Psyllid ID: psy5110

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
MINQFEYKPFRIVLCNGEPIQGNEKVLQSVQIFKIGKWVEISVLGSPDSKKVVFSPWSVRNVRTYYRFKWEKVESCEQNISRTASPLFILPLSMSLVLFLPPVSMLCSSELYGLADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVSWVEPTWRMEDLFVVEQVQVAFNSDLKGSHAMTSETTTPDSISETFDHIIYNKGQSPAHVEISHCPQRVCLESADPPLVICLVTDKLYLRHEWGLVEVKIPIRDVPQDPCVNPPVM
cccccccccccEEEEccccccccccEEEEEEEEEEccEEEEEEEEccccccEEEEcEEcccEEEEEEccccccccccHHHcccccccccccccccccccccccccHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccEEccccHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccccccccccc
cccEEEccccEEEEEcccccccccEEEEEEccccccEEEEEEEEccccEEEEEccccccccEEEEEEccccHHHHHHHHHHccHHHHccccccccccEEcccccEEEEEHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccHHHHc
minqfeykpfrivlcngepiqgnEKVLQSVQIFKIGKWVEIsvlgspdskkvvfspwsvrnvrTYYRFKWEKVESCEQnisrtasplfilplsmslvlflppvsmlcsselygladsnrtTAAGLLENFGLVAHELAHQwfgnyatpswwSYAWLKESVATLFEYYVVSWveptwrmeDLFVVEQVQVAFNsdlkgshamtsetttpdsiseTFDHIiynkgqspahveishcpqrvclesadpplviclvtdklylrhewglvevkipirdvpqdpcvnppvm
MINQFEYKPFRIVLCNGEPIQGNEKVLQSVQIFKIGKWVEisvlgspdskkvvfspwsvrnvRTYYRFKWEKVESCEQNISRTASPLFILPLSMSLVLFLPPVSMLCSSELYGLADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVSWVEPTWRMEDLFVVEQVQVAFNsdlkgshamtsetttpdsISETFDHIIYNKGQSPAHVEISHCPQRVCLESADPPLVICLVTDKLYLRHEWGLvevkipirdvpqdpcvnppvm
MINQFEYKPFRIVLCNGEPIQGNEKVLQSVQIFKIGKWVEISVLGSPDSKKVVFSPWSVRNVRTYYRFKWEKVESCEQNISRTASPLFILPLSMSLVLFLPPVSMLCSSELYGLADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVSWVEPTWRMEDLFVVEQVQVAFNSDLKGSHAMTSETTTPDSISETFDHIIYNKGQSPAHVEISHCPQRVCLESADPPLVICLVTDKLYLRHEWGLVEVKIPIRDVPQDPCVNPPVM
****FEYKPFRIVLCNGEPIQGNEKVLQSVQIFKIGKWVEISVLGSPDSKKVVFSPWSVRNVRTYYRFKWEKVESCEQNISRTASPLFILPLSMSLVLFLPPVSMLCSSELYGLADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVSWVEPTWRMEDLFVVEQVQVAFNSD*******************TFDHIIYNKGQSPAHVEISHCPQRVCLESADPPLVICLVTDKLYLRHEWGLVEVKIPIRDV***********
**N****KPFRIVLCNGEPIQGNEKVLQSVQIFKIGKWVEISVLGSPDSKKVVFSPWSVRNVRTYYRFKWEKVESCEQNISRTASPLFILPLSMSLVLFLPPVSMLCSSELYGLADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVSWVEPTWRMEDLFVVEQVQVAFNSDLKGSHAMTSETTTPDSISETFDHIIYNKGQSPAHVEISHCPQRVCLESADPPLVICLVTDKLYLRHEWGLVEVKIPIRDVPQDPCVNPPVM
MINQFEYKPFRIVLCNGEPIQGNEKVLQSVQIFKIGKWVEISVLGSPDSKKVVFSPWSVRNVRTYYRFKWEKVESCEQNISRTASPLFILPLSMSLVLFLPPVSMLCSSELYGLADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVSWVEPTWRMEDLFVVEQVQVAFNSDLKG************SISETFDHIIYNKGQSPAHVEISHCPQRVCLESADPPLVICLVTDKLYLRHEWGLVEVKIPIRDVPQDPCVNPPVM
*INQFEYKPFRIVLCNGEPIQGNEKVLQSVQIFKIGKWVEISVLGSPDSKKVVFSPWSVRNVRTYYRFKWEKVESCEQNISRTASPLFILPLSMSLVLFLPPVSMLCSSELYGLADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVSWVEPTWRMEDLFVVEQVQVAFNSDLKGSHAMTSETTTPDSISETFDHIIYNKGQSPAHVEISHCPQRVCLESADPPLVICLVTDKLYLRHEWGLVEVKIPIRDVPQDPCV*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MINQFEYKPFRIVLCNGEPIQGNEKVLQSVQIFKIGKWVEISVLGSPDSKKVVFSPWSVRNVRTYYRFKWEKVESCEQNISRTASPLFILPLSMSLVLFLPPVSMLCSSELYGLADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVSWVEPTWRMEDLFVVEQVQVAFNSDLKGSHAMTSETTTPDSISETFDHIIYNKGQSPAHVEISHCPQRVCLESADPPLVICLVTDKLYLRHEWGLVEVKIPIRDVPQDPCVNPPVM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query284 2.2.26 [Sep-21-2011]
P15541 966 Aminopeptidase N OS=Oryct yes N/A 0.404 0.119 0.389 4e-18
P97449 966 Aminopeptidase N OS=Mus m yes N/A 0.330 0.097 0.469 7e-18
P15144 967 Aminopeptidase N OS=Homo yes N/A 0.404 0.118 0.395 1e-17
P79171 967 Aminopeptidase N OS=Felis N/A N/A 0.390 0.114 0.417 4e-17
O57579 967 Aminopeptidase N OS=Gallu yes N/A 0.404 0.118 0.389 4e-17
P15684 965 Aminopeptidase N OS=Rattu yes N/A 0.330 0.097 0.459 5e-17
P79098 965 Aminopeptidase N OS=Bos t yes N/A 0.330 0.097 0.469 1e-16
Q32LQ0 956 Glutamyl aminopeptidase O no N/A 0.390 0.116 0.383 1e-16
P15145 963 Aminopeptidase N OS=Sus s yes N/A 0.330 0.097 0.469 2e-16
Q97AJ6 779 Tricorn protease-interact yes N/A 0.401 0.146 0.387 3e-16
>sp|P15541|AMPN_RABIT Aminopeptidase N OS=Oryctolagus cuniculus GN=ANPEP PE=1 SV=4 Back     alignment and function desciption
 Score = 92.0 bits (227), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 72/149 (48%), Gaps = 34/149 (22%)

Query: 106 LCSSELYGLADSNRTTAAGLLENFGLV--------------------------AHELAHQ 139
           L  S+  GL D N    AG +EN+GLV                          AHELAHQ
Sbjct: 334 LEKSDQIGLPDFN----AGAMENWGLVTYRESALLFDPLVSSISNKERVVTVVAHELAHQ 389

Query: 140 WFGNYATPSWWSYAWLKESVATLFEYYVVSWVEPTWRMEDLFVVEQVQVAFNSD-LKGSH 198
           WFGN  T  WW+  WL E  A+  EY    + EPTW ++DL V+ ++      D L  SH
Sbjct: 390 WFGNLVTVDWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLIVLNELHSVMAVDALASSH 449

Query: 199 AMTS---ETTTPDSISETFDHIIYNKGQS 224
            ++S   E  TP  ISE FD I Y+KG S
Sbjct: 450 PLSSPADEVNTPAQISELFDSITYSKGAS 478
Broad specificity aminopeptidase. Plays a role in the final digestion of peptides generated from hydrolysis of proteins by gastric and pancreatic proteases. May be involved in the metabolism of regulatory peptides of diverse cell types and in the cleavage of peptides bound to major histocompatibility complex class II molecules of antigen presenting cells. May have a role in angiogenesis.
Oryctolagus cuniculus (taxid: 9986)
EC: 3EC: .EC: 4EC: .EC: 1EC: 1EC: .EC: 2
>sp|P97449|AMPN_MOUSE Aminopeptidase N OS=Mus musculus GN=Anpep PE=1 SV=4 Back     alignment and function description
>sp|P15144|AMPN_HUMAN Aminopeptidase N OS=Homo sapiens GN=ANPEP PE=1 SV=4 Back     alignment and function description
>sp|P79171|AMPN_FELCA Aminopeptidase N OS=Felis catus GN=ANPEP PE=1 SV=3 Back     alignment and function description
>sp|O57579|AMPN_CHICK Aminopeptidase N OS=Gallus gallus GN=ANPEP PE=1 SV=1 Back     alignment and function description
>sp|P15684|AMPN_RAT Aminopeptidase N OS=Rattus norvegicus GN=Anpep PE=1 SV=2 Back     alignment and function description
>sp|P79098|AMPN_BOVIN Aminopeptidase N OS=Bos taurus GN=ANPEP PE=2 SV=4 Back     alignment and function description
>sp|Q32LQ0|AMPE_BOVIN Glutamyl aminopeptidase OS=Bos taurus GN=ENPEP PE=2 SV=1 Back     alignment and function description
>sp|P15145|AMPN_PIG Aminopeptidase N OS=Sus scrofa GN=ANPEP PE=1 SV=4 Back     alignment and function description
>sp|Q97AJ6|TRF3_THEVO Tricorn protease-interacting factor F3 OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=trf3 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
328703710 996 PREDICTED: glutamyl aminopeptidase-like 0.376 0.107 0.440 7e-20
328719823 951 PREDICTED: aminopeptidase N-like [Acyrth 0.330 0.098 0.510 7e-20
350405966 983 PREDICTED: aminopeptidase N-like [Bombus 0.330 0.095 0.536 1e-19
322779509 984 hypothetical protein SINV_80061 [Solenop 0.376 0.108 0.467 2e-19
340727898 805 PREDICTED: aminopeptidase N-like [Bombus 0.330 0.116 0.526 2e-19
345480592 936 PREDICTED: aminopeptidase N-like [Nasoni 0.440 0.133 0.442 5e-19
66512450 982 PREDICTED: aminopeptidase N-like isoform 0.330 0.095 0.515 5e-19
242016965 987 Aminopeptidase N precursor, putative [Pe 0.362 0.104 0.415 5e-19
380018053 979 PREDICTED: LOW QUALITY PROTEIN: aminopep 0.330 0.096 0.515 5e-19
328712389 1006 PREDICTED: aminopeptidase N-like isoform 0.362 0.102 0.423 1e-18
>gi|328703710|ref|XP_003242279.1| PREDICTED: glutamyl aminopeptidase-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 66/109 (60%), Gaps = 2/109 (1%)

Query: 114 LADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVSWVEP 173
           L+D++RT     +    +V HEL+HQWFG+  T +WW Y WL E  AT FEY+    VEP
Sbjct: 352 LSDNSRTKIKEFVTT--VVQHELSHQWFGDLVTCAWWDYLWLNEGFATFFEYFATKMVEP 409

Query: 174 TWRMEDLFVVEQVQVAFNSDLKGSHAMTSETTTPDSISETFDHIIYNKG 222
            WR+ED+FV E  Q+A ++D    HA++    TP+ I   FD I Y+K 
Sbjct: 410 DWRLEDVFVYEVHQLALDADQSPMHAISGSVETPEQIRSMFDDISYSKA 458

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328719823|ref|XP_001946754.2| PREDICTED: aminopeptidase N-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|350405966|ref|XP_003487612.1| PREDICTED: aminopeptidase N-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|322779509|gb|EFZ09701.1| hypothetical protein SINV_80061 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|340727898|ref|XP_003402271.1| PREDICTED: aminopeptidase N-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|345480592|ref|XP_001602131.2| PREDICTED: aminopeptidase N-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|66512450|ref|XP_396261.2| PREDICTED: aminopeptidase N-like isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|242016965|ref|XP_002428965.1| Aminopeptidase N precursor, putative [Pediculus humanus corporis] gi|212513794|gb|EEB16227.1| Aminopeptidase N precursor, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|380018053|ref|XP_003692951.1| PREDICTED: LOW QUALITY PROTEIN: aminopeptidase N-like [Apis florea] Back     alignment and taxonomy information
>gi|328712389|ref|XP_003244798.1| PREDICTED: aminopeptidase N-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
UNIPROTKB|P15144 967 ANPEP "Aminopeptidase N" [Homo 0.330 0.097 0.469 1.2e-22
MGI|MGI:5000466 966 Anpep "alanyl (membrane) amino 0.330 0.097 0.469 3.8e-22
UNIPROTKB|F1PCB5 975 ANPEP "Aminopeptidase N" [Cani 0.330 0.096 0.469 1e-21
RGD|2991 965 Anpep "alanyl (membrane) amino 0.330 0.097 0.459 1.6e-21
UNIPROTKB|G3V7W7 965 Anpep "Alanyl (Membrane) amino 0.330 0.097 0.459 1.6e-21
UNIPROTKB|F1SK03 963 ANPEP "Aminopeptidase N" [Sus 0.330 0.097 0.469 4.2e-21
UNIPROTKB|P15145 963 ANPEP "Aminopeptidase N" [Sus 0.330 0.097 0.469 4.2e-21
FB|FBgn0039640 999 CG14516 [Drosophila melanogast 0.390 0.111 0.455 3.7e-20
UNIPROTKB|O57579 967 ANPEP "Aminopeptidase N" [Gall 0.330 0.097 0.459 8.2e-20
UNIPROTKB|P79098 965 ANPEP "Aminopeptidase N" [Bos 0.330 0.097 0.469 2.7e-19
UNIPROTKB|P15144 ANPEP "Aminopeptidase N" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 230 (86.0 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
 Identities = 46/98 (46%), Positives = 57/98 (58%)

Query:   131 LVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVSWVEPTWRMEDLFVVEQVQVAF 190
             ++AHELAHQWFGN  T  WW+  WL E  A+  EY    + EPTW ++DL V+  V    
Sbjct:   385 VIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVM 444

Query:   191 NSD-LKGSHAMT---SETTTPDSISETFDHIIYNKGQS 224
               D L  SH ++   SE  TP  ISE FD I Y+KG S
Sbjct:   445 AVDALASSHPLSTPASEINTPAQISELFDAISYSKGAS 482
GO:0008270 "zinc ion binding" evidence=IEA
GO:0001525 "angiogenesis" evidence=IEA
GO:0004177 "aminopeptidase activity" evidence=IEA
GO:0006508 "proteolysis" evidence=IEA
GO:0008237 "metallopeptidase activity" evidence=IEA
GO:0019048 "virus-host interaction" evidence=IEA
GO:0030154 "cell differentiation" evidence=IEA
GO:0009897 "external side of plasma membrane" evidence=IEA
GO:0005829 "cytosol" evidence=IEA
GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IDA
GO:0004872 "receptor activity" evidence=TAS
GO:0005887 "integral to plasma membrane" evidence=TAS
MGI|MGI:5000466 Anpep "alanyl (membrane) aminopeptidase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PCB5 ANPEP "Aminopeptidase N" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|2991 Anpep "alanyl (membrane) aminopeptidase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V7W7 Anpep "Alanyl (Membrane) aminopeptidase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1SK03 ANPEP "Aminopeptidase N" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P15145 ANPEP "Aminopeptidase N" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
FB|FBgn0039640 CG14516 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|O57579 ANPEP "Aminopeptidase N" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P79098 ANPEP "Aminopeptidase N" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
cd09601446 cd09601, M1_APN_2, Peptidase M1 Aminopeptidase N f 5e-42
pfam01433390 pfam01433, Peptidase_M1, Peptidase family M1 3e-36
COG0308 859 COG0308, PepN, Aminopeptidase N [Amino acid transp 7e-20
cd09602438 cd09602, M1_APN_3, Peptidase M1 family containing 8e-16
cd09595407 cd09595, M1, Peptidase M1 family contains aminopep 3e-12
TIGR02412 831 TIGR02412, pepN_strep_liv, aminopeptidase N, Strep 1e-11
cd09603415 cd09603, M1_APN_4, Peptidase M1 family Aminopeptid 3e-11
pfam13485128 pfam13485, Peptidase_MA_2, Peptidase MA superfamil 4e-07
cd09599442 cd09599, M1_LTA4H, Peptidase M1 family contains le 1e-04
cd09604435 cd09604, M1_APN_5, Peptidase M1 family containing 3e-04
cd09594125 cd09594, GluZincin, Peptidase Gluzincin family (th 3e-04
TIGR02411 602 TIGR02411, leuko_A4_hydro, leukotriene A-4 hydrola 0.001
>gnl|CDD|189008 cd09601, M1_APN_2, Peptidase M1 Aminopeptidase N family incudes tricorn interacting factor F3, Endoplasmic reticulum aminopeptidase 1 (ERAP1), Aminopeptidase Q (APQ) Back     alignment and domain information 
 Score =  149 bits (378), Expect = 5e-42
 Identities = 56/130 (43%), Positives = 65/130 (50%), Gaps = 27/130 (20%)

Query: 122 AAGLLENFGL--------------------------VAHELAHQWFGNYATPSWWSYAWL 155
           AAG +EN+GL                          VAHELAHQWFGN  T  WW   WL
Sbjct: 254 AAGAMENWGLITYRETALLYDPKTSSASNKQRVATVVAHELAHQWFGNLVTMKWWDDLWL 313

Query: 156 KESVATLFEYYVVSWVEPTWRMEDLFVVEQVQVAFNSD-LKGSHAMTSETTTPDSISETF 214
            E  AT  EY  V  +EP W M D FV++ +Q A   D L  SH ++    TPD ISE F
Sbjct: 314 NEGFATYMEYLGVDHLEPEWNMWDQFVLDDLQSALALDSLASSHPISVPVETPDEISEIF 373

Query: 215 DHIIYNKGQS 224
           D I Y+KG S
Sbjct: 374 DAISYSKGAS 383

This M1 peptidase family includes eukaryotic and bacterial members: aminopeptidase N (APN), aminopeptidase Q (APQ, laeverin), endoplasmic reticulum aminopeptidase 1 (ERAP1) as well as tricorn interacting factor F3. Aminopeptidase N (APN; CD13; Alanyl aminopeptidase; EC 3.4.11.2), a Type II integral membrane protease, consists of a small N-terminal cytoplasmic domain, a single transmembrane domain and a large extracellular ectodomain that contains the active site. It preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and is present in a variety of human tissues and cell types (leukocyte, fibroblast, endothelial and epithelial cells). APN expression is dysregulated in inflammatory diseases such as chronic pain, rheumatoid arthritis, multiple sclerosis, systemic sclerosis, systemic lupus erythematosus, polymyositis/dermatomyosytis and pulmonary sarcoidosis, and is enhanced in tumor cells such as melanoma, renal, prostate, pancreas, colon, gastric and thyroid cancers. It is considered a marker of differentiation since it is predominantly expressed on stem cells and on cells of the granulocytic and monocytic lineages at distinct stages of differentiation. Thus, APN inhibition may lead to the development of anti-cancer and anti-inflammatory drugs. ERAP1 also known as endoplasmic reticulum aminopeptidase associated with antigen processing (ERAAP), adipocyte derived leucine aminopeptidase (A-LAP) or aminopeptidase regulating tumor necrosis factor receptor I (THFRI) shedding (ARTS-1), associates with the closely related ER aminopeptidase ERAP2, for the final trimming of peptides within the ER for presentation by MHC class I molecules. ERAP1 is associated with ankylosing spondylitis (AS), an inflammatory arthritis that predominantly affects the spine. ERAP1 also aids in the shedding of membrane-bound cytokine receptors. The tricorn interacting factor F3, together with factors F1 and F2, degrades the tricorn protease products, producing free amino acids, thus completing the proteasomal degradation pathway. F3 is homologous to F2, but not F1, and shows a strong preference for glutamate in the P1' position. APQ, also known as laeverin, is specifically expressed in human embryo-derived extravillous trophoblasts (EVTs) that invade the uterus during early placentation. It cleaves the N-terminal amino acid of various peptides such as angiotensin III, endokinin C, and kisspeptin-10, all expressed in the placenta in large quantities. APN is a receptor for coronaviruses, although the virus receptor interaction site seems to be distinct from the enzymatic site and aminopeptidase activity is not necessary for viral infection. APNs are also putative Cry toxin receptors. Cry1 proteins are pore-forming toxins that bind to the midgut epithelial cell membrane of susceptible insect larvae, causing extensive damage. Several different toxins, including Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to bind to APNs; however, a direct role of APN in cytotoxicity has been yet to be firmly established. Length = 446
>gnl|CDD|216501 pfam01433, Peptidase_M1, Peptidase family M1 Back     alignment and domain information
>gnl|CDD|223385 COG0308, PepN, Aminopeptidase N [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|189009 cd09602, M1_APN_3, Peptidase M1 family containing Aminopeptidase N Back     alignment and domain information
>gnl|CDD|189002 cd09595, M1, Peptidase M1 family contains aminopeptidase N and leukotriene A4 hydrolase Back     alignment and domain information
>gnl|CDD|233857 TIGR02412, pepN_strep_liv, aminopeptidase N, Streptomyces lividans type Back     alignment and domain information
>gnl|CDD|189010 cd09603, M1_APN_4, Peptidase M1 family Aminopeptidase N Back     alignment and domain information
>gnl|CDD|222169 pfam13485, Peptidase_MA_2, Peptidase MA superfamily Back     alignment and domain information
>gnl|CDD|189006 cd09599, M1_LTA4H, Peptidase M1 family contains leukotriene A4 hydrolase Back     alignment and domain information
>gnl|CDD|189011 cd09604, M1_APN_5, Peptidase M1 family containing bacterial Aminopeptidase N Back     alignment and domain information
>gnl|CDD|189001 cd09594, GluZincin, Peptidase Gluzincin family (thermolysin-like proteinases, TLPs) includes peptidases M1, M2, M3, M4, M13, M32 and M36 (fungalysins) Back     alignment and domain information
>gnl|CDD|233856 TIGR02411, leuko_A4_hydro, leukotriene A-4 hydrolase/aminopeptidase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 284
KOG1046|consensus 882 100.0
TIGR02412 831 pepN_strep_liv aminopeptidase N, Streptomyces livi 100.0
TIGR02414 863 pepN_proteo aminopeptidase N, Escherichia coli typ 100.0
COG0308 859 PepN Aminopeptidase N [Amino acid transport and me 100.0
TIGR02411 601 leuko_A4_hydro leukotriene A-4 hydrolase/aminopept 100.0
PRK14015 875 pepN aminopeptidase N; Provisional 100.0
PF01433390 Peptidase_M1: Peptidase family M1 This is family M 100.0
KOG1047|consensus 613 100.0
KOG1932|consensus 1180 99.78
PF13485128 Peptidase_MA_2: Peptidase MA superfamily 99.39
COG3975 558 Predicted protease with the C-terminal PDZ domain 98.27
PF05299122 Peptidase_M61: M61 glycyl aminopeptidase; InterPro 97.17
PF10460366 Peptidase_M30: Peptidase M30; InterPro: IPR019501 96.83
PF07607128 DUF1570: Protein of unknown function (DUF1570); In 96.77
PF10026195 DUF2268: Predicted Zn-dependent protease (DUF2268) 95.8
PF10023337 DUF2265: Predicted aminopeptidase (DUF2265); Inter 94.9
COG4324376 Predicted aminopeptidase [General function predict 93.92
PF04450205 BSP: Peptidase of plants and bacteria; InterPro: I 93.35
PF11916182 Vac14_Fig4_bd: Vacuolar protein 14 C-terminal Fig4 85.6
PF12315212 DUF3633: Protein of unknown function (DUF3633); In 83.69
PF12725318 DUF3810: Protein of unknown function (DUF3810); In 80.36
>KOG1046|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.3e-53  Score=423.35  Aligned_cols=259  Identities=23%  Similarity=0.355  Sum_probs=234.7

Q ss_pred             CCCceeeeCCCcc--------------CCCceeEEEecccccCceeEEEeecCCCCCcceeEEEecCCccchHhHHHHHH
Q psy5110           8 KPFRIVLCNGEPI--------------QGNEKVLQSVQIFKIGKWVEISVLGSPDSKKVVFSPWSVRNVRTYYRFKWEKV   73 (284)
Q Consensus         8 ~~~~~v~~~g~~~--------------~~~~k~~~y~~~~~ig~~~~~~~~~~~~~~~v~i~v~~~~~~~~~~~~~~~~~   73 (284)
                      +.+++.|||+..+              +.+++|++|++||.||+|+..+.   ..+.+|++|+|++|+......++++.+
T Consensus       187 p~~~~aLSNm~v~~~~~~~~~~~~~~F~~Tp~MstYLvAf~V~~f~~~e~---~~~~~v~vrv~a~p~~~~~~~~al~~~  263 (882)
T KOG1046|consen  187 PKGYTALSNMPVIKEEPVDDGWKTTTFEKTPKMSTYLVAFAVGDFVYVET---ITKSGVPVRVYARPEKINQGQFALEVA  263 (882)
T ss_pred             cCCceEeecCcccccccccCCeeEEEEEecCCCchhhheeeeecccccee---ecCCCceEEEEeChHHhhHHHHHHHHH
Confidence            4588999997544              35689999999999999999885   234458999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCccCCceeEEEeCCCCCCcccccccccc---------CCCCcHHHHHHHHHHHHHHHHHhhhccc
Q psy5110          74 ESCEQNISRTASPLFILPLSMSLVLFLPPVSMLCSSELYGLAD---------SNRTTAAGLLENFGLVAHELAHQWFGNY  144 (284)
Q Consensus        74 ~~~l~~~~~~~~~~~~yP~~k~diV~~P~~~~~~~mE~~gl~~---------~~~~~~~~~~~~~~~iaHEiAHqWfG~~  144 (284)
                      .+++++++++|+  .+||++|+|+|++|++.. |+||||||++         +..++...+..+..+||||+|||||||+
T Consensus       264 ~~~L~~~e~~f~--i~yPLpK~D~iavPdf~~-GAMENwGLvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNL  340 (882)
T KOG1046|consen  264 TKVLEFYEDYFG--IPYPLPKLDLVAVPDFSA-GAMENWGLVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNL  340 (882)
T ss_pred             HHHHHHHHHHhC--CCCCCccccEEecCCccc-cchhcCcceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCc
Confidence            999999999998  589999999999999975 9999999874         3445667788899999999999999999


Q ss_pred             cCcccccchhhcchHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhhcccC-CCCcccCCCChhhhhhcccccccccHH
Q psy5110         145 ATPSWWSYAWLKESVATLFEYYVVSWVEPTWRMEDLFVVEQVQVAFNSDLKG-SHAMTSETTTPDSISETFDHIIYNKGQ  223 (284)
Q Consensus       145 Vt~~~w~~~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~Pl~~~~~~~~~~~~~~~~~~Y~KG~  223 (284)
                      ||++||+|+|||||||+|++...++..+|++...+++..+.+..++..|+.. ++|+...+.++.++...|+.++|.||+
T Consensus       341 VTm~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~KGa  420 (882)
T KOG1046|consen  341 VTMKWWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQFLLENLERVLSLDALASSHPISVPVESPSEIDEIFDEISYQKGA  420 (882)
T ss_pred             ccHhhhhhhhhcccHHHHHHHHhhccCCcchhhHHHHHHHHHHHHhhhhcccccCCeeeecCCcchhhhhhhhhhhhHHH
Confidence            9999999999999999999999999999999988888888898999999998 999999888888888899999999999


Q ss_pred             HHHHHHHhhCChHHHHhhcCCchhhhhhhHHHHhhhcCcccccc-----------cccccccCCCCCCCC
Q psy5110         224 SPAHVEISHCPQRVCLESADPPLVICLVTDKLYLRHEWGLVEVK-----------IPIRDVPQDPCVNPP  282 (284)
Q Consensus       224 ~vl~mL~~~lG~~~F~~~l~~~l~~~~~~~~y~~~~~~~~~~~~-----------~~~~~~~~~w~~~~~  282 (284)
                      ++||||+..+|++.|+++|+          .|+.+|+|+|++.+           ..++++|+.|++|+-
T Consensus       421 svlRML~~~lGe~~F~~gi~----------~yL~~~~y~na~~~DLw~~l~~~~~~~v~~~M~~Wt~Q~G  480 (882)
T KOG1046|consen  421 SVLRMLESLLGEEVFRKGLR----------SYLKKHQYSNAKTEDLWDALEEGSGLDVSELMDTWTKQMG  480 (882)
T ss_pred             HHHHHHHHHHCHHHHHHHHH----------HHHHHhccCCCCchhHHHHHhccCCCCHHHHHhhhhcCCC
Confidence            99999999999999999999          99999999998654           467789999999973

>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type Back     alignment and domain information
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type Back     alignment and domain information
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase Back     alignment and domain information
>PRK14015 pepN aminopeptidase N; Provisional Back     alignment and domain information
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification Back     alignment and domain information
>KOG1047|consensus Back     alignment and domain information
>KOG1932|consensus Back     alignment and domain information
>PF13485 Peptidase_MA_2: Peptidase MA superfamily Back     alignment and domain information
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only] Back     alignment and domain information
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria Back     alignment and domain information
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function Back     alignment and domain information
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase Back     alignment and domain information
>COG4324 Predicted aminopeptidase [General function prediction only] Back     alignment and domain information
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [] Back     alignment and domain information
>PF11916 Vac14_Fig4_bd: Vacuolar protein 14 C-terminal Fig4p binding; InterPro: IPR021841 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length Back     alignment and domain information
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
4fyq_A 903 Human Aminopeptidase N (Cd13) Length = 903 1e-18
4f5c_A 959 Crystal Structure Of The Spike Receptor Binding Dom 2e-17
4h5h_A 908 Crystal Structure Of Porcine Aminopeptidase-N Compl 2e-17
4fke_A 909 Crystal Structure Of Porcine Aminopeptidase-N Lengt 2e-17
4hol_A 908 Crystal Structure Of Porcine Aminopeptidase-N Compl 5e-17
3q7j_A 780 Engineered Thermoplasma Acidophilum F3 Factor Mimic 3e-16
1z1w_A 780 Crystal Structures Of The Tricorn Interacting Facor 3e-16
3mdj_A 921 Er Aminopeptidase, Erap1, Bound To The Zinc Aminope 5e-15
4e36_A 967 Crystal Structure Of The Human Endoplasmic Reticulu 1e-14
2yd0_A 897 Crystal Structure Of The Soluble Domain Of Human En 1e-14
3qnf_A 954 Crystal Structure Of The Open State Of Human Endopl 1e-14
3se6_A 967 Crystal Structure Of The Human Endoplasmic Reticulu 4e-14
2xpy_A 632 Structure Of Native Leukotriene A4 Hydrolase From S 2e-04
2xq0_A 632 Structure Of Yeast Lta4 Hydrolase In Complex With B 2e-04
3cia_A 605 Crystal Structure Of Cold-Aminopeptidase From Colwe 6e-04
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13) Length = 903 Back     alignment and structure 
Iteration: 1

 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/149 (39%), Positives = 71/149 (47%), Gaps = 34/149 (22%)
Query: 106 LCSSELYGLADSNRTTAAGLLENFGLV--------------------------AHELAHQ 139
           L  S+  GL D N    AG +EN+GLV                          AHELAHQ
Sbjct: 274 LPKSDQIGLPDFN----AGAMENWGLVTYRENSLLFDPLSSSSSNKERVVTVIAHELAHQ 329
Query: 140 WFGNYATPSWWSYAWLKESVATLFEYYVVSWVEPTWRMEDLFVVEQVQVAFNSD-LKGSH 198
           WFGN  T  WW+  WL E  A+  EY    + EPTW ++DL V+  V      D L  SH
Sbjct: 330 WFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSH 389
Query: 199 AMT---SETTTPDSISETFDHIIYNKGQS 224
            ++   SE  TP  ISE FD I Y+KG S
Sbjct: 390 PLSTPASEINTPAQISELFDAISYSKGAS 418
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of A Porcine Respiratory Coronavirus In Complex With The Pig Aminopeptidase N Ectodomain Length = 959 Back     alignment and structure
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed With Cleaved Poly-Alanine Length = 908 Back     alignment and structure
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Length = 909 Back     alignment and structure
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed With Poly- Alanine Length = 908 Back     alignment and structure
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human Aminopeptidase N (Apn) As A Target For Anticancer Drug Development Length = 780 Back     alignment and structure
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3 From Thermoplasma Acidophilum, A Zinc Aminopeptidase In Three Different Conformations Length = 780 Back     alignment and structure
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase Inhibitor, Bestatin Length = 921 Back     alignment and structure
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum Aminopeptidase 2 Variant N392k Length = 967 Back     alignment and structure
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human Endoplasmic Reticulum Aminopeptidase 1 Erap1 Length = 897 Back     alignment and structure
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic Reticulum Aminopeptidase 1 Erap1 Length = 954 Back     alignment and structure
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum Aminopeptidase 2 Length = 967 Back     alignment and structure
>pdb|2XPY|A Chain A, Structure Of Native Leukotriene A4 Hydrolase From Saccharomyces Cerevisiae Length = 632 Back     alignment and structure
>pdb|2XQ0|A Chain A, Structure Of Yeast Lta4 Hydrolase In Complex With Bestatin Length = 632 Back     alignment and structure
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia Psychrerythraea Length = 605 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
1z5h_A 780 Tricorn protease interacting factor F3; zinc amino 4e-40
3se6_A 967 Endoplasmic reticulum aminopeptidase 2; thermolysi 6e-40
2xdt_A 897 Endoplasmic reticulum aminopeptidase 1; glycoprote 6e-40
3b7s_A 616 Leukotriene A-4 hydrolase; transition state, analo 8e-25
2xq0_A 632 LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: B 5e-24
3cia_A 605 Cold-active aminopeptidase; psychrohilic, hydrolas 2e-20
2gtq_A 867 Aminopeptidase N; alanine aminopeptidase, M1 famil 1e-17
3ebh_A 889 PFA-M1, M1 family aminopeptidase; hydrolase, metal 2e-16
3b34_A 891 Aminopeptidase N; protease, hydrolase, thermolysin 7e-15
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A* Length = 780 Back     alignment and structure
 Score =  147 bits (372), Expect = 4e-40
 Identities = 43/116 (37%), Positives = 58/116 (50%), Gaps = 2/116 (1%)

Query: 110 ELYGLADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVS 169
           E+Y     N +       +  ++AHE+AHQWFG+  T  WW+  WL ES AT   Y  + 
Sbjct: 242 EIYMDIAEN-SAVTVKRNSANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMD 300

Query: 170 WVEPTWRMEDLFVVEQVQVAFNSD-LKGSHAMTSETTTPDSISETFDHIIYNKGQS 224
            + P W     F V +   A  SD LK +H +  +   PD IS+ FD I Y KG S
Sbjct: 301 TLFPEWSFWGDFFVSRTSGALRSDSLKNTHPIEVDVRDPDEISQIFDEISYGKGAS 356
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} Length = 967 Back     alignment and structure
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide, hydrolysis, hydrolase, leukotriene biosynthesis, metal-binding, metalloprotease; 1.47A {Homo sapiens} SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L* 2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ... Length = 616 Back     alignment and structure
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A* Length = 632 Back     alignment and structure
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea} Length = 605 Back     alignment and structure
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis} Length = 867 Back     alignment and structure
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A* Length = 889 Back     alignment and structure
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A* Length = 891 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
4fke_A 909 Aminopeptidase N; zinc aminopeptidase, hydrolase; 100.0
3se6_A 967 Endoplasmic reticulum aminopeptidase 2; thermolysi 100.0
2xdt_A 897 Endoplasmic reticulum aminopeptidase 1; glycoprote 100.0
1z5h_A 780 Tricorn protease interacting factor F3; zinc amino 100.0
3ebh_A 889 PFA-M1, M1 family aminopeptidase; hydrolase, metal 100.0
3u9w_A 608 Leukotriene A-4 hydrolase; hydrolase-hydrolase inh 100.0
3b34_A 891 Aminopeptidase N; protease, hydrolase, thermolysin 100.0
2gtq_A 867 Aminopeptidase N; alanine aminopeptidase, M1 famil 100.0
2xq0_A 632 LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: B 100.0
3cia_A 605 Cold-active aminopeptidase; psychrohilic, hydrolas 100.0
4fgm_A 597 Aminopeptidase N family protein; structural genomi 99.88
2y3u_A 785 Collagenase, collagenase G; hydrolase, gluzincin, 85.81
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A* Back     alignment and structure
Probab=100.00  E-value=1.7e-51  Score=413.59  Aligned_cols=259  Identities=23%  Similarity=0.342  Sum_probs=225.8

Q ss_pred             CCCceeeeCCCccC-----------------CCceeEEEecccccCceeEEEeecCCCCCcceeEEEecCCccch--HhH
Q psy5110           8 KPFRIVLCNGEPIQ-----------------GNEKVLQSVQIFKIGKWVEISVLGSPDSKKVVFSPWSVRNVRTY--YRF   68 (284)
Q Consensus         8 ~~~~~v~~~g~~~~-----------------~~~k~~~y~~~~~ig~~~~~~~~~~~~~~~v~i~v~~~~~~~~~--~~~   68 (284)
                      ..+++|+|||.+..                 .+++|++|+++|+||+|......   .++++++++|++|+..+.  +.+
T Consensus       174 p~~~~alSN~~~~~~~~~~~~~~~~~~~~f~~t~pmstYL~a~~vg~f~~~~~~---~~~g~~~~v~~~p~~~~~~~~~~  250 (909)
T 4fke_A          174 PNNLTALSNMPPKGSSTPLAEDPNWSVTEFETTPVMSTYLLAYIVSEFQSVNET---AQNGVLIRIWARPNAIAEGHGMY  250 (909)
T ss_dssp             ETTSEEEESSCBSSSCEECTTCTTEEEEEBCCCCSBCGGGCCEEEESCEEEEEE---CTTSCEEEEEECHHHHHTTTTHH
T ss_pred             CCCCEEEcCCcccccccceecCCCeEEEEEecCCCccceeeEEEecceEEEeec---cCCCcEEEEEEecchhhhhhHHH
Confidence            46889999986542                 24568899999999999887752   345788999999986553  468


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCccCCceeEEEeCCCCCCcccccccccc---------CCCCcHHHHHHHHHHHHHHHHHh
Q psy5110          69 KWEKVESCEQNISRTASPLFILPLSMSLVLFLPPVSMLCSSELYGLAD---------SNRTTAAGLLENFGLVAHELAHQ  139 (284)
Q Consensus        69 ~~~~~~~~l~~~~~~~~~~~~yP~~k~diV~~P~~~~~~~mE~~gl~~---------~~~~~~~~~~~~~~~iaHEiAHq  139 (284)
                      +++.+++++++++++++  ++||++|+|+|++|++.. ||||||||++         +..++...+.....+||||+|||
T Consensus       251 al~~~~~~l~~~e~~~~--~~Yp~~k~d~v~vpdf~~-gaMEn~glit~~e~~ll~d~~~s~~~~~~~~~~viaHElAHq  327 (909)
T 4fke_A          251 ALNVTGPILNFFANHYN--TSYPLPKSDQIALPDFNA-GAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHELAHQ  327 (909)
T ss_dssp             HHHHHHHHHHHHHHHTT--SCCSSSEEEEEEETTCTT-CEECCTTEEEEEHHHHCCCTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcc--CCCCCCcccEEEecCCCC-cccccCcccccccceeecCcccCChHHHHHHHHHHHHHHHhh
Confidence            99999999999999997  689999999999999864 9999999764         34455677788899999999999


Q ss_pred             hhccccCcccccchhhcchHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhhcccC-CCCcccC---CCChhhhhhccc
Q psy5110         140 WFGNYATPSWWSYAWLKESVATLFEYYVVSWVEPTWRMEDLFVVEQVQVAFNSDLKG-SHAMTSE---TTTPDSISETFD  215 (284)
Q Consensus       140 WfG~~Vt~~~w~~~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~Pl~~~---~~~~~~~~~~~~  215 (284)
                      ||||+||++||+|+|||||||+|++.++.++.+|.+.+.+.|....++.++..|+.. ++|+...   +.++.+++..|+
T Consensus       328 WFGnlVT~~~W~dlWLnEGFAty~e~~~~~~~~~~~~~~~~f~~~~~~~~~~~d~~~~~~pi~~~~~~v~~~~~i~~~fd  407 (909)
T 4fke_A          328 WFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDALASSHPLTTPAEEVNTPAQISEMFD  407 (909)
T ss_dssp             TBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHSTTSCGGGGHHHHTHHHHHHHHTSTTCCCSCCCGGGCCSHHHHHTTSS
T ss_pred             hhcCeecccccCcceeehHHHHHHHHHHHHhccccccHHHhhhhhHHHHHHHHhhhcccCCccccccccCChhhHHhhhh
Confidence            999999999999999999999999999999999999888888888888999999888 8998763   567788889999


Q ss_pred             ccccccHHHHHHHHHhhCChHHHHhhcCCchhhhhhhHHHHhhhcCcccccccc-------------------cccccCC
Q psy5110         216 HIIYNKGQSPAHVEISHCPQRVCLESADPPLVICLVTDKLYLRHEWGLVEVKIP-------------------IRDVPQD  276 (284)
Q Consensus       216 ~~~Y~KG~~vl~mL~~~lG~~~F~~~l~~~l~~~~~~~~y~~~~~~~~~~~~~~-------------------~~~~~~~  276 (284)
                      .++|.||+++||||+..||+++|+++||          +|+++|+|++++.+|+                   ++++|++
T Consensus       408 ~i~Y~KGa~vL~mL~~~lG~e~F~~gl~----------~Yl~~~~~~na~~~Dl~~~l~~~s~~~~~~~~~~~v~~~~~~  477 (909)
T 4fke_A          408 SISYSKGASVIRMLSNFLTEDLFKEGLA----------SYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDR  477 (909)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHHHH----------HHHHHHTTEEECHHHHHHHHHHHHHTCSSCCCSSCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHH----------HHHHhhcccCCCHHHHHHHHHHHhCcccccccchhHHhHhhC
Confidence            9999999999999999999999999999          9999999999887653                   4568999


Q ss_pred             CCCCCC
Q psy5110         277 PCVNPP  282 (284)
Q Consensus       277 w~~~~~  282 (284)
                      |+.||-
T Consensus       478 W~~q~G  483 (909)
T 4fke_A          478 WTLQMG  483 (909)
T ss_dssp             HHSSCS
T ss_pred             ccccCC
Confidence            999974
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A* Back     alignment and structure
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A* Back     alignment and structure
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A* Back     alignment and structure
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ... Back     alignment and structure
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A* Back     alignment and structure
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis} Back     alignment and structure
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A* Back     alignment and structure
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea} Back     alignment and structure
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR} Back     alignment and structure
>2y3u_A Collagenase, collagenase G; hydrolase, gluzincin, metalloprotease; HET: P6G FLC; 2.55A {Clostridium histolyticum} PDB: 2y50_A* 2y6i_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 284
d3b7sa3252 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase cat 2e-04
>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 252 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Leukotriene A4 hydrolase catalytic domain
domain: Leukotriene A4 hydrolase catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 26/136 (19%), Positives = 42/136 (30%), Gaps = 3/136 (2%)

Query: 91  PLSMSLVLFLPPVSMLCSSELYGLADSNRTTAAGLLENFGLVAHELAHQWFGNYATPSWW 150
                 +L LPP       E   L     T  AG      ++AH+++H W GN  T   W
Sbjct: 44  VWGQYDLLVLPPSFPYGGMENPCLTFVTPTLLAGDKSLSNVIAHQISHSWTGNLVTNKTW 103

Query: 151 SYAWLKESVATLFEYYVVSWVEPTWRMEDLFVVEQVQVAFNSDLKGS---HAMTSETTTP 207
            + WL E      E ++   +          +    ++  +    G            T 
Sbjct: 104 DHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFGETHPFTKLVVDLTD 163

Query: 208 DSISETFDHIIYNKGQ 223
                 +  + Y KG 
Sbjct: 164 IDPDVAYSSVPYEKGF 179

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
d3b7sa3252 Leukotriene A4 hydrolase catalytic domain {Human ( 100.0
d1bqba_301 Aureolysin {Staphylococcus aureus [TaxId: 1280]} 83.56
d1kjpa_316 Thermolysin {Bacillus thermoproteolyticus [TaxId: 80.97
>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Leukotriene A4 hydrolase catalytic domain
domain: Leukotriene A4 hydrolase catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-46  Score=324.45  Aligned_cols=218  Identities=15%  Similarity=0.088  Sum_probs=171.4

Q ss_pred             cceeEEEecCCccchHhHHHHHHHHHHHHHHHhcCCCCCccCCceeEEEeCCCCCCccccccccccCCCCcHHHHHHHHH
Q psy5110          51 KVVFSPWSVRNVRTYYRFKWEKVESCEQNISRTASPLFILPLSMSLVLFLPPVSMLCSSELYGLADSNRTTAAGLLENFG  130 (284)
Q Consensus        51 ~v~i~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~yP~~k~diV~~P~~~~~~~mE~~gl~~~~~~~~~~~~~~~~  130 (284)
                      |++|+||++|+..+.++++++.+++++++++++++   +|||+|+|+|++|+....+||||+|++....+..........
T Consensus         7 g~~vrv~~~p~~~~~~~~~l~~~~~~l~~~e~~~g---~YP~~k~d~v~~~~~~~~ggmE~~~l~~~~~~~~~~~~~~~~   83 (252)
T d3b7sa3           7 GPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLGG---PYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLLAGDKSLSN   83 (252)
T ss_dssp             ETTEEEEECGGGHHHHHHHTTTHHHHHHHHHHHHC---CCCSSCCEEEECCTTCSSSEECCTTEEEECGGGCCSSSTTTH
T ss_pred             CCceEEEEccchHHHHHHHHHHHHHHHHHHHHhCC---CCCchhcCEEEeCCCccccccccceeeeecchhccccchHHH
Confidence            56889999999999999999999999999999985   699999999999655456899999987544333333334567


Q ss_pred             HHHHHHHHhhhccccCcccccchhhcchHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhhcccC-CCCcccCCCChh-
Q psy5110         131 LVAHELAHQWFGNYATPSWWSYAWLKESVATLFEYYVVSWVEPTWRMEDLFVVEQVQVAFNSDLKG-SHAMTSETTTPD-  208 (284)
Q Consensus       131 ~iaHEiAHqWfG~~Vt~~~w~~~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~Pl~~~~~~~~-  208 (284)
                      +||||+|||||||+||+++|++.||+||||+|++.+++++.+|...................|+.. .+|+........ 
T Consensus        84 ~iaHE~aHqWfG~~Vt~~~w~~~WL~EG~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (252)
T d3b7sa3          84 VIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFGETHPFTKLVVDLTD  163 (252)
T ss_dssp             HHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCGGGSSSCCCTT
T ss_pred             HHHHHHHHHHHhhhceeccccchHhhccHHHHHHHHhhccccchhhhhhhhhhhhhhHHHHHhhhhccCCcceeeccccc
Confidence            999999999999999999999999999999999999999999875443332222223334445444 666654332222 


Q ss_pred             -hhhhcccccccccHHHHHHHHHhhCC-hHHHHhhcCCchhhhhhhHHHHhhhcCcccccccccc---------------
Q psy5110         209 -SISETFDHIIYNKGQSPAHVEISHCP-QRVCLESADPPLVICLVTDKLYLRHEWGLVEVKIPIR---------------  271 (284)
Q Consensus       209 -~~~~~~~~~~Y~KG~~vl~mL~~~lG-~~~F~~~l~~~l~~~~~~~~y~~~~~~~~~~~~~~~~---------------  271 (284)
                       +.+..|+.++|.||+++||||++.|| ++.|+++||          .|+++|++++++.+|+++               
T Consensus       164 ~~~~~~f~~~~Y~Kga~vl~mL~~~iG~~~~f~~~lr----------~yl~~~~~~~~~~~df~~~l~~~~~~~~~~~~~  233 (252)
T d3b7sa3         164 IDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLK----------AYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQ  233 (252)
T ss_dssp             CCHHHHCSSHHHHHHHHHHHHHHHHHTCHHHHHHHHH----------HHHHHHTTEEECHHHHHHHHHHHTGGGHHHHTT
T ss_pred             cchhhcccceeecchhHHHHHHHHHhccHHHHHHHHH----------HHHHHhCCCCCCHHHHHHHHHHHhccccchhhH
Confidence             23456889999999999999999999 568999999          899999999998776443               


Q ss_pred             cccCCCCCCC
Q psy5110         272 DVPQDPCVNP  281 (284)
Q Consensus       272 ~~~~~w~~~~  281 (284)
                      +++++|+.|+
T Consensus       234 ~~f~~W~~~~  243 (252)
T d3b7sa3         234 VDWNAWLYSP  243 (252)
T ss_dssp             SCHHHHHHCC
T ss_pred             hHHHHHhcCC
Confidence            3377888775
>d1bqba_ d.92.1.2 (A:) Aureolysin {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1kjpa_ d.92.1.2 (A:) Thermolysin {Bacillus thermoproteolyticus [TaxId: 1427]} Back     information, alignment and structure