Psyllid ID: psy5108

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-----
Protein Sequence
MAPPLYGDLGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVSSRQIFNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNVLTTEVSSNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKLNDALSLN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEEEEEEcccccEEEEEEEccccccccEEEEEEEEEEEcccccccccccEEEccHHHHHHHccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEEcccccEEEEEEEEEEEEcccccEEEEEEEEccccEEEEEEEEEcccccEEEEEEEccccccccEEEEEEEEcccEEEEEEEEEEccccEEEEEEEEEccEEEEEEEEEEEccccccEEEEEEEEEEcccEEEEEEEccccEEEEEEEEEccccEEEEEEEEEEcccccEEEEEEEEEEEccccEEEEEEcccEEEEEEEEEEEcccEEcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHcccccccEEEEEEEEcccccEEEEEEcccccccccEEEEEEEEEEEccccccccccccccEEEEHHHHccccEEEcccccccccHcHHHHHHHccccEEEEEEEEccccEEEEEEEcccccccEEEEEEEEEEEccccccEEEEEEEcccccccEEEHHccccccEEEEEEEEccccccccEEEEEEEEcccEEEEEEEcccccccEEEEEEEEEcccEEEEEEEEEEcccccccHccEEEEEccccEEEEEEEccccEEEEEEEEEEcccEEEEEEEEEEccccccEEEEEEEEEcccccEEEEEEccccEEEEEEEEEEccccEEc
Coil and Loop (DISEMBL)
mapplygdlgkhardlfskgynidvikidlktktdsgvefnsggtaqlesgkifGTLESKYKAKNyagwlcgyslkfdskdAKLKANRlslgfvgsdfvfhtnvssrqifNIDVIKIdlktktdsgvefnsggtaqlesgkifGTLESKYKAKNYagltfsekwntdnvlttevssniidgarlaantsfapqtgdktvklSGEYKNSLAAVNLEsefkslnpvisaagvlgyngwlcgyslkfdskdaKLKANRlslgfvgsdfvfhtnvddgklfggtvyqklgpkletGVQLAwssesndtkfafgckydlenqaSVRAKVnnasqiglgysqklnDALSLN
Flexible Loop (DISEMBL)
mapplygdlGKHARDLFSKGYNIDVIKIDLKTktdsgvefnsggtaqlesgkIFGTLESKYKAKNYAGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHtnvssrqifniDVIKIDLKTKTDsgvefnsggtaqlesgkiFGTLESKYKAKNYAGLtfsekwntdnVLTTEVSSNIIDGArlaantsfapqtgdKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNnasqiglgysqklndalsln
Low Complexity Region (SEG)
MAPPLYGDLGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVSSRQIFNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNVLTTEVSSNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKLNDALSLN
Disordered region (IsUnstruct)
********LGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVSSRQIFNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNVLTTEVSSNIIDGARLAANTSFA*******VKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKV*****I***************
Disordered Region (DISOPRED)
*APPLYGDLGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGG***********TLESKYKAKNYAGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVSSRQIFNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNVLTTEVSSNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKLNDALSL*
Disordered Region (DISEMBL)
MAPPLYGDLGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVSSRQIFNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNVLTTEVSSNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKLNDALSLN
Disordered Region (DISPRO)
*APPLYGDLGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVSSRQIFNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNVLTTEVSSNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKLNDALSLN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPPLYGDLGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVSSRQIFNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNVLTTEVSSNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKLNDALSLN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	345	2.2.26 [Sep-21-2011]
Q94920	282	Voltage-dependent anion-s	yes	N/A	0.689	0.843	0.493	1e-62
P81004	282	Voltage-dependent anion-s	N/A	N/A	0.692	0.847	0.447	1e-56
P82013	282	Voltage-dependent anion-s	yes	N/A	0.692	0.847	0.455	1e-56
Q9MZ15	294	Voltage-dependent anion-s	yes	N/A	0.692	0.812	0.451	3e-56
P45880	294	Voltage-dependent anion-s	yes	N/A	0.692	0.812	0.451	4e-56
P68003	294	Voltage-dependent anion-s	yes	N/A	0.692	0.812	0.451	4e-56
P68002	294	Voltage-dependent anion-s	yes	N/A	0.692	0.812	0.451	4e-56
Q9Y277	283	Voltage-dependent anion-s	no	N/A	0.692	0.844	0.451	2e-54
Q60930	295	Voltage-dependent anion-s	yes	N/A	0.692	0.810	0.439	2e-54
P81155	295	Voltage-dependent anion-s	yes	N/A	0.692	0.810	0.439	2e-54

>sp|Q94920|VDAC_DROME Voltage-dependent anion-selective channel OS=Drosophila melanogaster GN=porin PE=1 SV=3

 Score =  240 bits (612), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 121/245 (49%), Positives = 169/245 (68%), Gaps = 7/245 (2%)

Query: 106 SRQIF----NIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFS 161
           +R IF    N  + K+DLKTKT SG+EFN+ G +  ESGK+FG+LE+KYK K+Y GLT +
Sbjct: 13  ARDIFSKGYNFGLWKLDLKTKTSSGIEFNTAGHSNQESGKVFGSLETKYKVKDY-GLTLT 71

Query: 162 EKWNTDNVLTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFK 219
           EKWNTDN L TEV+    +++G +L+   +FAPQ+G+K  K    Y +     + +    
Sbjct: 72  EKWNTDNTLFTEVAVQDQLLEGLKLSLEGNFAPQSGNKNGKFKVAYGHENVKADSDVNID 131

Query: 220 SLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGG 279
              P+I+A+ VLGY GWL GY   FD++ +KL  N  +LG+   DFV HT V+DG+ F G
Sbjct: 132 LKGPLINASAVLGYQGWLAGYQTAFDTQQSKLTTNNFALGYTTKDFVLHTAVNDGQEFSG 191

Query: 280 TVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKLN 339
           +++Q+   KL+ GVQL+W+S +++TKFA G KY L++ ASVRAKVNNASQ+GLGY QKL 
Sbjct: 192 SIFQRTSDKLDVGVQLSWASGTSNTKFAIGAKYQLDDDASVRAKVNNASQVGLGYQQKLR 251

Query: 340 DALSL 344
           D ++L
Sbjct: 252 DGVTL 256

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules.
Drosophila melanogaster (taxid: 7227)

>sp|P81004|VDAC2_XENLA Voltage-dependent anion-selective channel protein 2 OS=Xenopus laevis GN=vdac2 PE=1 SV=1

 Score =  220 bits (561), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 110/246 (44%), Positives = 159/246 (64%), Gaps = 7/246 (2%)

Query: 105 SSRQIFN----IDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTF 160
           S+R IFN      ++K+D+KTK+ +GVEF + GT+  +SGK+ G+LE+KYK   Y GLTF
Sbjct: 12  SARDIFNKGYGFGLVKLDVKTKSATGVEFTTSGTSNTDSGKVNGSLETKYKWGEY-GLTF 70

Query: 161 SEKWNTDNVLTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEF 218
           +EKWNTDN L TE++    I  G +L  +T+F+P TG K+ K+   YK     +  + +F
Sbjct: 71  TEKWNTDNTLGTEIAIEDQIAKGLKLTFDTTFSPNTGKKSGKVKAAYKQEYVNLGCDVDF 130

Query: 219 KSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFG 278
               P I  + V+GY GWL GY + FDS  +KL  N  ++G+   DF  HTNV+DG  F 
Sbjct: 131 DFAGPAIHGSAVVGYEGWLAGYQMTFDSAKSKLTKNNFAVGYKTGDFQLHTNVNDGSEFA 190

Query: 279 GTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKL 338
           G++YQK+  K+ET V LAW+S +N T+F    KY L++ A++ AKVNN+S +G+GY+Q L
Sbjct: 191 GSIYQKVSDKMETAVNLAWTSGNNSTRFGIAAKYQLDSHAAISAKVNNSSLVGVGYTQTL 250

Query: 339 NDALSL 344
              + L
Sbjct: 251 RPGVKL 256

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Xenopus laevis (taxid: 8355)

>sp|P82013|VDAC2_MELGA Voltage-dependent anion-selective channel protein 2 OS=Meleagris gallopavo GN=VDAC2 PE=1 SV=1

 Score =  220 bits (560), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 112/246 (45%), Positives = 158/246 (64%), Gaps = 7/246 (2%)

Query: 105 SSRQIFN----IDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTF 160
           S+R IFN      ++K+D+KTK+ SGVEF + G++  ++GK+ G+LE+KYK   Y GLTF
Sbjct: 12  SARDIFNKGYGFGLVKLDVKTKSASGVEFTTSGSSNTDTGKVNGSLETKYKWAEY-GLTF 70

Query: 161 SEKWNTDNVLTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEF 218
           +EKWNTDN L TE++    I  G +L  +T+F+P TG K+ K+   YK     +  + +F
Sbjct: 71  TEKWNTDNTLGTEIAIEDQIAKGLKLTFDTTFSPNTGKKSGKIKSAYKRECLNLGCDVDF 130

Query: 219 KSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFG 278
               P I  + V GY GWL GY + FDS  +KL  N  S+G+   DF  HTNV+DG  FG
Sbjct: 131 DFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFSVGYKTGDFQLHTNVNDGSEFG 190

Query: 279 GTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKL 338
           G++YQK+   LET V LAW++ SN T+F    KY L++ AS+ AKVNN+S +G+GY+Q L
Sbjct: 191 GSIYQKVSDNLETAVNLAWTAGSNSTRFGIAAKYKLDSTASISAKVNNSSLVGVGYTQTL 250

Query: 339 NDALSL 344
              + L
Sbjct: 251 RPGVKL 256

Forms a channel through the cell membrane that allows diffusion from small hydrophilic molecules.

Meleagris gallopavo (taxid: 9103)

>sp|Q9MZ15|VDAC2_PIG Voltage-dependent anion-selective channel protein 2 OS=Sus scrofa GN=VDAC2 PE=2 SV=1

 Score =  219 bits (557), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 111/246 (45%), Positives = 158/246 (64%), Gaps = 7/246 (2%)

Query: 105 SSRQIFN----IDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTF 160
           ++R IFN      ++K+D+KTK+ SGVEF++ G++  ++GK+ GTLE+KYK   Y GLTF
Sbjct: 24  AARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLETKYKWCEY-GLTF 82

Query: 161 SEKWNTDNVLTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEF 218
           +EKWNTDN L TE++    I  G +L  +T+F+P TG K+ K+   YK     +  + +F
Sbjct: 83  TEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKRECVNLGCDVDF 142

Query: 219 KSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFG 278
               P I  + V GY GWL GY + FDS  +KL  N  ++G+   DF  HTNV+DG  FG
Sbjct: 143 DFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQLHTNVNDGTEFG 202

Query: 279 GTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKL 338
           G++YQK+   L+T V LAW+S +N T+F    KY L+  AS+ AKVNN+S IG+GY+Q L
Sbjct: 203 GSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTL 262

Query: 339 NDALSL 344
              + L
Sbjct: 263 RPGVKL 268

Forms a channel through the cell membrane that allows diffusion from small hydrophilic molecules.

Sus scrofa (taxid: 9823)

>sp|P45880|VDAC2_HUMAN Voltage-dependent anion-selective channel protein 2 OS=Homo sapiens GN=VDAC2 PE=1 SV=2

 Score =  218 bits (556), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 111/246 (45%), Positives = 158/246 (64%), Gaps = 7/246 (2%)

Query: 105 SSRQIFN----IDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTF 160
           ++R IFN      ++K+D+KTK+ SGVEF++ G++  ++GK+ GTLE+KYK   Y GLTF
Sbjct: 24  AARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLETKYKWCEY-GLTF 82

Query: 161 SEKWNTDNVLTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEF 218
           +EKWNTDN L TE++    I  G +L  +T+F+P TG K+ K+   YK     +  + +F
Sbjct: 83  TEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKRECINLGCDVDF 142

Query: 219 KSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFG 278
               P I  + V GY GWL GY + FDS  +KL  N  ++G+   DF  HTNV+DG  FG
Sbjct: 143 DFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQLHTNVNDGTEFG 202

Query: 279 GTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKL 338
           G++YQK+   L+T V LAW+S +N T+F    KY L+  AS+ AKVNN+S IG+GY+Q L
Sbjct: 203 GSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTL 262

Query: 339 NDALSL 344
              + L
Sbjct: 263 RPGVKL 268

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Homo sapiens (taxid: 9606)

>sp|P68003|VDAC2_RABIT Voltage-dependent anion-selective channel protein 2 OS=Oryctolagus cuniculus GN=VDAC2 PE=2 SV=1

 Score =  218 bits (556), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 111/246 (45%), Positives = 158/246 (64%), Gaps = 7/246 (2%)

Query: 105 SSRQIFN----IDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTF 160
           ++R IFN      ++K+D+KTK+ SGVEF++ G++  ++GK+ GTLE+KYK   Y GLTF
Sbjct: 24  AARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLETKYKWCEY-GLTF 82

Query: 161 SEKWNTDNVLTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEF 218
           +EKWNTDN L TE++    I  G +L  +T+F+P TG K+ K+   YK     +  + +F
Sbjct: 83  TEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKRECINLGCDVDF 142

Query: 219 KSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFG 278
               P I  + V GY GWL GY + FDS  +KL  N  ++G+   DF  HTNV+DG  FG
Sbjct: 143 DFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQLHTNVNDGTEFG 202

Query: 279 GTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKL 338
           G++YQK+   L+T V LAW+S +N T+F    KY L+  AS+ AKVNN+S IG+GY+Q L
Sbjct: 203 GSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTL 262

Query: 339 NDALSL 344
              + L
Sbjct: 263 RPGVKL 268

Forms a channel through the cell membrane that allows diffusion from small hydrophilic molecules.

Oryctolagus cuniculus (taxid: 9986)

>sp|P68002|VDAC2_BOVIN Voltage-dependent anion-selective channel protein 2 OS=Bos taurus GN=VDAC2 PE=2 SV=2

 Score =  218 bits (556), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 111/246 (45%), Positives = 158/246 (64%), Gaps = 7/246 (2%)

Query: 105 SSRQIFN----IDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTF 160
           ++R IFN      ++K+D+KTK+ SGVEF++ G++  ++GK+ GTLE+KYK   Y GLTF
Sbjct: 24  AARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLETKYKWCEY-GLTF 82

Query: 161 SEKWNTDNVLTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEF 218
           +EKWNTDN L TE++    I  G +L  +T+F+P TG K+ K+   YK     +  + +F
Sbjct: 83  TEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKRECINLGCDVDF 142

Query: 219 KSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFG 278
               P I  + V GY GWL GY + FDS  +KL  N  ++G+   DF  HTNV+DG  FG
Sbjct: 143 DFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQLHTNVNDGTEFG 202

Query: 279 GTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKL 338
           G++YQK+   L+T V LAW+S +N T+F    KY L+  AS+ AKVNN+S IG+GY+Q L
Sbjct: 203 GSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTL 262

Query: 339 NDALSL 344
              + L
Sbjct: 263 RPGVKL 268

Forms a channel through the cell membrane that allows diffusion from small hydrophilic molecules.

Bos taurus (taxid: 9913)

>sp|Q9Y277|VDAC3_HUMAN Voltage-dependent anion-selective channel protein 3 OS=Homo sapiens GN=VDAC3 PE=1 SV=1

 Score =  213 bits (542), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 111/246 (45%), Positives = 157/246 (63%), Gaps = 7/246 (2%)

Query: 105 SSRQIFN----IDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTF 160
           +++ +FN      ++KIDLKTK+ SGVEF++ G A  ++GK  G LE+KYK  NY GLTF
Sbjct: 13  AAKDVFNKGYGFGMVKIDLKTKSCSGVEFSTSGHAYTDTGKASGNLETKYKVCNY-GLTF 71

Query: 161 SEKWNTDNVLTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEF 218
           ++KWNTDN L TE+S  + + +G +L  +T F P TG K+ KL   YK    +V    + 
Sbjct: 72  TQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYKRDCFSVGSNVDI 131

Query: 219 KSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFG 278
               P I    VL + GWL GY + FD+  +KL  N  +LG+  +DF  HT+V+DG  FG
Sbjct: 132 DFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQLHTHVNDGTEFG 191

Query: 279 GTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKL 338
           G++YQK+  K+ET + LAW++ SN+T+F    KY L+ + S+ AKVNNAS IGLGY+Q L
Sbjct: 192 GSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYMLDCRTSLSAKVNNASLIGLGYTQTL 251

Query: 339 NDALSL 344
              + L
Sbjct: 252 RPGVKL 257

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules.

Homo sapiens (taxid: 9606)

>sp|Q60930|VDAC2_MOUSE Voltage-dependent anion-selective channel protein 2 OS=Mus musculus GN=Vdac2 PE=1 SV=2

 Score =  213 bits (541), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 108/246 (43%), Positives = 157/246 (63%), Gaps = 7/246 (2%)

Query: 105 SSRQIFN----IDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTF 160
           ++R IFN      ++K+D+KTK+ SGVEF++ G++  ++GK+ GTLE+KYK   Y GLTF
Sbjct: 25  AARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVSGTLETKYKWCEY-GLTF 83

Query: 161 SEKWNTDNVLTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEF 218
           +EKWNTDN L TE++    I  G +L  +T+F+P TG K+ K+   YK     +  + +F
Sbjct: 84  TEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSAYKRECINLGCDVDF 143

Query: 219 KSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFG 278
               P I  + V GY GWL GY + FDS  +KL  +  ++G+   DF  HTNV++G  FG
Sbjct: 144 DFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRSNFAVGYRTGDFQLHTNVNNGTEFG 203

Query: 279 GTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKL 338
           G++YQK+    +T V LAW+S +N T+F    KY L+  AS+ AKVNN+S IG+GY+Q L
Sbjct: 204 GSIYQKVCEDFDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTL 263

Query: 339 NDALSL 344
              + L
Sbjct: 264 RPGVKL 269

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Mus musculus (taxid: 10090)

>sp|P81155|VDAC2_RAT Voltage-dependent anion-selective channel protein 2 OS=Rattus norvegicus GN=Vdac2 PE=1 SV=2

 Score =  213 bits (541), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 108/246 (43%), Positives = 157/246 (63%), Gaps = 7/246 (2%)

Query: 105 SSRQIFN----IDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTF 160
           ++R IFN      ++K+D+KTK+ SGVEF++ G++  ++GK+ GTLE+KYK   Y GLTF
Sbjct: 25  AARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVSGTLETKYKWCEY-GLTF 83

Query: 161 SEKWNTDNVLTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEF 218
           +EKWNTDN L TE++    I  G +L  +T+F+P TG K+ K+   YK     +  + +F
Sbjct: 84  TEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSAYKRECINLGCDVDF 143

Query: 219 KSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFG 278
               P I  + V GY GWL GY + FDS  +KL  +  ++G+   DF  HTNV++G  FG
Sbjct: 144 DFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRSNFAVGYRTGDFQLHTNVNNGTEFG 203

Query: 279 GTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKL 338
           G++YQK+    +T V LAW+S +N T+F    KY L+  AS+ AKVNN+S IG+GY+Q L
Sbjct: 204 GSIYQKVCEDFDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTL 263

Query: 339 NDALSL 344
              + L
Sbjct: 264 RPGVKL 269

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	345
46561750	281	putative mitochondrial porin [Homalodisc	0.692	0.850	0.542	1e-72
90820036	281	putative mitochondrial porin [Graphoceph	0.678	0.832	0.550	2e-72
91088623	282	PREDICTED: similar to voltage-dependent	0.678	0.829	0.544	4e-71
91088621	347	PREDICTED: similar to voltage-dependent	0.678	0.674	0.544	5e-71
270012285	350	hypothetical protein TcasGA2_TC006408 [T	0.678	0.668	0.537	2e-69
451899214	282	mitochondrial voltage-dependent anion ch	0.678	0.829	0.510	2e-65
157124666	282	voltage-dependent anion-selective channe	0.689	0.843	0.514	2e-64
170029514	282	voltage-dependent anion-selective channe	0.689	0.843	0.510	2e-64
321466115	281	hypothetical protein DAPPUDRAFT_231133 [	0.689	0.846	0.491	7e-63
341573647	282	voltage-dependent anion channel [Sitophi	0.678	0.829	0.510	2e-62

>gi|46561750|gb|AAT01080.1| putative mitochondrial porin [Homalodisca vitripennis]

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 133/245 (54%), Positives = 187/245 (76%), Gaps = 6/245 (2%)

Query: 105 SSRQIF----NIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTF 160
           S+R +F    +  + K+D+KTKT SGVEF++GG +  E+GK+FGTLE+KYK K+Y G+TF
Sbjct: 12  SARDVFGKGYHFGLWKLDVKTKTSSGVEFSTGGVSNQETGKVFGTLETKYKLKDY-GVTF 70

Query: 161 SEKWNTDNVLTTEVSS-NIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFK 219
           +EKWNTDNVL TEVS+ + + G +++ +TSF PQTGDK++K   E++N   +VN + +FK
Sbjct: 71  TEKWNTDNVLVTEVSAQDFMKGVKVSLDTSFKPQTGDKSLKAKTEFRNQTVSVNCDLDFK 130

Query: 220 SLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGG 279
           +  PV++AA VLGYNGWL GYS KFDS+ +K+  N  +LG+   D VFHT+VD+G+ FGG
Sbjct: 131 AGAPVVNAAAVLGYNGWLAGYSTKFDSQKSKITGNNFALGYAAGDLVFHTSVDNGQEFGG 190

Query: 280 TVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKLN 339
           ++Y K+ P  ET V LAWS+ +NDT+F  GCKY+L++  +VRAKVNNASQIGL YSQKL 
Sbjct: 191 SIYHKVNPNFETAVNLAWSAGNNDTRFGIGCKYNLDHDTAVRAKVNNASQIGLSYSQKLR 250

Query: 340 DALSL 344
           + +++
Sbjct: 251 EGVTI 255

Source: Homalodisca vitripennis

Species: Homalodisca vitripennis

Genus: Homalodisca

Family: Cicadellidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|90820036|gb|ABD98775.1| putative mitochondrial porin [Graphocephala atropunctata]

 Score =  278 bits (712), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 130/236 (55%), Positives = 184/236 (77%), Gaps = 2/236 (0%)

Query: 110 FNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNV 169
           ++  + K+D+KTKT SGVEF++GG +  E+GK+FGTLE+KYK K+Y G+TF+EKWNTDNV
Sbjct: 21  YHFGLWKLDVKTKTSSGVEFSTGGVSNQETGKVFGTLETKYKLKDY-GVTFTEKWNTDNV 79

Query: 170 LTTEVSS-NIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAA 228
           L TEVS+ + + G +++ +TSF PQTGDK++K   E++N  A+VN + +FK+  PVI+AA
Sbjct: 80  LVTEVSAQDFMKGVKVSLDTSFKPQTGDKSLKAKTEFRNQTASVNCDLDFKAGAPVINAA 139

Query: 229 GVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGPK 288
            VLGYNGWL GY+ KFD++ +K+  N  +LG+   D VFHT+VD+G+ FGG++Y K+ P 
Sbjct: 140 AVLGYNGWLAGYTTKFDAQKSKITGNSFALGYAAGDLVFHTSVDNGQEFGGSIYHKVNPN 199

Query: 289 LETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKLNDALSL 344
            ET V LAWS+ +NDT+F  GCKY+L++  +VRAKVNNASQIGL YSQKL + +++
Sbjct: 200 FETAVNLAWSAGNNDTRFGIGCKYNLDHDTAVRAKVNNASQIGLSYSQKLREGVTI 255

Source: Graphocephala atropunctata

Species: Graphocephala atropunctata

Genus: Graphocephala

Family: Cicadellidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91088623|ref|XP_976150.1| PREDICTED: similar to voltage-dependent anion-selective channel isoform 2 [Tribolium castaneum]

 Score =  274 bits (701), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 129/237 (54%), Positives = 176/237 (74%), Gaps = 3/237 (1%)

Query: 110 FNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNV 169
           ++  +IK+D KTKT SGVEFN+GG +  ESGK+FG+LE+KYK K Y GLTFSEKWNTDN 
Sbjct: 21  YHFGLIKLDCKTKTGSGVEFNTGGVSNQESGKVFGSLETKYKVKEY-GLTFSEKWNTDNT 79

Query: 170 LTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISA 227
           L TEV+    ++ G +L+++ +F+PQTG K+ ++   + N   A+N + +  S  P+I A
Sbjct: 80  LATEVAIQDQLLKGLKLSSDLTFSPQTGSKSARVKTAFTNDRVALNCDVDLDSSGPLIQA 139

Query: 228 AGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGP 287
           A V+G+ GWL GY   FD++ +KL  N  +LGF   DF+ HTNVDDG+ FGG++YQKL P
Sbjct: 140 AAVVGHQGWLAGYQTAFDTQKSKLTKNNFALGFSTGDFILHTNVDDGQEFGGSIYQKLSP 199

Query: 288 KLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKLNDALSL 344
           KLETG+QLAWS+ SN+TKF  G KYDL+  A++RAKVNN+SQIGLGY Q+L + ++L
Sbjct: 200 KLETGIQLAWSAGSNNTKFGIGAKYDLDQDAAIRAKVNNSSQIGLGYQQRLREGVTL 256

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91088621|ref|XP_967480.1| PREDICTED: similar to voltage-dependent anion-selective channel isoform 1 [Tribolium castaneum]

 Score =  274 bits (700), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 129/237 (54%), Positives = 176/237 (74%), Gaps = 3/237 (1%)

Query: 110 FNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNV 169
           ++  +IK+D KTKT SGVEFN+GG +  ESGK+FG+LE+KYK K Y GLTFSEKWNTDN 
Sbjct: 86  YHFGLIKLDCKTKTGSGVEFNTGGVSNQESGKVFGSLETKYKVKEY-GLTFSEKWNTDNT 144

Query: 170 LTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISA 227
           L TEV+    ++ G +L+++ +F+PQTG K+ ++   + N   A+N + +  S  P+I A
Sbjct: 145 LATEVAIQDQLLKGLKLSSDLTFSPQTGSKSARVKTAFTNDRVALNCDVDLDSSGPLIQA 204

Query: 228 AGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGP 287
           A V+G+ GWL GY   FD++ +KL  N  +LGF   DF+ HTNVDDG+ FGG++YQKL P
Sbjct: 205 AAVVGHQGWLAGYQTAFDTQKSKLTKNNFALGFSTGDFILHTNVDDGQEFGGSIYQKLSP 264

Query: 288 KLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKLNDALSL 344
           KLETG+QLAWS+ SN+TKF  G KYDL+  A++RAKVNN+SQIGLGY Q+L + ++L
Sbjct: 265 KLETGIQLAWSAGSNNTKFGIGAKYDLDQDAAIRAKVNNSSQIGLGYQQRLREGVTL 321

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270012285|gb|EFA08733.1| hypothetical protein TcasGA2_TC006408 [Tribolium castaneum]

 Score =  268 bits (686), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 129/240 (53%), Positives = 176/240 (73%), Gaps = 6/240 (2%)

Query: 110 FNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNV 169
           ++  +IK+D KTKT SGVEFN+GG +  ESGK+FG+LE+KYK K Y GLTFSEKWNTDN 
Sbjct: 86  YHFGLIKLDCKTKTGSGVEFNTGGVSNQESGKVFGSLETKYKVKEY-GLTFSEKWNTDNT 144

Query: 170 LTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISA 227
           L TEV+    ++ G +L+++ +F+PQTG K+ ++   + N   A+N + +  S  P+I A
Sbjct: 145 LATEVAIQDQLLKGLKLSSDLTFSPQTGSKSARVKTAFTNDRVALNCDVDLDSSGPLIQA 204

Query: 228 AGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVD---DGKLFGGTVYQK 284
           A V+G+ GWL GY   FD++ +KL  N  +LGF   DF+ HTNVD   DG+ FGG++YQK
Sbjct: 205 AAVVGHQGWLAGYQTAFDTQKSKLTKNNFALGFSTGDFILHTNVDHSDDGQEFGGSIYQK 264

Query: 285 LGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKLNDALSL 344
           L PKLETG+QLAWS+ SN+TKF  G KYDL+  A++RAKVNN+SQIGLGY Q+L + ++L
Sbjct: 265 LSPKLETGIQLAWSAGSNNTKFGIGAKYDLDQDAAIRAKVNNSSQIGLGYQQRLREGVTL 324

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|451899214|gb|AGF80275.1| mitochondrial voltage-dependent anion channel [Locusta migratoria]

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 121/237 (51%), Positives = 174/237 (73%), Gaps = 3/237 (1%)

Query: 110 FNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNV 169
           ++  +IK+D KTKT SGVEF++GG +  ++GK+FG+LE+KY  K Y GLTFSEKWNTDN 
Sbjct: 21  YHFGLIKLDCKTKTASGVEFSTGGYSNQDTGKLFGSLETKYGIKEY-GLTFSEKWNTDNT 79

Query: 170 LTTEVSSN--IIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISA 227
           L  E+S +  +  G ++A +T+F PQTG++T  L  E+KN + +VN++ +     P I A
Sbjct: 80  LGAEISVDNYLAKGLKIAFDTTFEPQTGNRTGCLKTEFKNDMCSVNMDVDLDFAGPNIKA 139

Query: 228 AGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGP 287
           A VLGYNGWL GY   FDS+ +K+  N  +LG+  SDF+ HTNV+DG+ +GG++YQK+  
Sbjct: 140 ATVLGYNGWLAGYQGAFDSQKSKITKNNFALGYSASDFILHTNVNDGQEYGGSIYQKVSN 199

Query: 288 KLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKLNDALSL 344
           +LE G+QLAW S SN+T F  GCKY+++  + +RAKVNNASQIG+GY+QK+ D +++
Sbjct: 200 QLEAGIQLAWFSGSNETNFGIGCKYNIDKDSCIRAKVNNASQIGIGYAQKIRDGITV 256

Source: Locusta migratoria

Species: Locusta migratoria

Genus: Locusta

Family: Acrididae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157124666|ref|XP_001654143.1| voltage-dependent anion-selective channel [Aedes aegypti] gi|94468842|gb|ABF18270.1| mitochondrial porin [Aedes aegypti] gi|108882772|gb|EAT46997.1| AAEL001872-PA [Aedes aegypti] gi|129563863|gb|ABO31104.1| voltage-dependent anion channel [Aedes aegypti]

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 126/245 (51%), Positives = 171/245 (69%), Gaps = 7/245 (2%)

Query: 106 SRQIFN----IDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFS 161
           +R +FN      + K+D+KTKT+SGVEFN+ G++  ++GK+FG+LE+KYK K Y GL FS
Sbjct: 13  ARDVFNKGYHFGLWKLDVKTKTNSGVEFNTSGSSNQDNGKVFGSLETKYKVKEY-GLNFS 71

Query: 162 EKWNTDNVLTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFK 219
           EKWNTDN LT+EVS  + ++ G +L+ + SFAPQTG KT +    Y +    V+ +    
Sbjct: 72  EKWNTDNTLTSEVSVENQLVKGLKLSFDGSFAPQTGSKTGRFKTAYSHDKVRVDADVNVD 131

Query: 220 SLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGG 279
              P+++A+GV  Y GWL GY + FDS+ +K+ AN  +LG+   DFV HTNV+DG+ FGG
Sbjct: 132 LAGPLVNASGVFNYQGWLAGYQVAFDSQKSKVTANNFALGYSTGDFVLHTNVNDGREFGG 191

Query: 280 TVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKLN 339
            +YQ+   +LET VQL+W+S SN TKF  G KYDL+  A VRAKVNN SQIGLGY QKL 
Sbjct: 192 LIYQRCNDRLETAVQLSWASGSNATKFGLGAKYDLDKDACVRAKVNNQSQIGLGYQQKLR 251

Query: 340 DALSL 344
           D ++L
Sbjct: 252 DGVTL 256

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170029514|ref|XP_001842637.1| voltage-dependent anion-selective channel [Culex quinquefasciatus] gi|167863221|gb|EDS26604.1| voltage-dependent anion-selective channel [Culex quinquefasciatus]

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 125/245 (51%), Positives = 170/245 (69%), Gaps = 7/245 (2%)

Query: 106 SRQIFN----IDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFS 161
           +R +FN      + K+D+KTKT SGVEFN+ G +  ++GK+FG+LE+KYK K Y GL FS
Sbjct: 13  ARDVFNKGYHFGLWKLDVKTKTSSGVEFNTAGHSNQDNGKVFGSLETKYKVKEY-GLNFS 71

Query: 162 EKWNTDNVLTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFK 219
           EKWNTDN LT+EVS  + ++ G +L+ + SFAPQTG KT +    Y +    V+ +    
Sbjct: 72  EKWNTDNTLTSEVSIENQLVKGLKLSFDGSFAPQTGSKTGRFKTAYSHDKVRVDADVNVD 131

Query: 220 SLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGG 279
              P+++A+GV GY GWL GY + FDS+ +K+ AN  ++G+   DF+ HTNV+DG+ FGG
Sbjct: 132 LAGPLVNASGVFGYQGWLAGYQVAFDSQKSKVTANNFAVGYSTGDFILHTNVNDGREFGG 191

Query: 280 TVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKLN 339
            +YQ+   +LET VQL+W+S SN TKF  G KYDL+  A VRAKVNN SQIGLGY QKL 
Sbjct: 192 LIYQRCNDRLETAVQLSWASGSNATKFGLGAKYDLDKDACVRAKVNNQSQIGLGYQQKLR 251

Query: 340 DALSL 344
           D ++L
Sbjct: 252 DGITL 256

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321466115|gb|EFX77112.1| hypothetical protein DAPPUDRAFT_231133 [Daphnia pulex]

 Score =  247 bits (630), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 121/246 (49%), Positives = 167/246 (67%), Gaps = 8/246 (3%)

Query: 105 SSRQIF----NIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTF 160
           SSR +F    +  ++K++ KTKT +GVEF +GG++ +ESGK+ G LE+KYK   Y GLTF
Sbjct: 12  SSRDVFGKGYHFSLLKLECKTKTSNGVEFTTGGSSNIESGKVVGNLETKYKIGEY-GLTF 70

Query: 161 SEKWNTDNVLTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEF 218
           +EKWNTDN L TE++    I  G +L  +++FAPQTG KT  +  EYK+  A +N + + 
Sbjct: 71  TEKWNTDNTLGTEIAIQDKIAQGLKLTFDSTFAPQTGKKTGIVKAEYKHDTATLNADVDL 130

Query: 219 KSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFG 278
               P I+ A V GY GWL GY + FD   ++L  N  S+ +   DF  HTNV+DG+ FG
Sbjct: 131 NG-GPTINGAAVCGYLGWLAGYQMSFDMSKSQLTRNNFSIAYAAKDFALHTNVNDGQEFG 189

Query: 279 GTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKL 338
           G +YQK+ P LETGVQL+W++ SN T+F  GCKY L+N ++VRAK+NN SQ+GLGY QKL
Sbjct: 190 GALYQKVNPNLETGVQLSWTAGSNATRFGLGCKYQLDNDSAVRAKINNVSQLGLGYQQKL 249

Query: 339 NDALSL 344
              ++L
Sbjct: 250 RQGVTL 255

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|341573647|emb|CCB63204.2| voltage-dependent anion channel [Sitophilus oryzae]

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 121/237 (51%), Positives = 163/237 (68%), Gaps = 3/237 (1%)

Query: 110 FNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNV 169
           ++  +IK+D KTK+ SGVEF++GGT+  ESGK+FG+LE+KY  K Y GLTF+EKWNTDN 
Sbjct: 21  YHFGLIKLDCKTKSSSGVEFSTGGTSNQESGKVFGSLETKYNVKEY-GLTFTEKWNTDNT 79

Query: 170 LTTE--VSSNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISA 227
           L+T+  V    ++G +L A   FAP TG KT  +   ++N   A+N ++E+    P +  
Sbjct: 80  LSTDFTVKDQGLEGLKLGACLDFAPHTGQKTGNVKAAFQNPQVAINADAEYSPEGPKVLG 139

Query: 228 AGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGP 287
           + VLGY GWL G    +D  + KL  N  +LGF   DF  HTNVDDG+ FGG++YQK+ P
Sbjct: 140 SVVLGYQGWLAGAQAGYDINNNKLTKNNFALGFSSGDFTLHTNVDDGQEFGGSIYQKINP 199

Query: 288 KLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKLNDALSL 344
            LETG+ L WSS S++TKF  G KYDL+  A+VR KVNNASQIGLGY Q+L + ++L
Sbjct: 200 SLETGISLNWSSGSSNTKFGIGAKYDLDKDAAVRFKVNNASQIGLGYQQRLREGVTL 256

Source: Sitophilus oryzae

Species: Sitophilus oryzae

Genus: Sitophilus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	345
FB|FBgn0004363	282	porin "porin" [Drosophila mela	0.678	0.829	0.497	6.2e-62
ZFIN|ZDB-GENE-040426-954	281	zgc:56235 "zgc:56235" [Danio r	0.672	0.825	0.485	9.3e-59
ZFIN|ZDB-GENE-040426-2380	318	vdac3 "voltage-dependent anion	0.678	0.735	0.476	1.5e-58
UNIPROTKB|F1P0E4	284	VDAC2 "Uncharacterized protein	0.692	0.841	0.455	7.5e-57
UNIPROTKB|Q9I9D1	283	VDAC2 "Uncharacterized protein	0.692	0.844	0.455	7.5e-57
ZFIN|ZDB-GENE-030131-845	283	vdac2 "voltage-dependent anion	0.692	0.844	0.443	9.6e-57
UNIPROTKB|Q9MZ15	294	VDAC2 "Voltage-dependent anion	0.692	0.812	0.451	1.8e-55
UNIPROTKB|P68002	294	VDAC2 "Voltage-dependent anion	0.692	0.812	0.451	2.3e-55
UNIPROTKB|E2R948	294	VDAC2 "Uncharacterized protein	0.692	0.812	0.451	2.3e-55
UNIPROTKB|P45880	294	VDAC2 "Voltage-dependent anion	0.692	0.812	0.451	2.3e-55

FB|FBgn0004363 porin "porin" [Drosophila melanogaster (taxid:7227)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 118/237 (49%), Positives = 166/237 (70%)

Query:   110 FNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNV 169
             +N  + K+DLKTKT SG+EFN+ G +  ESGK+FG+LE+KYK K+Y GLT +EKWNTDN 
Sbjct:    21 YNFGLWKLDLKTKTSSGIEFNTAGHSNQESGKVFGSLETKYKVKDY-GLTLTEKWNTDNT 79

Query:   170 LTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISA 227
             L TEV+    +++G +L+   +FAPQ+G+K  K    Y +     + +       P+I+A
Sbjct:    80 LFTEVAVQDQLLEGLKLSLEGNFAPQSGNKNGKFKVAYGHENVKADSDVNIDLKGPLINA 139

Query:   228 AGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGP 287
             + VLGY GWL GY   FD++ +KL  N  +LG+   DFV HT V+DG+ F G+++Q+   
Sbjct:   140 SAVLGYQGWLAGYQTAFDTQQSKLTTNNFALGYTTKDFVLHTAVNDGQEFSGSIFQRTSD 199

Query:   288 KLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKLNDALSL 344
             KL+ GVQL+W+S +++TKFA G KY L++ ASVRAKVNNASQ+GLGY QKL D ++L
Sbjct:   200 KLDVGVQLSWASGTSNTKFAIGAKYQLDDDASVRAKVNNASQVGLGYQQKLRDGVTL 256

GO:0005741 "mitochondrial outer membrane" evidence=ISS;NAS

GO:0008308 "voltage-gated anion channel activity" evidence=ISS;IDA

GO:0006839 "mitochondrial transport" evidence=ISS

GO:0016006 "Nebenkern" evidence=IDA

GO:0006811 "ion transport" evidence=IDA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0007602 "phototransduction" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0030382 "sperm mitochondrion organization" evidence=IMP

GO:0007291 "sperm individualization" evidence=IMP

ZFIN|ZDB-GENE-040426-954 zgc:56235 "zgc:56235" [Danio rerio (taxid:7955)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 115/237 (48%), Positives = 162/237 (68%)

Query:   110 FNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNV 169
             +   ++K+DLKTK+ +GVEFN+ G+   ++GK  G+LE+KYK K+  GL+F++KWNTDN+
Sbjct:    22 YGFGIVKLDLKTKSQNGVEFNTSGSTNTDTGKAAGSLETKYKLKDL-GLSFNQKWNTDNM 80

Query:   170 LTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISA 227
             LTTEVS    + +G ++A +TSF P TG K+ KL   YK     V+ + +F+   PV+ +
Sbjct:    81 LTTEVSVEDQLAEGLKVALDTSFVPNTGKKSGKLKTSYKREFVNVSCDLDFEG--PVVHS 138

Query:   228 AGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGP 287
             A VLGY GWL GY + FD+  +KL  N  +LG+   DF  HTNV+DG  FGG+VYQK+  
Sbjct:   139 AAVLGYEGWLLGYLVAFDTAKSKLVQNNFALGYKTGDFQLHTNVNDGAEFGGSVYQKVSD 198

Query:   288 KLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKLNDALSL 344
             +LET V LAW++ SN+T+F    KY L+  AS+ AKVNNAS IG+GY+Q L   + L
Sbjct:   199 QLETAVTLAWTAGSNNTRFGVAAKYQLDKDASLSAKVNNASLIGIGYTQSLRPGVKL 255

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006820 "anion transport" evidence=IEA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

ZFIN|ZDB-GENE-040426-2380 vdac3 "voltage-dependent anion channel 3" [Danio rerio (taxid:7955)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 113/237 (47%), Positives = 154/237 (64%)

Query:   110 FNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNV 169
             +    +K+DLKTK+ SGVEF +GG++  ++GK  G LE+KYK K   GL+ ++KWNTDNV
Sbjct:    57 YGFGTVKLDLKTKSQSGVEFTTGGSSNTDTGKAAGNLETKYKVKEL-GLSLNQKWNTDNV 115

Query:   170 LTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISA 227
             LTTEV+    +  G +L  +TSF P TG K+ KL   YK     V  + +F    P + A
Sbjct:   116 LTTEVTLEDQLTKGLKLGLDTSFVPNTGKKSAKLKTGYKREYMNVGCDLDFDLAGPTVHA 175

Query:   228 AGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGP 287
             A VLGY GWL GY + FD+  +KL  N  +LG+   DF  HTNV+DG  FGG++YQK+  
Sbjct:   176 AAVLGYEGWLAGYQMAFDTAKSKLAQNNFALGYKAGDFQLHTNVNDGTEFGGSIYQKVNG 235

Query:   288 KLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKLNDALSL 344
             +LET V LAW++ SN+T+F    KY L+  +SV AKVNNAS +G+GY+Q L   + L
Sbjct:   236 QLETAVNLAWTAGSNNTRFGIAAKYQLDKDSSVSAKVNNASLVGVGYTQSLRPGVKL 292

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0006820 "anion transport" evidence=IEA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0031101 "fin regeneration" evidence=IEP

UNIPROTKB|F1P0E4 VDAC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 112/246 (45%), Positives = 158/246 (64%)

Query:   105 SSRQIFN----IDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTF 160
             S+R IFN      ++K+D+KTK+ SGVEF + G++  ++GK+ G+LE+KYK   Y GLTF
Sbjct:    14 SARDIFNKGYGFGLVKLDVKTKSASGVEFTTSGSSNTDTGKVNGSLETKYKWAEY-GLTF 72

Query:   161 SEKWNTDNVLTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEF 218
             +EKWNTDN L TE++    I  G +L  +T+F+P TG K+ K+   YK     +  + +F
Sbjct:    73 TEKWNTDNTLGTEIAIEDQIAKGLKLTFDTTFSPNTGKKSGKIKSAYKRECLNLGCDVDF 132

Query:   219 KSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFG 278
                 P I  + V GY GWL GY + FDS  +KL  N  S+G+   DF  HTNV+DG  FG
Sbjct:   133 DFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFSVGYKTGDFQLHTNVNDGSEFG 192

Query:   279 GTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKL 338
             G++YQK+   LET V LAW++ SN T+F    KY L++ AS+ AKVNN+S +G+GY+Q L
Sbjct:   193 GSIYQKVSDNLETAVNLAWTAGSNSTRFGIAAKYKLDSTASISAKVNNSSLVGVGYTQTL 252

Query:   339 NDALSL 344
                + L
Sbjct:   253 RPGVKL 258

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0032272 "negative regulation of protein polymerization" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:2001243 "negative regulation of intrinsic apoptotic signaling pathway" evidence=IEA

UNIPROTKB|Q9I9D1 VDAC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 112/246 (45%), Positives = 158/246 (64%)

Query:   105 SSRQIFN----IDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTF 160
             S+R IFN      ++K+D+KTK+ SGVEF + G++  ++GK+ G+LE+KYK   Y GLTF
Sbjct:    13 SARDIFNKGYGFGLVKLDVKTKSASGVEFTTSGSSNTDTGKVNGSLETKYKWAEY-GLTF 71

Query:   161 SEKWNTDNVLTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEF 218
             +EKWNTDN L TE++    I  G +L  +T+F+P TG K+ K+   YK     +  + +F
Sbjct:    72 TEKWNTDNTLGTEIAIEDQIAKGLKLTFDTTFSPNTGKKSGKIKSAYKRECLNLGCDVDF 131

Query:   219 KSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFG 278
                 P I  + V GY GWL GY + FDS  +KL  N  S+G+   DF  HTNV+DG  FG
Sbjct:   132 DFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFSVGYKTGDFQLHTNVNDGSEFG 191

Query:   279 GTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKL 338
             G++YQK+   LET V LAW++ SN T+F    KY L++ AS+ AKVNN+S +G+GY+Q L
Sbjct:   192 GSIYQKVSDNLETAVNLAWTAGSNSTRFGIAAKYKLDSTASISAKVNNSSLVGVGYTQTL 251

Query:   339 NDALSL 344
                + L
Sbjct:   252 RPGVKL 257

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0032272 "negative regulation of protein polymerization" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:2001243 "negative regulation of intrinsic apoptotic signaling pathway" evidence=IEA

ZFIN|ZDB-GENE-030131-845 vdac2 "voltage-dependent anion channel 2" [Danio rerio (taxid:7955)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 109/246 (44%), Positives = 157/246 (63%)

Query:   105 SSRQIFN----IDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTF 160
             S++ IFN      ++K+D+KTK+ SGVEF + G++  ++ K+ G+LE+KYK   Y GLTF
Sbjct:    13 SAKDIFNKGYGFGMVKLDVKTKSASGVEFKTSGSSNTDTSKVVGSLETKYKRSEY-GLTF 71

Query:   161 SEKWNTDNVLTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEF 218
             +EKWNTDN L TE++    I  G +L  +T+F+P TG K+ K+   YK     +  + +F
Sbjct:    72 TEKWNTDNTLGTEINIEDQIAKGLKLTFDTTFSPNTGKKSGKVKTAYKREFVNLGCDVDF 131

Query:   219 KSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFG 278
                 P I  A V+GY GWL GY + FD+  +K+  N  ++G+   DF  HTNV+DG  FG
Sbjct:   132 DFAGPTIHGAAVVGYEGWLAGYQMSFDTAKSKMTQNNFAVGYKTGDFQLHTNVNDGSEFG 191

Query:   279 GTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKL 338
             G++YQK+  KLET V LAW++ SN T+F    KY L+  AS+ AKVNN S +G+GY+Q L
Sbjct:   192 GSIYQKVSDKLETAVNLAWTAGSNSTRFGIAAKYQLDKDASISAKVNNTSLVGVGYTQSL 251

Query:   339 NDALSL 344
                + L
Sbjct:   252 RPGIKL 257

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0006820 "anion transport" evidence=IEA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0031101 "fin regeneration" evidence=IEP

UNIPROTKB|Q9MZ15 VDAC2 "Voltage-dependent anion-selective channel protein 2" [Sus scrofa (taxid:9823)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 111/246 (45%), Positives = 158/246 (64%)

Query:   105 SSRQIFN----IDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTF 160
             ++R IFN      ++K+D+KTK+ SGVEF++ G++  ++GK+ GTLE+KYK   Y GLTF
Sbjct:    24 AARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLETKYKWCEY-GLTF 82

Query:   161 SEKWNTDNVLTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEF 218
             +EKWNTDN L TE++    I  G +L  +T+F+P TG K+ K+   YK     +  + +F
Sbjct:    83 TEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKRECVNLGCDVDF 142

Query:   219 KSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFG 278
                 P I  + V GY GWL GY + FDS  +KL  N  ++G+   DF  HTNV+DG  FG
Sbjct:   143 DFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQLHTNVNDGTEFG 202

Query:   279 GTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKL 338
             G++YQK+   L+T V LAW+S +N T+F    KY L+  AS+ AKVNN+S IG+GY+Q L
Sbjct:   203 GSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTL 262

Query:   339 NDALSL 344
                + L
Sbjct:   263 RPGVKL 268

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0046930 "pore complex" evidence=IEA

GO:0015288 "porin activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

UNIPROTKB|P68002 VDAC2 "Voltage-dependent anion-selective channel protein 2" [Bos taurus (taxid:9913)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 111/246 (45%), Positives = 158/246 (64%)

Query:   105 SSRQIFN----IDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTF 160
             ++R IFN      ++K+D+KTK+ SGVEF++ G++  ++GK+ GTLE+KYK   Y GLTF
Sbjct:    24 AARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLETKYKWCEY-GLTF 82

Query:   161 SEKWNTDNVLTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEF 218
             +EKWNTDN L TE++    I  G +L  +T+F+P TG K+ K+   YK     +  + +F
Sbjct:    83 TEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKRECINLGCDVDF 142

Query:   219 KSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFG 278
                 P I  + V GY GWL GY + FDS  +KL  N  ++G+   DF  HTNV+DG  FG
Sbjct:   143 DFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQLHTNVNDGTEFG 202

Query:   279 GTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKL 338
             G++YQK+   L+T V LAW+S +N T+F    KY L+  AS+ AKVNN+S IG+GY+Q L
Sbjct:   203 GSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTL 262

Query:   339 NDALSL 344
                + L
Sbjct:   263 RPGVKL 268

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:2001243 "negative regulation of intrinsic apoptotic signaling pathway" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0032272 "negative regulation of protein polymerization" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0046930 "pore complex" evidence=IEA

GO:0015288 "porin activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

UNIPROTKB|E2R948 VDAC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 111/246 (45%), Positives = 158/246 (64%)

Query:   105 SSRQIFN----IDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTF 160
             ++R IFN      ++K+D+KTK+ SGVEF++ G++  ++GK+ GTLE+KYK   Y GLTF
Sbjct:    24 AARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLETKYKWCEY-GLTF 82

Query:   161 SEKWNTDNVLTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEF 218
             +EKWNTDN L TE++    I  G +L  +T+F+P TG K+ K+   YK     +  + +F
Sbjct:    83 TEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKRECINLGCDVDF 142

Query:   219 KSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFG 278
                 P I  + V GY GWL GY + FDS  +KL  N  ++G+   DF  HTNV+DG  FG
Sbjct:   143 DFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQLHTNVNDGTEFG 202

Query:   279 GTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKL 338
             G++YQK+   L+T V LAW+S +N T+F    KY L+  AS+ AKVNN+S IG+GY+Q L
Sbjct:   203 GSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTL 262

Query:   339 NDALSL 344
                + L
Sbjct:   263 RPGVKL 268

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

UNIPROTKB|P45880 VDAC2 "Voltage-dependent anion-selective channel protein 2" [Homo sapiens (taxid:9606)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 111/246 (45%), Positives = 158/246 (64%)

Query:   105 SSRQIFN----IDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTF 160
             ++R IFN      ++K+D+KTK+ SGVEF++ G++  ++GK+ GTLE+KYK   Y GLTF
Sbjct:    24 AARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLETKYKWCEY-GLTF 82

Query:   161 SEKWNTDNVLTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEF 218
             +EKWNTDN L TE++    I  G +L  +T+F+P TG K+ K+   YK     +  + +F
Sbjct:    83 TEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKRECINLGCDVDF 142

Query:   219 KSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFG 278
                 P I  + V GY GWL GY + FDS  +KL  N  ++G+   DF  HTNV+DG  FG
Sbjct:   143 DFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQLHTNVNDGTEFG 202

Query:   279 GTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKL 338
             G++YQK+   L+T V LAW+S +N T+F    KY L+  AS+ AKVNN+S IG+GY+Q L
Sbjct:   203 GSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTL 262

Query:   339 NDALSL 344
                + L
Sbjct:   263 RPGVKL 268

GO:0000166 "nucleotide binding" evidence=IEA

GO:0015288 "porin activity" evidence=IEA

GO:0046930 "pore complex" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0032272 "negative regulation of protein polymerization" evidence=IEA

GO:2001243 "negative regulation of intrinsic apoptotic signaling pathway" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=TAS

GO:0006820 "anion transport" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042645 "mitochondrial nucleoid" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94920	VDAC_DROME	No assigned EC number	0.4938	0.6898	0.8439	yes	N/A
P82013	VDAC2_MELGA	No assigned EC number	0.4552	0.6927	0.8475	yes	N/A
Q5R7V4	VDAC3_PONAB	No assigned EC number	0.4493	0.6927	0.8415	yes	N/A
P81155	VDAC2_RAT	No assigned EC number	0.4390	0.6927	0.8101	yes	N/A
P45880	VDAC2_HUMAN	No assigned EC number	0.4512	0.6927	0.8129	yes	N/A
Q21752	VDAC_CAEEL	No assigned EC number	0.3514	0.6753	0.8233	yes	N/A
Q9MZ15	VDAC2_PIG	No assigned EC number	0.4512	0.6927	0.8129	yes	N/A
Q60930	VDAC2_MOUSE	No assigned EC number	0.4390	0.6927	0.8101	yes	N/A
P68002	VDAC2_BOVIN	No assigned EC number	0.4512	0.6927	0.8129	yes	N/A
P68003	VDAC2_RABIT	No assigned EC number	0.4512	0.6927	0.8129	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	345
cd07306	276	cd07306, Porin3_VDAC, Voltage-dependent anion chan	2e-71
pfam01459	272	pfam01459, Porin_3, Eukaryotic porin	6e-57
cd07303	274	cd07303, Porin3, Eukaryotic porin family that form	3e-32
cd07306	276	cd07306, Porin3_VDAC, Voltage-dependent anion chan	2e-17
pfam01459	272	pfam01459, Porin_3, Eukaryotic porin	3e-15
cd07305	279	cd07305, Porin3_Tom40, Translocase of outer mitoch	1e-04

>gnl|CDD|132767 cd07306, Porin3_VDAC, Voltage-dependent anion channel of the outer mitochondrial membrane

 Score =  223 bits (570), Expect = 2e-71
 Identities = 92/237 (38%), Positives = 142/237 (59%), Gaps = 6/237 (2%)

Query: 110 FNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNV 169
           +N    K+D+KTKT +GVEF S G+ + ++GK+ G+LE+KYK     GLT ++KWNTDNV
Sbjct: 19  YNFGAWKLDVKTKTPNGVEFTSTGSKKPDTGKVSGSLEAKYK---IKGLTLTQKWNTDNV 75

Query: 170 LTTEV--SSNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISA 227
           L TE+     +  G +L  +T+F P TG K+ KL   YK+    +N + +     P++ A
Sbjct: 76  LLTEITIEDLLAPGLKLTLDTTFPPNTGKKSGKLKAGYKHDPININADVDLNK-GPLVGA 134

Query: 228 AGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGP 287
           + VLGY G+L G  + +D+  +K      +LG+   DF     +++GK   G+ + K+ P
Sbjct: 135 SAVLGYKGFLLGAEVVYDTAKSKFTKYNFALGYTNGDFELSLKLNNGKTLRGSYFHKVSP 194

Query: 288 KLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKLNDALSL 344
           +L  G ++ W S +N+T FA G +Y L+  A V+AKVNN  Q+GL Y  KL   ++L
Sbjct: 195 RLAVGAKVTWYSGTNETTFAVGGQYALDPDALVKAKVNNDGQLGLSYQHKLRPGVTL 251

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies. Length = 276

>gnl|CDD|216515 pfam01459, Porin_3, Eukaryotic porin

 Score =  185 bits (472), Expect = 6e-57
 Identities = 75/239 (31%), Positives = 121/239 (50%), Gaps = 7/239 (2%)

Query: 110 FNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNV 169
           ++ D  K+D+ TK+  GV F   G+  L  G   G  E+KYK     GLT + KW+TDN 
Sbjct: 20  YHFDGAKLDVTTKSPLGVAFTVSGSKSLGGGLSSGDFEAKYK---DKGLTLTLKWDTDND 76

Query: 170 LTTEVSSN--IIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISA 227
           L+T  + N  +  G +L  +T   P TG K+ KL  EYK      +L+       P++  
Sbjct: 77  LSTNATVNDQLAPGLKLKLSTQLVPGTGKKSAKLELEYKGDDFTASLKVGL-LKGPIVVG 135

Query: 228 AGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNV-DDGKLFGGTVYQKLG 286
           + + G  G   G    +D+   KL     +LG+   D++    + + G +   + Y K+ 
Sbjct: 136 SALQGVTGLALGAEAVYDTASGKLTKYNAALGYAARDYIASLTLNNKGDVLTASYYHKVS 195

Query: 287 PKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKLNDALSLN 345
            KLE G +L W+  SN+T    G KYDL+   +V+AKV++  ++GL   ++L   ++L 
Sbjct: 196 DKLEVGAELTWNFSSNETTTTVGYKYDLDPSTTVKAKVDSNGKVGLLLEKRLRPGVTLT 254

Length = 272

>gnl|CDD|132765 cd07303, Porin3, Eukaryotic porin family that forms channels in the mitochondrial outer membrane

 Score =  121 bits (304), Expect = 3e-32
 Identities = 95/239 (39%), Positives = 139/239 (58%), Gaps = 16/239 (6%)

Query: 115 IKIDLKTKTDSGVEFNSGGTAQLESG----KIFGTLESKYKAKNYAGLTFSEKWNTDNVL 170
           IK+D+KTK++   EF S G+A  E+     K+ G+LE+KY+   Y GLTF+EKWNTDN L
Sbjct: 21  IKLDVKTKSEL--EFTSSGSANTETIESTTKVGGSLETKYRWSPY-GLTFTEKWNTDNTL 77

Query: 171 TTE--VSSNIIDGARLAANTSFAPQTGDKTVKLSGEYK--NSLAAVNLESEFKSLNPVIS 226
             E  V   +  G +   ++SF+P TG K  K+   YK  N    V+ +       P+I 
Sbjct: 78  GLEITVEDQLSRGLKSTFDSSFSPNTGKKNAKIKTGYKRINLGCDVDFDIA----GPLIR 133

Query: 227 AAGVLGYNGWLCGYSLKFDSKDAKLKAN-RLSLGFVGSDFVFHTNVDDGKLFGGTVYQKL 285
            A VLGY GWL GY + F++     ++N  +      ++F  HTNV+DG  FGG++Y K+
Sbjct: 134 GALVLGYEGWLAGYQMVFETVSRVTQSNFAVGYKTDYNEFQAHTNVNDGTEFGGSIYHKV 193

Query: 286 GPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKLNDALSL 344
             KLE GV LA ++ +++T+F    KY ++  A   A VNN+S +GLGY+Q L   + L
Sbjct: 194 NDKLEVGVNLAATAGNSNTRFGIAAKYQVDPDACFSASVNNSSLVGLGYTQTLKPGIKL 252

The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane. Length = 274

>gnl|CDD|132767 cd07306, Porin3_VDAC, Voltage-dependent anion channel of the outer mitochondrial membrane

 Score = 80.7 bits (200), Expect = 2e-17
 Identities = 34/64 (53%), Positives = 47/64 (73%)

Query: 3  PPLYGDLGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYK 62
          PP Y D+GK A+DL +KGYN    K+D+KTKT +GVEF S G+ + ++GK+ G+LE+KYK
Sbjct: 1  PPTYFDIGKSAKDLLTKGYNFGAWKLDVKTKTPNGVEFTSTGSKKPDTGKVSGSLEAKYK 60

Query: 63 AKNY 66
           K  
Sbjct: 61 IKGL 64

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies. Length = 276

>gnl|CDD|216515 pfam01459, Porin_3, Eukaryotic porin

 Score = 74.2 bits (183), Expect = 3e-15
 Identities = 28/64 (43%), Positives = 36/64 (56%)

Query: 2  APPLYGDLGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKY 61
           P  Y D+GK ARDL +K Y+ D  K+D+ TK+  GV F   G+  L  G   G  E+KY
Sbjct: 1  NPGTYEDIGKEARDLLNKDYHFDGAKLDVTTKSPLGVAFTVSGSKSLGGGLSSGDFEAKY 60

Query: 62 KAKN 65
          K K 
Sbjct: 61 KDKG 64

Length = 272

>gnl|CDD|132766 cd07305, Porin3_Tom40, Translocase of outer mitochondrial membrane 40 (Tom40)

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 282 YQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKLNDA 341
           Y+KL  KL+ GV+L  +  + ++    G +YD   Q+  R  +++  ++     ++L   
Sbjct: 196 YRKLSDKLQLGVELELNLRTRESTATLGYQYDFR-QSRFRGSIDSNGKVSAVLEKRLPLP 254

Query: 342 LSLN 345
           LSL 
Sbjct: 255 LSLL 258

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery. Length = 279

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	345
KOG3126|consensus	281		100.0
cd07306	276	Porin3_VDAC Voltage-dependent anion channel of the	100.0
cd07303	274	Porin3 Eukaryotic porin family that forms channels	100.0
PF01459	273	Porin_3: Eukaryotic porin; InterPro: IPR001925 The	100.0
cd07305	279	Porin3_Tom40 Translocase of outer mitochondrial me	99.97
cd07306	276	Porin3_VDAC Voltage-dependent anion channel of the	99.7
KOG3126|consensus	281		99.6
cd07303	274	Porin3 Eukaryotic porin family that forms channels	99.43
PF01459	273	Porin_3: Eukaryotic porin; InterPro: IPR001925 The	99.36
KOG3296|consensus	308		99.2
cd07305	279	Porin3_Tom40 Translocase of outer mitochondrial me	98.97
TIGR00989	161	3a0801s07tom40 mitochondrial import receptor subun	97.69
TIGR00989	161	3a0801s07tom40 mitochondrial import receptor subun	94.22
PRK10716	435	long-chain fatty acid outer membrane transporter;	89.58
PF10082	381	DUF2320: Uncharacterized protein conserved in bact	86.2

>KOG3126|consensus

Probab=100.00  E-value=1.1e-61  Score=456.23  Aligned_cols=254  Identities=46%  Similarity=0.824  Sum_probs=245.5

Q ss_pred             CCCCCCCCcCCCccccCCCCCCCcceEEEEEEeCCCCeEEEEeeeeecCCCceEEEEEeeEeeeccccccccCcccccch
Q psy5108           1 MAPPLYGDLGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGWLCGYSLKFDSK   80 (345)
Q Consensus         1 m~p~~f~DigK~a~Dll~k~y~~~~~kl~~kt~~~~gv~~~~~~~~~~~~~~~~g~~~~k~~~~~~~~~~~~~~~~~~~~   80 (345)
                      |+||.|.||||.|||||+|||++++|+++++|++.+||+|+++|.++.+.+++.|.+|+||                   
T Consensus         2 ~~pp~y~digK~ArDl~~kgy~~g~~~~~~~t~t~~gv~ftssg~~~~~~~~v~gsle~k~-------------------   62 (281)
T KOG3126|consen    2 MAPPTYADLGKLARDLFNKGYGFGLWKLDLKTKTESGVEFTSSGSVNTDTGKVKGSLETKY-------------------   62 (281)
T ss_pred             CCCcchhhhhhHHHHHhhCCCCCCcEEEEEEeeccCcEEEEeeeccccceeeeeeeeEEEE-------------------
Confidence            7899999999999999999999999999999999999999999999988999999999999                   


Q ss_pred             hhHhhhcccccccccccceeeccccccceeeeeeEEEEEeeecCCCeeeeeccccccccCceecceeeeeccccccceee
Q psy5108          81 DAKLKANRLSLGFVGSDFVFHTNVSSRQIFNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTF  160 (345)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~rD~y~~g~~~ldvkTkt~ngv~ft~~g~~~~~~~~v~g~le~~~k~~~~~Glt~  160 (345)
                                                                                            ++++| |+++
T Consensus        63 ----------------------------------------------------------------------~~~~~-glt~   71 (281)
T KOG3126|consen   63 ----------------------------------------------------------------------KDKDY-GLTL   71 (281)
T ss_pred             ----------------------------------------------------------------------eeccC-ceEE
Confidence                                                                                  55889 9999


Q ss_pred             EEEecCCCceEEEEEEE--ecccceEEEEEEEecCCCCcceEEEEEEeccceeeeeeeeeeecCceEEeeeEEeecceeE
Q psy5108         161 SEKWNTDNVLTTEVSSN--IIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGYNGWLC  238 (345)
Q Consensus       161 t~~w~t~n~l~tei~~~--l~~GLK~~l~~~~~p~~~~ks~kL~~~y~~~~~~~~~~~~l~~~~P~v~~s~v~g~~g~~l  238 (345)
                      +|+|+|+|.|.|+|+++  ++||||++++.+|.|+++++++|++++|.|++++++++ .+.+.+|.+.+++|+|+++|++
T Consensus        72 t~kw~Tdn~L~t~I~~~~~~~pglk~~~~~s~~p~~~~ks~Klk~~y~~~~~~~~~~-~~~~~~P~i~~s~v~g~~g~l~  150 (281)
T KOG3126|consen   72 TEKWNTDNTLGTEITVEDQLAPGLKLTLDSSFSPNTGKKSGKLKLSYARDHFNLGAD-DFLTANPLILGSLVLGHEGWLL  150 (281)
T ss_pred             EEEeecCCccceEEEEccccCCceEEEEEEeecCcccccceeeecccccccceeeec-cccccCCeEEEEEEecccceEE
Confidence            99999999999999997  99999999999999988999999999999999999986 5556899999999999999999


Q ss_pred             eEEEEEeccCccccceeEEeeEEcCceEEEEEecCCCceeeeEEEEccCceeEEEEEEEeccCCCceEEEEEEEecCCCc
Q psy5108         239 GYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQA  318 (345)
Q Consensus       239 G~e~~yd~~~~~~tk~~~~lgY~~~d~~~s~~l~n~~~~~~S~~~kv~~~~~vGae~~~~~~~~~~~~~vG~ky~ld~~~  318 (345)
                      |+|+.||++++++++|+++++|.++|+++++.++|++++.+|+|||+++.+++++++.|..+.++++|+||.||.+|+++
T Consensus       151 G~~~~fDt~~~~~t~~n~~lgy~~~d~~l~~~~nn~~~~~~s~yq~v~~~~~~~~~~~~~~~~~~~~~~igt~Y~lD~~t  230 (281)
T KOG3126|consen  151 GYETTFDTASGKLTKYNAALGYTTEDFTLHLNLNNGTEFLASIYQRVNEKLETGANAEWIAGSSNTRFTIGTKYALDPDT  230 (281)
T ss_pred             EEeEEEeccCCcEeeEEEEEEeecCCcEEEEEecccchhhhhhhhhhcchheeeeeEEEeecCCccEEEEEEEeccCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999889999999999999999


Q ss_pred             EEEEEEcCCCeEEEEEEEEccCCceeC
Q psy5108         319 SVRAKVNNASQIGLGYSQKLNDALSLN  345 (345)
Q Consensus       319 ~lKAKvnn~g~vgl~y~qkL~p~v~lt  345 (345)
                      +|||||||+|+++++|||+|||+|+++
T Consensus       231 ~VkAKVnn~g~~gl~yq~~lrp~i~~t  257 (281)
T KOG3126|consen  231 SVKAKVNNAGLAGLGYQQTLRPGIKVT  257 (281)
T ss_pred             eeeeeecCCceeeEEEEEecCCCcEEE
Confidence            999999999999999999999999875

>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane

Probab=100.00  E-value=3.7e-56  Score=423.26  Aligned_cols=250  Identities=42%  Similarity=0.781  Sum_probs=239.4

Q ss_pred             CCCCCCcCCCccccCCCCCCCcceEEEEEEeCCCCeEEEEeeeeecCCCceEEEEEeeEeeeccccccccCcccccchhh
Q psy5108           3 PPLYGDLGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGWLCGYSLKFDSKDA   82 (345)
Q Consensus         3 p~~f~DigK~a~Dll~k~y~~~~~kl~~kt~~~~gv~~~~~~~~~~~~~~~~g~~~~k~~~~~~~~~~~~~~~~~~~~~~   82 (345)
                      ||+|+||||.|||||+|||+++.|+|+|+|++++||+|++.++++.+.++++|.+|+||.                    
T Consensus         1 p~~f~digK~akDll~k~y~~g~~kl~~~tk~~~gv~~~~~g~~~~~~~~~~g~~e~k~~--------------------   60 (276)
T cd07306           1 PPTYFDIGKSAKDLLTKGYNFGAWKLDVKTKTPNGVEFTSTGSKKPDTGKVSGSLEAKYK--------------------   60 (276)
T ss_pred             CCceeccccchhhcccCCCCCCCEEEEEEEECCCCeEEEEEEEeCCCCceEEEEEEEEEE--------------------
Confidence            899999999999999999998999999999999999999999999877999999999992                    


Q ss_pred             HhhhcccccccccccceeeccccccceeeeeeEEEEEeeecCCCeeeeeccccccccCceecceeeeeccccccceeeEE
Q psy5108          83 KLKANRLSLGFVGSDFVFHTNVSSRQIFNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSE  162 (345)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~rD~y~~g~~~ldvkTkt~ngv~ft~~g~~~~~~~~v~g~le~~~k~~~~~Glt~t~  162 (345)
                                                                                             .. |++++|
T Consensus        61 -----------------------------------------------------------------------~~-~~t~~~   68 (276)
T cd07306          61 -----------------------------------------------------------------------IK-GLTLTQ   68 (276)
T ss_pred             -----------------------------------------------------------------------eC-CEEEEE
Confidence                                                                                   23 789999


Q ss_pred             EecCCCceEEEEEEE--ecccceEEEEEEEecCCCCcceEEEEEEeccceeeeeeeeeeecCceEEeeeEEeecceeEeE
Q psy5108         163 KWNTDNVLTTEVSSN--IIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGYNGWLCGY  240 (345)
Q Consensus       163 ~w~t~n~l~tei~~~--l~~GLK~~l~~~~~p~~~~ks~kL~~~y~~~~~~~~~~~~l~~~~P~v~~s~v~g~~g~~lG~  240 (345)
                      +|+|+|.+.++|+++  ++||||++++++|.|+.+.++++|+++|+|+++++++++++. ..|.++.++++|+++|++|+
T Consensus        69 k~~t~n~l~t~v~~~~~~~~glk~~~~~~~~p~~~~~s~kl~~~y~~~~~~~~~~v~~~-~~p~~~~s~~~g~~~~~~G~  147 (276)
T cd07306          69 KWNTDNVLLTEITIEDLLAPGLKLTLDTTFPPNTGKKSGKLKAGYKHDPININADVDLN-KGPLVGASAVLGYKGFLLGA  147 (276)
T ss_pred             EEeCCCceeEEEEECcccCCcceEEEEEEECCCCCCceEEEEEEEecCCeeEEEEeccc-CCCeeEEEEEecccceEEEE
Confidence            999999999999999  669999999999999988999999999999999999999886 39999999999999999999


Q ss_pred             EEEEeccCccccceeEEeeEEcCceEEEEEecCCCceeeeEEEEccCceeEEEEEEEeccCCCceEEEEEEEecCCCcEE
Q psy5108         241 SLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASV  320 (345)
Q Consensus       241 e~~yd~~~~~~tk~~~~lgY~~~d~~~s~~l~n~~~~~~S~~~kv~~~~~vGae~~~~~~~~~~~~~vG~ky~ld~~~~l  320 (345)
                      |+.||++++++++++++++|+.+||+++++++|++.+++||||+|++++++|+|+.|+...+++.++||+||++|+++++
T Consensus       148 e~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~l~~~~~l~~S~~~kv~~~l~~g~e~~~~~~~~~~~~~vg~~y~l~~~~~v  227 (276)
T cd07306         148 EVVYDTAKSKFTKYNFALGYTNGDFELSLKLNNGKTLRGSYFHKVSPRLAVGAKVTWYSGTNETTFAVGGQYALDPDALV  227 (276)
T ss_pred             EEEEeccCCcEeeEEEEEEEecCCeEEEEEECCCCEEEEEEEEEcCCCeEEEEEEEEecCCCCcEEEEEEEEEcCCCCEE
Confidence            99999999899999999999999999999999999999999999999999999999999888999999999999999999


Q ss_pred             EEEEcCCCeEEEEEEEEccCCceeC
Q psy5108         321 RAKVNNASQIGLGYSQKLNDALSLN  345 (345)
Q Consensus       321 KAKvnn~g~vgl~y~qkL~p~v~lt  345 (345)
                      |||||++|.++++|+|+|+|+++++
T Consensus       228 kakv~~~g~v~~~y~~kl~~~v~~t  252 (276)
T cd07306         228 KAKVNNDGQLGLSYQHKLRPGVTLT  252 (276)
T ss_pred             EEEECCCceEEEEEEEEcCCCcEEE
Confidence            9999999999999999999999874

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.

>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane

Probab=100.00  E-value=1.4e-46  Score=357.43  Aligned_cols=245  Identities=42%  Similarity=0.780  Sum_probs=223.8

Q ss_pred             CCCCcCCCccccCCCCCCCcceEEEEEEeCCCCeEEEEeeeeecC----CCceEEEEEeeEeeeccccccccCcccccch
Q psy5108           5 LYGDLGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGGTAQLE----SGKIFGTLESKYKAKNYAGWLCGYSLKFDSK   80 (345)
Q Consensus         5 ~f~DigK~a~Dll~k~y~~~~~kl~~kt~~~~gv~~~~~~~~~~~----~~~~~g~~~~k~~~~~~~~~~~~~~~~~~~~   80 (345)
                      .|.||||.|||||++||++| +||+|++.+++  +|+++++...+    .+++.+.+|+||                   
T Consensus         1 ~~~digk~ardll~~~~~~g-~k~~v~~~~~~--~f~~s~~~~~~~~~~~~~~~~~~~~k~-------------------   58 (274)
T cd07303           1 TYAELGKSARDLFTKGYGGG-IKLDVKTKSEL--EFTSSGSANTETIESTTKVGGSLETKY-------------------   58 (274)
T ss_pred             ChhHhhhhhHHhcccCCCCC-EEEEEEecCCC--ccEEcccccccccCCCceEEEEEEEee-------------------
Confidence            48999999999999999988 59999999988  69999887743    346666666666                   


Q ss_pred             hhHhhhcccccccccccceeeccccccceeeeeeEEEEEeeecCCCeeeeeccccccccCceecceeeeeccccccceee
Q psy5108          81 DAKLKANRLSLGFVGSDFVFHTNVSSRQIFNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTF  160 (345)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~rD~y~~g~~~ldvkTkt~ngv~ft~~g~~~~~~~~v~g~le~~~k~~~~~Glt~  160 (345)
                                                                                            +++++ |+++
T Consensus        59 ----------------------------------------------------------------------~~~~~-~~t~   67 (274)
T cd07303          59 ----------------------------------------------------------------------RWSPY-GLTF   67 (274)
T ss_pred             ----------------------------------------------------------------------eecCC-CeEE
Confidence                                                                                  55667 9999


Q ss_pred             EEEecCCCceEEEEEEE--ecccceEEEEEEEecCCCCcceEEEEEEeccceeeeeeeeeeecCceEEeeeEEeecceeE
Q psy5108         161 SEKWNTDNVLTTEVSSN--IIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGYNGWLC  238 (345)
Q Consensus       161 t~~w~t~n~l~tei~~~--l~~GLK~~l~~~~~p~~~~ks~kL~~~y~~~~~~~~~~~~l~~~~P~v~~s~v~g~~g~~l  238 (345)
                      +++|+++|.+.++++++  +.||||+++.+++.|+++.++++++.+|+++++++.++++  ..+|++..++++++++|++
T Consensus        68 ~~~~~~dn~~~~~~~~~~~~~~glk~~~~~~~~~~~~~~~~q~~~~y~~~~~~~~l~~~--~~gp~v~~~~~~g~~~~~~  145 (274)
T cd07303          68 TEKWNTDNTLGLEITVEDQLSRGLKSTFDSSFSPNTGKKNAKIKTGYKRINLGCDVDFD--IAGPLIRGALVLGYEGWLA  145 (274)
T ss_pred             EEEEEcCCcceEEEEEecccCCCeEEEEEEEECCCCccEEEEEeccEEcCCeeEEEEee--cCCCEEEEEEEEeecceEE
Confidence            99999999999999999  8899999999999887788999999999999888876654  4799999999999999999


Q ss_pred             eEEEEEeccCccccceeEEeeEEc--CceEEEEEecCCCceeeeEEEEccCceeEEEEEEEeccCCCceEEEEEEEecCC
Q psy5108         239 GYSLKFDSKDAKLKANRLSLGFVG--SDFVFHTNVDDGKLFGGTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLEN  316 (345)
Q Consensus       239 G~e~~yd~~~~~~tk~~~~lgY~~--~d~~~s~~l~n~~~~~~S~~~kv~~~~~vGae~~~~~~~~~~~~~vG~ky~ld~  316 (345)
                      |+|+.||+++ .+++++++++|..  +||+++++++|++.+++||||||+++|++|+|++|+.+++++.++||+||+||+
T Consensus       146 G~e~~yd~~~-~~~~~~~~~~y~~~y~d~~~s~~l~~~~~l~~Sy~hkvs~~~~~g~e~~~~~~~~e~~~~vG~~y~l~~  224 (274)
T cd07303         146 GYQMVFETVS-RVTQSNFAVGYKTDYNEFQAHTNVNDGTEFGGSIYHKVNDKLEVGVNLAATAGNSNTRFGIAAKYQVDP  224 (274)
T ss_pred             EEEEEEeccc-cccccceEEEEEccCCCeEEEEEEcCCCeEEEEEEEEcCCceEEEEEEEeeccCCccEEEEEEEEecCC
Confidence            9999999988 4689999999999  899999999999999999999999999999999999888999999999999999


Q ss_pred             CcEEEEEEcCCCeEEEEEEEEccCCceeC
Q psy5108         317 QASVRAKVNNASQIGLGYSQKLNDALSLN  345 (345)
Q Consensus       317 ~~~lKAKvnn~g~vgl~y~qkL~p~v~lt  345 (345)
                      ++++|||||++|.++++|||+|+|+++|+
T Consensus       225 ~~~vkakids~g~v~~~~~~~l~~~~~lt  253 (274)
T cd07303         225 DACFSASVNNSSLVGLGYTQTLKPGIKLT  253 (274)
T ss_pred             CCEEEEEECCCceEEEEEEEEcCCCcEEE
Confidence            99999999999999999999999999875

The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.

>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]

Probab=100.00  E-value=2.7e-40  Score=310.81  Aligned_cols=249  Identities=27%  Similarity=0.466  Sum_probs=227.3

Q ss_pred             CCCCCCCcCCCccccCCCCCCCcceEEEEEEeCCCCeEEEEeeeeecCCC-ceEEEEEeeEeeeccccccccCcccccch
Q psy5108           2 APPLYGDLGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGGTAQLESG-KIFGTLESKYKAKNYAGWLCGYSLKFDSK   80 (345)
Q Consensus         2 ~p~~f~DigK~a~Dll~k~y~~~~~kl~~kt~~~~gv~~~~~~~~~~~~~-~~~g~~~~k~~~~~~~~~~~~~~~~~~~~   80 (345)
                      +||.|.||+|.|||||++||+|+.++|+|++++++|+.|++++......+ .+.+.++++|.                  
T Consensus         1 nP~~f~dl~k~akdll~~~y~f~g~kl~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~------------------   62 (273)
T PF01459_consen    1 NPGSFEDLGKEAKDLLPKDYNFDGFKLDVKKKTPNGPNFTVSHSFSLGTSVPSSYSFGAKYK------------------   62 (273)
T ss_dssp             -S-SCCCCCHCCHHHHCTTSSTTEEEEEEEEE-TTCEEEEEEEEEETTTT--EEEEEEEEEE------------------
T ss_pred             CCCChHHHhHHHHHhccCCCCCcCEEEEEEecccCcceEEEEEEEecCCCCccceEEEEEEe------------------
Confidence            59999999999999999999999999999999999999999999997767 89999999992                  


Q ss_pred             hhHhhhcccccccccccceeeccccccceeeeeeEEEEEeeecCCCeeeeeccccccccCceecceeeeeccccccceee
Q psy5108          81 DAKLKANRLSLGFVGSDFVFHTNVSSRQIFNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTF  160 (345)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~rD~y~~g~~~ldvkTkt~ngv~ft~~g~~~~~~~~v~g~le~~~k~~~~~Glt~  160 (345)
                                                                                                  |.++
T Consensus        63 ----------------------------------------------------------------------------~~~~   66 (273)
T PF01459_consen   63 ----------------------------------------------------------------------------GPKL   66 (273)
T ss_dssp             ----------------------------------------------------------------------------CEEE
T ss_pred             ----------------------------------------------------------------------------Ccee
Confidence                                                                                        4467


Q ss_pred             EEEecCCCceEEEEEEE--ecccceEEEEEEEecCCCCcceEEEEEEeccceeeeeeeeeeecCceEEeeeEEeec-cee
Q psy5108         161 SEKWNTDNVLTTEVSSN--IIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGYN-GWL  237 (345)
Q Consensus       161 t~~w~t~n~l~tei~~~--l~~GLK~~l~~~~~p~~~~ks~kL~~~y~~~~~~~~~~~~l~~~~P~v~~s~v~g~~-g~~  237 (345)
                      ++.|+.++...++++++  +.|||++.+.+++.|.+..+..+++++|+++.+++.+++++ ...|.+..+.+.++. +|+
T Consensus        67 ~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~-~~~~~~~~s~~~~v~~~~~  145 (273)
T PF01459_consen   67 TVKGDTDNDGNLEASVRNKLSPGLKLKLSAQLSPGSGKKSAQLEADYKGDDFNATFKVDN-DNNPIFNASYVQSVTPNLA  145 (273)
T ss_dssp             EEEEETTTEEEEEEEEESSTTTTEEEEEEEEE-TTTS-EEEEEEEEEEETTEEEEEEEEE-STS-EEEEEEEEEET-TEE
T ss_pred             eEEEEeCCcccEEEEEecccCcceEEEEEEEEeecCCceeeEEEEEEecCCEEEEEEEcc-cCCCcEEEEEEEeccccEE
Confidence            78999999999999999  89999999999998876678999999999999999998887 469999999999997 999


Q ss_pred             EeEEEEEeccCccccceeEEeeEEcC----ceEEEEEe-cCCCceeeeEEEEccCceeEEEEEEEeccCCCceEEEEEEE
Q psy5108         238 CGYSLKFDSKDAKLKANRLSLGFVGS----DFVFHTNV-DDGKLFGGTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKY  312 (345)
Q Consensus       238 lG~e~~yd~~~~~~tk~~~~lgY~~~----d~~~s~~l-~n~~~~~~S~~~kv~~~~~vGae~~~~~~~~~~~~~vG~ky  312 (345)
                      +|+|+.||...+.+.+++++++|..+    ++++++++ ++...+.+||||++++++++|+|+.|+....++.++||++|
T Consensus       146 lG~e~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~sy~~k~~~~~~~g~e~~~~~~~~~~~~~vG~~~  225 (273)
T PF01459_consen  146 LGAEATYDLSSGKSSKYNAGLSYAARYTHPDYTASATLSNNFGTLTASYFQKVNDKLQLGAELTYNLSSRESTFTVGYQY  225 (273)
T ss_dssp             EEEEEEEETTTTCEEEEEEEEEEEET----TEEEEEEE-ETTTEEEEEEEEESSTTEEEEEEEEEETTCCEEEEEEEEEE
T ss_pred             EEEEEEEecccCCcCcceEEEEEeccccceeEEEEEEEcCCCCEEEEEEEEEeccceeeeeeeeecccCCCceEEEEEEE
Confidence            99999999999999999999999988    99999999 46999999999999999999999999999999999999999


Q ss_pred             ecCCCcEEEEEEcCCCeEEEEEEEEccCCceeC
Q psy5108         313 DLENQASVRAKVNNASQIGLGYSQKLNDALSLN  345 (345)
Q Consensus       313 ~ld~~~~lKAKvnn~g~vgl~y~qkL~p~v~lt  345 (345)
                      ++++.++||+|||++|.++++|+++|+|+++|+
T Consensus       226 ~l~~~~~vk~kvds~g~v~~~~~~~l~~~~~l~  258 (273)
T PF01459_consen  226 KLDDSSTVKAKVDSNGRVSASYEQKLNPGVTLT  258 (273)
T ss_dssp             EECTTEEEEEEEETTSEEEEEEEEEECTTEEEE
T ss_pred             EcCcccEEEEEEcCCCEEEEEEEEecCCCcEEE
Confidence            999888999999999999999999999999874

The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.

>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40)

Probab=99.97  E-value=4.5e-28  Score=230.96  Aligned_cols=244  Identities=14%  Similarity=0.246  Sum_probs=204.4

Q ss_pred             CCCCCCCcCCCccccCCCCCCCcceEEEEEEeCCCCeEEEEeeeeecCCC-ceEEEEEeeEeeeccccccccCcccccch
Q psy5108           2 APPLYGDLGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGGTAQLESG-KIFGTLESKYKAKNYAGWLCGYSLKFDSK   80 (345)
Q Consensus         2 ~p~~f~DigK~a~Dll~k~y~~~~~kl~~kt~~~~gv~~~~~~~~~~~~~-~~~g~~~~k~~~~~~~~~~~~~~~~~~~~   80 (345)
                      .|+.|.||.|.+|||+..+|..|. +|++.....+...++-+-..... + ...-.+-+.|..                 
T Consensus         3 nPg~~e~l~~e~k~~~~~~~~~G~-r~~~~k~ls~~f~~shs~~lg~~-~~~~~y~f~a~y~~-----------------   63 (279)
T cd07305           3 NPGTFEELHREVKEVFPLDFFDGF-RLDVNKGLSPHFQVSHSLHLGSS-SLTSSYQFGATYVG-----------------   63 (279)
T ss_pred             CCccHHHHHHHHHHhcCccccccE-EEEEccccCcCeeEEEEEEECCC-CCCCCcEeeeEEec-----------------
Confidence            499999999999999999988555 99999887777666555444431 2 233455555521                 


Q ss_pred             hhHhhhcccccccccccceeeccccccceeeeeeEEEEEeeecCCCeeeeeccccccccCceecceeeeecccc--ccce
Q psy5108          81 DAKLKANRLSLGFVGSDFVFHTNVSSRQIFNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKN--YAGL  158 (345)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~rD~y~~g~~~ldvkTkt~ngv~ft~~g~~~~~~~~v~g~le~~~k~~~--~~Gl  158 (345)
                                                                                              .+  .   
T Consensus        64 ------------------------------------------------------------------------~~~~~---   68 (279)
T cd07305          64 ------------------------------------------------------------------------DKQYP---   68 (279)
T ss_pred             ------------------------------------------------------------------------CCCcE---
Confidence                                                                                    22  3   


Q ss_pred             eeEEEecCCCceEEEEEEEecccceEEEEEEEecCCCCcceEEEEEEeccceeeeeeeeeeecCc-eEEeeeEEe-----
Q psy5108         159 TFSEKWNTDNVLTTEVSSNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNP-VISAAGVLG-----  232 (345)
Q Consensus       159 t~t~~w~t~n~l~tei~~~l~~GLK~~l~~~~~p~~~~ks~kL~~~y~~~~~~~~~~~~l~~~~P-~v~~s~v~g-----  232 (345)
                      .+.-++++++.+.+.+...+.+.++..+..++ |+.+....+++++|..+++++.    +.+.+| .++.+++++     
T Consensus        69 ~~~~~id~~g~l~~~~~~~~~~~~~~k~~~~~-~~~~~~~~q~~~dy~g~d~t~~----l~~~n~~~~~~sg~~~~~ylq  143 (279)
T cd07305          69 FLQGDIDNDGNLNARIIHQLGDRLRSKLQAQL-QDSKFNMSQLELDYRGDDFTAS----LKLANPDILNETGIYVASYLQ  143 (279)
T ss_pred             EEEEEeCCCCceeEEEEeccCcceEEEEEEEe-cCCCceeEEEEEEEcCCceEEE----EEEeCCCcccccEEEEEEEEE
Confidence            56668999999999998778899999888887 3435568999999999888864    445788 457788877     


Q ss_pred             --ecceeEeEEEEEec-cCccccceeEEeeEEcCceEEEEEecCCCceeeeEEEEccCceeEEEEEEEeccCCCceEEEE
Q psy5108         233 --YNGWLCGYSLKFDS-KDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGPKLETGVQLAWSSESNDTKFAFG  309 (345)
Q Consensus       233 --~~g~~lG~e~~yd~-~~~~~tk~~~~lgY~~~d~~~s~~l~n~~~~~~S~~~kv~~~~~vGae~~~~~~~~~~~~~vG  309 (345)
                        .+.|.+|+|+.|++ +.++++.++++++|+.++|++++++++...+.+||||++++++++|+|+.|+...+++.+++|
T Consensus       144 ~vt~~l~lG~E~~~~~~~~~~~~~~~~~~rY~~~d~~~s~~l~~~~~l~asY~~kvs~~l~lG~el~~~~~~~es~~tvg  223 (279)
T cd07305         144 SVTPKLALGGELVYQRVPGNGISVLSYAARYTAGNWIASGQLGAQGGLHLSYYRKLSDKLQLGVELELNLRTRESTATLG  223 (279)
T ss_pred             EccCcEEEEEEEEEEEcCCCCceeEEEEEEEccCCEEEEEEEcCCCeEEEEEEEEcccceEeeeeeeecccCCceeEEEE
Confidence              69999999999996 567789999999999999999999999889999999999999999999999999999999999


Q ss_pred             EEEecCCCcEEEEEEcCCCeEEEEEEEEccCCceeC
Q psy5108         310 CKYDLENQASVRAKVNNASQIGLGYSQKLNDALSLN  345 (345)
Q Consensus       310 ~ky~ld~~~~lKAKvnn~g~vgl~y~qkL~p~v~lt  345 (345)
                      ++|.++ ++.+||+||++|.++++|+|+|+|+++|+
T Consensus       224 ~~y~~~-~~~~k~~ids~g~v~~~~e~~l~~~~~l~  258 (279)
T cd07305         224 YQYDFR-QSRFRGSIDSNGKVSAVLEKRLPLPLSLL  258 (279)
T ss_pred             EEEEcC-CCEEEEEEcCCCEEEEEEEEecCCCeEEE
Confidence            999996 99999999999999999999999999874

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.

>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane

Probab=99.70  E-value=2.7e-15  Score=142.92  Aligned_cols=187  Identities=26%  Similarity=0.417  Sum_probs=141.8

Q ss_pred             eeecccccccee----eeeeEEEEEeeecCCCeeeeeccccccccCceecceeeeeccccccceeeEEEecCCCceEEEE
Q psy5108          99 VFHTNVSSRQIF----NIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNVLTTEV  174 (345)
Q Consensus        99 ~~~~~~~~rD~y----~~g~~~ldvkTkt~ngv~ft~~g~~~~~~~~v~g~le~~~k~~~~~Glt~t~~w~t~n~l~tei  174 (345)
                      +.+-||++||.+    +++.|+|||+|++++||+|++.|.+.++.++++|+||     .+|       ++.  +...++ 
T Consensus         4 f~digK~akDll~k~y~~g~~kl~~~tk~~~gv~~~~~g~~~~~~~~~~g~~e-----~k~-------~~~--~~t~~~-   68 (276)
T cd07306           4 YFDIGKSAKDLLTKGYNFGAWKLDVKTKTPNGVEFTSTGSKKPDTGKVSGSLE-----AKY-------KIK--GLTLTQ-   68 (276)
T ss_pred             eeccccchhhcccCCCCCCCEEEEEEEECCCCeEEEEEEEeCCCCceEEEEEE-----EEE-------EeC--CEEEEE-
Confidence            445689999954    3699999999999999999999999999999999999     777       444  433333 


Q ss_pred             EEEecccceEEEEEEEecCCCCcceEEEEEEecc-ceeeeeeeeeeecCceEEeeeEEeecceeEeEEEEEeccCccccc
Q psy5108         175 SSNIIDGARLAANTSFAPQTGDKTVKLSGEYKNS-LAAVNLESEFKSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKA  253 (345)
Q Consensus       175 ~~~l~~GLK~~l~~~~~p~~~~ks~kL~~~y~~~-~~~~~~~~~l~~~~P~v~~s~v~g~~g~~lG~e~~yd~~~~~~tk  253 (345)
                                    +|+++     +.|.++...+ .+.                      +++-+-.+..|.|..++ ..
T Consensus        69 --------------k~~t~-----n~l~t~v~~~~~~~----------------------~glk~~~~~~~~p~~~~-~s  106 (276)
T cd07306          69 --------------KWNTD-----NVLLTEITIEDLLA----------------------PGLKLTLDTTFPPNTGK-KS  106 (276)
T ss_pred             --------------EEeCC-----CceeEEEEECcccC----------------------CcceEEEEEEECCCCCC-ce
Confidence                          66554     3444444422 221                      34444455678877555 67


Q ss_pred             eeEEeeEEcCceEEEEEecC--CCceeeeEEEEccCceeEEEEEEEeccC-CCceEEEEEEEecCCCcEEEEEEcCCCeE
Q psy5108         254 NRLSLGFVGSDFVFHTNVDD--GKLFGGTVYQKLGPKLETGVQLAWSSES-NDTKFAFGCKYDLENQASVRAKVNNASQI  330 (345)
Q Consensus       254 ~~~~lgY~~~d~~~s~~l~n--~~~~~~S~~~kv~~~~~vGae~~~~~~~-~~~~~~vG~ky~ld~~~~lKAKvnn~g~v  330 (345)
                      ..+.++|.++.+.+.+.+..  ...+.+|..... ++|.+|+|+.|+..+ .-....+|++|.= ++.++.++++|...+
T Consensus       107 ~kl~~~y~~~~~~~~~~v~~~~~p~~~~s~~~g~-~~~~~G~e~~yd~~~~~~~~~~~~~~Y~~-~d~~~s~~l~~~~~l  184 (276)
T cd07306         107 GKLKAGYKHDPININADVDLNKGPLVGASAVLGY-KGFLLGAEVVYDTAKSKFTKYNFALGYTN-GDFELSLKLNNGKTL  184 (276)
T ss_pred             EEEEEEEecCCeeEEEEecccCCCeeEEEEEecc-cceEEEEEEEEeccCCcEeeEEEEEEEec-CCeEEEEEECCCCEE
Confidence            78999999999888877654  455666655544 899999999999876 3456667777753 899999999999999


Q ss_pred             EEEEEEEccCCcee
Q psy5108         331 GLGYSQKLNDALSL  344 (345)
Q Consensus       331 gl~y~qkL~p~v~l  344 (345)
                      .++|.|++.|++.+
T Consensus       185 ~~S~~~kv~~~l~~  198 (276)
T cd07306         185 RGSYFHKVSPRLAV  198 (276)
T ss_pred             EEEEEEEcCCCeEE
Confidence            99999999998765

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.

>KOG3126|consensus

Probab=99.60  E-value=1.4e-14  Score=137.38  Aligned_cols=186  Identities=25%  Similarity=0.378  Sum_probs=145.8

Q ss_pred             eeeccccccceee----eeeEEEEEeeecCCCeeeeeccccccccCceecceeeeeccccccceeeEEEecCCCceEEEE
Q psy5108          99 VFHTNVSSRQIFN----IDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNVLTTEV  174 (345)
Q Consensus        99 ~~~~~~~~rD~y~----~g~~~ldvkTkt~ngv~ft~~g~~~~~~~~v~g~le~~~k~~~~~Glt~t~~w~t~n~l~tei  174 (345)
                      ..+-||.+||.|+    +|.|+++|+|++++||+|+++|+++++.+++.|++|     .+|       +|...|.++++ 
T Consensus         7 y~digK~ArDl~~kgy~~g~~~~~~~t~t~~gv~ftssg~~~~~~~~v~gsle-----~k~-------~~~~~glt~t~-   73 (281)
T KOG3126|consen    7 YADLGKLARDLFNKGYGFGLWKLDLKTKTESGVEFTSSGSVNTDTGKVKGSLE-----TKY-------KDKDYGLTLTE-   73 (281)
T ss_pred             hhhhhhHHHHHhhCCCCCCcEEEEEEeeccCcEEEEeeeccccceeeeeeeeE-----EEE-------eeccCceEEEE-
Confidence            4566999999654    899999999999999999999999999999999999     999       99999999988 


Q ss_pred             EEEecccceEEEEEEEecCCCCcceEEEEEEe-ccceeeeeeeeeeecCceEEeeeEEeecceeEeEEEEEeccCccccc
Q psy5108         175 SSNIIDGARLAANTSFAPQTGDKTVKLSGEYK-NSLAAVNLESEFKSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKA  253 (345)
Q Consensus       175 ~~~l~~GLK~~l~~~~~p~~~~ks~kL~~~y~-~~~~~~~~~~~l~~~~P~v~~s~v~g~~g~~lG~e~~yd~~~~~~tk  253 (345)
                                    .|+.+     +.|.++.. ++.+.                      +++.+..+..|-+..++ ..
T Consensus        74 --------------kw~Td-----n~L~t~I~~~~~~~----------------------pglk~~~~~s~~p~~~~-ks  111 (281)
T KOG3126|consen   74 --------------KWNTD-----NTLGTEITVEDQLA----------------------PGLKLTLDSSFSPNTGK-KS  111 (281)
T ss_pred             --------------EeecC-----CccceEEEEccccC----------------------CceEEEEEEeecCcccc-cc
Confidence                          77655     44555555 24344                      45555556677776665 67


Q ss_pred             eeEEeeEEcCceEEEEE--ecCCCceeeeEEEEccCceeEEEEEEEeccCC---CceEEEEEEEecCCCcEEEEEEcCCC
Q psy5108         254 NRLSLGFVGSDFVFHTN--VDDGKLFGGTVYQKLGPKLETGVQLAWSSESN---DTKFAFGCKYDLENQASVRAKVNNAS  328 (345)
Q Consensus       254 ~~~~lgY~~~d~~~s~~--l~n~~~~~~S~~~kv~~~~~vGae~~~~~~~~---~~~~~vG~ky~ld~~~~lKAKvnn~g  328 (345)
                      ..+.++|..+.+.++..  +.....+.+|... -.+.|.+|+++.|+..++   ..++++|+..   +++++...+||.+
T Consensus       112 ~Klk~~y~~~~~~~~~~~~~~~~P~i~~s~v~-g~~g~l~G~~~~fDt~~~~~t~~n~~lgy~~---~d~~l~~~~nn~~  187 (281)
T KOG3126|consen  112 GKLKLSYARDHFNLGADDFLTANPLILGSLVL-GHEGWLLGYETTFDTASGKLTKYNAALGYTT---EDFTLHLNLNNGT  187 (281)
T ss_pred             eeeecccccccceeeeccccccCCeEEEEEEe-cccceEEEEeEEEeccCCcEeeEEEEEEeec---CCcEEEEEecccc
Confidence            88899999998888762  1112334443222 257899999999999874   6677777765   8999999999999


Q ss_pred             eEEEEEEEEccCCce
Q psy5108         329 QIGLGYSQKLNDALS  343 (345)
Q Consensus       329 ~vgl~y~qkL~p~v~  343 (345)
                      .+..+++|++.+.+.
T Consensus       188 ~~~~s~yq~v~~~~~  202 (281)
T KOG3126|consen  188 EFLASIYQRVNEKLE  202 (281)
T ss_pred             hhhhhhhhhhcchhe
Confidence            999999999988743

>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane

Probab=99.43  E-value=2.6e-11  Score=115.66  Aligned_cols=185  Identities=25%  Similarity=0.384  Sum_probs=130.7

Q ss_pred             cccccceee---eeeEEEEEeeecCCCeeeeeccccccc----cCceecceeeeeccccccceeeEEEecCCCceEEEEE
Q psy5108         103 NVSSRQIFN---IDVIKIDLKTKTDSGVEFNSGGTAQLE----SGKIFGTLESKYKAKNYAGLTFSEKWNTDNVLTTEVS  175 (345)
Q Consensus       103 ~~~~rD~y~---~g~~~ldvkTkt~ngv~ft~~g~~~~~----~~~v~g~le~~~k~~~~~Glt~t~~w~t~n~l~tei~  175 (345)
                      +|.+||.++   ...+++||+|.+++  +|++.|.....    .+++.+++|     .++       .+.+.+...++  
T Consensus         6 gk~ardll~~~~~~g~k~~v~~~~~~--~f~~s~~~~~~~~~~~~~~~~~~~-----~k~-------~~~~~~~t~~~--   69 (274)
T cd07303           6 GKSARDLFTKGYGGGIKLDVKTKSEL--EFTSSGSANTETIESTTKVGGSLE-----TKY-------RWSPYGLTFTE--   69 (274)
T ss_pred             hhhhHHhcccCCCCCEEEEEEecCCC--ccEEcccccccccCCCceEEEEEE-----Eee-------eecCCCeEEEE--
Confidence            566677555   11499999999998  69999988754    678888888     777       66666655555  


Q ss_pred             EEecccceEEEEEEEecCCCCcceEEEEEEeccceeeeeeeeeeecCceEEeeeEEeecceeEeEEEEEeccCcccccee
Q psy5108         176 SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANR  255 (345)
Q Consensus       176 ~~l~~GLK~~l~~~~~p~~~~ks~kL~~~y~~~~~~~~~~~~l~~~~P~v~~s~v~g~~g~~lG~e~~yd~~~~~~tk~~  255 (345)
                                   .|.++.   .+.+++++. +.+.                      +++.+=+++.+++.+++ ....
T Consensus        70 -------------~~~~dn---~~~~~~~~~-~~~~----------------------~glk~~~~~~~~~~~~~-~~~q  109 (274)
T cd07303          70 -------------KWNTDN---TLGLEITVE-DQLS----------------------RGLKSTFDSSFSPNTGK-KNAK  109 (274)
T ss_pred             -------------EEEcCC---cceEEEEEe-cccC----------------------CCeEEEEEEEECCCCcc-EEEE
Confidence                         454441   122222222 1222                      23333344566665554 6788


Q ss_pred             EEeeEEcCceEEEEEecCCCceeeeEEEEccCceeEEEEEEEeccC--CCceEEEEEEEecCCCcEEEEEEcCCCeEEEE
Q psy5108         256 LSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGPKLETGVQLAWSSES--NDTKFAFGCKYDLENQASVRAKVNNASQIGLG  333 (345)
Q Consensus       256 ~~lgY~~~d~~~s~~l~n~~~~~~S~~~kv~~~~~vGae~~~~~~~--~~~~~~vG~ky~ld~~~~lKAKvnn~g~vgl~  333 (345)
                      +...|..+++.+.+.+.+...+-.++.+.+.++|.+|+|+.|+..+  ....+++++.-.. ++..+.++++|...+.++
T Consensus       110 ~~~~y~~~~~~~~l~~~~~gp~v~~~~~~g~~~~~~G~e~~yd~~~~~~~~~~~~~y~~~y-~d~~~s~~l~~~~~l~~S  188 (274)
T cd07303         110 IKTGYKRINLGCDVDFDIAGPLIRGALVLGYEGWLAGYQMVFETVSRVTQSNFAVGYKTDY-NEFQAHTNVNDGTEFGGS  188 (274)
T ss_pred             EeccEEcCCeeEEEEeecCCCEEEEEEEEeecceEEEEEEEEeccccccccceEEEEEccC-CCeEEEEEEcCCCeEEEE
Confidence            8899999999999998664455567788889999999999999854  3456666654333 788889999998999999


Q ss_pred             EEEEccCCcee
Q psy5108         334 YSQKLNDALSL  344 (345)
Q Consensus       334 y~qkL~p~v~l  344 (345)
                      |.||++|++.+
T Consensus       189 y~hkvs~~~~~  199 (274)
T cd07303         189 IYHKVNDKLEV  199 (274)
T ss_pred             EEEEcCCceEE
Confidence            99999998875

The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.

>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]

Probab=99.36  E-value=3.1e-10  Score=106.66  Aligned_cols=183  Identities=23%  Similarity=0.396  Sum_probs=121.6

Q ss_pred             cccccce----eeeeeEEEEEeeecCCCeeeeeccccccccC-ceecceeeeeccccccceeeEEEecCCCceEEEEEEE
Q psy5108         103 NVSSRQI----FNIDVIKIDLKTKTDSGVEFNSGGTAQLESG-KIFGTLESKYKAKNYAGLTFSEKWNTDNVLTTEVSSN  177 (345)
Q Consensus       103 ~~~~rD~----y~~g~~~ldvkTkt~ngv~ft~~g~~~~~~~-~v~g~le~~~k~~~~~Glt~t~~w~t~n~l~tei~~~  177 (345)
                      +|.+||+    |++++++|||++++++++.|++.++..+... ++.+.+|       .       +.             
T Consensus         9 ~k~akdll~~~y~f~g~kl~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~-------~-------~~-------------   61 (273)
T PF01459_consen    9 GKEAKDLLPKDYNFDGFKLDVKKKTPNGPNFTVSHSFSLGTSVPSSYSFG-------A-------KY-------------   61 (273)
T ss_dssp             CHCCHHHHCTTSSTTEEEEEEEEE-TTCEEEEEEEEEETTTT--EEEEEE-------E-------EE-------------
T ss_pred             hHHHHHhccCCCCCcCEEEEEEecccCcceEEEEEEEecCCCCccceEEE-------E-------EE-------------
Confidence            5566663    5789999999999999999999998776555 4444444       1       11             


Q ss_pred             ecccceEEEEEEEecCCCCcceEEEEEEeccceeeeeeeeeeecCceEEeeeEEeecceeEeEEEEEeccCccccceeEE
Q psy5108         178 IIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLS  257 (345)
Q Consensus       178 l~~GLK~~l~~~~~p~~~~ks~kL~~~y~~~~~~~~~~~~l~~~~P~v~~s~v~g~~g~~lG~e~~yd~~~~~~tk~~~~  257 (345)
                       . |.++.+....  +   ..+.+++++.+. +.                      ++|.+-.++.+.+.+.. ....+.
T Consensus        62 -~-~~~~~~~~~~--d---~~~~~~~~~~~~-~~----------------------~~l~~~~~~~~~~~~~~-~~~~l~  110 (273)
T PF01459_consen   62 -K-GPKLTVKGDT--D---NDGNLEASVRNK-LS----------------------PGLKLKLSAQLSPGSGK-KSAQLE  110 (273)
T ss_dssp             -E-CEEEEEEEET--T---TEEEEEEEEESS-TT----------------------TTEEEEEEEEE-TTTS--EEEEEE
T ss_pred             -e-CceeeEEEEe--C---CcccEEEEEecc-cC----------------------cceEEEEEEEEeecCCc-eeeEEE
Confidence             1 2222222221  1   124455555432 22                      22222223334444333 678889


Q ss_pred             eeEEcCceEEEEEecC--CCceeeeEEEEccCceeEEEEEEEeccCCCce-----EEEEEEEecCCCcEEEEEE-cCCCe
Q psy5108         258 LGFVGSDFVFHTNVDD--GKLFGGTVYQKLGPKLETGVQLAWSSESNDTK-----FAFGCKYDLENQASVRAKV-NNASQ  329 (345)
Q Consensus       258 lgY~~~d~~~s~~l~n--~~~~~~S~~~kv~~~~~vGae~~~~~~~~~~~-----~~vG~ky~ld~~~~lKAKv-nn~g~  329 (345)
                      +.|..+++.+.+.+.+  ...+.+|+.|.+.|+|.+|+|+.|+...+...     +.++.+|. +++.++.+.+ ++...
T Consensus       111 ~~y~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~~~lG~e~~~~~~~~~~~~~~~~~~~~~~Y~-~~~~~~~~~~~~~~~~  189 (273)
T PF01459_consen  111 ADYKGDDFNATFKVDNDNNPIFNASYVQSVTPNLALGAEATYDLSSGKSSKYNAGLSYAARYT-HPDYTASATLSNNFGT  189 (273)
T ss_dssp             EEEEETTEEEEEEEEESTS-EEEEEEEEEET-TEEEEEEEEEETTTTCEEEEEEEEEEEET-----TEEEEEEE-ETTTE
T ss_pred             EEEecCCEEEEEEEcccCCCcEEEEEEEeccccEEEEEEEEEecccCCcCcceEEEEEecccc-ceeEEEEEEEcCCCCE
Confidence            9999999999998775  67789999999999999999999998875444     44445444 3699999999 78999


Q ss_pred             EEEEEEEEccCCcee
Q psy5108         330 IGLGYSQKLNDALSL  344 (345)
Q Consensus       330 vgl~y~qkL~p~v~l  344 (345)
                      +.++|.|++++.+.+
T Consensus       190 l~~sy~~k~~~~~~~  204 (273)
T PF01459_consen  190 LTASYFQKVNDKLQL  204 (273)
T ss_dssp             EEEEEEEESSTTEEE
T ss_pred             EEEEEEEEeccceee
Confidence            999999999998875

The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.

>KOG3296|consensus

Probab=99.20  E-value=1.3e-11  Score=118.11  Aligned_cols=176  Identities=18%  Similarity=0.232  Sum_probs=139.8

Q ss_pred             EecCCCceEEEEEEEecccceEEEEEEEecCCCCcceEEEEEEeccceeeeeeeeeeecCceEEeeeEEe-------ecc
Q psy5108         163 KWNTDNVLTTEVSSNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLG-------YNG  235 (345)
Q Consensus       163 ~w~t~n~l~tei~~~l~~GLK~~l~~~~~p~~~~ks~kL~~~y~~~~~~~~~~~~l~~~~P~v~~s~v~g-------~~g  235 (345)
                      ..+++|.+..++-+.+.++|...+..++  +   .+..++.++..+.+.......+...+|.+..++++.       .+.
T Consensus       102 ~vD~~Gslna~l~~~l~~~Lr~K~~~q~--~---~~k~ve~q~~~e~~g~d~t~~~~~~n~~~~~sgi~v~~~lqsvT~~  176 (308)
T KOG3296|consen  102 DVDNDGSLNARLIHQLTDNLRSKVALQI--Q---QSKEVESQVTGEYRGRDYTLTLPLGNPDLGESGIYVASYLQSVTPR  176 (308)
T ss_pred             ecCCCCchhheeecccchhhHHHHHHHh--c---chhhhccccccceecccccccccccCcccccchHHHHHHHhhhccc
Confidence            6888999999987777888776665544  1   112566777766666655556666788865655442       399


Q ss_pred             eeEeEEEEEec-cCccccceeEEeeEEcCceEEEEEecCCCceeeeEEEEccCceeEEEEEEEeccCCCceEEEEEEEec
Q psy5108         236 WLCGYSLKFDS-KDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDL  314 (345)
Q Consensus       236 ~~lG~e~~yd~-~~~~~tk~~~~lgY~~~d~~~s~~l~n~~~~~~S~~~kv~~~~~vGae~~~~~~~~~~~~~vG~ky~l  314 (345)
                      |.+|.|+.|.. .........++.+|...++.+++++.- ..++++||||.+++++.|+|+.++..-+++..+++++|++
T Consensus       177 LsLG~El~~~~~~~~~~s~ls~a~RY~~~~~~~~~t~g~-~g~~~~y~~r~~~~~~~~ve~~~~~~~~~~~~t~a~~~~l  255 (308)
T KOG3296|consen  177 LSLGGELLYQRRPGPEESGLSYAGRYEHSNWDATVTLGQ-QGLTGTYYQRAVEKLQMGVEFETNTRLQSTDVTAAYGYDL  255 (308)
T ss_pred             ccccceeEeccCCCccccceeeeeeeeecceeeEEeccc-ccceehhhhhhhhhhccceeEeeecccCCcceEEEEEeec
Confidence            99999999998 333457789999999999888888864 4678999999999999999999998878888888888887


Q ss_pred             C-CCcEEEEEEcCCCeEEEEEEEEccCCcee
Q psy5108         315 E-NQASVRAKVNNASQIGLGYSQKLNDALSL  344 (345)
Q Consensus       315 d-~~~~lKAKvnn~g~vgl~y~qkL~p~v~l  344 (345)
                      . +++.+|++||++|.+++.++.||-+.+++
T Consensus       256 ~~~~s~~rg~vDSn~~v~~~lek~L~l~l~~  286 (308)
T KOG3296|consen  256 PTAQSVFRGSVDSNWSVGAVLEKKLPLPLTL  286 (308)
T ss_pred             cCccceEEEEeccCceehhhhHhhcCCCcee
Confidence            6 78999999999999999999999777765

>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40)

Probab=98.97  E-value=2.2e-07  Score=88.82  Aligned_cols=140  Identities=16%  Similarity=0.285  Sum_probs=105.4

Q ss_pred             cceEEEEEEeccc--eeeeeeeeeeecCceEEeeeEEee---cceeEeEEEEEeccCccccceeEEeeEEcCceEEEEEe
Q psy5108         197 KTVKLSGEYKNSL--AAVNLESEFKSLNPVISAAGVLGY---NGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNV  271 (345)
Q Consensus       197 ks~kL~~~y~~~~--~~~~~~~~l~~~~P~v~~s~v~g~---~g~~lG~e~~yd~~~~~~tk~~~~lgY~~~d~~~s~~l  271 (345)
                      ..-.+.+.|..+.  ..+.+++  |   |.-+.++-+-+   +++..-  +..+....+...+.+.+.|..+||++.+++
T Consensus        53 ~~y~f~a~y~~~~~~~~~~~~i--d---~~g~l~~~~~~~~~~~~~~k--~~~~~~~~~~~~~q~~~dy~g~d~t~~l~~  125 (279)
T cd07305          53 SSYQFGATYVGDKQYPFLQGDI--D---NDGNLNARIIHQLGDRLRSK--LQAQLQDSKFNMSQLELDYRGDDFTASLKL  125 (279)
T ss_pred             CCcEeeeEEecCCCcEEEEEEe--C---CCCceeEEEEeccCcceEEE--EEEEecCCCceeEEEEEEEcCCceEEEEEE
Confidence            3567888888665  4443333  2   22222232222   344333  333444445578999999999999999996


Q ss_pred             cCC------CceeeeEEEEccCceeEEEEEEEe--ccCCCceEEEEEEEecCCCcEEEEEEcCCCeEEEEEEEEccCCce
Q psy5108         272 DDG------KLFGGTVYQKLGPKLETGVQLAWS--SESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKLNDALS  343 (345)
Q Consensus       272 ~n~------~~~~~S~~~kv~~~~~vGae~~~~--~~~~~~~~~vG~ky~ld~~~~lKAKvnn~g~vgl~y~qkL~p~v~  343 (345)
                      .|.      ..+.++|.|+|.++|.+|+|+.|.  .......+.+|++|.- ++.++.+.+++.+.+.++|.|+++|++.
T Consensus       126 ~n~~~~~~sg~~~~~ylq~vt~~l~lG~E~~~~~~~~~~~~~~~~~~rY~~-~d~~~s~~l~~~~~l~asY~~kvs~~l~  204 (279)
T cd07305         126 ANPDILNETGIYVASYLQSVTPKLALGGELVYQRVPGNGISVLSYAARYTA-GNWIASGQLGAQGGLHLSYYRKLSDKLQ  204 (279)
T ss_pred             eCCCcccccEEEEEEEEEEccCcEEEEEEEEEEEcCCCCceeEEEEEEEcc-CCEEEEEEEcCCCeEEEEEEEEcccceE
Confidence            653      567999999999999999999999  4667888999999986 7899999999999999999999999987


Q ss_pred             e
Q psy5108         344 L  344 (345)
Q Consensus       344 l  344 (345)
                      +
T Consensus       205 l  205 (279)
T cd07305         205 L  205 (279)
T ss_pred             e
Confidence            6

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.

>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40

Probab=97.69  E-value=0.002  Score=56.89  Aligned_cols=78  Identities=12%  Similarity=0.169  Sum_probs=58.4

Q ss_pred             EecCCCceEEEEEEEecccceEEEEEEEecCCCCcceEEEEEEeccceeeeeeeeeeecCceE-Ee--eeEE-e------
Q psy5108         163 KWNTDNVLTTEVSSNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVI-SA--AGVL-G------  232 (345)
Q Consensus       163 ~w~t~n~l~tei~~~l~~GLK~~l~~~~~p~~~~ks~kL~~~y~~~~~~~~~~~~l~~~~P~v-~~--s~v~-g------  232 (345)
                      ..++++.+.+.+.+++.+.+...+.+++... .....+++.+|+.+++++.    +++.+|.+ +.  ++++ +      
T Consensus        74 ~id~dG~l~ar~~~~~~~~~~~K~~~Q~~~~-~~~~~Q~e~DY~G~Dft~~----lk~~Np~~~~~~~sGi~v~sylQsV  148 (161)
T TIGR00989        74 NLDNDGAVSTRLNYRWGDRTISKVQFQISGG-QPDMCQFEHDHLGDDFSAS----LKAINPSFLEKGLTGIFVGSYLQSV  148 (161)
T ss_pred             EeCCCCCEEEEEEEeeCcceeEEEEEEecCC-CCceEEEEEEecCCeEEEE----EEEcCcccccccceEEEEEeeeehh
Confidence            6677788888877777788877777776432 2358899999999999874    45588986 33  5554 3      


Q ss_pred             ecceeEeEEEEEe
Q psy5108         233 YNGWLCGYSLKFD  245 (345)
Q Consensus       233 ~~g~~lG~e~~yd  245 (345)
                      .|+|++|.|+.|+
T Consensus       149 Tp~LaLG~E~~yq  161 (161)
T TIGR00989       149 TPRLGLGLEALWQ  161 (161)
T ss_pred             CcceeeeeeeEeC
Confidence            2999999999884

translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.

>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40

Probab=94.22  E-value=1.5  Score=38.92  Aligned_cols=91  Identities=19%  Similarity=0.177  Sum_probs=66.1

Q ss_pred             ccceeEEeeEEcCceEEEEEecCCCceeeeEEEEccCceeEEEEEEEecc-CCCceEEEEEEEecCCCcEEEEEEcC---
Q psy5108         251 LKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGPKLETGVQLAWSSE-SNDTKFAFGCKYDLENQASVRAKVNN---  326 (345)
Q Consensus       251 ~tk~~~~lgY~~~d~~~s~~l~n~~~~~~S~~~kv~~~~~vGae~~~~~~-~~~~~~~vG~ky~ld~~~~lKAKvnn---  326 (345)
                      +..|.|++-|..+...+-..+++.-.+.+=+-|.+++++..=+++....+ .....+++-++   -+|.++..|+-|   
T Consensus        55 ~p~Y~FgA~y~~~~~~l~G~id~dG~l~ar~~~~~~~~~~~K~~~Q~~~~~~~~~Q~e~DY~---G~Dft~~lk~~Np~~  131 (161)
T TIGR00989        55 LPPYAFSALFGTNQLFAQGNLDNDGAVSTRLNYRWGDRTISKVQFQISGGQPDMCQFEHDHL---GDDFSASLKAINPSF  131 (161)
T ss_pred             CCCceeeeEecCCcEEEEEEeCCCCCEEEEEEEeeCcceeEEEEEEecCCCCceEEEEEEec---CCeEEEEEEEcCccc
Confidence            34588999998877777778887677888888889888766555554422 23344443333   278888888777   


Q ss_pred             -----CCeEEEEEEEEccCCcee
Q psy5108         327 -----ASQIGLGYSQKLNDALSL  344 (345)
Q Consensus       327 -----~g~vgl~y~qkL~p~v~l  344 (345)
                           .|.+.+.|.|.+.|++.|
T Consensus       132 ~~~~~sGi~v~sylQsVTp~LaL  154 (161)
T TIGR00989       132 LEKGLTGIFVGSYLQSVTPRLGL  154 (161)
T ss_pred             ccccceEEEEEeeeehhCcceee
Confidence                 468999999999999876

translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.

>PRK10716 long-chain fatty acid outer membrane transporter; Provisional

Probab=89.58  E-value=26  Score=35.71  Aligned_cols=71  Identities=17%  Similarity=0.342  Sum_probs=50.5

Q ss_pred             CCceeeeEEEEccCceeEEEEEEEecc-----------------------CCCceEEEEEEEecCCCcEEEEEE--c---
Q psy5108         274 GKLFGGTVYQKLGPKLETGVQLAWSSE-----------------------SNDTKFAFGCKYDLENQASVRAKV--N---  325 (345)
Q Consensus       274 ~~~~~~S~~~kv~~~~~vGae~~~~~~-----------------------~~~~~~~vG~ky~ld~~~~lKAKv--n---  325 (345)
                      -+.+..++.|+++|+|.+.+.+.|..=                       ++...+++|.+|++.+..++|+=+  +   
T Consensus       286 P~~~~lg~~~~~~~~~~l~~d~~wt~WS~~~~l~i~~~~g~~~~~~~~~w~D~w~~~~G~~Y~~n~~l~LRaG~~yd~sp  365 (435)
T PRK10716        286 PEMWEVSGYNRVAPQWAIHYSLAYTSWSQFQELKATSSNGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSP  365 (435)
T ss_pred             CcEEEEEeEEecCCcEEEEEEEEEeeecccceEEEEeCCCcceecccccceeeeEEEeeEEEECCCCeEEEEeeEeccCC
Confidence            356788999999999999999988321                       125678889999988888888754  1   


Q ss_pred             -------------CCCeEEEEEEEEccCCcee
Q psy5108         326 -------------NASQIGLGYSQKLNDALSL  344 (345)
Q Consensus       326 -------------n~g~vgl~y~qkL~p~v~l  344 (345)
                                   +...++++...++++++++
T Consensus       366 v~~~~r~~~~Pd~dr~~~s~G~~y~~~~~~~v  397 (435)
T PRK10716        366 VPAQNRSISIPDQDRFWLSAGTTYAFNKDASV  397 (435)
T ss_pred             CCcCcccccccCCCCeEEEeeeEEEcCCCcEE
Confidence                         1223666666666665544

>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function

Probab=86.20  E-value=36  Score=33.41  Aligned_cols=98  Identities=15%  Similarity=0.114  Sum_probs=63.3

Q ss_pred             CceEEeeeEEee-------------cceeEeEEEEEeccCccccceeEEeeEEcCce---EEEEEecCCCceeeeEEEEc
Q psy5108         222 NPVISAAGVLGY-------------NGWLCGYSLKFDSKDAKLKANRLSLGFVGSDF---VFHTNVDDGKLFGGTVYQKL  285 (345)
Q Consensus       222 ~P~v~~s~v~g~-------------~g~~lG~e~~yd~~~~~~tk~~~~lgY~~~d~---~~s~~l~n~~~~~~S~~~kv  285 (345)
                      .+.+.+.+-+|+             .++.+.+.+.|.+...  +...+.+.-.-.+.   .....+  -..+.+++-|.+
T Consensus       232 t~~~~g~~~~Gy~~~~~d~~~~~d~~g~~~~~~l~w~pt~~--t~~~l~~~r~~~~~~~~~~~~~~--~~~~~~~~~h~~  307 (381)
T PF10082_consen  232 TGKTRGEAKVGYQRRDFDDPSRRDFSGPSWDASLTWSPTPK--TTVTLSASRSIEESTDAGGSYVR--TTSVSLGWTHQL  307 (381)
T ss_pred             cCcEEEEEEEEEEEeeccCCCccCCCceEEEEEEEEeccCc--eEEEEEEEEEEcCcccCCCcEEE--EEEEEEEEEEEe
Confidence            566777777765             6778888888876554  34444444333222   111112  145678889999


Q ss_pred             cCceeEEEEEEEeccC--------CCceEEEEEEEecCCCcEEEEE
Q psy5108         286 GPKLETGVQLAWSSES--------NDTKFAFGCKYDLENQASVRAK  323 (345)
Q Consensus       286 ~~~~~vGae~~~~~~~--------~~~~~~vG~ky~ld~~~~lKAK  323 (345)
                      .+++.+.+.+.|....        ....+.+|..|.+.+...+.+.
T Consensus       308 ~~~l~~~~~~~~~~~~y~~~~r~D~~~~~~~~~~y~~~r~~~~~~~  353 (381)
T PF10082_consen  308 TPRLSLSLSAGYENRDYQGSDREDDTYSAGLGLTYRLNRWLSLSAG  353 (381)
T ss_pred             eeeEEEEEEEEEEEeEcCCCCceeeEEEEEEEEEEEecCCEEEEEE
Confidence            9999998888887542        2567888888887666666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	345
2k4t_A	291	Solution Structure Of Human Vdac-1 In Ldao Micelles		3e-53
2jk4_A	294	Structure Of The Human Voltage-Dependent Anion Chan		3e-53
3emn_X	295	The Crystal Structure Of Mouse Vdac1 At 2.3 A Resol		7e-53

>pdb|2K4T|A Chain A, Solution Structure Of Human Vdac-1 In Ldao Micelles Length = 291

Iteration: 1
 Score =  205 bits (521), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 104/246 (42%), Positives = 156/246 (63%), Gaps = 7/246 (2%)
Query: 105 SSRQIFN----IDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTF 160
           S+R +F       +IK+DLKTK+++G+EF S G+A  E+ K+ G+LE+KY+   Y GLTF
Sbjct: 13  SARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLETKYRWTEY-GLTF 71
Query: 161 SEKWNTDNVLTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEF 218
           +EKWNTDN L TE++    +  G +L  ++SF+P TG K  K+   YK     +  + +F
Sbjct: 72  TEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDMDF 131
Query: 219 KSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFG 278
               P I  A VLGY GWL GY + F++  +++  +  ++G+   +F  HTNV+DG  FG
Sbjct: 132 DIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFG 191
Query: 279 GTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKL 338
           G++YQK+  KLET V LAW++ +++T+F    KY ++  A   AKVNN+S IGLGY+Q L
Sbjct: 192 GSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNSSLIGLGYTQTL 251
Query: 339 NDALSL 344
              + L
Sbjct: 252 KPGIKL 257

>pdb|2JK4|A Chain A, Structure Of The Human Voltage-Dependent Anion Channel Length = 294

Iteration: 1
 Score =  205 bits (521), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 104/246 (42%), Positives = 156/246 (63%), Gaps = 7/246 (2%)
Query: 105 SSRQIFN----IDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTF 160
           S+R +F       +IK+DLKTK+++G+EF S G+A  E+ K+ G+LE+KY+   Y GLTF
Sbjct: 16  SARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLETKYRWTEY-GLTF 74
Query: 161 SEKWNTDNVLTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEF 218
           +EKWNTDN L TE++    +  G +L  ++SF+P TG K  K+   YK     +  + +F
Sbjct: 75  TEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDMDF 134
Query: 219 KSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFG 278
               P I  A VLGY GWL GY + F++  +++  +  ++G+   +F  HTNV+DG  FG
Sbjct: 135 DIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFG 194
Query: 279 GTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKL 338
           G++YQK+  KLET V LAW++ +++T+F    KY ++  A   AKVNN+S IGLGY+Q L
Sbjct: 195 GSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNSSLIGLGYTQTL 254
Query: 339 NDALSL 344
              + L
Sbjct: 255 KPGIKL 260

>pdb|3EMN|X Chain X, The Crystal Structure Of Mouse Vdac1 At 2.3 A Resolution Length = 295

Iteration: 1
 Score =  204 bits (518), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 104/246 (42%), Positives = 156/246 (63%), Gaps = 7/246 (2%)
Query: 105 SSRQIFN----IDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTF 160
           S+R +F       +IK+DLKTK+++G+EF S G+A  E+ K+ G+LE+KY+   Y GLTF
Sbjct: 25  SARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEY-GLTF 83
Query: 161 SEKWNTDNVLTTEVS--SNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEF 218
           +EKWNTDN L TE++    +  G +L  ++SF+P TG K  K+   YK     +  + +F
Sbjct: 84  TEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDF 143
Query: 219 KSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFG 278
               P I  A VLGY GWL GY + F++  +++  +  ++G+   +F  HTNV+DG  FG
Sbjct: 144 DIAGPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFG 203
Query: 279 GTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKL 338
           G++YQK+  KLET V LAW++ +++T+F    KY ++  A   AKVNN+S IGLGY+Q L
Sbjct: 204 GSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNSSLIGLGYTQTL 263
Query: 339 NDALSL 344
              + L
Sbjct: 264 KPGIKL 269

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	345
3emn_X	295	Voltage-dependent anion-selective channel protein;	2e-54
3emn_X	295	Voltage-dependent anion-selective channel protein;	2e-15

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A Length = 295

 Score =  179 bits (455), Expect = 2e-54
 Identities = 102/237 (43%), Positives = 151/237 (63%), Gaps = 3/237 (1%)

Query: 110 FNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNV 169
           +   +IK+DLKTK+++G+EF S G+A  E+ K+ G+LE+KY+   Y GLTF+EKWNTDN 
Sbjct: 34  YGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEY-GLTFTEKWNTDNT 92

Query: 170 LTTE--VSSNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISA 227
           L TE  V   +  G +L  ++SF+P TG K  K+   YK     +  + +F    P I  
Sbjct: 93  LGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRG 152

Query: 228 AGVLGYNGWLCGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGP 287
           A VLGY GWL GY + F++  +++  +  ++G+   +F  HTNV+DG  FGG++YQK+  
Sbjct: 153 ALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNK 212

Query: 288 KLETGVQLAWSSESNDTKFAFGCKYDLENQASVRAKVNNASQIGLGYSQKLNDALSL 344
           KLET V LAW++ +++T+F    KY ++  A   AKVNN+S IGLGY+Q L   + L
Sbjct: 213 KLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNSSLIGLGYTQTLKPGIKL 269

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A Length = 295

 Score = 74.8 bits (183), Expect = 2e-15
 Identities = 35/66 (53%), Positives = 49/66 (74%)

Query: 1  MAPPLYGDLGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESK 60
            PP Y DLGK ARD+F+KGY   +IK+DLKTK+++G+EF S G+A  E+ K+ G+LE+K
Sbjct: 14 AVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETK 73

Query: 61 YKAKNY 66
          Y+   Y
Sbjct: 74 YRWTEY 79

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	345
3emn_X	295	Voltage-dependent anion-selective channel protein;	100.0
3emn_X	295	Voltage-dependent anion-selective channel protein;	99.8
3bs0_A	439	TODX; beta barrel, outer membrane protein, transpo	87.78
3bry_A	441	TBUX; beta barrel, outer membrane protein, transpo	87.53
3prn_A	289	Porin; integral membrane protein, pore eyelet muta	87.02
3pgu_A	427	Long-chain fatty acid transport protein; outer mem	83.02

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A

Probab=100.00  E-value=1.7e-66  Score=496.89  Aligned_cols=255  Identities=46%  Similarity=0.870  Sum_probs=247.0

Q ss_pred             CC-CCCCCCcCCCccccCCCCCCCcceEEEEEEeCCCCeEEEEeeeeecCCCceEEEEEeeEeeeccccccccCcccccc
Q psy5108           1 MA-PPLYGDLGKHARDLFSKGYNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGWLCGYSLKFDS   79 (345)
Q Consensus         1 m~-p~~f~DigK~a~Dll~k~y~~~~~kl~~kt~~~~gv~~~~~~~~~~~~~~~~g~~~~k~~~~~~~~~~~~~~~~~~~   79 (345)
                      |+ ||+|+||||.|||||+|||+++.+||+|||+++|||+|+++|.++.+.++++|+||+||                  
T Consensus        13 ~~~pp~y~DigK~AkDll~kdy~~~~~kl~~kt~s~~gv~ft~~g~~~~~~~~v~g~le~ky------------------   74 (295)
T 3emn_X           13 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKY------------------   74 (295)
T ss_dssp             CCSCCCGGGTTHHHHHHHHTTCCTTEEEEEEECCCSSEEEEEEEEEEETTTCCEEEEEEEEE------------------
T ss_pred             cCCCCcccccccchHHhccCCcCCCCEEEEEEEEcCCCEEEEEEEEecCCCCceeeEEEEEE------------------
Confidence            54 99999999999999999999998899999999999999999999987899999999999                  


Q ss_pred             hhhHhhhcccccccccccceeeccccccceeeeeeEEEEEeeecCCCeeeeeccccccccCceecceeeeecccccccee
Q psy5108          80 KDAKLKANRLSLGFVGSDFVFHTNVSSRQIFNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLT  159 (345)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rD~y~~g~~~ldvkTkt~ngv~ft~~g~~~~~~~~v~g~le~~~k~~~~~Glt  159 (345)
                                                                                             ++++| ||+
T Consensus        75 -----------------------------------------------------------------------k~~~~-g~t   82 (295)
T 3emn_X           75 -----------------------------------------------------------------------RWTEY-GLT   82 (295)
T ss_dssp             -----------------------------------------------------------------------EETTT-TEE
T ss_pred             -----------------------------------------------------------------------EecCC-cEE
Confidence                                                                                   55889 999


Q ss_pred             eEEEecCCCceEEEEEEE--ecccceEEEEEEEecCCCCcceEEEEEEeccceeeeeeeeeeecCceEEeeeEEeeccee
Q psy5108         160 FSEKWNTDNVLTTEVSSN--IIDGARLAANTSFAPQTGDKTVKLSGEYKNSLAAVNLESEFKSLNPVISAAGVLGYNGWL  237 (345)
Q Consensus       160 ~t~~w~t~n~l~tei~~~--l~~GLK~~l~~~~~p~~~~ks~kL~~~y~~~~~~~~~~~~l~~~~P~v~~s~v~g~~g~~  237 (345)
                      ++|+|+|+|.|.|||+++  ++||||++++++|.|+++.|++||+++|+|++++++++++++..+|+++.++|+|+++|+
T Consensus        83 ~~~kw~t~n~l~t~i~~~~~l~~Glk~~~~~~~~P~~~~ks~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~g~~~~~  162 (295)
T 3emn_X           83 FTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWL  162 (295)
T ss_dssp             EEEEEETTSCEEEEEEEESSSSTTEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEEEETTEE
T ss_pred             EEEEEeCCCcEEEEEEEccccCCceEEEEEEEECCCCCCcceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEEeeCCEE
Confidence            999999999999999999  999999999999999988999999999999999999999987789999999999999999


Q ss_pred             EeEEEEEeccCccccceeEEeeEEcCceEEEEEecCCCceeeeEEEEccCceeEEEEEEEeccCCCceEEEEEEEecCCC
Q psy5108         238 CGYSLKFDSKDAKLKANRLSLGFVGSDFVFHTNVDDGKLFGGTVYQKLGPKLETGVQLAWSSESNDTKFAFGCKYDLENQ  317 (345)
Q Consensus       238 lG~e~~yd~~~~~~tk~~~~lgY~~~d~~~s~~l~n~~~~~~S~~~kv~~~~~vGae~~~~~~~~~~~~~vG~ky~ld~~  317 (345)
                      +|+|+.||++++++++++++++|+.+||+++++++|++.+++||||||++++++|+|+.|+.+.++++++||+||+||++
T Consensus       163 ~G~e~~yd~~~~~~t~~n~~~gY~~~d~~~s~~l~~~~~~~aSy~qkvs~~~~~g~e~~~~~~~~~~~~tvG~ky~ld~~  242 (295)
T 3emn_X          163 AGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPD  242 (295)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEEECSSEEEEEEEETTTEEEEEEEEECSSSEEEEEEEEEETTEEEEEEEEEEEECCSSS
T ss_pred             EEEEEEEEeCCCCeeeEEEEEEEcCCCEEEEEEECCCCeEEEEEEEECCCceEEEEEEEEeccCCCcEEEEEEEEEcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999889999999999999999


Q ss_pred             cEEEEEEcCCCeEEEEEEEEccCCceeC
Q psy5108         318 ASVRAKVNNASQIGLGYSQKLNDALSLN  345 (345)
Q Consensus       318 ~~lKAKvnn~g~vgl~y~qkL~p~v~lt  345 (345)
                      +++||||||+|.++++|+|+|+|+|+|+
T Consensus       243 ~~vKakvn~~g~v~~~y~~kl~p~v~lt  270 (295)
T 3emn_X          243 ACFSAKVNNSSLIGLGYTQTLKPGIKLT  270 (295)
T ss_dssp             EEEEEEEETTSEEEEEEEEEEETTEEEE
T ss_pred             CEEEEEECCCCEEEEEEEEecCCCcEEE
Confidence            9999999999999999999999999874

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A

Probab=99.80  E-value=3.1e-18  Score=163.32  Aligned_cols=190  Identities=26%  Similarity=0.421  Sum_probs=150.1

Q ss_pred             ceeeccccccce----eeeeeEEEEEeeecCCCeeeeeccccccccCceecceeeeeccccccceeeEEEecCCCceEEE
Q psy5108          98 FVFHTNVSSRQI----FNIDVIKIDLKTKTDSGVEFNSGGTAQLESGKIFGTLESKYKAKNYAGLTFSEKWNTDNVLTTE  173 (345)
Q Consensus        98 ~~~~~~~~~rD~----y~~g~~~ldvkTkt~ngv~ft~~g~~~~~~~~v~g~le~~~k~~~~~Glt~t~~w~t~n~l~te  173 (345)
                      .+.+-||++||.    ||+++|+|||||+++|||+|++.|++.+++++|+|+||     .+|       +|...++..++
T Consensus        18 ~y~DigK~AkDll~kdy~~~~~kl~~kt~s~~gv~ft~~g~~~~~~~~v~g~le-----~ky-------k~~~~g~t~~~   85 (295)
T 3emn_X           18 TYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLE-----TKY-------RWTEYGLTFTE   85 (295)
T ss_dssp             CGGGTTHHHHHHHHTTCCTTEEEEEEECCCSSEEEEEEEEEEETTTCCEEEEEE-----EEE-------EETTTTEEEEE
T ss_pred             cccccccchHHhccCCcCCCCEEEEEEEEcCCCEEEEEEEEecCCCCceeeEEE-----EEE-------EecCCcEEEEE
Confidence            345668999884    46899999999999999999999999999999999999     999       99999988887


Q ss_pred             EEEEecccceEEEEEEEecCCCCcceEEEEEEeccc-eeeeeeeeeeecCceEEeeeEEeecceeEeEEEEEeccCcccc
Q psy5108         174 VSSNIIDGARLAANTSFAPQTGDKTVKLSGEYKNSL-AAVNLESEFKSLNPVISAAGVLGYNGWLCGYSLKFDSKDAKLK  252 (345)
Q Consensus       174 i~~~l~~GLK~~l~~~~~p~~~~ks~kL~~~y~~~~-~~~~~~~~l~~~~P~v~~s~v~g~~g~~lG~e~~yd~~~~~~t  252 (345)
                                     +|+++     +.|.+++.-+. +.-++++.+                      +..|.|.+++ .
T Consensus        86 ---------------kw~t~-----n~l~t~i~~~~~l~~Glk~~~----------------------~~~~~P~~~~-k  122 (295)
T 3emn_X           86 ---------------KWNTD-----NTLGTEITVEDQLARGLKLTF----------------------DSSFSPNTGK-K  122 (295)
T ss_dssp             ---------------EEETT-----SCEEEEEEEESSSSTTEEEEE----------------------EEEEETTTTE-E
T ss_pred             ---------------EEeCC-----CcEEEEEEEccccCCceEEEE----------------------EEEECCCCCC-c
Confidence                           78776     56777777433 555444444                      4668787765 6


Q ss_pred             ceeEEeeEEcCceEEEEEec---CCCceeeeEEEEccCceeEEEEEEEeccCCC-ceEEEEEEEecCCCcEEEEEEcCCC
Q psy5108         253 ANRLSLGFVGSDFVFHTNVD---DGKLFGGTVYQKLGPKLETGVQLAWSSESND-TKFAFGCKYDLENQASVRAKVNNAS  328 (345)
Q Consensus       253 k~~~~lgY~~~d~~~s~~l~---n~~~~~~S~~~kv~~~~~vGae~~~~~~~~~-~~~~vG~ky~ld~~~~lKAKvnn~g  328 (345)
                      ...+.+.|.++.+.+...++   .+..+.+|..- ..++|.+|+|+.|+...+. +...+|..|.- +++.+.+++++..
T Consensus       123 s~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~-g~~~~~~G~e~~yd~~~~~~t~~n~~~gY~~-~d~~~s~~l~~~~  200 (295)
T 3emn_X          123 NAKIKTGYKREHINLGCDVDFDIAGPSIRGALVL-GYEGWLAGYQMNFETSKSRVTQSNFAVGYKT-DEFQLHTNVNDGT  200 (295)
T ss_dssp             EEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEE-EETTEEEEEEEEEETTTTEEEEEEEEEEEEC-SSEEEEEEEETTT
T ss_pred             ceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEE-eeCCEEEEEEEEEEeCCCCeeeEEEEEEEcC-CCEEEEEEECCCC
Confidence            78999999999998855542   23455555322 2589999999999987643 34566666653 8999999999989


Q ss_pred             eEEEEEEEEccCCcee
Q psy5108         329 QIGLGYSQKLNDALSL  344 (345)
Q Consensus       329 ~vgl~y~qkL~p~v~l  344 (345)
                      .+.++|.|+++|++++
T Consensus       201 ~~~aSy~qkvs~~~~~  216 (295)
T 3emn_X          201 EFGGSIYQKVNKKLET  216 (295)
T ss_dssp             EEEEEEEEECSSSEEE
T ss_pred             eEEEEEEEECCCceEE
Confidence            9999999999998865

>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A*

Probab=87.78  E-value=20  Score=34.72  Aligned_cols=71  Identities=10%  Similarity=0.132  Sum_probs=51.7

Q ss_pred             CCceeeeEEEEccCceeEEEEEEEecc--------------------------CCCceEEEEEEEecCCCcEEEEEEc--
Q psy5108         274 GKLFGGTVYQKLGPKLETGVQLAWSSE--------------------------SNDTKFAFGCKYDLENQASVRAKVN--  325 (345)
Q Consensus       274 ~~~~~~S~~~kv~~~~~vGae~~~~~~--------------------------~~~~~~~vG~ky~ld~~~~lKAKvn--  325 (345)
                      -..+..++.|++.++|.+.+++.|..=                          +....+.||..|++++..++||=++  
T Consensus       278 P~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRaG~~yd  357 (439)
T 3bs0_A          278 PASLTLGLAHQFNERWVVAADIKRAYWGDVMDSMNVAFISQLGGIDVALPHRYQDITVASIGTAYKYNNDLTLRAGYSYA  357 (439)
T ss_dssp             CCEEEEEEEEESSSSEEEEEEEEEECGGGCCC-CCCEEEETTEEEEECCCCCCCCEEEEEEEEEEECSSSEEEEEEEEEC
T ss_pred             CcEEEEeEEEEeCCCEEEEEEEEEEEccchhhheeeeecCCCCCccccCCCCceeeeEEEEEEEEEcCCCEEEEEeeEcc
Confidence            356899999999999999999988521                          1245789999999999999998542  


Q ss_pred             ----------------CCCeEEEEEEEEccCCcee
Q psy5108         326 ----------------NASQIGLGYSQKLNDALSL  344 (345)
Q Consensus       326 ----------------n~g~vgl~y~qkL~p~v~l  344 (345)
                                      +...++++...++.++++|
T Consensus       358 ~sp~~~~~~~~~~p~~~~~~~s~G~gy~~~~~~~i  392 (439)
T 3bs0_A          358 QQALDSELILPVIPAYLKRHVTFGGEYDFDKDSRI  392 (439)
T ss_dssp             C------CCCTTSCCCCSEEEEEEEEEESSSSEEE
T ss_pred             cCCCCcccccccccCccceEEEeeeEEEcCCCcEE
Confidence                            1223556666666665543

>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii}

Probab=87.53  E-value=21  Score=34.37  Aligned_cols=50  Identities=10%  Similarity=0.161  Sum_probs=40.7

Q ss_pred             CceeeeEEEEccCceeEEEEEEEecc----------------------------CCCceEEEEEEEecCCCcEEEEEE
Q psy5108         275 KLFGGTVYQKLGPKLETGVQLAWSSE----------------------------SNDTKFAFGCKYDLENQASVRAKV  324 (345)
Q Consensus       275 ~~~~~S~~~kv~~~~~vGae~~~~~~----------------------------~~~~~~~vG~ky~ld~~~~lKAKv  324 (345)
                      ..+..++.|++.++|.+.+.+.|..=                            +....+++|..|++++..++||=+
T Consensus       279 ~~~~~g~~~~~~~~~~l~~d~~~~~wS~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRaG~  356 (441)
T 3bry_A          279 AQLTVGISHQFNDQLSVSADYQRVFWSSVMKDMNVGFVQSGSAANLDLSLPQNYRDISVFGIGAEYRYNAKWTFRGGF  356 (441)
T ss_dssp             CEEEEEEEEESSSSEEEEEEEEEECGGGCCSEEEEEECCSSSCCCCCCEEECCCCCEEEEEEEEEEEEETTEEEEEEE
T ss_pred             cEEEEeEEEEeCCCEEEEEEEEEEEccchhhheeeeccCCcccccccccCCCCceeceEEEEEEEEEcCCCeEEEEee
Confidence            56789999999999999999988531                            125688999999999999998853

>3prn_A Porin; integral membrane protein, pore eyelet mutant, membra protein; HET: C8E; 1.90A {Rhodobacter blasticus} SCOP: f.4.3.1 PDB: 1bh3_A* 1prn_A* 7prn_A* 6prn_A* 5prn_A* 2prn_A* 8prn_A* 1h6s_1

Probab=87.02  E-value=20  Score=33.50  Aligned_cols=72  Identities=11%  Similarity=0.066  Sum_probs=33.2

Q ss_pred             ceeEEeeEEcC-ceEEEEEecCC------CceeeeEEEEccCceeEEEEEE-EeccCCCceEEEEEEEecCCCcEEEEEE
Q psy5108         253 ANRLSLGFVGS-DFVFHTNVDDG------KLFGGTVYQKLGPKLETGVQLA-WSSESNDTKFAFGCKYDLENQASVRAKV  324 (345)
Q Consensus       253 k~~~~lgY~~~-d~~~s~~l~n~------~~~~~S~~~kv~~~~~vGae~~-~~~~~~~~~~~vG~ky~ld~~~~lKAKv  324 (345)
                      .+-++++|.-. .+.+.+...+.      +.+..+.-..+ ..+.+.+... .......+.++||+.|.|-..+++++-+
T Consensus       193 ~~~l~~~y~fG~~~~v~~~Y~d~~d~~~~~~~gl~~~Y~v-~a~tv~a~y~D~~~~~~~t~yGIg~~YDLGgGasl~~gy  271 (289)
T 3prn_A          193 IAFVGAAYKFNDAGTVGLNWYDNGLSTAGDQVTLYGNYAF-GATTVRAYVSDIDRAGADTAYGIGADYQFAEGVKVSGSV  271 (289)
T ss_dssp             EEEEEEEECCSSSEEEEEEEEECTTSTTCSEEEEEEEEEE-TTEEEEEEEEEECSTTCCCEEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEEEEcCCCeEEEEEEEccccccCCceEEEEEEeEe-cCeEEEEEEeccccCCCcceEEEEEEecCCCCeEEEEEE
Confidence            45555566555 55555544321      22333333334 2233333222 1111234566666666666666666544


Q ss_pred             c
Q psy5108         325 N  325 (345)
Q Consensus       325 n  325 (345)
                      .
T Consensus       272 ~  272 (289)
T 3prn_A          272 Q  272 (289)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3pgu_A Long-chain fatty acid transport protein; outer membrane beta barrel, lipid transport, outer membrane; HET: C8E 2PE OLA; 1.70A {Escherichia coli k-12} SCOP: f.4.3.4 PDB: 3pgs_A* 1t16_A* 1t1l_A* 3dwn_A* 2r4p_A* 3pgr_A* 2r4n_A* 2r4l_A* 2r89_A 2r4o_A* 3pf1_A* 2r8a_A* 2r88_A

Probab=83.02  E-value=35  Score=33.05  Aligned_cols=50  Identities=18%  Similarity=0.436  Sum_probs=40.4

Q ss_pred             CceeeeEEEEccCceeEEEEEEEec--------------------c---CCCceEEEEEEEecCCCcEEEEEE
Q psy5108         275 KLFGGTVYQKLGPKLETGVQLAWSS--------------------E---SNDTKFAFGCKYDLENQASVRAKV  324 (345)
Q Consensus       275 ~~~~~S~~~kv~~~~~vGae~~~~~--------------------~---~~~~~~~vG~ky~ld~~~~lKAKv  324 (345)
                      ..+..++.|++.++|.+.+++.|..                    .   +....+++|..|++++..++|+=+
T Consensus       273 ~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~~~~~~~g~~~~~~~~~~~D~~~~~lG~eY~~~~~~~lRaG~  345 (427)
T 3pgu_A          273 EMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGI  345 (427)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEESSCSCEEEEEETTEEEEEECCCCEEEEEEEEEEEEECSSSEEEEEEE
T ss_pred             cEEEEEEEEecCCCEEEEEEEEEEEeccccceEEEcCCCcccccccCCceeccEEEEEEEEEcCCCEEEEEEE
Confidence            4567889999999999999999851                    0   136788999999998889998853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00