ 116 (333)
+.++.....++|++||||||+++|++|.+|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++...... ...
T Consensus 6 ~~~~~~v~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~--~~~ 82 (260)
T 1mj3_A 6 IITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGG-EKAFAAGADIKEMQNRTFQ--DCY 82 (260)
T ss_dssp EEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECC-SSEEECCBCHHHHTTCCHH--HHH
T ss_pred ceeecccCcCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECC-CCCccCCcChHhhhcccch--HHH
Confidence 4443322367899999999999999999999999999999999999999999998 7999999999987543321 112
Q ss_pred HHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHH
Q psy503 117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELI 196 (333)
Q Consensus 117 ~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~ll 196 (333)
...+...+.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++
T Consensus 83 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ 162 (260)
T 1mj3_A 83 SGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMV 162 (260)
T ss_dssp HC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 22233446678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCC
Q psy503 197 YTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQG 276 (333)
Q Consensus 197 ltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~ 276 (333)
++|++++|+||+++||||+|+|+ +++++++.+++++|+..+|.+++.+|++++ .....
T Consensus 163 ltg~~~~a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~--------------- 220 (260)
T 1mj3_A 163 LTGDRISAQDAKQAGLVSKIFPV----ETLVEEAIQCAEKIANNSKIIVAMAKESVN---AAFEM--------------- 220 (260)
T ss_dssp HHCCCEEHHHHHHHTSCSEEECT----TTHHHHHHHHHHHHHHSCHHHHHHHHHHHH---GGGSS---------------
T ss_pred HcCCcCCHHHHHHcCCccEEeCh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhhcC---------------
Confidence 99999999999999999999996 679999999999999999999999999999 76655
Q ss_pred CCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 277 SKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|++||+|+|+|+
T Consensus 221 -----------------~~~~~l~~e~~~~~~~~~s~d~~egi~af~~kr~p~~~g~ 260 (260)
T 1mj3_A 221 -----------------TLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFKDH 260 (260)
T ss_dssp -----------------CHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCCCCC
T ss_pred -----------------CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCCC
Confidence 7999999999999999999999999999999999999985
|
| >3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-57 Score=423.38 Aligned_cols=257 Identities=28% Similarity=0.458 Sum_probs=220.7
Q ss_pred ceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCH--HH
Q psy503 35 TQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE--DQ 112 (333)
Q Consensus 35 ~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~--~~ 112 (333)
+.+.++. ..++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||.|+++||+|.|++++..... +.
T Consensus 27 ~~v~~~~--~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~ 104 (289)
T 3t89_A 27 EDIRYEK--STDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDD 104 (289)
T ss_dssp SSEEEEE--ETTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC-----------
T ss_pred CeEEEEE--ecCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccchhh
Confidence 3455543 2389999999999999999999999999999999999999999999994469999999998754221 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHH
Q psy503 113 IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192 (333)
Q Consensus 113 ~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a 192 (333)
.......++.++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++|..++
T Consensus 105 ~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r~vG~~~A 184 (289)
T 3t89_A 105 SGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKA 184 (289)
T ss_dssp -----CTHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHHhcCHHHH
Confidence 11122345678889999999999999999999999999999999999999999999999988888889999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCC
Q psy503 193 KELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGR 272 (333)
Q Consensus 193 ~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~ 272 (333)
++++++|+.|+|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ ....
T Consensus 185 ~~llltG~~i~A~eA~~~GLV~~vv~~----~~l~~~a~~~A~~la~~~~~a~~~~K~~l~---~~~~------------ 245 (289)
T 3t89_A 185 REIWFLCRQYDAKQALDMGLVNTVVPL----ADLEKETVRWCREMLQNSPMALRCLKAALN---ADCD------------ 245 (289)
T ss_dssp HHHHHHCCCEEHHHHHHHTSSSEEECG----GGHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HTTS------------
T ss_pred HHHHHcCCcccHHHHHHCCCceEeeCH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhcc------------
Confidence 999999999999999999999999995 789999999999999999999999999998 5432
Q ss_pred CCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 273 DGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
......+.|...+..++.++|++||+++|+|||+|+|+|+
T Consensus 246 ---------------------~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR~P~f~~~ 285 (289)
T 3t89_A 246 ---------------------GQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSKF 285 (289)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHTTSSTTTHHHHHHHTTSCCCCTTS
T ss_pred ---------------------cchHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCCC
Confidence 2334445677778889999999999999999999999874
|
| >3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-57 Score=416.46 Aligned_cols=246 Identities=24% Similarity=0.349 Sum_probs=222.7
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhc-ccCHHH----HHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL-TLNEDQ----IRSFVS 118 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~-~~~~~~----~~~~~~ 118 (333)
.+++|++||||||+++|++|.+|+.+|.++|+.++.|+++++|||||. |++||+|.|++++. ...... ...+..
T Consensus 17 ~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 95 (267)
T 3oc7_A 17 TGGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHT-GGTFCAGADLSEAGSGGSPSSAYDMAVERAR 95 (267)
T ss_dssp HSSSEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEC-SSEEECCBC-----------CHHHHHHHHHH
T ss_pred eeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCceeCCcCchhhhhccCchhhhhhHHHHHH
Confidence 489999999999999999999999999999999999999999999999 78999999999876 222111 124567
Q ss_pred HHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHc
Q psy503 119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYT 198 (333)
Q Consensus 119 ~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~lllt 198 (333)
.++.++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+ ++|..++++++++
T Consensus 96 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~-~vG~~~A~~l~lt 174 (267)
T 3oc7_A 96 EMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLP-KLSARAAARYYLT 174 (267)
T ss_dssp HHHHHHHHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHTT-TSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEeCcccccCCCcchhHHHHHH-HhCHHHHHHHHHc
Confidence 788899999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred CCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCC
Q psy503 199 GRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSK 278 (333)
Q Consensus 199 G~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (333)
|++|+|+||+++||||+| + +++.+++.++|++|+..+|.+++.+|++++ +....
T Consensus 175 g~~~~a~eA~~~GLv~~v-~-----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~----------------- 228 (267)
T 3oc7_A 175 GEKFDARRAEEIGLITMA-A-----EDLDAAIDQLVTDVGRGSPQGLAASKALTT---AAVLE----------------- 228 (267)
T ss_dssp CCCBCHHHHHHHTSSSEE-C-----SSHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHHHH-----------------
T ss_pred CCccCHHHHHHCCChhhh-h-----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhhcC-----------------
Confidence 999999999999999999 4 458999999999999999999999999999 76655
Q ss_pred CCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 279 GGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
+++++++.|...+..++.++|++||+++|+|||+|+|++
T Consensus 229 ---------------~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~~ 267 (267)
T 3oc7_A 229 ---------------RFDRDAERLAEESARLFVSDEAREGMLAFLEKRSPNWTS 267 (267)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTCCCTTC-
T ss_pred ---------------CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence 789999999999999999999999999999999999985
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-58 Score=426.54 Aligned_cols=254 Identities=24% Similarity=0.325 Sum_probs=228.6
Q ss_pred cceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHH--
Q psy503 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNED-- 111 (333)
Q Consensus 34 ~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~-- 111 (333)
++.+.++. +++|++||||||+ .|+||.+|+.+|.++|+.++.|+++++|||||.|+++||+|.|++++......
T Consensus 8 ~~~i~~~~---~~~va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~ 83 (287)
T 3gkb_A 8 YSTLRVSS---EHGVARIILDNPP-VNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQE 83 (287)
T ss_dssp CSSEEEEE---ETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHH
T ss_pred CCeEEEEE---ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccch
Confidence 44566554 6899999999998 79999999999999999999999999999999955899999999987643210
Q ss_pred ---HHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeC-CeEEeccccccCccCChhhhhhccccc
Q psy503 112 ---QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS-NVRMGLVETKLAIIPGAGGTQRLPRIV 187 (333)
Q Consensus 112 ---~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~-~a~f~~pe~~~Gl~p~~g~~~~L~r~i 187 (333)
....+...++.++..+..+||||||+|||+|+|||++|+++||+|||++ +++|++||+++|++|++|++++|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~v 163 (287)
T 3gkb_A 84 LAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGRV 163 (287)
T ss_dssp HHHTSCTTCCTTHHHHHHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHHHHh
Confidence 0011223467788999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCC
Q psy503 188 GIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQST 267 (333)
Q Consensus 188 G~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~ 267 (333)
|..+|++|++||++|+|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ ..
T Consensus 164 G~~~A~ellltG~~i~A~eA~~~GLV~~vv~~----~~l~~~a~~lA~~la~~~p~a~~~~K~~l~---~~--------- 227 (287)
T 3gkb_A 164 GRNRALEVVLTADLFDAETAASYGWINRALPA----DELDEYVDRVARNIAALPDGVIEAAKRSLP---AD--------- 227 (287)
T ss_dssp CHHHHHHHHHHCCCEEHHHHHHHTSSSEEECH----HHHHHHHHHHHHHHHTSCTTHHHHHHHHSC---CC---------
T ss_pred CHHHHHHHHHcCCCCCHHHHHHCCCCcEEeCh----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---cc---------
Confidence 99999999999999999999999999999995 889999999999999999999999999998 53
Q ss_pred CCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC--CCCCCC
Q psy503 268 HSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYK--PVYKGV 333 (333)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~--p~~~~~ 333 (333)
.+.++++.|...+..++.++|++||+++|+|||+ |+|+++
T Consensus 228 --------------------------~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekr~~~P~f~~~ 269 (287)
T 3gkb_A 228 --------------------------DLKEGLLGENDAWAATFSLPAAQQLISGGLKDGAQTPAGERD 269 (287)
T ss_dssp --------------------------CCHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTTTTSHHHHHT
T ss_pred --------------------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCchhhh
Confidence 2358899999999999999999999999999988 999753
|
| >2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-57 Score=422.16 Aligned_cols=256 Identities=20% Similarity=0.333 Sum_probs=222.1
Q ss_pred cceEEEEeeecCCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC---
Q psy503 34 LTQIIYHNSPERPGIVELCMN-RPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN--- 109 (333)
Q Consensus 34 ~~~~~~~~~~~~~~v~~Itln-~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~--- 109 (333)
++.+.++. +++|++|||| ||+++|+||.+|+.+|.++|+.++.|+. ++|||||. |++||+|.|++++....
T Consensus 22 ~~~v~~~~---~~~v~~itln~rp~~~Nal~~~m~~~L~~al~~~~~d~~-r~vVltg~-G~~FcaG~Dl~~~~~~~~~~ 96 (291)
T 2fbm_A 22 YRDIVVKK---EDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAA-GSVFCCGLDFGYFVKHLRNN 96 (291)
T ss_dssp CSSEEEEE---CSSEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSSC-SEEEEEEC-SSCSBCCBCHHHHHHHHHHC
T ss_pred cceEEEEE---eCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEECC-CCCccCCcCHHHHHhccccc
Confidence 44455543 7899999999 6999999999999999999999998875 99999999 79999999999875321
Q ss_pred -HHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccC
Q psy503 110 -EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188 (333)
Q Consensus 110 -~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG 188 (333)
......+...++.++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG 176 (291)
T 2fbm_A 97 RNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMG 176 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCcccHHHHHHHHHh
Confidence 1122344456778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCC
Q psy503 189 IPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTH 268 (333)
Q Consensus 189 ~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~ 268 (333)
..++++|+++|++|+|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ .....
T Consensus 177 ~~~A~el~ltg~~i~A~eA~~~GLV~~vv~~----~~l~~~a~~~a~~la~~~p~a~~~~K~~l~---~~~~~------- 242 (291)
T 2fbm_A 177 KASANEMLIAGRKLTAREACAKGLVSQVFLT----GTFTQEVMIQIKELASYNPIVLEECKALVR---CNIKL------- 242 (291)
T ss_dssp HHHHHHHHTSCCEEEHHHHHHTTSCSEEECS----TTSHHHHHHHHHHHTTSCHHHHHHHHHHHH---TTTHH-------
T ss_pred HHHHHHHHHcCCccCHHHHHHCCCcceecCh----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhcc-------
Confidence 9999999999999999999999999999996 678999999999999999999999999999 66554
Q ss_pred CCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHH-hccCCCCCCCC
Q psy503 269 SPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSF-LGKYKPVYKGV 333 (333)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~af-lekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++| +|||+|+|+|+
T Consensus 243 -------------------------~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~~ekR~P~f~~~ 283 (291)
T 2fbm_A 243 -------------------------ELEQANERECEVLRKIWSSAQGIESMLKIPLLGYKAAFPPR 283 (291)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHTSHHHHHHHHTC------------
T ss_pred -------------------------CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCCCC
Confidence 78999999999999999999999999999 99999999874
|
| >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-57 Score=417.96 Aligned_cols=248 Identities=26% Similarity=0.446 Sum_probs=225.2
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe-CCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRS-LVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g-~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
+++|++||||||+++|++|.+|+.+|.++|+.++.|+ +++||||| .|+++||+|.|++++.....+. ..+...++++
T Consensus 11 ~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~~ 88 (261)
T 1ef8_A 11 INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRDP-LSYDDPLRQI 88 (261)
T ss_dssp ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----CT-TCTTSHHHHH
T ss_pred eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCchh-HHHHHHHHHH
Confidence 6899999999999999999999999999999999999 99999999 8339999999999875422111 1112345778
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..++++++++|+.++
T Consensus 89 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~ 168 (261)
T 1ef8_A 89 TRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPIT 168 (261)
T ss_dssp HHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHHHHHHHHHCCCEE
T ss_pred HHHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|++++ .....
T Consensus 169 a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~---------------------- 219 (261)
T 1ef8_A 169 AQRALAVGILNHVVEV----EELEDFTLQMAHHISEKAPLAIAVIKEELR---VLGEA---------------------- 219 (261)
T ss_dssp HHHHHHTTSCSEEECH----HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH---HHHHC----------------------
T ss_pred HHHHHHCCCcccccCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhhcC----------------------
Confidence 9999999999999984 889999999999999999999999999998 65544
Q ss_pred CcccccccccCHHHHHHHHHHHHH--HHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYD--RVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~--~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|.+.+. .++.++|++||+++|++||+|+|+|+
T Consensus 220 ----------~~~~~~~~e~~~~~~~~~~~s~d~~eg~~af~ekr~p~~~~~ 261 (261)
T 1ef8_A 220 ----------HTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNFVGH 261 (261)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCCCC
T ss_pred ----------CHHHHHHHHHHHhhHHHhhcCHHHHHHHHHHHccCCCCCCCC
Confidence 67788899999999 99999999999999999999999985
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-56 Score=411.13 Aligned_cols=245 Identities=30% Similarity=0.496 Sum_probs=226.0
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc---CHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFVSTLR 121 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~---~~~~~~~~~~~~~ 121 (333)
+++|++||||||+++|++|.+|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++... ...........++
T Consensus 6 ~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 84 (253)
T 1uiy_A 6 KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGR-GKAFSAGADLAFLERVTELGAEENYRHSLSLM 84 (253)
T ss_dssp CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred eCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCcccCcChHHHHhcccCCchhHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999 7999999999987543 2221111112267
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRL 201 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~ 201 (333)
+++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|++++|..++++++++|++
T Consensus 85 ~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~a~~l~ltg~~ 163 (253)
T 1uiy_A 85 RLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALV-SVILVRAVGEKAAKDLLLTGRL 163 (253)
T ss_dssp HHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHH-HHHHHHHSCHHHHHHHHHHCCE
T ss_pred HHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCchH-HHHHHHHhCHHHHHHHHHhCCc
Confidence 888999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred CCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q psy503 202 VDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281 (333)
Q Consensus 202 isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (333)
++|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 164 ~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~-------------------- 216 (253)
T 1uiy_A 164 VEAREAKALGLVNRIAPP----GKALEEAKALAEEVAKNAPTSLRLTKELLL---ALPGM-------------------- 216 (253)
T ss_dssp EEHHHHHHHTSCSEEECT----TCHHHHHHHHHHHHHHSCHHHHHHHHHHHH---HGGGS--------------------
T ss_pred cCHHHHHHCCCcceecCh----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhhcC--------------------
Confidence 999999999999999996 679999999999999999999999999999 66655
Q ss_pred CCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Q psy503 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVY 330 (333)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~ 330 (333)
+++++++.|.+.+..++.++|++||+++|++||+|+|
T Consensus 217 ------------~~~~~l~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~ 253 (253)
T 1uiy_A 217 ------------GLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPRF 253 (253)
T ss_dssp ------------CHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCCC
T ss_pred ------------CHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCcCCCCC
Confidence 7899999999999999999999999999999999998
|
| >3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-57 Score=420.89 Aligned_cols=251 Identities=29% Similarity=0.465 Sum_probs=219.9
Q ss_pred cceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHH
Q psy503 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQI 113 (333)
Q Consensus 34 ~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~ 113 (333)
++.+.++. +++|++||||||+++|+||.+|+.+|.++|++++.|+++++|||||. |++||+|.|++++........
T Consensus 14 ~~~v~~~~---~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~ 89 (265)
T 3qxi_A 14 EPEVLVEQ---RDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGA-GGSFCAGMDLKAFARGENVVV 89 (265)
T ss_dssp -CCEEEEE---ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTCCCCSBC-------CCCEE
T ss_pred CCeEEEEE---ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECC-CCCeeCCCChhhhhccchhhh
Confidence 44555554 69999999999999999999999999999999999999999999999 789999999998754321110
Q ss_pred HHHHHHHHHH-HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHH
Q psy503 114 RSFVSTLRYM-TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192 (333)
Q Consensus 114 ~~~~~~~~~l-~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a 192 (333)
.. +.+ +..+.. ||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..++
T Consensus 90 ~~-----~~~~~~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 163 (265)
T 3qxi_A 90 EG-----RGLGFTERPP-AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIA 163 (265)
T ss_dssp TT-----TEETTTTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHSCHHHH
T ss_pred hh-----hhhhHHHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHhCHHHH
Confidence 00 111 233334 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCC
Q psy503 193 KELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGR 272 (333)
Q Consensus 193 ~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~ 272 (333)
++++++|++|+|+||+++||||+|||+ +++.+++.++|++|+..+|.+++.+|++++ +....
T Consensus 164 ~~l~ltg~~~~a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~p~a~~~~K~~l~---~~~~~----------- 225 (265)
T 3qxi_A 164 MELALTGDNLSAERAHALGMVNVLAEP----GAALDAAIALAEKITANGPLAVAATKRIIT---ESRGW----------- 225 (265)
T ss_dssp HHHHHHCCCEEHHHHHHTTSCSEEECT----TCHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHTTC-----------
T ss_pred HHHHHcCCCcCHHHHHHCCCccEeeCh----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhhcC-----------
Confidence 999999999999999999999999996 679999999999999999999999999999 66655
Q ss_pred CCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 273 DGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|+|||+|+|+|+
T Consensus 226 ---------------------~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~g~ 265 (265)
T 3qxi_A 226 ---------------------SLDTRFAQQMKILFPIFTSNDAKEGAIAFAEKRPPRWTGT 265 (265)
T ss_dssp ---------------------CTTTHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCCCCC
T ss_pred ---------------------CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCCC
Confidence 7889999999999999999999999999999999999985
|
| >3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-57 Score=418.57 Aligned_cols=243 Identities=29% Similarity=0.490 Sum_probs=222.8
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|++||||||+++|++|.+|+.+|.++|++++.|+++++|||||. |++||+|.|++++.......... .+ . +
T Consensus 14 ~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~---~~-~-~ 87 (256)
T 3trr_A 14 RDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGA-GGNFCAGMDLKAFVSGEAVLSER---GL-G-F 87 (256)
T ss_dssp ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEG-GGCCCCCBCHHHHHHTCCCEETT---EE-T-T
T ss_pred ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECC-CCceecCcCHHHhccccchhhhh---hh-h-H
Confidence 79999999999999999999999999999999999999999999999 78999999999875422110000 01 1 2
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCH
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDS 204 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa 204 (333)
..+ .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|
T Consensus 88 ~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a 166 (256)
T 3trr_A 88 TNV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTA 166 (256)
T ss_dssp SSS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHHHHHHHHHHCCCEEH
T ss_pred HHh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCcCH
Confidence 234 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q psy503 205 TEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284 (333)
Q Consensus 205 ~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (333)
+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ +....
T Consensus 167 ~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~----------------------- 216 (256)
T 3trr_A 167 EDAAKYGFINRLVDD----GQALDTALELAAKITANGPLAVAATKRIII---ESASW----------------------- 216 (256)
T ss_dssp HHHGGGTCCSEEECT----TCHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HGGGS-----------------------
T ss_pred HHHHHCCCeeEecCh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhhcC-----------------------
Confidence 999999999999996 679999999999999999999999999999 76665
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 285 ~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|+|||+|+|+|+
T Consensus 217 ---------~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~g~ 256 (256)
T 3trr_A 217 ---------APEEAFAKQGEILMPIFVSEDAKEGAKAFAEKRAPVWQGK 256 (256)
T ss_dssp ---------CHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCCCC
T ss_pred ---------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCCCC
Confidence 8999999999999999999999999999999999999985
|
| >3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-57 Score=432.23 Aligned_cols=249 Identities=25% Similarity=0.390 Sum_probs=187.2
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC------ccccCCCchhhcccCH--------
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKD------VFCAGADLKHRLTLNE-------- 110 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~------~F~~G~Dl~~~~~~~~-------- 110 (333)
+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||.|++ +||+|.|++++.....
T Consensus 64 ~~gVa~ItlnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~ 143 (334)
T 3t8b_A 64 DDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTA 143 (334)
T ss_dssp SSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC------------
T ss_pred cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhcccccccccccc
Confidence 58999999999999999999999999999999999999999999999444 8999999998643211
Q ss_pred ---HHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEe-CCeEEeccccccCccCChhhhhhcccc
Q psy503 111 ---DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA-SNVRMGLVETKLAIIPGAGGTQRLPRI 186 (333)
Q Consensus 111 ---~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias-~~a~f~~pe~~~Gl~p~~g~~~~L~r~ 186 (333)
+........+..++..|..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|++++|+|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p~~gg~~~L~r~ 223 (334)
T 3t8b_A 144 DTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQ 223 (334)
T ss_dssp ----------CCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSSCCSCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCCcccHHHHHHHH
Confidence 0011112235678888999999999999999999999999999999999 999999999999999999999999999
Q ss_pred cCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCC
Q psy503 187 VGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQS 266 (333)
Q Consensus 187 iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~ 266 (333)
+|..+|++++++|++|+|+||+++||||+|||+ +++.+++.++|++|+..+|.+++.+|++++ ...+
T Consensus 224 vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~----~~l~~~a~~~A~~ia~~~p~a~~~~K~~l~---~~~~------ 290 (334)
T 3t8b_A 224 VGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEH----AELETVGLQWAAEINAKSPQAQRMLKFAFN---LLDD------ 290 (334)
T ss_dssp HHHHHHHHHHHHCCEEEHHHHHHHTSCSEEECG----GGHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HTCC------
T ss_pred hhHHHHHHHHHhCCcCCHHHHHHCCCCcEecCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhc------
Confidence 999999999999999999999999999999995 789999999999999999999999999998 5432
Q ss_pred CCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 267 THSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
.+.+.+..|.+.+..++.++|++||++||+|||+|+|+++
T Consensus 291 ---------------------------~~~~~~~~e~~~~~~~~~s~d~~Eg~~AFleKR~P~f~~~ 330 (334)
T 3t8b_A 291 ---------------------------GLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDWSPF 330 (334)
T ss_dssp ---------------------------CC--------------------------------------
T ss_pred ---------------------------chHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCCC
Confidence 2334455667777888999999999999999999999874
|
| >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-56 Score=416.04 Aligned_cols=256 Identities=25% Similarity=0.391 Sum_probs=206.4
Q ss_pred cceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC----
Q psy503 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN---- 109 (333)
Q Consensus 34 ~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~---- 109 (333)
++.+.++. +++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++....
T Consensus 8 ~~~i~~~~---~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~ 83 (276)
T 2j5i_A 8 WKTVKVEI---EDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGA-GEAWTAGMDLKEYFREVDAGP 83 (276)
T ss_dssp CSSEEEEE---ETEEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEES-TTCSBCCBCHHHHHHHHHHSC
T ss_pred CceEEEEE---eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCCcCCcChhhHhhccccch
Confidence 34455544 68999999999999999999999999999999999999999999999 79999999999864211
Q ss_pred HHHHHHHHHHHHHH-HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccC
Q psy503 110 EDQIRSFVSTLRYM-TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188 (333)
Q Consensus 110 ~~~~~~~~~~~~~l-~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG 188 (333)
.+....+...+..+ +..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG 163 (276)
T 2j5i_A 84 EILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVG 163 (276)
T ss_dssp TTHHHHHHHHHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhC
Confidence 11112222223343 66788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCC
Q psy503 189 IPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTH 268 (333)
Q Consensus 189 ~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~ 268 (333)
..++++++++|++|+|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ +....
T Consensus 164 ~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~p~a~~~~K~~l~---~~~~~------- 229 (276)
T 2j5i_A 164 HRQSLMYIMTGKTFGGQKAAEMGLVNESVPL----AQLREVTIELARNLLEKNPVVLRAAKHGFK---RCREL------- 229 (276)
T ss_dssp HHHHHHHHHHCCEEEHHHHHHHTSSSEEECH----HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHTTS-------
T ss_pred HHHHHHHHHhCCcccHHHHHHcCCccEeeCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHhcC-------
Confidence 9999999999999999999999999999994 889999999999999999999999999999 66655
Q ss_pred CCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHH--hcCc-cHHHHHHHHhccC--CCCCCC
Q psy503 269 SPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRV--IRTQ-DRVEGLKSFLGKY--KPVYKG 332 (333)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~--~~~~-d~~egi~aflekr--~p~~~~ 332 (333)
+++++++.|...+..+ +.++ |++||+++|+||| +|+|++
T Consensus 230 -------------------------~~~~~~~~e~~~~~~~~~~~s~~d~~eg~~AF~ekr~r~p~~~~ 273 (276)
T 2j5i_A 230 -------------------------TWEQNEDYLYAKLDQSRLLDTEGGREQGMKQFLDDKSIKPGLQA 273 (276)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHHHC------------------------
T ss_pred -------------------------CHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcccCCCCccc
Confidence 7888898888777655 6799 9999999999998 999986
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-56 Score=412.90 Aligned_cols=245 Identities=18% Similarity=0.323 Sum_probs=225.1
Q ss_pred CCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc---C-HHHHHHHHHH
Q psy503 45 RPGIVELCMN-RPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---N-EDQIRSFVST 119 (333)
Q Consensus 45 ~~~v~~Itln-~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~---~-~~~~~~~~~~ 119 (333)
+++|++|||| ||+++|+||.+|+.+|.++|++++.|+. ++|||+|. |++||+|.|++++... . ......+...
T Consensus 12 ~~~v~~itln~rp~~~Nal~~~~~~~L~~al~~~~~d~~-r~vvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 89 (261)
T 2gtr_A 12 QDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDS-KLVLLSAV-GSVFCCGLDFIYFIRRLTDDRKRESTKMAEA 89 (261)
T ss_dssp ETTEEEEEECCSSSSTTEECHHHHHHHHHHHHHHHHSSC-SCEEEEES-SSCSBCEECHHHHHHHHHHCHHHHHHHHHHH
T ss_pred eCCEEEEEECCCCccCCCCCHHHHHHHHHHHHHHhcCCC-EEEEEecC-CCccccccCchhhhhccccchhhHHHHHHHH
Confidence 6899999999 6999999999999999999999998875 99999998 7999999999987532 1 1122344456
Q ss_pred HHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcC
Q psy503 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTG 199 (333)
Q Consensus 120 ~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG 199 (333)
+++++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..++++++++|
T Consensus 90 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg 169 (261)
T 2gtr_A 90 IRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSG 169 (261)
T ss_dssp HHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHcCHHHHHHHHHcC
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy503 200 RLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKG 279 (333)
Q Consensus 200 ~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (333)
++|+|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|++++ .....
T Consensus 170 ~~~~a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~p~a~~~~K~~l~---~~~~~------------------ 224 (261)
T 2gtr_A 170 RKLTAQEACGKGLVSQVFWP----GTFTQEVMVRIKELASCNPVVLEESKALVR---CNMKM------------------ 224 (261)
T ss_dssp CCEEHHHHHHTTSCSEEECG----GGHHHHHHHHHHHHHTSCHHHHHHHHHHHH---TTTHH------------------
T ss_pred CCCCHHHHHHCCCcccccCh----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hcccc------------------
Confidence 99999999999999999995 779999999999999999999999999999 66554
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Q psy503 280 GESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVY 330 (333)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~ 330 (333)
+++++++.|...+..++.++|++||+++|+|||+|+|
T Consensus 225 --------------~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~P~f 261 (261)
T 2gtr_A 225 --------------ELEQANERECEVLKKIWGSAQGMDSMLKYLQRKIDEF 261 (261)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHC-
T ss_pred --------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCC
Confidence 7889999999999999999999999999999999998
|
| >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-56 Score=409.90 Aligned_cols=244 Identities=25% Similarity=0.328 Sum_probs=224.6
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc---CHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFVSTLR 121 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~---~~~~~~~~~~~~~ 121 (333)
+++|++||||||+ +|++|.+|+.+|.++|+.++.|+++++|||+|. |++||+|.|++ +... ..+....+...++
T Consensus 18 ~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~-~~~~~~~~~~~~~~~~~~~~ 94 (264)
T 1wz8_A 18 RPGVLEITFRGEK-LNAMPPALHRGLARVWRDLEAVEGVRAVLLRGE-GGVFSAGGSFG-LIEEMRASHEALLRVFWEAR 94 (264)
T ss_dssp ETTEEEEEECCSG-GGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEG-GGCCBCCBCHH-HHHHHHHCHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECC-CCCCcccCccc-cccccccchHHHHHHHHHHH
Confidence 6899999999999 999999999999999999999999999999999 79999999998 6432 2122233456678
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRL 201 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~ 201 (333)
+++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..++++++++|++
T Consensus 95 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~ 174 (264)
T 1wz8_A 95 DLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEP 174 (264)
T ss_dssp HHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeCchhhcCcCCCccHHHHHHHHhCHHHHHHHHHcCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q psy503 202 VDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281 (333)
Q Consensus 202 isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (333)
++|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|+.++ ....
T Consensus 175 ~~a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~--------------------- 226 (264)
T 1wz8_A 175 LTGEEAERLGLVALAVED----EKVYEKALEVAERLAQGPKEALHHTKHALN---HWYR--------------------- 226 (264)
T ss_dssp EEHHHHHHHTSSSEEECG----GGHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHHH---------------------
T ss_pred CCHHHHHHCCCceeecCh----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHHH---------------------
Confidence 999999999999999985 789999999999999999999999999998 4432
Q ss_pred CCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCC
Q psy503 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYK 331 (333)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~ 331 (333)
.++++++.|...+..++.++|++||+++|++||+|+|+
T Consensus 227 ------------~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~ 264 (264)
T 1wz8_A 227 ------------SFLPHFELSLALEFLGFSGKELEEGLKALKEKRPPEFP 264 (264)
T ss_dssp ------------TTHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCCC
T ss_pred ------------HHHHHHHHHHHHHHHHhcChHHHHHHHHHHccCCCCCC
Confidence 25778889999999999999999999999999999995
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-56 Score=412.26 Aligned_cols=252 Identities=20% Similarity=0.291 Sum_probs=215.0
Q ss_pred cceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHH-
Q psy503 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ- 112 (333)
Q Consensus 34 ~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~- 112 (333)
++.+.++. +++|++||||||+++|+||.+|+.+|.++|++++.|+++ +|||||. |++||+|.|++++.......
T Consensus 25 ~~~i~~~~---~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~-g~~FcaG~Dl~~~~~~~~~~~ 99 (280)
T 2f6q_A 25 FETLVVTS---EDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGN-GDYYSSGNDLTNFTDIPPGGV 99 (280)
T ss_dssp CSSEEEEE---ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEES-TTCSBCCBCC----CCCTTHH
T ss_pred CCeEEEEE---ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCC-CCCcccCCCHHHHhhcCcchh
Confidence 44455543 689999999999999999999999999999999999999 9999998 79999999999876532222
Q ss_pred ---HHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCH
Q psy503 113 ---IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGI 189 (333)
Q Consensus 113 ---~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~ 189 (333)
...+...+++++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 179 (280)
T 2f6q_A 100 EEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSP 179 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHHhCH
Confidence 12234556788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCC
Q psy503 190 PLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHS 269 (333)
Q Consensus 190 ~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~ 269 (333)
.++++++++|++++|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|+.++ .....
T Consensus 180 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~-------- 244 (280)
T 2f6q_A 180 AKATEMLIFGKKLTAGEACAQGLVTEVFPD----STFQKEVWTRLKAFAKLPPNALRISKEVIR---KRERE-------- 244 (280)
T ss_dssp HHHHHHHTTCCCEEHHHHHHTTSCSEEECT----TTHHHHHHHHHHHHTTSCHHHHHHHHHHHH---GGGHH--------
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCcceEECH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhhc--------
Confidence 999999999999999999999999999996 679999999999999999999999999999 66554
Q ss_pred CCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Q psy503 270 PGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPV 329 (333)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~ 329 (333)
+++++++.|.+.+..++.++|++||+++|+|||+|.
T Consensus 245 ------------------------~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekR~p~ 280 (280)
T 2f6q_A 245 ------------------------KLHAVNAEECNVLQGRWLSDECTNAVVNFLSRKSKL 280 (280)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHTSHHHHC------------
T ss_pred ------------------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCC
Confidence 788999999999999999999999999999999983
|
| >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-56 Score=412.81 Aligned_cols=249 Identities=18% Similarity=0.249 Sum_probs=217.0
Q ss_pred eEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC--HHHH
Q psy503 36 QIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN--EDQI 113 (333)
Q Consensus 36 ~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~--~~~~ 113 (333)
.+.++. +++|++||||||+++|+||.+|+.+|.++|++++.| ++++|||||. |++||+|.|++++.... ....
T Consensus 8 ~i~~~~---~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~ 82 (267)
T 3hp0_A 8 TIKVRF---QASVCYITFHRPEANNTINDTLIEECLQVLNQCETS-TVTVVVLEGL-PEVFCFGADFQEIYQEMKRGRKQ 82 (267)
T ss_dssp SEEEEE---ETTEEEEEECCGGGTTCBCSHHHHHHHHHHHHHHHS-SCCEEEEECC-SSCSBCCBCHHHHHHTTTTTCCS
T ss_pred eEEEEE---ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhcC-CCEEEEEECC-CCceecCcCHHHHHhcccChHHH
Confidence 355543 789999999999999999999999999999999986 6999999998 89999999999876431 1111
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHH
Q psy503 114 RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAK 193 (333)
Q Consensus 114 ~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~ 193 (333)
..+...++.++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++| +++|++++|..+|+
T Consensus 83 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~A~ 161 (267)
T 3hp0_A 83 ASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACV-LPFLIRRIGRQKAH 161 (267)
T ss_dssp CCCCHHHHHHHHHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTT-HHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchhH-HHHHHHHhCHHHHH
Confidence 22345567888999999999999999999999999999999999999999999999999999875 66899999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCC
Q psy503 194 ELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRD 273 (333)
Q Consensus 194 ~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~ 273 (333)
+++++|++|+|+||+++||||+|+|+. + +.+.+++++|+..+|.+++.+|++++ ....
T Consensus 162 ellltg~~i~A~eA~~~GLV~~vv~~~---~---~~~~~~a~~la~~~p~a~~~~K~~l~---~~~~------------- 219 (267)
T 3hp0_A 162 YMTLMTKPISVQEASEWGLIDAFDAES---D---VLLRKHLLRLRRLNKKGIAHYKQFMS---SLDH------------- 219 (267)
T ss_dssp HHHHHCCCBCHHHHHHHTSSSCBCSCT---T---HHHHHHHHHHTTSCHHHHHHHHHHHH---HHCC-------------
T ss_pred HHHHcCCCCCHHHHHHCCCcceecCCH---H---HHHHHHHHHHHhCCHHHHHHHHHHHH---hccc-------------
Confidence 999999999999999999999999862 2 23678999999999999999999998 5432
Q ss_pred CCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 274 GQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
.++++++.|.+.+..++.++|++||+++|+|||+|+|..
T Consensus 220 --------------------~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekr~P~~~~ 258 (267)
T 3hp0_A 220 --------------------QVSRAKATALTANQDMFSDPQNQMGIIRYVETGQFPWED 258 (267)
T ss_dssp --------------------HHHHHHHHHHHHHHHHTTSTTHHHHHHHHTTSCCC----
T ss_pred --------------------chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC
Confidence 467788889999999999999999999999999999964
|
| >2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-56 Score=413.63 Aligned_cols=255 Identities=28% Similarity=0.428 Sum_probs=223.5
Q ss_pred cceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-ccccCCCchhhcccCHHH
Q psy503 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKD-VFCAGADLKHRLTLNEDQ 112 (333)
Q Consensus 34 ~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~-~F~~G~Dl~~~~~~~~~~ 112 (333)
++.+.++. +++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||. |+ +||+|.|++++.......
T Consensus 12 ~~~i~~~~---~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~~FcaG~Dl~~~~~~~~~~ 87 (273)
T 2uzf_A 12 YDEIKYEF---YEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGE-GDLAFCSGGDQKKRGHGGYVG 87 (273)
T ss_dssp CSSEEEEE---ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEES-SSEEEECCCCCC--------C
T ss_pred CceEEEEE---ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecC-CCCceecCcCcHhhhccccch
Confidence 33355543 68999999999999999999999999999999999999999999999 66 999999999874311100
Q ss_pred HHHH-HHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHH
Q psy503 113 IRSF-VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPL 191 (333)
Q Consensus 113 ~~~~-~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~ 191 (333)
...+ ...++.++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 167 (273)
T 2uzf_A 88 EDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKK 167 (273)
T ss_dssp CSSSCCCTHHHHHHHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEECCGGGTTCCCCSTTTHHHHHHHCHHH
T ss_pred hhhHHHhhHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEECchhhhCCCCchhHHHHHHHHhCHHH
Confidence 0000 011456778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCC
Q psy503 192 AKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPG 271 (333)
Q Consensus 192 a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~ 271 (333)
+++++++|+.|+|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ .. .
T Consensus 168 A~~l~ltg~~~~a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~--~---------- 228 (273)
T 2uzf_A 168 AREIWYLCRQYNAQEALDMGLVNTVVPL----EKVEDETVQWCKEIMKHSPTALRFLKAAMN---AD--T---------- 228 (273)
T ss_dssp HHHHHHTCCCEEHHHHHHHTSSSEEECG----GGSHHHHHHHHHHHTTSCHHHHHHHHHHHH---HH--H----------
T ss_pred HHHHHHhCCCCCHHHHHHcCCCccccCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---cc--C----------
Confidence 9999999999999999999999999995 778999999999999999999999999997 32 2
Q ss_pred CCCCCCCCCCCCCcccccccccCHHHHHHHHH-HHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 272 RDGQGSKGGESKGTENQNREFQGRYSGMEWEG-ICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~-~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|. ..+..++.++|++||+++|++||+|+|+|+
T Consensus 229 ----------------------~~~~~l~~e~~~~~~~~~~s~d~~egi~af~ekr~p~f~~~ 269 (273)
T 2uzf_A 229 ----------------------DGLAGLQQMAGDATLLYYTTDEAKEGRDAFKEKRDPDFDQF 269 (273)
T ss_dssp ----------------------SHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCSSS
T ss_pred ----------------------CHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcCCCCCCCC
Confidence 6788999998 889999999999999999999999999874
|
| >3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-57 Score=414.12 Aligned_cols=243 Identities=23% Similarity=0.286 Sum_probs=187.5
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHH-HHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ-IRSFVSTLRYM 123 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~-~~~~~~~~~~l 123 (333)
+++|++||||||+++|++|.+|+.+|.++|++++.|+++++|||||. |++||+|.|++++....... ...+...++.+
T Consensus 13 ~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 91 (256)
T 3qmj_A 13 DNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGS-GRGFSAGTDLAEMQARITDPNFSEGKFGFRGL 91 (256)
T ss_dssp ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTEEECCBCHHHHHHHHHSSSCCCCSSHHHHH
T ss_pred ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCcccCcCHHHHhhcccchhHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999 79999999999875421110 01123456788
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++
T Consensus 92 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~ 171 (256)
T 3qmj_A 92 IKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWID 171 (256)
T ss_dssp HHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHHHHHHHHHHHHHSCCCEE
T ss_pred HHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ +....
T Consensus 172 a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~---------------------- 222 (256)
T 3qmj_A 172 AEEALRMGLVWRICSP----EELLPEARRHAEILAAKPISSLMAVKHTMV---EPNRA---------------------- 222 (256)
T ss_dssp HHHHHHHTSSSEEECG----GGHHHHHHHHHHHHHTSCHHHHHHHHHHHH---CC-------------------------
T ss_pred HHHHHHCCCccEEeCH----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhcC----------------------
Confidence 9999999999999995 789999999999999999999999999999 76655
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYK 327 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~ 327 (333)
+++++++.|...+..++.++|++||+++|+||||
T Consensus 223 ----------~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~ 256 (256)
T 3qmj_A 223 ----------QIAAASARENAHFAELMGAQANAAALADFTDRRR 256 (256)
T ss_dssp --------------------------------------------
T ss_pred ----------CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCC
Confidence 7899999999999999999999999999999986
|
| >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-55 Score=406.67 Aligned_cols=249 Identities=21% Similarity=0.297 Sum_probs=222.2
Q ss_pred ecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHH
Q psy503 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY 122 (333)
Q Consensus 43 ~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 122 (333)
+.+++|++||||||+ .|+||.+|+.+|.++|++++.|+++++|||+|.+|++||+|.|++++.....+....+...++.
T Consensus 10 ~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 88 (260)
T 1sg4_A 10 DAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQE 88 (260)
T ss_dssp ETTTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHH
T ss_pred EecCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccCHHHHHHHHHHHHH
Confidence 347899999999996 7999999999999999999999999999999986789999999999865544444556667888
Q ss_pred HHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEe--CCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA--SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 123 l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias--~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
++.++..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|++++|++++|..++++++++|+
T Consensus 89 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~llltg~ 168 (260)
T 1sg4_A 89 LWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGL 168 (260)
T ss_dssp HHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCC
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGG 280 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (333)
.|+|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|+.++ .....
T Consensus 169 ~~~a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~------------------- 222 (260)
T 1sg4_A 169 LFPPAEALQVGIVDQVVPE----EQVQSTALSAIAQWMAIPDHARQLTKAMMR---KATAS------------------- 222 (260)
T ss_dssp CBCHHHHHHHTSSSEEECG----GGHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHHHH-------------------
T ss_pred cCCHHHHHHcCCCCEecCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---Hhhhc-------------------
Confidence 9999999999999999985 789999999999999999999999999998 65544
Q ss_pred CCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCC
Q psy503 281 ESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYK 331 (333)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~ 331 (333)
+++++++.|...+..++.++|++||+++|++||+|+-|
T Consensus 223 -------------~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~~~~~ 260 (260)
T 1sg4_A 223 -------------RLVTQRDADVQNFVSFISKDSIQKSLQMYLERLKEEKG 260 (260)
T ss_dssp -------------HHHTTHHHHHHHHHHHHTSHHHHHHHTC----------
T ss_pred -------------cHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccCC
Confidence 67888999999999999999999999999999999754
|
| >3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-55 Score=423.78 Aligned_cols=257 Identities=22% Similarity=0.321 Sum_probs=229.2
Q ss_pred eEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC------
Q psy503 36 QIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN------ 109 (333)
Q Consensus 36 ~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~------ 109 (333)
+..+.+ +.+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||.|+++||+|+|++++....
T Consensus 41 ~~~v~~-~~~~~V~~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~ 119 (407)
T 3ju1_A 41 FQTLAT-ASGKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQ 119 (407)
T ss_dssp EEEEEC-TTSCEEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSS
T ss_pred cceEEE-EEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhcccccccc
Confidence 334443 4589999999999999999999999999999999999999999999999548999999999876431
Q ss_pred -HHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccC
Q psy503 110 -EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188 (333)
Q Consensus 110 -~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG 188 (333)
......++...+.++.+|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 120 ~~~~~~~~~~~~~~l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~G~t~~L~rl~g 199 (407)
T 3ju1_A 120 VTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPG 199 (407)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHHHTTTSST
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCCchHHHHHhhhhH
Confidence 2234566677788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHH---H----------------HHH-----------------
Q psy503 189 IPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYL---A----------------SLR----------------- 232 (333)
Q Consensus 189 ~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~---~----------------a~~----------------- 232 (333)
.++++|++||++|+|+||+++||||+|||+ +++.+ + +.+
T Consensus 200 -~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~----~~l~~~~~~L~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~ 274 (407)
T 3ju1_A 200 -KMGLFLGLTAYHMNAADACYVGLADHYLNR----DDKELMFDAMATLDWSDSPALNHQRLDTMINELSNQVDIPKGDSV 274 (407)
T ss_dssp -THHHHHHHHCCCBCHHHHHHHTSCSEECCG----GGHHHHHHHHHSSCCCSCHHHHHHHHHHHHHHHHTTCSSCCCCCH
T ss_pred -HHHHHHHHcCCcCcHHHHHHCCCccEEcCH----HHHHHHHHHHhcccccccccchhHHHHHHHHHhhhhccccCCchh
Confidence 899999999999999999999999999996 33333 2 221
Q ss_pred -------------------------------H----HHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCC
Q psy503 233 -------------------------------I----AEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGS 277 (333)
Q Consensus 233 -------------------------------~----a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (333)
| ++.|+..+|.+++.+|++++ ++...
T Consensus 275 l~~~~~~I~~~f~~sv~~i~~~L~~~~~~~~~a~~~a~~la~~sP~sl~~tk~~l~---~~~~~---------------- 335 (407)
T 3ju1_A 275 LAESQEMIDRLMAGSLTDIVTRMSTLSTDEAWLSKACATMLAGSPISWHLAYIQTQ---LGTKL---------------- 335 (407)
T ss_dssp HHHTHHHHHHHTCSCHHHHHHHHHHCCCSCHHHHHHHHHHHHSCHHHHHHHHHHHH---TTTCS----------------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcccccHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhcC----------------
Confidence 2 57899999999999999999 77776
Q ss_pred CCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHh-cc-CCCCCCCC
Q psy503 278 KGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFL-GK-YKPVYKGV 333 (333)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~afl-ek-r~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||++||| +| |+|+|++.
T Consensus 336 ----------------~l~~~l~~E~~~~~~~~~s~D~~EGvrAflidKdr~P~w~~~ 377 (407)
T 3ju1_A 336 ----------------SLAQCFKWELTVSVNVCAKGDFCEGVRALLIDKDKQPKWQFA 377 (407)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHSSHHHHHHHHTTSCCCCCCCSSS
T ss_pred ----------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCcCCCCCCC
Confidence 899999999999999999999999999999 87 99999863
|
| >3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-55 Score=406.85 Aligned_cols=241 Identities=20% Similarity=0.277 Sum_probs=225.0
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc--CHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL--NEDQIRSFVSTLR 121 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~--~~~~~~~~~~~~~ 121 (333)
.+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||. |++||+|.|++++... ..+....+...++
T Consensus 34 ~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 112 (276)
T 3rrv_A 34 ADGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGA-GRAFSAGGDFGYLKELSADADLRAKTIRDGR 112 (276)
T ss_dssp EETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCHHHHHHHHHCHHHHHHHHHHHH
T ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCcccCCcCHHHHhhcccchHHHHHHHHHHH
Confidence 378999999999999999999999999999999999999999999999 7999999999987643 2233445667788
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRL 201 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~ 201 (333)
.++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..++++++++|++
T Consensus 113 ~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~ellltG~~ 192 (276)
T 3rrv_A 113 EIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLLAKEYALTGTR 192 (276)
T ss_dssp HHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCCSSHHHHGGGTSCHHHHHHHHHHCCC
T ss_pred HHHHHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCccHHHHHHHHhCHHHHHHHHHcCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q psy503 202 VDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281 (333)
Q Consensus 202 isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (333)
|+|+||+++||||+|+ + ++.+++.++|++|+..+|.+++.+|++++ +....
T Consensus 193 i~A~eA~~~GLv~~vv-~-----~l~~~a~~~A~~la~~~~~a~~~~K~~l~---~~~~~-------------------- 243 (276)
T 3rrv_A 193 ISAQRAVELGLANHVA-D-----DPVAEAIACAKKILELPQQAVESTKRVLN---IHLER-------------------- 243 (276)
T ss_dssp EEHHHHHHHTSCSEEE-S-----SHHHHHHHHHHHHHHSCHHHHHHHHHHHH---HHHHH--------------------
T ss_pred CCHHHHHHcCCHHHHH-H-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHH---Hhhhc--------------------
Confidence 9999999999999999 3 27899999999999999999999999999 66655
Q ss_pred CCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccC
Q psy503 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKY 326 (333)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr 326 (333)
+++++++.|...+..++.++|++||+++|+|||
T Consensus 244 ------------~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR 276 (276)
T 3rrv_A 244 ------------AVLASLDYALSAESQSFVTEDFRSIVTKLADKN 276 (276)
T ss_dssp ------------HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHCCC
T ss_pred ------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence 789999999999999999999999999999997
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-55 Score=402.98 Aligned_cols=242 Identities=21% Similarity=0.270 Sum_probs=205.7
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe-CCCCccccCCCchhhcccCHHHH-HHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRS-LVKDVFCAGADLKHRLTLNEDQI-RSFVSTLRY 122 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g-~~g~~F~~G~Dl~~~~~~~~~~~-~~~~~~~~~ 122 (333)
+++|++||||||+++|++|.+|+.+|.++|++++.|+++++|||+| . |++||+|.|++++........ ..+...+++
T Consensus 7 ~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 85 (250)
T 2a7k_A 7 SDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGA-ERSFSAGGDFNEVKQLSRSEDIEEWIDRVID 85 (250)
T ss_dssp ETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCT-TSCSBCBSCHHHHHTC-CHHHHHHHHHHHHH
T ss_pred eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CCCccCCcCHHHHhhcCchhhHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999 7 899999999998765432222 345566788
Q ss_pred HHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCC
Q psy503 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV 202 (333)
Q Consensus 123 l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~i 202 (333)
++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|++++|..++++++++|++|
T Consensus 86 ~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~a~~l~ltg~~~ 164 (250)
T 2a7k_A 86 LYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAA-ILGFTHGFSTMQEIIYQCQSL 164 (250)
T ss_dssp HHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHH-HHHHHHCHHHHHHHHHHCCCB
T ss_pred HHHHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHH-HHHHHhHHHHHHHHHHcCCcc
Confidence 8999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred CHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCC
Q psy503 203 DSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGES 282 (333)
Q Consensus 203 sa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (333)
+|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 165 ~a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~--------------------- 216 (250)
T 2a7k_A 165 DAPRCVDYRLVNQVVES----SALLDAAITQAHVMASYPASAFINTKRAVN---KPFIH--------------------- 216 (250)
T ss_dssp CHHHHHHHTCCSEEECH----HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHHHH---------------------
T ss_pred cHHHHHHcCCcceecCH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---Hhhhc---------------------
Confidence 99999999999999994 889999999999999999999999999998 66554
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Q psy503 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYK 327 (333)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~ 327 (333)
+++++++.|.+.+..++.++|++||+++|++||+
T Consensus 217 -----------~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~ 250 (250)
T 2a7k_A 217 -----------LLEQTRDASKAVHKAAFQARDAQGHFKNVLGKKY 250 (250)
T ss_dssp -----------HHHHHHHHHHHHCC--------------------
T ss_pred -----------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Confidence 7889999999999999999999999999999985
|
| >3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-56 Score=408.66 Aligned_cols=245 Identities=27% Similarity=0.416 Sum_probs=201.6
Q ss_pred ceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHH
Q psy503 35 TQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIR 114 (333)
Q Consensus 35 ~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~ 114 (333)
+.+.++. +++|++||||||+++|++|.+|+.+|.++|++++.|+++++|||+|. |++||+|.|++++...
T Consensus 9 ~~v~~~~---~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~-g~~F~aG~Dl~~~~~~------ 78 (256)
T 3pe8_A 9 PVLLVDT---TDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGA-DPVFCAGLDLKELGDT------ 78 (256)
T ss_dssp CSEEEEE---ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEES-TTCSBCCBCTTTC---------
T ss_pred CcEEEEE---ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECC-CCCccCCcCHHHHhhh------
Confidence 3455543 78999999999999999999999999999999999999999999999 7899999999987543
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHH
Q psy503 115 SFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKE 194 (333)
Q Consensus 115 ~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~ 194 (333)
..++.+...+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++
T Consensus 79 ---~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~ 155 (256)
T 3pe8_A 79 ---TELPDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARR 155 (256)
T ss_dssp ---------CCCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCHHHHHH
T ss_pred ---HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCHHHHHH
Confidence 12234456788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCC
Q psy503 195 LIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDG 274 (333)
Q Consensus 195 llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~ 274 (333)
++++|++++|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ .....
T Consensus 156 l~ltg~~~~a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~~~---~~~~~------------- 215 (256)
T 3pe8_A 156 MSLTGDYLSAQDALRAGLVTEVVAH----DDLLTAARRVAASIVGNNQKAVRALLDSYH---RIDAL------------- 215 (256)
T ss_dssp HHHHCCCEEHHHHHHHTSCSCEECG----GGHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHHHH-------------
T ss_pred HHHcCCCCCHHHHHHCCCCeEEeCH----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhhcC-------------
Confidence 9999999999999999999999995 789999999999999999999999999999 76665
Q ss_pred CCCCCCCCCCcccccccccCHHHHHHHHHHHHHHH---hcCccHHHHHHHHhccCCCCCC
Q psy503 275 QGSKGGESKGTENQNREFQGRYSGMEWEGICYDRV---IRTQDRVEGLKSFLGKYKPVYK 331 (333)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~---~~~~d~~egi~aflekr~p~~~ 331 (333)
+++++++.|...+... +.++|++|++++|+||+||+|+
T Consensus 216 -------------------~~~~~l~~e~~~~~~~~~~~~~~d~~e~~~aflek~k~~~~ 256 (256)
T 3pe8_A 216 -------------------QTGGALWAEAEAARQWMRSTSGDDIAASRASVIERGRSQVR 256 (256)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHC---------------------
T ss_pred -------------------CHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCccCC
Confidence 7899999999987654 6777889999999999999996
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-55 Score=404.04 Aligned_cols=243 Identities=28% Similarity=0.427 Sum_probs=222.0
Q ss_pred EEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHH
Q psy503 37 IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSF 116 (333)
Q Consensus 37 ~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~ 116 (333)
+.++. +++|++||||||++ |+||.+|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++.....+....+
T Consensus 26 v~~~~---~~~Va~ItlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~ 100 (277)
T 4di1_A 26 VSVVA---DQGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGG-HEIFSAGDDMPELRTLNAPEADTA 100 (277)
T ss_dssp EEEEE---ETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECC-SSCSBCCBCHHHHHTCCHHHHHHH
T ss_pred EEEEE---ECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECC-CCCEecCcCcccccccChHHHHHH
Confidence 44443 79999999999999 99999999999999999999999999999999 899999999999887766666677
Q ss_pred HHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHH
Q psy503 117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELI 196 (333)
Q Consensus 117 ~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~ll 196 (333)
...++.++.+|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..++++++
T Consensus 101 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~ll 180 (277)
T 4di1_A 101 ARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSSRAKELV 180 (277)
T ss_dssp HHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHHHHHHHH
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCC
Q psy503 197 YTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQG 276 (333)
Q Consensus 197 ltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~ 276 (333)
++|++|+|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ .....
T Consensus 181 ltG~~i~A~eA~~~GLV~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~--------------- 238 (277)
T 4di1_A 181 FSGRFFDAEEALALGLIDDMVAP----DDVYDSAVAWARRYLECPPRALAAAKAVIN---DVFEL--------------- 238 (277)
T ss_dssp HHCCCEEHHHHHHHTSCSEEECG----GGHHHHHHHHHHTTTTSCHHHHHHHHHHHH---HTTTS---------------
T ss_pred HcCCCCCHHHHHHCCCccEEeCh----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhhcC---------------
Confidence 99999999999999999999995 789999999999999999999999999999 77665
Q ss_pred CCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC--CCCC
Q psy503 277 SKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPV--YKGV 333 (333)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~--~~~~ 333 (333)
+++++++.|...+..++.++ |||+|+ |+|+
T Consensus 239 -----------------~l~~~l~~e~~~~~~~~~s~----------ekR~P~~~f~g~ 270 (277)
T 4di1_A 239 -----------------EATERAAAERRRYVELFAAG----------QRGPDGRGPGGG 270 (277)
T ss_dssp -----------------CHHHHHHHHHHHHHHTTSGG----------GC----------
T ss_pred -----------------CHHHHHHHHHHHHHHHhcCc----------ccCCCcCcCCCC
Confidence 89999999999999999998 999999 9874
|
| >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-57 Score=413.33 Aligned_cols=254 Identities=24% Similarity=0.329 Sum_probs=197.0
Q ss_pred cccccCccceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhc
Q psy503 27 VSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106 (333)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~ 106 (333)
++.+...++.+.++. +++|++||||||+++|+||.+|+.+|.++|++++.|+++++|||||. |+.||+|.|++++.
T Consensus 4 m~~~~~~~~~v~~~~---~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~ 79 (258)
T 3lao_A 4 MSEANSGPGRVTREQ---RGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAH-GEHFTAGLDLMELA 79 (258)
T ss_dssp -CCSCCSSCCEEEEE---ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCBCHHHHG
T ss_pred ccccCCCCCeEEEEE---ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECC-CCCeecCcCHHHHh
Confidence 344444456666664 78999999999999999999999999999999999999999999999 67799999999886
Q ss_pred ccCHHHHHHHHHHHHHHHHHH-hcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhccc
Q psy503 107 TLNEDQIRSFVSTLRYMTCQL-ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPR 185 (333)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~l-~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r 185 (333)
.........+...+++++.++ ..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r 159 (258)
T 3lao_A 80 PKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPR 159 (258)
T ss_dssp GGCBTTBCCCCTTCCCTTSCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHH
T ss_pred hccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHH
Confidence 543221111222334556778 8999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCC
Q psy503 186 IVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQ 265 (333)
Q Consensus 186 ~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~ 265 (333)
++|..++++++++|++++|+||+++||||+|+|+ +++++++.++|++|+..+|.+++.+|++++ +....
T Consensus 160 ~vG~~~A~~l~ltg~~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~---- 228 (258)
T 3lao_A 160 AAGWTDAMRYILTGDEFDADEALRMRLLTEVVEP----GEELARALEYAERIARAAPLAVRAALQSAF---QGRDE---- 228 (258)
T ss_dssp HHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEECT----TCHHHHHHHHHHHHHHSCHHHHHHHHHHHH---HHTC-----
T ss_pred HhCHHHHHHHHHcCCCCCHHHHHHcCCCcEeeCh----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhhcC----
Confidence 9999999999999999999999999999999996 679999999999999999999999999999 76655
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHh
Q psy503 266 STHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFL 323 (333)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~afl 323 (333)
+++++++.|...+..++.++|++||+++|+
T Consensus 229 ----------------------------~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ 258 (258)
T 3lao_A 229 ----------------------------GDDAALSRVNESLAALIGSEDVREGVLAMV 258 (258)
T ss_dssp ----------------------------------------------------------
T ss_pred ----------------------------CHHHHHHHHHHHHHHHhCCHHHHHHHHhhC
Confidence 789999999999999999999999999996
|
| >3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-55 Score=418.07 Aligned_cols=249 Identities=21% Similarity=0.348 Sum_probs=223.2
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc---CHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFVSTLR 121 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~---~~~~~~~~~~~~~ 121 (333)
+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||.|+++||+|.|++++... .......++...+
T Consensus 13 ~~~v~~itLnrP~~~Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 92 (363)
T 3bpt_A 13 KGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEY 92 (363)
T ss_dssp ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCCHHHHHHHHH
T ss_pred ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcccccHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999955999999999987431 1111223445556
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRL 201 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~ 201 (333)
.++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. ++++|++||++
T Consensus 93 ~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~-~a~~l~ltg~~ 171 (363)
T 3bpt_A 93 MLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGK-LGYFLALTGFR 171 (363)
T ss_dssp HHHHHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHHHHSSTT-HHHHHHHHCCC
T ss_pred HHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCCchHHHHHHHhhHH-HHHHHHHcCCC
Confidence 78889999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred CCHHHHHHcCCcceecCCCCChhHHHHH----------------------------------------------------
Q psy503 202 VDSTEAKSIGLVNTLTPQNPNQNAAYLA---------------------------------------------------- 229 (333)
Q Consensus 202 isa~eAl~~Glv~~vv~~~~~~~~l~~~---------------------------------------------------- 229 (333)
|+|+||+++||||+|+|+ +++.+.
T Consensus 172 i~A~eA~~~GLv~~vv~~----~~l~~~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~f~~~~~ 247 (363)
T 3bpt_A 172 LKGRDVYRAGIATHFVDS----EKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCFSANTV 247 (363)
T ss_dssp EETHHHHHTTSCSEECCG----GGHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCCTTTTCCCTTGGGHHHHHHHTTSSSH
T ss_pred CCHHHHHHCCCcceecCH----HHHHHHHHHHHhcccCCHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHHHHhCCCCH
Confidence 999999999999999996 334321
Q ss_pred --------------HHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCH
Q psy503 230 --------------SLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGR 295 (333)
Q Consensus 230 --------------a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (333)
+.++++.|+..||.+++.+|++++ ++... ++
T Consensus 248 ~ei~~al~~~~~~~a~~~a~~la~~sP~al~~~k~~l~---~~~~~--------------------------------~l 292 (363)
T 3bpt_A 248 EEIIENLQQDGSSFALEQLKVINKMSPTSLKITLRQLM---EGSSK--------------------------------TL 292 (363)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHTTSCHHHHHHHHHHHH---HHTTS--------------------------------CH
T ss_pred HHHHHHHhccChHHHHHHHHHHHhCCchHHHHHHHHHH---HHHhC--------------------------------CH
Confidence 115788999999999999999999 76665 89
Q ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHh-cc-CCCCCCCC
Q psy503 296 YSGMEWEGICYDRVIRTQDRVEGLKSFL-GK-YKPVYKGV 333 (333)
Q Consensus 296 ~~~l~~e~~~~~~~~~~~d~~egi~afl-ek-r~p~~~~~ 333 (333)
+++++.|...+..++.++|++||++||+ +| |+|+|+++
T Consensus 293 ~~~l~~E~~~~~~~~~s~D~~EGv~Afl~eK~r~P~~~~~ 332 (363)
T 3bpt_A 293 QEVLTMEYRLSQACMRGHDFHEGVRAVLIDKDQSPKWKPA 332 (363)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHTTSCCCCCCCSSC
T ss_pred HHHHHHHHHHHHHHhcCccHHhhhhheeeCCCCCCCCCCC
Confidence 9999999999999999999999999999 78 99999874
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-54 Score=397.61 Aligned_cols=241 Identities=20% Similarity=0.285 Sum_probs=212.3
Q ss_pred ecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc------CHHHHHHH
Q psy503 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL------NEDQIRSF 116 (333)
Q Consensus 43 ~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~------~~~~~~~~ 116 (333)
..+++|++||||||++ |+||.+|+.+|.++|+.++.|+++++|||||. |++||+|.|++++... ..+....+
T Consensus 12 ~~~~~v~~itlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 89 (263)
T 3l3s_A 12 VLSEGVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGP-GRIFCAGHDLKEIGRHRADPDEGRAFVTDL 89 (263)
T ss_dssp EESSSEEEEEECSTTT-CCCCHHHHHHHHHHHHHHHTCTTCCEEEEECC-SSEEECCSCSCCCCC-----CCSHHHHHHH
T ss_pred EeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCccCCcChHHHhhccccccccHHHHHHH
Confidence 3489999999999999 99999999999999999999999999999999 7999999999988654 23445567
Q ss_pred HHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHH
Q psy503 117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELI 196 (333)
Q Consensus 117 ~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~ll 196 (333)
...++.++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ ++|++++|++++|..++++++
T Consensus 90 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~-~~g~~~~l~r~vG~~~A~~l~ 168 (263)
T 3l3s_A 90 FEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGF-CTTPAVAVSRVIGRRAVTEMA 168 (263)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSC-CHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCC-CccHHHHHHHHcCHHHHHHHH
Confidence 7788899999999999999999999999999999999999999999999999999999 577889999999999999999
Q ss_pred HcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCC
Q psy503 197 YTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQG 276 (333)
Q Consensus 197 ltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~ 276 (333)
++|++++|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ .....
T Consensus 169 ltg~~~~A~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~--------------- 226 (263)
T 3l3s_A 169 LTGATYDADWALAAGLINRILPE----AALATHVADLAGALAARNQAPLRRGLETLN---RHLEL--------------- 226 (263)
T ss_dssp HHCCEEEHHHHHHHTSSSEECCH----HHHHHHHHHHHHHHHSSCHHHHHHHHHHHH---HHTTS---------------
T ss_pred HcCCCCCHHHHHHCCCccEEeCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhcC---------------
Confidence 99999999999999999999994 889999999999999999999999999999 76665
Q ss_pred CCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcc
Q psy503 277 SKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGK 325 (333)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflek 325 (333)
+++++++.|.+.+..++.++|++||++||.+.
T Consensus 227 -----------------~l~~~l~~e~~~~~~~~~s~d~~Eg~~Af~~~ 258 (263)
T 3l3s_A 227 -----------------PLEQAYALATPVMVEHFMDPGRRHLDWIDEGH 258 (263)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHC--------------
T ss_pred -----------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcc
Confidence 89999999999999999999999999999774
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-54 Score=395.91 Aligned_cols=238 Identities=22% Similarity=0.317 Sum_probs=211.9
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
.+++|++||||||+++|++|.+|+.+|.++|+.++. +++++|||+|. |++||+|.|++++...........+..++.+
T Consensus 13 ~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~-~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 90 (254)
T 3isa_A 13 RRPAAWTFTLSRPEKRNALSAELVEALIDGVDAAHR-EQVPLLVFAGA-GRNFSAGFDFTDYETQSEGDLLLRMVRIEML 90 (254)
T ss_dssp ECSSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHH-TTCSEEEEEES-TTCSCCCBCCTTCTTSCHHHHHHHHHHHHHH
T ss_pred EECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEECC-CCceeeCcChHHhhccCchhHHHHHHHHHHH
Confidence 379999999999999999999999999999999987 58999999999 7999999999998776555444455567889
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++++|++++|..++++++++|++++
T Consensus 91 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p---g~~~l~~~vG~~~A~~l~ltg~~~~ 167 (254)
T 3isa_A 91 LQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVL---GTRRFRDIVGADQALSILGSARAFD 167 (254)
T ss_dssp HHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCC---SHHHHHHHHCHHHHHHHHTTTCEEE
T ss_pred HHHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccCccH---HHHHHHHHcCHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999999999999999999999999998 3689999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+|+|+ +++.+++.+++++++..+|.+++.+|+.++ ..
T Consensus 168 a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~------------------------- 215 (254)
T 3isa_A 168 ADEARRIGFVRDCAAQ----AQWPALIDAAAEAATALDPATRATLHRVLR---DD------------------------- 215 (254)
T ss_dssp HHHHHHTTSSSEECCG----GGHHHHHHHHHHHHTTSCHHHHHHHHHHHS---CC-------------------------
T ss_pred HHHHHHCCCccEEeCh----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHh---hh-------------------------
Confidence 9999999999999995 789999999999999999999999999997 32
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
. ++.|...+..++.++|++||+++|+|||+|.|+.
T Consensus 216 ----------~----~~~e~~~~~~~~~s~d~~egi~af~ekr~p~~~~ 250 (254)
T 3isa_A 216 ----------H----DDADLAALARSAAQPGFKARIRDYLAQPAAEGHH 250 (254)
T ss_dssp ----------C----HHHHHHHHHHHHHSTTHHHHHHHHHHC-------
T ss_pred ----------h----HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC
Confidence 2 2356778888999999999999999999999964
|
| >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-54 Score=400.90 Aligned_cols=247 Identities=22% Similarity=0.294 Sum_probs=223.4
Q ss_pred cceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHH
Q psy503 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQI 113 (333)
Q Consensus 34 ~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~ 113 (333)
++.+.++. +++|++||||||+ .|+||.+|+.+|.++|+.++.|+++++|||||.|+++||+|.|++++.....+..
T Consensus 7 ~~~v~~~~---~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~~ 82 (289)
T 3h0u_A 7 YETIKARL---DGTVLSATFNAPP-MNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAA 82 (289)
T ss_dssp CSSEEEEE---ETTEEEEEECCTT-TCCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHH
T ss_pred CCeEEEEE---ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcchh
Confidence 44566554 6899999999998 7999999999999999999999999999999995567778889998765322211
Q ss_pred H---HHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCC-eEEeccccccCccCChhhhhhcccccCH
Q psy503 114 R---SFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGLVETKLAIIPGAGGTQRLPRIVGI 189 (333)
Q Consensus 114 ~---~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~-a~f~~pe~~~Gl~p~~g~~~~L~r~iG~ 189 (333)
. .+...++.++.++..+||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|++++|.
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~ 162 (289)
T 3h0u_A 83 KAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGR 162 (289)
T ss_dssp TTSSTTCCSHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHHCH
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHHhCH
Confidence 1 23445778899999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCC
Q psy503 190 PLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHS 269 (333)
Q Consensus 190 ~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~ 269 (333)
.++++++++|++|+|+||+++||||+|+|+ +++.+++.++|++|+..||.+++.+|++++ ....
T Consensus 163 ~~A~ellltG~~i~A~eA~~~GLV~~vv~~----~~l~~~a~~lA~~la~~~p~a~~~~K~~l~---~~~~--------- 226 (289)
T 3h0u_A 163 GRALEAVLTSSDFDADLAERYGWVNRAVPD----AELDEFVAGIAARMSGFPRDALIAAKSAIN---AISL--------- 226 (289)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSSSEEECH----HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHHS---------
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCccEecCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhcc---------
Confidence 999999999999999999999999999995 889999999999999999999999999998 5432
Q ss_pred CCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhc
Q psy503 270 PGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLG 324 (333)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~afle 324 (333)
+++++++.|...+..++.++|++||+++|+|
T Consensus 227 ------------------------~l~~~l~~e~~~~~~~~~s~d~~egi~AFle 257 (289)
T 3h0u_A 227 ------------------------PAPAEVRADAALFQQLVRGEKVQQRTAELFK 257 (289)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred ------------------------cHHHHHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 5788999999999999999999999999999
|
| >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-53 Score=387.87 Aligned_cols=236 Identities=17% Similarity=0.274 Sum_probs=216.2
Q ss_pred ecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHH
Q psy503 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY 122 (333)
Q Consensus 43 ~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 122 (333)
+.+++|++||||||+++|++|.+|+.+|.++|++++.|+++++|||||. |++||+|.|++++........ ..++
T Consensus 8 ~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~-----~~~~ 81 (243)
T 2q35_A 8 ELGNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGY-GNYFSSGASKEFLIRKTRGEV-----EVLD 81 (243)
T ss_dssp EEETTEEEEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECB-TTEEECBSCHHHHHHHHTTCC-----CCCC
T ss_pred EeeCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCeeCCCChHHHhhccchhh-----HHHH
Confidence 3478999999999999999999999999999999999999999999999 799999999988643110000 1245
Q ss_pred HHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCC
Q psy503 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV 202 (333)
Q Consensus 123 l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~i 202 (333)
++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|+++
T Consensus 82 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~ 161 (243)
T 2q35_A 82 LSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENY 161 (243)
T ss_dssp CHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCE
T ss_pred HHHHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHHHHHHHHHcCCCC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCC
Q psy503 203 DSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGES 282 (333)
Q Consensus 203 sa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (333)
+|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 162 ~a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~--------------------- 213 (243)
T 2q35_A 162 RGKELAERGIPFPVVSR----QDVLNYAQQLGQKIAKSPRLSLVALKQHLS---ADIKA--------------------- 213 (243)
T ss_dssp EHHHHHHTTCSSCEECH----HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH---HHHHH---------------------
T ss_pred CHHHHHHcCCCCEecCh----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---Hhhhc---------------------
Confidence 99999999999999994 889999999999999999999999999999 66554
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHh
Q psy503 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFL 323 (333)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~afl 323 (333)
+++++++.|...+..++.++|++||+++|+
T Consensus 214 -----------~~~~~~~~e~~~~~~~~~s~d~~eg~~a~~ 243 (243)
T 2q35_A 214 -----------KFPEAIKKELEIHQVTFNQPEIASRIQQEF 243 (243)
T ss_dssp -----------HHHHHHHHHHHHHHHHHSSTTHHHHHHTTC
T ss_pred -----------CHHHHHHHHHHHHHHHhCCHHHHHHHhhcC
Confidence 688999999999999999999999999874
|
| >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-52 Score=386.88 Aligned_cols=215 Identities=19% Similarity=0.190 Sum_probs=190.0
Q ss_pred ceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCH----
Q psy503 35 TQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE---- 110 (333)
Q Consensus 35 ~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~---- 110 (333)
+.+.++. +++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||. |++||+|.|++++.....
T Consensus 9 ~~i~~~~---~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~ 84 (280)
T 1pjh_A 9 EKISYRI---EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSS-GRFFSSGADFKGIAKAQGDDTN 84 (280)
T ss_dssp TTEEEEE---ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECB-TTBSBCCBCHHHHHC-------
T ss_pred CceEEEE---ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCccCCcCHHHHhhccccccc
Confidence 3355544 68999999999999999999999999999999999999999999999 799999999998753210
Q ss_pred ---HHH----HHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEe-CCeEEeccccccCccCChhhhhh
Q psy503 111 ---DQI----RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA-SNVRMGLVETKLAIIPGAGGTQR 182 (333)
Q Consensus 111 ---~~~----~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias-~~a~f~~pe~~~Gl~p~~g~~~~ 182 (333)
+.. ..++..++.++..+..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~~ 164 (280)
T 1pjh_A 85 KYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVS 164 (280)
T ss_dssp CCSSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHHH
Confidence 111 1222334678889999999999999999999999999999999999 99999999999999999999999
Q ss_pred cccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCC-ChhHHHHHHH-HHHHHHhhcCHHHHHHHHHHhc
Q psy503 183 LPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNP-NQNAAYLASL-RIAEDIAHNGPIAVRMAKRSID 253 (333)
Q Consensus 183 L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~-~~~~l~~~a~-~~a~~ia~~~~~a~~~~K~~l~ 253 (333)
|++++|..++++++++|++|+|+||+++||||+|+|+++ +.+++.+++. ++|++|+..+|.+++.+|++++
T Consensus 165 l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~~~~~~l~~~a~~~~a~~la~~~~~a~~~~K~~l~ 237 (280)
T 1pjh_A 165 LPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLK 237 (280)
T ss_dssp HHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHhCCCCCHHHHHHCCCcceeeCCccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999621 1147888885 9999999999999999999999
|
| >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-52 Score=382.14 Aligned_cols=247 Identities=19% Similarity=0.250 Sum_probs=215.1
Q ss_pred ccccccCccceEEEEeeecCC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchh
Q psy503 26 SVSKEGRKLTQIIYHNSPERP-GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104 (333)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~-~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~ 104 (333)
++-....+++.+.++. ++ +|++||||||++.|++|.+|+.+|.++|++++.|+++++|||+|. |++||+|.|+++
T Consensus 14 ~~~~~~~~~~~i~~~~---~~~~Va~ItLnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~ 89 (263)
T 2j5g_A 14 NQPEYFTKYENLHFHR---DENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGS-GDAWMAEIDFPS 89 (263)
T ss_dssp -CCGGGGSCTTEEEEE---CTTCEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECB-TTEEECEECSGG
T ss_pred CcccccCCCCeEEEEE---cCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECC-CCCcccCcCHHH
Confidence 3334444455555554 56 899999999999999999999999999999999999999999998 799999999998
Q ss_pred hccc-CHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEec-cccccCccCChhhhhh
Q psy503 105 RLTL-NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL-VETKLAIIPGAGGTQR 182 (333)
Q Consensus 105 ~~~~-~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~-pe~~~Gl~p~~g~~~~ 182 (333)
+... ..+....++..++.++.++..+||||||+|||+|+ ||++|+++||+|||+++++|++ ||+++|++|++|++++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~ 168 (263)
T 2j5g_A 90 LGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHIL 168 (263)
T ss_dssp GCCTTSHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHHH
Confidence 7653 22333345556778889999999999999999999 6999999999999999999999 9999999999999999
Q ss_pred cccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCccc
Q psy503 183 LPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYR 262 (333)
Q Consensus 183 L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~ 262 (333)
|++++|..++++++++|++|+|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ +....
T Consensus 169 L~r~vG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~- 240 (263)
T 2j5g_A 169 WPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQ----SKLMERAWEIARTLAKQPTLNLRYTRVALT---QRLKR- 240 (263)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEHHHHHHTTSCSEEECG----GGHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHHHH-
T ss_pred HHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccEecCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhhc-
Confidence 9999999999999999999999999999999999995 789999999999999999999999999998 55443
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Q psy503 263 DGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYK 327 (333)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~ 327 (333)
++++++..|. ..|||++|++||.
T Consensus 241 -------------------------------~l~~~l~~e~-----------~~eg~~af~~~~~ 263 (263)
T 2j5g_A 241 -------------------------------LVNEGIGYGL-----------ALEGITATDLRNT 263 (263)
T ss_dssp -------------------------------HHHHHHHHHH-----------HHHHHHHHHTTC-
T ss_pred -------------------------------cHHHHHHHHH-----------HHhhHHHHHhccC
Confidence 5666655543 4599999999973
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=392.35 Aligned_cols=215 Identities=24% Similarity=0.303 Sum_probs=188.8
Q ss_pred CccceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHH
Q psy503 32 RKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNED 111 (333)
Q Consensus 32 ~~~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~ 111 (333)
.+++.+.++. +++|++||||||+++|+||.+|+.+|.++|++++.|+++++|||+|. |++||+|.|++++......
T Consensus 32 ~~~~~i~~e~---~~~Va~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~-G~~FcaG~Dl~~~~~~~~~ 107 (333)
T 3njd_A 32 DNLKTMTYEV---TDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGR-GEGFCAGFDLSAYAEGSSS 107 (333)
T ss_dssp TSCSSEEEEE---ETTEEEEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEES-TTSSBCCBC----------
T ss_pred CCCCeEEEEE---ECCEEEEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECC-CCceecCcCHHHHhhcccc
Confidence 4466677765 78999999999999999999999999999999999999999999999 7999999999987543211
Q ss_pred ------------------------------HHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCC
Q psy503 112 ------------------------------QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161 (333)
Q Consensus 112 ------------------------------~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~ 161 (333)
....++..++.++..|..+||||||+|||+|+|||++|+++||+|||+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~ 187 (333)
T 3njd_A 108 AGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAAD 187 (333)
T ss_dssp -----CCTTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTT
T ss_pred cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCC
Confidence 11244566778888999999999999999999999999999999999999
Q ss_pred eEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcC
Q psy503 162 VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNG 241 (333)
Q Consensus 162 a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~ 241 (333)
++|++||+++|++|+.| +|++++|..+|++|+++|+.|+|+||+++||||+|||+ +++.+++.++|++|+..|
T Consensus 188 a~f~~pe~~lG~~P~~g---~l~~~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~----~~l~~~a~~lA~~ia~~~ 260 (333)
T 3njd_A 188 AKIGYPPMRVWGVPAAG---LWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDP----ADLDARTERLVERIAAMP 260 (333)
T ss_dssp CEEECGGGGTTCCCTTC---CHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSSSBCCCG----GGHHHHHHHHHHHHHTSC
T ss_pred CeeechhhceeccCHHH---HHHHHHHHHHHHHHHhcCCCCCHHHHHHCCCccEecCh----HHHHHHHHHHHHHHHcCC
Confidence 99999999999999875 57899999999999999999999999999999999995 789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCc
Q psy503 242 PIAVRMAKRSIDGPGRGTQ 260 (333)
Q Consensus 242 ~~a~~~~K~~l~~~~~~~~ 260 (333)
|.+++.+|++++ +...
T Consensus 261 ~~al~~~K~~l~---~~~~ 276 (333)
T 3njd_A 261 VNQLIMAKLACN---TALL 276 (333)
T ss_dssp HHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHH---HHHH
Confidence 999999999999 6543
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-49 Score=372.98 Aligned_cols=251 Identities=20% Similarity=0.264 Sum_probs=219.0
Q ss_pred CccceEEEEeeecCCCEEEEEEcCCCC----CCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEeCCCCccccCCCc
Q psy503 32 RKLTQIIYHNSPERPGIVELCMNRPQA----RNALNATLVEEILTAVEAIRG-----DEEVRCVLLRSLVKDVFCAGADL 102 (333)
Q Consensus 32 ~~~~~~~~~~~~~~~~v~~Itln~p~~----~Nalt~~~~~eL~~~l~~~~~-----d~~v~vvVl~g~~g~~F~~G~Dl 102 (333)
..|+.+.+.+ +.+++|++||||||+| +|+||.+|+.+|.++|+.++. |+++++|||+|. |++||+|.|+
T Consensus 27 ~~y~~i~v~~-~~~~~V~~itLnrp~k~n~~rpal~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~-G~~FcaG~Dl 104 (305)
T 3m6n_A 27 NIGSTLRIIE-EPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASD-SDVFNLGGDL 104 (305)
T ss_dssp --CTTEEEEE-ETTTTEEEEEECTTC-----CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEES-SSSSBCCBCH
T ss_pred cCCceEEEEE-EEECCEEEEEECCccccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECC-CCCeecCcCH
Confidence 4467777765 3588999999999998 559999999999999999987 589999999998 8999999999
Q ss_pred hhhccc----CHHHHHHHHHHHHHHHHHH---hcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccC
Q psy503 103 KHRLTL----NEDQIRSFVSTLRYMTCQL---ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIP 175 (333)
Q Consensus 103 ~~~~~~----~~~~~~~~~~~~~~l~~~l---~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p 175 (333)
+++... ..+....+...+...+..+ ..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p 184 (305)
T 3m6n_A 105 ALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFP 184 (305)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCC
T ss_pred HHHHhccccccHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCC
Confidence 987643 2222333444444555444 468999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhcccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCC
Q psy503 176 GAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGP 255 (333)
Q Consensus 176 ~~g~~~~L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~ 255 (333)
++|++++|++++|..++++++++|++|+|+||+++||||+|+|+ +++.+++.++|++|+. +|.+++.+|++++
T Consensus 185 ~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~-~p~a~~~~K~~l~-- 257 (305)
T 3m6n_A 185 GMGAYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPR----GQGVAAVEQVIRESKR-TPHAWAAMQQVRE-- 257 (305)
T ss_dssp CSSHHHHHTTTSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECT----TCHHHHHHHHHHHHTT-CHHHHHHHHHHHH--
T ss_pred CccHHHHHHHHhcHHHHHHHHHcCCCCCHHHHHHCCCCCEecCh----hHHHHHHHHHHHHHhh-ChHHHHHHHHHHH--
Confidence 99999999999999999999999999999999999999999996 6799999999999986 8999999999999
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhc
Q psy503 256 GRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLG 324 (333)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~afle 324 (333)
..... +++++++.|...+..++.++|....+...+-
T Consensus 258 -~~~~~--------------------------------~l~~~l~~e~~~~~~~~~s~d~~~~~m~~l~ 293 (305)
T 3m6n_A 258 -MTTAV--------------------------------PLEEMMRITEIWVDTAMQLGEKSLRTMDRLV 293 (305)
T ss_dssp -TTTCC--------------------------------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred -hhhcC--------------------------------CHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 77666 8999999999999999999998777766543
|
| >3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-50 Score=365.89 Aligned_cols=220 Identities=17% Similarity=0.141 Sum_probs=203.1
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|++||||||+ .|++|.+|+.+|.+++++++.| ++++|||||. |++||+|.|++++.....+....+...+++++
T Consensus 12 ~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d-~vr~vvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (233)
T 3r6h_A 12 DDAIGVIRMDDGK-VNVLGPTMQQALNEAIDAADRD-NVGALVIAGN-HRVFSGGFDLKVLTSGEAKPAIDMLRGGFELS 88 (233)
T ss_dssp ETTEEEEEECCSS-SCCCSHHHHHHHHHHHHHHHHH-TCSEEEEECC-SSEEECCSCHHHHC---CHHHHHHHHHHHHHH
T ss_pred ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEECC-CCCccCCcChHHHhccChHHHHHHHHHHHHHH
Confidence 7899999999985 7999999999999999999987 5899999998 89999999999987654455566777888999
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCH
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDS 204 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa 204 (333)
.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|
T Consensus 89 ~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~~a~~l~ltg~~~~a 168 (233)
T 3r6h_A 89 YRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFG 168 (233)
T ss_dssp HHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHHHHHSCHHHHHHHHHSCCEECH
T ss_pred HHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q psy503 205 TEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284 (333)
Q Consensus 205 ~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (333)
+||+++||||+|+|+ +++.+++.++|++|+..||.+++.+|++++ +....
T Consensus 169 ~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~----------------------- 218 (233)
T 3r6h_A 169 ETALAAGFIDEISLP----EVVLSRAEEAAREFAGLNQQAHNATKLRAR---AEALK----------------------- 218 (233)
T ss_dssp HHHHHHTSCSEECCG----GGHHHHHHHHHHHHHTSCHHHHHHHHHHTT---HHHHH-----------------------
T ss_pred HHHHHcCCCcEeeCH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHHHh-----------------------
Confidence 999999999999995 789999999999999999999999999999 76655
Q ss_pred cccccccccCHHHHHHHHHHHH
Q psy503 285 TENQNREFQGRYSGMEWEGICY 306 (333)
Q Consensus 285 ~~~~~~~~~~~~~~l~~e~~~~ 306 (333)
+++++++.|...|
T Consensus 219 ---------~l~~~l~~e~~~f 231 (233)
T 3r6h_A 219 ---------AIRAGIDGIEAEF 231 (233)
T ss_dssp ---------HHHHHHHTSHHHH
T ss_pred ---------HHHHHHHHHHHHh
Confidence 7888888887765
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=365.90 Aligned_cols=208 Identities=21% Similarity=0.297 Sum_probs=192.4
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|++||||||++.|++|.+|+.+|.++|+.++.|+++++|||||. |++||+|.|++++.....+....+...+++++
T Consensus 23 ~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 101 (257)
T 1szo_A 23 DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGT-GPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLL 101 (257)
T ss_dssp ETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECB-TTBSBCEECGGGSCCSSHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcC-CCccccCcCchhhhcCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 78999999999876433333334455667888
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEec-cccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL-VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~-pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
.++..+||||||+|||+|+ ||++|+++||+||++++++|++ ||+++|++|++|++++|++++|..++++++++|++++
T Consensus 102 ~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~llltG~~~~ 180 (257)
T 1szo_A 102 NNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELD 180 (257)
T ss_dssp HHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHHHHHTTCEEE
T ss_pred HHHHcCCCcEEEEECCchH-HHHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHHHHHHHHHcCCCCC
Confidence 9999999999999999999 5999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcc
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQY 261 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~ 261 (333)
|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ +....
T Consensus 181 A~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~ 231 (257)
T 1szo_A 181 ARTALDYGAVNEVLSE----QELLPRAWELARGIAEKPLLARRYARKVLT---RQLRR 231 (257)
T ss_dssp HHHHHHHTSCSEEECH----HHHHHHHHHHHHHHHTSCHHHHHHHHHHHS---HHHHH
T ss_pred HHHHHHCCCceEEeCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhhc
Confidence 9999999999999984 889999999999999999999999999998 65544
|
| >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-49 Score=359.86 Aligned_cols=218 Identities=17% Similarity=0.240 Sum_probs=200.9
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|++||||||+ .|++|.+|+.+|.+++++++.| +++|||||. |++||+|.|++++... .+....+...++.++
T Consensus 13 ~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d--~~~vvltg~-g~~F~aG~Dl~~~~~~-~~~~~~~~~~~~~~~ 87 (232)
T 3ot6_A 13 DDGVATLTLNNGK-VNAISPDVIIAFNAALDQAEKD--RAIVIVTGQ-PGILSGGYDLKVMTSS-AEAAINLVAQGSTLA 87 (232)
T ss_dssp ETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHHT--TCEEEEECB-TEEEECCBCHHHHHHC-HHHHHHHHHHHHHHH
T ss_pred ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcC--CCEEEEECC-CCCccCCcCHHHHhhC-hHHHHHHHHHHHHHH
Confidence 7899999999985 7999999999999999999976 489999999 8999999999998653 344556677788999
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCC-eEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~-a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
.++..+||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++++++++++++|..++++++++|++++
T Consensus 88 ~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~~a~~l~ltg~~i~ 167 (232)
T 3ot6_A 88 RRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVINAEMFD 167 (232)
T ss_dssp HHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHHHHHHHHTSCCEEC
T ss_pred HHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhCHHHHHHHHHcCCccC
Confidence 9999999999999999999999999999999999998 899999999999988888889999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ +....
T Consensus 168 A~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~---------------------- 218 (232)
T 3ot6_A 168 PEGAMAAGFLDKVVSV----EELQGAALAVAAQLKKINMNAHKKTKLKVR---KGLLD---------------------- 218 (232)
T ss_dssp HHHHHHHTSCSEEECT----TTHHHHHHHHHHHHTTSCHHHHHHHHHHHH---HHHHH----------------------
T ss_pred HHHHHHCCCCCEecCH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHhHh----------------------
Confidence 9999999999999996 779999999999999999999999999999 76655
Q ss_pred CcccccccccCHHHHHHHHHHHH
Q psy503 284 GTENQNREFQGRYSGMEWEGICY 306 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~ 306 (333)
+++++++.|.+.|
T Consensus 219 ----------~l~~~l~~E~~~~ 231 (232)
T 3ot6_A 219 ----------TLDAAIEQDRQHM 231 (232)
T ss_dssp ----------HHHHHHHHHHHHC
T ss_pred ----------HHHHHHHHHHHhc
Confidence 7899998887754
|
| >3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-49 Score=366.58 Aligned_cols=247 Identities=25% Similarity=0.360 Sum_probs=204.2
Q ss_pred cceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCH---
Q psy503 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE--- 110 (333)
Q Consensus 34 ~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~--- 110 (333)
++.+.++. +++|++||||||+++|+||.+|+.+|.++|++++.|+++++|||+|. |++||+|.|++++.....
T Consensus 19 ~~~v~~~~---~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-G~~F~aG~Dl~~~~~~~~~~~ 94 (279)
T 3t3w_A 19 EMYIDYDV---SDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRAN-GKHFSAGHDLRGGGPVPDKLT 94 (279)
T ss_dssp CCSEEEEE---ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEC-SSCSBCCBCCC--------CC
T ss_pred CCeEEEEE---ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECC-CCceeeccChHhhhhcccccc
Confidence 44566554 68999999999999999999999999999999999999999999999 799999999998765321
Q ss_pred -H-HHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccC
Q psy503 111 -D-QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188 (333)
Q Consensus 111 -~-~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG 188 (333)
. ........++.++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |+.++.. +++++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl-~~~~~~~-~~~~vG 172 (279)
T 3t3w_A 95 LEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDI-GGVEYHG-HTWELG 172 (279)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTC-SSCSSCC-HHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCC-CCchHHH-HHhhcC
Confidence 1 11223345667888999999999999999999999999999999999999999999999999 5444443 399999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCC
Q psy503 189 IPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTH 268 (333)
Q Consensus 189 ~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~ 268 (333)
..++++++++|++++|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ +..+.
T Consensus 173 ~~~A~~llltG~~i~A~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~------- 238 (279)
T 3t3w_A 173 PRKAKEILFTGRAMTAEEVAQTGMVNRVVPR----DRLDAETRALAGEIAKMPPFALRQAKRAVN---QTLDV------- 238 (279)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHHTSCSEEECG----GGHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHHHH-------
T ss_pred HHHHHHHHHcCCccCHHHHHHCCCCcEeeCh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---Hhhhc-------
Confidence 9999999999999999999999999999995 789999999999999999999999999998 55432
Q ss_pred CCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 269 SPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
++++++++.+ +...+..|+. +|.+.+.|.|.|
T Consensus 239 ------------------------~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~ 270 (279)
T 3t3w_A 239 ------------------------QGFYAAIQSV-------FDIHQTGHGN-AMSVSGWPVLVD 270 (279)
T ss_dssp ------------------------TTHHHHHHHH-------HHHHHHHHHH-HHHHTSSCC---
T ss_pred ------------------------ccHHHHHHHH-------hhHHHHHHHH-HHHhcCCccccC
Confidence 1455555444 3445566666 788888888776
|
| >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-49 Score=384.40 Aligned_cols=242 Identities=27% Similarity=0.299 Sum_probs=202.3
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC--------CCCccccCCCchhhcccC--HHH--
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSL--------VKDVFCAGADLKHRLTLN--EDQ-- 112 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~--------~g~~F~~G~Dl~~~~~~~--~~~-- 112 (333)
+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||. |+++||+|.|++++.... ...
T Consensus 174 ~~gVa~ItLNRP~k~NALs~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~~~~~~~~~~ 253 (440)
T 2np9_A 174 RDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQGGISLVDFL 253 (440)
T ss_dssp ETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHTTCCCTTTTH
T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhccCcchhhhh
Confidence 78999999999999999999999999999999999999999999994 348999999999875421 111
Q ss_pred HHHHHHHHHHHHHHH------------hcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhh
Q psy503 113 IRSFVSTLRYMTCQL------------ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGT 180 (333)
Q Consensus 113 ~~~~~~~~~~l~~~l------------~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~ 180 (333)
.......++.++..+ ..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +
T Consensus 254 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~lGl~P~~g-~ 332 (440)
T 2np9_A 254 MRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPGAA-N 332 (440)
T ss_dssp HHHHHTHHHHHHHCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTTCCCCTTH-H
T ss_pred hHHHHHHHHHHHHHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhccCcCcchH-H
Confidence 111122344555544 479999999999999999999999999999999999999999999999887 5
Q ss_pred hhcccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCc
Q psy503 181 QRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQ 260 (333)
Q Consensus 181 ~~L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~ 260 (333)
++|++++|..++++|+++|+.|+|+||+++||||+|||+ +++.+++.+++++|+ +.+++.+|++++ ....
T Consensus 333 ~~L~rlvG~~~A~ellLtG~~i~A~EA~~~GLV~~Vvp~----~eL~~~a~~~A~~la---~~Av~~~K~~l~---~~~~ 402 (440)
T 2np9_A 333 LRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEP----DELDAAIERSLTRLD---GDAVLANRRMLN---LADE 402 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEETTSGGGGGTCSEEECH----HHHHHHHHHHHHTTC---SHHHHHHHHHHH---HHHS
T ss_pred HHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCh----HHHHHHHHHHHHHhC---HHHHHHHHHHHH---hhhc
Confidence 799999999999999999999999999999999999995 789999999988774 478999999998 5422
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Q psy503 261 YRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYK 327 (333)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~ 327 (333)
. .....+.+..|...+..++.++|++||+++|+|||+
T Consensus 403 ~------------------------------~~~~~~~l~~e~~~~~~~~~s~D~~Egv~AFleKR~ 439 (440)
T 2np9_A 403 S------------------------------PDGFRAYMAEFALMQALRLYGHDVIDKVGRFGGRPP 439 (440)
T ss_dssp C------------------------------HHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCC----
T ss_pred c------------------------------hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCCC
Confidence 1 002335566777778888999999999999999986
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-48 Score=400.71 Aligned_cols=237 Identities=27% Similarity=0.463 Sum_probs=213.3
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
.+++|++||||||+ .|+||.+|+.+|.++|++++.|+++++|||||. |+.||+|.|++++....... .++.+
T Consensus 27 ~~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aGaDl~~~~~~~~~~------~~~~~ 98 (742)
T 3zwc_A 27 LPHSLAMIRLCNPP-VNAVSPTVIREVRNGLQKAGSDHTVKAIVICGA-NGNFCAGADIHGFSAFTPGL------ALGSL 98 (742)
T ss_dssp CSTTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEES-TTCSBCCBCSSSCCSSCSCS------HHHHH
T ss_pred eeCCEEEEEeCCCc-ccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECC-CCccccCcChHhhhccChhH------HHHHH
Confidence 47999999999997 799999999999999999999999999999999 89999999999987654332 24567
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+.+|.+++|||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|..+|++|++||+.++
T Consensus 99 ~~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~~A~~l~ltG~~i~ 178 (742)
T 3zwc_A 99 VDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLS 178 (742)
T ss_dssp HHHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCCCEE
T ss_pred HHHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHHhhhHHHHHHHHHcCCchh
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHH----------------------------------HHHHHH
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPI----------------------------------AVRMAK 249 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~----------------------------------a~~~~K 249 (333)
|+||+++||||+|+|+ + .+++|.++|++|+..++. |...++
T Consensus 179 a~eA~~~GLv~~vv~~----d-~~~~A~~~A~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~A~~~~~ 253 (742)
T 3zwc_A 179 ADEALRLGILDAVVKS----D-PVEEAIKFAQKIIDKPIEPRRIFNKPVPSLPNMDSVFAEAIAKVRKQYPGVLAPETCV 253 (742)
T ss_dssp HHHHHHHTSCSEEESS----C-HHHHHHHHHHHHTTSCSGGGCGGGSCCCCCTTHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHcCCccEecCc----h-hhHHHHHHHHHHhcCCchhhhhhcccccccchhhhhHHHHHHHHhhhccchhHHHHHH
Confidence 9999999999999985 3 467899999999987753 444455
Q ss_pred HHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCC
Q psy503 250 RSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKP 328 (333)
Q Consensus 250 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p 328 (333)
++++ .+... ++++++..|.+.|..++.|++.++++.+|+++|++
T Consensus 254 ~~v~---~~~~~--------------------------------~~~~gl~~E~~~F~~l~~s~~~k~~~~aFf~~r~~ 297 (742)
T 3zwc_A 254 RSIQ---ASVKH--------------------------------PYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSA 297 (742)
T ss_dssp HHHH---HHHHS--------------------------------CHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHT
T ss_pred HHHH---HHhhC--------------------------------CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Confidence 5555 44443 89999999999999999999999999999987653
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-47 Score=394.09 Aligned_cols=245 Identities=31% Similarity=0.469 Sum_probs=218.3
Q ss_pred CCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc---CHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFVSTL 120 (333)
Q Consensus 45 ~~~v~~Itln~p~-~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~---~~~~~~~~~~~~ 120 (333)
+++|++||||||+ +.|+||.+|+.+|.++|++++.|+++++||||| +++.||+|.|++++... ..+....+...+
T Consensus 14 ~~~va~itlnrp~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 92 (715)
T 1wdk_A 14 ESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVENFKLPDAELIAGNLEA 92 (715)
T ss_dssp GGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred eCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhhcccCCHHHHHHHHHHH
Confidence 6889999999998 899999999999999999999999999999999 56699999999987542 222334455677
Q ss_pred HHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 121 ~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
+.++.+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++|+++|+
T Consensus 93 ~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L~r~vG~~~A~~l~ltG~ 172 (715)
T 1wdk_A 93 NKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGK 172 (715)
T ss_dssp HHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCC
T ss_pred HHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHHHHHhCHHHHHHHHHcCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhc--C----------HH---------HHH-------------
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHN--G----------PI---------AVR------------- 246 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~--~----------~~---------a~~------------- 246 (333)
.++|+||+++||||+|+|+ +++++++.++|++++.. + |. ++.
T Consensus 173 ~~~a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~~g~ 248 (715)
T 1wdk_A 173 ENRAEDALKVSAVDAVVTA----DKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVAGQAGPN 248 (715)
T ss_dssp CEEHHHHHHTTSSSEEECG----GGHHHHHHHHHHHHHTTSSCHHHHHGGGGSCCSCCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHCCCceEEeCh----HHHHHHHHHHHHHHhhccCCcchhcccccCccccCchhHHHHHHHHHHHHHHhcccC
Confidence 9999999999999999985 77999999999999876 4 21 243
Q ss_pred -----HHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHH
Q psy503 247 -----MAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKS 321 (333)
Q Consensus 247 -----~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~a 321 (333)
.+|++++ .+... +++++++.|.+.|..++.++|++|++.+
T Consensus 249 ~~A~~~~k~~v~---~~~~~--------------------------------~~~~~l~~E~~~~~~l~~s~~~~~~~~a 293 (715)
T 1wdk_A 249 YPAPVEAIKTIQ---KAANF--------------------------------GRDKALEVEAAGFAKLAKTSASNCLIGL 293 (715)
T ss_dssp CHHHHHHHHHHH---HHTTC--------------------------------CHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred CchHHHHHHHHH---HHhcC--------------------------------CHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 3445555 44433 7999999999999999999999999999
Q ss_pred HhccCCCC
Q psy503 322 FLGKYKPV 329 (333)
Q Consensus 322 flekr~p~ 329 (333)
|++||+|+
T Consensus 294 F~~kr~~~ 301 (715)
T 1wdk_A 294 FLNDQELK 301 (715)
T ss_dssp HHHHHHHH
T ss_pred HHhhhhhh
Confidence 99998864
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-47 Score=394.26 Aligned_cols=246 Identities=28% Similarity=0.457 Sum_probs=212.7
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHH---HHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ---IRSFVSTL 120 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~---~~~~~~~~ 120 (333)
.+++|++|||||| +.|+||.+|+.+|.++|++++.|+++++||||| +++.||+|.|++++....... ...+...+
T Consensus 14 ~~~~va~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 91 (725)
T 2wtb_A 14 GGDGVAVITLINP-PVNSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQKGNVKEPKAGYISI 91 (725)
T ss_dssp CTTSEEEEEEECT-TTTCCCHHHHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC------------CCSSSHHHH
T ss_pred eeCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhcccchhhhhHHHHHHHH
Confidence 3789999999999 799999999999999999999999999999999 566999999999875422100 01223455
Q ss_pred HHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 121 ~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
+.++.+|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++++++|+
T Consensus 92 ~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rlvG~~~A~~l~ltG~ 171 (725)
T 2wtb_A 92 DIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSK 171 (725)
T ss_dssp HCCCCCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCC
T ss_pred HHHHHHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhcCHHHHHHHHHcCC
Confidence 67777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhc--CHH-HH--------------------------------
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHN--GPI-AV-------------------------------- 245 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~--~~~-a~-------------------------------- 245 (333)
+++|+||+++||||+|+|+ +++++++.++|++++.. ++. ++
T Consensus 172 ~~~a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~g~pA 247 (725)
T 2wtb_A 172 PVKAEEGHSLGLIDAVVPP----AELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAPNMKH 247 (725)
T ss_dssp CEEHHHHHHHTSCSEECCT----TTHHHHHHHHHHHHHTTSSCCCCGGGCCTTSCCHHHHHHHHHHHHHHHHHHCTTCCH
T ss_pred CCCHHHHHHCCccceEcCh----hHHHHHHHHHHHHHHhcCCChhhhhhhccccCccchHHHHHHHHHHHHHHhccCCcH
Confidence 9999999999999999985 67899999999999876 332 22
Q ss_pred -HHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhc
Q psy503 246 -RMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLG 324 (333)
Q Consensus 246 -~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~afle 324 (333)
..+|++++ .+... +++++++.|.+.|..++.+++++|++++|++
T Consensus 248 ~~~~k~~~~---~~~~~--------------------------------~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~ 292 (725)
T 2wtb_A 248 PLMCLDAIE---VGIVS--------------------------------GPRAGLEKEAEVASQVVKLDTTKGLIHVFFS 292 (725)
T ss_dssp HHHHHHHHH---HHHHS--------------------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HhccC--------------------------------CHHHHHHHHHHHHHHHhcchhHHHHHHHhhh
Confidence 46788877 55544 7999999999999999999999999999999
Q ss_pred cCCCCC
Q psy503 325 KYKPVY 330 (333)
Q Consensus 325 kr~p~~ 330 (333)
||+|+.
T Consensus 293 kr~~~~ 298 (725)
T 2wtb_A 293 QRGTAK 298 (725)
T ss_dssp HHGGGC
T ss_pred hhhhcc
Confidence 998764
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-44 Score=350.52 Aligned_cols=213 Identities=24% Similarity=0.272 Sum_probs=191.5
Q ss_pred ccceEEEEeeecCCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHhcC-CCceEEEEEeCCCCccccCCC
Q psy503 33 KLTQIIYHNSPERPGIVELCMNRPQ----------ARNALNATLVEEILTAVEAIRGD-EEVRCVLLRSLVKDVFCAGAD 101 (333)
Q Consensus 33 ~~~~~~~~~~~~~~~v~~Itln~p~----------~~Nalt~~~~~eL~~~l~~~~~d-~~v~vvVl~g~~g~~F~~G~D 101 (333)
.++.+.++. +++|++|+||||+ ++|++|.+|+.+|.++|++++.| +++++|||+|..|++||+|.|
T Consensus 19 ~~~~v~ve~---~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGaD 95 (556)
T 2w3p_A 19 QYKHWKLSF---NGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGAN 95 (556)
T ss_dssp GCSSEEEEE---ETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEEC
T ss_pred cCceEEEEe---eCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCcC
Confidence 344455543 6899999999998 89999999999999999999999 999999999933899999999
Q ss_pred chhhcccCHHHHHHHHHHHHHHHHHH----hcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCC--eEEeccccc-cCcc
Q psy503 102 LKHRLTLNEDQIRSFVSTLRYMTCQL----ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--VRMGLVETK-LAII 174 (333)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~--a~f~~pe~~-~Gl~ 174 (333)
++++.....+....+...++.++..| ..+||||||+|||+|+|||++|+++||+|||+++ ++|++||++ +|++
T Consensus 96 L~el~~~~~~~~~~~~~~~~~l~~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~LGL~ 175 (556)
T 2w3p_A 96 IFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVL 175 (556)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHSSC
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEecccccccCCC
Confidence 99986654433344555677788888 9999999999999999999999999999999999 999999999 9999
Q ss_pred CChhhhhhcc--cccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHh
Q psy503 175 PGAGGTQRLP--RIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSI 252 (333)
Q Consensus 175 p~~g~~~~L~--r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l 252 (333)
|++|++++|+ |++|..++++++++|+.|+|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++. |..+
T Consensus 176 Pg~Ggt~rLp~~RlVG~~rA~eLlLTGr~isA~EAl~lGLVdeVVp~----~eL~~~A~~lA~~LA~~~p~Av~~-K~l~ 250 (556)
T 2w3p_A 176 PGTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKP----NQFDQAIQARALELAAQSDRPAHA-QGVP 250 (556)
T ss_dssp CTTTHHHHHHHTSCCCHHHHHHHTTCSSCEEHHHHHHTTSCSEEECH----HHHHHHHHHHHHHHHTTCCCCTTC-CCCC
T ss_pred CCccHHHHHHhhccCCHHHHHHHHHcCCCCCHHHHHHCCCceEEeCh----hHHHHHHHHHHHHHHcCChHHHhh-hhhh
Confidence 9999999999 99999999999999999999999999999999984 889999999999999999998874 6665
Q ss_pred c
Q psy503 253 D 253 (333)
Q Consensus 253 ~ 253 (333)
+
T Consensus 251 ~ 251 (556)
T 2w3p_A 251 L 251 (556)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-22 Score=204.65 Aligned_cols=170 Identities=18% Similarity=0.219 Sum_probs=142.1
Q ss_pred CCCEEEEEEcCCCCCCC--CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNA--LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY 122 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Na--lt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 122 (333)
+++|++|++|+|.+.|+ ++..+..+|.++|+.++.|+++++|||++. + .|.|+... ..+++
T Consensus 300 ~~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~-s----pGG~~~~~------------~~i~~ 362 (593)
T 3bf0_A 300 GDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVN-S----PGGSVTAS------------EVIRA 362 (593)
T ss_dssp SCEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEE-E----EEECHHHH------------HHHHH
T ss_pred CCCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEec-C----CCCCHHHH------------HHHHH
Confidence 67899999999988888 688899999999999999999999999997 2 46666531 23456
Q ss_pred HHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEecccc------------ccCccCCh-------------
Q psy503 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVET------------KLAIIPGA------------- 177 (333)
Q Consensus 123 l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~------------~~Gl~p~~------------- 177 (333)
.+.++..++||||++|+|.|.|||+.|+++||+|+|++++.|+.+++ ++|+.|..
T Consensus 363 ~i~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~~~~~ 442 (593)
T 3bf0_A 363 ELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITR 442 (593)
T ss_dssp HHHHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCCCTTS
T ss_pred HHHHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCCCEeecceeEEecCchHHHHHhcCceeeeeecccccccCcCC
Confidence 67778889999999999999999999999999999999999999885 58887532
Q ss_pred hhh---------------hhcccccCHHH-----HHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHH
Q psy503 178 GGT---------------QRLPRIVGIPL-----AKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAE 235 (333)
Q Consensus 178 g~~---------------~~L~r~iG~~~-----a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~ 235 (333)
+.+ ..+.+.++..+ +.+++++|+.++|+||+++||||++++ .+++++++.+++.
T Consensus 443 ~~t~~~~~~l~~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~----~~~~~~~a~~~a~ 516 (593)
T 3bf0_A 443 ALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGD----FDDAVAKAAELAK 516 (593)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECC----HHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCcCHHHHHHCCCCcCccC----HHHHHHHHHHHcC
Confidence 111 45566777777 889999999999999999999999997 4777777666543
|
| >3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.9e-20 Score=167.64 Aligned_cols=169 Identities=18% Similarity=0.193 Sum_probs=126.2
Q ss_pred cCCCEEEEEEcCCCCCCCCCHH-------HHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNAT-------LVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSF 116 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~-------~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~ 116 (333)
++++|++|+++.+=..+.-... .+.+|.++|+.+..|+++++|||++. |.|.|+...
T Consensus 1 p~~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~-----s~Gg~~~~~----------- 64 (240)
T 3rst_A 1 PSSKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVN-----SPGGGVYES----------- 64 (240)
T ss_dssp CCCEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEE-----ECCBCHHHH-----------
T ss_pred CCCeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEec-----CCCCCHHHH-----------
Confidence 3578999999976322210111 36899999999999999999999997 467777542
Q ss_pred HHHHHHHHHHHhc-CCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEecc---------------------ccccCcc
Q psy503 117 VSTLRYMTCQLES-IPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLV---------------------ETKLAII 174 (333)
Q Consensus 117 ~~~~~~l~~~l~~-~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~p---------------------e~~~Gl~ 174 (333)
..+.+.+..+.. ++|||||+|+|.|.|||+.|+++||+|++++++.|+.+ +.+.|..
T Consensus 65 -~~i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G~~ 143 (240)
T 3rst_A 65 -AEIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSGAH 143 (240)
T ss_dssp -HHHHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESSTT
T ss_pred -HHHHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEecccc
Confidence 234556666766 89999999999999999999999999999999999999 5556665
Q ss_pred CChhhhh--------------------------hcccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHH
Q psy503 175 PGAGGTQ--------------------------RLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYL 228 (333)
Q Consensus 175 p~~g~~~--------------------------~L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~ 228 (333)
+..+..+ ...|.++...... +++|+.+++++|+++||||++.+. +++.+
T Consensus 144 k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~~~~~-~~~g~~~~a~~A~~~GLVD~i~~~----~~~~~ 218 (240)
T 3rst_A 144 ADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKK-IADGRVYDGRQAKKLNLVDELGFY----DDTIT 218 (240)
T ss_dssp TTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHH-HCSSCEEEHHHHHHTTSSSEECCH----HHHHH
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCH----HHHHH
Confidence 5554221 1224455554444 788999999999999999999983 65665
Q ss_pred HHHHHH
Q psy503 229 ASLRIA 234 (333)
Q Consensus 229 ~a~~~a 234 (333)
.+.+++
T Consensus 219 ~~~~~~ 224 (240)
T 3rst_A 219 AMKKDH 224 (240)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 555443
|
| >3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=162.31 Aligned_cols=148 Identities=14% Similarity=0.235 Sum_probs=124.2
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
.+.|++|++++ ++++++...|.+.|+.++.+ ++++|||+.. |.|.|+.. ...++
T Consensus 7 ~~~V~vI~i~g-----~I~~~~~~~l~~~l~~a~~~-~~~~Ivl~in-----spGG~v~~---------------~~~i~ 60 (230)
T 3viv_A 7 KNIVYVAQIKG-----QITSYTYDQFDRYITIAEQD-NAEAIIIELD-----TPGGRADA---------------MMNIV 60 (230)
T ss_dssp CCEEEEEEEES-----CBCHHHHHHHHHHHHHHHHT-TCSEEEEEEE-----BSCEEHHH---------------HHHHH
T ss_pred CCeEEEEEEeC-----EECHHHHHHHHHHHHHHhcC-CCCEEEEEEe-----CCCcCHHH---------------HHHHH
Confidence 56799999994 69999999999999999864 6899999986 55665532 24566
Q ss_pred HHHhcCCCcEEEEe---chhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhh---------------hhcccc
Q psy503 125 CQLESIPVPVLAVL---DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGT---------------QRLPRI 186 (333)
Q Consensus 125 ~~l~~~~kP~Iaav---~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~---------------~~L~r~ 186 (333)
..|..++||||+.| +|.|.|+|+.|+++||+++++++++|+.++...+. |..|.. ..+++.
T Consensus 61 ~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~~~~-~~~G~~~~~~~k~~~~~~~~~~~la~~ 139 (230)
T 3viv_A 61 QRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGY-SQNGSIIEAPPAITNYFIAYIKSLAQE 139 (230)
T ss_dssp HHHHTCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEEEEE-CTTSCEEECCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccceecC-CCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 77788999999999 99999999999999999999999999999987532 444432 136666
Q ss_pred cCH--HHHHHHHHcCCCCCHHHHHHcCCcceecCC
Q psy503 187 VGI--PLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 187 iG~--~~a~~llltG~~isa~eAl~~Glv~~vv~~ 219 (333)
.|. .++.+++..+..++|+||+++||||+|+++
T Consensus 140 ~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~ 174 (230)
T 3viv_A 140 SGRNATIAEEFITKDLSLTPEEALKYGVIEVVARD 174 (230)
T ss_dssp TTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSS
T ss_pred hCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCC
Confidence 774 799999999999999999999999999986
|
| >2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-15 Score=141.03 Aligned_cols=157 Identities=16% Similarity=0.231 Sum_probs=124.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l 127 (333)
|.++-.+..-..|+++..+...+.++++.+.++ .+.+|+|++. | |.|+++... . +..+..++..+
T Consensus 120 V~v~a~d~~~~ggslg~~~~~Ki~r~~e~A~~~-~~PvI~l~~s-G-----Garlqeg~~-------~-l~~~~~i~~al 184 (304)
T 2f9y_B 120 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSAS-G-----GARMQEALM-------S-LMQMAKTSAAL 184 (304)
T ss_dssp CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEEE-S-----SBCGGGTHH-------H-HHHHHHHHHHH
T ss_pred EEEEEEcCccccCCCCHHHHHHHHHHHHHHHhC-CCCEEEEECC-C-----CcCHHHHHH-------H-HHHHHHHHHHH
Confidence 555666655578999999999999999999988 8999999997 4 777765321 1 13345555555
Q ss_pred h---cCCCcEEEEechhhhHhh-HHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 128 E---SIPVPVLAVLDGSAYGGG-LEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 128 ~---~~~kP~Iaav~G~a~GgG-~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
. ..++|+|++|+|+|.||| +.++++||++|+.++++|++. +...+.+.+|.. ++++..+
T Consensus 185 ~~~~~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~A~i~v~-----------Gp~~i~~~ig~~------l~~~~~~ 247 (304)
T 2f9y_B 185 AKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFA-----------GPRVIEQTVREK------LPPGFQR 247 (304)
T ss_dssp HHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESS-----------CHHHHHHHHTSC------CCTTTTB
T ss_pred HHHhcCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCCcEEEee-----------cHHHHHHHhCcc------CCcccCC
Confidence 4 459999999999999999 677999999999999999976 234455556542 4688999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhc
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHN 240 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~ 240 (333)
|++++++|+||.|+++ +++.+.+.+++..+...
T Consensus 248 Ae~~~~~Glvd~Vv~~----~el~~~l~~ll~~l~~~ 280 (304)
T 2f9y_B 248 SEFLIEKGAIDMIVRR----PEMRLKLASILAKLMNL 280 (304)
T ss_dssp HHHHGGGTCCSEECCH----HHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCccEEeCc----HHHHHHHHHHHHHhhcC
Confidence 9999999999999985 77888888888888754
|
| >1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=129.79 Aligned_cols=147 Identities=12% Similarity=0.155 Sum_probs=109.7
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|..| +.+ ++.++..++.+.|..++.++..+.|+|.-. |.|.++.. ...++
T Consensus 44 ~~rii~l--~g~-----I~~~~a~~i~~~L~~l~~~~~~k~I~l~In-----SPGG~v~a---------------g~~I~ 96 (218)
T 1y7o_A 44 KDRIIML--TGP-----VEDNMANSVIAQLLFLDAQDSTKDIYLYVN-----TPGGSVSA---------------GLAIV 96 (218)
T ss_dssp HTTEEEE--ESC-----BCHHHHHHHHHHHHHHHHHCTTSCEEEEEE-----ECCBCHHH---------------HHHHH
T ss_pred cCCEEEE--eCE-----ECHHHHHHHHHHHHHHHhcCCCCCEEEEEE-----CcCCCHHH---------------HHHHH
Confidence 4666544 433 889999999999999988776676666532 22322211 22355
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCE--EEEeCCeEEeccccccCccCChhh------------------hhhcc
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDI--RVAASNVRMGLVETKLAIIPGAGG------------------TQRLP 184 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~--rias~~a~f~~pe~~~Gl~p~~g~------------------~~~L~ 184 (333)
..+..+++||++.++|.|.++|+.|+++||. |++.+++.|++++.. |..+..|. ...+.
T Consensus 97 ~~i~~~~~pV~t~v~G~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~-~g~~~~G~~~di~~~~~~i~~~~~~~~~~~a 175 (218)
T 1y7o_A 97 DTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPM-GGTGGGTQQTDMAIAPEHLLKTRNTLEKILA 175 (218)
T ss_dssp HHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC---------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEEccEeHHHHHHHHHcCCcCcEEEcCCcEEEEeccc-ccccCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667789999999999999999999999999 999999999999987 43332332 23456
Q ss_pred cccCH--HHHHHHHHcCCCCCHHHHHHcCCcceecCC
Q psy503 185 RIVGI--PLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 185 r~iG~--~~a~~llltG~~isa~eAl~~Glv~~vv~~ 219 (333)
+..|. .++.+++..|+.++|+||+++||||+|+++
T Consensus 176 ~~~G~~~~~i~~~~~~~~~~ta~EA~e~GLVD~v~~~ 212 (218)
T 1y7o_A 176 ENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMAN 212 (218)
T ss_dssp HHHTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECCC
T ss_pred HHhCCCHHHHHHHHhCCCEEcHHHHHHCCCCcEEcCc
Confidence 66664 588899999999999999999999999986
|
| >2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.9e-14 Score=131.19 Aligned_cols=181 Identities=12% Similarity=0.095 Sum_probs=127.2
Q ss_pred CCCEEEEEEcCCC---------CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHH
Q psy503 45 RPGIVELCMNRPQ---------ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRS 115 (333)
Q Consensus 45 ~~~v~~Itln~p~---------~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~ 115 (333)
++.-..|.-|++. ..++++++......+.++.+++.. +-+|.|.-. ++++. |.+- +...
T Consensus 115 ~G~~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~~-~PlI~lvdt-~Ga~~-g~~a---------e~~g 182 (327)
T 2f9i_A 115 NGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFN-RPIFTFIDT-KGAYP-GKAA---------EERG 182 (327)
T ss_dssp TTEEEEEEEECCCSSHHHHHHTGGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEE-SCSCC-CHHH---------HHTT
T ss_pred CCEEEEEEEEcCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeC-CCCCc-chhh---------hhhh
Confidence 4555555566654 347899999999999999988765 445555554 33222 2211 1112
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHH
Q psy503 116 FVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKEL 195 (333)
Q Consensus 116 ~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~l 195 (333)
....+..++..+..+++|+|++|+|.|.|||+.++++||++||+++++|++ +.|.+++..++.+..+...+.++
T Consensus 183 ~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~D~via~~~A~~~v------~~peg~a~il~~~~~~a~~A~e~ 256 (327)
T 2f9i_A 183 QSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSV------ISPEGAAALLWKDSNLAKIAAET 256 (327)
T ss_dssp HHHHHHHHHHHHHTCSSCEEEEEEEEEBHHHHHTTCCCSEEEEETTCBCBS------SCHHHHHHHHSSCGGGHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCEEEEEECCcChHHHHHHHCCCEEEEcCCceEee------cCchHHHHHHHHHhcchHHHHHH
Confidence 334566777889999999999999999999999999999999999999885 34555555555555555677766
Q ss_pred HHcCCCCCHHHHHHcCCcceecCCC-----CChh----HHHHHHHHHHHHHhhcCHHHHHH
Q psy503 196 IYTGRLVDSTEAKSIGLVNTLTPQN-----PNQN----AAYLASLRIAEDIAHNGPIAVRM 247 (333)
Q Consensus 196 lltG~~isa~eAl~~Glv~~vv~~~-----~~~~----~l~~~a~~~a~~ia~~~~~a~~~ 247 (333)
+.++|++|+++|+||+|++.. .+++ ++.+...+..+.+...++..+..
T Consensus 257 ----~~itA~~a~~~GlVd~VV~ep~gga~~~~~~~~~~lr~~l~~~L~~l~~~~~~~l~~ 313 (327)
T 2f9i_A 257 ----MKITAHDIKQLGIIDDVISEPLGGAHKDIEQQALAIKSAFVAQLDSLESLSRDEIAN 313 (327)
T ss_dssp ----HTCBHHHHHHTTSSSEEECCCTTCGGGCHHHHHHHHHHHHHHHHHTTTTCCHHHHHH
T ss_pred ----cCCCHHHHHHcCCceEEecCCCCCCccCHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 789999999999999999841 1123 44444445556666677665544
|
| >2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=99.53 E-value=7.3e-14 Score=131.87 Aligned_cols=167 Identities=13% Similarity=0.095 Sum_probs=123.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 59 ~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
.++++++......++++.+++.. +-+|.|.-. ++++. |... +.......+..++..+..+++|+|++|
T Consensus 152 ~G~~~~~~~~Ka~r~~~~A~~~~-lPlI~lvDt-~Ga~~-g~~a---------E~~g~~~~~a~~l~al~~~~vPvIavV 219 (339)
T 2f9y_A 152 FGMPAPEGYRKALRLMQMAERFK-MPIITFIDT-PGAYP-GVGA---------EERGQSEAIARNLREMSRLGVPVVCTV 219 (339)
T ss_dssp GGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEE-SCSCC-SHHH---------HHTTHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeC-CCCcc-chHH---------HHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 47899999999999999888765 445555555 33222 2211 111234556677888999999999999
Q ss_pred chhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q psy503 139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218 (333)
Q Consensus 139 ~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~ 218 (333)
+|.|.|||+.++++||++||.++++|++ +.|.++++.++.+..+...+.++ ..++|++|+++|+||+|++
T Consensus 220 ~G~a~GGGa~~~~~~D~via~p~A~~~v------~~Peg~asil~~~~~~~~~Aae~----~~itA~~a~~~GlVd~VV~ 289 (339)
T 2f9y_A 220 IGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDSIIP 289 (339)
T ss_dssp EEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSCCCC
T ss_pred eCCcCcHHHHHHhccCeeeecCCCEEEe------eccchHHHHHHHhhccHHHHHHH----cCCCHHHHHHcCCeeEEec
Confidence 9999999999999999999999999996 45777777777777777888877 6799999999999999999
Q ss_pred CC-----CChh----HHHHHHHHHHHHHhhcCHHHHHH
Q psy503 219 QN-----PNQN----AAYLASLRIAEDIAHNGPIAVRM 247 (333)
Q Consensus 219 ~~-----~~~~----~l~~~a~~~a~~ia~~~~~a~~~ 247 (333)
.. .+++ ++.+...+..+.+...++..+..
T Consensus 290 ep~gga~~~~~~~~~~lr~~l~~~L~~l~~~~~~~l~~ 327 (339)
T 2f9y_A 290 EPLGGAHRNPEAMAASLKAQLLADLADLDVLSTEDLKN 327 (339)
T ss_dssp CSTTCGGGCHHHHHHHHHHHHHHHTTTTTTSCHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 41 1123 34444444455555666665543
|
| >2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A | Back alignment and structure |
|---|
Probab=99.12 E-value=3.9e-10 Score=99.61 Aligned_cols=146 Identities=13% Similarity=0.102 Sum_probs=100.4
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE--EeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHh
Q psy503 51 LCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL--RSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLE 128 (333)
Q Consensus 51 Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl--~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~ 128 (333)
|.++.+ ++..+...+.+.|..++.++..+.|+| .+.||..|+ ...++..|.
T Consensus 30 i~l~G~-----I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPGG~v~a----------------------~~~I~~~i~ 82 (208)
T 2cby_A 30 IFLGSE-----VNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISA----------------------GMAIYDTMV 82 (208)
T ss_dssp EEECSC-----BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHH----------------------HHHHHHHHH
T ss_pred EEEcCE-----ECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCCCCHHH----------------------HHHHHHHHH
Confidence 555544 788999999999999987665565544 444333221 234556677
Q ss_pred cCCCcEEEEechhhhHhhHHHHHhCCE--EEEeCCeEEeccccccCccCChhhh------------------hhcccc--
Q psy503 129 SIPVPVLAVLDGSAYGGGLEMALACDI--RVAASNVRMGLVETKLAIIPGAGGT------------------QRLPRI-- 186 (333)
Q Consensus 129 ~~~kP~Iaav~G~a~GgG~~Lal~cD~--rias~~a~f~~pe~~~Gl~p~~g~~------------------~~L~r~-- 186 (333)
.+++||++.+.|.|.++|..++++||. |++.+++.+++....-|. .|.. ..+.+.
T Consensus 83 ~~~~pV~~~v~g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~---~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g 159 (208)
T 2cby_A 83 LAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGV---TGSAADIAIQAEQFAVIKKEMFRLNAEFTG 159 (208)
T ss_dssp HCSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC-------------CHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcCCCEEEEECcEeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 788999999999999999999999998 999999999887654321 1110 112222
Q ss_pred cCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHH
Q psy503 187 VGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLA 229 (333)
Q Consensus 187 iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~ 229 (333)
.......+++..|..++++||+++||||+|.++ .+++++.
T Consensus 160 ~~~~~i~~~~~~~~~~ta~eA~e~GLvD~i~~~---~~~ll~~ 199 (208)
T 2cby_A 160 QPIERIEADSDRDRWFTAAEALEYGFVDHIITR---AHVNGEA 199 (208)
T ss_dssp CCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSC---C------
T ss_pred cCHHHHHHHHhCCcEEcHHHHHHcCCCcEecCc---hHHHHHH
Confidence 234556678889999999999999999999986 3445443
|
| >3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A | Back alignment and structure |
|---|
Probab=98.74 E-value=9.8e-08 Score=83.73 Aligned_cols=133 Identities=15% Similarity=0.137 Sum_probs=95.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEE--EeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec
Q psy503 62 LNATLVEEILTAVEAIRGDEEVRCVLL--RSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d~~v~vvVl--~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~ 139 (333)
+++.+...+...|..++.++..+.|+| .+-|| ++ .....++..+..+++||++.+.
T Consensus 36 I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG-------~v---------------~~~~~I~~~i~~~~~~V~t~~~ 93 (203)
T 3qwd_A 36 IDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGG-------SV---------------TAGFAIYDTIQHIKPDVQTICI 93 (203)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCB-------CH---------------HHHHHHHHHHHHSSSCEEEEEE
T ss_pred ECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCC-------CH---------------HHHHHHHHHHHHhcCCcEEEEe
Confidence 889999999999999987655554443 44422 21 1123455566677899999999
Q ss_pred hhhhHhhHHHHHhCC--EEEEeCCeEEeccccccCccCChhhhh------------------hcccc--cCHHHHHHHHH
Q psy503 140 GSAYGGGLEMALACD--IRVAASNVRMGLVETKLAIIPGAGGTQ------------------RLPRI--VGIPLAKELIY 197 (333)
Q Consensus 140 G~a~GgG~~Lal~cD--~rias~~a~f~~pe~~~Gl~p~~g~~~------------------~L~r~--iG~~~a~~lll 197 (333)
|.|.++|..|+++|| .|++.+++.|.+....-|. .|... .+.+. ........++-
T Consensus 94 G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~---~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~~~~~ 170 (203)
T 3qwd_A 94 GMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGA---QGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTD 170 (203)
T ss_dssp EEEETHHHHHHHTSCTTCEEECTTCEEECCCCSSST---TTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHHHHHT
T ss_pred eeehhHHHHHHHcCCcCeEEEcCCceEEEecccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Confidence 999999999999999 6999999999876554321 11100 01111 23556666666
Q ss_pred cCCCCCHHHHHHcCCcceecCC
Q psy503 198 TGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 198 tG~~isa~eAl~~Glv~~vv~~ 219 (333)
....++|+||+++||||+|+++
T Consensus 171 ~d~~lta~EA~e~GliD~I~~~ 192 (203)
T 3qwd_A 171 RDNFLTAEEAKEYGLIDEVMVP 192 (203)
T ss_dssp SCCCEEHHHHHHHTSCSEECCC
T ss_pred cCceecHHHHHHcCCcCEecCC
Confidence 6778899999999999999986
|
| >2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.2e-07 Score=84.02 Aligned_cols=141 Identities=9% Similarity=0.043 Sum_probs=95.3
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE--EeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHh
Q psy503 51 LCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL--RSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLE 128 (333)
Q Consensus 51 Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl--~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~ 128 (333)
|.++.+ ++..+...+...|..++.++. +.|+| .+-||. + .....++..|.
T Consensus 42 I~l~G~-----I~~~~a~~i~~~L~~l~~~~~-k~I~l~INSPGGs-------v---------------~a~~~I~~~i~ 93 (215)
T 2f6i_A 42 IYLTDE-----INKKTADELISQLLYLDNINH-NDIKIYINSPGGS-------I---------------NEGLAILDIFN 93 (215)
T ss_dssp EEECSC-----BCHHHHHHHHHHHHHHHHHCC-SCEEEEEEECCBC-------H---------------HHHHHHHHHHH
T ss_pred EEEccE-----ECHHHHHHHHHHHHHHHhCCC-CcEEEEEECCCCC-------H---------------HHHHHHHHHHH
Confidence 555544 788889999999998875544 54444 444222 1 11234555667
Q ss_pred cCCCcEEEEechhhhHhhHHHHHhCCE--EEEeCCeEEeccccccCccC---Chhh----hh--------hcc--cccCH
Q psy503 129 SIPVPVLAVLDGSAYGGGLEMALACDI--RVAASNVRMGLVETKLAIIP---GAGG----TQ--------RLP--RIVGI 189 (333)
Q Consensus 129 ~~~kP~Iaav~G~a~GgG~~Lal~cD~--rias~~a~f~~pe~~~Gl~p---~~g~----~~--------~L~--r~iG~ 189 (333)
.+++||++.+.|.|..+|..++++||. |++.+++.+++.....|... +... .. .+. +-...
T Consensus 94 ~~~~pV~t~v~g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~ 173 (215)
T 2f6i_A 94 YIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTV 173 (215)
T ss_dssp HSSSCEEEEEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred hcCCCEEEEEeeEhHhHHHHHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCH
Confidence 778999999999999999999999999 99999999987665433210 0000 00 001 11234
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCC
Q psy503 190 PLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 190 ~~a~~llltG~~isa~eAl~~Glv~~vv~~ 219 (333)
....+++-.+..++++||+++||||+|.++
T Consensus 174 e~i~~~~~~~~~lta~eA~e~GLiD~I~~~ 203 (215)
T 2f6i_A 174 ETIEKDSDRDYYMNALEAKQYGIIDEVIET 203 (215)
T ss_dssp HHHHHHHHTTCEECHHHHHHHTSCSEECCC
T ss_pred HHHHHHHhCCeecCHHHHHHCCCCCEecCC
Confidence 555566655667799999999999999986
|
| >1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A | Back alignment and structure |
|---|
Probab=98.72 E-value=2.7e-08 Score=86.64 Aligned_cols=138 Identities=13% Similarity=0.089 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechh
Q psy503 62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGS 141 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~ 141 (333)
++..+...+.+.|..++.++..+.|+|.=..+ |+++ .....++..|..+++||++.+.|.
T Consensus 35 I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSP-----GG~v---------------~a~~~I~~~i~~~~~pV~~~v~g~ 94 (193)
T 1yg6_A 35 VEDHMANLIVAQMLFLEAENPEKDIYLYINSP-----GGVI---------------TAGMSIYDTMQFIKPDVSTICMGQ 94 (193)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEEC-----CBCH---------------HHHHHHHHHHHHSSSCEEEEEEEE
T ss_pred EcHHHHHHHHHHHHHHHhcCCCCCEEEEEECc-----CCCH---------------HHHHHHHHHHHhcCCCEEEEEeee
Confidence 78899999999999887665566555543311 2221 112345556667789999999999
Q ss_pred hhHhhHHHHHhCCE--EEEeCCeEEeccccccCccCC---hhh------------hhhcccc--cCHHHHHHHHHcCCCC
Q psy503 142 AYGGGLEMALACDI--RVAASNVRMGLVETKLAIIPG---AGG------------TQRLPRI--VGIPLAKELIYTGRLV 202 (333)
Q Consensus 142 a~GgG~~Lal~cD~--rias~~a~f~~pe~~~Gl~p~---~g~------------~~~L~r~--iG~~~a~~llltG~~i 202 (333)
|..+|..++++||. |++.+++.++......|.... ... ...+.+. .......+++-.+..+
T Consensus 95 AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~~~ 174 (193)
T 1yg6_A 95 AASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFL 174 (193)
T ss_dssp EETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCEEE
T ss_pred HHHHHHHHHHCCCcCcEEEecCcEEEEEeccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCeEE
Confidence 99999999999999 999999998876544332100 000 0011111 2344555555556677
Q ss_pred CHHHHHHcCCcceecCC
Q psy503 203 DSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 203 sa~eAl~~Glv~~vv~~ 219 (333)
+++||+++||||++.++
T Consensus 175 ta~eA~~~GliD~i~~~ 191 (193)
T 1yg6_A 175 SAPEAVEYGLVDSILTH 191 (193)
T ss_dssp EHHHHHHHTSSSEECCC
T ss_pred cHHHHHHcCCCCEecCC
Confidence 99999999999999875
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=98.71 E-value=8.3e-07 Score=87.78 Aligned_cols=214 Identities=19% Similarity=0.185 Sum_probs=154.6
Q ss_pred cceEEEEeeecCCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEEeCCCCc-ccc
Q psy503 34 LTQIIYHNSPERPGIVELCMNRPQAR-------------NALNATLVEEILTAVEAIR-GDEEVRCVLLRSLVKDV-FCA 98 (333)
Q Consensus 34 ~~~~~~~~~~~~~~v~~Itln~p~~~-------------Nalt~~~~~eL~~~l~~~~-~d~~v~vvVl~g~~g~~-F~~ 98 (333)
+......+ +...+++.++...|... +.+...|..||.++|-.+. ++.++...++... |.. --.
T Consensus 265 y~~~~~ai-~ra~r~a~~~~~g~~~a~~~~ld~i~aa~~~~~~l~~~~el~~All~l~~ne~~~~~~~~~t~-g~~~~~~ 342 (556)
T 2w3p_A 265 YKTLDVTI-DRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTE-GDARHLL 342 (556)
T ss_dssp ETTEEEEE-ETTTTEEEEEEECCSSCCCCSHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEE-SCHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHhcCCCCCchhhHHHHHHhhhcchhhhhhhHHHHHHHhhhhccHHHhHhhhhcc-CCHHHHh
Confidence 34444443 35678999999987532 3344568889977766554 6788888888887 432 111
Q ss_pred CCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe-chhhhHhh-HHHHHhCCEEEEeC-------CeEEecccc
Q psy503 99 GADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL-DGSAYGGG-LEMALACDIRVAAS-------NVRMGLVET 169 (333)
Q Consensus 99 G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav-~G~a~GgG-~~Lal~cD~rias~-------~a~f~~pe~ 169 (333)
..|---..+.+..-+.+....+++.+.++.-.+.-+++.| .|.|+.|- ++|+++||..++-+ ...+.+.+.
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (556)
T 2w3p_A 343 AADASLMQHKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEV 422 (556)
T ss_dssp HHHHHHHHTTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEECTTCCEEGGGHHHHHTSSEEEECCCTTCTTTSCCEECCGG
T ss_pred hhHHHHHhccchHHHHHHHHHHHHHHHHhcccchhheeeecCCcchHHHHHHHHHHhhhhhhhcCCCCCCCCceeEeecc
Confidence 1111111122233355666778888999999999999999 78997665 69999999999832 378999999
Q ss_pred ccCccCChhhhhhccccc-CHHHHH--HHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHH
Q psy503 170 KLAIIPGAGGTQRLPRIV-GIPLAK--ELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVR 246 (333)
Q Consensus 170 ~~Gl~p~~g~~~~L~r~i-G~~~a~--~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~ 246 (333)
++|..|-.-+..+|.++. |..... --...|+++++++|.++|||+...++ -+..++..-..++-+..||.++.
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 498 (556)
T 2w3p_A 423 NFGLYPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDD----IDWADEIRIALEERAAMSPDALT 498 (556)
T ss_dssp GGTTSCCTTSSCHHHHHTTTCHHHHHHHHTTTTSCBCHHHHHHTTSSSBCCCT----TTHHHHHHHHHHHHHHSCHHHHH
T ss_pred ccCcccCCCchhHHHHHhcCCcchHHHHHHHhCCCCCHHHHHhcCCeecCccc----CChHHHHHHHHHHHhccCcchhc
Confidence 999999766666776554 433222 22345999999999999999988775 44778888888999999999999
Q ss_pred HHHHHhc
Q psy503 247 MAKRSID 253 (333)
Q Consensus 247 ~~K~~l~ 253 (333)
.+...++
T Consensus 499 ~~~~~~~ 505 (556)
T 2w3p_A 499 GLEANLR 505 (556)
T ss_dssp HHHHHHS
T ss_pred cchhhcc
Confidence 9999998
|
| >1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=2.3e-07 Score=84.88 Aligned_cols=145 Identities=12% Similarity=0.152 Sum_probs=96.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhc
Q psy503 50 ELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLES 129 (333)
Q Consensus 50 ~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~ 129 (333)
+|.|+.+ ++.++...+...|..++.++..+.|+|.=..+ |+++ .....++..|..
T Consensus 84 II~l~G~-----I~d~~a~~iiaqL~~l~~ed~~k~I~L~INSP-----GGsV---------------~ag~aIyd~I~~ 138 (277)
T 1tg6_A 84 IVCVMGP-----IDDSVASLVIAQLLFLQSESNKKPIHMYINSP-----GGVV---------------TAGLAIYDTMQY 138 (277)
T ss_dssp EEEEESS-----BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEEC-----CBCH---------------HHHHHHHHHHHH
T ss_pred EEEEcCE-----ECHHHHHHHHHHHHHHHhcCCCCCEEEEEECC-----CCCH---------------HHHHHHHHHHHh
Confidence 4555554 88889999999999876544446555533211 2211 112334555667
Q ss_pred CCCcEEEEechhhhHhhHHHHHhCCE--EEEeCCeEEeccccccCccCChhhhh---------------hcccc--cCHH
Q psy503 130 IPVPVLAVLDGSAYGGGLEMALACDI--RVAASNVRMGLVETKLAIIPGAGGTQ---------------RLPRI--VGIP 190 (333)
Q Consensus 130 ~~kP~Iaav~G~a~GgG~~Lal~cD~--rias~~a~f~~pe~~~Gl~p~~g~~~---------------~L~r~--iG~~ 190 (333)
+++||++.+.|.|..+|..|+++||. |++.+++.++......|......-.. .+.+. ....
T Consensus 139 ~k~pV~t~v~G~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~~G~a~Di~~~a~ei~~~~~~~~~i~a~~tG~~~e 218 (277)
T 1tg6_A 139 ILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQ 218 (277)
T ss_dssp SCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred cCCCEEEEEccEeHHHHHHHHHCCCcCCEEEecCCEEEEecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 78999999999999999999999999 99999999887655433211000000 01111 2344
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCC
Q psy503 191 LAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 191 ~a~~llltG~~isa~eAl~~Glv~~vv~~ 219 (333)
...+++-.+..++++||+++||||+|...
T Consensus 219 ~i~~~~drd~~lta~EAle~GLID~I~~~ 247 (277)
T 1tg6_A 219 VIESAMERDRYMSPMEAQEFGILDKVLVH 247 (277)
T ss_dssp HHHHHHSSCEEECHHHHHHHTSCSEECSS
T ss_pred HHHHHHhcCcccCHHHHHHCCCCCEecCc
Confidence 55566555677899999999999999986
|
| >3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=8.4e-08 Score=84.01 Aligned_cols=135 Identities=11% Similarity=0.072 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEE--EeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec
Q psy503 62 LNATLVEEILTAVEAIRGDEEVRCVLL--RSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d~~v~vvVl--~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~ 139 (333)
+++.+...+...|..++.++..+.|+| .+-|| ++ .....++..+..+++|+++.+.
T Consensus 39 I~~~~a~~i~~~L~~l~~~~~~~~I~l~INSpGG-------~v---------------~~~~~I~~~i~~~~~~v~t~~~ 96 (201)
T 3p2l_A 39 VNDHSANLVIAQLLFLESEDPDKDIYFYINSPGG-------MV---------------TAGMGVYDTMQFIKPDVSTICI 96 (201)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCB-------CH---------------HHHHHHHHHHHHSSSCEEEEEE
T ss_pred ECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-------CH---------------HHHHHHHHHHHHhCCCeEEEEc
Confidence 888999999999998886654554444 44422 21 1123455666777899999999
Q ss_pred hhhhHhhHHHHHhCCE--EEEeCCeEEeccccccCccCChhh--------h--------hhcccc--cCHHHHHHHHHcC
Q psy503 140 GSAYGGGLEMALACDI--RVAASNVRMGLVETKLAIIPGAGG--------T--------QRLPRI--VGIPLAKELIYTG 199 (333)
Q Consensus 140 G~a~GgG~~Lal~cD~--rias~~a~f~~pe~~~Gl~p~~g~--------~--------~~L~r~--iG~~~a~~llltG 199 (333)
|.|.++|..+++++|. |++.+++.+.+....-|. -+... . ..+.+. .......+++-..
T Consensus 97 G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~~-~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e~i~~~~~~~ 175 (201)
T 3p2l_A 97 GLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGF-RGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRD 175 (201)
T ss_dssp EEEETHHHHHHHTSSTTCEEECTTCEEEECCCEEEE-EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSC
T ss_pred CEehhHHHHHHHcCccCCEEEcCCCeEEEecccccc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhhcC
Confidence 9999999999999998 999999998776654221 11000 0 001111 1344555555555
Q ss_pred CCCCHHHHHHcCCcceecCC
Q psy503 200 RLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 200 ~~isa~eAl~~Glv~~vv~~ 219 (333)
..++|+||+++||||+|+++
T Consensus 176 ~~lta~EA~e~GliD~I~~~ 195 (201)
T 3p2l_A 176 NFMMADEAKAYGLIDHVIES 195 (201)
T ss_dssp EEEEHHHHHHHTSCSEECCC
T ss_pred eeecHHHHHHcCCccEecCC
Confidence 66799999999999999987
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=98.20 E-value=5.2e-06 Score=83.44 Aligned_cols=168 Identities=15% Similarity=0.168 Sum_probs=105.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l 127 (333)
|.++-.+..-..-++.+...+.+.++++.+.+.. +-+|.|.-+ + |..+.+-...-.+ ...+ ..+..-...+
T Consensus 107 v~v~a~D~t~~gGs~g~~~~~Ki~r~~e~A~~~~-lPvI~l~dS-g-----GArlqe~~~~l~~-~~~~-g~i~~~~~~l 177 (587)
T 1pix_A 107 CVVVASDNKKLAGAWVPGQAECLLRASDTAKTLH-VPLVYVLNC-S-----GVKFDEQEKVYPN-RRGG-GTPFFRNAEL 177 (587)
T ss_dssp EEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHT-CCEEEEECC-C-----EECGGGHHHHSSS-TTST-THHHHHHHHH
T ss_pred EEEEEECCccccCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeC-C-----CCCccccchhccc-cccH-HHHHHHHHHH
Confidence 4445555444567888899999999999887653 456666554 3 4444331110000 0000 1122234455
Q ss_pred hcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCC-eEEeccccccCccCChhhhhhcccccCHHHHHHHH-HcCCCCCHH
Q psy503 128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELI-YTGRLVDST 205 (333)
Q Consensus 128 ~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~-a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~ll-ltG~~isa~ 205 (333)
....+|+|++|.|+|.|||... ..||++|+.++ +.+++... ..--...-.-.++..+|.+++ .+|+.++++
T Consensus 178 s~~giP~Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP------~vi~~~~~~~~~d~~~A~el~~~tge~v~~e 250 (587)
T 1pix_A 178 NQLGIPVIVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVGGA------GIMGGMNPKGHVDLEYANEIADMVDRTGKTE 250 (587)
T ss_dssp HHTTCCEEEEECSEEETHHHHH-HHSSSEEEEETTCEEESCCC------TTCCSCCSSSSCCHHHHHHHHHHHHTTCCCC
T ss_pred hCCCCCEEEEEecCCcHHHHHH-HhcCceEEecCCcEEEecCH------HHHhhhccccccchhHHHHHHHHhCCccChh
Confidence 6778999999999999999999 99999988774 88775221 110000011237899999999 999988766
Q ss_pred H-----H--HHcCCcceecCCCCChhHHHHHHHHHH
Q psy503 206 E-----A--KSIGLVNTLTPQNPNQNAAYLASLRIA 234 (333)
Q Consensus 206 e-----A--l~~Glv~~vv~~~~~~~~l~~~a~~~a 234 (333)
+ . .+.|++|.++++ .++..+.+.++.
T Consensus 251 ~lgga~~h~~~~GvvD~vv~~---e~~a~~~~r~~l 283 (587)
T 1pix_A 251 PPGAVDIHYTETGFMREVYAS---EEGVLEGIKKYV 283 (587)
T ss_dssp CSSBHHHHTTTSCCSCEEESS---HHHHHHHHHHHH
T ss_pred hcccHHHHHhhcCceeEecCC---HHHHHHHHHHHH
Confidence 5 2 369999999997 333444444443
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.2e-05 Score=81.38 Aligned_cols=87 Identities=11% Similarity=0.079 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEEeCCCCccccC-CCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhH
Q psy503 66 LVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAG-ADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYG 144 (333)
Q Consensus 66 ~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G-~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~G 144 (333)
...++.+.|+.+..|+.++.|+|.-. |.| .++.. ...+++.+..+....|||||.+++ +..
T Consensus 71 ~~~~i~~~L~~a~~d~~ik~I~L~in-----spGgG~v~~------------~~~I~~~i~~~k~~gkpvva~~~~-aas 132 (593)
T 3bf0_A 71 SLFDIVNTIRQAKDDRNITGIVMDLK-----NFAGGDQPS------------MQYIGKALKEFRDSGKPVYAVGEN-YSQ 132 (593)
T ss_dssp EHHHHHHHHHHHHHCTTCCCEEEECT-----EEEECCHHH------------HHHHHHHHHHHHHTTCCEEEEESC-EEH
T ss_pred CHHHHHHHHHHHHhCCCceEEEEEeC-----CCCCCcHHH------------HHHHHHHHHHHHhcCCeEEEEEcc-chh
Confidence 46778899999999999999999876 222 33322 134556666666667999999876 567
Q ss_pred hhHHHHHhCCEEEEeCCeEEeccccc
Q psy503 145 GGLEMALACDIRVAASNVRMGLVETK 170 (333)
Q Consensus 145 gG~~Lal~cD~rias~~a~f~~pe~~ 170 (333)
+|..|+++||.+++.+.+.++...+.
T Consensus 133 ~~y~lAsaad~i~~~P~~~vg~~g~~ 158 (593)
T 3bf0_A 133 GQYYLASFANKIWLSPQGVVDLHGFA 158 (593)
T ss_dssp HHHHHHTTSSEEEECTTCCEECCCCB
T ss_pred HHHHHHHhCCEEEECCCceEEEeccc
Confidence 78999999999999999988865553
|
| >4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A | Back alignment and structure |
|---|
Probab=98.01 E-value=2.6e-05 Score=68.14 Aligned_cols=152 Identities=13% Similarity=0.198 Sum_probs=96.9
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCce--EEEEEeCCCCc----cccCCCchhhcccCHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVR--CVLLRSLVKDV----FCAGADLKHRLTLNEDQIRSFVS 118 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~--vvVl~g~~g~~----F~~G~Dl~~~~~~~~~~~~~~~~ 118 (333)
+++|. .|..| ++.++...+...|..++.++..+ .+.|.+. |.. ...-+| ..
T Consensus 27 ~~Rii--fl~~~-----I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSp-G~~~~~~~~~~G~---------------v~ 83 (205)
T 4gm2_A 27 SKRII--FLSSP-----IYPHISEQIISQLLYLEYESKRKPIHLYINST-GDIDNNKIINLNG---------------IT 83 (205)
T ss_dssp TTTEE--EECSC-----CCHHHHHHHHHHHHHHHHHCTTCCEEEEEEEC-TTEETTEESCTTH---------------HH
T ss_pred cCCEE--EECCE-----EcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCC-CCCCcCCCCCCCC---------------HH
Confidence 45543 45554 88999999999998887533222 3444554 310 000011 12
Q ss_pred HHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCC--EEEEeCCeEEeccccccCc----cCChhh----h--------
Q psy503 119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACD--IRVAASNVRMGLVETKLAI----IPGAGG----T-------- 180 (333)
Q Consensus 119 ~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD--~rias~~a~f~~pe~~~Gl----~p~~g~----~-------- 180 (333)
....++..+...+.||...+-|.|.+.|..|++++| .|++.+++++.+-....|. ..+..- .
T Consensus 84 aglaIyd~m~~~~~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i~ 163 (205)
T 4gm2_A 84 DVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVI 163 (205)
T ss_dssp HHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccccccCHHHHHHHHHHHHHHHHHHH
Confidence 223455666677899999999999999999999999 5999999998876655433 111000 0
Q ss_pred hhccccc--CHHHHHHHHHcCCCCCHHHHHHcCCcceecCC
Q psy503 181 QRLPRIV--GIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 181 ~~L~r~i--G~~~a~~llltG~~isa~eAl~~Glv~~vv~~ 219 (333)
..+.+.- ......+++-....++|+||+++||||+|+++
T Consensus 164 ~iya~~TG~~~e~I~~~m~rd~~msa~EA~eyGlID~V~~~ 204 (205)
T 4gm2_A 164 EIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEK 204 (205)
T ss_dssp HHHHHHHTCCHHHHHHHTTSCEEEEHHHHHHTTSCSEECCC
T ss_pred HHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCccEeecC
Confidence 0111111 24455555656677899999999999999974
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00021 Score=70.96 Aligned_cols=150 Identities=14% Similarity=0.164 Sum_probs=99.0
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l 127 (333)
|.++-.+..-..-++.....+.+.++++.+.+. .+-+|.|.-+ ++ .-+.+ .... +..+..++..+
T Consensus 99 v~v~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~dS-gG-----aRmqE-------g~~~-l~~~~~i~~~~ 163 (530)
T 3iav_A 99 VAVFSQDFTVFGGALGEVYGQKIVKVMDFALKT-GCPVVGINDS-GG-----ARIQE-------GVAS-LGAYGEIFRRN 163 (530)
T ss_dssp EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECC-CS-----BCGGG-------THHH-HHHHHHHHHHH
T ss_pred EEEEEECCCcceEeccHHHHHHHHHHHHHHHHc-CCCEEEEEcC-CC-----cchhh-------hhhh-HHHHHHHHHHH
Confidence 444444444467889999999999999988765 4556666654 33 33332 1111 12222333332
Q ss_pred hcC--CCcEEEEechhhhHhhHHHHHhCCEEEEeCC-eEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCH
Q psy503 128 ESI--PVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDS 204 (333)
Q Consensus 128 ~~~--~kP~Iaav~G~a~GgG~~Lal~cD~rias~~-a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa 204 (333)
..+ .+|+|+.|.|+|.|||......||++|++++ +.+++. |+...+ ..+|+.+++
T Consensus 164 ~~~s~~iP~Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~a--------------------GP~vi~--~~~ge~v~~ 221 (530)
T 3iav_A 164 THASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT--------------------GPDVIK--TVTGEDVGF 221 (530)
T ss_dssp HHTTTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHH--HHHCCCCCH
T ss_pred HHHcCCCCEEEEEecCcchHHHHHHHhCCEEEEecCCcEEEec--------------------CHHHHH--HHhCCcCCh
Confidence 222 3999999999999999988889999999876 776642 222222 257889998
Q ss_pred HHH-------HHcCCcceecCCCCChhHHHHHHHHHHHHH
Q psy503 205 TEA-------KSIGLVNTLTPQNPNQNAAYLASLRIAEDI 237 (333)
Q Consensus 205 ~eA-------l~~Glv~~vv~~~~~~~~l~~~a~~~a~~i 237 (333)
++. ...|++|.++++ .+++++.+.++..-+
T Consensus 222 e~LGGa~~h~~~sGv~d~va~d---e~~a~~~~r~~ls~l 258 (530)
T 3iav_A 222 EELGGARTHNSTSGVAHHMAGD---EKDAVEYVKQLLSYL 258 (530)
T ss_dssp HHHHBHHHHHHTSCCCSEEESS---HHHHHHHHHHHHHHS
T ss_pred hhcchHHHHHhccCceeEEecC---hHHHHHHHHHHHHhc
Confidence 876 579999999997 345666666655544
|
| >2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00032 Score=64.37 Aligned_cols=152 Identities=11% Similarity=0.090 Sum_probs=96.9
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHH--HHHHHHHHHH
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRS--FVSTLRYMTC 125 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~--~~~~~~~l~~ 125 (333)
|+++-.+..-..-+++....+.+.++++.+.+.. +-+|.|... +++ -..+ .... ....+...+.
T Consensus 123 V~v~a~d~~~~gGs~g~~~~~K~~r~ie~A~~~~-lPlI~l~ds-gGa-----r~qE-------Gi~sl~q~aki~~~l~ 188 (285)
T 2f9i_B 123 FGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENR-LPFILFSAS-GGA-----RMQE-------GIISLMQMGKTSVSLK 188 (285)
T ss_dssp EEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEE-CSC-----CGGG-------HHHHHHHHHHHHHHHH
T ss_pred EEEEEEccccccCcCCHHHHHHHHHHHHHHHHcC-CCEEEEEeC-CCc-----chhh-------hhhhHhHHHHHHHHHH
Confidence 4555444333567899999999999999887764 567777665 332 1221 2211 1233344556
Q ss_pred HHhcCCCcEEEEechhhhHhhHHH-HHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCH
Q psy503 126 QLESIPVPVLAVLDGSAYGGGLEM-ALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDS 204 (333)
Q Consensus 126 ~l~~~~kP~Iaav~G~a~GgG~~L-al~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa 204 (333)
++.....|.|+.|-|+|.||+... ++.+|++++.+++.+++-.. -+....+-+.++ -+.-++
T Consensus 189 ~~s~~~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i~~aGP-------~vi~~~~~~~~~----------e~~~~A 251 (285)
T 2f9i_B 189 RHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGR-------RVIEQTINEKLP----------DDFQTA 251 (285)
T ss_dssp HHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCH-------HHHHHHHTSCCC----------TTTTBH
T ss_pred HHHcCCCCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEEEEcCH-------HHHHHHhcccch----------HhHhhH
Confidence 666788999999999999999654 78999999999987774221 112222222221 111257
Q ss_pred HHHHHcCCcceecCCCCChhHHHHHHHHHH
Q psy503 205 TEAKSIGLVNTLTPQNPNQNAAYLASLRIA 234 (333)
Q Consensus 205 ~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a 234 (333)
+.+++.|+||.|+++ +++.+...++.
T Consensus 252 e~~~~~G~iD~Iv~~----~e~r~~l~~~L 277 (285)
T 2f9i_B 252 EFLLEHGQLDKVVHR----NDMRQTLSEIL 277 (285)
T ss_dssp HHHHHTTCCSEECCG----GGHHHHHHHHH
T ss_pred HHHHhcCCccEEeCh----HHHHHHHHHHH
Confidence 888899999999996 44444444443
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00043 Score=68.71 Aligned_cols=148 Identities=14% Similarity=0.168 Sum_probs=94.8
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l 127 (333)
|.++-.+..-..-++.....+.+.++++.+.+.. +-+|.|.-+ + |..+.+ .......+.+.+..+.. +
T Consensus 107 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~-lPvI~l~dS-G-----GARmqe----g~~sl~~~~~i~~~~~~-~ 174 (531)
T 3n6r_B 107 VYVFSQDFTVLGGSVSETHSKKICKIMDMAMQNG-APVIGINDS-G-----GARIQE----GVDSLAGYGEVFQRNIM-A 174 (531)
T ss_dssp EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECC-C-----CBCGGG----THHHHHHHHHHHHHHHH-T
T ss_pred EEEEEECCCcccccccHHHHHHHHHHHHHHHHcC-CCEEEEeCC-C-----ccccCc----ccchhhhHHHHHHHHHH-H
Confidence 4444444444668899999999999999887653 456666654 3 333333 11111122222222221 2
Q ss_pred hcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCC-eEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHH
Q psy503 128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTE 206 (333)
Q Consensus 128 ~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~-a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~e 206 (333)
.-..|+|++|.|+|.|||......||++|+.++ +.+++ -|+...+ ..+|+.+++++
T Consensus 175 -s~~iP~Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~--------------------aGP~vI~--~~~ge~v~~E~ 231 (531)
T 3n6r_B 175 -SGVVPQISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFV--------------------TGPDVVK--TVTNEQVSAEE 231 (531)
T ss_dssp -TTTSCEEEEECSCCBGGGGHHHHHSSEEEEETTTCBCBS--------------------SCHHHHH--HHHCCCCCHHH
T ss_pred -hCCCCEEEEEeCCcchHHHHHhhhCCEEEEecCCceEee--------------------cCHHHHH--HHhCCccChhh
Confidence 235899999999999999988888999999985 66543 1221111 25689999999
Q ss_pred H-------HHcCCcceecCCCCChhHHHHHHHHH
Q psy503 207 A-------KSIGLVNTLTPQNPNQNAAYLASLRI 233 (333)
Q Consensus 207 A-------l~~Glv~~vv~~~~~~~~l~~~a~~~ 233 (333)
. .+.|++|.++++ .+++.+.+.++
T Consensus 232 LGGa~~h~~~sG~~d~v~~~---e~~a~~~~r~l 262 (531)
T 3n6r_B 232 LGGATTHTRKSSVADAAFEN---DVEALAEVRRL 262 (531)
T ss_dssp HHBHHHHHHTTSCCSEEESS---HHHHHHHHHHH
T ss_pred cchHHHHhhccCcceEEeCC---HHHHHHHHHHH
Confidence 8 889999999996 23344444433
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.002 Score=64.02 Aligned_cols=150 Identities=17% Similarity=0.226 Sum_probs=96.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l 127 (333)
|.++-.+..-..-++.....+.+.++++.+.+. .+-+|.|..+ .|..+.+-. .....+.+.+..+. .+
T Consensus 97 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~~S------GGARmqeg~----~sl~~~~~i~~~~~-~~ 164 (523)
T 1on3_A 97 VHAASQDFTVMGGSAGETQSTKVVETMEQALLT-GTPFLFFYDS------GGARIQEGI----DSLSGYGKMFFANV-KL 164 (523)
T ss_dssp EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEEE------CSBCGGGTH----HHHHHHHHHHHHHH-HH
T ss_pred EEEEEEcCCccCCcCcHHHHHHHHHHHHHHHHc-CCCEEEEEcC------CCCChhhHH----HHHHHHHHHHHHHH-Hh
Confidence 444444444467889999999999999988765 4556666654 344444311 11112222223332 22
Q ss_pred hcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHH--
Q psy503 128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDST-- 205 (333)
Q Consensus 128 ~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~-- 205 (333)
.-..|.|+.+.|+|.||+......||++|+.+++.+++. |+..... .+|+.++.+
T Consensus 165 -s~~iP~Isvv~gp~~GG~a~s~~l~D~ii~~~~a~i~~a--------------------GP~vI~~--~~ge~~~~e~l 221 (523)
T 1on3_A 165 -SGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFIT--------------------GPQVIKS--VTGEDVTADEL 221 (523)
T ss_dssp -TTTSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESS--------------------CHHHHHH--HHCCCCCHHHH
T ss_pred -cCCCCEEEEEcCCCchHHHHHHhhCCeEEEeCCCEEEec--------------------CHHHHHH--HhCCcCChHhc
Confidence 345999999999999999999999999999998876643 2221111 357777754
Q ss_pred ---HHH--HcCCcceecCCCCChhHHHHHHHHHHH
Q psy503 206 ---EAK--SIGLVNTLTPQNPNQNAAYLASLRIAE 235 (333)
Q Consensus 206 ---eAl--~~Glv~~vv~~~~~~~~l~~~a~~~a~ 235 (333)
|.+ +.|++|.++++ +.++.+.+.++..
T Consensus 222 ggae~h~~~~G~vd~vv~d---~~~~~~~~r~lL~ 253 (523)
T 1on3_A 222 GGAEAHMAISGNIHFVAED---DDAAELIAKKLLS 253 (523)
T ss_dssp HSHHHHHHTTCCCSEEESS---HHHHHHHHHHHHH
T ss_pred ccHHHHhhccCceEEEeCC---HHHHHHHHHHHHH
Confidence 323 58999999996 3445555444443
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0018 Score=64.62 Aligned_cols=148 Identities=16% Similarity=0.170 Sum_probs=93.3
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l 127 (333)
|.++-.+..-..-++.....+.+.++++.+.+. .+-+|.|..+ .|..+.+-. .....+.+.+..+. .+
T Consensus 110 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~dS------GGARmqeg~----~sl~~~~~i~~~~~-~~ 177 (548)
T 2bzr_A 110 VCIFSQDATVFGGSLGEVYGEKIVKVQELAIKT-GRPLIGINDG------AGARIQEGV----VSLGLYSRIFRNNI-LA 177 (548)
T ss_dssp EEEEEECTTSGGGCCCHHHHHHHHHHHHHHHHH-TCCEEEEECC------CSCCGGGTT----HHHHHHHHHHHHHH-HT
T ss_pred EEEEEEcCccccCCCChhHHHHHHHHHHHHHHc-CCCEEEEEcC------CCCCchhHH----HHHHHHHHHHHHHH-Hh
Confidence 444444444467789999999999999988765 4556766664 345554321 11112222222222 12
Q ss_pred hcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCC-eEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHH-
Q psy503 128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDST- 205 (333)
Q Consensus 128 ~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~-a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~- 205 (333)
....|.|+.|.|+|.||+......||++|+.++ +.+++. |+...+. .+|+.++.+
T Consensus 178 -s~~iP~Isvv~gp~~GG~a~s~al~D~ii~~~~~a~i~~a--------------------GP~vI~~--~~ge~v~~e~ 234 (548)
T 2bzr_A 178 -SGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFIT--------------------GPDVIKT--VTGEEVTMEE 234 (548)
T ss_dssp -TTTSCEEEEECSEEESGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHHH--HHCCCCCHHH
T ss_pred -cCCCcEEEEecCCCchHHHHHHHhCCeEEeccCceeEEec--------------------cHHHHHH--HhCCcCChHh
Confidence 334999999999999999988889999999986 776643 2222221 357777764
Q ss_pred ----HHH--HcCCcceecCCCCChhHHHHHHHHH
Q psy503 206 ----EAK--SIGLVNTLTPQNPNQNAAYLASLRI 233 (333)
Q Consensus 206 ----eAl--~~Glv~~vv~~~~~~~~l~~~a~~~ 233 (333)
|.+ +.|++|.++++ +.++.+.+.++
T Consensus 235 lggae~h~~~sG~~d~vv~d---~~~~~~~~r~l 265 (548)
T 2bzr_A 235 LGGAHTHMAKSGTAHYAASG---EQDAFDYVREL 265 (548)
T ss_dssp HHBHHHHHHTSSCCSEEESS---HHHHHHHHHHH
T ss_pred cccHHHHhhccCceeEEeCC---HHHHHHHHHHH
Confidence 323 58999999996 34444444333
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0033 Score=62.41 Aligned_cols=151 Identities=16% Similarity=0.182 Sum_probs=95.3
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l 127 (333)
|.++-.+..-..-++.....+.+.++++.+.+. .+-+|.|..+ .|..+.+-. .....+.+.+..+. .+
T Consensus 93 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~~P~I~l~~S------GGaRmqeg~----~sl~~~~~i~~~~~-~~ 160 (522)
T 1x0u_A 93 VFAYAQDFTVLGGSLGETHANKIVRAYELALKV-GAPVVGINDS------GGARIQEGA----LSLEGYGAVFKMNV-MA 160 (522)
T ss_dssp EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECC------CSBCGGGTH----HHHHHHHHHHHHHH-HH
T ss_pred EEEEEecCceeCccccHHHHHHHHHHHHHHHHc-CCCEEEEEcC------CCCChhHHH----HHHHHHHHHHHHHH-Hh
Confidence 444444444467789999999999999988765 4557777654 344444311 11112222223332 22
Q ss_pred hcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCC-e-EEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHH
Q psy503 128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-V-RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDST 205 (333)
Q Consensus 128 ~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~-a-~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~ 205 (333)
.-..|.|+.+.|+|.||+......||++|+.++ + .+++. |+..... .+|+.++.+
T Consensus 161 -s~~iP~Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~a--------------------GP~vI~~--~~ge~~~~e 217 (522)
T 1x0u_A 161 -SGVIPQITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFVT--------------------GPEITKV--VLGEEVSFQ 217 (522)
T ss_dssp -TTTSCEEEEECSEEEGGGGHHHHHSSEEEEECSTTCEEESS--------------------CHHHHHH--TTCCCCCHH
T ss_pred -CCCCcEEEEEcCCCchHHHHHHhcCCeEEEecCCccEEEec--------------------CHHHHHH--HhCCcCChh
Confidence 345999999999999999999999999999987 7 66541 1111111 456777654
Q ss_pred -----HHH--HcCCcceecCCCCChhHHHHHHHHHHHH
Q psy503 206 -----EAK--SIGLVNTLTPQNPNQNAAYLASLRIAED 236 (333)
Q Consensus 206 -----eAl--~~Glv~~vv~~~~~~~~l~~~a~~~a~~ 236 (333)
|.+ +.|++|.++++ +.++.+.+.++..-
T Consensus 218 ~lggae~~~~~~G~~d~vv~~---~~~~~~~~~~ll~~ 252 (522)
T 1x0u_A 218 DLGGAVVHATKSGVVHFMVDS---EQEAINLTKRLLSY 252 (522)
T ss_dssp HHHBHHHHHHTTCCCSEEESC---HHHHHHHHHHHHHH
T ss_pred hcchHHHHhhcCceeEEEeCC---HHHHHHHHHHHHHh
Confidence 323 58999999996 34555555555433
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0058 Score=60.66 Aligned_cols=148 Identities=15% Similarity=0.166 Sum_probs=91.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l 127 (333)
|.++-.+..-+.-++.....+.+.++++.+.+.. +-+|.|.-+ ++++ +.+- ......+.+.+..+. .
T Consensus 100 v~v~a~D~t~~gGS~g~~~~~Ki~r~~e~A~~~~-lPvI~l~dS-gGAR-----~qeg----~~~l~g~~~~~~~~~-~- 166 (527)
T 1vrg_A 100 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMG-IPVIGINDS-GGAR-----IQEG----VDALAGYGEIFLRNT-L- 166 (527)
T ss_dssp EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEEE-CSBC-----GGGT----HHHHHHHHHHHHHHH-H-
T ss_pred EEEEEEeccccCccccHHHHHHHHHHHHHHHHcC-CCEEEEECC-CCCC-----ccch----hHHHHHHHHHHHHHH-H-
Confidence 4444444444678899999999999999887653 446666554 3333 3221 011112222233332 2
Q ss_pred hcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCC-eEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHH-
Q psy503 128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDST- 205 (333)
Q Consensus 128 ~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~-a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~- 205 (333)
.....|+|+.|.|+|.|||......||++|+.++ +.+++ .|+..... .+|+.++.+
T Consensus 167 ~s~~iP~Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~i~~--------------------aGP~vi~~--~~ge~v~~e~ 224 (527)
T 1vrg_A 167 ASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFI--------------------TGPNVIKA--VTGEEISQED 224 (527)
T ss_dssp HTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBS--------------------SCHHHHHH--HHCCCCCHHH
T ss_pred hCCCCCEEEEEeCCCchHHHHHHHcCCeEEEecCceEEEe--------------------cCHHHHHH--HhCCCCCccc
Confidence 2456999999999999999988889999999987 66432 12211111 356777653
Q ss_pred ----HHH--HcCCcceecCCCCChhHHHHHHHHH
Q psy503 206 ----EAK--SIGLVNTLTPQNPNQNAAYLASLRI 233 (333)
Q Consensus 206 ----eAl--~~Glv~~vv~~~~~~~~l~~~a~~~ 233 (333)
|.+ +.|++|.++++ ..++.+.+.++
T Consensus 225 lggae~~~~~~G~vd~vv~d---~~~~~~~~~~~ 255 (527)
T 1vrg_A 225 LGGAMVHNQKSGNAHFLADN---DEKAMSLVRTL 255 (527)
T ss_dssp HHBHHHHHHTSCCCSEEESS---HHHHHHHHHHH
T ss_pred cccHHHHhhcccceEEEecC---HHHHHHHHHHH
Confidence 322 58999999996 34444444443
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0035 Score=62.48 Aligned_cols=141 Identities=18% Similarity=0.215 Sum_probs=90.6
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l 127 (333)
|.++-.+..-+.-++.+...+.+.++++.+.+. .+-+|.|.-+ ++++.. ..-..+.... .. ..+......+
T Consensus 123 v~V~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~-~lPvI~l~dS-gGARl~-~q~~~~~~~~--~~----~~i~~~~~~l 193 (555)
T 3u9r_B 123 CMIVGNDATVKGGTYYPLTVKKHLRAQAIALEN-RLPCIYLVDS-GGANLP-RQDEVFPDRE--HF----GRIFFNQANM 193 (555)
T ss_dssp EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECC-CCBCGG-GGGGTSSSTT--ST----THHHHHHHHH
T ss_pred EEEEEECCccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEECC-CCCCCC-Ccceeecccc--cH----HHHHHHHHHH
Confidence 444445544466788999999999999988765 3556666655 444421 1001111000 00 1111122344
Q ss_pred hcCCCcEEEEechhhhHhhHHHHHhCCEEEEeC-CeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHH
Q psy503 128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS-NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTE 206 (333)
Q Consensus 128 ~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~-~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~e 206 (333)
.....|+|+.|.|+|.|||......||++|+.+ ++.+++ -|+...+ ..+|+.+++++
T Consensus 194 s~~giP~Isvv~G~~~GGga~~~a~~d~vim~e~~a~i~~--------------------aGP~vik--~~~ge~~~~e~ 251 (555)
T 3u9r_B 194 SARGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQATIFL--------------------AGPPLVK--AATGEVVSAEE 251 (555)
T ss_dssp HHTTCCEEEEECSCCBGGGGHHHHTSSEEEEETTTCBCBS--------------------SCHHHHH--HHHCCCCCHHH
T ss_pred hcCCCCEEEEEecCCCccHHHHHHhCCceEEecCCceEEE--------------------ccHHHHH--HHhcCccChhh
Confidence 456799999999999999999999999988776 354332 1221111 25789999998
Q ss_pred H-------HHcCCcceecCC
Q psy503 207 A-------KSIGLVNTLTPQ 219 (333)
Q Consensus 207 A-------l~~Glv~~vv~~ 219 (333)
. ...|++|.++++
T Consensus 252 LGGa~~h~~~sGv~d~v~~d 271 (555)
T 3u9r_B 252 LGGADVHCKVSGVADHYAED 271 (555)
T ss_dssp HHBHHHHHHTTCSCSEEESS
T ss_pred ccchhhhhhccCceeEEeCC
Confidence 8 789999999997
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.002 Score=64.01 Aligned_cols=140 Identities=14% Similarity=0.190 Sum_probs=91.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 59 ~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
.-+++.+....+.+.++.+++. .+-+|.|.-. ++ |..|.+- +....+..+..++..+.....|.|+.|
T Consensus 338 gG~l~~~~~~K~ar~i~~a~~~-~~Plv~l~ds-~G-~~~G~~~---------E~~G~~~~~Ak~l~~~~~~~vP~Isvi 405 (522)
T 1x0u_A 338 GGSIDIDAADKAARFIRFCDAF-NIPLISLVDT-PG-YVPGTDQ---------EYKGIIRHGAKMLYAFAEATVPKITVI 405 (522)
T ss_dssp GGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CC-BCCSHHH---------HHTTHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred CCCcCHHHHHHHHHHHHHHhhC-CCCEEEEecC-CC-CCCchHH---------HHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4679999999999999988764 4567777665 43 4434221 122233455667788888999999999
Q ss_pred chhhhHhhHHHHHh----CCEEEEeCCeEEeccccccCccCChhhhhhcccc-cC---------HHHHHHHHHcCCCCCH
Q psy503 139 DGSAYGGGLEMALA----CDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRI-VG---------IPLAKELIYTGRLVDS 204 (333)
Q Consensus 139 ~G~a~GgG~~Lal~----cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~-iG---------~~~a~~llltG~~isa 204 (333)
-|.|.|||...... +|++++.+++.+++- .+-|....+-+. +- .....+. .-..-++
T Consensus 406 ~g~~~GGg~~~~a~~a~~~D~v~a~p~A~i~v~-------gpegaa~Il~r~~i~~~~d~~~~~~~l~~~y--~~~~~~~ 476 (522)
T 1x0u_A 406 VRKSYGGAHIAMSIKSLGADLVYAWPTAEIAVT-------GPEGAVRILYRKEIQQASNPDDVLKQRIAEY--RKLFANP 476 (522)
T ss_dssp EEEEEHHHHHHTCCGGGTCSEEEECTTCEEESS-------CHHHHHHHHTSSSSSSSSSSSSSSHHHHHHH--HHHHSSS
T ss_pred eCCcccHHHHHhcccccCCCEEEEeCCCEEEec-------CHHHHHHHHhhhhhhcccCHHHHHHHHHHHH--HHhcCCH
Confidence 99999998755544 999999998887642 223332222221 11 1111111 0012456
Q ss_pred HHHHHcCCcceecCC
Q psy503 205 TEAKSIGLVNTLTPQ 219 (333)
Q Consensus 205 ~eAl~~Glv~~vv~~ 219 (333)
..+++.|+||.|+++
T Consensus 477 ~~~~~~G~iD~II~p 491 (522)
T 1x0u_A 477 YWAAEKGLVDDVIEP 491 (522)
T ss_dssp HHHHHTTSSSEECCG
T ss_pred HHHHhcCCCcEeECH
Confidence 889999999999996
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0087 Score=59.43 Aligned_cols=141 Identities=13% Similarity=0.199 Sum_probs=91.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec
Q psy503 60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (333)
Q Consensus 60 Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~ 139 (333)
-.++++-.....+.++.+++. .+-+|.|.-. ++ |..|.+- +.......+..++..+.....|+|+.|-
T Consensus 344 G~~~~~~~~Kaar~i~~a~~~-~~Plv~lvDt-pG-~~~G~~~---------E~~g~~~~~A~~~~a~~~~~vP~isvI~ 411 (527)
T 1vrg_A 344 GVLDIDSSDKAARFIRFLDAF-NIPILTFVDT-PG-YLPGVAQ---------EHGGIIRHGAKLLYAYSEATVPKITVIL 411 (527)
T ss_dssp GCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CC-BCCCHHH---------HHTTHHHHHHHHHHHHHHCCSCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhhc-CCCeEEEecC-CC-CcCchhh---------HHhHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 579999999999999888654 5566666665 43 4444321 2223445556777788889999999999
Q ss_pred hhhhHhhHHHHHh----CCEEEEeCCeEEeccccccCccCChhhhhhccccc-----CHHHHHH-HH--HcCCCCCHHHH
Q psy503 140 GSAYGGGLEMALA----CDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIV-----GIPLAKE-LI--YTGRLVDSTEA 207 (333)
Q Consensus 140 G~a~GgG~~Lal~----cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~i-----G~~~a~~-ll--ltG~~isa~eA 207 (333)
|.|.|||+.-... +|+++|.+++.++ ...+.|+...+-+.- .+...+. +. +.-+.-++..+
T Consensus 412 g~~~gGg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~~~~~~p~~~ 484 (527)
T 1vrg_A 412 RKAYGGAYIAMGSKHLGADMVLAWPSAEIA-------VMGPEGAANIIFKREIEASSNPEETRRKLIEEYKQQFANPYIA 484 (527)
T ss_dssp EEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHTSSHHHH
T ss_pred CCcccHHHHHhcCCCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHhhCCHHHH
Confidence 9999888754433 8998888888766 333344443333211 1111111 21 11123677889
Q ss_pred HHcCCcceecCC
Q psy503 208 KSIGLVNTLTPQ 219 (333)
Q Consensus 208 l~~Glv~~vv~~ 219 (333)
.+.|+||.|+++
T Consensus 485 ~~~g~iD~II~p 496 (527)
T 1vrg_A 485 ASRGYVDMVIDP 496 (527)
T ss_dssp HHTTSSSEECCG
T ss_pred HHcCCCCeeeCH
Confidence 999999999996
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.02 Score=56.72 Aligned_cols=141 Identities=16% Similarity=0.179 Sum_probs=92.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec
Q psy503 60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (333)
Q Consensus 60 Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~ 139 (333)
..++++-.....+.++.+++ .++-+|.|.-. ++ |..|.+- +.....+....++..+.+...|+|+.|-
T Consensus 340 G~~~~~~a~Kaar~i~~~~~-~~iPlv~lvDt-pG-f~~G~~~---------E~~Gi~~~~A~~l~a~a~~~vP~itvI~ 407 (523)
T 1on3_A 340 GCLDINASDKAAEFVNFCDS-FNIPLVQLVDV-PG-FLPGVQQ---------EYGGIIRHGAKMLYAYSEATVPKITVVL 407 (523)
T ss_dssp GCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEE-CC-BCCCHHH---------HHTTHHHHHHHHHHHHHHCCSCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeC-CC-cCcchHH---------HHhhHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 57999999999999988865 45567777665 44 5555322 2223455567778888889999999999
Q ss_pred hhhhHhhHHHHHh----CCEEEEeCCeEEeccccccCccCChhhhhhcccc-c----CHHHHHH-HHH--cCCCCCHHHH
Q psy503 140 GSAYGGGLEMALA----CDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRI-V----GIPLAKE-LIY--TGRLVDSTEA 207 (333)
Q Consensus 140 G~a~GgG~~Lal~----cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~-i----G~~~a~~-lll--tG~~isa~eA 207 (333)
|.+.|||+.-... +|+++|.+++.++ ...+.|....+-+. + .....+. +.- .-+.-++..+
T Consensus 408 g~~~Ggg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~~~~~~p~~~ 480 (523)
T 1on3_A 408 RKAYGGSYLAMCNRDLGADAVYAWPSAEIA-------VMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVA 480 (523)
T ss_dssp EEEEHHHHHTTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHHSSHHHH
T ss_pred CCcccHHHHHhcccCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHhhCCHHHH
Confidence 9999988754444 8888888777766 33444444333322 1 1111111 111 1112567889
Q ss_pred HHcCCcceecCC
Q psy503 208 KSIGLVNTLTPQ 219 (333)
Q Consensus 208 l~~Glv~~vv~~ 219 (333)
.+.|+||.|+++
T Consensus 481 a~~g~iD~II~p 492 (523)
T 1on3_A 481 AARGQVDDVIDP 492 (523)
T ss_dssp HHTTSSSEECCG
T ss_pred HhcCCCCEeeCH
Confidence 999999999996
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.02 Score=57.45 Aligned_cols=172 Identities=10% Similarity=0.078 Sum_probs=95.8
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchh-hcccCHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH-RLTLNEDQIRSFVSTLRYMTCQ 126 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~-~~~~~~~~~~~~~~~~~~l~~~ 126 (333)
|.++-.+..-+.-++.+...+.+.++++.+.+.. +-+|.|.-+ ++++.. ..+ ... .... +-+ +..-...
T Consensus 108 V~V~a~D~tv~gGS~g~~~~~Ki~Ra~e~A~~~~-lPvI~l~dS-gGArl~---~qe~~~~-~l~~---~g~-if~~~~~ 177 (588)
T 3gf3_A 108 VYIVASDNKKMAGAWVPGQAENLIRCSDAAKMMH-LPLIYLLNC-SGVEFP---NQDKVYP-NRRG---GGT-PFFRNSE 177 (588)
T ss_dssp EEEEEECTTSGGGCBCTTHHHHHHHHHHHHHHHT-CCEEEEECC-CCBCGG---GHHHHSS-STTS---TTH-HHHHHHH
T ss_pred EEEEEECCcccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEcC-CCcCcc---ccccccc-chhh---HHH-HHHHHHH
Confidence 3444444434667888889999999999887653 456666655 444431 011 000 0000 001 1112233
Q ss_pred HhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEecccccc--CccCChhhhhhcccc---cCHHHHHHHHHcCCC
Q psy503 127 LESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKL--AIIPGAGGTQRLPRI---VGIPLAKELIYTGRL 201 (333)
Q Consensus 127 l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~--Gl~p~~g~~~~L~r~---iG~~~a~~llltG~~ 201 (333)
+.....|+|+.|-|+|.|||...++++|++++.+++.+++....+ |+-|.+ ...+.- +......+-..+.+.
T Consensus 178 ls~~~iP~Isvv~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI~~~~p~g---~~~~~~~~~~~~~~~ge~~vs~ee 254 (588)
T 3gf3_A 178 LNQLGIPVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPKG---YIDDEAAEQIIAAQIENSKLKVPA 254 (588)
T ss_dssp HHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESSCCC------------------CHHHHHHHHHHHHTTCCC
T ss_pred HhcCCCCEEEEEeCCCCchhhhHhhCCeEEEEECCcEEEecChhhhcccCccc---cccccchhhhhhhhccccccChhh
Confidence 445679999999999999998778888998999888877643321 111100 001110 000111122246777
Q ss_pred CCHHHHH--HcCCcceecCCCCChhHHHHHHHHHHH
Q psy503 202 VDSTEAK--SIGLVNTLTPQNPNQNAAYLASLRIAE 235 (333)
Q Consensus 202 isa~eAl--~~Glv~~vv~~~~~~~~l~~~a~~~a~ 235 (333)
+.+.+.. ..|++|.++++ .++.++.+.++..
T Consensus 255 LGGa~~h~~~sGv~d~~a~d---e~~al~~~r~~ls 287 (588)
T 3gf3_A 255 PGSVPIHYDETGFFREVYQN---DLGVIDGIKKYIS 287 (588)
T ss_dssp TTBHHHHTTTSCCSCEEESS---HHHHHHHHHHHHH
T ss_pred ccchhhhccccccceEEeCC---HHHHHHHHHHHHH
Confidence 8777777 58999999997 3344444444443
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.019 Score=56.89 Aligned_cols=152 Identities=19% Similarity=0.327 Sum_probs=98.2
Q ss_pred EEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHH
Q psy503 49 VELCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (333)
Q Consensus 49 ~~Itln~p~-~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l 127 (333)
.-|-=|+|. ..-.++++......+.++..++. ++-+|.|.-. ++ |..|.+- +.....+....++..+
T Consensus 334 Vgvian~~~~~~G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDt-pG-f~~G~~~---------E~~gi~~~~Ak~l~a~ 401 (530)
T 3iav_A 334 VGIVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDV-PG-FLPGVDQ---------EHDGIIRRGAKLIFAY 401 (530)
T ss_dssp EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CC-BCCCHHH---------HHTTHHHHHHHHHHHH
T ss_pred EEEEEecCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeeC-CC-CCccHHH---------HHhhHHHHHHHHHHHH
Confidence 334444543 23579999999999999877764 4667777666 44 6666442 2234566777888899
Q ss_pred hcCCCcEEEEechhhhHhhHHHHHh-----CCEEEEeCCeEEeccccccCccCChhhhhhc-ccccC------HHHHHHH
Q psy503 128 ESIPVPVLAVLDGSAYGGGLEMALA-----CDIRVAASNVRMGLVETKLAIIPGAGGTQRL-PRIVG------IPLAKEL 195 (333)
Q Consensus 128 ~~~~kP~Iaav~G~a~GgG~~Lal~-----cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L-~r~iG------~~~a~~l 195 (333)
.+...|+|+.|-|.+.|||. ++++ .|+++|.+++.++. ..+.++...+ .+.+- ...-.++
T Consensus 402 a~a~vP~itvI~g~~~GGa~-~am~~~~~~~d~~~awp~a~~~V-------m~~egaa~il~r~~~~~~~~d~~~~~~~~ 473 (530)
T 3iav_A 402 AEATVPLITVITRKAFGGAY-VVMGSKHLGADLNLAWPTAQIAV-------MGAQGAVNILHRRTIADAGDDAEATRARL 473 (530)
T ss_dssp HHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTSTTTSTTCTTCHHHHHHH
T ss_pred HhCCCCEEEEEeCCcchHHH-HHhcCCCCCCCEEEEcCCceEec-------CCHHHHHHHHhhhhhhhcccCHHHHHHHH
Confidence 99999999999999998766 4444 79999988887763 3333333322 22221 1111111
Q ss_pred H--HcCCCCCHHHHHHcCCcceecCCC
Q psy503 196 I--YTGRLVDSTEAKSIGLVNTLTPQN 220 (333)
Q Consensus 196 l--ltG~~isa~eAl~~Glv~~vv~~~ 220 (333)
. +.-+.-++..|.+.|+||.|+++.
T Consensus 474 ~~~y~~~~~~p~~aa~~~~vD~VIdP~ 500 (530)
T 3iav_A 474 IQEYEDALLNPYTAAERGYVDAVIMPS 500 (530)
T ss_dssp HHHHHHHHSSSHHHHHTTSSSEECCGG
T ss_pred HHHHHHhcCCHHHHHhcCCCCcccCHH
Confidence 1 111123677888999999999973
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.017 Score=57.58 Aligned_cols=142 Identities=19% Similarity=0.282 Sum_probs=90.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 59 ~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
.-.++++-.....+.++.+++. .+-+|.|.-. ++ |..|.+- +.....+....++..+.+...|+|+.|
T Consensus 360 ~G~l~~~~a~Kaar~i~~a~~~-~iPlv~lvDt-~G-f~~G~~~---------E~~Gi~~~ga~~l~a~~~~~VP~isvI 427 (548)
T 2bzr_A 360 AGCLDINASEKAARFVRTCDCF-NIPIVMLVDV-PG-FLPGTDQ---------EYNGIIRRGAKLLYAYGEATVPKITVI 427 (548)
T ss_dssp GGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CC-BCCCHHH---------HHTTHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeec-cC-CCCChHH---------HHhhHHHHHHHHHHHHhCCCCCEEEEE
Confidence 3579999999999999988754 4556666655 44 5555432 222334455667777788999999999
Q ss_pred chhhhHhhHHHHH----hCCEEEEeCCeEEeccccccCccCChhhhhhccc-ccCH------H--HHHH-HHH--cCCCC
Q psy503 139 DGSAYGGGLEMAL----ACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPR-IVGI------P--LAKE-LIY--TGRLV 202 (333)
Q Consensus 139 ~G~a~GgG~~Lal----~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r-~iG~------~--~a~~-lll--tG~~i 202 (333)
-|.|.|||..-.. .+|++++.++++++ +..+.|+...+-+ .+-. . ..+. +.- .-..-
T Consensus 428 ~g~~~Ggg~~am~~~~~~~d~~~awp~a~i~-------Vmgpegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~y~~~~~ 500 (548)
T 2bzr_A 428 TRKAYGGAYCVMGSKDMGCDVNLAWPTAQIA-------VMGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQQEYEDTLV 500 (548)
T ss_dssp EEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTCCC----------CHHHHHHHHHHHHHHHS
T ss_pred eCCcchHHHHHhccccCCCCEEEEcCCCEEE-------ecCHHHHHHHHhhhHHhhhhcccccHHHHHHHHHHHHHHhhC
Confidence 9999998875443 38999998888776 3333444333332 2211 0 1111 111 00123
Q ss_pred CHHHHHHcCCcceecCC
Q psy503 203 DSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 203 sa~eAl~~Glv~~vv~~ 219 (333)
++..+.+.|+||.|+++
T Consensus 501 ~p~~~a~~g~iD~II~p 517 (548)
T 2bzr_A 501 NPYVAAERGYVGAVIPP 517 (548)
T ss_dssp BSHHHHHTTSSSEECCG
T ss_pred CHHHHHhcCCCceeeCH
Confidence 55779999999999996
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.024 Score=56.19 Aligned_cols=150 Identities=17% Similarity=0.242 Sum_probs=95.8
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhc
Q psy503 51 LCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLES 129 (333)
Q Consensus 51 Itln~p~-~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~ 129 (333)
|-=|+|. ..-.++++......+.++..++. ++-+|.|.-. ++ |..|.+- +.....+....++..+.+
T Consensus 342 vian~~~~~~G~l~~~~a~Kaarfi~lcd~~-~iPlv~lvDt-pG-f~~G~~~---------E~~Gi~~~gAk~l~a~a~ 409 (531)
T 3n6r_B 342 VVANQPLVLAGCLDIDSSRKAARFVRFCDAF-EIPLLTLIDV-PG-FLPGTSQ---------EYGGVIKHGAKLLYAYGE 409 (531)
T ss_dssp EEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CS-BCCSHHH---------HHTTHHHHHHHHHHHHHH
T ss_pred EEEecccccCCCCCHHHHHHHHHHHHHhhcc-CCCEEEEeCC-CC-CCCCHHH---------HHhhHHHHHHHHHHHHHh
Confidence 3334443 22579999999999999877754 4667777665 44 4444322 223445667788899999
Q ss_pred CCCcEEEEechhhhHhhHHHHHh----CCEEEEeCCeEEeccccccCccCChhhhhhc-ccccC---HHHHHHHHHcCCC
Q psy503 130 IPVPVLAVLDGSAYGGGLEMALA----CDIRVAASNVRMGLVETKLAIIPGAGGTQRL-PRIVG---IPLAKELIYTGRL 201 (333)
Q Consensus 130 ~~kP~Iaav~G~a~GgG~~Lal~----cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L-~r~iG---~~~a~~llltG~~ 201 (333)
...|+|+.|-|.+.|||..-... +|+++|.++++++ ..++.++...+ .+.+. ....+.--+.-+.
T Consensus 410 a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A~i~-------Vm~pegaa~Il~r~~~~~~~~~~~~~~~y~~~~ 482 (531)
T 3n6r_B 410 ATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVA-------VMGAKGATEIIHRGDLGDPEKIAQHTADYEERF 482 (531)
T ss_dssp CCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHCCTTTTSTTHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCCceEe-------cCCHHHHHHHHhcccccchhHHHHHHHHHHHHh
Confidence 99999999999999988744332 8999988888766 33333333332 22221 1111111111122
Q ss_pred CCHHHHHHcCCcceecCC
Q psy503 202 VDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 202 isa~eAl~~Glv~~vv~~ 219 (333)
-++..|.+.|+||.|+++
T Consensus 483 ~~p~~aa~~~~vD~vIdP 500 (531)
T 3n6r_B 483 ANPFVASERGFVDEVIQP 500 (531)
T ss_dssp SSSHHHHHHTSSSEECCG
T ss_pred cCHHHHHhcCccCcccCH
Confidence 456678889999999997
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.11 Score=52.21 Aligned_cols=142 Identities=11% Similarity=0.150 Sum_probs=95.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 59 ~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
.-.++++-.....+.++..++ .++-+|.|.-. ++ |..|.+ .+.....+....++..+.++..|+|+.|
T Consensus 384 ~G~l~~~~a~Kaarfi~~c~~-~~iPlv~lvDt-pG-f~~G~~---------~E~~Gi~~~gA~~~~a~a~a~vP~itvI 451 (587)
T 1pix_A 384 GGKLYRQGLVKMNEFVTLCAR-DRLPIVWIQDT-TG-IDVGND---------AEKAELLGLGQSLIYSIQTSHIPQFEIT 451 (587)
T ss_dssp TTEECHHHHHHHHHHHHHHHH-TTCCEEEEECC-CE-ECCSHH---------HHHTTHHHHHHHHHHHHHTCCCCEEEEE
T ss_pred CCCcCHHHHHHHHHHHHHhhc-CCCCeEEEecC-CC-CCCcHH---------HHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 356899999999999987665 45677777776 44 655542 2233456677889999999999999999
Q ss_pred chhhhHhhHHHHHh-----C--CEEEEeCCeEEeccccccCccCChhhhhhcccc-cCH---------HHH--HH-HHH-
Q psy503 139 DGSAYGGGLEMALA-----C--DIRVAASNVRMGLVETKLAIIPGAGGTQRLPRI-VGI---------PLA--KE-LIY- 197 (333)
Q Consensus 139 ~G~a~GgG~~Lal~-----c--D~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~-iG~---------~~a--~~-lll- 197 (333)
-|.+.|||. ++++ . |++++.+++.++ ...+.|....+-+. +-. ..+ +. +.-
T Consensus 452 ~g~~~Ggg~-~am~~~~~~~~~d~~~a~p~A~~~-------Vm~pegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~~~~ 523 (587)
T 1pix_A 452 LRKGTAAAH-YVLGGPQGNDTNAFSIGTAATEIA-------VMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQA 523 (587)
T ss_dssp CSEEETTHH-HHTTCTTCTTTEEEEEECTTCEEE-------SSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred cCCCccHHH-HHhcCcccCcccceeeeccCCeEe-------cCCHHHHHHHHHhhhhhhhhhcCCChHHHHHHHHHHHHH
Confidence 999998874 4554 4 998888888776 33334443333221 100 000 00 100
Q ss_pred cCCCCCHHHHHHcCCcceecCCC
Q psy503 198 TGRLVDSTEAKSIGLVNTLTPQN 220 (333)
Q Consensus 198 tG~~isa~eAl~~Glv~~vv~~~ 220 (333)
.-+..++..|.+.|+||.|+++.
T Consensus 524 y~~~~~p~~aa~~g~iD~VI~p~ 546 (587)
T 1pix_A 524 FYTKSRPKVCAELGLVDEIVDMN 546 (587)
T ss_dssp HHHTTSHHHHHHHTSSSEECCTT
T ss_pred HHHhCCHHHHHhcCCCccccCHH
Confidence 01247899999999999999973
|
| >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.02 Score=58.68 Aligned_cols=79 Identities=13% Similarity=0.113 Sum_probs=53.4
Q ss_pred CCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCC--CHHH-
Q psy503 130 IPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV--DSTE- 206 (333)
Q Consensus 130 ~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~i--sa~e- 206 (333)
...|+|+.|.|+|.|||..+...||++|+.+++.+.+. |+..... .+|+.+ +.++
T Consensus 245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~iflt--------------------GP~vIk~--~tGeeV~~s~eeL 302 (758)
T 3k8x_A 245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILT--------------------GAPAINK--MLGREVYTSNLQL 302 (758)
T ss_dssp TTSCEEEEECSCEETHHHHHHHHTCEEEEETTCCEESS--------------------CHHHHHH--HHTSCCCSCTHHH
T ss_pred cCCCEEEEEccCCchHHHHHHhhCCEEEEECCceEEEe--------------------CHHHHHH--HhCCccccCchhc
Confidence 46899999999999999999999999999988643311 1111111 256655 4443
Q ss_pred -----HHHcCCcceecCCCCChhHHHHHHHHH
Q psy503 207 -----AKSIGLVNTLTPQNPNQNAAYLASLRI 233 (333)
Q Consensus 207 -----Al~~Glv~~vv~~~~~~~~l~~~a~~~ 233 (333)
....|++|.++++ ..+.++.++++
T Consensus 303 GGA~vh~~sGvad~va~d---d~eal~~ir~l 331 (758)
T 3k8x_A 303 GGTQIMYNNGVSHLTAVD---DLAGVEKIVEW 331 (758)
T ss_dssp HSHHHHTTTTSSSEEESS---HHHHHHHHHHH
T ss_pred chhhHHHhcCCeeEEecC---HHHHHHHHHHH
Confidence 2368999999996 33444444433
|
| >2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.043 Score=56.66 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=54.2
Q ss_pred CCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCC--C----
Q psy503 130 IPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV--D---- 203 (333)
Q Consensus 130 ~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~i--s---- 203 (333)
...|+|+.|.|+|.|||+.++..||++|+.+++.+.+.. ...+.. .+|+.+ +
T Consensus 258 ~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a~i~ltG-----------p~vi~~-----------~~Ge~vy~s~e~L 315 (793)
T 2x24_A 258 DEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHIILTG-----------ATALNK-----------VLGRDVYTSNNQL 315 (793)
T ss_dssp HHSCEEEEECSEEETHHHHHHHHTCCEEEETTCEEESSC-----------HHHHHH-----------HHSSCCCSCHHHH
T ss_pred CCCCEEEEEecCCchHHHHHHhhCCeEEEeccccEEecC-----------HHHHHH-----------hcCCcccCChhhh
Confidence 368999999999999999999999999999986654211 011111 234444 3
Q ss_pred --HHHHHHcCCcceecCCCCChhHHHHHHHHHH
Q psy503 204 --STEAKSIGLVNTLTPQNPNQNAAYLASLRIA 234 (333)
Q Consensus 204 --a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a 234 (333)
++-....|++|.++++ ..+..+.+++|.
T Consensus 316 GGa~v~~~~Gv~d~vv~d---d~ea~~~ir~~L 345 (793)
T 2x24_A 316 GGVQIMHHNGVSHVTVPD---DFEGVCTILEWL 345 (793)
T ss_dssp HSHHHHTTTTSCSEEESS---HHHHHHHHHHHH
T ss_pred ccHHHHHhcCceEEEeCC---HHHHHHHHHHHH
Confidence 2225679999999996 344445444443
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B | Back alignment and structure |
|---|
Probab=95.32 E-value=0.33 Score=48.27 Aligned_cols=142 Identities=15% Similarity=0.142 Sum_probs=90.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec
Q psy503 60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (333)
Q Consensus 60 Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~ 139 (333)
-.++++......+.++..++. ++-+|.|.-. ++ |..|.+- +.....+...+++..+.+...|+|+.|-
T Consensus 366 G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDt-pG-f~~G~~~---------E~~Gi~~~gAk~~~a~~~a~vP~itvi~ 433 (555)
T 3u9r_B 366 GILFAEAAQKGAHFIELACQR-GIPLLFLQNI-TG-FMVGQKY---------EAGGIAKHGAKLVTAVACARVPKFTVLI 433 (555)
T ss_dssp SSBCHHHHHHHHHHHHHHHHH-TCCEEEEEEE-CC-BCCSHHH---------HHTTHHHHHHHHHHHHHHCCSCEEEEEE
T ss_pred CccCHHHHHHHHHHHHHHhcC-CCCEEEEecC-cC-CCCCHHH---------HHHHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 679999999999999988754 4667777776 44 5555332 2233456677888899999999999999
Q ss_pred hhhhHhhHHHHH----hCCEEEEeCCeEEeccccccCccCChhhhhhcc---cc--------cCHH--HHH-HHH--HcC
Q psy503 140 GSAYGGGLEMAL----ACDIRVAASNVRMGLVETKLAIIPGAGGTQRLP---RI--------VGIP--LAK-ELI--YTG 199 (333)
Q Consensus 140 G~a~GgG~~Lal----~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~---r~--------iG~~--~a~-~ll--ltG 199 (333)
|.+.|||..-.+ .+|++++.+++.++. ..+.+....|- +. .... .+. +.+ ..-
T Consensus 434 g~~~Ggg~~am~~~~~~~d~~~a~p~A~i~V-------mgpegaa~il~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~y~ 506 (555)
T 3u9r_B 434 GGSFGAGNYGMCGRAYDPRFLWMWPNARIGV-------MGGEQAAGVLAQVKREQAERAGQQLGVEEEAKIKAPILEQYE 506 (555)
T ss_dssp EEEETTHHHHTTCGGGCCSEEEECTTCEEES-------SCHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCccchhhHhhcCccCCCCeEEEcCCcEEEc-------CCHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHH
Confidence 998887654322 379999988887773 23333333222 10 0110 000 000 001
Q ss_pred CCCCHHHHHHcCCcceecCCC
Q psy503 200 RLVDSTEAKSIGLVNTLTPQN 220 (333)
Q Consensus 200 ~~isa~eAl~~Glv~~vv~~~ 220 (333)
+..++-.|-..|++|.|+++.
T Consensus 507 ~~~~p~~aa~r~~vD~vIdP~ 527 (555)
T 3u9r_B 507 HQGHPYYSSARLWDDGVIDPA 527 (555)
T ss_dssp HHHSHHHHHHTTSSSCBCCGG
T ss_pred HhCCHHHHhhccccCcccChH
Confidence 123666777889999999973
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.23 Score=49.69 Aligned_cols=140 Identities=12% Similarity=0.162 Sum_probs=91.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec
Q psy503 60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (333)
Q Consensus 60 Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~ 139 (333)
..++++-.....+.++..++. ++-+|.|.-. ++ |..|.+- +.....+....++..+.++..|+|+.|-
T Consensus 387 G~l~~~~a~Kaarfi~lcd~f-~iPlv~lvDt-pG-f~~G~~a---------E~~Gi~~~gAk~l~a~a~a~VP~itvI~ 454 (588)
T 3gf3_A 387 GKLYRQGLIKMNEFVTLCARD-RIPLIWLQDT-TG-IDVGDEA---------EKAELLGLGQSLIYSIENSKLPSLEITI 454 (588)
T ss_dssp TEECHHHHHHHHHHHHHHHHT-TCCEEEEECC-CE-ECCSHHH---------HHTTHHHHHHHHHHHHHHHCSCEEEEES
T ss_pred CCcCHHHHHHHHHHHHHhhhc-CCCeEEEecC-CC-CCCCHHH---------HHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 468999999999999988764 5677777766 44 6656432 2334566777888999999999999999
Q ss_pred hhhhHhhHHHHHhC-------CEEEEeCCeEEeccccccCccCChhhhhhcc-ccc------CH------HHHHHHH-Hc
Q psy503 140 GSAYGGGLEMALAC-------DIRVAASNVRMGLVETKLAIIPGAGGTQRLP-RIV------GI------PLAKELI-YT 198 (333)
Q Consensus 140 G~a~GgG~~Lal~c-------D~rias~~a~f~~pe~~~Gl~p~~g~~~~L~-r~i------G~------~~a~~ll-lt 198 (333)
|.+.|||. +++++ |+++|.++++++ ..++.|+...+- +.+ |. ....++. .-
T Consensus 455 g~~~Ggg~-~am~~~~~~~~~~~~~awp~A~~s-------Vm~pEgaa~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 526 (588)
T 3gf3_A 455 RKASAAAH-YVLGGPQGNNTNVFSIGTGACEYY-------VMPGETAANAMYSRKLVKAKKAGEDLQPIIGKMNDMIQMY 526 (588)
T ss_dssp SEEETTHH-HHTTCTTCTTTEEEEEECTTCEEE-------SSCHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHH
T ss_pred CCccHHHH-HHhcccccCCccceEEECCCceEE-------eCCHHHHHHHHhhhHHhhhhccccccchHHHHHHHHHHHH
Confidence 99988765 44443 377777777766 333344433332 211 10 0000100 00
Q ss_pred CCCCCHHHHHHcCCcceecCC
Q psy503 199 GRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 199 G~~isa~eAl~~Glv~~vv~~ 219 (333)
-+..++--|.+.|+||.|+++
T Consensus 527 ~~~~~p~~aA~r~~vD~VIdP 547 (588)
T 3gf3_A 527 TDKSRPKYCTEKGMVDEIVDM 547 (588)
T ss_dssp HHTTSHHHHHHTTSSSEECCG
T ss_pred HHhCCHHHHHhcCCCCeeeCH
Confidence 123588889999999999997
|
| >2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* | Back alignment and structure |
|---|
Probab=91.63 E-value=2 Score=44.33 Aligned_cols=94 Identities=15% Similarity=0.195 Sum_probs=67.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe-
Q psy503 60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL- 138 (333)
Q Consensus 60 Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav- 138 (333)
-.++++-.....+.+..+++ .++-+|.|.-. ++ |..|.+ ++.....+....++..+.++..|+|+.|
T Consensus 462 G~l~~~~a~KaarfI~~cd~-f~iPlv~LvDt-pG-f~~G~~---------aE~~Gi~~~gAkll~A~a~a~VP~itvI~ 529 (793)
T 2x24_A 462 QVWFPDSAYKTAQAIKDFNR-EKLPLMIFANW-RG-FSGGMK---------DMYDQVLKFGAYIVDGLRKYRQPVLIYIP 529 (793)
T ss_dssp TEECHHHHHHHHHHHHHHHT-TTCCEEEECCB-CE-ECCSHH---------HHHTTHHHHHHHHHHHHHTCCSCEEEEEC
T ss_pred CcccHHHHHHHHHHHHHhcc-CCCCEEEEecC-CC-CCCCHH---------HHHhhHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 36999999999999999975 45677777666 44 665542 2233456677889999999999999999
Q ss_pred -chhhhHhhHHHH---HhCCE--EEEeCCeEEe
Q psy503 139 -DGSAYGGGLEMA---LACDI--RVAASNVRMG 165 (333)
Q Consensus 139 -~G~a~GgG~~La---l~cD~--rias~~a~f~ 165 (333)
.|.+.||+..++ +..|+ ++|.++++++
T Consensus 530 r~Ge~~GGa~~~~~~~~~~d~~ev~Awp~A~~~ 562 (793)
T 2x24_A 530 PYAEVRGGSWAVMDTSINPLCIEMYADRESRAS 562 (793)
T ss_dssp TTCEEEHHHHHTTCGGGSTTTEEEEEETTCEEE
T ss_pred cCCcccchhHHhhhcccCccHHHHhhhccCEEE
Confidence 888877665332 24565 5666666655
|
| >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A | Back alignment and structure |
|---|
Probab=83.91 E-value=1.7 Score=44.62 Aligned_cols=94 Identities=16% Similarity=0.282 Sum_probs=69.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec
Q psy503 60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (333)
Q Consensus 60 Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~ 139 (333)
..++++......+.+...++..++-+|.|.-. ++ |..|.+- +.....+....++..+.++..|+|+.|-
T Consensus 447 G~l~pe~a~KaArfI~lcd~~f~iPLv~LvDt-pG-f~~G~~a---------E~~Gi~k~gAkll~A~a~a~VP~itVI~ 515 (758)
T 3k8x_A 447 QVWHPNSAFKTAQAINDFNNGEQLPMMILANW-RG-FSGGQRD---------MFNEVLKYGSFIVDALVDYKQPIIIYIP 515 (758)
T ss_dssp TEECHHHHHHHHHHHHHHHHTSCCCEEECCCC-CE-ECCSHHH---------HHTTHHHHHHHHHHHHHTCCSCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHhhhccCCCEEEEecC-CC-CCCCHHH---------HHccHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 46899999999999998887456677777665 43 6666432 2334566778899999999999999997
Q ss_pred --hhhhHhhHHHHHh----CCE--EEEeCCeEEe
Q psy503 140 --GSAYGGGLEMALA----CDI--RVAASNVRMG 165 (333)
Q Consensus 140 --G~a~GgG~~Lal~----cD~--rias~~a~f~ 165 (333)
|.+.||++ ++++ +|+ ++|.+++.++
T Consensus 516 RkGe~~GGA~-~am~~~~~ad~~~v~Awp~A~is 548 (758)
T 3k8x_A 516 PTGELRGGSW-VVVDPTINADQMEMYADVNARAG 548 (758)
T ss_dssp TTCEEETHHH-HTTCGGGSTTTEEEEEETTCEEE
T ss_pred cCCccchHHH-HHhCcccCCCHHHHhcCCCCEEE
Confidence 88888776 5554 454 6666666555
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 333 | ||||
| d1mj3a_ | 260 | c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat | 9e-49 | |
| d1hzda_ | 266 | c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T | 5e-34 | |
| d1uiya_ | 253 | c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The | 1e-29 | |
| d1dcia_ | 275 | c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2 | 2e-24 | |
| d1q52a_ | 297 | c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter | 3e-21 | |
| d1pjha_ | 266 | c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2 | 2e-18 | |
| d2f6qa1 | 245 | c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-C | 3e-18 | |
| d1ef8a_ | 261 | c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Esc | 1e-17 | |
| d1nzya_ | 269 | c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Ps | 1e-16 | |
| d1szoa_ | 249 | c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus | 1e-14 | |
| d1wdka4 | 310 | c.14.1.3 (A:1-310) Fatty oxidation complex alpha s | 3e-13 | |
| d1wz8a1 | 263 | c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TT | 9e-13 | |
| d2a7ka1 | 230 | c.14.1.3 (A:1-230) Carbapenem biosynthes protein C | 7e-12 | |
| d2fw2a1 | 258 | c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Hum | 2e-10 | |
| d1sg4a1 | 249 | c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-d | 7e-09 |
| >d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 162 bits (410), Expect = 9e-49
Identities = 86/296 (29%), Positives = 123/296 (41%), Gaps = 42/296 (14%)
Query: 37 IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVF 96
II + + + +NRP+A NAL L+EE+ A+E D V ++L K
Sbjct: 6 IITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFA 65
Query: 97 CAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIR 156
+ + N + + I PV+A ++G A GGG E+A+ CDI
Sbjct: 66 AGADIKEMQ---NRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDII 122
Query: 157 VAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTL 216
A + G E L IPGAGGTQRL R VG LA E++ TG + + +AK GLV+ +
Sbjct: 123 YAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKI 182
Query: 217 TPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQG 276
P A + AE IA+N I V MAK S++
Sbjct: 183 FPVETLVEEAI----QCAEKIANNSKIIVAMAKESVN----------------------- 215
Query: 277 SKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
E E G + E + T DR EG+ +F+ K K +K
Sbjct: 216 ------AAFEMTLTE------GNKLEKKLFYSTFATDDRREGMSAFVEKRKANFKD 259
|
| >d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: AUH protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 123 bits (309), Expect = 5e-34
Identities = 123/289 (42%), Positives = 179/289 (61%), Gaps = 35/289 (12%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
E GIV L +NR +N+L+ L++ + AV+A++ D++VR +++RS V +FCAGADLK
Sbjct: 12 ENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLK 71
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
R ++ ++ FVS +R + + ++PVP +A +DG A GGGLE+ALACDIRVAAS+ +
Sbjct: 72 ERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAK 131
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
MGLVETKLAIIPG GGTQRLPR +G+ LAKELI++ R++D EAK++GL++ + QN
Sbjct: 132 MGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEG 191
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283
+AAY +L +A + GP+A+R+AK +I+ +
Sbjct: 192 DAAYRKALDLAREFLPQGPVAMRVAKLAIN-----------------------------Q 222
Query: 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
G E G+ E CY + I T+DR+EGL +F K P YKG
Sbjct: 223 GMEVDLVT------GLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYKG 265
|
| >d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Thermus thermophilus [TaxId: 274]
Score = 111 bits (278), Expect = 1e-29
Identities = 72/289 (24%), Positives = 117/289 (40%), Gaps = 42/289 (14%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
E+ + + +N P+ RN L+ + +L A++ + D VR V+L K
Sbjct: 5 EKGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAF 64
Query: 104 HRLTLNEDQIRSFVSTL--RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
++ +L + ++ + P P +A ++G A GG +ALACD+ V
Sbjct: 65 LERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEE 124
Query: 162 VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNP 221
R+G E K A + L R VG AK+L+ TGRLV++ EAK++GLVN + P
Sbjct: 125 ARLGYTEVK-IGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGK 183
Query: 222 NQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281
A +AE++A N P ++R+ K + G D
Sbjct: 184 ALEEAK----ALAEEVAKNAPTSLRLTKELLLA-LPGMGLED------------------ 220
Query: 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVY 330
G + V T D EG+++F K P +
Sbjct: 221 ----------------GFRLAALANAWVRETGDLAEGIRAFFEKRPPRF 253
|
| >d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 98.7 bits (244), Expect = 2e-24
Identities = 50/294 (17%), Positives = 108/294 (36%), Gaps = 47/294 (15%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ ++ + +NRP+ RNA+N E++ + I D + R V++ K +
Sbjct: 11 QKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDM 70
Query: 105 RLTLNEDQIRSFVSTLRYMTCQ----------LESIPVPVLAVLDGSAYGGGLEMALACD 154
+ + Y+ +E P PV+A + G GGG+++ ACD
Sbjct: 71 ASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACD 130
Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVN 214
IR + + E + + G QRLP+++G + A
Sbjct: 131 IRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNR--SLVNELTFTARKMMADEALDSG 188
Query: 215 TLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDG 274
++ P+++ A+ +A DI+ P+AV+ +K ++
Sbjct: 189 LVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLI--------------------- 227
Query: 275 QGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKP 328
++ E +++ +++TQD ++ +++ + K
Sbjct: 228 --------YSRDHSVDE------SLDYMATWNMSMLQTQDIIKSVQAAMEKKDS 267
|
| >d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Naphthoate synthase MenB species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 90.2 bits (222), Expect = 3e-21
Identities = 64/315 (20%), Positives = 104/315 (33%), Gaps = 59/315 (18%)
Query: 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVK 93
LT I YH + V + NRP+ RNA V+E+ ++ R +V VLL
Sbjct: 17 LTDITYHRHVDD-ATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGP 75
Query: 94 DVFCAGADLKHRLTLNE-----------------DQIRSFVSTLRYMTCQLESIPVPVLA 136
G D R+ + + + +P V+
Sbjct: 76 SPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVIC 135
Query: 137 VLDGSAYGGGLEMALACDIRVAASN-VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKEL 195
+++G A GGG + + CD+ +A+ R + + G G+ L R VG A+E+
Sbjct: 136 LVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREI 195
Query: 196 IYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGP 255
+ GR + + +G VN + + + A +I P A RM K +
Sbjct: 196 FFLGRTYTAEQMHQMGAVNAVAEHAELETVGL----QWAAEINAKSPQAQRMLKFAF--- 248
Query: 256 GRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDR 315
N G + G T +
Sbjct: 249 ---------------------------------NLLDDGLVGQQLFAGEATRLAYMTDEA 275
Query: 316 VEGLKSFLGKYKPVY 330
VEG +FL K P +
Sbjct: 276 VEGRDAFLQKRPPDW 290
|
| >d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 81.6 bits (200), Expect = 2e-18
Identities = 34/224 (15%), Positives = 68/224 (30%), Gaps = 13/224 (5%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCA-------- 98
+ + P NAL + +E + +V +++S +
Sbjct: 14 PFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAK 73
Query: 99 --GADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIR 156
G D + + +FV+ Y+T ++ L+G A G + CDI
Sbjct: 74 AQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIV 133
Query: 157 VA-ASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNT 215
+ V + L +I G T LP G E + + G ++
Sbjct: 134 YSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISK 193
Query: 216 LTPQNPNQNAAYLASL--RIAEDIAHNGPIAVRMAKRSIDGPGR 257
+ A+ A + + E + + K+ +
Sbjct: 194 NFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSNHI 237
|
| >d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.6 bits (197), Expect = 3e-18
Identities = 47/210 (22%), Positives = 89/210 (42%), Gaps = 10/210 (4%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GI ++ NRP+ +NA+N + EI+ A++A D+ + V + D + +G DL +
Sbjct: 12 GITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSIITV--LTGNGDYYSSGNDLTNFT 69
Query: 107 TLNEDQIRSFVSTLRYMTCQL----ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
+ + + + P P++AV++G A G + + D A+
Sbjct: 70 DIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRA 129
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPN 222
+ L P + P+I+ A E++ G+ + + EA + GLV + P +
Sbjct: 130 TFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTF 189
Query: 223 QNAAYLASLRIAEDIAHNGPIAVRMAKRSI 252
Q + A P A+R++K I
Sbjct: 190 QKEV----WTRLKAFAKLPPNALRISKEVI 215
|
| >d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Methylmalonyl CoA decarboxylase species: Escherichia coli [TaxId: 562]
Score = 78.7 bits (192), Expect = 1e-17
Identities = 58/286 (20%), Positives = 115/286 (40%), Gaps = 38/286 (13%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
+ + N + NAL+ +++++ A+ + E+RC++LR+ + H L
Sbjct: 13 KVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRP-EIRCIILRAPSGSKVFSAGHDIHEL 71
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
S+ LR +T ++ P P++++++GS +GG EM ++ D+ +AAS +
Sbjct: 72 PSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSM 131
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
L + G L R G + KELI+T + + A ++G++N + ++
Sbjct: 132 TPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELEDFT 191
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTE 286
++A I+ P+A+ + K + G +
Sbjct: 192 L----QMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDE--------------------- 226
Query: 287 NQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
E V ++D EG+ +FL K KP + G
Sbjct: 227 ------------FERIQGMRRAVYDSEDYQEGMNAFLEKRKPNFVG 260
|
| >d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 4-Chlorobenzoyl-CoA dehalogenase species: Pseudomonas sp., strain CBS-3 [TaxId: 306]
Score = 76.4 bits (186), Expect = 1e-16
Identities = 65/287 (22%), Positives = 111/287 (38%), Gaps = 45/287 (15%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
G+ E+ + P+ RNAL+ ++E+ A+ D+ V V++ + +D FCAG L+
Sbjct: 12 GVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMI-TGAEDAFCAGFYLREIP 70
Query: 107 TLNED-----QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
R M ++ + PVLA ++G A GGGL ++LA D+ + A +
Sbjct: 71 LDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADS 130
Query: 162 VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNP 221
+ + I + L RIVG+ A EL+ T R + EAK GLV+ + P++
Sbjct: 131 AKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDE 190
Query: 222 NQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281
+ A+ ++A ++A MAK
Sbjct: 191 FREVAW----KVARELAAAPTHLQVMAKERFH---------------------------- 218
Query: 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKP 328
G E E+E + + L FL ++
Sbjct: 219 -AGWMQPVEE------CTEFEIQNVIASVTHPHFMPCLTRFLDGHRA 258
|
| >d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 6-oxo camphor hydrolase species: Rhodococcus erythropolis [TaxId: 1833]
Score = 70.1 bits (170), Expect = 1e-14
Identities = 40/206 (19%), Positives = 72/206 (34%), Gaps = 5/206 (2%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
G++ + ++ +T +E+ I D E + V+L L
Sbjct: 22 GVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNL 81
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
D R + SI VPV+A ++G ++ + A S
Sbjct: 82 GTPHDWDEIIFEGQRLLNNL-LSIEVPVIAAVNGPVTNAPEIPVMSDIVLAAESATFQDG 140
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
I+PG G P ++G + + TG+ +D+ A G VN + + A
Sbjct: 141 PHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQELLPRA 200
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSI 252
+A IA +A R A++ +
Sbjct: 201 ----WELARGIAEKPLLARRYARKVL 222
|
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Score = 67.0 bits (162), Expect = 3e-13
Identities = 75/284 (26%), Positives = 129/284 (45%), Gaps = 7/284 (2%)
Query: 47 GIVELCMN-RPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAG---ADL 102
GIVEL + + ++ N N + E+ AV+AI+ D V+ V++ S KDVF G +
Sbjct: 16 GIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEF 74
Query: 103 KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
L + ++ + + E + VP +A ++G A GGGLEM LA D RV A +
Sbjct: 75 VENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSA 134
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPN 222
++GL E KL I PG GGT RLPR++G+ A E I +G+ + +A + V+ + +
Sbjct: 135 KIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTADKL 194
Query: 223 QNAAYLASLRIAE-DIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281
AA R ++ + ++ K ++ + + + + E
Sbjct: 195 GAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVAGQAGPNYPAPVE 254
Query: 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGK 325
+ T + GR +E E + ++ +T + FL
Sbjct: 255 AIKTIQKAAN-FGRDKALEVEAAGFAKLAKTSASNCLIGLFLND 297
|
| >d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Probable enoyl-CoA hydratase TTHA0218 species: Thermus thermophilus [TaxId: 274]
Score = 65.3 bits (157), Expect = 9e-13
Identities = 58/287 (20%), Positives = 95/287 (33%), Gaps = 42/287 (14%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCA-GADLK 103
RPG++E+ R + NA+ L + + E VR VLLR L
Sbjct: 17 RPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLI 75
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
+ + + + R + + P PV+A ++ A G GL +ALA DI V R
Sbjct: 76 EEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTR 135
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
+ +L + G P +VG+ AK + + EA+ +GLV
Sbjct: 136 LLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVEDEKVY 195
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283
A +AE +A A+ K ++
Sbjct: 196 EKAL----EVAERLAQGPKEALHHTKHAL------------------------------- 220
Query: 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVY 330
N ++ E ++ EGLK+ K P +
Sbjct: 221 -----NHWYRSFLPHFELSLALEFLGFSGKELEEGLKALKEKRPPEF 262
|
| >d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Carbapenem biosynthes protein CarB species: Pectobacterium carotovorum [TaxId: 554]
Score = 62.2 bits (149), Expect = 7e-12
Identities = 34/207 (16%), Positives = 66/207 (31%), Gaps = 4/207 (1%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
+ + ++ P N + TL + A+ D+ VR V++ + F AG D
Sbjct: 9 EVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVK 68
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
L+ + Q G + ++ +
Sbjct: 69 QLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFV 128
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
+ I + G L G +E+IY + +D+ LVN + + +AA
Sbjct: 129 MPELKHGIGCSVGAAILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALLDAA 188
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSID 253
+ A +A A KR+++
Sbjct: 189 ----ITQAHVMASYPASAFINTKRAVN 211
|
| >d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Chromodomain protein CDY2A species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.0 bits (138), Expect = 2e-10
Identities = 43/291 (14%), Positives = 94/291 (32%), Gaps = 44/291 (15%)
Query: 44 ERPGIVELCMN-RPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGA-- 100
+ G ++ ++ R +NALN +++E++ A+ + D + + VL + C
Sbjct: 8 KEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAAD-DSKLVLFSAAGSVFCCGLDFG 66
Query: 101 -DLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
++H V T++ P++ ++G A G G + CD+ A
Sbjct: 67 YFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWAN 126
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219
T P + P+++G A E++ GR + + EA + GLV+ +
Sbjct: 127 EKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLT 186
Query: 220 NPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKG 279
+++A I + K +
Sbjct: 187 GTFTQEVM----IQIKELASYNAIVLEECKALV--------------------------- 215
Query: 280 GESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVY 330
N + E E ++ + +E + ++ +
Sbjct: 216 -------RCNIK-LELEQANERECEVLRKIWSSAQGIESMLKYVENKIDEF 258
|
| >d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Score = 53.3 bits (126), Expect = 7e-09
Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 7/209 (3%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
G+ + P N+L+ + E++ ++E + D+ R V+L S VF AG DL
Sbjct: 13 GVAVMKFKNP-PVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMC 71
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM-- 164
+ + ++ + +L + +++ ++G+ GG +AL CD R+ A N R
Sbjct: 72 GRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCI 131
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
GL ET+L II L +G A+ + G L EA +G+V+ + P+ Q+
Sbjct: 132 GLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQS 191
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSID 253
A L A ++ K +
Sbjct: 192 TA----LSAIAQWMAIPDHARQLTKAMMR 216
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 333 | |||
| d1hzda_ | 266 | AUH protein {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1mj3a_ | 260 | Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve | 100.0 | |
| d1nzya_ | 269 | 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., | 100.0 | |
| d1wz8a1 | 263 | Probable enoyl-CoA hydratase TTHA0218 {Thermus the | 100.0 | |
| d2fw2a1 | 258 | Chromodomain protein CDY2A {Human (Homo sapiens) [ | 100.0 | |
| d1ef8a_ | 261 | Methylmalonyl CoA decarboxylase {Escherichia coli | 100.0 | |
| d1uiya_ | 253 | Enoyl-CoA hydratase (crotonase) {Thermus thermophi | 100.0 | |
| d1dcia_ | 275 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 100.0 | |
| d1q52a_ | 297 | Naphthoate synthase MenB {Mycobacterium tuberculos | 100.0 | |
| d2f6qa1 | 245 | Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human ( | 100.0 | |
| d1wdka4 | 310 | Fatty oxidation complex alpha subunit, N-terminal | 100.0 | |
| d1sg4a1 | 249 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 100.0 | |
| d2a7ka1 | 230 | Carbapenem biosynthes protein CarB {Pectobacterium | 100.0 | |
| d1pjha_ | 266 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 100.0 | |
| d1szoa_ | 249 | 6-oxo camphor hydrolase {Rhodococcus erythropolis | 100.0 | |
| d2cbya1 | 179 | Clp protease, ClpP subunit {Mycobacterium tubercul | 98.26 | |
| d1yg6a1 | 183 | Clp protease, ClpP subunit {Escherichia coli [TaxI | 98.26 | |
| d1y7oa1 | 192 | Clp protease, ClpP subunit {Streptococcus pneumoni | 98.14 | |
| d2f6ia1 | 190 | Clp protease, ClpP subunit {Plasmodium falciparum | 98.13 | |
| d1tg6a1 | 193 | Clp protease, ClpP subunit {Human (Homo sapiens), | 97.94 | |
| d2f9ya1 | 316 | Acetyl-coenzyme A carboxylase carboxyl transferase | 97.91 | |
| d1on3a1 | 253 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 97.9 | |
| d1xnya1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.71 | |
| d1vrga1 | 251 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.63 | |
| d2a7sa1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.56 | |
| d2f9yb1 | 263 | Acetyl-coenzyme A carboxylase carboxyl transferase | 97.51 | |
| d1pixa2 | 287 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 97.43 | |
| d2a7sa2 | 271 | Propionyl-CoA carboxylase complex B subunit, PccB | 96.94 | |
| d1vrga2 | 264 | Propionyl-CoA carboxylase complex B subunit, PccB | 96.92 | |
| d1xnya2 | 263 | Propionyl-CoA carboxylase complex B subunit, PccB | 96.58 | |
| d1on3a2 | 264 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 96.37 | |
| d1uyra1 | 333 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 96.3 | |
| d1pixa3 | 299 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 94.4 | |
| d1uyra2 | 404 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 93.57 |
| >d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: AUH protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.3e-60 Score=435.83 Aligned_cols=264 Identities=47% Similarity=0.799 Sum_probs=248.8
Q ss_pred ceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHH
Q psy503 35 TQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIR 114 (333)
Q Consensus 35 ~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~ 114 (333)
++....++++++||++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.++++||+|.|++.+.........
T Consensus 3 ~~~~~~l~~~~~gI~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~~~~~~ 82 (266)
T d1hzda_ 3 ELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVG 82 (266)
T ss_dssp SEEEEECCGGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHH
T ss_pred cceEEEEEEecCCEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccccchhhh
Confidence 44555566778899999999999999999999999999999999999999999999967899999999999887777777
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHH
Q psy503 115 SFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKE 194 (333)
Q Consensus 115 ~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~ 194 (333)
.+...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++
T Consensus 83 ~~~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~~~a~~ 162 (266)
T d1hzda_ 83 PFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKE 162 (266)
T ss_dssp HHHHHHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHH
T ss_pred hhhhHHHHHHHHHhcCCcccccccccccccccceeccccceeeecCCcEEeecccceeecCCccceeeehhhhHHHHHHh
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCC
Q psy503 195 LIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDG 274 (333)
Q Consensus 195 llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~ 274 (333)
++++|+.++|+||+++||||+|||+++..+++.+.+.++++.++..||.+++.+|++++ ++...
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~a~~~a~~i~~~~p~a~~~~K~~l~---~~~~~------------- 226 (266)
T d1hzda_ 163 LIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAIN---QGMEV------------- 226 (266)
T ss_dssp HHHHTCEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSCHHHHHHHHHHHH---HHHTS-------------
T ss_pred hhccCCccCHHHhhcccccccccChhhhhhHHHHHHHHHHHhcccCChHHHHHHHHHHH---HHhcC-------------
Confidence 99999999999999999999999987766778899999999999999999999999999 77665
Q ss_pred CCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 275 QGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||++||+|||+|+|+|+
T Consensus 227 -------------------~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~Gk 266 (266)
T d1hzda_ 227 -------------------DLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYKGE 266 (266)
T ss_dssp -------------------CHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCCCCCC
T ss_pred -------------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCCCC
Confidence 8999999999999999999999999999999999999996
|
| >d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=7.1e-60 Score=431.43 Aligned_cols=258 Identities=34% Similarity=0.498 Sum_probs=239.4
Q ss_pred ccceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHH
Q psy503 33 KLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ 112 (333)
Q Consensus 33 ~~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~ 112 (333)
.|+++.++...++++|++||||||+++|+||.+|+.+|.++|++++.|+++++|||+|. ++.||+|.|++++.....+.
T Consensus 2 ~~~~i~~e~~g~~~~I~~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~ 80 (260)
T d1mj3a_ 2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGG-EKAFAAGADIKEMQNRTFQD 80 (260)
T ss_dssp CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECC-SSEEECCBCHHHHTTCCHHH
T ss_pred CCeEEEEEEEcCCCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCcceEEEecc-cccccccchhhhhhccchhh
Confidence 47778888665678999999999999999999999999999999999999999999998 89999999999987654332
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHH
Q psy503 113 IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192 (333)
Q Consensus 113 ~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a 192 (333)
.+...+..++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.+++
T Consensus 81 --~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~~~a 158 (260)
T d1mj3a_ 81 --CYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLA 158 (260)
T ss_dssp --HHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHHH
T ss_pred --hhHHHHHHHHHHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHhCHHHH
Confidence 344566778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCC
Q psy503 193 KELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGR 272 (333)
Q Consensus 193 ~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~ 272 (333)
++++++|++|+++||+++|||++|+++ +++.+.+.+++++++..+|.+++.+|++++ .....
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~v~~~----~~~~~~a~~~a~~i~~~~~~a~~~~K~~l~---~~~~~----------- 220 (260)
T d1mj3a_ 159 MEMVLTGDRISAQDAKQAGLVSKIFPV----ETLVEEAIQCAEKIANNSKIIVAMAKESVN---AAFEM----------- 220 (260)
T ss_dssp HHHHHHCCCEEHHHHHHHTSCSEEECT----TTHHHHHHHHHHHHHHSCHHHHHHHHHHHH---GGGSS-----------
T ss_pred HHHHHcCcccCchhhccCCCceeeecc----cccccccccccccccchhhHHHHHHHHHHH---HHHhC-----------
Confidence 999999999999999999999999996 668899999999999999999999999999 77665
Q ss_pred CCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 273 DGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
+++++++.|.+.+..++.++|++||+++|+|||+|+|+|
T Consensus 221 ---------------------~l~~~l~~E~~~~~~~~~s~d~~egi~aFleKR~P~f~~ 259 (260)
T d1mj3a_ 221 ---------------------TLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFKD 259 (260)
T ss_dssp ---------------------CHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCCCC
T ss_pred ---------------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCCC
Confidence 899999999999999999999999999999999999997
|
| >d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 4-Chlorobenzoyl-CoA dehalogenase species: Pseudomonas sp., strain CBS-3 [TaxId: 306]
Probab=100.00 E-value=1e-56 Score=413.16 Aligned_cols=256 Identities=25% Similarity=0.323 Sum_probs=237.2
Q ss_pred cceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCH---
Q psy503 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE--- 110 (333)
Q Consensus 34 ~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~--- 110 (333)
|+++.+++ +++|++||||||+++|++|.+|+.+|.++|+++++|+++++|||+|. ++.||+|+|++++.....
T Consensus 2 y~~i~~~i---~dgVa~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~-g~~F~aG~Dl~~~~~~~~~~~ 77 (269)
T d1nzya_ 2 YEAIGHRV---EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGA-EDAFCAGFYLREIPLDKGVAG 77 (269)
T ss_dssp CSSEEEEE---ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCGGGSCSSSHHHH
T ss_pred CCceEEEE---ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCC-cccccchhhHHHHhhcccccc
Confidence 35577776 68999999999999999999999999999999999999999999999 799999999999865332
Q ss_pred --HHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccC
Q psy503 111 --DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188 (333)
Q Consensus 111 --~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG 188 (333)
+........++.++.++..+||||||+|||+|+|||++|+++|||||++++++|++||.++|++|++|+++++++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig 157 (269)
T d1nzya_ 78 VRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVG 157 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhhhhhcccccccccccccccccccccccC
Confidence 223334456778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCC
Q psy503 189 IPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTH 268 (333)
Q Consensus 189 ~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~ 268 (333)
..++++++++|+.|+|+||+++||||+|+|+ +++.+++.++|++|+..||.+++.+|+.++ +....
T Consensus 158 ~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~------- 223 (269)
T d1nzya_ 158 MRRAMELMLTNRTLYPEEAKDWGLVSRVYPK----DEFREVAWKVARELAAAPTHLQVMAKERFH---AGWMQ------- 223 (269)
T ss_dssp HHHHHHHHHHCCCBCHHHHHHHTSCSCEECH----HHHHHHHHHHHHHHHHSCHHHHHHHHHHHH---HHTTS-------
T ss_pred hhhhhhccccccccchhHHHHcCCccccccc----cccccchhhhhhhhhhhhHHHHHHHHHHHH---HHHcC-------
Confidence 9999999999999999999999999999994 889999999999999999999999999999 77665
Q ss_pred CCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 269 SPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
+++++++.|.+.+..++.++|++|||++|+|||||+|..
T Consensus 224 -------------------------~l~~~~~~e~~~~~~~~~~~~~~e~v~aflekrkp~~~~ 262 (269)
T d1nzya_ 224 -------------------------PVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADRPQ 262 (269)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTTCCS
T ss_pred -------------------------CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHCCCCCCcCC
Confidence 899999999999999999999999999999999999964
|
| >d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Probable enoyl-CoA hydratase TTHA0218 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.5e-57 Score=416.00 Aligned_cols=252 Identities=24% Similarity=0.320 Sum_probs=232.0
Q ss_pred eEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc--CHHHH
Q psy503 36 QIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL--NEDQI 113 (333)
Q Consensus 36 ~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~--~~~~~ 113 (333)
.+.++ .+++||++|+| ||++.|+||.+|+.+|.+++++++.|+++++|||+|. |++||+|.|++++... +.+..
T Consensus 10 ~i~~~--~~~~gV~~itl-rp~~~Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~-g~~FsaG~Dl~~~~~~~~~~~~~ 85 (263)
T d1wz8a1 10 GLAFA--WPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGE-GGVFSAGGSFGLIEEMRASHEAL 85 (263)
T ss_dssp TEEEE--EEETTEEEEEE-CCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEG-GGCCBCCBCHHHHHHHHHCHHHH
T ss_pred eEEEE--EcCCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHhhCCCCeEEEEecc-cccccccchhhhhhhhccccccc
Confidence 34444 34788999999 7999999999999999999999999999999999999 8999999999987643 44556
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHH
Q psy503 114 RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAK 193 (333)
Q Consensus 114 ~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~ 193 (333)
..+...+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..+++
T Consensus 86 ~~~~~~~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~~~a~ 165 (263)
T d1wz8a1 86 LRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAK 165 (263)
T ss_dssp HHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHH
T ss_pred ccchhhhhHHHHHhhhhhcceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 67778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCC
Q psy503 194 ELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRD 273 (333)
Q Consensus 194 ~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~ 273 (333)
+++++|++++|+||+++||||+|||+ +++.+++.++|++|+..||.+++.+|++++ +...
T Consensus 166 ~l~l~g~~i~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~al~~~K~~l~---~~~~------------- 225 (263)
T d1wz8a1 166 YHLLLNEPLTGEEAERLGLVALAVED----EKVYEKALEVAERLAQGPKEALHHTKHALN---HWYR------------- 225 (263)
T ss_dssp HHHHHTCCEEHHHHHHHTSSSEEECG----GGHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHHH-------------
T ss_pred hhcccccccchhHHHhcCCcccccch----hhhhHHHHHHHHHhhccHHHHHHHHHHHHH---HHHh-------------
Confidence 99999999999999999999999995 789999999999999999999999999998 5543
Q ss_pred CCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCC
Q psy503 274 GQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYK 331 (333)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~ 331 (333)
...+.++.|...+..++.++|++||++||+|||+|+|.
T Consensus 226 --------------------~~~~~~~~e~~~~~~~~~s~d~~Egi~Af~eKR~P~f~ 263 (263)
T d1wz8a1 226 --------------------SFLPHFELSLALEFLGFSGKELEEGLKALKEKRPPEFP 263 (263)
T ss_dssp --------------------TTHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCCC
T ss_pred --------------------ChHHHHHHHHHHHHHHccCHHHHHHHHHHhCCCCCCCC
Confidence 33456888999999999999999999999999999994
|
| >d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Chromodomain protein CDY2A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.8e-57 Score=413.68 Aligned_cols=252 Identities=18% Similarity=0.316 Sum_probs=232.4
Q ss_pred ceEEEEeeecCCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC----
Q psy503 35 TQIIYHNSPERPGIVELCMN-RPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN---- 109 (333)
Q Consensus 35 ~~~~~~~~~~~~~v~~Itln-~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~---- 109 (333)
+.+.++. +++|++|++| ||+++|++|.+|+.+|.++|+.++.| ++++|||+|. |++||+|+|++++....
T Consensus 2 ~~i~v~~---~~gi~~i~l~~rp~~~Nals~~~~~el~~al~~~~~d-~~~~vvl~g~-g~~FsaG~Dl~~~~~~~~~~~ 76 (258)
T d2fw2a1 2 RDIVVKK---EDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAAD-DSKLVLFSAA-GSVFCCGLDFGYFVRHLRNDR 76 (258)
T ss_dssp CSEEEEE---ETTEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHS-SCSEEEEEEC-SSCSBCCBCHHHHHHHHHHCH
T ss_pred ceEEEEE---ECCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecC-ccccccccccchhhhcccccc
Confidence 3455554 7899999998 79999999999999999999999987 5699999998 89999999999876432
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCH
Q psy503 110 EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGI 189 (333)
Q Consensus 110 ~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~ 189 (333)
......+.+.+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~ 156 (258)
T d2fw2a1 77 NTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGK 156 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCH
T ss_pred cchhhHHHHHHHHHHHhhhccceeeeeecccccccccccccccccccceecccceeeccccccccccccccccchhhcCc
Confidence 22244667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCC
Q psy503 190 PLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHS 269 (333)
Q Consensus 190 ~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~ 269 (333)
.++++|+++|++++|+||+++||||+|||+ +++.+++.+++++|+..||.+++.+|+.++ .....
T Consensus 157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~i~~~~~~a~~~~K~~~~---~~~~~-------- 221 (258)
T d2fw2a1 157 ASANEMLIAGRKLTAREACAKGLVSQVFLT----GTFTQEVMIQIKELASYNAIVLEECKALVR---CNIKL-------- 221 (258)
T ss_dssp HHHHHHHTTCCEEEHHHHHHTTSCSEEECS----TTHHHHHHHHHHHHTTSCHHHHHHHHHHHH---HHHHH--------
T ss_pred cccchhhccCcccccccccccccccccccc----cccccccchhhhhhhhhhHHHHHHHHHHHH---HhhcC--------
Confidence 999999999999999999999999999996 779999999999999999999999999999 76665
Q ss_pred CCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Q psy503 270 PGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVY 330 (333)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~ 330 (333)
+++++++.|...+..++.++|++|||++|+|||+|+|
T Consensus 222 ------------------------~l~~~~~~e~~~~~~~~~s~d~~Egi~af~EKR~p~f 258 (258)
T d2fw2a1 222 ------------------------ELEQANERECEVLRKIWSSAQGIESMLKYVENKIDEF 258 (258)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHSSCCCC
T ss_pred ------------------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCC
Confidence 7899999999999999999999999999999999998
|
| >d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Methylmalonyl CoA decarboxylase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4e-57 Score=414.14 Aligned_cols=257 Identities=24% Similarity=0.408 Sum_probs=225.3
Q ss_pred cceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC-CCCccccCCCchhhcccCHHH
Q psy503 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSL-VKDVFCAGADLKHRLTLNEDQ 112 (333)
Q Consensus 34 ~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~-~g~~F~~G~Dl~~~~~~~~~~ 112 (333)
|+++.+++ +++|++||||||+++|++|.+|+.+|.++|++++ ++++++|||+|. ++++||+|+|++++.....+
T Consensus 3 ~~~i~~~~---~~~v~~Itlnrp~~~Nal~~~~~~~l~~al~~~~-~~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~- 77 (261)
T d1ef8a_ 3 YQYVNVVT---INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLN-RPEIRCIILRAPSGSKVFSAGHDIHELPSGGRD- 77 (261)
T ss_dssp CSSEEEEE---ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTC-STTCCEEEEECCTTCSEEECCSCSTTC-----C-
T ss_pred CCEEEEEE---ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEeccccchhhcccccccccccCCcc-
Confidence 45677765 7999999999999999999999999999999997 457999999985 46799999999998653322
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHH
Q psy503 113 IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192 (333)
Q Consensus 113 ~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a 192 (333)
...+.+.+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++++++++++.+|..++
T Consensus 78 ~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~~l~r~~g~~~a 157 (261)
T d1ef8a_ 78 PLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIV 157 (261)
T ss_dssp TTCTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHHH
T ss_pred ccccccchhhhHHHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhcccccccccccccccccccCcccc
Confidence 12334567789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCC
Q psy503 193 KELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGR 272 (333)
Q Consensus 193 ~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~ 272 (333)
++++++|+.|+|+||+++||||+|+++ +++.+++.++|++|+..+|.+++.+|+.++ ...+..
T Consensus 158 ~~~~l~g~~~~a~eA~~~Glv~~vv~~----~~~~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~~---------- 220 (261)
T d1ef8a_ 158 KELIFTASPITAQRALAVGILNHVVEV----EELEDFTLQMAHHISEKAPLAIAVIKEELR---VLGEAH---------- 220 (261)
T ss_dssp HHHHHHCCCEEHHHHHHTTSCSEEECH----HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH---HHHHCC----------
T ss_pred ccccccCceEcHHHHHHcCCcceeeec----hhhhhhhHHHHHHHHhcCcHHHHHHHHHHH---HHHhcC----------
Confidence 999999999999999999999999995 889999999999999999999999999998 544330
Q ss_pred CCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 273 DGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
......++.+...+..++.++|++|||+||+|||+|+|+|
T Consensus 221 --------------------~~~~~~~e~~~~~~~~~~~s~D~~Egi~AfleKR~P~f~G 260 (261)
T d1ef8a_ 221 --------------------TMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNFVG 260 (261)
T ss_dssp --------------------CCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCCC
T ss_pred --------------------chhHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCcCCC
Confidence 0234445556667788899999999999999999999998
|
| >d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.6e-56 Score=404.51 Aligned_cols=245 Identities=31% Similarity=0.497 Sum_probs=228.3
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcc---cCHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLT---LNEDQIRSFVSTLR 121 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~---~~~~~~~~~~~~~~ 121 (333)
+++|++||||||+++|+||.+|+.+|.+++++++.|+++++|||+|. |+.||+|.|++.+.. ........+...++
T Consensus 6 ~G~va~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~-g~~f~aG~dl~~~~~~~~~~~~~~~~~~~~~~ 84 (253)
T d1uiya_ 6 KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGR-GKAFSAGADLAFLERVTELGAEENYRHSLSLM 84 (253)
T ss_dssp CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred eCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEecc-cccccccchhHHhhhccccCcccccchhhhhh
Confidence 67899999999999999999999999999999999999999999999 899999999988654 23444556677788
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRL 201 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~ 201 (333)
.++..+.++||||||+|||+|+|||++|+++|||||++++++|++||.++|++| +|++++|++++|..++++++++|++
T Consensus 85 ~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~-~~~~~~l~~~~g~~~a~~l~l~g~~ 163 (253)
T d1uiya_ 85 RLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVA-ALVSVILVRAVGEKAAKDLLLTGRL 163 (253)
T ss_dssp HHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCC-HHHHHHHHHHSCHHHHHHHHHHCCE
T ss_pred hhhhHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhccccccc-ccchhhhhcccCHHHHHHHhhcCcC
Confidence 899999999999999999999999999999999999999999999999999877 4567789999999999999999999
Q ss_pred CCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q psy503 202 VDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281 (333)
Q Consensus 202 isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (333)
++++||+++||||+|+|+ +++.+++.++++.++..++.++..+|+.++ .....
T Consensus 164 ~~a~eA~~~Glv~~v~~~----~~~~~~a~~~a~~~~~~~~~a~~~~K~~l~---~~~~~-------------------- 216 (253)
T d1uiya_ 164 VEAREAKALGLVNRIAPP----GKALEEAKALAEEVAKNAPTSLRLTKELLL---ALPGM-------------------- 216 (253)
T ss_dssp EEHHHHHHHTSCSEEECT----TCHHHHHHHHHHHHHHSCHHHHHHHHHHHH---HGGGS--------------------
T ss_pred CCHHHHHHhCCCcccccc----cccchhHHHHHHhhcccchHHHHHHHHHHH---HhhcC--------------------
Confidence 999999999999999996 668999999999999999999999999999 66655
Q ss_pred CCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Q psy503 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVY 330 (333)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~ 330 (333)
++++++..|...+..++.++|++||++||+|||+|+|
T Consensus 217 ------------~l~~~l~~e~~~~~~~~~s~d~~egi~af~eKR~P~f 253 (253)
T d1uiya_ 217 ------------GLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPRF 253 (253)
T ss_dssp ------------CHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCCC
T ss_pred ------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCC
Confidence 8999999999999999999999999999999999998
|
| >d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=4e-56 Score=409.99 Aligned_cols=251 Identities=25% Similarity=0.433 Sum_probs=228.5
Q ss_pred ecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC-------HH----
Q psy503 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN-------ED---- 111 (333)
Q Consensus 43 ~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~-------~~---- 111 (333)
..+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|. ++.||+|+|+.++.... ..
T Consensus 9 ~~~~~I~~itlnrP~~~Nals~~m~~el~~~l~~~~~d~~v~~vvltg~-~~~F~aG~dl~~~~~~~~~~~~~~~~~~~~ 87 (275)
T d1dcia_ 9 SAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGA-GKMFTSGIDLMDMASDILQPPGDDVARIAW 87 (275)
T ss_dssp EEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEES-TTCSBCCBCHHHHHHHHTSCCCSSHHHHHH
T ss_pred EccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEecc-ccccccCccHHHhhhcccccccccccchhh
Confidence 3468899999999999999999999999999999999999999999998 99999999998875321 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCH-H
Q psy503 112 QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGI-P 190 (333)
Q Consensus 112 ~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~-~ 190 (333)
....+...++.++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++++++|. .
T Consensus 88 ~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~~~~~g~~~ 167 (275)
T d1dcia_ 88 YLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRS 167 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGGTCSCHH
T ss_pred hhccchhhhHHHHHHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhccccccccccccccccccccccc
Confidence 123455667889999999999999999999999999999999999999999999999999999999999999999984 4
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCC
Q psy503 191 LAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSP 270 (333)
Q Consensus 191 ~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~ 270 (333)
.+++++++|+.++++||+++||||+|+|+ .+.+.+.+.++++.|+..+|.+++.+|+.++ ++...
T Consensus 168 ~~~~ll~~g~~~~a~eA~~~Glv~~v~~~---~~~l~~~~~~~a~~i~~~~p~a~~~~K~~l~---~~~~~--------- 232 (275)
T d1dcia_ 168 LVNELTFTARKMMADEALDSGLVSRVFPD---KDVMLNAAFALAADISSKSPVAVQGSKINLI---YSRDH--------- 232 (275)
T ss_dssp HHHHHHHHCCEEEHHHHHHHTSSSEEESS---HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH---HHHHS---------
T ss_pred ccccccccccccchhhhccCCCceeeeeh---hhhhhhcccccccccccccHHHHHHHHHHHH---HHhcC---------
Confidence 56799999999999999999999999996 4557788899999999999999999999998 77665
Q ss_pred CCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 271 GRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
+++++++.|...+..++.++|++|||+||+|||+|+|-.
T Consensus 233 -----------------------~l~~~~~~e~~~~~~~~~~~d~~Egi~AfleKR~pk~~~ 271 (275)
T d1dcia_ 233 -----------------------SVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSIT 271 (275)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGGCC
T ss_pred -----------------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCCC
Confidence 899999999999999999999999999999999999953
|
| >d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Naphthoate synthase MenB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=1.2e-53 Score=397.97 Aligned_cols=258 Identities=26% Similarity=0.389 Sum_probs=217.2
Q ss_pred cceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC------CCccccCCCchhhcc
Q psy503 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLV------KDVFCAGADLKHRLT 107 (333)
Q Consensus 34 ~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~------g~~F~~G~Dl~~~~~ 107 (333)
++.+.|+. ..++||++||||||+++|+||.+|+.+|.++|++++.|+++++|||+|.+ |+.||+|.|++....
T Consensus 17 ~~~i~~~~-~~~~gi~~ItlnRP~~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~ 95 (297)
T d1q52a_ 17 LTDITYHR-HVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGR 95 (297)
T ss_dssp CSSEEEEE-ESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC-------
T ss_pred CcceEEEE-EccCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhcc
Confidence 34455542 23689999999999999999999999999999999999999999999983 456777788876543
Q ss_pred cCHH-----------HHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCC-eEEeccccccCccC
Q psy503 108 LNED-----------QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGLVETKLAIIP 175 (333)
Q Consensus 108 ~~~~-----------~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~-a~f~~pe~~~Gl~p 175 (333)
.... ........+..+...|..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl~p 175 (297)
T d1q52a_ 96 SGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFD 175 (297)
T ss_dssp ----------------------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTCCC
T ss_pred cccccccccccchhhhHHHHHHHHHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhccccccccccceeeeecccccc
Confidence 2111 11223344678889999999999999999999999999999999999875 57999999999999
Q ss_pred ChhhhhhcccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCC
Q psy503 176 GAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGP 255 (333)
Q Consensus 176 ~~g~~~~L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~ 255 (333)
+++++++|+|++|.+++++++++|+.++|+||+++||||+|+|+ +++.+++.+++++++..+|.+++.+|++++
T Consensus 176 ~~~~~~~L~r~iG~~~a~~llltg~~~~a~eA~~~Glv~~vv~~----~el~~~~~~~a~~l~~~~~~a~~~~K~~~~-- 249 (297)
T d1q52a_ 176 GGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEH----AELETVGLQWAAEINAKSPQAQRMLKFAFN-- 249 (297)
T ss_dssp CSTTTHHHHHHHCHHHHHHHHHHCCEECHHHHHHHTSCSEEECG----GGHHHHHHHHHHHHHTSCHHHHHHHHHHHH--
T ss_pred ccccccccccccCccceeeccccccccchHhhhhhccccccCch----HHhhHHHHHHhhhhccCCHHHHHHHHHHHH--
Confidence 99999999999999999999999999999999999999999995 789999999999999999999999999998
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 256 GRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
... . .+.+....|.+.+..++.++|++||++||+|||+|+|++
T Consensus 250 -~~~-~--------------------------------~~~~~~~~~~~~~~~~~~s~d~~Egv~AF~eKR~P~f~~ 292 (297)
T d1q52a_ 250 -LLD-D--------------------------------GLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDWSP 292 (297)
T ss_dssp -HTT-T--------------------------------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCTT
T ss_pred -Hhh-c--------------------------------ChHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCCC
Confidence 433 2 456666677888888999999999999999999999975
|
| >d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-51 Score=372.15 Aligned_cols=239 Identities=21% Similarity=0.288 Sum_probs=215.6
Q ss_pred cceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHH--
Q psy503 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNED-- 111 (333)
Q Consensus 34 ~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~-- 111 (333)
|+.+.+++ +++|++||||||+++|++|.+|+.+|.++|++++.|+.+ +||++|. |++||+|+|++++......
T Consensus 2 ~~~i~~~~---~~gi~~Itlnrp~~~Nals~~~~~~l~~~l~~~~~d~~v-~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~ 76 (245)
T d2f6qa1 2 FETLVVTS---EDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGN-GDYYSSGNDLTNFTDIPPGGV 76 (245)
T ss_dssp CSSEEEEE---ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEES-TTCSBCCBCC----CCCTTHH
T ss_pred cceEEEEE---ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCce-EEeecCC-CccccCCccchhhhccccccc
Confidence 45566664 689999999999999999999999999999999999876 8999998 8999999999998764422
Q ss_pred --HHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCH
Q psy503 112 --QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGI 189 (333)
Q Consensus 112 --~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~ 189 (333)
........+++++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~ 156 (245)
T d2f6qa1 77 EEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSP 156 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCH
T ss_pred ccccchhhhHHHHHHhhhhhcCCceEEEECCccccccccchhhhhhhhhhccCeEecccccCCCCccccchhhccccccc
Confidence 233455567889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCC
Q psy503 190 PLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHS 269 (333)
Q Consensus 190 ~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~ 269 (333)
.++++++++|+.++|+||+++||||+|+|+ +++.+++.++|+++++.||.+++.+|+.++ +....
T Consensus 157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~-------- 221 (245)
T d2f6qa1 157 AKATEMLIFGKKLTAGEACAQGLVTEVFPD----STFQKEVWTRLKAFAKLPPNALRISKEVIR---KRERE-------- 221 (245)
T ss_dssp HHHHHHHTTCCCEEHHHHHHTTSCSEEECT----TTHHHHHHHHHHHHTTSCHHHHHHHHHHHH---GGGHH--------
T ss_pred chhhhhcccccccccccccccccccccCCc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhhhc--------
Confidence 999999999999999999999999999996 779999999999999999999999999999 76655
Q ss_pred CCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHH
Q psy503 270 PGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRV 316 (333)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~ 316 (333)
++++.+..|...+..+|.++|++
T Consensus 222 ------------------------~l~~~~~~e~~~~~~~~~s~d~~ 244 (245)
T d2f6qa1 222 ------------------------KLHAVNAEECNVLQGRWLSDECT 244 (245)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHTSHHHH
T ss_pred ------------------------CHHHHHHHHHHHHHHHhcCcccC
Confidence 78999999999999999999986
|
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=100.00 E-value=4.6e-51 Score=382.50 Aligned_cols=280 Identities=27% Similarity=0.370 Sum_probs=218.8
Q ss_pred EeeecCCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc---CHHHHHH
Q psy503 40 HNSPERPGIVELCMN-RPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRS 115 (333)
Q Consensus 40 ~~~~~~~~v~~Itln-~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~---~~~~~~~ 115 (333)
++++.++||++|+|| +|++.|+||.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++... .......
T Consensus 9 ~~~~~~~gva~i~ln~~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~ 87 (310)
T d1wdka4 9 TVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSG-KDVFIVGADITEFVENFKLPDAELIA 87 (310)
T ss_dssp EEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEES-SSSSBBCCCHHHHHHHTTSCHHHHHH
T ss_pred EEEEecCCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCccchhhhhhhhhcccccchhhhh
Confidence 344457899999998 7999999999999999999999999999999999998 8999999999997542 2233334
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHH
Q psy503 116 FVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKEL 195 (333)
Q Consensus 116 ~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~l 195 (333)
....+++++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+++++
T Consensus 88 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~iG~~~a~~l 167 (310)
T d1wdka4 88 GNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEW 167 (310)
T ss_dssp HHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHH
T ss_pred hhhHHHHHHHHhhcCCccceeeccccccccccccchhhhhhhccccceecccccccCCCccccchhhhhhhhhhhhhhhh
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCC-CCC-----
Q psy503 196 IYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQS-THS----- 269 (333)
Q Consensus 196 lltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~-~~~----- 269 (333)
+++|+.++++||+++||||+|+|+ +++.+.+.++|++++..++......+.... ........+. ...
T Consensus 168 ll~g~~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 240 (310)
T d1wdka4 168 IASGKENRAEDALKVSAVDAVVTA----DKLGAAALDLIKRAISGELDYKAKRQPKLE---KLKLNAIEQMMAFETAKGF 240 (310)
T ss_dssp HHHCCCEEHHHHHHTTSSSEEECG----GGHHHHHHHHHHHHHTTSSCHHHHHGGGGS---CCSCCHHHHHHHHHHHHHH
T ss_pred hccccccCHHHHhhccCccEEccH----HHHHHHHHHHHHHHHhcccchhhhhhhhcc---cccccchhhhHHHHHhhhh
Confidence 999999999999999999999995 889999999999998766433222221111 0000000000 000
Q ss_pred C-CCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Q psy503 270 P-GRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYK 327 (333)
Q Consensus 270 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~ 327 (333)
. ..+...+++....+..+..+...+++++|+.|.+.|.+++.+++.+++|.+|++||.
T Consensus 241 ~~~~~~~~~pA~~~~l~~v~~~~~~~~~~~L~~E~~~f~~l~~t~~a~~~i~aF~~kr~ 299 (310)
T d1wdka4 241 VAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQE 299 (310)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred hhhhccCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhh
Confidence 0 000000000000000011112238999999999999999999999999999999875
|
| >d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=100.00 E-value=7.8e-51 Score=369.80 Aligned_cols=243 Identities=21% Similarity=0.310 Sum_probs=225.1
Q ss_pred EEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHH
Q psy503 37 IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSF 116 (333)
Q Consensus 37 ~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~ 116 (333)
+.+++ +.++||++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.++++||+|+|++++..........+
T Consensus 4 ilve~-~~~~gIa~itln~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~~~~~~~~~ 81 (249)
T d1sg4a1 4 VLVEP-DAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGY 81 (249)
T ss_dssp EEEEE-ETTTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHH
T ss_pred EEEEE-ECCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEeccccccccccccccccccc
Confidence 34443 347889999999996 7999999999999999999999999999999985668999999999988777778888
Q ss_pred HHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEE--eccccccCccCChhhhhhcccccCHHHHHH
Q psy503 117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM--GLVETKLAIIPGAGGTQRLPRIVGIPLAKE 194 (333)
Q Consensus 117 ~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f--~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~ 194 (333)
+..+++++.++..+||||||+|||+|+|||++|+++||+||++++++| ++||+++|++|++|++++|++++|+.++++
T Consensus 82 ~~~~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~ 161 (249)
T d1sg4a1 82 WKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAER 161 (249)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHH
T ss_pred chhhHHHHHhhhcCccccchhhcccccccccccccccccceeeccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999999999999999999999999999876 789999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCC
Q psy503 195 LIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDG 274 (333)
Q Consensus 195 llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~ 274 (333)
++++|++++|+||+++||||+|+|+ +++.+++.+++++++..||.+++.+|+.++ +....
T Consensus 162 lll~g~~~~a~~A~~~Glv~~v~~~----~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~---~~~~~------------- 221 (249)
T d1sg4a1 162 ALQLGLLFPPAEALQVGIVDQVVPE----EQVQSTALSAIAQWMAIPDHARQLTKAMMR---KATAS------------- 221 (249)
T ss_dssp HHHHTCCBCHHHHHHHTSSSEEECG----GGHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHHHH-------------
T ss_pred cccccccccHHHHHhhccccccCCh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHHhC-------------
Confidence 9999999999999999999999995 789999999999999999999999999999 66655
Q ss_pred CCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHH
Q psy503 275 QGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLK 320 (333)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~ 320 (333)
.+.+.++.|.+.+...+.+++++++|+
T Consensus 222 -------------------~l~~~~~~e~~~~~~~~~~e~~~~~le 248 (249)
T d1sg4a1 222 -------------------RLVTQRDADVQNFVSFISKDSIQKSLQ 248 (249)
T ss_dssp -------------------HHHTTHHHHHHHHHHHHTSHHHHHHHT
T ss_pred -------------------CHHHHHHHHHHHHHHHhCCHHHHHhcC
Confidence 788889999999999999999998874
|
| >d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Carbapenem biosynthes protein CarB species: Pectobacterium carotovorum [TaxId: 554]
Probab=100.00 E-value=1.6e-50 Score=363.64 Aligned_cols=212 Identities=23% Similarity=0.310 Sum_probs=197.4
Q ss_pred eecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC-HHHHHHHHHHH
Q psy503 42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN-EDQIRSFVSTL 120 (333)
Q Consensus 42 ~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~-~~~~~~~~~~~ 120 (333)
.+.+++|++||||||++.|++|.+|+.+|.+++++++.|+++++|||+|.++++||+|.|++++.... .+....+...+
T Consensus 4 ~~~~d~I~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 83 (230)
T d2a7ka1 4 EENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRV 83 (230)
T ss_dssp EEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHH
T ss_pred EEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccccccccccchhhh
Confidence 45588999999999999999999999999999999999999999999998678999999999987653 44567778889
Q ss_pred HHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 121 ~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+ .+|++++|..++++++++|+
T Consensus 84 ~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~-~~l~~~iG~~~a~~l~l~g~ 162 (230)
T d2a7ka1 84 IDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGA-AILGFTHGFSTMQEIIYQCQ 162 (230)
T ss_dssp HHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHH-HHHHHHHCHHHHHHHHHHCC
T ss_pred hhhhhcccchhcceeeecccccccccccchhccchhhccccchhhhccccccccccccc-cccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999887765 57999999999999999999
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcc
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQY 261 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~ 261 (333)
.++|+||+++||||+|+|+ +++.+++.++|++|+..||.+++.+|+.++ +....
T Consensus 163 ~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~---~~~~~ 216 (230)
T d2a7ka1 163 SLDAPRCVDYRLVNQVVES----SALLDAAITQAHVMASYPASAFINTKRAVN---KPFIH 216 (230)
T ss_dssp CBCHHHHHHHTCCSEEECH----HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHHHH
T ss_pred cchHHHHHHhhhcccCCCh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHHhc
Confidence 9999999999999999995 889999999999999999999999999999 66554
|
| >d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.2e-49 Score=359.52 Aligned_cols=222 Identities=17% Similarity=0.152 Sum_probs=194.2
Q ss_pred ccceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCH--
Q psy503 33 KLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-- 110 (333)
Q Consensus 33 ~~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~-- 110 (333)
+++.+.+++ +++|++||||||+++|++|.+|+.+|.++|++++.|+++++|||+|. |++||+|+|++++.....
T Consensus 3 ~~e~i~~~~---~~~v~~Itlnrp~~~Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~-g~~FsaG~Dl~~~~~~~~~~ 78 (266)
T d1pjha_ 3 QNEKISYRI---EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSS-GRFFSSGADFKGIAKAQGDD 78 (266)
T ss_dssp CBTTEEEEE---ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECB-TTBSBCCBCHHHHHC-----
T ss_pred CCCeEEEEE---ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEecc-ccccccchhHHHHHhccccc
Confidence 456678776 79999999999999999999999999999999999999999999999 899999999999865321
Q ss_pred ---------HHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEe-CCeEEeccccccCccCChhhh
Q psy503 111 ---------DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA-SNVRMGLVETKLAIIPGAGGT 180 (333)
Q Consensus 111 ---------~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias-~~a~f~~pe~~~Gl~p~~g~~ 180 (333)
+....++..++.++..+.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~ 158 (266)
T d1pjha_ 79 TNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTT 158 (266)
T ss_dssp --CCSSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHH
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccccccccchhccchhhhhhccccccccccccccccccccc
Confidence 1234566778889999999999999999999999999999999999996 558999999999999999999
Q ss_pred hhcccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhH-HH-HHHHHHHHHHhhcCHHHHHHHHHHhcCCCCC
Q psy503 181 QRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNA-AY-LASLRIAEDIAHNGPIAVRMAKRSIDGPGRG 258 (333)
Q Consensus 181 ~~L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~-l~-~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~ 258 (333)
++|+|++|..++++++++|+.++|+||+++||||+|+++.+...+ +. ..+.++++.+...++.++..+|+.++ ..
T Consensus 159 ~~l~r~~g~~~a~~llltg~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~K~~l~---~~ 235 (266)
T d1pjha_ 159 VSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLK---SN 235 (266)
T ss_dssp HHHHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH---TT
T ss_pred cccccccccchhhhhhccCCcCCHHHHHHCCCEeEeeCchhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hh
Confidence 999999999999999999999999999999999999987543322 22 23456778888899999999999998 55
Q ss_pred Ccc
Q psy503 259 TQY 261 (333)
Q Consensus 259 ~~~ 261 (333)
...
T Consensus 236 ~~~ 238 (266)
T d1pjha_ 236 HID 238 (266)
T ss_dssp THH
T ss_pred hHH
Confidence 443
|
| >d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 6-oxo camphor hydrolase species: Rhodococcus erythropolis [TaxId: 1833]
Probab=100.00 E-value=2.9e-48 Score=352.79 Aligned_cols=218 Identities=21% Similarity=0.298 Sum_probs=203.6
Q ss_pred cCccceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCH
Q psy503 31 GRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE 110 (333)
Q Consensus 31 ~~~~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~ 110 (333)
..+|+.+.++. +++|++||||||++.|+||.+|+.+|.++|++++.|+++++|||+|. |++||+|.|++++.....
T Consensus 9 ~~~y~~i~~~~---~~~v~~itln~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~-g~~FsaG~Dl~~~~~~~~ 84 (249)
T d1szoa_ 9 SQKYENIRLER---DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGT-GPSFCNEIDFTSFNLGTP 84 (249)
T ss_dssp TTSCTTEEEEE---ETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECB-TTBSBCEECGGGSCCSSH
T ss_pred hCCCCeEEEEE---ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcceEeeecc-cccccccchhhhhhcccc
Confidence 35677788775 68999999999999999999999999999999999999999999999 899999999999988777
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEe-ccccccCccCChhhhhhcccccCH
Q psy503 111 DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG-LVETKLAIIPGAGGTQRLPRIVGI 189 (333)
Q Consensus 111 ~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~-~pe~~~Gl~p~~g~~~~L~r~iG~ 189 (333)
+....+...++.++..+.++||||||+|||+|.| |++|+++||+||++++++|. +||+++|++|++|++++|+|++|.
T Consensus 85 ~~~~~~~~~~~~l~~~i~~~~~pvIa~v~g~~~G-G~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~ig~ 163 (249)
T d1szoa_ 85 HDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGS 163 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSCEEEEECSCBCS-STHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCH
T ss_pred cchhhhhhhhhhhhhhcccCcccceeeecccccc-ccccccccccccccCCcEEEEeeccccccccccccccccccccCc
Confidence 7788888889999999999999999999998865 67899999999999999985 799999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCc
Q psy503 190 PLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQ 260 (333)
Q Consensus 190 ~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~ 260 (333)
.++++++++|++++++||+++||||+|||+ +++.+++.++|+.++..||.+++.+|+.++ ++..
T Consensus 164 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~ 227 (249)
T d1szoa_ 164 NRGRYFLLTGQELDARTALDYGAVNEVLSE----QELLPRAWELARGIAEKPLLARRYARKVLT---RQLR 227 (249)
T ss_dssp HHHHHHHHTTCEEEHHHHHHHTSCSEEECH----HHHHHHHHHHHHHHHTSCHHHHHHHHHHHS---HHHH
T ss_pred cceeeecccCCCCCHHHHHHhCCcCcccCH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHHh
Confidence 999999999999999999999999999995 889999999999999999999999999998 6543
|
| >d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.26 E-value=6.1e-06 Score=68.73 Aligned_cols=135 Identities=13% Similarity=0.125 Sum_probs=90.1
Q ss_pred CCHHHHHHHHHHHHHHhc---CCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 62 LNATLVEEILTAVEAIRG---DEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~---d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
+|.++..++...|..++. ++.+ -+.|.+.||..+. | ..++..+..++.|+...+
T Consensus 22 I~~~~~~~~i~~l~~l~~~~~~~~I-~l~InS~GG~v~~-g---------------------l~i~d~i~~~~~~v~t~~ 78 (179)
T d2cbya1 22 VNDEIANRLCAQILLLAAEDASKDI-SLYINSPGGSISA-G---------------------MAIYDTMVLAPCDIATYA 78 (179)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSSCE-EEEEEECCBCHHH-H---------------------HHHHHHHHHCSSCEEEEE
T ss_pred ECHHHHHHHHHHHHHHhccCCCCeE-EEEeeCCCCCHHH-H---------------------HHHHHHHHhhccceeeeh
Confidence 788888888887655542 2333 4555666333111 1 245566677899999999
Q ss_pred chhhhHhhHHHHHhCC--EEEEeCCeEEeccccccCccCChhhh---------------hhcccc--cCHHHHHHHHHcC
Q psy503 139 DGSAYGGGLEMALACD--IRVAASNVRMGLVETKLAIIPGAGGT---------------QRLPRI--VGIPLAKELIYTG 199 (333)
Q Consensus 139 ~G~a~GgG~~Lal~cD--~rias~~a~f~~pe~~~Gl~p~~g~~---------------~~L~r~--iG~~~a~~llltG 199 (333)
.|.|.+.|..+.+++| .|++.++++|.+-+...|......-. ..+.+. ........++-.-
T Consensus 79 ~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~G~~~~i~~~~~~l~~~~~~i~~i~a~~tg~~~~~i~~~~~~d 158 (179)
T d2cbya1 79 MGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRD 158 (179)
T ss_dssp EEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTT
T ss_pred hhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhcCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCC
Confidence 9999999999999999 89999999999877654442111000 000111 1345556666777
Q ss_pred CCCCHHHHHHcCCcceecCC
Q psy503 200 RLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 200 ~~isa~eAl~~Glv~~vv~~ 219 (333)
..++|+||+++||||+|+.+
T Consensus 159 ~~l~a~EA~~~GliDeIi~~ 178 (179)
T d2cbya1 159 RWFTAAEALEYGFVDHIITR 178 (179)
T ss_dssp CEEEHHHHHHHTSCSEECSC
T ss_pred ceecHHHHHHcCCCcEEecC
Confidence 88899999999999999974
|
| >d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Escherichia coli [TaxId: 562]
Probab=98.26 E-value=1.2e-06 Score=73.42 Aligned_cols=136 Identities=13% Similarity=0.088 Sum_probs=92.2
Q ss_pred CCHHHHHHHHHHHHHHhcCC--CceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec
Q psy503 62 LNATLVEEILTAVEAIRGDE--EVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d~--~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~ 139 (333)
++.++...+...+..++.++ ..-.+.|.+.||. + .....++..+..++.|+...+.
T Consensus 25 I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~GG~-------v---------------~~g~~i~d~i~~~~~~v~tv~~ 82 (183)
T d1yg6a1 25 VEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGV-------I---------------TAGMSIYDTMQFIKPDVSTICM 82 (183)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBC-------H---------------HHHHHHHHHHHHSSSCEEEEEE
T ss_pred ECHHHHHHHHHHHHHhhhhccCCceEEEEeCCCcc-------H---------------HHHHHHHHHHHhCCCCEEEEEE
Confidence 78888888888887775432 1224455665332 2 1223466777788999999999
Q ss_pred hhhhHhhHHHHHhCC--EEEEeCCeEEeccccccCccCChhhhh---------------hcccc--cCHHHHHHHHHcCC
Q psy503 140 GSAYGGGLEMALACD--IRVAASNVRMGLVETKLAIIPGAGGTQ---------------RLPRI--VGIPLAKELIYTGR 200 (333)
Q Consensus 140 G~a~GgG~~Lal~cD--~rias~~a~f~~pe~~~Gl~p~~g~~~---------------~L~r~--iG~~~a~~llltG~ 200 (333)
|.|.+.|..+.+++| .|++.++++|.+-+...|..-...-.. .+.+. +......+++-.-.
T Consensus 83 G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~tg~~~e~i~~~~~~d~ 162 (183)
T d1yg6a1 83 GQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDR 162 (183)
T ss_dssp EEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCE
T ss_pred EEeHHHHHHHHHcCCCCceeeCCCceEEecccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCc
Confidence 999999999999998 799999999988776655421111000 01111 13444555554555
Q ss_pred CCCHHHHHHcCCcceecCC
Q psy503 201 LVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~ 219 (333)
.++|+||+++||||+|++.
T Consensus 163 ~lta~EAl~~GliD~Ii~~ 181 (183)
T d1yg6a1 163 FLSAPEAVEYGLVDSILTH 181 (183)
T ss_dssp EEEHHHHHHHTSSSEECCC
T ss_pred cccHHHHHHcCCCcEEecc
Confidence 6799999999999999974
|
| >d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.14 E-value=1.6e-05 Score=66.91 Aligned_cols=135 Identities=10% Similarity=0.105 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 62 LNATLVEEILTAVEAIRGD---EEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d---~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
++.++...+...|..++.+ ..+ -+.|.+.||. .-+ ...++..+..++.|+...+
T Consensus 33 I~~~~~~~~~~~l~~l~~~~~~~~I-~l~InS~GG~-v~~---------------------glai~d~i~~~~~~v~t~~ 89 (192)
T d1y7oa1 33 VEDNMANSVIAQLLFLDAQDSTKDI-YLYVNTPGGS-VSA---------------------GLAIVDTMNFIKADVQTIV 89 (192)
T ss_dssp BCHHHHHHHHHHHHHHHHHCTTSCE-EEEEEECCBC-HHH---------------------HHHHHHHHHHSSSCEEEEE
T ss_pred EchHHHHHHHHHHHHhhhhcccCce-eeeecCCCCC-HHH---------------------HHHHHHHHHhcCcceEEEe
Confidence 7888888888877666422 233 4555776333 211 2345666778899999999
Q ss_pred chhhhHhhHHHHHh--CCEEEEeCCeEEeccccccCccCChhhhh------hcc-----------cc--cCHHHHHHHHH
Q psy503 139 DGSAYGGGLEMALA--CDIRVAASNVRMGLVETKLAIIPGAGGTQ------RLP-----------RI--VGIPLAKELIY 197 (333)
Q Consensus 139 ~G~a~GgG~~Lal~--cD~rias~~a~f~~pe~~~Gl~p~~g~~~------~L~-----------r~--iG~~~a~~lll 197 (333)
.|.|.+.|..|+++ +|.|++.++++|.+-....|......... .+. .. ....+..+.+-
T Consensus 90 ~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~~~~tg~~~~~i~~~~~ 169 (192)
T d1y7oa1 90 MGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAE 169 (192)
T ss_dssp EEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred ccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhc
Confidence 99999999888776 68999999999999887766532211110 011 11 13555666777
Q ss_pred cCCCCCHHHHHHcCCcceecCC
Q psy503 198 TGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 198 tG~~isa~eAl~~Glv~~vv~~ 219 (333)
....++|+||+++||||+|+.+
T Consensus 170 rd~~lsa~EAleyGliD~Ii~~ 191 (192)
T d1y7oa1 170 RDNWMSAQETLEYGFIDEIMAN 191 (192)
T ss_dssp SCCCBCHHHHHHHTSCSEECCC
T ss_pred CCceecHHHHHHcCCCcEEecC
Confidence 7788999999999999999874
|
| >d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Plasmodium falciparum [TaxId: 5833]
Probab=98.13 E-value=2e-05 Score=66.08 Aligned_cols=135 Identities=10% Similarity=0.066 Sum_probs=92.1
Q ss_pred CCHHHHHHHHHHHHHHhcC--CCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec
Q psy503 62 LNATLVEEILTAVEAIRGD--EEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d--~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~ 139 (333)
+|.++..++...|..++.. +++ -+.|.+.||..++ ...++..+..++.|+...+.
T Consensus 27 Id~~~~~~~i~~l~~l~~~~~~~I-~l~INS~GG~v~~----------------------g~ai~d~i~~~~~~v~tv~~ 83 (190)
T d2f6ia1 27 INKKTADELISQLLYLDNINHNDI-KIYINSPGGSINE----------------------GLAILDIFNYIKSDIQTISF 83 (190)
T ss_dssp BCHHHHHHHHHHHHHHHHHCCSCE-EEEEEECCBCHHH----------------------HHHHHHHHHHSSSCEEEEEE
T ss_pred eCHHHHHHHHHHHHHHhccCCCCe-EEEEeCchhhhhH----------------------HHHHHHHHHhhCCceEEEEe
Confidence 7888888888888777542 334 4555666333221 23455666678899999999
Q ss_pred hhhhHhhHHHHHhCC--EEEEeCCeEEeccccccCccCChhhh----h-----------hccccc--CHHHHHHHHHcCC
Q psy503 140 GSAYGGGLEMALACD--IRVAASNVRMGLVETKLAIIPGAGGT----Q-----------RLPRIV--GIPLAKELIYTGR 200 (333)
Q Consensus 140 G~a~GgG~~Lal~cD--~rias~~a~f~~pe~~~Gl~p~~g~~----~-----------~L~r~i--G~~~a~~llltG~ 200 (333)
|.|.+.|..+++++| .|++.++++|-+.....|..-...-. . .+.+.. ......+.+-.-.
T Consensus 84 G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~G~~~di~~~~~~l~~~~~~~~~i~a~~tg~~~~~i~~~~~~d~ 163 (190)
T d2f6ia1 84 GLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDY 163 (190)
T ss_dssp EEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTC
T ss_pred ccccchhHHHHHhCCCCccccCCCcEEEEcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhccCCe
Confidence 999999999999988 69999999999988876652111100 0 111111 2334445555566
Q ss_pred CCCHHHHHHcCCcceecCC
Q psy503 201 LVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~ 219 (333)
.++|+||+++||||+|+++
T Consensus 164 ~l~a~EAl~~GliD~Ii~~ 182 (190)
T d2f6ia1 164 YMNALEAKQYGIIDEVIET 182 (190)
T ss_dssp EECHHHHHHHTSCSEECCC
T ss_pred eecHHHHHHcCCCcEEccc
Confidence 7899999999999999975
|
| >d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=97.94 E-value=7.3e-05 Score=62.76 Aligned_cols=135 Identities=11% Similarity=0.135 Sum_probs=91.3
Q ss_pred CCHHHHHHHHHHHHHHhc---CCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 62 LNATLVEEILTAVEAIRG---DEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~---d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
++.++...+...|..++. ++++ -+.|.+.||. +- ....++..+..++.|+...+
T Consensus 35 I~~~~~~~~i~~l~~l~~~~~~~~I-~l~InS~GG~-v~---------------------~g~~i~d~i~~~~~~V~tv~ 91 (193)
T d1tg6a1 35 IDDSVASLVIAQLLFLQSESNKKPI-HMYINSPGGV-VT---------------------AGLAIYDTMQYILNPICTWC 91 (193)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSSCE-EEEEEECCBC-HH---------------------HHHHHHHHHHHSCSCEEEEE
T ss_pred EchHHHHHHHHHHHHhcccCCCcEE-EEEeecCccc-HH---------------------HHHHHHHHHHhhcCceEEEE
Confidence 677888888776666653 2334 4445776333 21 12345667778889999999
Q ss_pred chhhhHhhHHHHHhCC--EEEEeCCeEEeccccccCccCChhhhh-------h--------cccc--cCHHHHHHHHHcC
Q psy503 139 DGSAYGGGLEMALACD--IRVAASNVRMGLVETKLAIIPGAGGTQ-------R--------LPRI--VGIPLAKELIYTG 199 (333)
Q Consensus 139 ~G~a~GgG~~Lal~cD--~rias~~a~f~~pe~~~Gl~p~~g~~~-------~--------L~r~--iG~~~a~~llltG 199 (333)
-|.|.+.|..|.+++| .|++.++++|.+-....|..-...-.. . +... ....+..+++-.-
T Consensus 92 ~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~di~~~~~el~~~~~~i~~i~a~~Tg~~~~~i~~~~~rD 171 (193)
T d1tg6a1 92 VGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERD 171 (193)
T ss_dssp EEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSC
T ss_pred ccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccC
Confidence 9999999999999999 599999999999887666522111000 0 1111 1244445555555
Q ss_pred CCCCHHHHHHcCCcceecCC
Q psy503 200 RLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 200 ~~isa~eAl~~Glv~~vv~~ 219 (333)
..++|+||+++||||+|+..
T Consensus 172 ~~lta~EAl~yGliD~Ii~~ 191 (193)
T d1tg6a1 172 RYMSPMEAQEFGILDKVLVH 191 (193)
T ss_dssp EEECHHHHHHHTSCSEECSS
T ss_pred ccCCHHHHHHcCCCCEEccC
Confidence 56899999999999999874
|
| >d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=8.6e-05 Score=66.83 Aligned_cols=138 Identities=14% Similarity=0.128 Sum_probs=101.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec
Q psy503 60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (333)
Q Consensus 60 Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~ 139 (333)
-.++++-+..-.+.++.++.- .+-+|-|.-+ +++++ |.+- +.......+..++..+..+.+|+|+.|-
T Consensus 130 G~~~p~~~rKa~r~~~~a~~~-~~Pii~~vDt-pG~~~-g~~~---------E~~g~~~~~a~~~~~~~~~~vP~i~vv~ 197 (316)
T d2f9ya1 130 GMPAPEGYRKALRLMQMAERF-KMPIITFIDT-PGAYP-GVGA---------EERGQSEAIARNLREMSRLGVPVVCTVI 197 (316)
T ss_dssp GCCCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-SCSCC-SHHH---------HHTTHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred ccccHHHHHHHHHHHHHHHHc-CcceEEEEec-CcccC-Cccc---------ccccHHHHHHHHHHHHHhCCCceEEEEE
Confidence 457889999988988888765 3556666555 55333 3222 2233445667788889999999999999
Q ss_pred hhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCC
Q psy503 140 GSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 140 G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~ 219 (333)
|.+.|||......+|.+++-++++|+. +.|.+.++.++...--...+.+. ..+++++.+++|+||+|++.
T Consensus 198 g~g~~gga~a~~~~d~v~m~~~a~~sv------ispEg~AsILwkd~~~a~eaAea----lklta~dL~~lgiIDeII~E 267 (316)
T d2f9ya1 198 GEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDSIIPE 267 (316)
T ss_dssp EEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSCCCCC
T ss_pred hhhhchhhhhhhhhhHHHHHhhhHHhh------ccchhhhhHhhccchhhcchHHH----HhhhhHHHHHcCchhhcccC
Confidence 999999998888999999999999982 24555555555544434444444 36899999999999999974
|
| >d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=97.90 E-value=0.00016 Score=63.17 Aligned_cols=137 Identities=15% Similarity=0.159 Sum_probs=87.0
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l 127 (333)
|.++-.+..-+.-+++......+..+.+.+.+..-.-+.++.|. |..+.+- ......+-..+..+ ..+
T Consensus 91 v~v~a~Dftv~GGS~g~~~~~K~~~a~e~A~~~~lPlV~l~~sg-------G~r~~eg----~~~l~~~~~~~~~~-~~l 158 (253)
T d1on3a1 91 VHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSG-------GARIQEG----IDSLSGYGKMFFAN-VKL 158 (253)
T ss_dssp EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEEC-------SBCGGGT----HHHHHHHHHHHHHH-HHH
T ss_pred chhhhchhhhhcccceecccchhhhhHHHHhhcCCCeEEEEecC-------CCccccc----ceeccccceehHHH-HHH
Confidence 55555555557788999999999999998876654333344443 2333321 11111121222222 333
Q ss_pred hcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHHH
Q psy503 128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEA 207 (333)
Q Consensus 128 ~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~eA 207 (333)
.. ..|+|+++.|+|.||+.....+||++|+.+.+.+++.-. ..+ -..+|+.++.+|.
T Consensus 159 s~-~vP~i~vv~Gp~~GG~a~~~~~~d~vi~~~~a~i~~aGP-----------~vV-----------e~~~ge~~~~eel 215 (253)
T d1on3a1 159 SG-VVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGP-----------QVI-----------KSVTGEDVTADEL 215 (253)
T ss_dssp TT-TSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESSCH-----------HHH-----------HHHHCCCCCHHHH
T ss_pred hc-cceEEEEEecCcccceeeccchhhheeccccceEEecCc-----------chh-----------hhhhCCcCChHhc
Confidence 33 489999999999999999999999999999877653211 011 1134677765533
Q ss_pred -------HHcCCcceecCC
Q psy503 208 -------KSIGLVNTLTPQ 219 (333)
Q Consensus 208 -------l~~Glv~~vv~~ 219 (333)
.+.|+||.++++
T Consensus 216 Gga~~h~~~sG~iD~v~~~ 234 (253)
T d1on3a1 216 GGAEAHMAISGNIHFVAED 234 (253)
T ss_dssp HSHHHHHHTTCCCSEEESS
T ss_pred cCHHHhhhccccceEEECC
Confidence 457999999997
|
| >d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.71 E-value=0.00034 Score=61.17 Aligned_cols=149 Identities=13% Similarity=0.137 Sum_probs=92.9
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHH
Q psy503 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ 126 (333)
Q Consensus 47 ~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~ 126 (333)
.|.++-.+..-+.-+++....+.+.++++.+.+.. +-+|.|.-. ++ ..+.+-. ........ +......
T Consensus 89 ~v~v~a~Dftv~gGS~g~~~~~K~~r~~e~A~~~~-lPlI~l~ds-gG-----arm~e~~----~~~~~~~~-~~~~~~~ 156 (258)
T d1xnya1 89 PVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTG-CPVVGINDS-GG-----ARIQEGV----ASLGAYGE-IFRRNTH 156 (258)
T ss_dssp EEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECC-CS-----BCGGGTH----HHHHHHHH-HHHHHHH
T ss_pred EEEEEechhhhhcCccchhhHHHHHHHHHHHHHcC-CceEEEecC-CC-----cccCccc----ccccchhH-HHHHHHH
Confidence 35556666655778899999999999999887654 456666554 33 3333211 11111111 1122222
Q ss_pred HhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeC-CeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHH
Q psy503 127 LESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS-NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDST 205 (333)
Q Consensus 127 l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~-~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~ 205 (333)
+ .-.+|+|+++.|+|.||+.....+||++|+.+ .+.+++.- +... -..+|+.++.+
T Consensus 157 ~-s~~vP~I~vv~G~~~gG~a~~~~~~~~vim~~~~a~i~~aG--------------------P~vv--~~~~ge~i~~e 213 (258)
T d1xnya1 157 A-SGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITG--------------------PDVI--KTVTGEDVGFE 213 (258)
T ss_dssp T-TTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESSC--------------------HHHH--HHHHCCCCCHH
T ss_pred H-cCCCCEEEEEcCCcChhHHHHHHhccchhhcccceEEEecC--------------------HHHH--HHHhcCccChH
Confidence 2 34599999999999999999999999988875 45544211 1111 13567888888
Q ss_pred HH-------HHcCCcceecCCCCChhHHHHHHHHH
Q psy503 206 EA-------KSIGLVNTLTPQNPNQNAAYLASLRI 233 (333)
Q Consensus 206 eA-------l~~Glv~~vv~~~~~~~~l~~~a~~~ 233 (333)
|+ ..-|++|.++++ +++..+.+.++
T Consensus 214 elgga~~h~~~sG~~d~v~~d---e~ea~~~~r~~ 245 (258)
T d1xnya1 214 ELGGARTHNSTSGVAHHMAGD---EKDAVEYVKQL 245 (258)
T ss_dssp HHHBHHHHHHTSSCCSEEESS---HHHHHHHHHHH
T ss_pred HhccHHHHHhcCCeeEEEeCC---HHHHHHHHHHH
Confidence 75 456999999996 34444444433
|
| >d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=97.63 E-value=0.0015 Score=56.70 Aligned_cols=137 Identities=15% Similarity=0.186 Sum_probs=85.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l 127 (333)
|+++..+..-..-+++......+.++.+.+.+..- -+|.+... + |..+.+-. .....+-+.+ .....
T Consensus 88 v~v~a~D~t~~gGs~g~~~~~K~~r~~e~A~~~~~-P~I~~~ds-g-----G~r~~e~~----~~l~~~~~~~-~~~~~- 154 (251)
T d1vrga1 88 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMGI-PVIGINDS-G-----GARIQEGV----DALAGYGEIF-LRNTL- 154 (251)
T ss_dssp EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTC-CEEEEEEE-C-----SBCGGGTH----HHHHHHHHHH-HHHHH-
T ss_pred EEEeeehhhhhhcccchHHHHHHHHHHHHHHHcCC-CEEEEEcC-C-----Cccccccc----cccccchHHH-HHHHH-
Confidence 45555554446788888888899998888776543 45555443 2 33343311 1111111112 22222
Q ss_pred hcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCC-eEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHH
Q psy503 128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTE 206 (333)
Q Consensus 128 ~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~-a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~e 206 (333)
..-..|+|++|.|+|.||+.....+||++|+.++ +.+. +.+ +... -..+|+.++.+|
T Consensus 155 ~s~~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i~-------~aG-------------p~vv--~~~~ge~~~~ee 212 (251)
T d1vrga1 155 ASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMF-------ITG-------------PNVI--KAVTGEEISQED 212 (251)
T ss_dssp HTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCB-------SSC-------------HHHH--HHHHCCCCCHHH
T ss_pred HCCCCCEEEEEccCccccceehhhhCceEEEEccceeEE-------ecC-------------chhh--hhhcCCcCChHH
Confidence 2457999999999999999999999999998754 3322 111 1111 125678898887
Q ss_pred H-------HHcCCcceecCC
Q psy503 207 A-------KSIGLVNTLTPQ 219 (333)
Q Consensus 207 A-------l~~Glv~~vv~~ 219 (333)
. .+.|++|.++++
T Consensus 213 lGga~~h~~~sG~~D~v~~d 232 (251)
T d1vrga1 213 LGGAMVHNQKSGNAHFLADN 232 (251)
T ss_dssp HHBHHHHHHTSCCCSEEESS
T ss_pred ccchhhhhhccccceEEECC
Confidence 5 467999999996
|
| >d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.56 E-value=0.0016 Score=56.69 Aligned_cols=151 Identities=17% Similarity=0.153 Sum_probs=93.1
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
...|.++-.+..-+.-+++....+.+.++.+.+.++. +-+|.+.-. + |..+.+-. . .... ...+....
T Consensus 88 G~~v~v~a~Dft~~gGS~g~~~g~K~~ra~e~A~~~~-lP~I~l~ds-g-----Gar~~eg~---~-~~~~-~~~~~~~~ 155 (258)
T d2a7sa1 88 GRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTG-RPLIGINDG-A-----GARIQEGV---V-SLGL-YSRIFRNN 155 (258)
T ss_dssp SSEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECC-C-----SBCGGGCT---H-HHHH-HHHHHHHH
T ss_pred cceEEEecccceEeCCccchhhhhHHHHHHHHHHhcC-CceEEEecc-C-----Cccccccc---c-cccc-hhhHHHHH
Confidence 3345555555555778899999999999999887664 345555443 2 33443211 0 1111 11222222
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeC-CeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS-NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~-~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
. ......|+|+++.|+|.||+......||++|+.+ .+.++ +. |+...+ ..+|+.++
T Consensus 156 ~-~~~~~vP~I~~v~G~~~gG~a~~~~~~d~~vm~~~~a~i~-------~a-------------GP~vV~--~~~ge~~~ 212 (258)
T d2a7sa1 156 I-LASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMF-------IT-------------GPDVIK--TVTGEEVT 212 (258)
T ss_dssp H-HHTTTSCEEEEECSCCBSGGGHHHHHSSEEEEEBTTBBCB-------SS-------------CHHHHH--HHHCCCCC
T ss_pred H-HHcCCCCEEEEEecCcccHHHHHHHhccceEeecCceEEE-------cc-------------ChhHHH--HhcCCccC
Confidence 2 2345699999999999999999999999998865 45433 21 111111 24678888
Q ss_pred HHHH-------HHcCCcceecCCCCChhHHHHHHHHH
Q psy503 204 STEA-------KSIGLVNTLTPQNPNQNAAYLASLRI 233 (333)
Q Consensus 204 a~eA-------l~~Glv~~vv~~~~~~~~l~~~a~~~ 233 (333)
.+|. .+.|++|.++++ .+++.+.+.++
T Consensus 213 ~eeLGga~~h~~~sG~~D~v~~d---e~~a~~~~r~~ 246 (258)
T d2a7sa1 213 MEELGGAHTHMAKSGTAHYAASG---EQDAFDYVREL 246 (258)
T ss_dssp HHHHHBHHHHHHTSCCCSEEESS---HHHHHHHHHHH
T ss_pred hhhccCHhHhhhhccccceEeCC---HHHHHHHHHHH
Confidence 7754 457999999996 34444444443
|
| >d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=0.0013 Score=57.48 Aligned_cols=138 Identities=14% Similarity=0.213 Sum_probs=86.2
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l 127 (333)
|.++-.+..=..-+++....+.+..+.+.+.+.. +-+|.++.. .|..+.+-. ...............+
T Consensus 98 v~v~a~Dftv~gGS~g~~~~~Ki~~a~e~A~~~~-lPlI~~~~s------gG~r~~e~~-----~sl~~~~~~~~~~~~~ 165 (263)
T d2f9yb1 98 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDN-CPLICFSAS------GGARMQEAL-----MSLMQMAKTSAALAKM 165 (263)
T ss_dssp CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHHT-CCEEEEEEE------SSBCGGGTH-----HHHHHHHHHHHHHHHH
T ss_pred EEEEeeeehhhccccccchhhHHhHHHHHHHHcC-CCeEEEecC------CCccccccc-----chhhcchhHHHHHHHH
Confidence 4455555555778899999999999999887654 345555443 233333311 1111122333344445
Q ss_pred hcCCCcEEEEechhhhHhhHH-HHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCC----
Q psy503 128 ESIPVPVLAVLDGSAYGGGLE-MALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV---- 202 (333)
Q Consensus 128 ~~~~kP~Iaav~G~a~GgG~~-Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~i---- 202 (333)
.....|+|+++.|+|.||+.. +++++|++++.+.+.+++... ... + ..+|+.+
T Consensus 166 ~~~~vP~I~v~~g~~~GG~aa~~~~~~d~i~~~~~s~i~~aGP--------------------~vv-e-~~~ge~~~e~~ 223 (263)
T d2f9yb1 166 QERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGP--------------------RVI-E-QTVREKLPPGF 223 (263)
T ss_dssp HHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCH--------------------HHH-H-HHHTSCCCTTT
T ss_pred HhCCCceEEEecCCcchHHHhhhhhcCceEeeecceeeeccCH--------------------HHH-h-hhcCCcCChhh
Confidence 567799999999999999875 788888888888877653221 111 1 1234444
Q ss_pred -CHHHHHHcCCcceecCC
Q psy503 203 -DSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 203 -sa~eAl~~Glv~~vv~~ 219 (333)
+++-..+.|+||.|+++
T Consensus 224 g~a~~~~~~G~iD~vv~~ 241 (263)
T d2f9yb1 224 QRSEFLIEKGAIDMIVRR 241 (263)
T ss_dssp TBHHHHGGGTCCSEECCH
T ss_pred ccHHHHHhCCCCCEEECC
Confidence 44445678999999984
|
| >d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=97.43 E-value=0.00024 Score=63.16 Aligned_cols=158 Identities=14% Similarity=0.117 Sum_probs=88.3
Q ss_pred CCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 45 ~~~v~~Itln~p~-~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
++.-..|.-|.+. +.-++++...+.+.++++.+.+.. +-+|.|.-. ++++.. ..-..+.... . ..+.+..
T Consensus 102 ~G~~v~v~a~D~t~~gGs~~~~~~~K~~r~~~lA~~~~-lP~I~l~ds-~Ga~~~-~~~e~~~~~~--~---~g~~~~~- 172 (287)
T d1pixa2 102 NGKWCVVVASDNKKLAGAWVPGQAECLLRASDTAKTLH-VPLVYVLNC-SGVKFD-EQEKVYPNRR--G---GGTPFFR- 172 (287)
T ss_dssp TTEEEEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHT-CCEEEEECC-CEECGG-GHHHHSSSTT--S---TTHHHHH-
T ss_pred ccceEEEEEeccccccccchhhHHHHHHHHHHhhhhcC-CCEEEEecC-CcccCC-cchhhccchh--h---HHHHHHH-
Confidence 4444444445444 567888999999999988877654 445555544 332221 0000111100 0 0011222
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEecccc--ccCccCChhhhhhcccccCHHHHHHH-HHcCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVET--KLAIIPGAGGTQRLPRIVGIPLAKEL-IYTGR 200 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~--~~Gl~p~~g~~~~L~r~iG~~~a~~l-lltG~ 200 (333)
...+....+|+|++|-|+|.|||...+++||++++.+++.+.+.-. --+..+ ...+....+.++ ..+|+
T Consensus 173 ~a~ls~~~VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~~Gp~vv~~~~~--------~~~~~~~~~~ei~~~~ge 244 (287)
T d1pixa2 173 NAELNQLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNP--------KGHVDLEYANEIADMVDR 244 (287)
T ss_dssp HHHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESCCCTTCCSCCS--------SSSCCHHHHHHHHHHHHT
T ss_pred HHHHhhcCCCeEEEecCCccccceeccccceeEEecCCeEEEEECHHHhcccch--------hhhhhhhhHHHHHhhhcc
Confidence 2344556799999999999999988888888888888887765221 111111 111222222222 12344
Q ss_pred CC-----CHHHH--HHcCCcceecCC
Q psy503 201 LV-----DSTEA--KSIGLVNTLTPQ 219 (333)
Q Consensus 201 ~i-----sa~eA--l~~Glv~~vv~~ 219 (333)
.+ .+.+. ..-|++|.++++
T Consensus 245 ~~~~eeLGGa~~H~~~sG~~d~v~~~ 270 (287)
T d1pixa2 245 TGKTEPPGAVDIHYTETGFMREVYAS 270 (287)
T ss_dssp TCCCCCSSBHHHHTTTSCCSCEEESS
T ss_pred cccccccccHHHhhhhcccceeecCC
Confidence 44 44443 357999999997
|
| >d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.94 E-value=0.0069 Score=52.91 Aligned_cols=156 Identities=19% Similarity=0.294 Sum_probs=101.6
Q ss_pred CCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 45 ~~~v~~Itln~p~-~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
++.-.-|--|+|. ....++.+......+.++..+.. ++-+|.|.-. ++ |..|.+- +....++...++
T Consensus 68 ~G~~vgvian~~~~~~G~~~~~~~~Ka~rfi~lc~~~-~iPlv~l~dt-pG-f~~G~~~---------E~~g~~~~ga~~ 135 (271)
T d2a7sa2 68 DGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDV-PG-FLPGTDQ---------EYNGIIRRGAKL 135 (271)
T ss_dssp SSCEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CC-BCCCHHH---------HHHCHHHHHHHH
T ss_pred CCeEEEEEeccccccCCCcCHHHHHHHHHHHHHHHHh-CCceEEeech-hh-hhhhccH---------HHhhHHHHHHHH
Confidence 5554444445554 23689999999999999988765 5677777776 44 6655332 223456777889
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHH----hCCEEEEeCCeEEeccccccCccCChhhhh-hcccccCH---------
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMAL----ACDIRVAASNVRMGLVETKLAIIPGAGGTQ-RLPRIVGI--------- 189 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal----~cD~rias~~a~f~~pe~~~Gl~p~~g~~~-~L~r~iG~--------- 189 (333)
+..+.++..|.|+.|-|.++|+|..... .+|++++.+++.++.- .+.++.. ...+.+..
T Consensus 136 ~~a~a~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~A~igvM-------gpegaa~v~~~~~l~~~~~~~~~~~ 208 (271)
T d2a7sa2 136 LYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAVM-------GASGAVGFVYRQQLAEAAANGEDID 208 (271)
T ss_dssp HHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESS-------CHHHHHHHHTTTTTTGGGTSSCCTT
T ss_pred HHHHHhCCCCeEEEEeCCccchhhhhhcccccccceEEEecceeEeec-------CHHHHHHHHHHHhhhhhhhcccchH
Confidence 9999999999999999999998754332 3688888888877642 2222222 22222210
Q ss_pred --HHHHHHHHcCCCCCHHHHHHcCCcceecCC
Q psy503 190 --PLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 190 --~~a~~llltG~~isa~eAl~~Glv~~vv~~ 219 (333)
.......+.-+.-++-.|...|++|.|+++
T Consensus 209 ~~~~~~~~e~~e~~~~p~~aa~~g~iD~VIdP 240 (271)
T d2a7sa2 209 KLRLRLQQEYEDTLVNPYVAAERGYVDAVIPP 240 (271)
T ss_dssp SSTTHHHHHHHTTTSBSHHHHHHTSSSEECCG
T ss_pred HHHHHHHHHHHHHhcCHHHHHHcCCCCeeECH
Confidence 001111122333467788889999999997
|
| >d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=96.92 E-value=0.0075 Score=52.44 Aligned_cols=156 Identities=13% Similarity=0.186 Sum_probs=100.0
Q ss_pred CCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 45 ~~~v~~Itln~p~-~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
++.-.-+--|+|. ...+++.+-.+...+.++-.+.. ++-.|.|.-. ++ |..|.+-. .....+...++
T Consensus 65 ~G~~vgvian~~~~~~G~~~~~~a~Kaa~fi~lc~~~-~iPli~l~Dt-pG-f~~G~~~E---------~~g~~~~ga~~ 132 (264)
T d1vrga2 65 QGKTVGIVANQPSVLAGVLDIDSSDKAARFIRFLDAF-NIPILTFVDT-PG-YLPGVAQE---------HGGIIRHGAKL 132 (264)
T ss_dssp TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CC-BCCCHHHH---------HTTHHHHHHHH
T ss_pred cCceEEEEeccccccccchhhhhHHHHHHHHHHHHHh-CCceEEEeec-cc-ccccHHHH---------HHhHHHHHHHH
Confidence 4443334445553 34679999999999999988765 4667777665 44 66554332 23456777889
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHH----hCCEEEEeCCeEEeccccccCccCChhhhhhccc-cc---C-HHH-HH
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMAL----ACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPR-IV---G-IPL-AK 193 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal----~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r-~i---G-~~~-a~ 193 (333)
+..+.++..|.|+.|=|.++|+|..-.. .+|++++.+++.++. ..+.++...+-+ .+ . ... ..
T Consensus 133 ~~a~a~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~a~~~v-------m~pe~aa~v~~~~~l~~~~~~~~~~~ 205 (264)
T d1vrga2 133 LYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAV-------MGPEGAANIIFKREIEASSNPEETRR 205 (264)
T ss_dssp HHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHHSSCHHHHHH
T ss_pred HHHHhcCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccceeEEe-------cCHHHhhhhhhhhhhhhhhCcHHHHH
Confidence 9999999999999999999998763322 488888888777663 232333322221 11 0 000 00
Q ss_pred H--HHHcCCCCCHHHHHHcCCcceecCC
Q psy503 194 E--LIYTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 194 ~--llltG~~isa~eAl~~Glv~~vv~~ 219 (333)
+ -.+.-+.-++-.+...|++|.|+++
T Consensus 206 ~~~~~~~e~~~~~~~aa~~g~iD~VIdP 233 (264)
T d1vrga2 206 KLIEEYKQQFANPYIAASRGYVDMVIDP 233 (264)
T ss_dssp HHHHHHHHHTSSHHHHHHTTSSSEECCG
T ss_pred HHHHHHHHHhcCHHHHHHcCCCCeeECH
Confidence 0 0111122367788899999999997
|
| >d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.58 E-value=0.0085 Score=52.06 Aligned_cols=151 Identities=17% Similarity=0.265 Sum_probs=97.6
Q ss_pred EEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRP-QARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ 126 (333)
Q Consensus 48 v~~Itln~p-~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~ 126 (333)
|++|- |+| ....+++.+......+.++..+.. ++-+|.|.-. ++ |-.|.+- +....++...+++..
T Consensus 67 vgvia-~~~~~~~G~~~~~~a~Ka~~fi~lc~~~-~iPli~l~d~-pG-f~~G~~~---------E~~g~~~~ga~~~~a 133 (263)
T d1xnya2 67 VGIVA-NQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDV-PG-FLPGVDQ---------EHDGIIRRGAKLIFA 133 (263)
T ss_dssp EEEEE-ECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CC-BCCCHHH---------HHTTHHHHHHHHHHH
T ss_pred EEEEe-cccceecCCcchhhHHHHHHHHHHHHHh-CCceEEeecc-cc-cccchhH---------HHHhHHHHHHHHHHH
Confidence 44444 444 344689999999999999988765 4667777766 44 6655433 233456777889999
Q ss_pred HhcCCCcEEEEechhhhHhhHHHHH----hCCEEEEeCCeEEeccccccCccCChhhhhhccc-cc----C-----HHHH
Q psy503 127 LESIPVPVLAVLDGSAYGGGLEMAL----ACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPR-IV----G-----IPLA 192 (333)
Q Consensus 127 l~~~~kP~Iaav~G~a~GgG~~Lal----~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r-~i----G-----~~~a 192 (333)
+.++..|.|+.|-|.++|+|..... ..|++++.+++.++. ..+.++...+-+ .+ . ....
T Consensus 134 ~a~~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a~~gv-------m~pe~aa~il~~~~~~~a~~~~~~~~~~~ 206 (263)
T d1xnya2 134 YAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAV-------MGAQGAVNILHRRTIADAGDDAEATRARL 206 (263)
T ss_dssp HHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHSCCTTCSSSHHHH
T ss_pred HHccCCCeEEEEecCccccceeccCCcccCCcEEEEcchhhhhc-------cCHHHHHHHHHHHHHhhhccchHHHHHHH
Confidence 9999999999999999998765433 368888888887763 233333332221 11 0 0000
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCC
Q psy503 193 KELIYTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 193 ~~llltG~~isa~eAl~~Glv~~vv~~ 219 (333)
.+.. .-+..++-.+...|++|.|+++
T Consensus 207 ~~~~-~~~~~~p~~aA~~g~iD~VIdP 232 (263)
T d1xnya2 207 IQEY-EDALLNPYTAAERGYVDAVIMP 232 (263)
T ss_dssp HHHH-HHHHSSSHHHHHHTSSSEECCG
T ss_pred HHHH-HHHhcCHHHHHHcccCCcccCH
Confidence 0100 0112356678888999999997
|
| >d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=96.37 E-value=0.012 Score=51.03 Aligned_cols=152 Identities=16% Similarity=0.193 Sum_probs=98.5
Q ss_pred EEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ 126 (333)
Q Consensus 48 v~~Itln~p~-~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~ 126 (333)
|++|- |+|. ...+++.+-.....+.++-.+.. ++-+|.|.-. ++ |..|.+- +....++...+++..
T Consensus 69 vgvia-n~~~~~~G~~~~~~a~Kaarfi~lc~~~-~iPlv~l~D~-pG-f~~G~~~---------E~~g~i~~ga~~~~a 135 (264)
T d1on3a2 69 VGIVA-NQPSVMSGCLDINASDKAAEFVNFCDSF-NIPLVQLVDV-PG-FLPGVQQ---------EYGGIIRHGAKMLYA 135 (264)
T ss_dssp EEEEE-ECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CC-BCCCHHH---------HHTTHHHHHHHHHHH
T ss_pred EEEEe-ccchhcccccChHHHHHHHHHHHHHHhc-CCceEEEecc-cc-ccccHHH---------HHHHHHHHHHHHHHH
Confidence 44444 4443 46789999999999999988764 5677777776 44 6666443 223456777889999
Q ss_pred HhcCCCcEEEEechhhhHhhHHHHH----hCCEEEEeCCeEEeccccccCccCChhhhhhccc-cc----CHH--HHH-H
Q psy503 127 LESIPVPVLAVLDGSAYGGGLEMAL----ACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPR-IV----GIP--LAK-E 194 (333)
Q Consensus 127 l~~~~kP~Iaav~G~a~GgG~~Lal----~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r-~i----G~~--~a~-~ 194 (333)
+.++..|.|+.|=|.++|+|..-.. ..|++++.+++.++ ..++.|+...+-+ .+ ... ... .
T Consensus 136 ~a~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A~~~-------vMg~Egaa~v~~~~el~a~~~~~~~~~~~~ 208 (264)
T d1on3a2 136 YSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIA-------VMGAEGAANVIFRKEIKAADDPDAMRAEKI 208 (264)
T ss_dssp HHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHH
T ss_pred HHcCCCCEEEEEeccccCccccccccccCChhheeeHHhhHhh-------hccHHHHHHHHHhhhhhhhhhhhhhhHHHH
Confidence 9999999999999999998764333 36777777777665 3333444333222 11 000 010 0
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCC
Q psy503 195 LIYTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 195 llltG~~isa~eAl~~Glv~~vv~~ 219 (333)
..+.-+.-++-.|...|++|.|+++
T Consensus 209 ~e~~~~~~~p~~aA~~g~iD~VIdP 233 (264)
T d1on3a2 209 EEYQNAFNTPYVAAARGQVDDVIDP 233 (264)
T ss_dssp HHHHHHHSSHHHHHHTTSSSEECCG
T ss_pred HHHHHHhcCHHHHHHcCCCCeeECH
Confidence 1111122356778889999999997
|
| >d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.30 E-value=0.003 Score=56.64 Aligned_cols=79 Identities=10% Similarity=0.059 Sum_probs=53.9
Q ss_pred CCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCC--CH---
Q psy503 130 IPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV--DS--- 204 (333)
Q Consensus 130 ~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~i--sa--- 204 (333)
-..|+|++|.|+|+|+|+-++..||++|+.+++.+.+.. ...+.. .+|+.+ +.
T Consensus 239 ~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~ltG-----------p~~l~~-----------~lG~eVy~s~~eL 296 (333)
T d1uyra1 239 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTG-----------APAINK-----------MLGREVYTSNLQL 296 (333)
T ss_dssp HHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEESSC-----------HHHHHH-----------HSSSCCCSCTHHH
T ss_pred CCCCEEEEEeCCccccceeecccccEEEEeCCceEEeeC-----------HHHHHH-----------hcCccccCChhHh
Confidence 359999999999999999999999999999987644211 112222 234444 32
Q ss_pred ---HHHHHcCCcceecCCCCChhHHHHHHHHH
Q psy503 205 ---TEAKSIGLVNTLTPQNPNQNAAYLASLRI 233 (333)
Q Consensus 205 ---~eAl~~Glv~~vv~~~~~~~~l~~~a~~~ 233 (333)
+=..+.|++|.++++ ..+..+.+++|
T Consensus 297 GG~~i~~~nGv~h~~a~d---d~eai~~i~~~ 325 (333)
T d1uyra1 297 GGTQIMYNNGVSHLTAVD---DLAGVEKIVEW 325 (333)
T ss_dssp HSHHHHHHHTSSSEEESS---HHHHHHHHHHH
T ss_pred CCHhHHhhCCCceEEeCC---HHHHHHHHHHH
Confidence 233568999999997 34444444443
|
| >d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=94.40 E-value=0.39 Score=41.82 Aligned_cols=146 Identities=12% Similarity=0.140 Sum_probs=90.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 59 ~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
.-+|+.+-.....+.++..+.. ++-+|.|.-. ++ |-.|.+- +....++...+++..+.++..|.|+.|
T Consensus 96 ~G~l~~~~a~K~~rfi~lc~~~-~iPlv~l~D~-pG-f~~g~~~---------E~~g~~r~ga~~~~a~~~~~VP~isvi 163 (299)
T d1pixa3 96 GGKLYRQGLVKMNEFVTLCARD-RLPIVWIQDT-TG-IDVGNDA---------EKAELLGLGQSLIYSIQTSHIPQFEIT 163 (299)
T ss_dssp TTEECHHHHHHHHHHHHHHHHT-TCCEEEEECC-CE-ECCSHHH---------HHTTHHHHHHHHHHHHHTCCCCEEEEE
T ss_pred CCccCHHHHHHHHHHHHHHHHc-CCeEEEEEeC-CC-cccchHH---------HhhhHHHHHHHHHHHHHhhcceeEEEE
Confidence 4668999999999999988865 4567776655 33 6666432 223355677788899999999999999
Q ss_pred chhhhHhhHHHHHh----CCEEEEeCCeEEeccccccCccCChhhhhhc-ccccCHH------------HHHHHHH-cCC
Q psy503 139 DGSAYGGGLEMALA----CDIRVAASNVRMGLVETKLAIIPGAGGTQRL-PRIVGIP------------LAKELIY-TGR 200 (333)
Q Consensus 139 ~G~a~GgG~~Lal~----cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L-~r~iG~~------------~a~~lll-tG~ 200 (333)
=|.++|+|....+. .|++++ +..|...+|..++.++...+ .+.+... +-.++.- .-+
T Consensus 164 ~r~~~G~a~~am~g~~~~~~~~~~-----~awP~aeigvMg~E~aa~vl~~~el~~~~~~~~~~~e~~e~~~~~~~~~~~ 238 (299)
T d1pixa3 164 LRKGTAAAHYVLGGPQGNDTNAFS-----IGTAATEIAVMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQAFYT 238 (299)
T ss_dssp CSEEETTHHHHTTCTTCTTTEEEE-----EECTTCEEESSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred ecccccccccccccCccCccccee-----cCCCccccccccchhhheeehhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999988654332 343321 12344445554444444332 2222100 0011110 012
Q ss_pred CCCHHHHHHcCCcceecCCCC
Q psy503 201 LVDSTEAKSIGLVNTLTPQNP 221 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~ 221 (333)
..++-.+...|+||.|+++.+
T Consensus 239 ~~sp~~aAs~~~iD~IIDP~d 259 (299)
T d1pixa3 239 KSRPKVCAELGLVDEIVDMNK 259 (299)
T ss_dssp TTSHHHHHHHTSSSEECCTTT
T ss_pred hcCHHHHHHhCCcCeeECHHH
Confidence 357788889999999999843
|
| >d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.57 E-value=0.35 Score=43.75 Aligned_cols=108 Identities=12% Similarity=0.181 Sum_probs=69.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe-
Q psy503 60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL- 138 (333)
Q Consensus 60 Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav- 138 (333)
-.|.++-.....+.+.++.+..++-+|+|.-. ++ |+.|.+-. ....++....++..+.++..|+|..|
T Consensus 108 gv~~p~sA~K~A~~i~d~cd~~~lPLi~l~D~-pG-F~~G~~~E---------~~gilr~GA~iv~A~~~~~vP~i~vI~ 176 (404)
T d1uyra2 108 QVWHPNSAFKTAQAINDFNNGEQLPMMILANW-RG-FSGGQRDM---------FNEVLKYGSFIVDALVDYKQPIIIYIP 176 (404)
T ss_dssp TCBCHHHHHHHHHHHHHHHTTSCCCEEECCCC-CC-BCC---------------CTHHHHHHHHHHHHHTCCSCEEEEEC
T ss_pred CccCchHHHHHHHHHHHhhhccccceEEeecC-Cc-ccCcHHHH---------HHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 46788889999999988877677888888776 44 88885432 22355667788999999999999999
Q ss_pred -chhhhHhhHHHHH---hCCEEEEeCCeEEeccccccCccCChhhhhhc
Q psy503 139 -DGSAYGGGLEMAL---ACDIRVAASNVRMGLVETKLAIIPGAGGTQRL 183 (333)
Q Consensus 139 -~G~a~GgG~~Lal---~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L 183 (333)
.|.+.||+..++- ..|.+ ..|..|.++.|..++.|+...+
T Consensus 177 ~~g~~~GGa~vv~~~~~~~~~~-----~~yAwP~a~~gVm~pEGav~I~ 220 (404)
T d1uyra2 177 PTGELRGGSWVVVDPTINADQM-----EMYADVNARAGVLEPQGMVGIK 220 (404)
T ss_dssp TTCEEEHHHHHTTCGGGGTTTE-----EEEEETTCEEESSCHHHHHHHH
T ss_pred CCcccchhhhhcccCccCCccc-----eEEECCccccccCChhhhhhhe
Confidence 6777776544332 11211 1244455555666666665443
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